Citrus Sinensis ID: 038364
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1076 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SV26 | 768 | Pentatricopeptide repeat- | yes | no | 0.712 | 0.998 | 0.587 | 0.0 | |
| Q9LNU6 | 760 | Pentatricopeptide repeat- | no | no | 0.673 | 0.953 | 0.339 | 1e-139 | |
| Q9M1V3 | 960 | Pentatricopeptide repeat- | no | no | 0.842 | 0.944 | 0.313 | 1e-136 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.645 | 0.889 | 0.354 | 1e-135 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.684 | 0.937 | 0.339 | 1e-133 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.688 | 0.850 | 0.330 | 1e-132 | |
| Q7Y211 | 890 | Pentatricopeptide repeat- | no | no | 0.734 | 0.887 | 0.327 | 1e-132 | |
| Q9FRI5 | 790 | Pentatricopeptide repeat- | no | no | 0.680 | 0.926 | 0.336 | 1e-128 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.682 | 0.907 | 0.311 | 1e-126 | |
| Q9LUJ2 | 842 | Pentatricopeptide repeat- | no | no | 0.766 | 0.979 | 0.317 | 1e-126 |
| >sp|Q9SV26|PP297_ARATH Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=3 SV=2 | Back alignment and function desciption |
|---|
Score = 942 bits (2436), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/769 (58%), Positives = 575/769 (74%), Gaps = 2/769 (0%)
Query: 308 MAFWLGVEVHASLIKRGFD-FDVHLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNE 366
M +LG+ +H LIKRG D D + A M FYG+C + ANKLF E+ DDL WNE
Sbjct: 1 MYRFLGLTIHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANKLFDEMPK-RDDLAWNE 59
Query: 367 IIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSA 426
I+MV LR+ WE A++LFREMQFS AKA T+VK+LQ C+ F EG+QIHGYVL+
Sbjct: 60 IVMVNLRSGNWEKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLG 119
Query: 427 LESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFN 486
LESN+S+CN LI MYSRN KLEL+ +VF+SMKD NLSSWNS++SSYT LGYVD A L +
Sbjct: 120 LESNVSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLD 179
Query: 487 KMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELR 546
+M ++PDI+TWN LLSG+ + G ++ + +L+ MQ G +P+ SS+S +LQAV E
Sbjct: 180 EMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPG 239
Query: 547 LLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLIS 606
LK G+ HGYILRN L YD+YV T+L+DMY+K L A+ VFD M +NIVAWNSL+S
Sbjct: 240 HLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVS 299
Query: 607 GYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYP 666
G + L +A+ ++ +ME+E IKPD ++WNSL SGY+ G+ ++AL +I MK G+ P
Sbjct: 300 GLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKEKGVAP 359
Query: 667 NVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIH 726
NVV+WT++ SG +N N+R +LK FI+MQ+E + PN+ TMS+LL+ G L LL +GKE+H
Sbjct: 360 NVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLHSGKEVH 419
Query: 727 CLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGK 786
CL+ I DAYVAT L+DMY KSG+L+SA E+F NK+LASWNCM+MG+A++G G+
Sbjct: 420 GFCLRKNLICDAYVATALVDMYGKSGDLQSAIEIFWGIKNKSLASWNCMLMGYAMFGRGE 479
Query: 787 EAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCM 846
E I F +LE G +PDAITFT++L+ CKNSGLV+EGWKYFD M + Y IIPTIEH SCM
Sbjct: 480 EGIAAFSVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWKYFDLMRSRYGIIPTIEHCSCM 539
Query: 847 VDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNS 906
VDLLG++GYLDEAWDFI+TM KPDATIWGA L SC+IH LE AEIA +RL LEP NS
Sbjct: 540 VDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPHNS 599
Query: 907 ANYNLMMNLLAMSNRWEDVERLRHSMDEVGVKSVLVWSWIQIDQIVHVFSAEGAPHPATG 966
ANY +M+NL + NRWEDVER+R+ M V+ +WSWIQIDQ VH+F AEG HP G
Sbjct: 600 ANYMMMINLYSNLNRWEDVERIRNLMRNNRVRVQDLWSWIQIDQTVHIFYAEGKTHPDEG 659
Query: 967 EIYFELYHLVSEMKKLGYVPDTRCVYQDIDEEEKGKVLLSHTEKLAIVYGLMKTKSRAPI 1026
+IYFELY LVSEMKK GYVPDT C++QDI + EK K+L+ HTEKLA+ YGL+K K API
Sbjct: 660 DIYFELYKLVSEMKKSGYVPDTSCIHQDISDSEKEKLLMGHTEKLAMTYGLIKKKGLAPI 719
Query: 1027 RVIKNTRVCSDCHTAAKYMSLVRGREIFLRDGARFHHFREGECSCNDCW 1075
RV+KNT +CSD HT AKYMS++R REI L++GAR HHFR+G+CSCND W
Sbjct: 720 RVVKNTNICSDSHTVAKYMSVLRNREIVLQEGARVHHFRDGKCSCNDSW 768
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 495 bits (1275), Expect = e-139, Method: Compositional matrix adjust.
Identities = 258/761 (33%), Positives = 421/761 (55%), Gaps = 36/761 (4%)
Query: 315 EVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRN 374
+ HA ++K G D ++ L+ Y A+ + + D ++ +I +
Sbjct: 36 QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPD-PTIYSFSSLIYALTKA 94
Query: 375 EKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVC 434
+ + +I +F M S + + + CA++ AF GKQIH S L+ + V
Sbjct: 95 KLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQ 154
Query: 435 NCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQ 494
+ MY R ++ A +VFD M D ++ + ++++ +Y G ++ + ++M SS I+
Sbjct: 155 GSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIE 214
Query: 495 PDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRES 554
+I++WN +LSG G ++ + + + + LGF P+ +VS VL +V + +L GR
Sbjct: 215 ANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLI 274
Query: 555 HGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLF 614
HGY+++ GL D V ++++DMY K+ + +F+ + + +G C
Sbjct: 275 HGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQ--------FEMMEAGVC----- 321
Query: 615 VNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSL 674
N+ ++G S G +AL + K + NVV+WTS+
Sbjct: 322 ----------------------NAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSI 359
Query: 675 ISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGF 734
I+G QN E+L+ F +MQ +KPN T+ S+L CG + L +G+ H ++
Sbjct: 360 IAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHL 419
Query: 735 IKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHE 794
+ + +V + LIDMY+K G + ++ VF K L WN ++ GF+++G KE + +F
Sbjct: 420 LDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFES 479
Query: 795 LLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAG 854
L+ T +PD I+FT+LL+AC GL +EGWKYF MS +Y I P +EHYSCMV+LLG+AG
Sbjct: 480 LMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAG 539
Query: 855 YLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMN 914
L EA+D I+ MPF+PD+ +WGALL SCR+ +++ AEIA+ +LF LEP N Y L+ N
Sbjct: 540 KLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSN 599
Query: 915 LLAMSNRWEDVERLRHSMDEVGVKSVLVWSWIQIDQIVHVFSAEGAPHPATGEIYFELYH 974
+ A W +V+ +R+ M+ +G+K SWIQ+ V+ A HP +I ++
Sbjct: 600 IYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDE 659
Query: 975 LVSEMKKLGYVPDTRCVYQDIDEEEKGKVLLSHTEKLAIVYGLMKTKSRAPIRVIKNTRV 1034
+ EM+K G+ P+ D++E+E+ ++L H+EKLA+V+GL+ T P++VIKN R+
Sbjct: 660 ISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRI 719
Query: 1035 CSDCHTAAKYMSLVRGREIFLRDGARFHHFREGECSCNDCW 1075
C DCH K++S GREIF+RD RFHHF++G CSC D W
Sbjct: 720 CGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 488 bits (1255), Expect = e-136, Method: Compositional matrix adjust.
Identities = 310/990 (31%), Positives = 500/990 (50%), Gaps = 83/990 (8%)
Query: 128 SQLTRQNTAIVMPKLHSIYHHFNTRTSINQN--RHSHKPNSITNSPTSLALPPTDTLAKQ 185
S + +AI P++ ++ T S +N R S++P + SP T A Q
Sbjct: 12 SNMMYSASAISFPRVR-LHCSIPTEPSCRRNPFRQSNQPVQVP-SPKLACFDGVLTEAFQ 69
Query: 186 ----AQLSCISSGFCFLNE-TNKFRCLSSVKSKHAQMIKMGKIWNSDDMVKSLIFHYLEF 240
++ + F ++ E K R +S + H+++ K + D + L+F Y +
Sbjct: 70 RLDVSENNSPVEAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKC 129
Query: 241 GDFTSAAKAFFLYFSRSYADWSSFLEDYESFGGEVQELLEVWGELHGKGVIFRSRILTII 300
G A K F R+ W++ + Y S GE L ++ + +GV +
Sbjct: 130 GSLDDAEKVFDEMPDRTAFAWNTMIGAYVS-NGEPASALALYWNMRVEGVPLGLSSFPAL 188
Query: 301 LKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSDLED 360
LK C KL G E+H+ L+K G+ + AL++ Y K D+ +A +LF + D
Sbjct: 189 LKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGD 248
Query: 361 DLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHG 420
+LWN I+ + K ++LFREM + S TIV L AC GK+IH
Sbjct: 249 AVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHA 308
Query: 421 YVLKSALESN-LSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVD 479
VLKS+ S+ L VCN LI+MY+R G +
Sbjct: 309 SVLKSSTHSSELYVCNALIAMYTR-------------------------------CGKMP 337
Query: 480 VAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVL 539
A + +MN++ D++TWN L+ G+ + Y+ L M + G + + S++ ++
Sbjct: 338 QAERILRQMNNA----DVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSII 393
Query: 540 QAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIV 599
A L L G E H Y++++G D +L VG +L+DMY K + F M +++++
Sbjct: 394 AASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLI 453
Query: 600 AWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVI--IH 657
+W ++I+GY V A ++ + ++ ++ D + S++ S+ K L++ IH
Sbjct: 454 SWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVL---KSMLIVKEIH 510
Query: 658 -HMKNSGIY------------------------------PNVVTWTSLISGSLQNENYRE 686
H+ G+ +VV+WTS+IS S N N E
Sbjct: 511 CHILRKGLLDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESE 570
Query: 687 SLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLID 746
+++ F +M + + +S + +L L L G+EIHC L+ GF + +A ++D
Sbjct: 571 AVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVD 630
Query: 747 MYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAIT 806
MY+ G+L+SA+ VF + K L + MI + ++G GK A+ LF ++ PD I+
Sbjct: 631 MYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHIS 690
Query: 807 FTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM 866
F ALL AC ++GL++EG + M +Y + P EHY C+VD+LG+A + EA++F++ M
Sbjct: 691 FLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMM 750
Query: 867 PFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVE 926
+P A +W ALL +CR H E EIA++RL +LEP N N L+ N+ A RW DVE
Sbjct: 751 KTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVE 810
Query: 927 RLRHSMDEVGVKSVLVWSWIQIDQIVHVFSAEGAPHPATGEIYFELYHLVSEM-KKLGYV 985
++R M G++ SWI++D VH F+A HP + EIY +L + ++ +++GYV
Sbjct: 811 KVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLEREVGYV 870
Query: 986 PDTRCVYQDIDEEEKGKVLLSHTEKLAIVYGLMKTKSRAPIRVIKNTRVCSDCHTAAKYM 1045
DT+ V ++DE EK ++L H+E++AI YGL++T RA +R+ KN RVC DCHT K +
Sbjct: 871 ADTKFVLHNVDEGEKVQMLHGHSERIAIAYGLLRTPDRACLRITKNLRVCRDCHTFCKLV 930
Query: 1046 SLVRGREIFLRDGARFHHFREGECSCNDCW 1075
S + R+I +RD RFHHF G CSC D W
Sbjct: 931 SKLFRRDIVMRDANRFHHFESGLCSCGDSW 960
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 482 bits (1240), Expect = e-135, Method: Compositional matrix adjust.
Identities = 264/745 (35%), Positives = 422/745 (56%), Gaps = 50/745 (6%)
Query: 356 SDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEG 415
SD+++ WN I +R + A+++F+ M S+ + + M+ + G F
Sbjct: 62 SDIKE---WNVAISSYMRTGRCNEALRVFKRMPRWSSVSYN----GMISGYLRNGEFELA 114
Query: 416 KQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGL 475
+++ E +L N +I Y RN L A +F+ M + ++ SWN+M+S Y
Sbjct: 115 RKL----FDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQN 170
Query: 476 GYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSL--------- 526
G VD A S+F++M + + ++WN LLS + + + L + ++
Sbjct: 171 GCVDDARSVFDRMP----EKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLL 226
Query: 527 -GFRPNGSSV-------SVVLQAVTELRLLKYGRESHGYI--LRNGLD----YDLYVGTS 572
GF V S+ ++ V + G G I R D D++ T+
Sbjct: 227 GGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTA 286
Query: 573 LMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKP- 631
++ Y++N ++ A+E+FD M RN V+WN++++GY V ++M E ++ P
Sbjct: 287 MVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGY------VQGERMEMAKELFDVMPC 340
Query: 632 -DLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKF 690
++ +WN++++GY+ G+ EA + M + V+W ++I+G Q+ + E+L+
Sbjct: 341 RNVSTWNTMITGYAQCGKISEAKNLFDKMPKR----DPVSWAAMIAGYSQSGHSFEALRL 396
Query: 691 FIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSK 750
F+QM++E + N ++ SS L TC + L+ GK++H +K G+ +V L+ MY K
Sbjct: 397 FVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCK 456
Query: 751 SGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTAL 810
G+++ A ++F++ A K + SWN MI G++ +G G+ A+ F + G +PD T A+
Sbjct: 457 CGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAV 516
Query: 811 LAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKP 870
L+AC ++GLV++G +YF +M+ DY ++P +HY+CMVDLLG+AG L++A + ++ MPF+P
Sbjct: 517 LSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEP 576
Query: 871 DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRH 930
DA IWG LLG+ R+HG+ E AE A+ ++F +EP NS Y L+ NL A S RW DV +LR
Sbjct: 577 DAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRV 636
Query: 931 SMDEVGVKSVLVWSWIQIDQIVHVFSAEGAPHPATGEIYFELYHLVSEMKKLGYVPDTRC 990
M + GVK V +SWI+I H FS HP EI+ L L MKK GYV T
Sbjct: 637 RMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSV 696
Query: 991 VYQDIDEEEKGKVLLSHTEKLAIVYGLMKTKSRAPIRVIKNTRVCSDCHTAAKYMSLVRG 1050
V D++EEEK +++ H+E+LA+ YG+M+ S PIRVIKN RVC DCH A KYM+ + G
Sbjct: 697 VLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITG 756
Query: 1051 REIFLRDGARFHHFREGECSCNDCW 1075
R I LRD RFHHF++G CSC D W
Sbjct: 757 RLIILRDNNRFHHFKDGSCSCGDYW 781
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 478 bits (1231), Expect = e-133, Method: Compositional matrix adjust.
Identities = 278/820 (33%), Positives = 433/820 (52%), Gaps = 83/820 (10%)
Query: 297 LTIILKLCTKLM--------AFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESA 348
L+ +L+LCT L+ + VH +IK G F V+L LMN Y K A
Sbjct: 9 LSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHA 68
Query: 349 NKLFSEV------------------SDLE------------DDLLWNEIIMVKLRNEKWE 378
KLF E+ D++ D + W +I+ ++
Sbjct: 69 RKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYH 128
Query: 379 NAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLI 438
AI++ +M + T+ +L + A GK++H +++K L N+SV N L+
Sbjct: 129 KAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLL 188
Query: 439 SMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDII 498
+MY++ +A VFD M ++SSWN+MI+ + +G +D+A + F +M + DI+
Sbjct: 189 NMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQM----AERDIV 244
Query: 499 TWNCLLSGHFTHGSYQNVLTLLRGM--QSLGFRPNGSSVSVVLQAVTELRLLKYGRESHG 556
TWN ++SG G L + M SL P+ +++ VL A L L G++ H
Sbjct: 245 TWNSMISGFNQRGYDLRALDIFSKMLRDSL-LSPDRFTLASVLSACANLEKLCIGKQIHS 303
Query: 557 YILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVN 616
+I+ G D + + N+LIS Y G
Sbjct: 304 HIVTTGFDI-------------------------------SGIVLNALISMYSRCGGVET 332
Query: 617 AKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLIS 676
A++++ Q +++K + + +L+ GY G +A I +K+ +VV WT++I
Sbjct: 333 ARRLIEQRGTKDLKIE--GFTALLDGYIKLGDMNQAKNIFVSLKDR----DVVAWTAMIV 386
Query: 677 GSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIK 736
G Q+ +Y E++ F M +PNS T++++L L L +GK+IH +K+G I
Sbjct: 387 GYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIY 446
Query: 737 DAYVATGLIDMYSKSGNLKSAREVFRK-SANKTLASWNCMIMGFAIYGNGKEAILLFHEL 795
V+ LI MY+K+GN+ SA F + SW MI+ A +G+ +EA+ LF +
Sbjct: 447 SVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETM 506
Query: 796 LETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGY 855
L G +PD IT+ + +AC ++GLV +G +YFD M IIPT+ HY+CMVDL G+AG
Sbjct: 507 LMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGL 566
Query: 856 LDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNL 915
L EA +FI MP +PD WG+LL +CR+H +++ ++A+ RL LEP NS Y+ + NL
Sbjct: 567 LQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANL 626
Query: 916 LAMSNRWEDVERLRHSMDEVGVKSVLVWSWIQIDQIVHVFSAEGAPHPATGEIYFELYHL 975
+ +WE+ ++R SM + VK +SWI++ VHVF E HP EIY + +
Sbjct: 627 YSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKI 686
Query: 976 VSEMKKLGYVPDTRCVYQDIDEEEKGKVLLSHTEKLAIVYGLMKTKSRAPIRVIKNTRVC 1035
E+KK+GYVPDT V D++EE K ++L H+EKLAI +GL+ T + +R++KN RVC
Sbjct: 687 WDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVC 746
Query: 1036 SDCHTAAKYMSLVRGREIFLRDGARFHHFREGECSCNDCW 1075
+DCHTA K++S + GREI +RD RFHHF++G CSC D W
Sbjct: 747 NDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 475 bits (1222), Expect = e-132, Method: Compositional matrix adjust.
Identities = 270/817 (33%), Positives = 435/817 (53%), Gaps = 76/817 (9%)
Query: 295 RILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSE 354
R L +L+LC + G EV + GF D +L L Y C D++ A+++F E
Sbjct: 95 RTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDE 154
Query: 355 VSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHE 414
V +E L WN ++ ++ + +I LF++M S + S T + ++ + + + H
Sbjct: 155 VK-IEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHG 213
Query: 415 GKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTG 474
G+Q+HG++LKS SV N L++ Y +N +
Sbjct: 214 GEQLHGFILKSGFGERNSVGNSLVAFYLKNQR---------------------------- 245
Query: 475 LGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSS 534
VD A +F++M + D+I+WN +++G+ ++G + L++ M G + ++
Sbjct: 246 ---VDSARKVFDEMT----ERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLAT 298
Query: 535 VSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMK 594
+ V + RL+ GR H ++ + +L+DMY K L +A+ VF M
Sbjct: 299 IVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMS 358
Query: 595 NRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVS------------------- 635
+R++V++ S+I+GY +GL A K+ +MEEE I PD+ +
Sbjct: 359 DRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKR 418
Query: 636 ---W-------------NSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSL 679
W N+L+ Y+ G +EA ++ M+ ++++W ++I G
Sbjct: 419 VHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMR----VKDIISWNTIIGGYS 474
Query: 680 QNENYRESLKFF-IQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDA 738
+N E+L F + ++++ P+ T++ +L C L G+EIH ++NG+ D
Sbjct: 475 KNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR 534
Query: 739 YVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLET 798
+VA L+DMY+K G L A +F A+K L SW MI G+ ++G GKEAI LF+++ +
Sbjct: 535 HVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQA 594
Query: 799 GFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDE 858
G + D I+F +LL AC +SGLV+EGW++F+ M + I PT+EHY+C+VD+L + G L +
Sbjct: 595 GIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIK 654
Query: 859 AWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAM 918
A+ FI MP PDATIWGALL CRIH ++ AE + ++F+LEP N+ Y LM N+ A
Sbjct: 655 AYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAE 714
Query: 919 SNRWEDVERLRHSMDEVGVKSVLVWSWIQIDQIVHVFSAEGAPHPATGEIYFELYHLVSE 978
+ +WE V+RLR + + G++ SWI+I V++F A + +P T I L + +
Sbjct: 715 AEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRAR 774
Query: 979 MKKLGYVPDTRCVYQDIDEEEKGKVLLSHTEKLAIVYGLMKTKSRAPIRVIKNTRVCSDC 1038
M + GY P T+ D +E EK + L H+EKLA+ G++ + IRV KN RVC DC
Sbjct: 775 MIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDC 834
Query: 1039 HTAAKYMSLVRGREIFLRDGARFHHFREGECSCNDCW 1075
H AK+MS + REI LRD RFH F++G CSC W
Sbjct: 835 HEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust.
Identities = 290/885 (32%), Positives = 459/885 (51%), Gaps = 95/885 (10%)
Query: 244 TSAAKAFFLYFSRSYADWSSFLEDYESFGGEVQELLEVWGELHGKGVIFRSRILTIILKL 303
S A + F+ SRS W L + ++E + + ++ G+ + +LK
Sbjct: 48 VSGAPSIFISQSRSPEWWIDLLRS-KVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKA 106
Query: 304 CTKLMAFWLGVEVHASLIKRGFDFD-VHLKCALMNFYGKCRDVESANKLFSEVSDLEDDL 362
L LG ++HA + K G+ D V + L+N Y KC D + K+F +S+ + +
Sbjct: 107 VADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISE-RNQV 165
Query: 363 LWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVG---AFHEGKQIH 419
WN +I EKWE A++ FR M + + S T+V ++ AC+ + GKQ+H
Sbjct: 166 SWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVH 225
Query: 420 GYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVD 479
Y L+ E N + N L++MY + KL +S ++ S+ G
Sbjct: 226 AYGLRKG-ELNSFIINTLVAMYGKLGKL---------------ASSKVLLGSFGG----- 264
Query: 480 VAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVL 539
D++TWN +LS + L LR M G P+ ++S VL
Sbjct: 265 ---------------RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVL 309
Query: 540 QAVTELRLLKYGRESHGYILRNG-LDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNI 598
A + L +L+ G+E H Y L+NG LD + +VG++L+DMY + + + VFD M +R I
Sbjct: 310 PACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKI 369
Query: 599 VAWNSLISGYC-----------FKGLFVNAKKMLNQMEEEEIKP---------------- 631
WN++I+GY F G+ +A + N + P
Sbjct: 370 GLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHG 429
Query: 632 ---------DLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNE 682
D N+L+ YS G+ A+ I M++ ++VTW ++I+G + +E
Sbjct: 430 FVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDR----DLVTWNTMITGYVFSE 485
Query: 683 NYRESLKFFIQMQQED-----------IKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLK 731
++ ++L +MQ + +KPNS T+ ++L +C L L GKEIH +K
Sbjct: 486 HHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIK 545
Query: 732 NGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILL 791
N D V + L+DMY+K G L+ +R+VF + K + +WN +IM + ++GNG+EAI L
Sbjct: 546 NNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDL 605
Query: 792 FHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLG 851
++ G +P+ +TF ++ AAC +SG+V+EG + F M DY + P+ +HY+C+VDLLG
Sbjct: 606 LRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLG 665
Query: 852 KAGYLDEAWDFIRTMPFKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYN 910
+AG + EA+ + MP + A W +LLG+ RIH +LE EIA++ L +LEP +++Y
Sbjct: 666 RAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYV 725
Query: 911 LMMNLLAMSNRWEDVERLRHSMDEVGVKSVLVWSWIQIDQIVHVFSAEGAPHPATGEIYF 970
L+ N+ + + W+ +R +M E GV+ SWI+ VH F A + HP + ++
Sbjct: 726 LLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSG 785
Query: 971 ELYHLVSEMKKLGYVPDTRCVYQDIDEEEKGKVLLSHTEKLAIVYGLMKTKSRAPIRVIK 1030
L L M+K GYVPDT CV +++E+EK +L H+EKLAI +G++ T IRV K
Sbjct: 786 YLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAK 845
Query: 1031 NTRVCSDCHTAAKYMSLVRGREIFLRDGARFHHFREGECSCNDCW 1075
N RVC+DCH A K++S + REI LRD RFH F+ G CSC D W
Sbjct: 846 NLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 461 bits (1186), Expect = e-128, Method: Compositional matrix adjust.
Identities = 274/815 (33%), Positives = 414/815 (50%), Gaps = 83/815 (10%)
Query: 301 LKLCTKL--MAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSD- 357
L+LC L + L VH ++I GF H+ L++ Y K ++ A +LF E+S+
Sbjct: 19 LRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEP 78
Query: 358 -------------------------------LEDDLLWNEIIMVKLRNEKWENAIKLFRE 386
+ D +++N +I N +AI LF +
Sbjct: 79 DKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCK 138
Query: 387 MQFSSAKAISRTIVKMLQACAKVGAFH-EGKQIHGYVLKSALESNLSVCNCLISMYSR-- 443
M+ K + T +L A V + Q H LKS SV N L+S+YS+
Sbjct: 139 MKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCA 198
Query: 444 --NNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWN 501
+ L A +VFD + + + SW +M++ Y GY D+ L M+ + ++ +N
Sbjct: 199 SSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNM---KLVAYN 255
Query: 502 CLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRN 561
++SG+ G YQ L ++R M S G + + V++A LL+ G++ H Y+LR
Sbjct: 256 AMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRR 315
Query: 562 GLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKML 621
D+ + SL+ +Y K C G F A+ +
Sbjct: 316 E-DFSFHFDNSLVSLYYK-----------------------------C--GKFDEARAIF 343
Query: 622 NQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQN 681
+M + DLVSWN+L+SGY G EA +I MK N+++W +ISG +N
Sbjct: 344 EKMPAK----DLVSWNALLSGYVSSGHIGEAKLIFKEMKEK----NILSWMIMISGLAEN 395
Query: 682 ENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVA 741
E LK F M++E +P S +++C LG NG++ H LK GF
Sbjct: 396 GFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAG 455
Query: 742 TGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQ 801
LI MY+K G ++ AR+VFR SWN +I +G+G EA+ ++ E+L+ G +
Sbjct: 456 NALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIR 515
Query: 802 PDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWD 861
PD IT +L AC ++GLV++G KYFDSM T Y I P +HY+ ++DLL ++G +A
Sbjct: 516 PDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAES 575
Query: 862 FIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNR 921
I ++PFKP A IW ALL CR+HG++E IA+ +LF L P + Y L+ N+ A + +
Sbjct: 576 VIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQ 635
Query: 922 WEDVERLRHSMDEVGVKSVLVWSWIQIDQIVHVFSAEGAPHPATGEIYFELYHLVSEMKK 981
WE+V R+R M + GVK + SWI+++ VH F + HP +Y L L EM++
Sbjct: 636 WEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRR 695
Query: 982 LGYVPDTRCVYQDIDEE-EKGKVLLSHTEKLAIVYGLMKTKSRAPIRVIKNTRVCSDCHT 1040
LGYVPDT V D++ + K +L +H+EK+A+ +GLMK IR+ KN R C DCH
Sbjct: 696 LGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHN 755
Query: 1041 AAKYMSLVRGREIFLRDGARFHHFREGECSCNDCW 1075
+++S V R+I LRD RFHHFR GECSC + W
Sbjct: 756 FFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 454 bits (1168), Expect = e-126, Method: Compositional matrix adjust.
Identities = 253/813 (31%), Positives = 431/813 (53%), Gaps = 79/813 (9%)
Query: 298 TIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSD 357
++L+ C+ L ++ + K G + + L++ + + V+ A ++F + D
Sbjct: 41 ALLLERCSSLKELR---QILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPI-D 96
Query: 358 LEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQ 417
+ ++L++ ++ + + A++ F M++ + + +L+ C GK+
Sbjct: 97 SKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKE 156
Query: 418 IHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGY 477
IHG ++KS +L L +MY++ ++ A +VFD M +
Sbjct: 157 IHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPER----------------- 199
Query: 478 VDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSV 537
D+++WN +++G+ +G + L +++ M +P+ ++
Sbjct: 200 ------------------DLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVS 241
Query: 538 VLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRN 597
VL AV+ LRL+ G+E HGY +R+G D + + T+L+DMY K L+ A+++FD M RN
Sbjct: 242 VLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERN 301
Query: 598 IVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSW--------------------- 636
+V+WNS+I Y A + +M +E +KP VS
Sbjct: 302 VVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHK 361
Query: 637 --------------NSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNE 682
NSL+S Y + A + +++ +V+W ++I G QN
Sbjct: 362 LSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSR----TLVSWNAMILGFAQNG 417
Query: 683 NYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVAT 742
++L +F QM+ +KP++ T S++ L + + K IH + +++ K+ +V T
Sbjct: 418 RPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTT 477
Query: 743 GLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQP 802
L+DMY+K G + AR +F + + + +WN MI G+ +G GK A+ LF E+ + +P
Sbjct: 478 ALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKP 537
Query: 803 DAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDF 862
+ +TF ++++AC +SGLVE G K F M +Y+I +++HY MVDLLG+AG L+EAWDF
Sbjct: 538 NGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDF 597
Query: 863 IRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRW 922
I MP KP ++GA+LG+C+IH ++ +AE A+ RLF+L P + + L+ N+ ++ W
Sbjct: 598 IMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMW 657
Query: 923 EDVERLRHSMDEVGVKSVLVWSWIQIDQIVHVFSAEGAPHPATGEIYFELYHLVSEMKKL 982
E V ++R SM G++ S ++I VH F + HP + +IY L L+ +K+
Sbjct: 658 EKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEA 717
Query: 983 GYVPDTRCVYQDIDEEEKGKVLLSHTEKLAIVYGLMKTKSRAPIRVIKNTRVCSDCHTAA 1042
GYVPDT V ++ + K ++L +H+EKLAI +GL+ T + I V KN RVC+DCH A
Sbjct: 718 GYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNAT 776
Query: 1043 KYMSLVRGREIFLRDGARFHHFREGECSCNDCW 1075
KY+SLV GREI +RD RFHHF+ G CSC D W
Sbjct: 777 KYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 452 bits (1164), Expect = e-126, Method: Compositional matrix adjust.
Identities = 290/913 (31%), Positives = 459/913 (50%), Gaps = 88/913 (9%)
Query: 170 SPTSLALPPTDTLAKQAQLSCISSGFCFLNETNKFRCLSSVKSKHAQMIKMGKIWNSDDM 229
SP LA T + Q C + L + + +K H + K G + N
Sbjct: 11 SPMVLATTTTTKPSLLNQSKCTKATPSSLKNC---KTIDELKMFHRSLTKQG-LDNDVST 66
Query: 230 VKSLIFHYLEFG--DFTSAAKAFFLYFSRSYAD---WSSFLEDYESFGGEVQELLEVWGE 284
+ L+ E G + S AK F S SY ++S + Y S G E + ++
Sbjct: 67 ITKLVARSCELGTRESLSFAKEVF-ENSESYGTCFMYNSLIRGYAS-SGLCNEAILLFLR 124
Query: 285 LHGKGVIFRSRILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRD 344
+ G+ L C K A G+++H ++K G+ D+ ++ +L++FY +C +
Sbjct: 125 MMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGE 184
Query: 345 VESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKL-FREMQFSSAKAISRTIVKML 403
++SA K+F E+S+ + + W +I R + ++A+ L FR ++ S T+V ++
Sbjct: 185 LDSARKVFDEMSE-RNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVI 243
Query: 404 QACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLS 463
ACAK+ G++++ ++ S +E N + + L+ MY + N +++A R+FD NL
Sbjct: 244 SACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLD 303
Query: 464 SWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGM 523
N+M S+Y G A +FN M S ++PD I+ +LS
Sbjct: 304 LCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRIS---MLSA----------------- 343
Query: 524 QSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCL 583
+ + ++LR + +G+ HGY+LRNG + + +L+DMY+K
Sbjct: 344 ---------------ISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQ 388
Query: 584 QNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGY 643
A +FD M N+ +V WNS+++GY G A + M E+ I VSWN+++SG
Sbjct: 389 DTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNI----VSWNTIISG- 443
Query: 644 SIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQ-QEDIKPN 702
L+ GSL + E+++ F MQ QE + +
Sbjct: 444 ------------------------------LVQGSL----FEEAIEVFCSMQSQEGVNAD 469
Query: 703 STTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFR 762
TM S+ CG LG L K I+ KNG D + T L+DM+S+ G+ +SA +F
Sbjct: 470 GVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFN 529
Query: 763 KSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEE 822
N+ +++W I A+ GN + AI LF +++E G +PD + F L AC + GLV++
Sbjct: 530 SLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQ 589
Query: 823 GWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSC 882
G + F SM + + P HY CMVDLLG+AG L+EA I MP +P+ IW +LL +C
Sbjct: 590 GKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAAC 649
Query: 883 RIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVGVKSVLV 942
R+ G++E A A+ ++ L P + +Y L+ N+ A + RW D+ ++R SM E G++
Sbjct: 650 RVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPG 709
Query: 943 WSWIQIDQIVHVFSAEGAPHPATGEIYFELYHLVSEMKKLGYVPDTRCVYQDIDEEEKGK 1002
S IQI H F++ HP I L + LG+VPD V D+DE+EK
Sbjct: 710 TSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIF 769
Query: 1003 VLLSHTEKLAIVYGLMKTKSRAPIRVIKNTRVCSDCHTAAKYMSLVRGREIFLRDGARFH 1062
+L H+EKLA+ YGL+ + IR++KN RVCSDCH+ AK+ S V REI LRD RFH
Sbjct: 770 MLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFH 829
Query: 1063 HFREGECSCNDCW 1075
+ R+G+CSC D W
Sbjct: 830 YIRQGKCSCGDFW 842
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1076 | ||||||
| 225454494 | 913 | PREDICTED: pentatricopeptide repeat-cont | 0.839 | 0.989 | 0.619 | 0.0 | |
| 356522522 | 911 | PREDICTED: pentatricopeptide repeat-cont | 0.840 | 0.992 | 0.612 | 0.0 | |
| 356560286 | 911 | PREDICTED: pentatricopeptide repeat-cont | 0.841 | 0.993 | 0.596 | 0.0 | |
| 147856413 | 1408 | hypothetical protein VITISV_004914 [Viti | 0.754 | 0.576 | 0.596 | 0.0 | |
| 297810061 | 1305 | hypothetical protein ARALYDRAFT_327675 [ | 0.802 | 0.661 | 0.554 | 0.0 | |
| 334186267 | 768 | pentatricopeptide repeat-containing prot | 0.712 | 0.998 | 0.587 | 0.0 | |
| 255564751 | 695 | pentatricopeptide repeat-containing prot | 0.629 | 0.974 | 0.594 | 0.0 | |
| 358347383 | 561 | Pentatricopeptide repeat-containing prot | 0.484 | 0.928 | 0.637 | 0.0 | |
| 224127907 | 498 | predicted protein [Populus trichocarpa] | 0.462 | 1.0 | 0.716 | 0.0 | |
| 215768832 | 842 | unnamed protein product [Oryza sativa Ja | 0.728 | 0.931 | 0.450 | 0.0 |
| >gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1203 bits (3112), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/918 (61%), Positives = 716/918 (77%), Gaps = 15/918 (1%)
Query: 160 HSHKP--NSITNSPTSLALPPTDTLAKQAQLSCISSGFCFLNETNKFRCLSSVKSKHAQM 217
H H P N +T+ P PT L + S +++N L+SVK HAQM
Sbjct: 9 HLHPPLQNPLTHKPIK---TPTSKLYLDSHSS---------DDSNVITSLTSVKMMHAQM 56
Query: 218 IKMGKIWNSDDMVKSLIFHYLEFGDFTSAAKAFFLYFSRSYADWSSFLEDYESFGGEVQE 277
IK+ + WN D K+LI YL FGDF SAA F++ R+Y W+SF+E+++S G +
Sbjct: 57 IKLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHI 116
Query: 278 LLEVWGELHGKGVIFRSRILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCALMN 337
+LEV+ ELHGKGV+F S + ++ LK CT++M WLG+E+H LIKRGFD DV+L+CALMN
Sbjct: 117 VLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMN 176
Query: 338 FYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISR 397
FYG+C +E AN++F E+ + E LLWNE I++ L++EK + ++LFR+MQFS KA +
Sbjct: 177 FYGRCWGLEKANQVFHEMPNPEA-LLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETA 235
Query: 398 TIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSM 457
TIV++LQAC K+GA + KQIHGYV + L+S++S+CN LISMYS+N KLELA RVFDSM
Sbjct: 236 TIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSM 295
Query: 458 KDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVL 517
++ N SSWNSMISSY LG+++ AWSLF ++ SS ++PDI+TWNCLLSGHF HG + VL
Sbjct: 296 ENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVL 355
Query: 518 TLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMY 577
+L+ MQ GF+PN SS++ VLQA++EL L G+E+HGY+LRNG D D+YVGTSL+DMY
Sbjct: 356 NILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMY 415
Query: 578 VKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWN 637
VKN L +AQ VFDNMKNRNI AWNSL+SGY FKG+F +A ++LNQME+E IKPDLV+WN
Sbjct: 416 VKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWN 475
Query: 638 SLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQE 697
++SGY++WG KEAL ++H K+ G+ PNVV+WT+LISGS Q N R+SLKFF QMQQE
Sbjct: 476 GMISGYAMWGCGKEALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQE 535
Query: 698 DIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSA 757
+ PNS +++ LL+ C L LLQ GKEIHCL ++NGFI+D +VAT LIDMYSKS +LK+A
Sbjct: 536 GVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNA 595
Query: 758 REVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNS 817
+VFR+ NKTLASWNCMIMGFAI+G GKEAI +F+E+ + G PDAITFTALL+ACKNS
Sbjct: 596 HKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNS 655
Query: 818 GLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGA 877
GL+ EGWKYFDSM TDY I+P +EHY CMVDLLG+AGYLDEAWD I TMP KPDATIWGA
Sbjct: 656 GLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGA 715
Query: 878 LLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVGV 937
LLGSCRIH +L++AE A++ LFKLEP NSANY LMMNL ++ NRWED++ LR M GV
Sbjct: 716 LLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGV 775
Query: 938 KSVLVWSWIQIDQIVHVFSAEGAPHPATGEIYFELYHLVSEMKKLGYVPDTRCVYQDIDE 997
++ VWSWIQI+Q VHVFS++ PHP G+IYFELY LVSEMKKLGYVPD CVYQ++DE
Sbjct: 776 RNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDE 835
Query: 998 EEKGKVLLSHTEKLAIVYGLMKTKSRAPIRVIKNTRVCSDCHTAAKYMSLVRGREIFLRD 1057
EK K+LLSHTEKLAI YGL+K K+ PIRVIKNTR+CSDCH+AAKY+SLV+ RE+FLRD
Sbjct: 836 VEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLRD 895
Query: 1058 GARFHHFREGECSCNDCW 1075
G RFHHFREG+CSCND W
Sbjct: 896 GVRFHHFREGKCSCNDFW 913
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1165 bits (3014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/909 (61%), Positives = 699/909 (76%), Gaps = 5/909 (0%)
Query: 169 NSPTSLALPPTDT-LAKQAQLSCISSGFC-FLNETNKFRCLSSVKSKHAQMIKMGKIWNS 226
+SP+S++L ++T + Q S S F F + R L+SV+ HAQMIKM K N
Sbjct: 6 HSPSSVSLGTSETQIVSSPQFS--SPKFSPFFHPLGGIRTLNSVRELHAQMIKMPKKGNL 63
Query: 227 DDMVKSLIFHYLEFGDFTSAAKAFFLYFSRSYADWSSFLEDYESFGGEVQELLEVWGELH 286
M S++ +YLEFGDF SA K FF+ F+R+Y W+SFLE++ SFGG+ E+LEV+ ELH
Sbjct: 64 VTMDGSMMRNYLEFGDFESATKVFFVGFARNYLLWNSFLEEFASFGGDSHEILEVFKELH 123
Query: 287 GKGVIFRSRILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVE 346
KGV F S+ LT++LK+C LM WLG+EVHA L+KRGF DVHL CAL+N Y KC ++
Sbjct: 124 DKGVKFDSKALTVVLKICLALMELWLGMEVHACLLKRGFQVDVHLSCALINLYEKCLGID 183
Query: 347 SANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQAC 406
AN++F E + L++D LWN I+M LR+E+WE+A++L R MQ +SAKA TIVK+LQAC
Sbjct: 184 RANQVFDE-TPLQEDFLWNTIVMANLRSERWEDALELSRRMQSASAKATDGTIVKLLQAC 242
Query: 407 AKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWN 466
K+ A +EGKQIHGYV++ SN S+CN ++SMYSRNN+LELA VFDS +DHNL+SWN
Sbjct: 243 GKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAVFDSTEDHNLASWN 302
Query: 467 SMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSL 526
S+ISSY G ++ AW LF +M SS I+PDIITWN LLSGH GSY+NVLT +R +QS
Sbjct: 303 SIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLSGHLLQGSYENVLTNIRSLQSA 362
Query: 527 GFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNA 586
GF+P+ S++ LQAV EL G+E HGYI+R+ L+YD+YV TSL+DMY+KNDCL+ A
Sbjct: 363 GFKPDSCSITSALQAVIELGYFNLGKEIHGYIMRSKLEYDVYVCTSLVDMYIKNDCLEKA 422
Query: 587 QEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIW 646
+ VF + KN+NI AWNSLISGY +KGLF NA+K+L QM+EE IK DLV+WNSLVSGYS+
Sbjct: 423 EVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLIQMKEEGIKADLVTWNSLVSGYSMS 482
Query: 647 GQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTM 706
G S+EAL +I+ +K+ G+ PNVV+WT++ISG QNENY ++L+FF QMQ+E++KPNSTT+
Sbjct: 483 GCSEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYTDALQFFSQMQEENVKPNSTTI 542
Query: 707 SSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN 766
S+LL+ C G LL+ G+EIHC +K+GF+ D Y+AT LIDMYSK G LK A EVFR
Sbjct: 543 STLLRACAGPSLLKKGEEIHCFSMKHGFVDDIYIATALIDMYSKGGKLKVAHEVFRNIKE 602
Query: 767 KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKY 826
KTL WNCM+MG+AIYG+G+E LF + +TG +PDAITFTALL+ CKNSGLV +GWKY
Sbjct: 603 KTLPCWNCMMMGYAIYGHGEEVFTLFDNMCKTGIRPDAITFTALLSGCKNSGLVMDGWKY 662
Query: 827 FDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHG 886
FDSM TDY+I PTIEHYSCMVDLLGKAG+LDEA DFI MP K DA+IWGA+L +CR+H
Sbjct: 663 FDSMKTDYSINPTIEHYSCMVDLLGKAGFLDEALDFIHAMPQKADASIWGAVLAACRLHK 722
Query: 887 HLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVGVKSVLVWSWI 946
++ AEIA+R LF+LEP NSANY LMMN+ + RW DVERL+ SM +GVK VWSWI
Sbjct: 723 DIKIAEIAARNLFRLEPYNSANYVLMMNIYSTFERWGDVERLKESMTAMGVKIPNVWSWI 782
Query: 947 QIDQIVHVFSAEGAPHPATGEIYFELYHLVSEMKKLGYVPDTRCVYQDIDEEEKGKVLLS 1006
Q+ Q +HVFS EG HP GEIYF+LY L+SE+KKLGYVPDT CV+Q+ID+ EK KVLLS
Sbjct: 783 QVRQTIHVFSTEGKSHPEEGEIYFDLYQLISEIKKLGYVPDTNCVHQNIDDSEKEKVLLS 842
Query: 1007 HTEKLAIVYGLMKTKSRAPIRVIKNTRVCSDCHTAAKYMSLVRGREIFLRDGARFHHFRE 1066
HTEKLA+ YGLMK K PIRV+KNTR+C DCHTAAKY+SL R REIFLRDG RFHHF
Sbjct: 843 HTEKLAMTYGLMKIKGGTPIRVVKNTRICQDCHTAAKYISLARNREIFLRDGGRFHHFMN 902
Query: 1067 GECSCNDCW 1075
GECSCND W
Sbjct: 903 GECSCNDRW 911
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356560286|ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1136 bits (2938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/910 (59%), Positives = 690/910 (75%), Gaps = 5/910 (0%)
Query: 168 TNSPTSLALPPTDT-LAKQAQLSCISSGFC-FLNETNKFRCLSSVKSKHAQMIKMGKIWN 225
++SP+S++L ++ L Q S F F + + R L+SV+ HAQ+IKM K N
Sbjct: 5 SHSPSSISLGMSEAQLVSSPQFS--PPKFSPFFHPFGEIRTLNSVRELHAQIIKMPKKRN 62
Query: 226 SDDMVKSLIFHYLEFGDFTSAAKAFFLYFSRSYADWSSFLEDYESFGGEVQELLEVWGEL 285
M S++ +YL+FGDF SA K FF+ F+R+Y W+SF+E++ SFGG+ E+L V+ EL
Sbjct: 63 LVTMDGSMMRNYLQFGDFESATKVFFVGFARNYLLWNSFIEEFASFGGDSHEILAVFKEL 122
Query: 286 HGKGVIFRSRILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDV 345
H KGV F S+ LT++LK+C LM WLG+EVHA L+KRGF DVHL CAL+N Y K +
Sbjct: 123 HDKGVKFDSKALTVVLKICLALMELWLGMEVHACLVKRGFHVDVHLSCALINLYEKYLGI 182
Query: 346 ESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQA 405
+ AN++F E + L++D LWN I+M LR+EKWE+A++LFR MQ +SAKA TIVK+LQA
Sbjct: 183 DGANQVFDE-TPLQEDFLWNTIVMANLRSEKWEDALELFRRMQSASAKATDGTIVKLLQA 241
Query: 406 CAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSW 465
C K+ A +EGKQIHGYV++ SN S+CN ++SMYSRNN+LELA FDS +DHN +SW
Sbjct: 242 CGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARVAFDSTEDHNSASW 301
Query: 466 NSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQS 525
NS+ISSY ++ AW L +M SS ++PDIITWN LLSGH GSY+NVLT R +QS
Sbjct: 302 NSIISSYAVNDCLNGAWDLLQEMESSGVKPDIITWNSLLSGHLLQGSYENVLTNFRSLQS 361
Query: 526 LGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQN 585
GF+P+ S++ LQAV L G+E HGYI+R+ L+YD+YV TSL+D Y+KNDCL
Sbjct: 362 AGFKPDSCSITSALQAVIGLGCFNLGKEIHGYIMRSKLEYDVYVCTSLVDKYIKNDCLDK 421
Query: 586 AQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSI 645
A+ VF + KN+NI AWNSLISGY +KGLF NA+K+LNQM+EE IKPDLV+WNSLVSGYS+
Sbjct: 422 AEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLNQMKEEGIKPDLVTWNSLVSGYSM 481
Query: 646 WGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTT 705
G+S+EAL +I+ +K+ G+ PNVV+WT++ISG QNENY ++L+FF QMQ+E++KPNSTT
Sbjct: 482 SGRSEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYMDALQFFSQMQEENVKPNSTT 541
Query: 706 MSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSA 765
+ +LL+ C G LL+ G+EIHC +++GF+ D Y+AT LIDMY K G LK A EVFR
Sbjct: 542 ICTLLRACAGSSLLKIGEEIHCFSMRHGFLDDIYIATALIDMYGKGGKLKVAHEVFRNIK 601
Query: 766 NKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWK 825
KTL WNCM+MG+AIYG+G+E LF E+ +TG +PDAITFTALL+ CKNSGLV +GWK
Sbjct: 602 EKTLPCWNCMMMGYAIYGHGEEVFTLFDEMRKTGVRPDAITFTALLSGCKNSGLVMDGWK 661
Query: 826 YFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIH 885
YFDSM TDYNI PTIEHYSCMVDLLGKAG+LDEA DFI +P K DA+IWGA+L +CR+H
Sbjct: 662 YFDSMKTDYNINPTIEHYSCMVDLLGKAGFLDEALDFIHAVPQKADASIWGAVLAACRLH 721
Query: 886 GHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVGVKSVLVWSW 945
++ AEIA+R L +LEP NSANY LMMN+ + +RW DVERL+ SM +GVK VWSW
Sbjct: 722 KDIKIAEIAARNLLRLEPYNSANYALMMNIYSTFDRWGDVERLKESMTALGVKIPNVWSW 781
Query: 946 IQIDQIVHVFSAEGAPHPATGEIYFELYHLVSEMKKLGYVPDTRCVYQDIDEEEKGKVLL 1005
IQ+ Q +HVFS EG HP GEIYFELY L+SE+KKLGYV D CV+Q+ID+ EK KVLL
Sbjct: 782 IQVKQTIHVFSTEGKSHPEEGEIYFELYQLISEIKKLGYVLDINCVHQNIDDSEKEKVLL 841
Query: 1006 SHTEKLAIVYGLMKTKSRAPIRVIKNTRVCSDCHTAAKYMSLVRGREIFLRDGARFHHFR 1065
SHTEKLA+ YGLMKTK +PIRV+KNTR+C DCHT AKY+SL R REIFLRDG RFHHF
Sbjct: 842 SHTEKLAMTYGLMKTKGGSPIRVVKNTRICHDCHTTAKYISLARNREIFLRDGGRFHHFM 901
Query: 1066 EGECSCNDCW 1075
GECSC D W
Sbjct: 902 NGECSCKDRW 911
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1072 bits (2771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/859 (59%), Positives = 643/859 (74%), Gaps = 47/859 (5%)
Query: 217 MIKMGKIWNSDDMVKSLIFHYLEFGDFTSAAKAFFLYFSRSYADWSSFLEDYESFGGEVQ 276
MIK+ + WN D K+LI YL FGDF SAA F++ R+Y W+SF+E+++S G +
Sbjct: 597 MIKLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLH 656
Query: 277 ELLEVWGELHGKGVIFRSRILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCALM 336
+LEV+ ELHGKGV+F S + ++ LK CT++M WLG+E+H LIKRGFD DV+L+CALM
Sbjct: 657 IVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALM 716
Query: 337 NFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAIS 396
NFYG+C +E AN++F E+ + E LLWNE I++ L++EK + ++LFR+MQFS KA +
Sbjct: 717 NFYGRCWGLEKANQVFHEMPNPEA-LLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAET 775
Query: 397 RTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDS 456
TIV++LQAC K+GA + KQIHGYV + L+S++S+CN LISMYS+N KLELA RVFDS
Sbjct: 776 ATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDS 835
Query: 457 MKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNV 516
M++ N SSWNSMISSY LG+++ AWSLF ++ SS ++PDI+TWNCLLSGHF HG + V
Sbjct: 836 MENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEV 895
Query: 517 LTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDM 576
L +L+ MQ GF+PN SS++ VLQA++EL L G+E+HGY+LRNG D D+YVGTSL+DM
Sbjct: 896 LNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDM 955
Query: 577 YVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSW 636
YVKN L +AQ VFDNMKNRNI A W
Sbjct: 956 YVKNHSLXSAQAVFDNMKNRNIFA-----------------------------------W 980
Query: 637 NSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQ 696
NSLVSGYS G ++AL +++ M+ GI P++VTW +ISG R++
Sbjct: 981 NSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFM------- 1033
Query: 697 EDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKS 756
PNS +++ LL+ C L LLQ GKEIHCL ++NGFI+D +VAT LIDMYSKS +LK+
Sbjct: 1034 ----PNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKN 1089
Query: 757 AREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKN 816
A +VFR+ NKTLASWNCMIMGFAI+G GKEAI +F+E+ + G PDAITFTALL+ACKN
Sbjct: 1090 AHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKN 1149
Query: 817 SGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWG 876
SGL+ EGWKYFDSM TDY I+P +EHY CMVDLLG+AGYLDEAWD I TMP KPDATIWG
Sbjct: 1150 SGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWG 1209
Query: 877 ALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936
ALLGSCRIH +L +AE A++ LFKLEP NSANY LMMNL ++ NRWED++ LR M G
Sbjct: 1210 ALLGSCRIHKNLXFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAG 1269
Query: 937 VKSVLVWSWIQIDQIVHVFSAEGAPHPATGEIYFELYHLVSEMKKLGYVPDTRCVYQDID 996
V++ VWSWIQI+Q VHVFS++ PHP G+IYFELY LVSEMKKLGYVPD CVYQ++D
Sbjct: 1270 VRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMD 1329
Query: 997 EEEKGKVLLSHTEKLAIVYGLMKTKSRAPIRVIKNTRVCSDCHTAAKYMSLVRGREIFLR 1056
E EK K+LLSHTEKLAI YGL+K K+ PIRVIKNTR+CSDCH+AAKY+SLV+ RE+FLR
Sbjct: 1330 EVEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLR 1389
Query: 1057 DGARFHHFREGECSCNDCW 1075
DG RFHHFREG+CSCND W
Sbjct: 1390 DGVRFHHFREGKCSCNDFW 1408
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297810061|ref|XP_002872914.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp. lyrata] gi|297318751|gb|EFH49173.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1012 bits (2617), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/865 (55%), Positives = 635/865 (73%), Gaps = 2/865 (0%)
Query: 212 SKHAQMIKMGKIWNSDDMVKSLIFHYLEFGDFTSAAKAFFLYFSRSYADWSSFLEDYESF 271
+ HA+M+K+ + + + K LI YLEFG+F A+ FFL F R+ W FLE E F
Sbjct: 442 TTHARMMKLIDRFELEFISKCLITRYLEFGEFGYASAVFFLGFPRNQVSWRDFLEKAEDF 501
Query: 272 GGEVQELLEVWGELHGKGVIFRSRILTIILKLCTKLMAFWLGVEVHASLIKRGFD-FDVH 330
G E ++LE + L KGV F +L ++ ++C LM +LG +H LIKRG D D
Sbjct: 502 GVEKYKVLEEFVRLQNKGVNFDEVVLAMVFRICAVLMYRFLGFTIHGGLIKRGLDNSDTR 561
Query: 331 LKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFS 390
+ ALM FYG+C ++ ANK+F E+ DDL WNEI+MV L++ WE A+KLFR M+FS
Sbjct: 562 VVSALMGFYGRCVSLDLANKIFDEMPK-RDDLAWNEIVMVNLQSGNWEKAVKLFRVMRFS 620
Query: 391 SAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELA 450
AKA T+VK+LQ C+ F +G+QIHGYVL+ ESN+S+CN LI MYSRN KLE +
Sbjct: 621 GAKAYDSTMVKLLQVCSNKEGFAQGRQIHGYVLRLGFESNVSMCNSLIVMYSRNGKLESS 680
Query: 451 TRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTH 510
+VF+SM D NLSSWNS++SSYT LGYVD A L ++M + ++PDI+TWN LLSG+ +
Sbjct: 681 RKVFNSMVDRNLSSWNSIVSSYTRLGYVDDAMGLLDEMETCGLKPDIVTWNSLLSGYASK 740
Query: 511 GSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVG 570
++ + +L+ +Q G +PN SS+S +LQAV E L+K G+ HGY++RN L YD+YV
Sbjct: 741 ALSRDAIAVLKRIQIAGLKPNTSSISSLLQAVYEPGLVKLGKAIHGYVIRNQLWYDVYVE 800
Query: 571 TSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIK 630
T+L+DMY+K L A+ VFD M +NIVAWNSLISG + GL A+ ++++ME+E IK
Sbjct: 801 TTLIDMYIKTGYLPYARMVFDMMDEKNIVAWNSLISGLSYTGLLKEAEALISRMEKEGIK 860
Query: 631 PDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKF 690
+ V+WNSLVSGY+ WG++++AL ++ MK +G+ PNVV+WT+++SG +N N+ LK
Sbjct: 861 SNAVTWNSLVSGYATWGKTEKALAVVGKMKKNGVEPNVVSWTAILSGCSKNGNFGNGLKI 920
Query: 691 FIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSK 750
F++MQ+E + PNS T+SSLL+ G L LL +GKE+H CLKN +DA+VAT L+DMY+K
Sbjct: 921 FLKMQEEGVSPNSATISSLLRILGCLSLLYSGKEVHSFCLKNNLTRDAHVATALVDMYAK 980
Query: 751 SGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTAL 810
SG+L+SA E+F NK LASWNCMIMG+A++ G+E I +F+ +LE G +PDAITFT++
Sbjct: 981 SGDLQSAAEIFWGIKNKPLASWNCMIMGYAMFRRGEEGIAVFNAMLEAGIEPDAITFTSV 1040
Query: 811 LAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKP 870
L+ CKNSGLV EGWKYFD M + Y +IPTIEH SCMV+LLG++GYLDEAWDFIRTMP KP
Sbjct: 1041 LSVCKNSGLVREGWKYFDLMRSHYGVIPTIEHCSCMVELLGRSGYLDEAWDFIRTMPLKP 1100
Query: 871 DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRH 930
DATIWGA L SC+IH LE AEIA +RL LEP NSANY +M+NL + NRW DVER+R+
Sbjct: 1101 DATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPHNSANYMMMINLYSNLNRWGDVERIRN 1160
Query: 931 SMDEVGVKSVLVWSWIQIDQIVHVFSAEGAPHPATGEIYFELYHLVSEMKKLGYVPDTRC 990
SM V+ +WSWIQIDQ VH+F AEG HP GEIYFELY LVSEMKK GY+PDTRC
Sbjct: 1161 SMSNNRVRVQDLWSWIQIDQTVHIFYAEGKAHPDEGEIYFELYKLVSEMKKSGYMPDTRC 1220
Query: 991 VYQDIDEEEKGKVLLSHTEKLAIVYGLMKTKSRAPIRVIKNTRVCSDCHTAAKYMSLVRG 1050
++Q++ E EK K+L+ HTEKLA+ YGL+K K APIRV+KNT +CSDCHT AKY+S++R
Sbjct: 1221 IHQNVSESEKEKLLMGHTEKLAMTYGLIKKKGIAPIRVVKNTNLCSDCHTVAKYISVLRN 1280
Query: 1051 REIFLRDGARFHHFREGECSCNDCW 1075
REI L++GAR HHFR+G+CSCN+ W
Sbjct: 1281 REIVLQEGARVHHFRDGKCSCNNSW 1305
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334186267|ref|NP_192012.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|223635642|sp|Q9SV26.2|PP297_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g01030, mitochondrial; Flags: Precursor gi|332656570|gb|AEE81970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 942 bits (2436), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/769 (58%), Positives = 575/769 (74%), Gaps = 2/769 (0%)
Query: 308 MAFWLGVEVHASLIKRGFD-FDVHLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNE 366
M +LG+ +H LIKRG D D + A M FYG+C + ANKLF E+ DDL WNE
Sbjct: 1 MYRFLGLTIHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANKLFDEMPK-RDDLAWNE 59
Query: 367 IIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSA 426
I+MV LR+ WE A++LFREMQFS AKA T+VK+LQ C+ F EG+QIHGYVL+
Sbjct: 60 IVMVNLRSGNWEKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLG 119
Query: 427 LESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFN 486
LESN+S+CN LI MYSRN KLEL+ +VF+SMKD NLSSWNS++SSYT LGYVD A L +
Sbjct: 120 LESNVSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLD 179
Query: 487 KMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELR 546
+M ++PDI+TWN LLSG+ + G ++ + +L+ MQ G +P+ SS+S +LQAV E
Sbjct: 180 EMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPG 239
Query: 547 LLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLIS 606
LK G+ HGYILRN L YD+YV T+L+DMY+K L A+ VFD M +NIVAWNSL+S
Sbjct: 240 HLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVS 299
Query: 607 GYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYP 666
G + L +A+ ++ +ME+E IKPD ++WNSL SGY+ G+ ++AL +I MK G+ P
Sbjct: 300 GLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKEKGVAP 359
Query: 667 NVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIH 726
NVV+WT++ SG +N N+R +LK FI+MQ+E + PN+ TMS+LL+ G L LL +GKE+H
Sbjct: 360 NVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLHSGKEVH 419
Query: 727 CLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGK 786
CL+ I DAYVAT L+DMY KSG+L+SA E+F NK+LASWNCM+MG+A++G G+
Sbjct: 420 GFCLRKNLICDAYVATALVDMYGKSGDLQSAIEIFWGIKNKSLASWNCMLMGYAMFGRGE 479
Query: 787 EAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCM 846
E I F +LE G +PDAITFT++L+ CKNSGLV+EGWKYFD M + Y IIPTIEH SCM
Sbjct: 480 EGIAAFSVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWKYFDLMRSRYGIIPTIEHCSCM 539
Query: 847 VDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNS 906
VDLLG++GYLDEAWDFI+TM KPDATIWGA L SC+IH LE AEIA +RL LEP NS
Sbjct: 540 VDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPHNS 599
Query: 907 ANYNLMMNLLAMSNRWEDVERLRHSMDEVGVKSVLVWSWIQIDQIVHVFSAEGAPHPATG 966
ANY +M+NL + NRWEDVER+R+ M V+ +WSWIQIDQ VH+F AEG HP G
Sbjct: 600 ANYMMMINLYSNLNRWEDVERIRNLMRNNRVRVQDLWSWIQIDQTVHIFYAEGKTHPDEG 659
Query: 967 EIYFELYHLVSEMKKLGYVPDTRCVYQDIDEEEKGKVLLSHTEKLAIVYGLMKTKSRAPI 1026
+IYFELY LVSEMKK GYVPDT C++QDI + EK K+L+ HTEKLA+ YGL+K K API
Sbjct: 660 DIYFELYKLVSEMKKSGYVPDTSCIHQDISDSEKEKLLMGHTEKLAMTYGLIKKKGLAPI 719
Query: 1027 RVIKNTRVCSDCHTAAKYMSLVRGREIFLRDGARFHHFREGECSCNDCW 1075
RV+KNT +CSD HT AKYMS++R REI L++GAR HHFR+G+CSCND W
Sbjct: 720 RVVKNTNICSDSHTVAKYMSVLRNREIVLQEGARVHHFRDGKCSCNDSW 768
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255564751|ref|XP_002523370.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223537458|gb|EEF39086.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 838 bits (2164), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/691 (59%), Positives = 527/691 (76%), Gaps = 14/691 (2%)
Query: 139 MPKLHSIYHHFNTRTSINQNRHSHKPNSITNSPTSLALPPTDTLAKQAQLSCISSG---- 194
M KL Y +N +NQN +H S +SP SL+L PT T + S
Sbjct: 1 MDKLAPFYSPYNP--PLNQNPLTHNSKSRISSPPSLSLAPTPTSPDTTTTTTPLSASPSP 58
Query: 195 -------FCFLNETNKFRCLSSVKSKHAQMIKMGKIWNSDDMVKSLIFHYLEFGDFTSAA 247
F L+ ++ + L S+ + HAQ+IK +WNSD ++LI YLE GDF S+A
Sbjct: 59 QQMNVPKFQSLDSSSDVKTLDSINAMHAQLIKTCSMWNSDSNARTLITSYLELGDFRSSA 118
Query: 248 KAFFLYFSRSYADWSSFLEDYESFGGEVQELLEVWGELHGKGVIFRSRILTIILKLCTKL 307
FF+ F+R+Y WSSF+E++E+ GG+ ++L V+ ELH KGV F S ++T++LK+C ++
Sbjct: 119 MVFFVGFARNYVMWSSFMEEFENCGGDPIQVLNVFKELHSKGVTFDSGMVTVVLKICIRV 178
Query: 308 MAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEI 367
M WLG+EVHASLIKRGF+ D +++ AL+++Y +C +E AN++F ++ D D L WNE
Sbjct: 179 MDLWLGLEVHASLIKRGFELDTYVRSALLSYYERCWSLEIANQVFHDMPD-RDGLFWNEA 237
Query: 368 IMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSAL 427
IM+ L+NE++ NAI+LFR MQFS AKA + T++KMLQAC K A +EGKQIHGYV+K AL
Sbjct: 238 IMINLKNERFGNAIELFRGMQFSFAKADASTVLKMLQACGKEEALNEGKQIHGYVIKHAL 297
Query: 428 ESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNK 487
ESNL + N LISMYSRN K+ L+ RVFDSMKDHNLSSWNS+ISSYT LGY++ AW LF++
Sbjct: 298 ESNLWISNSLISMYSRNGKIILSRRVFDSMKDHNLSSWNSIISSYTALGYLNGAWKLFHE 357
Query: 488 MNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRL 547
M SS ++PDIITWNCLLSGH HGSY+ VL +L+ MQ GFRPN SS++ VLQ VTELRL
Sbjct: 358 MESSSVKPDIITWNCLLSGHALHGSYKEVLMILQKMQVTGFRPNSSSITSVLQTVTELRL 417
Query: 548 LKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISG 607
LK G+ HGY++RN L+ DLYV SL+DMYVKN+CL +Q VFDNMKNRNIVAWNSLI+G
Sbjct: 418 LKIGKGIHGYVIRNRLNPDLYVEASLLDMYVKNNCLATSQAVFDNMKNRNIVAWNSLITG 477
Query: 608 YCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPN 667
Y +KGLF +AK++LN+M+EE I+ D+V+WN LVSGYSIWG ++EAL +I+ +K+SG+ PN
Sbjct: 478 YAYKGLFDDAKRLLNKMKEEGIRADIVTWNGLVSGYSIWGHNEEALAVINEIKSSGLTPN 537
Query: 668 VVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHC 727
VV+WT+LISG QN NY+ESL+FFIQMQQE IKPNSTT+SSLL+TCGGL LL+ GKEIHC
Sbjct: 538 VVSWTALISGCSQNGNYKESLEFFIQMQQEGIKPNSTTVSSLLKTCGGLSLLKKGKEIHC 597
Query: 728 LCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKE 787
L +K+GF D Y+AT L+DMYSKSGNLKSAREVF+++ NKTLA WNCMIMGFAIYG GKE
Sbjct: 598 LSVKSGFTGDIYIATALVDMYSKSGNLKSAREVFKRTKNKTLACWNCMIMGFAIYGLGKE 657
Query: 788 AILLFHELLETGFQPDAITFTALLAACKNSG 818
AI L+ E+L G PD+ITFTALL+ACKNS
Sbjct: 658 AISLYDEMLGAGILPDSITFTALLSACKNSA 688
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358347383|ref|XP_003637737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355503672|gb|AES84875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1987), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/560 (63%), Positives = 439/560 (78%)
Query: 516 VLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMD 575
VLT R + SLGF+P+ SV+ LQAV EL K G+E HGYI+R+ L+YD+YV TSL+D
Sbjct: 2 VLTSFRSLHSLGFKPDSCSVTSALQAVIELGFFKLGKEIHGYIMRSNLNYDVYVCTSLVD 61
Query: 576 MYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVS 635
MYVKNDCL+ AQ V KN+N+ AWNSLISGY FKG F A K+LNQM EE I PDLV+
Sbjct: 62 MYVKNDCLEKAQAVLHRAKNKNVCAWNSLISGYSFKGQFGEAVKLLNQMVEEGITPDLVT 121
Query: 636 WNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQ 695
WN LVSGYS+ G+ EAL II+ +K+SGI PNVV+WT+LISG QNE Y ++LK F QMQ
Sbjct: 122 WNGLVSGYSMQGRIDEALTIINRIKSSGITPNVVSWTALISGCSQNEKYMDALKIFSQMQ 181
Query: 696 QEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLK 755
E++KPNSTT+ SLL C G LL+ G+E+HC +K GF+ D YVAT LIDMYS++G LK
Sbjct: 182 AENVKPNSTTICSLLCACAGPSLLKKGEELHCFSMKLGFVDDIYVATALIDMYSEAGKLK 241
Query: 756 SAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACK 815
A VF K KTL WNCM+MG+AI+ +G+E ++L+ ++ E +PDAITFTALL+ACK
Sbjct: 242 VAYNVFNKIQEKTLPCWNCMMMGYAIHSHGEEVMILYDKMRERHIRPDAITFTALLSACK 301
Query: 816 NSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIW 875
NSGLV+EGWKYFDSM DYNI+PTIEHY CMVDLLGK+G+LDEA FI TMP KPDA+IW
Sbjct: 302 NSGLVDEGWKYFDSMQEDYNIVPTIEHYCCMVDLLGKSGFLDEASHFIETMPIKPDASIW 361
Query: 876 GALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935
GALL SC+IH +++ AEIA+R+LFK+EP NSANY LMMNL + NRW VERL+HSM +
Sbjct: 362 GALLASCKIHKNIKLAEIAARKLFKMEPNNSANYVLMMNLYSSLNRWVAVERLKHSMTVL 421
Query: 936 GVKSVLVWSWIQIDQIVHVFSAEGAPHPATGEIYFELYHLVSEMKKLGYVPDTRCVYQDI 995
+K VWSW Q++Q +HVFS EG PHP GEIYFELY L+SE++KLGY PD CV Q+I
Sbjct: 422 AMKIPPVWSWTQVNQSIHVFSTEGRPHPEEGEIYFELYQLISEIRKLGYAPDLNCVCQNI 481
Query: 996 DEEEKGKVLLSHTEKLAIVYGLMKTKSRAPIRVIKNTRVCSDCHTAAKYMSLVRGREIFL 1055
D+ EK K+L+SHTEKLA+VYG+MK K +PIR++KNTR+C DCHT AKY+SLVR REI L
Sbjct: 482 DDNEKEKILMSHTEKLAMVYGVMKMKGGSPIRIVKNTRICFDCHTVAKYISLVRKREILL 541
Query: 1056 RDGARFHHFREGECSCNDCW 1075
RDG RFHHF+ G+C+CND W
Sbjct: 542 RDGGRFHHFKNGKCACNDRW 561
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224127907|ref|XP_002320193.1| predicted protein [Populus trichocarpa] gi|222860966|gb|EEE98508.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/500 (71%), Positives = 419/500 (83%), Gaps = 2/500 (0%)
Query: 576 MYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVS 635
MYVKNDCL ++Q +FDNMKN+NIVAWNSLISGY FKG F +AK++LN+M+EE IKPDL++
Sbjct: 1 MYVKNDCLTSSQAIFDNMKNKNIVAWNSLISGYSFKGHFDHAKRLLNRMKEEGIKPDLIT 60
Query: 636 WNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQ 695
WNSLV+GYS+ G +KEAL +IH +K SG+ PNVV+WT+LISG QN NY ES++ F+QMQ
Sbjct: 61 WNSLVAGYSMRGHTKEALALIHDIKISGLTPNVVSWTALISGCSQNGNYSESIEAFVQMQ 120
Query: 696 QEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLK 755
+E IKPNS T+SSLL+TCGGL LLQ GKEIHCL ++ FI+D YVAT LID YSKSG+L+
Sbjct: 121 EEGIKPNSATISSLLRTCGGLSLLQKGKEIHCLSIRKSFIEDLYVATALIDTYSKSGDLE 180
Query: 756 SAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACK 815
SA +VF SA KTLASWNCMIMGFAI G G+E I L + G PDAITFTALL+ CK
Sbjct: 181 SAHKVFW-SAEKTLASWNCMIMGFAINGCGREVIALLDGMQRAGILPDAITFTALLSGCK 239
Query: 816 NSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIW 875
NSGLVEEGWK FD MS DY I PTIEHYSCM DLLG+AGYLDEAWDFI+TMP KPDA++W
Sbjct: 240 NSGLVEEGWKCFDMMSNDYGIKPTIEHYSCMADLLGRAGYLDEAWDFIQTMPIKPDASVW 299
Query: 876 GALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935
GA+LGSCRIHG++E+AEIA++ LFKLEP NSANY LM++L AMSNRWEDV+R++ MD
Sbjct: 300 GAMLGSCRIHGNIEFAEIAAKELFKLEPYNSANYVLMLSLYAMSNRWEDVDRIKDLMDTR 359
Query: 936 GVKSVLVWSWIQIDQIVHVFSAEGAPHPATGEIYFELYHLVSEMKKLGYVPDTRCVYQDI 995
G+K VWSWIQIDQ VH+FSA G PH GEIY+ELY LVSE+KK GY+PD CVYQ+I
Sbjct: 360 GIKPRQVWSWIQIDQRVHLFSAGGIPHQDEGEIYYELYQLVSELKKFGYLPDVNCVYQNI 419
Query: 996 DEEEKGKVLLSHTEKLAIVYGLMKTKSRAPIRVIKNTRVCSDCHTAAKYMSLVRGREIFL 1055
DEEEK K+LLSHTEKLAI YGL+KT S APIRVIKNTR+CSDCHTAAK +SLVR REIFL
Sbjct: 420 DEEEKVKMLLSHTEKLAITYGLIKTSS-APIRVIKNTRICSDCHTAAKLISLVRSREIFL 478
Query: 1056 RDGARFHHFREGECSCNDCW 1075
RDG RFHHF+ G+CSCND W
Sbjct: 479 RDGVRFHHFKAGKCSCNDYW 498
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|215768832|dbj|BAH01061.1| unnamed protein product [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/795 (45%), Positives = 514/795 (64%), Gaps = 11/795 (1%)
Query: 292 FRSRILTIILKLCTKL--------MAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCR 343
+ + +L +L+ C L +A L ++H+ ++ G D + CAL++ +
Sbjct: 42 YSAGVLVSLLRDCADLHGDDTDHRVARRLAPQLHSLAVRTGLSRDPRVTCALVDLLARLG 101
Query: 344 DVESANKLFSEVSD--LEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVK 401
S +L E ++ +D +LWN+ + + E+W+ AI +FREMQ A T +
Sbjct: 102 RGPSCARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQARGVPADGYTCAR 161
Query: 402 MLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHN 461
+L AC + GA EG+ +H Y LK AL+++ V L MY+ N + ATRV D+M +
Sbjct: 162 VLHACGRAGALREGRAVHAYALKLALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGS 221
Query: 462 LSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLR 521
+ WN++++ LG VD A L +M+ S +P++ TWN +LSG HG + L ++
Sbjct: 222 VVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVA 281
Query: 522 GMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKND 581
M G RP+ ++VS +L++V LL++G E H + LRN L+ D+Y GT+L+DMY K
Sbjct: 282 SMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCG 341
Query: 582 CLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVS 641
L AQ+V D +++RN+ WNSL++GY G F A +++ M++ + PD+ +WN L++
Sbjct: 342 RLDCAQKVLDALEHRNLTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLIT 401
Query: 642 GYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKP 701
GYS+ GQS +A++++ +K +G+ PNVV+WTSLISGS N Y +S F +MQ++ ++P
Sbjct: 402 GYSMNGQSSQAVLLLRQIKAAGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQP 461
Query: 702 NSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVF 761
+ TMS LL+ C GL L + GKE+HC L+ + D V+T LIDMYSK G+L SA+ +F
Sbjct: 462 SLVTMSVLLRACAGLALQKKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIF 521
Query: 762 RKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVE 821
K L N M+ G A++G G+EAI LFH++ +G +PD+ITFTALL AC++ GLV
Sbjct: 522 ESIQQKNLVLCNAMLTGLAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVT 581
Query: 822 EGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGS 881
EGW+YFDSM T Y + PT E+Y+CMVDLL + GYLDEA DFI P P A+ WGALL
Sbjct: 582 EGWEYFDSMETKYGVKPTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTG 641
Query: 882 CRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVGVKSVL 941
C IHG+L AE+A+R LF LEP NSANY LMMNL +++ E L+++M GV S
Sbjct: 642 CSIHGNLALAEVAARNLFILEPYNSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRP 701
Query: 942 VWSWIQIDQIVHVFSAEGAPHPATGEIYFELYHLVSEMKKLGYVPDTRCVYQDIDEEEKG 1001
WSWIQI+Q +HVF +G PHP T EIY EL LV ++KK GYVPDT C+ ++ EEEK
Sbjct: 702 GWSWIQIEQGIHVFEVDGKPHPETAEIYEELIRLVFQIKKAGYVPDTSCIAYNVQEEEKE 761
Query: 1002 KVLLSHTEKLAIVYGLMKTK-SRAPIRVIKNTRVCSDCHTAAKYMSLVRGREIFLRDGAR 1060
K+LL HTEKLAI YGL+++ SRAP+RV+KNTR+C+DCH AK++S + R+I LRD R
Sbjct: 762 KLLLGHTEKLAITYGLIRSDASRAPVRVMKNTRMCNDCHEVAKHISSLCDRQIILRDAVR 821
Query: 1061 FHHFREGECSCNDCW 1075
FHHF +G+CSCND W
Sbjct: 822 FHHFVDGKCSCNDYW 836
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1076 | ||||||
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.647 | 0.892 | 0.349 | 8.5e-120 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.698 | 0.863 | 0.335 | 1.2e-115 | |
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.687 | 0.941 | 0.328 | 3.3e-111 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.660 | 0.718 | 0.317 | 4.9e-110 | |
| TAIR|locus:2032840 | 937 | AT1G16480 "AT1G16480" [Arabido | 0.788 | 0.905 | 0.303 | 6.1e-110 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.697 | 0.842 | 0.322 | 1.2e-106 | |
| TAIR|locus:2096414 | 882 | AT3G03580 [Arabidopsis thalian | 0.792 | 0.967 | 0.299 | 3.1e-106 | |
| TAIR|locus:2119440 | 1064 | AT4G13650 [Arabidopsis thalian | 0.794 | 0.803 | 0.286 | 6.5e-106 | |
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.690 | 0.902 | 0.328 | 1.2e-104 | |
| TAIR|locus:2078653 | 825 | AT3G02010 [Arabidopsis thalian | 0.404 | 0.527 | 0.375 | 4e-104 |
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1179 (420.1 bits), Expect = 8.5e-120, P = 8.5e-120
Identities = 260/743 (34%), Positives = 411/743 (55%)
Query: 356 SDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEG 415
SD+++ WN I +R + A+++F+ M S+ + + M+ + G F
Sbjct: 62 SDIKE---WNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNG----MISGYLRNGEFELA 114
Query: 416 KQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGL 475
+++ E +L N +I Y RN L A +F+ M + ++ SWN+M+S Y
Sbjct: 115 RKL----FDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQN 170
Query: 476 GYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSL--------- 526
G VD A S+F++M D+ +WN LLS + + + L + ++
Sbjct: 171 GCVDDARSVFDRMPEKN---DV-SWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLL 226
Query: 527 -GFRPNGSSV-------SVVLQAVTELRLLKYGRESHGYI--LRNGLD----YDLYVGTS 572
GF V S+ ++ V + G G I R D D++ T+
Sbjct: 227 GGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTA 286
Query: 573 LMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPD 632
++ Y++N ++ A+E+FD M RN V+WN++++GY AK++ + M +
Sbjct: 287 MVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVS-- 344
Query: 633 LVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFI 692
+WN++++GY+ G+ EA + M P V+W ++I+G Q+ + E+L+ F+
Sbjct: 345 --TWNTMITGYAQCGKISEAKNLFDKMPKRD--P--VSWAAMIAGYSQSGHSFEALRLFV 398
Query: 693 QMQQEDIKPNSTTMSSXXXXXXXXXXXXXXKEIHCLCLKNGFIKDAYVATGLIDMYSKSG 752
QM++E + N ++ SS K++H +K G+ +V L+ MY K G
Sbjct: 399 QMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCG 458
Query: 753 NLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLA 812
+++ A ++F++ A K + SWN MI G++ +G G+ A+ F + G +PD T A+L+
Sbjct: 459 SIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLS 518
Query: 813 ACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDA 872
AC ++GLV++G +YF +M+ DY ++P +HY+CMVDLLG+AG L++A + ++ MPF+PDA
Sbjct: 519 ACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDA 578
Query: 873 TIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932
IWG LLG+ R+HG+ E AE A+ ++F +EP NS Y L+ NL A S RW DV +LR M
Sbjct: 579 AIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRM 638
Query: 933 DEVGVKSVLVWSWIQIDQIVHVFSAEGAPHPATGEIYFELYHLVSEMKKLGYVPDTRCVY 992
+ GVK V +SWI+I H FS HP EI+ L L MKK GYV T V
Sbjct: 639 RDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVL 698
Query: 993 QDIDEEEKGKVLLSHTEKLAIVYGLMKTKSRAPIRVIKNTRVCSDCHTAAKYMSLVRGRE 1052
D++EEEK +++ H+E+LA+ YG+M+ S PIRVIKN RVC DCH A KYM+ + GR
Sbjct: 699 HDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRL 758
Query: 1053 IFLRDGARFHHFREGECSCNDCW 1075
I LRD RFHHF++G CSC D W
Sbjct: 759 IILRDNNRFHHFKDGSCSCGDYW 781
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1140 (406.4 bits), Expect = 1.2e-115, P = 1.2e-115
Identities = 258/770 (33%), Positives = 427/770 (55%)
Query: 313 GVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKL 372
G EV + GF D +L L Y C D++ A+++F EV +E L WN I+M +L
Sbjct: 113 GKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVK-IEKALFWN-ILMNEL 170
Query: 373 -RNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNL 431
++ + +I LF++M S + S T + ++ + + + H G+Q+HG++LKS
Sbjct: 171 AKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERN 230
Query: 432 SVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSS 491
SV N L++ Y +N +++ A +VFD M + ++ SWNS+I+ Y G + S+F +M S
Sbjct: 231 SVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVS 290
Query: 492 RIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYG 551
I+ D+ T + +G + +++L R + S+G + S + ++ K G
Sbjct: 291 GIEIDLATIVSVFAGC----ADSRLISLGRAVHSIGVKACFSREDRFCNTLLDM-YSKCG 345
Query: 552 R-ESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNI---VAWNSLISG 607
+S + R D + TS++ Y + A ++F+ M+ I V + +
Sbjct: 346 DLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLN 405
Query: 608 YCFKGLFVNAKKMLNQ-MEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYP 666
C + ++ K +++ ++E ++ D+ N+L+ Y+ G +EA ++ M+
Sbjct: 406 CCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMR----VK 461
Query: 667 NVVTWTSLISGSLQNENYRESLKFF-IQMQQEDIKPNSTTMSSXXXXXXXXXXXXXXKEI 725
++++W ++I G +N E+L F + ++++ P+ T++ +EI
Sbjct: 462 DIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREI 521
Query: 726 HCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNG 785
H ++NG+ D +VA L+DMY+K G L A +F A+K L SW MI G+ ++G G
Sbjct: 522 HGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFG 581
Query: 786 KEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSC 845
KEAI LF+++ + G + D I+F +LL AC +SGLV+EGW++F+ M + I PT+EHY+C
Sbjct: 582 KEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYAC 641
Query: 846 MVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN 905
+VD+L + G L +A+ FI MP PDATIWGALL CRIH ++ AE + ++F+LEP N
Sbjct: 642 IVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPEN 701
Query: 906 SANYNLMMNLLAMSNRWEDVERLRHSMDEVGVKSVLVWSWIQIDQIVHVFSAEGAPHPAT 965
+ Y LM N+ A + +WE V+RLR + + G++ SWI+I V++F A + +P T
Sbjct: 702 TGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPET 761
Query: 966 GEIYFELYHLVSEMKKLGYVPDTRCVYQDIDEEEKGKVLLSHTEKLAIVYGLMKTKSRAP 1025
I L + + M + GY P T+ D +E EK + L H+EKLA+ G++ +
Sbjct: 762 ENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKI 821
Query: 1026 IRVIKNTRVCSDCHTAAKYMSLVRGREIFLRDGARFHHFREGECSCNDCW 1075
IRV KN RVC DCH AK+MS + REI LRD RFH F++G CSC W
Sbjct: 822 IRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871
|
|
| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1098 (391.6 bits), Expect = 3.3e-111, P = 3.3e-111
Identities = 253/771 (32%), Positives = 405/771 (52%)
Query: 316 VHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNE 375
VH +IK G F V+L LMN Y K A KLF E+ L WN ++ +
Sbjct: 36 VHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMP-LRTAFSWNTVLSAYSKRG 94
Query: 376 KWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALE-SNLSVC 434
++ + F Q ++S T M+ +G +H+ ++ G ++K +E + ++
Sbjct: 95 DMDSTCEFFD--QLPQRDSVSWTT--MIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLT 150
Query: 435 NCLISMYSRNNKLELATRVFDSMKD----HNLSSWNSMISSYTGLGYVDVAWSLFNKMNS 490
N L S+ + +E +V + N+S NS+++ Y G +A +F++M
Sbjct: 151 NVLASV-AATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRM-- 207
Query: 491 SRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKY 550
+ DI +WN +++ H G + M S +S Q +LR L
Sbjct: 208 --VVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRAL-- 263
Query: 551 GRESHGYILRNGL-DYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNI----VAWNSLI 605
+ +LR+ L D + S++ + L +++ ++ + N+LI
Sbjct: 264 --DIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALI 321
Query: 606 SGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIY 665
S Y G A++++ Q +++K + + +L+ GY G +A I +K+
Sbjct: 322 SMYSRCGGVETARRLIEQRGTKDLK--IEGFTALLDGYIKLGDMNQAKNIFVSLKDR--- 376
Query: 666 PNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSXXXXXXXXXXXXXXKEI 725
+VV WT++I G Q+ +Y E++ F M +PNS T+++ K+I
Sbjct: 377 -DVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQI 435
Query: 726 HCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRK-SANKTLASWNCMIMGFAIYGN 784
H +K+G I V+ LI MY+K+GN+ SA F + SW MI+ A +G+
Sbjct: 436 HGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGH 495
Query: 785 GKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYS 844
+EA+ LF +L G +PD IT+ + +AC ++GLV +G +YFD M IIPT+ HY+
Sbjct: 496 AEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYA 555
Query: 845 CMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC 904
CMVDL G+AG L EA +FI MP +PD WG+LL +CR+H +++ ++A+ RL LEP
Sbjct: 556 CMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPE 615
Query: 905 NSANYNLMMNLLAMSNRWEDVERLRHSMDEVGVKSVLVWSWIQIDQIVHVFSAEGAPHPA 964
NS Y+ + NL + +WE+ ++R SM + VK +SWI++ VHVF E HP
Sbjct: 616 NSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPE 675
Query: 965 TGEIYFELYHLVSEMKKLGYVPDTRCVYQDIDEEEKGKVLLSHTEKLAIVYGLMKTKSRA 1024
EIY + + E+KK+GYVPDT V D++EE K ++L H+EKLAI +GL+ T +
Sbjct: 676 KNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKT 735
Query: 1025 PIRVIKNTRVCSDCHTAAKYMSLVRGREIFLRDGARFHHFREGECSCNDCW 1075
+R++KN RVC+DCHTA K++S + GREI +RD RFHHF++G CSC D W
Sbjct: 736 TLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
|
|
| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 986 (352.1 bits), Expect = 4.9e-110, Sum P(2) = 4.9e-110
Identities = 232/731 (31%), Positives = 375/731 (51%)
Query: 353 SEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAF 412
++ S + + + N+ + L + ++ +K F +M S + T + ML KV +
Sbjct: 272 NDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSL 331
Query: 413 HEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSY 472
G+Q+H LK L+ L+V N LI+MY + K A VFD+M + +L SWNS+I+
Sbjct: 332 ALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGI 391
Query: 473 TGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNG 532
G A LF ++ ++PD T +L S L+L + + + N
Sbjct: 392 AQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAA---SSLPEGLSLSKQVHVHAIKINN 448
Query: 533 SSVSVVLQAVTELRLLKYGRE---SHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEV 589
S S V A+ + Y R IL ++DL ++M Y ++ ++
Sbjct: 449 VSDSFVSTALIDA----YSRNRCMKEAEILFERHNFDLVAWNAMMAGYTQSHDGHKTLKL 504
Query: 590 FDNMKNRNIVAWNSLISGYCFKGL-FVNAKKMLNQMEEEEIKP--DLVSWNS--LVSGYS 644
F M + + + FK F+ A Q+ IK DL W S ++ Y
Sbjct: 505 FALMHKQGERS-DDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYV 563
Query: 645 IWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNST 704
G A + P+ V WT++ISG ++N + F QM+ + P+
Sbjct: 564 KCGDMSAAQFAFDSIP----VPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEF 619
Query: 705 TMSSXXXXXXXXXXXXXXKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKS 764
T+++ ++IH LK D +V T L+DMY+K G++ A +F++
Sbjct: 620 TIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRI 679
Query: 765 ANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGW 824
+ +WN M++G A +G GKE + LF ++ G +PD +TF +L+AC +SGLV E +
Sbjct: 680 EMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAY 739
Query: 825 KYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRI 884
K+ SM DY I P IEHYSC+ D LG+AG + +A + I +M + A+++ LL +CR+
Sbjct: 740 KHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRV 799
Query: 885 HGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVGVKSVLVWS 944
G E + + +L +LEP +S+ Y L+ N+ A +++W++++ R M VK +S
Sbjct: 800 QGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFS 859
Query: 945 WIQIDQIVHVFSAEGAPHPATGEIYFELYHLVSEMKKLGYVPDTRCVYQDIDEEEKGKVL 1004
WI++ +H+F + + T IY ++ ++ ++K+ GYVP+T D++EEEK + L
Sbjct: 860 WIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERAL 919
Query: 1005 LSHTEKLAIVYGLMKTKSRAPIRVIKNTRVCSDCHTAAKYMSLVRGREIFLRDGARFHHF 1064
H+EKLA+ +GL+ T PIRVIKN RVC DCH A KY++ V REI LRD RFH F
Sbjct: 920 YYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRF 979
Query: 1065 REGECSCNDCW 1075
++G CSC D W
Sbjct: 980 KDGICSCGDYW 990
|
|
| TAIR|locus:2032840 AT1G16480 "AT1G16480" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1086 (387.4 bits), Expect = 6.1e-110, P = 6.1e-110
Identities = 264/870 (30%), Positives = 431/870 (49%)
Query: 214 HAQMIKMGKIWNSDDMVKSLIFH-YLEFGDFTSAAKAFFLYFSRSYADWSSFLEDYESFG 272
H + K G + SD V + I H Y +G + + K F R+ W+S + Y S
Sbjct: 82 HGFVAKSGLL--SDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGY-SDK 138
Query: 273 GEVQELLEVWGELHGKGVIFRSRXXXXXXXXXXXXMAFWLGVEVHASLIKRGFDFDVHLK 332
GE +E+++++ + G+GV LG ++ ++K G + + ++
Sbjct: 139 GEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVE 198
Query: 333 CALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSA 392
+L++ G +V+ AN +F ++S+ D + WN I +N E + ++F M+
Sbjct: 199 NSLISMLGSMGNVDYANYIFDQMSE-RDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHD 257
Query: 393 KAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATR 452
+ S T+ +L V G+ IHG V+K +S + VCN L+ MY+ + A
Sbjct: 258 EVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANL 317
Query: 453 VFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGS 512
VF M +L SWNS+++S+ G A L M SS + +T+ L+ FT
Sbjct: 318 VFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDF 377
Query: 513 YQNVLTLLRGMQSL-GFRPNGSSVSVVLQAVTELRLLKYGRESHGY-ILRNGLDYDLYVG 570
++ +L G+ + G N ++ A+ + K G S +L D+
Sbjct: 378 FEKG-RILHGLVVVSGLFYN----QIIGNALVSM-YGKIGEMSESRRVLLQMPRRDVVAW 431
Query: 571 TSLMDMYVKNDCLQNAQEVFDNMK----NRNIVAWNSLISGYCFKG-LFVNAKKMLNQME 625
+L+ Y +++ A F M+ + N + S++S G L K + +
Sbjct: 432 NALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIV 491
Query: 626 EEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYR 685
+ D NSL++ Y+ G + + + + N N++TW ++++ + + +
Sbjct: 492 SAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNR----NIITWNAMLAANAHHGHGE 547
Query: 686 ESLKFFIQMQQEDIKPNSTTMSSXXXXXXXXXXXXXXKEIHCLCLKNGFIKDAYVATGLI 745
E LK +M+ + + + S +++H L +K GF D+++
Sbjct: 548 EVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAA 607
Query: 746 DMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAI 805
DMYSK G + ++ S N++L SWN +I +G +E FHE+LE G +P +
Sbjct: 608 DMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHV 667
Query: 806 TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRT 865
TF +LL AC + GLV++G Y+D ++ D+ + P IEH C++DLLG++G L EA FI
Sbjct: 668 TFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISK 727
Query: 866 MPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDV 925
MP KP+ +W +LL SC+IHG+L+ A+ L KLEP + + Y L N+ A + RWEDV
Sbjct: 728 MPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDV 787
Query: 926 ERLRHSMDEVGVKSVLVWSWIQIDQIVHVFSAEGAPHPATGEIYFELYHLVSEMKKLGYV 985
E +R M +K SW+++ V F HP T EIY +L + +K+ GYV
Sbjct: 788 ENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYV 847
Query: 986 PDTRCVYQDIDEEEKGKVLLSHTEKLAIVYGLMKTKSRAPIRVIKNTRVCSDCHTAAKYM 1045
DT QD DEE+K L +H+E+LA+ Y LM T + +R+ KN R+CSDCH+ K++
Sbjct: 848 ADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFV 907
Query: 1046 SLVRGREIFLRDGARFHHFREGECSCNDCW 1075
S V GR I LRD RFHHF G CSC D W
Sbjct: 908 SRVIGRRIVLRDQYRFHHFERGLCSCKDYW 937
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1055 (376.4 bits), Expect = 1.2e-106, P = 1.2e-106
Identities = 255/790 (32%), Positives = 426/790 (53%)
Query: 312 LGVEVHASLIKRGFDFD-VHLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMV 370
LG ++HA + K G+ D V + L+N Y KC D + K+F +S+ + + WN +I
Sbjct: 115 LGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISE-RNQVSWNSLISS 173
Query: 371 KLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVG---AFHEGKQIHGYVLKSAL 427
EKWE A++ FR M + + S T+V ++ AC+ + GKQ+H Y L+
Sbjct: 174 LCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG- 232
Query: 428 ESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNK 487
E N + N L++MY + KL + + S +L +WN+++SS + A +
Sbjct: 233 ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLRE 292
Query: 488 MNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGS--SVSVVLQAVTEL 545
M ++PD T + +L S+ +L + + + + NGS S V A+ ++
Sbjct: 293 MVLEGVEPDEFTISSVLPAC----SHLEMLRTGKELHAYALK-NGSLDENSFVGSALVDM 347
Query: 546 RLLKYGRESHGYILRNGLDYDLYVG--TSLMDMYVKNDCLQNAQEVFDNMK-NRNIVAWN 602
+ G + +G+ +D +G +++ Y +N+ + A +F M+ + ++A +
Sbjct: 348 -YCNCKQVLSGRRVFDGM-FDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANS 405
Query: 603 SLISGY---CFK-GLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHH 658
+ ++G C + G F + + + + + D N+L+ YS G+ A+ I
Sbjct: 406 TTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGK 465
Query: 659 MKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQED-----------IKPNSTTMS 707
M++ ++VTW ++I+G + +E++ ++L +MQ + +KPNS T+
Sbjct: 466 MEDR----DLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLM 521
Query: 708 SXXXXXXXXXXXXXXKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANK 767
+ KEIH +KN D V + L+DMY+K G L+ +R+VF + K
Sbjct: 522 TILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQK 581
Query: 768 TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYF 827
+ +WN +IM + ++GNG+EAI L ++ G +P+ +TF ++ AAC +SG+V+EG + F
Sbjct: 582 NVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIF 641
Query: 828 DSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMP--FKPDATIWGALLGSCRIH 885
M DY + P+ +HY+C+VDLLG+AG + EA+ + MP F A W +LLG+ RIH
Sbjct: 642 YVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNK-AGAWSSLLGASRIH 700
Query: 886 GHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVGVKSVLVWSW 945
+LE EIA++ L +LEP +++Y L+ N+ + + W+ +R +M E GV+ SW
Sbjct: 701 NNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSW 760
Query: 946 IQIDQIVHVFSAEGAPHPATGEIYFELYHLVSEMKKLGYVPDTRCVYQDIDEEEKGKVLL 1005
I+ VH F A + HP + ++ L L M+K GYVPDT CV +++E+EK +L
Sbjct: 761 IEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLC 820
Query: 1006 SHTEKLAIVYGLMKTKSRAPIRVIKNTRVCSDCHTAAKYMSLVRGREIFLRDGARFHHFR 1065
H+EKLAI +G++ T IRV KN RVC+DCH A K++S + REI LRD RFH F+
Sbjct: 821 GHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFK 880
Query: 1066 EGECSCNDCW 1075
G CSC D W
Sbjct: 881 NGTCSCGDYW 890
|
|
| TAIR|locus:2096414 AT3G03580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1051 (375.0 bits), Expect = 3.1e-106, P = 3.1e-106
Identities = 263/879 (29%), Positives = 457/879 (51%)
Query: 207 LSSVKSKHAQMIKMGKIWNSDDMVKSLIFHYLEFGDFTSAAKAFFLYF-SRSYADWSSFL 265
L+ ++ HA +I +G + +SD LI Y F + S+ F +++ W+S +
Sbjct: 20 LNELRRIHALVISLG-LDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSII 78
Query: 266 EDYESFGGEVQELLEVWGELHGKGVIFRSRXXXXXXXXXXXXMAFWLGVEVHASLIKRGF 325
+ S G E LE +G+L V +G V+ ++ GF
Sbjct: 79 RAF-SKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGF 137
Query: 326 DFDVHLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFR 385
+ D+ + AL++ Y + + A ++F E+ + D + WN +I + +E A++++
Sbjct: 138 ESDLFVGNALVDMYSRMGLLTRARQVFDEMP-VRDLVSWNSLISGYSSHGYYEEALEIYH 196
Query: 386 EMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNN 445
E++ S S T+ +L A + +G+ +HG+ LKS + S + V N L++MY +
Sbjct: 197 ELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFR 256
Query: 446 KLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLS 505
+ A RVFD M + S+N+MI Y L V+ + +F + N + +PD++T + +L
Sbjct: 257 RPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLE-NLDQFKPDLLTVSSVLR 315
Query: 506 --GHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGL 563
GH S + M GF + ++++ + + R+ + N +
Sbjct: 316 ACGHLRDLSLAKYI--YNYMLKAGFVLESTVRNILIDVYAKCGDMITARD-----VFNSM 368
Query: 564 DY-DLYVGTSLMDMYVKNDCLQNAQEVFDNM----KNRNIVAWNSLISGYCFKGLFVNAK 618
+ D S++ Y+++ L A ++F M + + + + LIS K
Sbjct: 369 ECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGK 428
Query: 619 KMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGS 678
+ + + I DL N+L+ Y+ G+ ++L I M +G + VTW ++IS
Sbjct: 429 GLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSM-GTG---DTVTWNTVISAC 484
Query: 679 LQNENYRESLKFFIQMQQEDIKPNSTTMSSXXXXXXXXXXXXXXKEIHCLCLKNGFIKDA 738
++ ++ L+ QM++ ++ P+ T KEIHC L+ G+ +
Sbjct: 485 VRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESEL 544
Query: 739 YVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLET 798
+ LI+MYSK G L+++ VF + + + + +W MI + +YG G++A+ F ++ ++
Sbjct: 545 QIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKS 604
Query: 799 GFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDE 858
G PD++ F A++ AC +SGLV+EG F+ M T Y I P IEHY+C+VDLL ++ + +
Sbjct: 605 GIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISK 664
Query: 859 AWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMM-NLLA 917
A +FI+ MP KPDA+IW ++L +CR G +E AE SRR+ +L P + Y+++ N A
Sbjct: 665 AEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNP-DDPGYSILASNAYA 723
Query: 918 MSNRWEDVERLRHSMDEVGVKSVLVWSWIQIDQIVHVFSAEGAPHPATGEIYFELYHLVS 977
+W+ V +R S+ + + +SWI++ + VHVFS+ P + IY L L S
Sbjct: 724 ALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYS 783
Query: 978 EMKKLGYVPDTRCVYQDIDEEE-KGKVLLSHTEKLAIVYGLMKTKSRAPIRVIKNTRVCS 1036
M K GY+PD R V Q+++EEE K +++ H+E+LAI +GL+ T+ P++V+KN RVC
Sbjct: 784 LMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCG 843
Query: 1037 DCHTAAKYMSLVRGREIFLRDGARFHHFREGECSCNDCW 1075
DCH K +S + GREI +RD RFH F++G CSC D W
Sbjct: 844 DCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCKDRW 882
|
|
| TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1048 (374.0 bits), Expect = 6.5e-106, P = 6.5e-106
Identities = 249/870 (28%), Positives = 428/870 (49%)
Query: 210 VKSKHAQMIKMGKIWNSDDMVKSLIFHYLEFGDFTSAAKAFFLYFSRSYADWSSFLEDYE 269
V+ HA+++ G + +S + LI Y G A + F + ++ W + +
Sbjct: 206 VEQIHARILYQG-LRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLS 264
Query: 270 SFGGEVQELLEVWGELHGKGVIFRSRXXXXXXXXXXXXMAFWLGVEVHASLIKRGFDFDV 329
E E + ++ +++ G++ + +G ++H ++K GF D
Sbjct: 265 KNECEA-EAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDT 323
Query: 330 HLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQF 389
++ AL++ Y ++ SA +FS +S D + +N +I + E A++LF+ M
Sbjct: 324 YVCNALVSLYFHLGNLISAEHIFSNMSQ-RDAVTYNTLINGLSQCGYGEKAMELFKRMHL 382
Query: 390 SSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLEL 449
+ S T+ ++ AC+ G G+Q+H Y K SN + L+++Y++ +E
Sbjct: 383 DGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIET 442
Query: 450 ATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFT 509
A F + N+ WN M+ +Y L + ++ +F +M I P+ T+ +L
Sbjct: 443 ALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIR 502
Query: 510 HGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYV 569
G + + + F+ N SV++ +L L + IL D+
Sbjct: 503 LGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWD----ILIRFAGKDVVS 558
Query: 570 GTSLMDMYVKNDCLQNAQEVFDNMKNRNI----VAWNSLISGYCFKGLFVNAKKMLNQME 625
T+++ Y + + A F M +R I V + +S +++ Q
Sbjct: 559 WTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQAC 618
Query: 626 EEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYR 685
DL N+LV+ YS G+ +E+ + + +G + + W +L+SG Q+ N
Sbjct: 619 VSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTE-AG---DNIAWNALVSGFQQSGNNE 674
Query: 686 ESLKFFIQMQQEDIKPNSTTMSSXXXXXXXXXXXXXXKEIHCLCLKNGFIKDAYVATGLI 745
E+L+ F++M +E I N+ T S K++H + K G+ + V LI
Sbjct: 675 EALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALI 734
Query: 746 DMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAI 805
MY+K G++ A + F + + K SWN +I ++ +G G EA+ F +++ + +P+ +
Sbjct: 735 SMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHV 794
Query: 806 TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRT 865
T +L+AC + GLV++G YF+SM+++Y + P EHY C+VD+L +AG L A +FI+
Sbjct: 795 TLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQE 854
Query: 866 MPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDV 925
MP KPDA +W LL +C +H ++E E A+ L +LEP +SA Y L+ NL A+S +W+
Sbjct: 855 MPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDAR 914
Query: 926 ERLRHSMDEVGVKSVLVWSWIQIDQIVHVFSAEGAPHPATGEIYFELYHLVSEMKKLGYV 985
+ R M E GVK SWI++ +H F HP EI+ L ++GYV
Sbjct: 915 DLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYV 974
Query: 986 PDTRCVYQDIDEEEKGKVLLSHTEKLAIVYGLMKTKSRAPIRVIKNTRVCSDCHTAAKYM 1045
D + ++ E+K ++ H+EKLAI +GL+ + PI V+KN RVC+DCH K++
Sbjct: 975 QDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFV 1034
Query: 1046 SLVRGREIFLRDGARFHHFREGECSCNDCW 1075
S V REI +RD RFHHF G CSC D W
Sbjct: 1035 SKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064
|
|
| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1036 (369.7 bits), Expect = 1.2e-104, P = 1.2e-104
Identities = 252/768 (32%), Positives = 392/768 (51%)
Query: 316 VHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNE 375
+HA L+ +V + L+N Y +V A F + + D WN +I R
Sbjct: 73 LHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQN-RDVYAWNLMISGYGRAG 131
Query: 376 KWENAIKLFREMQFSSAKAIS-RTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVC 434
I+ F SS RT +L+AC V +G +IH LK ++ V
Sbjct: 132 NSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTV---IDGNKIHCLALKFGFMWDVYVA 188
Query: 435 NCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQ 494
LI +YSR + A +FD M ++ SWN+MIS Y G A +L N + +
Sbjct: 189 ASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM--- 245
Query: 495 PDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGR-E 553
D +T LLS G + +T+ S + S V + +L ++GR
Sbjct: 246 -DSVTVVSLLSACTEAGDFNRGVTI----HSYSIKHGLESELFVSNKLIDL-YAEFGRLR 299
Query: 554 SHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNI----VAWNSLISGYC 609
+ DL S++ Y N+ A +F M+ I + SL S
Sbjct: 300 DCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILS 359
Query: 610 FKGLFVNAKKMLN-QMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNV 668
G + + + + D+ N++V Y+ G A + + + N+ +V
Sbjct: 360 QLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNT----DV 415
Query: 669 VTWTSLISGSLQNENYRESLKFFIQMQQE-DIKPNSTTMSSXXXXXXXXXXXXXXKEIHC 727
++W ++ISG QN E+++ + M++E +I N T S ++H
Sbjct: 416 ISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHG 475
Query: 728 LCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKE 787
LKNG D +V T L DMY K G L+ A +F + WN +I +G+G++
Sbjct: 476 RLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEK 535
Query: 788 AILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMV 847
A++LF E+L+ G +PD ITF LL+AC +SGLV+EG F+ M TDY I P+++HY CMV
Sbjct: 536 AVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMV 595
Query: 848 DLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSA 907
D+ G+AG L+ A FI++M +PDA+IWGALL +CR+HG+++ +IAS LF++EP +
Sbjct: 596 DMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVG 655
Query: 908 NYNLMMNLLAMSNRWEDVERLRHSMDEVGVKSVLVWSWIQIDQIVHVFSAEGAPHPATGE 967
+ L+ N+ A + +WE V+ +R G++ WS +++D V VF HP E
Sbjct: 656 YHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEE 715
Query: 968 IYFELYHLVSEMKKLGYVPDTRCVYQDIDEEEKGKVLLSHTEKLAIVYGLMKTKSRAPIR 1027
+Y EL L +++K +GYVPD R V QD++++EK +L+SH+E+LAI + L+ T ++ IR
Sbjct: 716 MYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIR 775
Query: 1028 VIKNTRVCSDCHTAAKYMSLVRGREIFLRDGARFHHFREGECSCNDCW 1075
+ KN RVC DCH+ K++S + REI +RD RFHHF+ G CSC D W
Sbjct: 776 IFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
|
|
| TAIR|locus:2078653 AT3G02010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 861 (308.1 bits), Expect = 4.0e-104, Sum P(2) = 4.0e-104
Identities = 165/440 (37%), Positives = 263/440 (59%)
Query: 637 NSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQ 696
NSLV Y+ +EA +I + V+WT+LISG +Q + LK F +M+
Sbjct: 390 NSLVDMYAKCEMFEEAELIFKSLPQR----TTVSWTALISGYVQKGLHGAGLKLFTKMRG 445
Query: 697 EDIKPNSTTMSSXXXXXXXXXXXXXXKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKS 756
+++ + +T ++ K++H +++G +++ + +GL+DMY+K G++K
Sbjct: 446 SNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKD 505
Query: 757 AREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKN 816
A +VF + ++ SWN +I A G+G+ AI F +++E+G QPD+++ +L AC +
Sbjct: 506 AVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSH 565
Query: 817 SGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWG 876
G VE+G +YF +MS Y I P +HY+CM+DLLG+ G EA + MPF+PD +W
Sbjct: 566 CGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWS 625
Query: 877 ALLGSCRIHGHLEYAEIASRRLFKLEPC-NSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935
++L +CRIH + AE A+ +LF +E ++A Y M N+ A + WE V ++ +M E
Sbjct: 626 SVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRER 685
Query: 936 GVKSVLVWSWIQIDQIVHVFSAEGAPHPATGEIYFELYHLVSEMKKLGYVPDTRCVYQDI 995
G+K V +SW++++ +HVFS+ HP EI ++ L +E+++ GY PDT V QD+
Sbjct: 686 GIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDV 745
Query: 996 DEEEKGKVLLSHTEKLAIVYGLMKTKSRAPIRVIKNTRVCSDCHTAAKYMSLVRGREIFL 1055
DE+ K + L H+E+LA+ + L+ T PI V+KN R C DCH A K +S + REI +
Sbjct: 746 DEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITV 805
Query: 1056 RDGARFHHFREGECSCNDCW 1075
RD +RFHHF EG CSC D W
Sbjct: 806 RDTSRFHHFSEGVCSCGDYW 825
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SV26 | PP297_ARATH | No assigned EC number | 0.5877 | 0.7128 | 0.9986 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1076 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-153 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-136 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-60 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-43 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-41 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-25 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 3e-19 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 478 bits (1232), Expect = e-153
Identities = 257/810 (31%), Positives = 408/810 (50%), Gaps = 80/810 (9%)
Query: 300 ILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSDLE 359
+ +LC A G V + + V L A+++ + + ++ A +F ++ E
Sbjct: 92 LFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP--E 149
Query: 360 DDLL-WNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQI 418
DL WN ++ + ++ A+ L+ M ++ + T +L+ C + G+++
Sbjct: 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREV 209
Query: 419 HGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYV 478
H +V++ E ++ V N LI+MY + + A VFD M + SWN+MIS Y G
Sbjct: 210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGEC 269
Query: 479 DVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVV 538
LF M + PD++T +SV
Sbjct: 270 LEGLELFFTMRELSVDPDLMTI--------------------------------TSVISA 297
Query: 539 LQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNI 598
+ + + RL GRE HGY+++ G D+ V SL+ MY+ A++VF M+ ++
Sbjct: 298 CELLGDERL---GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA 354
Query: 599 VAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPD-------------------------- 632
V+W ++ISGY GL A + ME++ + PD
Sbjct: 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHEL 414
Query: 633 -----LVSW----NSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNEN 683
L+S+ N+L+ YS +AL + H++ +V++WTS+I+G N
Sbjct: 415 AERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNR 470
Query: 684 YRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATG 743
E+L FF QM +KPNS T+ + L C +G L GKEIH L+ G D ++
Sbjct: 471 CFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA 529
Query: 744 LIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD 803
L+D+Y + G + A F S K + SWN ++ G+ +G G A+ LF+ ++E+G PD
Sbjct: 530 LLDLYVRCGRMNYAWNQF-NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588
Query: 804 AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFI 863
+TF +LL AC SG+V +G +YF SM Y+I P ++HY+C+VDLLG+AG L EA++FI
Sbjct: 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFI 648
Query: 864 RTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWE 923
MP PD +WGALL +CRIH H+E E+A++ +F+L+P + Y L+ NL A + +W+
Sbjct: 649 NKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWD 708
Query: 924 DVERLRHSMDEVGVKSVLVWSWIQIDQIVHVFSAEGAPHPATGEIYFELYHLVSEMKKLG 983
+V R+R +M E G+ SW+++ VH F + HP EI L +MK G
Sbjct: 709 EVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASG 768
Query: 984 YVPDTRCVYQDIDEEEKGKVLLSHTEKLAIVYGLMKTKSRAPIRVIKNTRVCSDCHTAAK 1043
+ D E K + H+E+LAI +GL+ T PI V KN +C +CH K
Sbjct: 769 LAG-SESSSMDEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVK 827
Query: 1044 YMSLVRGREIFLRDGARFHHFREGECSCND 1073
++S + REI +RD +FHHF++GECSC D
Sbjct: 828 FISKIVRREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 426 bits (1097), Expect = e-136
Identities = 211/701 (30%), Positives = 350/701 (49%), Gaps = 106/701 (15%)
Query: 376 KWENAIKLFREMQFSSA-KAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVC 434
+ A++LF ++ + T +++AC + + K ++ +V S E + +
Sbjct: 102 RHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161
Query: 435 NCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQ 494
N ++ M+ + L A R+FD M + NL+SW ++I G VD
Sbjct: 162 NRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIG-----GLVDA-------------- 202
Query: 495 PDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRES 554
G+Y+ L R M G + V+L+A L + G++
Sbjct: 203 ----------------GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQL 246
Query: 555 HGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLF 614
H +L+ G+ D +V +L+DMY K +++A+ VFD M + VAWNS+++GY
Sbjct: 247 HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGY------ 300
Query: 615 VNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSL 674
++ G S+EAL + + M++SG+
Sbjct: 301 -----------------------------ALHGYSEEALCLYYEMRDSGV---------- 321
Query: 675 ISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGF 734
+ Q T S +++ L LL++ K+ H ++ GF
Sbjct: 322 ------------------SIDQ-------FTFSIMIRIFSRLALLEHAKQAHAGLIRTGF 356
Query: 735 IKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHE 794
D T L+D+YSK G ++ AR VF + K L SWN +I G+ +G G +A+ +F
Sbjct: 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFER 416
Query: 795 LLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAG 854
++ G P+ +TF A+L+AC+ SGL E+GW+ F SMS ++ I P HY+CM++LLG+ G
Sbjct: 417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476
Query: 855 YLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMN 914
LDEA+ IR PFKP +W ALL +CRIH +LE +A+ +L+ + P NY +++N
Sbjct: 477 LLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLN 536
Query: 915 LLAMSNRWEDVERLRHSMDEVGVKSVLVWSWIQIDQIVHVFSAEGAPHPATGEIYFELYH 974
L S R + ++ ++ G+ +WI++ + H F + HP + EIY +L
Sbjct: 537 LYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDE 596
Query: 975 LVSEMKKLGYVPDTRCVYQDIDEEEKGKVLLSHTEKLAIVYGLMKTKSRAPIRVIKNTRV 1034
L+ E+ + GYV + + D+DE+E+ H+EKLAI +GL+ T P+++ ++ R+
Sbjct: 597 LMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRI 656
Query: 1035 CSDCHTAAKYMSLVRGREIFLRDGARFHHFREGECSCNDCW 1075
C DCH K+++LV REI +RD +RFHHF+ G+CSC D W
Sbjct: 657 CKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 223 bits (569), Expect = 1e-60
Identities = 135/490 (27%), Positives = 223/490 (45%), Gaps = 85/490 (17%)
Query: 374 NEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSV 433
+ + E A+KL MQ V + + C A EG ++ L S + +
Sbjct: 64 HGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRL 123
Query: 434 CNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRI 493
N ++SM+ R +L A VF M + +L SWN ++ Y GY D A L+++M + +
Sbjct: 124 GNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183
Query: 494 QPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRE 553
+PD+ T+ C+L ++ G P+ L GRE
Sbjct: 184 RPDVYTFPCVL-------------------RTCGGIPD----------------LARGRE 208
Query: 554 SHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGY----- 608
H +++R G + D+ V +L+ MYVK + +A+ VFD M R+ ++WN++ISGY
Sbjct: 209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGE 268
Query: 609 CFKGLFVNAKKMLNQMEEEEIKPDLVS--------------------------------- 635
C +GL ++ M E + PDL++
Sbjct: 269 CLEGL-----ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDV 323
Query: 636 --WNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQ 693
NSL+ Y G EA + M+ + V+WT++ISG +N ++L+ +
Sbjct: 324 SVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYAL 379
Query: 694 MQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGN 753
M+Q+++ P+ T++S+L C LG L G ++H L + G I VA LI+MYSK
Sbjct: 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439
Query: 754 LKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAA 813
+ A EVF K + SW +I G + EA++ F ++L T +P+++T A L+A
Sbjct: 440 IDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSA 498
Query: 814 CKNSGLVEEG 823
C G + G
Sbjct: 499 CARIGALMCG 508
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 2e-43
Identities = 129/507 (25%), Positives = 224/507 (44%), Gaps = 56/507 (11%)
Query: 214 HAQMIKMGKIWNSD-DMVKSLIFHYLEFGDFTSAAKAFFLYFSRSYADWSSFLEDYESFG 272
HA +++ G + D D+V +LI Y++ GD SA F R W++ + Y
Sbjct: 210 HAHVVRFG--FELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFE-N 266
Query: 273 GEVQELLEVWGELHGKGVIFRSRILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLK 332
GE E LE++ + V +T ++ C L LG E+H ++K GF DV +
Sbjct: 267 GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC 326
Query: 333 CALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSA 392
+L+ Y A K+FS + + +D + W +I +N + A++ + M+ +
Sbjct: 327 NSLIQMYLSLGSWGEAEKVFSRM-ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNV 385
Query: 393 KAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATR 452
TI +L ACA +G G ++H + L S + V N LI MYS+ ++ A
Sbjct: 386 SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445
Query: 453 VFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGS 512
VF ++ + ++ SW S+I+ +
Sbjct: 446 VFHNIPEKDVISWTSIIAGL----------------------------------RLNNRC 471
Query: 513 YQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTS 572
++ L R M L +PN ++ L A + L G+E H ++LR G+ +D ++ +
Sbjct: 472 FE-ALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA 529
Query: 573 LMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPD 632
L+D+YV+ + A F N +++V+WN L++GY G A ++ N+M E + PD
Sbjct: 530 LLDLYVRCGRMNYAWNQF-NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588
Query: 633 LVSWNSLVSGYSIWGQSKEALVIIHHMK-NSGIYPNVVTWTSLI-----SGSLQNENYRE 686
V++ SL+ S G + L H M+ I PN+ + ++ +G L E
Sbjct: 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLT-----E 643
Query: 687 SLKFFIQMQQEDIKPNSTTMSSLLQTC 713
+ F +M I P+ +LL C
Sbjct: 644 AYNFINKMP---ITPDPAVWGALLNAC 667
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 163 bits (413), Expect = 2e-41
Identities = 119/447 (26%), Positives = 209/447 (46%), Gaps = 43/447 (9%)
Query: 316 VHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNE 375
V+ + GF+ D ++ ++ + KC + A +LF E+ + + W II +
Sbjct: 145 VYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE-RNLASWGTIIGGLVDAG 203
Query: 376 KWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCN 435
+ A LFREM + A RT V ML+A A +G+ G+Q+H VLK+ + + V
Sbjct: 204 NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC 263
Query: 436 CLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQP 495
LI MYS+ +E A VFD M + +WNSM++ Y GY + A L+ +M S +
Sbjct: 264 ALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323
Query: 496 DIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESH 555
D FT S++++ + L LL++ +++H
Sbjct: 324 D----------QFT-------------------------FSIMIRIFSRLALLEHAKQAH 348
Query: 556 GYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFV 615
++R G D+ T+L+D+Y K +++A+ VFD M +N+++WN+LI+GY G
Sbjct: 349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGT 408
Query: 616 NAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHM-KNSGIYPNVVTWTSL 674
A +M +M E + P+ V++ +++S G S++ I M +N I P + + +
Sbjct: 409 KAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468
Query: 675 ISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGF 734
I + E+ +++ KP ++LL C L+ G+ G
Sbjct: 469 IELLGREGLLDEAYAM---IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP 525
Query: 735 IK-DAYVATGLIDMYSKSGNLKSAREV 760
K + YV L+++Y+ SG A +V
Sbjct: 526 EKLNNYVV--LLNLYNSSGRQAEAAKV 550
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 5e-25
Identities = 64/272 (23%), Positives = 124/272 (45%), Gaps = 8/272 (2%)
Query: 237 YLEFGDFTSAAKAFFLYFSRSYADWSSFLEDYESFGGEVQEL---LEVWGELHGKGVIFR 293
+++ G A + F R+ A W + + G + E+W +
Sbjct: 168 HVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAE---- 223
Query: 294 SRILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFS 353
R ++L+ L + G ++H ++K G D + CAL++ Y KC D+E A +F
Sbjct: 224 PRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD 283
Query: 354 EVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFH 413
+ + + + WN ++ + E A+ L+ EM+ S T M++ +++
Sbjct: 284 GMPE-KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLE 342
Query: 414 EGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYT 473
KQ H ++++ ++ L+ +YS+ ++E A VFD M NL SWN++I+ Y
Sbjct: 343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402
Query: 474 GLGYVDVAWSLFNKMNSSRIQPDIITWNCLLS 505
G A +F +M + + P+ +T+ +LS
Sbjct: 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434
|
Length = 697 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 3e-19
Identities = 42/95 (44%), Positives = 58/95 (61%), Gaps = 13/95 (13%)
Query: 978 EMKKLGYVPDTRCVYQDIDEEE------KGKVLLSHTEKLAIVYGLMKTKSRAPIRVIKN 1031
+K G VP+T+ + D+D EE KGK+L SH EK A+ YGL+ T R+IK
Sbjct: 28 RIKVEGVVPETKEIGHDVDAEEFRDNGIKGKLLASHAEKQALAYGLLTT------RIIKV 81
Query: 1032 -TRVCSDCHTAAKYMSLVRGREIFLRDGARFHHFR 1065
R+C DCH +Y++ GREI +RD +RFHHF+
Sbjct: 82 LKRMCGDCHEFFRYIAKYTGREIIVRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 2e-12
Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 2/187 (1%)
Query: 232 SLIFHYLEFGDFTSAAKAFFLYFSRSYADWSSFLEDYESFGGEVQELLEVWGELHGKGVI 291
+LI Y + GD A F ++ W+S L Y + G +E L ++ E+ GV
Sbjct: 264 ALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGY-ALHGYSEEALCLYYEMRDSGVS 322
Query: 292 FRSRILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKL 351
+I++++ ++L + HA LI+ GF D+ AL++ Y K +E A +
Sbjct: 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV 382
Query: 352 FSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGA 411
F + ++ + WN +I + + A+++F M T + +L AC G
Sbjct: 383 F-DRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441
Query: 412 FHEGKQI 418
+G +I
Sbjct: 442 SEQGWEI 448
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.5 bits (148), Expect = 9e-12
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 597 NIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGY 643
++V +N+LI GYC KG A K+ N+M++ IKP++ +++ L+ G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 2e-11
Identities = 72/341 (21%), Positives = 137/341 (40%), Gaps = 64/341 (18%)
Query: 593 MKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEA 652
++N + +N L+S A ++L ++E +K D + +L+S + G+
Sbjct: 432 IRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAM 491
Query: 653 LVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQT 712
+ H M N+G+ NV T+ +LI G + ++ + M+ +++KP+ ++L+
Sbjct: 492 FEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551
Query: 713 CGGLGLLQN--------GKEIHCLCLKNGFIKDAYVATG-LIDMYSKSGNLKSAREVFRK 763
CG G + E H I ++ G L+ + +G + A+EV++
Sbjct: 552 CGQSGAVDRAFDVLAEMKAETHP-------IDPDHITVGALMKACANAGQVDRAKEVYQ- 603
Query: 764 SANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEG 823
MI + I G P+ +T + +C G +
Sbjct: 604 -----------MIHEYNIKGT-----------------PEV--YTIAVNSCSQKGDWDFA 633
Query: 824 WKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFI---RTMPFKPDATIWGALLG 880
+D M + P +S +VD+ G AG LD+A++ + R K + +L+G
Sbjct: 634 LSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692
Query: 881 SCRIHGHLE-----YAEIASRRLFKLEPCNSANYNLMMNLL 916
+C + + Y +I + KL P S MN L
Sbjct: 693 ACSNAKNWKKALELYEDI---KSIKLRPTVS-----TMNAL 725
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 4e-11
Identities = 22/47 (46%), Positives = 33/47 (70%)
Query: 631 PDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISG 677
PD+V++N+L+ GY G+ +EAL + + MK GI PNV T++ LI G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 1e-10
Identities = 72/356 (20%), Positives = 153/356 (42%), Gaps = 30/356 (8%)
Query: 378 ENAIKLFREMQFSSAKAISRTIVKMLQACAKVG-------AFHEGKQIHGYVLKSALESN 430
+ A+++ R +Q + KA + ++ CAK G FHE ++ + +E+N
Sbjct: 454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHE-------MVNAGVEAN 506
Query: 431 LSVCNCLISMYSRNNKLELATRVFDSMKDHNLSS----WNSMISSYTGLGYVDVAWSLFN 486
+ LI +R ++ A + M+ N+ +N++IS+ G VD A+ +
Sbjct: 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLA 566
Query: 487 KMNSSR--IQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTE 544
+M + I PD IT L+ G + + + + ++ + + ++
Sbjct: 567 EMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ 626
Query: 545 LRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNI----VA 600
+ + + + G+ D ++L+D+ L A E+ + + + I V+
Sbjct: 627 KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686
Query: 601 WNSLISGYCFKGLFVNAKKMLNQMEE---EEIKPDLVSWNSLVSGYSIWGQSKEALVIIH 657
++SL+ N KK L E+ +++P + + N+L++ Q +AL ++
Sbjct: 687 YSSLMGACSNAK---NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLS 743
Query: 658 HMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTC 713
MK G+ PN +T++ L+ S + ++ L Q +++ IKPN + C
Sbjct: 744 EMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 6e-09
Identities = 15/47 (31%), Positives = 29/47 (61%)
Query: 461 NLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGH 507
++ ++N++I Y G V+ A LFN+M I+P++ T++ L+ G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 6e-08
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 666 PNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTC 713
P+VVT+ +LI G + E+LK F +M++ IKPN T S L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 6e-08
Identities = 59/267 (22%), Positives = 109/267 (40%), Gaps = 11/267 (4%)
Query: 593 MKNRNI----VAWNSLISGYCFKGLFVNAKKMLNQMEEEE--IKPDLVSWNSLVSGYSIW 646
M+++N+ V +N+LIS G A +L +M+ E I PD ++ +L+ +
Sbjct: 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592
Query: 647 GQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTM 706
GQ A + + I +T ++ Q ++ +L + M+++ +KP+
Sbjct: 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652
Query: 707 SSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRK--- 763
S+L+ G G L EI K G + L+ S + N K A E++
Sbjct: 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712
Query: 764 -SANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEE 822
T+++ N +I +A+ + E+ G P+ IT++ LL A + +
Sbjct: 713 IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772
Query: 823 GWKYFDSMSTDYNIIPTIEHYSCMVDL 849
G D I P + C+ L
Sbjct: 773 GLDLLSQAKED-GIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 1e-06
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 771 SWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAAC 814
++N +I G+ G +EA+ LF+E+ + G +P+ T++ L+
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 1e-05
Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 23/174 (13%)
Query: 730 LKNGFIKDAYV------ATGLIDM--------YSKSGNLKSAREVFRKSA---NKTLASW 772
L++G IKD GL+DM + ++ +E FR + N TL+++
Sbjct: 381 LRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTF 440
Query: 773 NCMIMGFAIYGNGKEAILLFHELL-ETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMS 831
N M+M + L L+ E G + D +T L++ C SG V+ ++ F M
Sbjct: 441 N-MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499
Query: 832 TDYNIIPTIEHYSCMVDLLGKAGYLDE---AWDFIRTMPFKPDATIWGALLGSC 882
+ + + ++D +AG + + A+ +R+ KPD ++ AL+ +C
Sbjct: 500 NA-GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISAC 552
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 3e-05
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 571 TSLMDMYVKNDCLQNAQEVFDNMKNR----NIVAWNSLISGYC 609
+L+D Y K ++ A ++F+ MK R N+ ++ LI G C
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 6e-05
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 495 PDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQA 541
PD++T+N L+ G+ G + L L M+ G +PN + S+++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 1e-04
Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 430 NLSVCNCLISMYSRNNKLELATRVFDSMKDHNLS----SWNSMISSY 472
++ N LI Y + K+E A ++F+ MK + +++ +I
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 2e-04
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 634 VSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNV 668
V++N+L+ G G+ +EAL + MK GI P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 3e-04
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 599 VAWNSLISGYCFKGLFVNAKKMLNQMEEEEI 629
V +NSLISGYC G A ++ +M+E+ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 4e-04
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 802 PDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGK 852
PD +T+ L+ G VEE K F+ M I P + YS ++D L K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMK-KRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 4e-04
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 597 NIVAWNSLISGYCFKGLFVNAKKMLNQME 625
++V +N+LI G C G A ++L++ME
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 6e-04
Identities = 60/315 (19%), Positives = 129/315 (40%), Gaps = 22/315 (6%)
Query: 382 KLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMY 441
++F EM + +A T ++ CA+ G + +G + ++ + V N LIS
Sbjct: 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISAC 552
Query: 442 SRNNKLELATRVFDSMK--------DHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRI 493
++ ++ A V MK DH + +++ + G VD A ++ ++ I
Sbjct: 553 GQSGAVDRAFDVLAEMKAETHPIDPDH--ITVGALMKACANAGQVDRAKEVYQMIHEYNI 610
Query: 494 QPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRE 553
+ + ++ G + L++ M+ G +P+ S ++ L E
Sbjct: 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670
Query: 554 SHGYILRNGLDYDLYVGT----SLMDMYVKNDCLQNAQEVFDNMK----NRNIVAWNSLI 605
IL++ + +GT SLM + A E+++++K + N+LI
Sbjct: 671 ----ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALI 726
Query: 606 SGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIY 665
+ C A ++L++M+ + P+ ++++ L+ + L ++ K GI
Sbjct: 727 TALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIK 786
Query: 666 PNVVTWTSLISGSLQ 680
PN+V + L+
Sbjct: 787 PNLVMCRCITGLCLR 801
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 6e-04
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 464 SWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDI 497
++N++I G V+ A LF +M I+PD+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 599 VAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPD 632
V +N+LI G C G A ++ +M+E I+PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.002
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 771 SWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA 804
++N +I G G +EA+ LF E+ E G +PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.002
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 634 VSWNSLVSGYSIWGQSKEALVIIHHMKNSGI 664
V++NSL+SGY G+ +EAL + MK G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1076 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.82 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.79 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.77 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.77 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.76 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.75 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.74 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.71 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.7 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.68 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.68 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.66 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.66 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.65 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.61 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.6 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.56 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.55 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.51 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.47 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.47 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.46 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.34 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.32 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.31 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.27 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.26 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.23 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.22 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.21 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.2 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.18 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.18 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.17 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.14 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.13 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.13 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.12 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.12 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.11 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.1 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.09 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.08 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.08 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.05 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.0 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.96 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.95 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.93 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.92 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.92 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.92 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.91 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.9 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.89 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.83 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.83 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.81 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.79 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.79 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.77 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.76 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.75 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.74 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.74 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.73 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.69 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.67 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.67 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.67 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.66 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.65 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.63 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.62 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.61 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.6 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.55 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.53 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.51 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.45 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.43 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.41 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.4 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.36 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.3 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.29 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.29 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.25 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.22 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.19 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.17 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.15 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.15 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.12 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.09 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.08 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.06 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.98 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.98 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.91 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.91 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.88 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.88 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.85 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 97.83 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.82 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.82 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 97.82 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.78 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.75 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.72 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.72 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 97.68 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.68 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.68 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.66 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.65 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.64 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.61 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.6 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.57 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.57 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.52 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.52 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.5 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.43 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.43 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.4 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.35 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.33 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.32 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.3 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.25 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.23 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.18 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.16 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.1 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.09 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.09 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.08 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.02 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.01 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.0 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.0 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 96.95 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.88 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 96.87 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.86 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.79 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.77 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.76 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.76 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.71 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.65 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.64 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.64 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.64 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.61 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.59 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.55 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.55 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.55 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.53 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.52 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.51 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.5 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.5 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.48 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.47 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 96.43 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.4 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.4 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.32 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.18 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.1 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.06 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.02 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.0 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.0 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 95.99 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 95.96 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.96 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.79 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 95.71 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.58 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.55 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.54 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 95.51 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.51 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 95.44 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.4 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.3 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.25 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.09 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.03 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 95.01 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 94.91 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 94.91 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 94.89 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.84 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 94.65 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.31 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.31 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 94.25 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.18 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 94.12 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.74 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 93.63 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 93.6 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.22 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 93.13 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.09 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.97 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 92.86 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 92.76 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.7 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.61 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.55 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 92.21 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 92.16 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 91.87 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 91.84 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 91.8 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 91.77 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 91.75 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 91.71 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 91.52 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.32 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.04 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 90.69 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 90.45 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.39 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.13 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 90.06 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 89.99 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 89.92 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.83 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 89.61 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 89.54 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 89.14 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 88.82 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 88.81 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 88.73 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.6 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 88.09 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.06 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 88.02 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 87.86 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 87.54 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 87.43 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 86.9 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 86.27 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 86.1 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 86.05 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 85.92 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 85.88 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 85.81 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 85.51 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 85.11 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 84.98 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 83.9 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 83.68 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 83.07 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 82.76 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 82.61 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 82.57 | |
| PRK09687 | 280 | putative lyase; Provisional | 82.44 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 82.07 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 82.0 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 81.66 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 81.65 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 81.56 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-145 Score=1390.30 Aligned_cols=807 Identities=31% Similarity=0.530 Sum_probs=792.5
Q ss_pred CCCCcccHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChHHHH
Q 038364 254 FSRSYADWSSFLEDYESFGGEVQELLEVWGELHGKGVIFRSRILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKC 333 (1076)
Q Consensus 254 ~~~~~~~wn~li~~~~~~g~~~~~al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~ 333 (1076)
+.++..++|++|.+|++.|.+ ++|+.+|.+|.+.|+.|+..||..++++|.+.+.++.|.++|+.+++.|..+++.++|
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~-~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQL-EQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred cccchhhHHHHHHHHHhCCCH-HHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 456778899999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcH
Q 038364 334 ALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFH 413 (1076)
Q Consensus 334 ~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~ 413 (1076)
+|+++|+++|+++.|+++|++|++ ||+++||+||.+|++.|++++|+++|++|...|+.||.+||++++++|+..+++.
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~-~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPE-RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCC-CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 038364 414 EGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRI 493 (1076)
Q Consensus 414 ~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~ 493 (1076)
.|.++|..+++.|+.||..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~ 284 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHH
Q 038364 494 QPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSL 573 (1076)
Q Consensus 494 ~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aL 573 (1076)
.||..||+.+|.++++.|+.+.|.+++..|.+.|+.||..+|++++.+|++.|+++.|.++++.|. .+|..+||++
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~l 360 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAM 360 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999985 5789999999
Q ss_pred HHHHHhCCCHHHHHHHHhhcCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCCh
Q 038364 574 MDMYVKNDCLQNAQEVFDNMKN----RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQS 649 (1076)
Q Consensus 574 i~~y~k~g~~~~A~~lf~~m~~----~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~ 649 (1076)
|.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|+.++|.++++.|.+.|+.||..+||+||++|+++|++
T Consensus 361 i~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 440 (857)
T PLN03077 361 ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCH
Confidence 9999999999999999999964 899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHH
Q 038364 650 KEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLC 729 (1076)
Q Consensus 650 ~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~ 729 (1076)
++|.++|++|.+ +|.++||+||.+|+++|+.++|+++|++|.. +++||..||+++|.+|++.|+++.++++|..+
T Consensus 441 ~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~ 515 (857)
T PLN03077 441 DKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHV 515 (857)
T ss_pred HHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH
Confidence 999999999974 6899999999999999999999999999986 69999999999999999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 038364 730 LKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTA 809 (1076)
Q Consensus 730 ~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ 809 (1076)
.+.|+.+|..++|+|+++|+|+|++++|.++|+++ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||++
T Consensus 516 ~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 594 (857)
T PLN03077 516 LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594 (857)
T ss_pred HHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCch
Q 038364 810 LLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLE 889 (1076)
Q Consensus 810 ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e 889 (1076)
+|++|++.|++++|.++|++|.+++|+.|+..||++|+++|+|+|+++||++++++|+++||..+|++|+++|+.||+.+
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e 674 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVE 674 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChH
Confidence 99999999999999999999997889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCCCccCcceEEEEECCEEEEEEeCCCCCcCcHHHH
Q 038364 890 YAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVGVKSVLVWSWIQIDQIVHVFSAEGAPHPATGEIY 969 (1076)
Q Consensus 890 ~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~~~~~~i~ 969 (1076)
.|+.+++++++++|+++.+|+.|+++|++.|+|++|.++++.|+++|++|+||+|||++++++|.|.++|.+||+.++||
T Consensus 675 ~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~ 754 (857)
T PLN03077 675 LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEIN 754 (857)
T ss_pred HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCcccCCCccccccchhhhhhhhhhccHHHHHHHHhccCCCCCcEEEEeccccCchhHHHHHHHHhhc
Q 038364 970 FELYHLVSEMKKLGYVPDTRCVYQDIDEEEKGKVLLSHTEKLAIVYGLMKTKSRAPIRVIKNTRVCSDCHTAAKYMSLVR 1049 (1076)
Q Consensus 970 ~~l~~l~~~m~~~G~~pd~~~~~~~~~~~~k~~~~~~hse~la~a~gl~~~~~~~~i~v~knlr~c~dch~~~k~~s~~~ 1049 (1076)
..|++|..+|++.||+||+++++ |++|++|++.+++||||||||||||+||+|+||||+||||||+|||+++||||||+
T Consensus 755 ~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~ 833 (857)
T PLN03077 755 TVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIV 833 (857)
T ss_pred HHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHh
Confidence 99999999999999999999988 55889999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEecCCccccccCCcccCCC
Q 038364 1050 GREIFLRDGARFHHFREGECSCND 1073 (1076)
Q Consensus 1050 ~r~i~vrd~~rfh~f~~g~csc~d 1073 (1076)
||||||||++|||||+||+|||||
T Consensus 834 ~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 834 RREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred CeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-121 Score=1142.53 Aligned_cols=612 Identities=33% Similarity=0.620 Sum_probs=576.1
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHH
Q 038364 359 EDDLLWNEIIMVKLRNEKWENAIKLFREMQFSS-AKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCL 437 (1076)
Q Consensus 359 ~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~L 437 (1076)
++.++|+++|.+|++.|++++|+++|+.|...+ +.||..||++++.+|++.++++.|.++|..+.+.|+.||..++|.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 688899999999999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHH
Q 038364 438 ISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVL 517 (1076)
Q Consensus 438 i~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al 517 (1076)
|++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~----------------------- 221 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSD----------------------- 221 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-----------------------
Confidence 999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCC
Q 038364 518 TLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRN 597 (1076)
Q Consensus 518 ~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d 597 (1076)
||..||+.++.+|++.|..+.|+++|..+.+.|+.+|..++|+||++|+|+|++++|.++|++|.++|
T Consensus 222 ------------p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~ 289 (697)
T PLN03081 222 ------------AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT 289 (697)
T ss_pred ------------CChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCC
Confidence 88889999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHH
Q 038364 598 IVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISG 677 (1076)
Q Consensus 598 ~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~ 677 (1076)
+++||+||.+|++.|+.++|+++|++|.+.|+.|
T Consensus 290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p---------------------------------------------- 323 (697)
T PLN03081 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI---------------------------------------------- 323 (697)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----------------------------------------------
Confidence 7777777777777777776666666666555444
Q ss_pred HhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHH
Q 038364 678 SLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSA 757 (1076)
Q Consensus 678 ~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A 757 (1076)
|..||++++.+|++.|++++|+++|..+.+.|+.+|..++++|+++|+++|++++|
T Consensus 324 ------------------------d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A 379 (697)
T PLN03081 324 ------------------------DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379 (697)
T ss_pred ------------------------CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHH
Confidence 44444444445555555555555555566667788888999999999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 038364 758 REVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNII 837 (1076)
Q Consensus 758 ~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~ 837 (1076)
.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+++|++|++.|++++|.++|+.|.+++|+.
T Consensus 380 ~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~ 459 (697)
T PLN03081 380 RNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK 459 (697)
T ss_pred HHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 838 PTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 838 p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
|+..+|++||++|+++|++++|.+++++|++.|+..+|++|+.+|+.+|+++.|+.+++++++++|++..+|+.|+++|+
T Consensus 460 p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~ 539 (697)
T PLN03081 460 PRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYN 539 (697)
T ss_pred CCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhCCCccCcceEEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHHCCcccCCCccccccch
Q 038364 918 MSNRWEDVERLRHSMDEVGVKSVLVWSWIQIDQIVHVFSAEGAPHPATGEIYFELYHLVSEMKKLGYVPDTRCVYQDIDE 997 (1076)
Q Consensus 918 ~~G~~~eA~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~G~~pd~~~~~~~~~~ 997 (1076)
+.|+|++|.+++++|+++|++|.||+|||++++++|.|.++|.+||+..+||.++.++..+|++.||+||+.+++||+++
T Consensus 540 ~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~ 619 (697)
T PLN03081 540 SSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDE 619 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhccHHHHHHHHhccCCCCCcEEEEeccccCchhHHHHHHHHhhcCceEEEecCCccccccCCcccCCCCC
Q 038364 998 EEKGKVLLSHTEKLAIVYGLMKTKSRAPIRVIKNTRVCSDCHTAAKYMSLVRGREIFLRDGARFHHFREGECSCNDCW 1075 (1076)
Q Consensus 998 ~~k~~~~~~hse~la~a~gl~~~~~~~~i~v~knlr~c~dch~~~k~~s~~~~r~i~vrd~~rfh~f~~g~csc~d~w 1075 (1076)
++|++.+++||||||||||||++|+|+||||+||||||+|||+++|||||++||||||||++|||||+||+|||||||
T Consensus 620 ~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 620 DEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred HHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-86 Score=846.63 Aligned_cols=621 Identities=25% Similarity=0.361 Sum_probs=460.5
Q ss_pred hhHHhhhccCCchhHHHHHHHHHHhCCCCCCchhhhHHHHHHHccCChhhHHHHhhhcCCCCcccHHHHHHHHHhCCCCh
Q 038364 196 CFLNETNKFRCLSSVKSKHAQMIKMGKIWNSDDMVKSLIFHYLEFGDFTSAAKAFFLYFSRSYADWSSFLEDYESFGGEV 275 (1076)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~h~~~~~~g~~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~wn~li~~~~~~g~~~ 275 (1076)
.+++.|.+.+.+..|.++|+++++.|.. ++++++|.|+++|+++|++++|+++|++|++||+++||++|.+|++.|.+
T Consensus 91 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~- 168 (857)
T PLN03077 91 ALFRLCEWKRAVEEGSRVCSRALSSHPS-LGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYF- 168 (857)
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHcCCC-CCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCH-
Confidence 4667888999999999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhc
Q 038364 276 QELLEVWGELHGKGVIFRSRILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEV 355 (1076)
Q Consensus 276 ~~al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m 355 (1076)
++|+++|.+|...|+.||.+||+.+|++|++.+++..|+++|+.+++.|+.+|++++|+||++|+++|++++|+++|++|
T Consensus 169 ~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m 248 (857)
T PLN03077 169 DEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM 248 (857)
T ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHH
Q 038364 356 SDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCN 435 (1076)
Q Consensus 356 ~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n 435 (1076)
++ +|+++||+||.+|+++|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|+++|..+.+.|+.||..+||
T Consensus 249 ~~-~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n 327 (857)
T PLN03077 249 PR-RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN 327 (857)
T ss_pred CC-CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHH
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhh
Q 038364 436 CLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQN 515 (1076)
Q Consensus 436 ~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~ 515 (1076)
+||++|+++|++++|.++|++|..||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|
T Consensus 328 ~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll----------- 396 (857)
T PLN03077 328 SLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL----------- 396 (857)
T ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHH-----------
Confidence 999999999999999999999999999999999999999999999999999999999985555555544
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC
Q 038364 516 VLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN 595 (1076)
Q Consensus 516 Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~ 595 (1076)
.+|++.|+++.|.++|+.+.+.|+.++..++|+||++|+|+|++++|.++|++|.+
T Consensus 397 ------------------------~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 397 ------------------------SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred ------------------------HHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence 45555555555555555555555555555555555555555555555555555555
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHH
Q 038364 596 RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLI 675 (1076)
Q Consensus 596 ~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI 675 (1076)
+|+++||+||.+|+++|+.++|+++|++|.. +++||.+||+++|.+|++.|+++.+.+++..|.+.|+.+|..++|+||
T Consensus 453 ~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi 531 (857)
T PLN03077 453 KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALL 531 (857)
T ss_pred CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHH
Confidence 5555555555555555555555555555543 345555555555555555555555555555555555555555555555
Q ss_pred HHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHH
Q 038364 676 SGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLK 755 (1076)
Q Consensus 676 ~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~ 755 (1076)
++|++.|++++|.++|++| .||..+|++++.+|++.|+.++|.+++++|.+.|+.||..+|++++.+|++.|+++
T Consensus 532 ~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ 606 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVT 606 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHH
Confidence 5555555555555555544 34555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhcC-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 038364 756 SAREVFRKSA-----NKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSM 830 (1076)
Q Consensus 756 ~A~~vf~~m~-----~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m 830 (1076)
+|.++|+.|. .|+..+|+.|+.+|++.|+.++|.+++++|. ++||..+|.+|+.+|...|+++.|+...+.+
T Consensus 607 ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHI 683 (857)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 5555555554 2444555555555555555555555555542 4555555555555555555555555444444
Q ss_pred hhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC
Q 038364 831 STDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM 866 (1076)
Q Consensus 831 ~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m 866 (1076)
.+ +.|+ ...|..|.++|++.|++++|.++.+.|
T Consensus 684 ~~---l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 684 FE---LDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717 (857)
T ss_pred Hh---hCCCCcchHHHHHHHHHHCCChHHHHHHHHHH
Confidence 32 2333 334444455555555555555555554
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-71 Score=688.20 Aligned_cols=510 Identities=25% Similarity=0.396 Sum_probs=474.3
Q ss_pred CCCCcccHHHHHHHHHhCCCChHHHHHHHHHHHhCC-CCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChHHH
Q 038364 254 FSRSYADWSSFLEDYESFGGEVQELLEVWGELHGKG-VIFRSRILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLK 332 (1076)
Q Consensus 254 ~~~~~~~wn~li~~~~~~g~~~~~al~lf~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~d~~~~ 332 (1076)
..++.++||++|.+|.+.|++ ++|+++|+.|...+ +.||.+||+.++++|++.++++.|.++|..+.+.|+.||++++
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~-~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~ 161 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRH-REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCH-HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHH
Confidence 356778999999999999999 99999999999865 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCc
Q 038364 333 CALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAF 412 (1076)
Q Consensus 333 ~~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~ 412 (1076)
|+|+++|+++|++++|+++|++|++ ||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.
T Consensus 162 n~Li~~y~k~g~~~~A~~lf~~m~~-~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 162 NRVLLMHVKCGMLIDARRLFDEMPE-RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHHHHhcCCCHHHHHHHHhcCCC-CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 038364 413 HEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSR 492 (1076)
Q Consensus 413 ~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g 492 (1076)
+.|+++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|+.++|+++|++|.+.|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHH
Q 038364 493 IQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTS 572 (1076)
Q Consensus 493 ~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~a 572 (1076)
+. ||..||++++.+|++.|++++|+++|+.+.+.|+.+|..++|+
T Consensus 321 ~~-----------------------------------pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~ 365 (697)
T PLN03081 321 VS-----------------------------------IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTA 365 (697)
T ss_pred CC-----------------------------------CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHH
Confidence 88 7777777777888888888888888888888888899999999
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHH
Q 038364 573 LMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEA 652 (1076)
Q Consensus 573 Li~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A 652 (1076)
||++|+|+|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+++|++|++.|++++|
T Consensus 366 Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a 445 (697)
T PLN03081 366 LVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHh-cCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHH
Q 038364 653 LVIIHHMKN-SGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLK 731 (1076)
Q Consensus 653 ~~lf~~m~~-~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~ 731 (1076)
.++|+.|.+ .|+.|+..+|++||++|++.|++++|.+++++| ++.||..+|++++.+|...|+++.|+.+++.+.+
T Consensus 446 ~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 446 WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG 522 (697)
T ss_pred HHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 999999986 799999999999999999999999999999988 5899999999999999999999999999999875
Q ss_pred cCCCC-ChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCCh-----HHHH-------HHHHHHHHcCCHHH----HHHHHHH
Q 038364 732 NGFIK-DAYVATGLIDMYSKSGNLKSAREVFRKSANKTL-----ASWN-------CMIMGFAIYGNGKE----AILLFHE 794 (1076)
Q Consensus 732 ~g~~~-d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~-----~s~n-------~li~~~~~~g~~~~----Al~l~~~ 794 (1076)
+.| +..+|+.|+++|++.|++++|.++++.|.++++ .+|. .++.+...|.+.++ ..++..+
T Consensus 523 --~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~ 600 (697)
T PLN03081 523 --MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKE 600 (697)
T ss_pred --CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHH
Confidence 555 467999999999999999999999999987654 3553 23444444554433 4567778
Q ss_pred HHHCCCCCCHH
Q 038364 795 LLETGFQPDAI 805 (1076)
Q Consensus 795 M~~~g~~Pd~~ 805 (1076)
|.+.|..||..
T Consensus 601 ~~~~gy~~~~~ 611 (697)
T PLN03081 601 ISEYGYVAEEN 611 (697)
T ss_pred HHHcCCCCCcc
Confidence 88888888864
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-68 Score=663.89 Aligned_cols=528 Identities=17% Similarity=0.236 Sum_probs=488.3
Q ss_pred CCChHHHHHHHHHHhcCCChHHHHHHHhhcCCCCChhhH-----HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 038364 326 DFDVHLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLW-----NEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIV 400 (1076)
Q Consensus 326 ~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~-----n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~ 400 (1076)
.++...+..+++.|+++|++++|.++|++|+. ++.+.| +.++.+|.+.|..++|+++|+.|.. ||..||+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~-~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEK-RGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 46778899999999999999999999999998 766554 5567779999999999999999973 9999999
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcC----CCChhHHHHHHHHHHhCC
Q 038364 401 KMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMK----DHNLSSWNSMISSYTGLG 476 (1076)
Q Consensus 401 ~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~lI~~~~~~g 476 (1076)
.+|.+|++.|+++.|.++|+.|.+.|+.||..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999999999999999999999999996 589999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHh--cCCCCCcccHHHHHHHHHhcCchHHHHHH
Q 038364 477 YVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQS--LGFRPNGSSVSVVLQAVTELRLLKYGRES 554 (1076)
Q Consensus 477 ~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~--~gi~pd~~t~~~ll~a~~~~g~~~~a~~i 554 (1076)
++++|+++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||.+||+++|.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 67899999999999999999999999999
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038364 555 HGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN----RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIK 630 (1076)
Q Consensus 555 ~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~----~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~ 630 (1076)
++.|.+.|+.|+..+||++|++|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999985 79999999999999999999999999999999999
Q ss_pred CCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHH
Q 038364 631 PDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLL 710 (1076)
Q Consensus 631 pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL 710 (1076)
||..+|++||.+|+++|++++|.++|++|.+.|+.||.++||+||.+|++.|++++|+++|++|.+.|+.||..||++++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHH----hhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHH
Q 038364 711 QTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMY----SKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGK 786 (1076)
Q Consensus 711 ~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y----~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~ 786 (1076)
.+|++.|+++.|.++|..|.+.|+.||..+|++|++++ .++++..++...|+.+...+...|+ +
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~------------~ 829 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT------------S 829 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH------------H
Confidence 99999999999999999999999999999999999874 4455555555555544444444554 4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC
Q 038364 787 EAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM 866 (1076)
Q Consensus 787 ~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m 866 (1076)
+|+.+|++|.+.|+.||.+||+.+|.+++..+..+.+..+++.|... +..|+..+|+++|+++++. .++|..++++|
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em 906 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEA 906 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHH
Confidence 69999999999999999999999998777888888888888887654 6778888999999998542 47899999998
Q ss_pred ---CCCCCHH
Q 038364 867 ---PFKPDAT 873 (1076)
Q Consensus 867 ---~~~pd~~ 873 (1076)
++.|+..
T Consensus 907 ~~~Gi~p~~~ 916 (1060)
T PLN03218 907 ASLGVVPSVS 916 (1060)
T ss_pred HHcCCCCCcc
Confidence 5667654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-65 Score=639.37 Aligned_cols=522 Identities=15% Similarity=0.150 Sum_probs=437.8
Q ss_pred CCchhhhHHHHHHHccCChhhHHHHhhhcCCCCcccHHH-----HHHHHHhCCCChHHHHHHHHHHHhCCCCCCcchHHH
Q 038364 225 NSDDMVKSLIFHYLEFGDFTSAAKAFFLYFSRSYADWSS-----FLEDYESFGGEVQELLEVWGELHGKGVIFRSRILTI 299 (1076)
Q Consensus 225 ~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~wn~-----li~~~~~~g~~~~~al~lf~~m~~~g~~p~~~t~~~ 299 (1076)
.+...+..+++.|+++|++++|+++|+.|+.++++.|+. ++.+|.+.|.. ++|+.+|+.|.. ||.+||+.
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~-~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAV-KEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCH-HHHHHHHHHcCC----CCHHHHHH
Confidence 566778889999999999999999999999888777654 55668888988 999999999975 99999999
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhcCC---CCChhhHHHHHHHHHhCCC
Q 038364 300 ILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSD---LEDDLLWNEIIMVKLRNEK 376 (1076)
Q Consensus 300 ll~a~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~---~~d~~s~n~li~~~~~~g~ 376 (1076)
+|++|++.|+++.|.++|+.|.+.|+.||.++||+||++|+++|++++|.++|++|.+ .+|+++||+||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 9999999999999999999999999999999999999999999999999999999984 2799999999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 038364 377 WENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLK--SALESNLSVCNCLISMYSRNNKLELATRVF 454 (1076)
Q Consensus 377 ~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~--~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf 454 (1076)
+++|+++|++|...|+.||..||+++|.+|++.|++++|.++|+.|.+ .|+.||..+|++||++|+++|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999986 578899999999999999999988888888
Q ss_pred HhcCC----CChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 038364 455 DSMKD----HNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRP 530 (1076)
Q Consensus 455 ~~m~~----~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~p 530 (1076)
++|.+ ++.++||++|.+|++.|++++|+++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 88854 45678888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC----CCHhHHHHHHH
Q 038364 531 NGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN----RNIVAWNSLIS 606 (1076)
Q Consensus 531 d~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~----~d~~~~n~lI~ 606 (1076)
|..+|+++|.+|++.|++++|.++|..|.+.|+.||..+||+||++|++.|++++|.++|++|.. ||..+|+++|.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888887753 77788888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHh--cCCCCchHHHHHHHHHHhcCCCh
Q 038364 607 GYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKN--SGIYPNVVTWTSLISGSLQNENY 684 (1076)
Q Consensus 607 ~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~--~gi~pd~~ty~~LI~~~~~~g~~ 684 (1076)
+|++.|+.++|.++|.+|.+.|+.||..+|++|+.+|.+ ++++|.++.+.+.. .+...+. .+..
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~g~~~~~------------n~w~ 828 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDSGRPQIE------------NKWT 828 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhccccccc------------cchH
Confidence 888888888888888888888888888888887765432 34444444333321 1111111 2234
Q ss_pred hHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhc
Q 038364 685 RESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKS 764 (1076)
Q Consensus 685 ~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 764 (1076)
++|+.+|++|.+.|+.||..||+.+|.+++..+..+.+..+++.+...+..++..+|++||+++++. .++|..+|++|
T Consensus 829 ~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em 906 (1060)
T PLN03218 829 SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEA 906 (1060)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHH
Confidence 5689999999999999999999999977777788888888888777777888888999999987432 46799999888
Q ss_pred CCC
Q 038364 765 ANK 767 (1076)
Q Consensus 765 ~~~ 767 (1076)
...
T Consensus 907 ~~~ 909 (1060)
T PLN03218 907 ASL 909 (1060)
T ss_pred HHc
Confidence 764
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=379.56 Aligned_cols=715 Identities=13% Similarity=0.031 Sum_probs=541.6
Q ss_pred ccCCchhHHHHHHHHHHhCCCCCCchhhhHHHHHHHccCChhhHHHHhhhc---CCCCcccHHHHHHHHHhCCCChHHHH
Q 038364 203 KFRCLSSVKSKHAQMIKMGKIWNSDDMVKSLIFHYLEFGDFTSAAKAFFLY---FSRSYADWSSFLEDYESFGGEVQELL 279 (1076)
Q Consensus 203 ~~~~~~~~~~~h~~~~~~g~~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~---~~~~~~~wn~li~~~~~~g~~~~~al 279 (1076)
..+.+..+......++...- .+......+...+...|++++|.++++.+ ..++...|..+...+...|++ ++|+
T Consensus 137 ~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~A~ 213 (899)
T TIGR02917 137 GLGQLELAQKSYEQALAIDP--RSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNI-ELAL 213 (899)
T ss_pred HcCCHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCH-HHHH
Confidence 44566666666666654432 33445556666677777777777777665 233445666666667777777 7777
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhcCCC-
Q 038364 280 EVWGELHGKGVIFRSRILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSDL- 358 (1076)
Q Consensus 280 ~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~~- 358 (1076)
..|.+..+... .+..++..+...+...|+++.|.+.+..+.+.... +..........+...|++++|...|++....
T Consensus 214 ~~~~~a~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 291 (899)
T TIGR02917 214 AAYRKAIALRP-NNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSA 291 (899)
T ss_pred HHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 77777665432 23445555666666777777777777776665432 2223333333455667777777777665430
Q ss_pred C-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHH
Q 038364 359 E-DDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCL 437 (1076)
Q Consensus 359 ~-d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~L 437 (1076)
+ +...+..+...+.+.|++++|...|+++.... +.+...+..+...+...|+++.|.+.+..+++... .+..+++.+
T Consensus 292 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l 369 (899)
T TIGR02917 292 PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLL 369 (899)
T ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHH
Confidence 1 22334444555667777778877777776543 23445556666677777888888888777776542 356677777
Q ss_pred HHHHHhCCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 038364 438 ISMYSRNNKLELATRVFDSMKD---HNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQ 514 (1076)
Q Consensus 438 i~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~ 514 (1076)
...|.+.|++++|.+.|+++.+ .+...|..+...+...|++++|.+.|+++.+.... +...+..++..+.+.|+++
T Consensus 370 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 448 (899)
T TIGR02917 370 GEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFD 448 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHH
Confidence 8888888888888888877643 34556777777788888888888888887766544 3455666777888888888
Q ss_pred hHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC
Q 038364 515 NVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMK 594 (1076)
Q Consensus 515 ~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~ 594 (1076)
+|+++++++.... .++..++..+...+...|++++|.+.+..+.+... .+...+..+..+|.+.|++++|.+.|+++.
T Consensus 449 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 526 (899)
T TIGR02917 449 KALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVL 526 (899)
T ss_pred HHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8888888887653 23556777888888899999999999998887653 345667778889999999999999998876
Q ss_pred C---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHH
Q 038364 595 N---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTW 671 (1076)
Q Consensus 595 ~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty 671 (1076)
. .+..++..+...+.+.|+.++|...|+++.+.+ ..+...+..+...|.+.|++++|..+++.+.+. ...+...|
T Consensus 527 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~ 604 (899)
T TIGR02917 527 TIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAW 604 (899)
T ss_pred HhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHH
Confidence 4 467788889999999999999999999987764 335567778889999999999999999998764 24567889
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhc
Q 038364 672 TSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKS 751 (1076)
Q Consensus 672 ~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~ 751 (1076)
..+...|.+.|++++|.+.|+++.+.. +.+...+..+..++...|++++|..++..+.+. .+.+...+..++..+.+.
T Consensus 605 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 682 (899)
T TIGR02917 605 LMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAA 682 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999997642 335567788888888999999999999998874 234577888999999999
Q ss_pred CCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038364 752 GNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFD 828 (1076)
Q Consensus 752 G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~ 828 (1076)
|++++|.++++.+.+ .+...|..+...+...|++++|++.|+++... .|+..++..+..++.+.|++++|.+.++
T Consensus 683 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 760 (899)
T TIGR02917 683 KRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLE 760 (899)
T ss_pred CCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999998875 35567888899999999999999999999984 5666777888889999999999999999
Q ss_pred HhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCc
Q 038364 829 SMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM--PFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 829 ~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m--~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~ 906 (1076)
.+.+. .+.+...+..+...|.+.|+.++|.+.|+++ ..+++..+++.+...+...|+ ++|+..+++++++.|+++
T Consensus 761 ~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~ 837 (899)
T TIGR02917 761 AWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIP 837 (899)
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCc
Confidence 98864 3445778889999999999999999999987 244567789999999999999 889999999999999999
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 907 ANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 907 ~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
..+..++.+|...|++++|.+.++++.+.+
T Consensus 838 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 838 AILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999997755
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=378.02 Aligned_cols=716 Identities=13% Similarity=0.028 Sum_probs=600.7
Q ss_pred HhhhccCCchhHHHHHHHHHHhCCCCCCchhhhHHHHHHHccCChhhHHHHhhhc---CCCCcccHHHHHHHHHhCCCCh
Q 038364 199 NETNKFRCLSSVKSKHAQMIKMGKIWNSDDMVKSLIFHYLEFGDFTSAAKAFFLY---FSRSYADWSSFLEDYESFGGEV 275 (1076)
Q Consensus 199 ~~~~~~~~~~~~~~~h~~~~~~g~~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~---~~~~~~~wn~li~~~~~~g~~~ 275 (1076)
......+++..+..+...+++... .+......+...|.+.|++++|...|+.. ...+...|..++..+...|++
T Consensus 167 ~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~- 243 (899)
T TIGR02917 167 QLALAENRFDEARALIDEVLTADP--GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEF- 243 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-
Confidence 334566788888888888776542 45566777788899999999999999976 345667888999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhc
Q 038364 276 QELLEVWGELHGKGVIFRSRILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEV 355 (1076)
Q Consensus 276 ~~al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m 355 (1076)
++|...+.++.+.... +..............|+++.|...+..+++.+.. +......+...|.+.|++++|...|+..
T Consensus 244 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 321 (899)
T TIGR02917 244 EEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQI 321 (899)
T ss_pred HHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999876432 2223323333445678999999999999887633 2233444556788899999999999876
Q ss_pred CC--CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHH
Q 038364 356 SD--LEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSV 433 (1076)
Q Consensus 356 ~~--~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v 433 (1076)
.. ..+...+..+...+.+.|++++|+..++++.... +.+...+..+...+...|++++|.+.+..+.+... .+...
T Consensus 322 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~ 399 (899)
T TIGR02917 322 LKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAA 399 (899)
T ss_pred HHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHH
Confidence 43 1356778888999999999999999999998654 45677888889999999999999999999987653 35677
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 038364 434 CNCLISMYSRNNKLELATRVFDSMKDH---NLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTH 510 (1076)
Q Consensus 434 ~n~Li~~y~k~g~~~~A~~lf~~m~~~---d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~ 510 (1076)
+..+...|...|+.++|.+.|+.+... +...+..++..|.+.|++++|.++++++..... ++..+|+.+...+...
T Consensus 400 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 478 (899)
T TIGR02917 400 RTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQP-DNASLHNLLGAIYLGK 478 (899)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHhC
Confidence 888999999999999999999987532 345677788999999999999999999987644 3788999999999999
Q ss_pred CChhhHHHHHHHHHhcCCCCC-cccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHH
Q 038364 511 GSYQNVLTLLRGMQSLGFRPN-GSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEV 589 (1076)
Q Consensus 511 g~~~~Al~l~~~m~~~gi~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~l 589 (1076)
|++++|.+.|+++.+.. |+ ...+..+...+...|++++|.+.+..+.+.... +..++..+...|.+.|+.++|...
T Consensus 479 ~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 555 (899)
T TIGR02917 479 GDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAW 555 (899)
T ss_pred CCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998765 44 345666777888999999999999999987643 677889999999999999999999
Q ss_pred HhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCC
Q 038364 590 FDNMKN---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYP 666 (1076)
Q Consensus 590 f~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~p 666 (1076)
|+++.. .+...+..++..|.+.|++++|.++++++.+.. ..+..+|..+...|.+.|++++|...|+.+.+.. +.
T Consensus 556 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 633 (899)
T TIGR02917 556 LEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PD 633 (899)
T ss_pred HHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 998854 456788899999999999999999999998754 4467789999999999999999999999998753 33
Q ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHH
Q 038364 667 NVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLID 746 (1076)
Q Consensus 667 d~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~ 746 (1076)
+...|..+...|.+.|++++|.+.|+++.+. .+.+..++..+...+...|++++|..+++.+.+.. ..+...+..+..
T Consensus 634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 711 (899)
T TIGR02917 634 SALALLLLADAYAVMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGD 711 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHH
Confidence 6678999999999999999999999999864 23357788899999999999999999999998864 456778888999
Q ss_pred HHhhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038364 747 MYSKSGNLKSAREVFRKSAN--KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGW 824 (1076)
Q Consensus 747 ~y~k~G~~~~A~~vf~~m~~--~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~ 824 (1076)
.|.+.|++++|.+.|+.+.. ++..++..++..+.+.|+.++|.+.++++.+.. +.+...+..+...|...|+.++|.
T Consensus 712 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~ 790 (899)
T TIGR02917 712 LYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAI 790 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999998764 455778889999999999999999999999852 445667888888899999999999
Q ss_pred HHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCC
Q 038364 825 KYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFK-PDATIWGALLGSCRIHGHLEYAEIASRRLFKLE 902 (1076)
Q Consensus 825 ~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~-pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~ 902 (1076)
++|+++.+. .++++..+..+..++.+.|+ ++|++++++. ... -+..+|..+...+...|++++|...++++++.+
T Consensus 791 ~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 791 KHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999864 24557789999999999999 8899999986 333 355678889999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 038364 903 PCNSANYNLMMNLLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 903 P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~ 933 (1076)
|.++.++..++.+|.+.|++++|.+++++|.
T Consensus 868 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 868 PEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999985
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=267.79 Aligned_cols=106 Identities=53% Similarity=0.956 Sum_probs=99.2
Q ss_pred ceEEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHHCCcccCCCccccccchhhh--------hhhhhhccHHHHH
Q 038364 942 VWSWIQIDQIVHVFSAEGAPHPATGEIYFELYHLVSEMKKLGYVPDTRCVYQDIDEEEK--------GKVLLSHTEKLAI 1013 (1076)
Q Consensus 942 ~~swi~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~G~~pd~~~~~~~~~~~~k--------~~~~~~hse~la~ 1013 (1076)
||||+++ |.|++||.+||+. ++..+|...||.|++..+.|+++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7899887 9999999999996 566788889999999999999888766 6799999999999
Q ss_pred HHHhccCCCCCcEEEEecc-ccCchhHHHHHHHHhhcCceEEEecCCcccccc
Q 038364 1014 VYGLMKTKSRAPIRVIKNT-RVCSDCHTAAKYMSLVRGREIFLRDGARFHHFR 1065 (1076)
Q Consensus 1014 a~gl~~~~~~~~i~v~knl-r~c~dch~~~k~~s~~~~r~i~vrd~~rfh~f~ 1065 (1076)
||||+++ ||+||+ |||+|||+|+|+||+++||||||||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 999999 999999999999999999999999999999997
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-21 Score=256.66 Aligned_cols=636 Identities=11% Similarity=0.004 Sum_probs=381.3
Q ss_pred HHHHhCCCChHHHHHHHHHHHhCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChHH-------------
Q 038364 266 EDYESFGGEVQELLEVWGELHGKGVIF-RSRILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHL------------- 331 (1076)
Q Consensus 266 ~~~~~~g~~~~~al~lf~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~d~~~------------- 331 (1076)
+-....++. +.|.+.+.++... .| |...+......+...|+.++|.+..+.+.+.........
T Consensus 36 ~~~~~~~~~-d~a~~~l~kl~~~--~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~ 112 (1157)
T PRK11447 36 RLGEATHRE-DLVRQSLYRLELI--DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEG 112 (1157)
T ss_pred HHHHhhCCh-HHHHHHHHHHHcc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCch
Confidence 344556677 7888888877654 33 344566666667777888888888887777663221110
Q ss_pred --HHHHHHHHhcCCChHHHHHHHhhcCCC-CChhhHHH--HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038364 332 --KCALMNFYGKCRDVESANKLFSEVSDL-EDDLLWNE--IIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQAC 406 (1076)
Q Consensus 332 --~~~Li~~y~k~g~~~~A~~vf~~m~~~-~d~~s~n~--li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~ 406 (1076)
.-.+...+.+.|++++|.+.|+..... ++...... ........|+.++|++.|+++.+.. +-+......+...+
T Consensus 113 ~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll 191 (1157)
T PRK11447 113 RQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLL 191 (1157)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 111223455666666666666655430 11111100 0011112466666666666665542 22333444455555
Q ss_pred HccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHH
Q 038364 407 AKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFN 486 (1076)
Q Consensus 407 ~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~ 486 (1076)
...|+.++|.+.++.+.+..... ..............+....+ +..+...+..+-.....++|...+.
T Consensus 192 ~~~g~~~eAl~~l~~~~~~~~~~-~~aa~~~~~~l~~~~~~~~~-----------~~~l~~~l~~~p~~~~~~~A~~~L~ 259 (1157)
T PRK11447 192 FSSGRRDEGFAVLEQMAKSPAGR-DAAAQLWYGQIKDMPVSDAS-----------VAALQKYLQVFSDGDSVAAARSQLA 259 (1157)
T ss_pred HccCCHHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccCCChhh-----------HHHHHHHHHHCCCchHHHHHHHHHH
Confidence 55666666666666554422100 00000000000000000000 0011111111111112233333333
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-CcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCC
Q 038364 487 KMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRP-NGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDY 565 (1076)
Q Consensus 487 ~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~ 565 (1076)
++......|+... ......+...|++++|+..|++..+.. | |...+..+-.++.+.|++++|...+..+++.....
T Consensus 260 ~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~ 336 (1157)
T PRK11447 260 EQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHS 336 (1157)
T ss_pred HHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 3322222222111 122333444455555555555544433 3 22333344444445555555555555544433221
Q ss_pred ch-h------------HHHHHHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038364 566 DL-Y------------VGTSLMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEI 629 (1076)
Q Consensus 566 d~-~------------v~~aLi~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~ 629 (1076)
.. . ....+...+.+.|++++|...|++... .+...+..+...|.+.|++++|++.|++..+..
T Consensus 337 ~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~- 415 (1157)
T PRK11447 337 SNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD- 415 (1157)
T ss_pred cchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 10 0 112234556778888888888887764 355667777788888888888888888887653
Q ss_pred CCC-ccchhhhhhhhhhcCChhHHHHHHHHhHhcCCC--------CchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCC
Q 038364 630 KPD-LVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIY--------PNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIK 700 (1076)
Q Consensus 630 ~pd-~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~--------pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~ 700 (1076)
|+ ...+..+...|. .++.++|..+++.+...... -....+..+...+...|++++|++.|++..+ ..
T Consensus 416 -p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~--~~ 491 (1157)
T PRK11447 416 -PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA--LD 491 (1157)
T ss_pred -CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC
Confidence 33 334555555553 45678888777765432100 0122455677788889999999999999886 35
Q ss_pred CC-hhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCC----hH-----
Q 038364 701 PN-STTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKT----LA----- 770 (1076)
Q Consensus 701 pd-~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d----~~----- 770 (1076)
|+ ...+..+...+...|++++|...++.+++.. ..+...+..+...+.+.|+.++|...++.+.... ..
T Consensus 492 P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~ 570 (1157)
T PRK11447 492 PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQR 570 (1157)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHH
Confidence 54 4566777788889999999999999988742 2244455556667788999999999998876421 11
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHH
Q 038364 771 ----SWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSC 845 (1076)
Q Consensus 771 ----s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~ 845 (1076)
.+..+...+...|+.++|+.+++. ..++...+..+...+...|+.++|.+.|+...+. .|+ ...+..
T Consensus 571 l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~ 642 (1157)
T PRK11447 571 LQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLG 642 (1157)
T ss_pred HhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 122456778899999999999872 2344456667777899999999999999999864 454 678889
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCch------hHHHHHHHHH
Q 038364 846 MVDLLGKAGYLDEAWDFIRTMP-FKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSA------NYNLMMNLLA 917 (1076)
Q Consensus 846 li~~l~r~G~l~eA~~l~~~m~-~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~------~y~~L~~~y~ 917 (1076)
++.+|...|+.++|++.++... ..| +..++..+..++...|++++|...++++++..|+++. .+..++.++.
T Consensus 643 la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~ 722 (1157)
T PRK11447 643 LIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEA 722 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHH
Confidence 9999999999999999999873 444 4557778888899999999999999999998776543 5667799999
Q ss_pred HcCChHHHHHHHHHHHh
Q 038364 918 MSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 918 ~~G~~~eA~~~~~~m~~ 934 (1076)
+.|++++|.+.+++...
T Consensus 723 ~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 723 QTGQPQQALETYKDAMV 739 (1157)
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 99999999999988753
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.4e-21 Score=248.70 Aligned_cols=252 Identities=11% Similarity=0.012 Sum_probs=163.0
Q ss_pred hhhhhhhcCChhHHHHHHHHhHhcCCCC-chHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCC-hhhHHHHHHHHhcC
Q 038364 639 LVSGYSIWGQSKEALVIIHHMKNSGIYP-NVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPN-STTMSSLLQTCGGL 716 (1076)
Q Consensus 639 Li~~y~k~g~~~~A~~lf~~m~~~gi~p-d~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd-~~t~~~lL~a~~~~ 716 (1076)
+...+...|++++|.+.|++..+. .| +...+..+...|.+.|++++|...++++.+. .|+ ...+..+...+...
T Consensus 467 ~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~ 542 (1157)
T PRK11447 467 QAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGS 542 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhC
Confidence 334444455555555555554442 12 2233444444555555555555555554431 221 11222222223334
Q ss_pred CCchhHHHHHHHHHHcCCCCC---------hhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHH
Q 038364 717 GLLQNGKEIHCLCLKNGFIKD---------AYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKE 787 (1076)
Q Consensus 717 g~~~~a~~i~~~~~~~g~~~d---------~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~ 787 (1076)
++.++|...+..+.+....++ ......+.+.|...|+.++|.++++.- ..+...+..+...+.+.|+.++
T Consensus 543 ~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~-p~~~~~~~~La~~~~~~g~~~~ 621 (1157)
T PRK11447 543 DRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ-PPSTRIDLTLADWAQQRGDYAA 621 (1157)
T ss_pred CCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 444444444443322111111 112234677888999999999999843 3455677888999999999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHh
Q 038364 788 AILLFHELLETGFQPD-AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRT 865 (1076)
Q Consensus 788 Al~l~~~M~~~g~~Pd-~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~ 865 (1076)
|++.|++..+. .|+ ...+..+...+...|+.++|.+.++...+ ..|+ ...+..+..++.+.|+.++|.+++++
T Consensus 622 A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~---~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 622 ARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPA---TANDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc---cCCCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999984 565 45788888899999999999999998764 3444 45667788899999999999999998
Q ss_pred CC-C----CC---CHHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 038364 866 MP-F----KP---DATIWGALLGSCRIHGHLEYAEIASRRLFK 900 (1076)
Q Consensus 866 m~-~----~p---d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~ 900 (1076)
+. . .| +..++..+...+...|+.++|+..+++++.
T Consensus 697 al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 697 LIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 72 1 12 234666677889999999999999999974
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-18 Score=219.54 Aligned_cols=642 Identities=10% Similarity=-0.001 Sum_probs=427.3
Q ss_pred ccCChhhHHHHhhhcC---CCCcccHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhhHHH
Q 038364 239 EFGDFTSAAKAFFLYF---SRSYADWSSFLEDYESFGGEVQELLEVWGELHGKGVIFRSRILTIILKLCTKLMAFWLGVE 315 (1076)
Q Consensus 239 ~~g~~~~A~~~f~~~~---~~~~~~wn~li~~~~~~g~~~~~al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 315 (1076)
..|++++|...|...- +.+...+..+...|.+.|+. ++|+..+++..+. .|+...+...+... ++...+..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~-~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHD-DRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHH
Confidence 3589999998888753 23456778888889999999 9999998888765 45555555544333 77788888
Q ss_pred HHHHHHHhCCCCChHHHHHHHHH--------HhcCCChHHHHHHHhhcCCCCChh-hHHHHHHHHHhCCChhHHHHHHHH
Q 038364 316 VHASLIKRGFDFDVHLKCALMNF--------YGKCRDVESANKLFSEVSDLEDDL-LWNEIIMVKLRNEKWENAIKLFRE 386 (1076)
Q Consensus 316 ~~~~~~~~g~~~d~~~~~~Li~~--------y~k~g~~~~A~~vf~~m~~~~d~~-s~n~li~~~~~~g~~~eAl~lf~~ 386 (1076)
+++.+++... .+..++..|... |.+.+....|.+ .......++.. ..-.+...|.+.|++++|++++.+
T Consensus 130 ~ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 130 TVEELLAQQK-ACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHHHhCC-CChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 8888887653 344555555554 777766666666 22222212333 334447888889999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHc-cCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCC-----C
Q 038364 387 MQFSSAKAISRTIVKMLQACAK-VGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKD-----H 460 (1076)
Q Consensus 387 M~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~-----~ 460 (1076)
+.+.+.. +..-...+-.++.. .++ +.+..++.. .+..|..+..++.+.|.+.|+.++|.+++.+++. +
T Consensus 208 L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~ 281 (987)
T PRK09782 208 ARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDA 281 (987)
T ss_pred HHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCC
Confidence 8887633 33335555556666 355 556665332 3446778888888888899999999888888753 3
Q ss_pred ChhHHHHHHHHHHhCCChH-HHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHH
Q 038364 461 NLSSWNSMISSYTGLGYVD-VAWSLFNKMNSSRIQPDI-ITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVV 538 (1076)
Q Consensus 461 d~~s~n~lI~~~~~~g~~~-~A~~lf~~M~~~g~~pd~-~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~l 538 (1076)
+..+|--. +.+.+... .|..-|.+ ...++. ...-.++..+.+.++++.+.++.. +.|-.... .
T Consensus 282 ~~~~~~~~---l~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~ 346 (987)
T PRK09782 282 QEKSWLYL---LSKYSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEML--E 346 (987)
T ss_pred ccHHHHHH---HHhccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHH--H
Confidence 33344333 33433321 12111111 001011 111223667778888886665532 22333322 2
Q ss_pred HHHH--HhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--C----CHhHHHHHHHHHHh
Q 038364 539 LQAV--TELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN--R----NIVAWNSLISGYCF 610 (1076)
Q Consensus 539 l~a~--~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~--~----d~~~~n~lI~~~~~ 610 (1076)
+... ...+...++.+.+..+.+.... +....--+.-...+.|+.++|.++|+..-. + +...-+-++..|.+
T Consensus 347 ~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 425 (987)
T PRK09782 347 ERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLES 425 (987)
T ss_pred HHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHh
Confidence 2222 2335666666666666665322 222233333445677888888888877654 1 23344567777777
Q ss_pred cCC---hHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHh-cCC-CC--chHHHHHHHHHHhcCCC
Q 038364 611 KGL---FVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKN-SGI-YP--NVVTWTSLISGSLQNEN 683 (1076)
Q Consensus 611 ~g~---~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~-~gi-~p--d~~ty~~LI~~~~~~g~ 683 (1076)
.+. ..+++.+-..+- ..+- +.-.|+..++....+.... .+. .+ +...|..+..++.. ++
T Consensus 426 ~~~~~~~~~~~~l~~~~~-------~~~~------~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~ 491 (987)
T PRK09782 426 HPYLATPAKVAILSKPLP-------LAEQ------RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TL 491 (987)
T ss_pred CCcccchHHHHHhccccc-------cchh------HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CC
Confidence 776 334433332222 1111 1223344333333333322 111 23 56677878877776 88
Q ss_pred hhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHh
Q 038364 684 YRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRK 763 (1076)
Q Consensus 684 ~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~ 763 (1076)
.++|+..+.+... ..|+......+..++...|++++|...+..+... .|+...+..+...+.+.|+.++|.+.+++
T Consensus 492 ~~eAi~a~~~Al~--~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 492 PGVALYAWLQAEQ--RQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred cHHHHHHHHHHHH--hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8899998887765 3466555444455556899999999999887653 44445566778888999999999999988
Q ss_pred cCCCChHHHHHH---HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-
Q 038364 764 SANKTLASWNCM---IMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT- 839 (1076)
Q Consensus 764 m~~~d~~s~n~l---i~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~- 839 (1076)
..+.++..++.. .......|++++|+..|++..+ ..|+...+..+..++.+.|+.++|...+++..+ ..|+
T Consensus 568 AL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~ 642 (987)
T PRK09782 568 AEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNN 642 (987)
T ss_pred HHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCC
Confidence 776544333333 3334455999999999999998 678877888888899999999999999999875 3565
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
...++.+...+...|+.++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++.......+++..
T Consensus 643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 643 SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ 722 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH
Confidence 567888889999999999999999986 3445 56689999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHH
Q 038364 918 MSNRWEDVERLRHSMD 933 (1076)
Q Consensus 918 ~~G~~~eA~~~~~~m~ 933 (1076)
+..+++.|.+-+++--
T Consensus 723 ~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 723 QRFNFRRLHEEVGRRW 738 (987)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998777653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-18 Score=215.97 Aligned_cols=590 Identities=11% Similarity=0.005 Sum_probs=352.1
Q ss_pred CChhhHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhcCC-CC-ChhhHHHHHHHHHhCCChhHHHHHHH
Q 038364 308 MAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSD-LE-DDLLWNEIIMVKLRNEKWENAIKLFR 385 (1076)
Q Consensus 308 ~~~~~a~~~~~~~~~~g~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~-~~-d~~s~n~li~~~~~~g~~~eAl~lf~ 385 (1076)
|+.++|...+..+++..... ..++..|...|.+.|+.++|+..+++... .| |...+..+ ..+ +++++|.++++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i---~~~~kA~~~ye 132 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL-AAI---PVEVKSVTTVE 132 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh---ccChhHHHHHH
Confidence 56666666666666554333 55666666666666666666666665543 01 22223322 222 66666666666
Q ss_pred HHHHCCCCCC-HHHHHHHHHH--------HHccCCcHHHHHHHHHHHHhCCCCCHHHHHHH-HHHHHhCCChHHHHHHHH
Q 038364 386 EMQFSSAKAI-SRTIVKMLQA--------CAKVGAFHEGKQIHGYVLKSALESNLSVCNCL-ISMYSRNNKLELATRVFD 455 (1076)
Q Consensus 386 ~M~~~g~~p~-~~t~~~ll~a--------~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~L-i~~y~k~g~~~~A~~lf~ 455 (1076)
++.... |+ ..++..+... +.+. +++.+.+. .......|+..+.... ...|.+.|++++|.+++.
T Consensus 133 ~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 133 ELLAQQ--KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHhC--CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 666542 22 2222222222 2222 44444444 2223333344444444 666666666666666666
Q ss_pred hcCCCC---hhHHHHHHHHHHhC-CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-C
Q 038364 456 SMKDHN---LSSWNSMISSYTGL-GYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFR-P 530 (1076)
Q Consensus 456 ~m~~~d---~~s~n~lI~~~~~~-g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~-p 530 (1076)
++.+.+ ..-+..+-..|.+. ++ +++..+++. .++-|...+..+...|.+.|+.++|.++++++...-.. |
T Consensus 207 ~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~ 281 (987)
T PRK09782 207 EARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDA 281 (987)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCC
Confidence 664322 22234444455552 44 555555442 22235666666666666666666666666666543322 4
Q ss_pred CcccHHHHHHHHHhcCchHH-HHHHHHHHHHcCCCCc-hhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHH-
Q 038364 531 NGSSVSVVLQAVTELRLLKY-GRESHGYILRNGLDYD-LYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISG- 607 (1076)
Q Consensus 531 d~~t~~~ll~a~~~~g~~~~-a~~i~~~~~~~g~~~d-~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~- 607 (1076)
+..++.-++ .+.+.... +..-+.. .+.++ ....-.+++.+.+.+..+.|.++.+ ....+.. ..+..
T Consensus 282 ~~~~~~~~l---~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~r~~ 350 (987)
T PRK09782 282 QEKSWLYLL---SKYSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANEM---LEERYA 350 (987)
T ss_pred ccHHHHHHH---HhccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcchH---HHHHHh
Confidence 443333332 22222210 0000000 00001 1122334677777777776666633 2222221 12221
Q ss_pred -HHhcCChHHHHHHHHHHHHcCCCC-CccchhhhhhhhhhcCChhHHHHHHHHhHh-c-CCCCchHHHHHHHHHHhcCCC
Q 038364 608 -YCFKGLFVNAKKMLNQMEEEEIKP-DLVSWNSLVSGYSIWGQSKEALVIIHHMKN-S-GIYPNVVTWTSLISGSLQNEN 683 (1076)
Q Consensus 608 -~~~~g~~~~A~~lf~~M~~~g~~p-d~~t~~~Li~~y~k~g~~~~A~~lf~~m~~-~-gi~pd~~ty~~LI~~~~~~g~ 683 (1076)
....+...++.+.++.|.+.. | +....--+--...+.|+.++|.++|+.... . ...++...-+-++..|.+.+.
T Consensus 351 ~~~~~~~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 428 (987)
T PRK09782 351 VSVATRNKAEALRLARLLYQQE--PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY 428 (987)
T ss_pred hccccCchhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc
Confidence 122355556666666665441 2 222222222234466777777777777654 1 122233444456666666655
Q ss_pred ---hhHHHHH-------------------------HHHHhhcCCCC---ChhhHHHHHHHHhcCCCchhHHHHHHHHHHc
Q 038364 684 ---YRESLKF-------------------------FIQMQQEDIKP---NSTTMSSLLQTCGGLGLLQNGKEIHCLCLKN 732 (1076)
Q Consensus 684 ---~~eAl~l-------------------------~~~m~~~gi~p---d~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~ 732 (1076)
..+|+.+ +.... +..| +...|..+..++.. +..++|...+......
T Consensus 429 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al--~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~ 505 (987)
T PRK09782 429 LATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL--GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR 505 (987)
T ss_pred ccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc--ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh
Confidence 2233222 22222 2223 34455555555554 7888899988777763
Q ss_pred CCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHH
Q 038364 733 GFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN--KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAIT-FTA 809 (1076)
Q Consensus 733 g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t-~~~ 809 (1076)
.|+......+...+...|++++|...|+++.. ++...|..+...+.+.|+.++|...|++..+. .|+... +..
T Consensus 506 --~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~ 581 (987)
T PRK09782 506 --QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWW 581 (987)
T ss_pred --CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHH
Confidence 46654444455666799999999999997764 44556777888899999999999999999985 455543 333
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCC
Q 038364 810 LLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD-ATIWGALLGSCRIHGH 887 (1076)
Q Consensus 810 ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd-~~~~~~Ll~a~~~~g~ 887 (1076)
+.......|++++|...+++..+ +.|+...|..+..++.+.|+.++|++.+++. ...|+ ...+..+..++...|+
T Consensus 582 La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~ 658 (987)
T PRK09782 582 LHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD 658 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 34455567999999999999874 4678889999999999999999999999987 45555 5577888889999999
Q ss_pred chHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 888 LEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 888 ~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
.++|+..++++++++|+++..+..++.+|...|++++|+..+++..+..
T Consensus 659 ~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 659 IAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999986543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-17 Score=183.78 Aligned_cols=448 Identities=16% Similarity=0.178 Sum_probs=285.2
Q ss_pred HHHHHHHhCCChHHHHHHHHhcCCCChh---HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 038364 436 CLISMYSRNNKLELATRVFDSMKDHNLS---SWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGS 512 (1076)
Q Consensus 436 ~Li~~y~k~g~~~~A~~lf~~m~~~d~~---s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~ 512 (1076)
.|..-..+.|++++|.+--..+-..|.. ..-.+-.++.+..+.+....--....+...+ -..+|..+.+.+-..|+
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q-~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ-GAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccch-HHHHHHHHHHHHHHhch
Confidence 3444445566666666655444322211 1111223444444444443332222222222 45566666677777777
Q ss_pred hhhHHHHHHHHHhcCCCCC-cccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchh-HHHHHHHHHHhCCCHHHHHHHH
Q 038364 513 YQNVLTLLRGMQSLGFRPN-GSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLY-VGTSLMDMYVKNDCLQNAQEVF 590 (1076)
Q Consensus 513 ~~~Al~l~~~m~~~gi~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~-v~~aLi~~y~k~g~~~~A~~lf 590 (1076)
+++|+.+++.|.+.. |+ ...|..+-.++...|+.+.|.+.+...++.. |+.. +.+-+-+..-..|++++|...+
T Consensus 132 ~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 132 LQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred HHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHH
Confidence 777777777766644 43 2334444444555555555555555444432 2211 1222333333445555555554
Q ss_pred hhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCc-h
Q 038364 591 DNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKP-DLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPN-V 668 (1076)
Q Consensus 591 ~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~p-d~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd-~ 668 (1076)
.+.. +. .| =.+.|+.|...+-..|++..|+..|++..+. .|+ .
T Consensus 208 lkAi-------------------------------~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~ 252 (966)
T KOG4626|consen 208 LKAI-------------------------------ET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFL 252 (966)
T ss_pred HHHH-------------------------------hh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcch
Confidence 4433 22 12 2344555555555555555555555555432 232 2
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCC-hhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCC-hhhHHHHHH
Q 038364 669 VTWTSLISGSLQNENYRESLKFFIQMQQEDIKPN-STTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKD-AYVATGLID 746 (1076)
Q Consensus 669 ~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd-~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d-~~~~~~Li~ 746 (1076)
..|-.|...|...+.+++|+..+.+... ..|+ .+.+..+...|-..|.++.|...+++.++ ..|+ ...|+.|.+
T Consensus 253 dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~Nlan 328 (966)
T KOG4626|consen 253 DAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLAN 328 (966)
T ss_pred HHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHH
Confidence 3455555556666666666666666553 3454 34566666666677777777777777766 4444 456777888
Q ss_pred HHhhcCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHH
Q 038364 747 MYSKSGNLKSAREVFRKSAN--K-TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAI-TFTALLAACKNSGLVEE 822 (1076)
Q Consensus 747 ~y~k~G~~~~A~~vf~~m~~--~-d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~e 822 (1076)
++...|+..+|.+.+++... + -..+.|.|...|...|.+++|..+|....+ +.|+-. .++.|.+.|-+.|++++
T Consensus 329 ALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~ 406 (966)
T KOG4626|consen 329 ALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDD 406 (966)
T ss_pred HHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHH
Confidence 88888888888888776553 2 235677788888888888888888888887 677764 67888888999999999
Q ss_pred HHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCchHHHHHHHHHh
Q 038364 823 GWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPDA-TIWGALLGSCRIHGHLEYAEIASRRLF 899 (1076)
Q Consensus 823 A~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd~-~~~~~Ll~a~~~~g~~e~A~~~~~~l~ 899 (1076)
|...+++.. .+.|+ ...|+.|...|-..|+.++|.+.+.+. .+.|.- ...+.|...++..|++.+|+..++.++
T Consensus 407 Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 407 AIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 999988875 57888 568899999999999999999999886 566754 478899999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 900 KLEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 900 ~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
+++|+.+.+|..+...+.-...|.+-.+.++++
T Consensus 484 klkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 484 KLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKL 516 (966)
T ss_pred ccCCCCchhhhHHHHHHHHHhcccchHHHHHHH
Confidence 999999999999999888888887744444443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-17 Score=192.51 Aligned_cols=300 Identities=16% Similarity=0.138 Sum_probs=203.7
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchH
Q 038364 470 SSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLK 549 (1076)
Q Consensus 470 ~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~ 549 (1076)
..+...|++++|++.|.++.+.+.. +..+|..+...+.+.|++++|..+++.+...+ +....
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---~~~~~-------------- 104 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRP---DLTRE-------------- 104 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC---CCCHH--------------
Confidence 3455677888888888888776543 55677777777777788888887777776542 11000
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038364 550 YGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEE 626 (1076)
Q Consensus 550 ~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~ 626 (1076)
....++..+...|.+.|++++|..+|+++.+ .+..+++.++..|.+.|++++|.+.++.+.+
T Consensus 105 ---------------~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (389)
T PRK11788 105 ---------------QRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEK 169 (389)
T ss_pred ---------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 0123466778888999999999999988865 4667888899999999999999999999887
Q ss_pred cCCCCCc----cchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCC
Q 038364 627 EEIKPDL----VSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPN 702 (1076)
Q Consensus 627 ~g~~pd~----~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd 702 (1076)
.+..++. ..+..+...+.+.|++++|.+.|+++.+.. ..+...+..+...|.+.|++++|.++|+++.+.+....
T Consensus 170 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 170 LGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL 248 (389)
T ss_pred hcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence 6533221 134556677788889999999888887642 22455777788888888888888888888876432222
Q ss_pred hhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHH
Q 038364 703 STTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN--KTLASWNCMIMGFA 780 (1076)
Q Consensus 703 ~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d~~s~n~li~~~~ 780 (1076)
..++..+..++...|++++|...+..+.+. .|+...+..++..|.+.|++++|.++++++.+ |+..+++.++..+.
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence 345566666666667777777766666653 34444556666666666666666666665442 45556665555544
Q ss_pred H---cCCHHHHHHHHHHHHHCCCCCCHH
Q 038364 781 I---YGNGKEAILLFHELLETGFQPDAI 805 (1076)
Q Consensus 781 ~---~g~~~~Al~l~~~M~~~g~~Pd~~ 805 (1076)
. +|+.++++.++++|.+.+++|+..
T Consensus 327 ~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 327 AEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 3 446666666666666655555544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-16 Score=175.29 Aligned_cols=381 Identities=14% Similarity=0.160 Sum_probs=315.5
Q ss_pred HHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCChHHHH
Q 038364 542 VTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFKGLFVNAK 618 (1076)
Q Consensus 542 ~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~ 618 (1076)
+.+..+++...+--...++.... -..+|..+.+.|-..|++++|...++.+.+ +.+..|-.+..++...|+.+.|.
T Consensus 92 ~~q~~r~d~s~a~~~~a~r~~~q-~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~ 170 (966)
T KOG4626|consen 92 FFQGSRLDKSSAGSLLAIRKNPQ-GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAV 170 (966)
T ss_pred hhcccchhhhhhhhhhhhhccch-HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccH
Confidence 34444444444333333333222 345677889999999999999999998876 46789999999999999999999
Q ss_pred HHHHHHHHcCCCCCccchhh-hhhhhhhcCChhHHHHHHHHhHhcCCCCc-hHHHHHHHHHHhcCCChhHHHHHHHHHhh
Q 038364 619 KMLNQMEEEEIKPDLVSWNS-LVSGYSIWGQSKEALVIIHHMKNSGIYPN-VVTWTSLISGSLQNENYRESLKFFIQMQQ 696 (1076)
Q Consensus 619 ~lf~~M~~~g~~pd~~t~~~-Li~~y~k~g~~~~A~~lf~~m~~~gi~pd-~~ty~~LI~~~~~~g~~~eAl~l~~~m~~ 696 (1076)
+.|.+..+. .|+.+...+ +-......|++++|...+.+..+. .|. .+.|+.|...+-..|+..+|+..|++...
T Consensus 171 ~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk 246 (966)
T KOG4626|consen 171 QCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK 246 (966)
T ss_pred HHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhc
Confidence 999998865 576665543 333444579999999998887763 343 47899999999999999999999999975
Q ss_pred cCCCCCh-hhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCC-hhhHHHHHHHHhhcCCHHHHHHHHHhcCCCC---hHH
Q 038364 697 EDIKPNS-TTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKD-AYVATGLIDMYSKSGNLKSAREVFRKSANKT---LAS 771 (1076)
Q Consensus 697 ~gi~pd~-~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d-~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d---~~s 771 (1076)
+.|+- ..|..|-..+...+.++.|...+..+.. ..|+ ..++..|...|-..|.+|-|+..+++..+.+ ...
T Consensus 247 --ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~A 322 (966)
T KOG4626|consen 247 --LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDA 322 (966)
T ss_pred --CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHH
Confidence 56663 5788888888888999999988888776 4554 5667778889999999999999999887533 469
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHH
Q 038364 772 WNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDL 849 (1076)
Q Consensus 772 ~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~ 849 (1076)
||.|..++...|+..+|+..|.+.+. +.|+. ...+.|...+...|.+++|..+|.... .+.|. ....+.|...
T Consensus 323 y~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i 397 (966)
T KOG4626|consen 323 YNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASI 397 (966)
T ss_pred HhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHH
Confidence 99999999999999999999999998 67776 478889999999999999999999885 45666 5678899999
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHH
Q 038364 850 LGKAGYLDEAWDFIRTM-PFKPDAT-IWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVER 927 (1076)
Q Consensus 850 l~r~G~l~eA~~l~~~m-~~~pd~~-~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~ 927 (1076)
|-+.|++++|...+++. .++|... .++.+.+.|...|+++.|...+.+++.++|.-.+++..|+.+|-.+|+..+|..
T Consensus 398 ~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~ 477 (966)
T KOG4626|consen 398 YKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQ 477 (966)
T ss_pred HHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHH
Confidence 99999999999999986 6888755 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCC
Q 038364 928 LRHSMDEVG 936 (1076)
Q Consensus 928 ~~~~m~~~g 936 (1076)
-++......
T Consensus 478 sY~~aLklk 486 (966)
T KOG4626|consen 478 SYRTALKLK 486 (966)
T ss_pred HHHHHHccC
Confidence 999886544
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-16 Score=184.75 Aligned_cols=293 Identities=16% Similarity=0.143 Sum_probs=203.6
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhCCCh
Q 038364 371 KLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESN---LSVCNCLISMYSRNNKL 447 (1076)
Q Consensus 371 ~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d---~~v~n~Li~~y~k~g~~ 447 (1076)
+...|++++|++.|.++.+.+ +.+..++..+...+...|+++.|..+++.+++.+..++ ..++..|...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 445566666666666666542 22333555555555666666666666665555432111 24566777777788888
Q ss_pred HHHHHHHHhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCChhhHHHHH
Q 038364 448 ELATRVFDSMKD---HNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDI----ITWNCLLSGHFTHGSYQNVLTLL 520 (1076)
Q Consensus 448 ~~A~~lf~~m~~---~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~----~ty~~Li~~~~~~g~~~~Al~l~ 520 (1076)
++|..+|+++.+ .+..+++.++..+.+.|++++|.+.|+++.+.+..++. ..|..+...+.+.|++++|.+.|
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 888888877754 35567777777888888888888888877766543321 23445555666667777777777
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--CC-
Q 038364 521 RGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN--RN- 597 (1076)
Q Consensus 521 ~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~--~d- 597 (1076)
+++.+.. |+ +...+..+...|.+.|++++|.+.|+++.. |+
T Consensus 204 ~~al~~~--p~----------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 204 KKALAAD--PQ----------------------------------CVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHhHC--cC----------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 7666543 32 223455566777788888888888887764 32
Q ss_pred -HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHH
Q 038364 598 -IVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLIS 676 (1076)
Q Consensus 598 -~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~ 676 (1076)
..+++.++.+|.+.|+.++|.+.++++.+. .|+...+..+...+.+.|++++|.++|+++.+. .|+..+++.++.
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~ 323 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLD 323 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHH
Confidence 345778888888889999999999888876 467667788888999999999999999988765 688888988888
Q ss_pred HHhc---CCChhHHHHHHHHHhhcCCCCChh
Q 038364 677 GSLQ---NENYRESLKFFIQMQQEDIKPNST 704 (1076)
Q Consensus 677 ~~~~---~g~~~eAl~l~~~m~~~gi~pd~~ 704 (1076)
.+.. .|+.++++.++++|.+.+++|++.
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7775 568889999999999887777766
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.2e-14 Score=164.57 Aligned_cols=548 Identities=13% Similarity=0.057 Sum_probs=382.5
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--ccCCcHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHhCCChHHHHH
Q 038364 377 WENAIKLFREMQFSSAKAISRTIVKMLQACA--KVGAFHEGKQIHGYVLKSA--LESNLSVCNCLISMYSRNNKLELATR 452 (1076)
Q Consensus 377 ~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~--~~g~~~~a~~i~~~~~~~g--~~~d~~v~n~Li~~y~k~g~~~~A~~ 452 (1076)
.+.|...|....+.. ++|. ..-+.+||. ..+++..+..+|..++... ..+|+.+... ..+.++|+.+.|+.
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Ni--l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig--~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNI--LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIG--HCFWKLGMSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHHhhC-Ccch--HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhh--hHHHhccchhhHHH
Confidence 478888888776542 2332 234455554 4468888888888866554 4566655432 56678899999999
Q ss_pred HHHhcCCCChhHHHHHHHHH------HhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 038364 453 VFDSMKDHNLSSWNSMISSY------TGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSL 526 (1076)
Q Consensus 453 lf~~m~~~d~~s~n~lI~~~------~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~ 526 (1076)
.|.+..+-|...-++++.-. -....+..++.++.+.-..... |++..+.|.+.|.-.|+++.+..+...+...
T Consensus 221 a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 221 AFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 99888766655545444321 1123355677777666655554 7888888999999999999999998888765
Q ss_pred CCC--CCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-CHhHH
Q 038364 527 GFR--PNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN--R-NIVAW 601 (1076)
Q Consensus 527 gi~--pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~--~-d~~~~ 601 (1076)
... .-...|--+-+++-..|+++.|...+-...+.....-+..+-.|..||.+.|+++.|...|+.+.. | +..+.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence 311 112346667788888999999999988877765443344456788999999999999999998865 3 44566
Q ss_pred HHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhH----hcCCCCchHHHHH
Q 038364 602 NSLISGYCFKG----LFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMK----NSGIYPNVVTWTS 673 (1076)
Q Consensus 602 n~lI~~~~~~g----~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~----~~gi~pd~~ty~~ 673 (1076)
..+-..|+..+ ..++|..++.+..+.- ..|...|..+..+|-.. +...++..|.... ..+-.+-.+..|.
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 66666777665 4566666666665443 23555666666665544 3333366665433 4555577888999
Q ss_pred HHHHHhcCCChhHHHHHHHHHhhc---CCCCCh-----hhHHHHHHHH-hcCCCchhHHHHHHHHHHcCCCCC-hhhHHH
Q 038364 674 LISGSLQNENYRESLKFFIQMQQE---DIKPNS-----TTMSSLLQTC-GGLGLLQNGKEIHCLCLKNGFIKD-AYVATG 743 (1076)
Q Consensus 674 LI~~~~~~g~~~eAl~l~~~m~~~---gi~pd~-----~t~~~lL~a~-~~~g~~~~a~~i~~~~~~~g~~~d-~~~~~~ 743 (1076)
+...+...|++++|.+.|.+.... ...+|. +|..--+..| -..++.+.|.+.+..+++. .|. +..|--
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylR 535 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLR 535 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHH
Confidence 999999999999999999988754 233343 2333333333 4567899999999999884 232 223333
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh---
Q 038364 744 LIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLET-GFQPDAITFTALLAACKN--- 816 (1076)
Q Consensus 744 Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~-g~~Pd~~t~~~ll~a~~~--- 816 (1076)
|.-|--..+...+|...++...+ .++..|.-+...+.+..++..|-+-|+..... -..+|..+..+|-+.|..
T Consensus 536 l~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~ 615 (1018)
T KOG2002|consen 536 LGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH 615 (1018)
T ss_pred hhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence 33333334677788888887653 57788888888899988888888877666542 234777777777775543
Q ss_pred ---------cCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHc
Q 038364 817 ---------SGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMP--FKPDATIWGALLGSCRIH 885 (1076)
Q Consensus 817 ---------~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~--~~pd~~~~~~Ll~a~~~~ 885 (1076)
.+..+.|.++|.+..+. -+-+...-|-+.-.++..|++.+|..+|.+.. ......+|-.+...|...
T Consensus 616 ~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~ 693 (1018)
T KOG2002|consen 616 NPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQ 693 (1018)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHH
Confidence 34466788888777642 23346667778889999999999999998873 223456899999999999
Q ss_pred CCchHHHHHHHHHhcC--CCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 886 GHLEYAEIASRRLFKL--EPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 886 g~~e~A~~~~~~l~~l--~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
|++-.|+++|+..+.. ..++++...+|+.++.+.|+|.+|.+.....+..-
T Consensus 694 ~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 694 GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 9999999999998764 34567788999999999999999999888775543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.75 E-value=8e-15 Score=181.21 Aligned_cols=425 Identities=13% Similarity=0.059 Sum_probs=246.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCc-ccHHHHHHHH
Q 038364 464 SWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNG-SSVSVVLQAV 542 (1076)
Q Consensus 464 s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~-~t~~~ll~a~ 542 (1076)
.+...-..|.+.|++++|++.|++.... .|+...|..+..+|.+.|++++|++.+++..+.. |+. ..+..+-.++
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHH
Confidence 4556667788888999999999887754 4677788888888888888888888888887754 543 3455555666
Q ss_pred HhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 038364 543 TELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLN 622 (1076)
Q Consensus 543 ~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~ 622 (1076)
...|++++|..-+..+.......+..... ++.-+.+....+.+...++.-+ .+..+|..+-. |......+.+..-+.
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQ-AVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLE 281 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHH-HHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhh
Confidence 66677766666555444332211111111 1111111111222222222211 11222222111 111111111111111
Q ss_pred HHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcC-CCC
Q 038364 623 QMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQED-IKP 701 (1076)
Q Consensus 623 ~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~g-i~p 701 (1076)
+-. .-+...-..++..+.. ..-....+++++|++.|++..+.+ ..|
T Consensus 282 ~~~----~~~~~~~~~~~~l~~~-----------------------------~~e~~~~~~y~~A~~~~~~al~~~~~~~ 328 (615)
T TIGR00990 282 DSN----ELDEETGNGQLQLGLK-----------------------------SPESKADESYEEAARAFEKALDLGKLGE 328 (615)
T ss_pred ccc----ccccccccchHHHHHH-----------------------------HHHhhhhhhHHHHHHHHHHHHhcCCCCh
Confidence 000 0000000000000000 000012244555555555555432 122
Q ss_pred C-hhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCC-hhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHH
Q 038364 702 N-STTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKD-AYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMI 776 (1076)
Q Consensus 702 d-~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d-~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li 776 (1076)
+ ...+..+...+...|++++|...+..+++. .|+ ...|..+...|...|++++|...|++..+ .+...|..+.
T Consensus 329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 406 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRA 406 (615)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2 233444444444555666666665555552 333 34556666777777777777777776543 3456777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcC
Q 038364 777 MGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAG 854 (1076)
Q Consensus 777 ~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G 854 (1076)
..+...|++++|+..|++..+ +.|+. ..+..+...+...|++++|...|++..+. .|+ ...|+.+..+|...|
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQN 481 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcc
Confidence 778888888888888888777 45554 45555666677888888888888887653 343 567778888888888
Q ss_pred CHHHHHHHHHhC-CCCCCH-------H-HHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHH
Q 038364 855 YLDEAWDFIRTM-PFKPDA-------T-IWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDV 925 (1076)
Q Consensus 855 ~l~eA~~l~~~m-~~~pd~-------~-~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA 925 (1076)
++++|.+.|++. ...|+. . .++..+..+...|++++|+..++++++++|++...+..|+.+|.+.|++++|
T Consensus 482 ~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 482 KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 888888888774 333321 1 1122222334468999999999999999999888899999999999999999
Q ss_pred HHHHHHHHhC
Q 038364 926 ERLRHSMDEV 935 (1076)
Q Consensus 926 ~~~~~~m~~~ 935 (1076)
.+.+++..+.
T Consensus 562 i~~~e~A~~l 571 (615)
T TIGR00990 562 LKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHH
Confidence 9999887543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-12 Score=152.79 Aligned_cols=551 Identities=12% Similarity=0.068 Sum_probs=285.6
Q ss_pred hCCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC---h
Q 038364 373 RNEKWENAIKLFREMQFS--SAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNK---L 447 (1076)
Q Consensus 373 ~~g~~~eAl~lf~~M~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~---~ 447 (1076)
..|++..|+.+|...... ...||+.. .+-..+.+.++.+.|+.-+..+++..+ .++..+-.|-.+-....+ +
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~ 252 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSY 252 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHH
Confidence 345666666666664432 23344322 122333455666666666665555432 112222221111111222 2
Q ss_pred HHHHHHHHhc---CCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCChhhHHHHHHH
Q 038364 448 ELATRVFDSM---KDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQP--DIITWNCLLSGHFTHGSYQNVLTLLRG 522 (1076)
Q Consensus 448 ~~A~~lf~~m---~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~p--d~~ty~~Li~~~~~~g~~~~Al~l~~~ 522 (1076)
..+..++.+. ...|.+..|.|-+-|.-.|+++.++.+...+......- -..+|-.+..+|-..|++++|...|.+
T Consensus 253 ~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~ 332 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME 332 (1018)
T ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 2333333322 23455666666666666666666666666665432110 123455566666666666666666665
Q ss_pred HHhcCCCCCcccHH--HHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCC----CHHHHHHHHhhcCCC
Q 038364 523 MQSLGFRPNGSSVS--VVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKND----CLQNAQEVFDNMKNR 596 (1076)
Q Consensus 523 m~~~gi~pd~~t~~--~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g----~~~~A~~lf~~m~~~ 596 (1076)
..+.. ||.+++. -+...+...|+++.+...|+.+.+.... +..+...|...|...+ ..+.|..+..+...+
T Consensus 333 s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 333 SLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred HHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 55443 4443332 3444556666666666666666654322 3334444444454443 345555555544432
Q ss_pred ---CHhHHHHHHHHHHhcCChHHHHHHHHHH----HHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhc---CCCC
Q 038364 597 ---NIVAWNSLISGYCFKGLFVNAKKMLNQM----EEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNS---GIYP 666 (1076)
Q Consensus 597 ---d~~~~n~lI~~~~~~g~~~~A~~lf~~M----~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~---gi~p 666 (1076)
|...|-.+-..|-+..-+ .++..|... ...+..+.....|.+...+...|++++|...|.+.... ...+
T Consensus 410 ~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~ 488 (1018)
T KOG2002|consen 410 TPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK 488 (1018)
T ss_pred ccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence 344444444444333322 224444332 23344455566666666666677777777766665543 1122
Q ss_pred ch------HHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhh-HHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChh
Q 038364 667 NV------VTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTT-MSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAY 739 (1076)
Q Consensus 667 d~------~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t-~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~ 739 (1076)
|. .+--.+...+-..++.+.|.+.|...... .|+.+. |..++......+...++...+..+... ...++.
T Consensus 489 de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~ 565 (1018)
T KOG2002|consen 489 DEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPN 565 (1018)
T ss_pred cccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcH
Confidence 22 11122344445556666666777666652 444332 222322222334555666666555552 234455
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhcCC-----CChHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHCCCCC
Q 038364 740 VATGLIDMYSKSGNLKSAREVFRKSAN-----KTLASWNCMIMGFAI------------YGNGKEAILLFHELLETGFQP 802 (1076)
Q Consensus 740 ~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d~~s~n~li~~~~~------------~g~~~~Al~l~~~M~~~g~~P 802 (1076)
+++.+.+.|.+...|.-|.+-|..+.. .|..+.-+|.+.|.+ .+..++|+++|.+.+.. .|
T Consensus 566 arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dp 643 (1018)
T KOG2002|consen 566 ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DP 643 (1018)
T ss_pred HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--Cc
Confidence 555566666666666666664443332 233333333333322 23445666666666652 33
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHH
Q 038364 803 -DAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM----PFKPDATIWGA 877 (1076)
Q Consensus 803 -d~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m----~~~pd~~~~~~ 877 (1076)
|...-+.+.-.+++.|++++|..+|.+..+. ......+|-.+...|..+|++-.|.++|+.. .-+-+..+...
T Consensus 644 kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~ 721 (1018)
T KOG2002|consen 644 KNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHY 721 (1018)
T ss_pred chhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 3344455555566677777777777776653 2233455666666777777777777776654 12335556666
Q ss_pred HHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHH-------------------HHHHcCChHHHHHHHHHHHhCCC
Q 038364 878 LLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMN-------------------LLAMSNRWEDVERLRHSMDEVGV 937 (1076)
Q Consensus 878 Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~-------------------~y~~~G~~~eA~~~~~~m~~~g~ 937 (1076)
|..++...|.+.+|.+.+..++.+.|.++..-..++- +....+..++|.++|..|...+-
T Consensus 722 Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6677777777777777777777777766554333332 23444567889999999977653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.4e-14 Score=174.98 Aligned_cols=388 Identities=12% Similarity=0.008 Sum_probs=254.2
Q ss_pred HHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCChH
Q 038364 539 LQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFKGLFV 615 (1076)
Q Consensus 539 l~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~ 615 (1076)
+....-.|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++... .+...+..+...+...|+.+
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 333444455555555555444311 22334456666667777777777777776432 34556666677777777777
Q ss_pred HHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCC-chHHHHHHHHHHhcCCChhHHHHHHHHH
Q 038364 616 NAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYP-NVVTWTSLISGSLQNENYRESLKFFIQM 694 (1076)
Q Consensus 616 ~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~p-d~~ty~~LI~~~~~~g~~~eAl~l~~~m 694 (1076)
+|+..+++..+. .|+...+..+...+...|+.++|...++++.+. .| +...+..+...+.+.|..++|++.+++.
T Consensus 101 eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 101 EALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 777777777655 233222666666777777777777777777764 23 3444555666777777777777777665
Q ss_pred hhcCCCCChh------hHHHHHHHHh-----cCCCc---hhHHHHHHHHHHc-CCCCChh--hHHHH---HHHHhhcCCH
Q 038364 695 QQEDIKPNST------TMSSLLQTCG-----GLGLL---QNGKEIHCLCLKN-GFIKDAY--VATGL---IDMYSKSGNL 754 (1076)
Q Consensus 695 ~~~gi~pd~~------t~~~lL~a~~-----~~g~~---~~a~~i~~~~~~~-g~~~d~~--~~~~L---i~~y~k~G~~ 754 (1076)
.. .|+.. ....++.... ..+.+ ++|.+.++.+++. ...|+.. ...+. +-++...|++
T Consensus 177 ~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~ 253 (765)
T PRK10049 177 NL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRY 253 (765)
T ss_pred CC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhH
Confidence 43 23210 1111111111 11122 4566666666653 1223221 11111 2234566899
Q ss_pred HHHHHHHHhcCCCC--hHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHH
Q 038364 755 KSAREVFRKSANKT--LASW--NCMIMGFAIYGNGKEAILLFHELLETGFQPD-----AITFTALLAACKNSGLVEEGWK 825 (1076)
Q Consensus 755 ~~A~~vf~~m~~~d--~~s~--n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd-----~~t~~~ll~a~~~~g~~~eA~~ 825 (1076)
++|++.|+.+.+.+ ...+ -.+...|...|++++|+..|+++.+. .|. ......+..++...|++++|.+
T Consensus 254 ~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~ 331 (765)
T PRK10049 254 KDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGALT 331 (765)
T ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 99999999887542 1111 22567888999999999999998763 332 2345556667888999999999
Q ss_pred HHHHhhhcCC----------CCCC---cccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchH
Q 038364 826 YFDSMSTDYN----------IIPT---IEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEY 890 (1076)
Q Consensus 826 ~~~~m~~~~g----------~~p~---~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~ 890 (1076)
+++.+.+... -.|+ ...+..+..++...|++++|++.++++ . .+.+...|..+...+...|+.++
T Consensus 332 ~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~ 411 (765)
T PRK10049 332 VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRA 411 (765)
T ss_pred HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 9998875411 1122 123456778899999999999999987 2 33456688899999999999999
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 891 AEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 891 A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
|+..++++++++|++...+..++..+.+.|+|++|+++++++.+..
T Consensus 412 A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 412 AENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999987654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.70 E-value=4e-13 Score=166.18 Aligned_cols=444 Identities=11% Similarity=0.009 Sum_probs=260.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 038364 433 VCNCLISMYSRNNKLELATRVFDSMK--DHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTH 510 (1076)
Q Consensus 433 v~n~Li~~y~k~g~~~~A~~lf~~m~--~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~ 510 (1076)
.+..+...|.+.|++++|...|++.. .|+...|..+..+|.+.|++++|++.+++..+.... +...|..+..+|...
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHc
Confidence 45667788999999999999999873 467788999999999999999999999999887654 677899999999999
Q ss_pred CChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHH
Q 038364 511 GSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVF 590 (1076)
Q Consensus 511 g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf 590 (1076)
|++++|+.-|......+- .+......++..... ..+........+... .+...+..+ ..|......+.+..-+
T Consensus 208 g~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 208 GKYADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFV-GNYLQSFRPKPRPAGL 280 (615)
T ss_pred CCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHH-HHHHHHccCCcchhhh
Confidence 999999999887765431 111111122221111 122222222333222 122222222 2232222222221112
Q ss_pred hhcCCCCHh---HHHHHHHH---HHhcCChHHHHHHHHHHHHcC-CCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcC
Q 038364 591 DNMKNRNIV---AWNSLISG---YCFKGLFVNAKKMLNQMEEEE-IKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSG 663 (1076)
Q Consensus 591 ~~m~~~d~~---~~n~lI~~---~~~~g~~~~A~~lf~~M~~~g-~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~g 663 (1076)
+...+-+.. .+..+... ....+++++|++.|++..+.+ ..|+
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~------------------------------- 329 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEK------------------------------- 329 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChh-------------------------------
Confidence 211111110 11111100 012245555555555555432 1111
Q ss_pred CCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCC-hhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHH
Q 038364 664 IYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPN-STTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVAT 742 (1076)
Q Consensus 664 i~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd-~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~ 742 (1076)
+...|+.+...+...|++++|+..|++..+ ..|+ ...|..+...+...|++++|...+..+++. ...+..++.
T Consensus 330 ---~a~a~~~lg~~~~~~g~~~eA~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~p~~~~~~~ 403 (615)
T TIGR00990 330 ---EAIALNLRGTFKCLKGKHLEALADLSKSIE--LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-NSEDPDIYY 403 (615)
T ss_pred ---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHH
Confidence 223344444444444444444444444443 2232 224444444444555555555555555442 122345666
Q ss_pred HHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 038364 743 GLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD-AITFTALLAACKNSG 818 (1076)
Q Consensus 743 ~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd-~~t~~~ll~a~~~~g 818 (1076)
.+...|...|++++|.+.|++..+ .+...|..+...+.+.|+.++|+..|++..+ ..|+ ...+..+...+...|
T Consensus 404 ~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 404 HRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQN 481 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcc
Confidence 677777777777777777776553 2445666777778888888888888888776 3454 356666777778888
Q ss_pred CHHHHHHHHHHhhhcCCCCCCc--cc------HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCc
Q 038364 819 LVEEGWKYFDSMSTDYNIIPTI--EH------YSCMVDLLGKAGYLDEAWDFIRTM-PFKPDA-TIWGALLGSCRIHGHL 888 (1076)
Q Consensus 819 ~~~eA~~~~~~m~~~~g~~p~~--~~------y~~li~~l~r~G~l~eA~~l~~~m-~~~pd~-~~~~~Ll~a~~~~g~~ 888 (1076)
++++|.+.|+...+. .|+. .. ++.....+...|++++|.+++++. ...|+. ..|..+...+...|++
T Consensus 482 ~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 482 KFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred CHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCH
Confidence 888888888876542 3321 11 111222344468999999998885 455554 4688888999999999
Q ss_pred hHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 889 EYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 889 e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
++|...++++.++.+...+. .....|.+|.++....++
T Consensus 559 ~eAi~~~e~A~~l~~~~~e~--------~~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 559 DEALKLFERAAELARTEGEL--------VQAISYAEATRTQIQVQE 596 (615)
T ss_pred HHHHHHHHHHHHHhccHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 99999999999887764332 233345666666555543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-13 Score=173.26 Aligned_cols=396 Identities=12% Similarity=0.034 Sum_probs=236.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCc-ccHHHHHHHHHhcCc
Q 038364 469 ISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNG-SSVSVVLQAVTELRL 547 (1076)
Q Consensus 469 I~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~-~t~~~ll~a~~~~g~ 547 (1076)
+......|+.++|++++.+..... ..+...+..+...+.+.|++++|.++|++..+.. |+. .....+...+...|+
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCC
Confidence 344556777777777777776522 2244457777777777777777777777766543 432 223333334444555
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038364 548 LKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEE 627 (1076)
Q Consensus 548 ~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~ 627 (1076)
.++|...++.+++.... +.. +..+...|...|+.++|...+ +++.+.
T Consensus 99 ~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l-------------------------------~~al~~ 145 (765)
T PRK10049 99 YDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAM-------------------------------TQALPR 145 (765)
T ss_pred HHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHH-------------------------------HHHHHh
Confidence 55555555555444221 222 444444444455555555554 444433
Q ss_pred CCCCCc-cchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCch------HHHHHHHHHH-----hcCCCh---hHHHHHHH
Q 038364 628 EIKPDL-VSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNV------VTWTSLISGS-----LQNENY---RESLKFFI 692 (1076)
Q Consensus 628 g~~pd~-~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~------~ty~~LI~~~-----~~~g~~---~eAl~l~~ 692 (1076)
.|+. ..+..+...+...|..++|.+.++.... .|+. .....++... ...+++ ++|++.++
T Consensus 146 --~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 146 --APQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred --CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 2222 2223333444444444444444443332 1110 0011111111 122233 56777777
Q ss_pred HHhhc-CCCCChh-hHH----HHHHHHhcCCCchhHHHHHHHHHHcCCC-CChhhHHHHHHHHhhcCCHHHHHHHHHhcC
Q 038364 693 QMQQE-DIKPNST-TMS----SLLQTCGGLGLLQNGKEIHCLCLKNGFI-KDAYVATGLIDMYSKSGNLKSAREVFRKSA 765 (1076)
Q Consensus 693 ~m~~~-gi~pd~~-t~~----~lL~a~~~~g~~~~a~~i~~~~~~~g~~-~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 765 (1076)
.+.+. ...|+.. .+. ..+.++...++.++|...++.+.+.+-. |+. ....+...|...|++++|...|+++.
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 77643 2223221 111 1133445567778888888777775422 221 22235677888888888888888765
Q ss_pred CCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHHhcCCHHHHH
Q 038364 766 NKT-------LASWNCMIMGFAIYGNGKEAILLFHELLETG-----------FQPDA---ITFTALLAACKNSGLVEEGW 824 (1076)
Q Consensus 766 ~~d-------~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g-----------~~Pd~---~t~~~ll~a~~~~g~~~eA~ 824 (1076)
+.+ ...+..+..++...|++++|+.+++++.+.. -.|+. ..+..+...+...|+.++|.
T Consensus 300 ~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~ 379 (765)
T PRK10049 300 YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAE 379 (765)
T ss_pred hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 432 1234556667888889999998888888641 12332 23445556788899999999
Q ss_pred HHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCC
Q 038364 825 KYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLE 902 (1076)
Q Consensus 825 ~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~ 902 (1076)
++++++... .+.+...+..+..++...|+.++|++.+++. ...|| ...+..+.......|++++|+.+++++++..
T Consensus 380 ~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 380 MRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999998764 2334678889999999999999999999987 45666 4567777778889999999999999999999
Q ss_pred CCCchh
Q 038364 903 PCNSAN 908 (1076)
Q Consensus 903 P~~~~~ 908 (1076)
|+++.+
T Consensus 458 Pd~~~~ 463 (765)
T PRK10049 458 PQDPGV 463 (765)
T ss_pred CCCHHH
Confidence 998644
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-12 Score=140.66 Aligned_cols=475 Identities=13% Similarity=0.132 Sum_probs=295.9
Q ss_pred cccHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHh--ccCChhhH-HHHHHHHHHhCCCCChHHHHH
Q 038364 258 YADWSSFLEDYESFGGEVQELLEVWGELHGKGVIFRSRILTIILKLCT--KLMAFWLG-VEVHASLIKRGFDFDVHLKCA 334 (1076)
Q Consensus 258 ~~~wn~li~~~~~~g~~~~~al~lf~~m~~~g~~p~~~t~~~ll~a~~--~~~~~~~a-~~~~~~~~~~g~~~d~~~~~~ 334 (1076)
+++=|.|+..- ..|.. +++.-+|++|+..|+..+.-.-..+++.-+ ...+...+ ++.+-.+.+.|-++ ..+|
T Consensus 116 V~~E~nL~kmI-S~~Ev-KDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S-~~sW-- 190 (625)
T KOG4422|consen 116 VETENNLLKMI-SSREV-KDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS-TSSW-- 190 (625)
T ss_pred hcchhHHHHHH-hhccc-chhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc-cccc--
Confidence 44556666544 45666 889999999999998877766556655433 22333222 23333333444221 1122
Q ss_pred HHHHHhcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHH
Q 038364 335 LMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHE 414 (1076)
Q Consensus 335 Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~ 414 (1076)
|.|.+.+ -+|+..| +...++..||.|+++--..+.|.+++++-.....+.+..+|+.+|.+.+- ..
T Consensus 191 ------K~G~vAd--L~~E~~P--KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~ 256 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFETLP--KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SV 256 (625)
T ss_pred ------ccccHHH--HHHhhcC--CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hc
Confidence 4455554 5566665 57789999999999999999999999999988889999999999988653 34
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC
Q 038364 415 GKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQ 494 (1076)
Q Consensus 415 a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~ 494 (1076)
++.+...|+...+.||..++|+++...++.|+++.|++. |++++.+|++.|+.
T Consensus 257 ~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVe 309 (625)
T KOG4422|consen 257 GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVE 309 (625)
T ss_pred cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCC
Confidence 588999999999999999999999999999999988754 67789999999999
Q ss_pred CChhhHHHHHHHHHhcCChhh-HHHHHHHHHh----cCCCC----CcccHHHHHHHHHhcCchHHHHHHHHHHHHcC---
Q 038364 495 PDIITWNCLLSGHFTHGSYQN-VLTLLRGMQS----LGFRP----NGSSVSVVLQAVTELRLLKYGRESHGYILRNG--- 562 (1076)
Q Consensus 495 pd~~ty~~Li~~~~~~g~~~~-Al~l~~~m~~----~gi~p----d~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g--- 562 (1076)
|...+|..+|..+++.++..+ |..++.+.+. ..++| |..-|...+..|.+..+.+.|.++++......
T Consensus 310 PsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~ 389 (625)
T KOG4422|consen 310 PSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWK 389 (625)
T ss_pred cchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh
Confidence 999999999999999887754 5555555543 33444 34567888999999999999999998765321
Q ss_pred -CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhh
Q 038364 563 -LDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVS 641 (1076)
Q Consensus 563 -~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~ 641 (1076)
+.++. ....-|..+....|+....+.-+..++.|.-.-+-|+..+...++.
T Consensus 390 ~ig~~~----------------------------~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 390 FIGPDQ----------------------------HRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred hcChHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 11110 0112233344445555555556666666655555566666666667
Q ss_pred hhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChh---hHHHHHHHHhcCCC
Q 038364 642 GYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNST---TMSSLLQTCGGLGL 718 (1076)
Q Consensus 642 ~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~---t~~~lL~a~~~~g~ 718 (1076)
+..-.|.++-..+++..+...|-.-+... -.+++..|......|+.. -+..+..-|+. +
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l----------------~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa--d 503 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDL----------------REEILMLLARDKLHPLTPEREQLQVAFAKCAA--D 503 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHH----------------HHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH--H
Confidence 66666777666666666655432211111 122222333323333322 23333222221 1
Q ss_pred chhH-HHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcC-C----CChHHHHHHH---HHHHHcCCHHHHH
Q 038364 719 LQNG-KEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSA-N----KTLASWNCMI---MGFAIYGNGKEAI 789 (1076)
Q Consensus 719 ~~~a-~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~----~d~~s~n~li---~~~~~~g~~~~Al 789 (1076)
+.++ +..-..+.+ ........+...-.+.+.|+.++|.++|.-.. + +.....|+|+ ..-.+......|+
T Consensus 504 ~~e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~ 581 (625)
T KOG4422|consen 504 IKEAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAI 581 (625)
T ss_pred HHHHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHH
Confidence 1111 111222333 23344455666667777888888888777663 2 2223455443 4555667777788
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038364 790 LLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKY 826 (1076)
Q Consensus 790 ~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~ 826 (1076)
..++-|...+..--.-.-.-+...|.-...-.++..-
T Consensus 582 ~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls~ 618 (625)
T KOG4422|consen 582 EVLQLASAFNLPICEGLAQRIMEDFAINQEQKEALSN 618 (625)
T ss_pred HHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHhh
Confidence 8887776654332222333444444433333334433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-13 Score=167.36 Aligned_cols=351 Identities=12% Similarity=-0.022 Sum_probs=171.6
Q ss_pred HhCCChHHHHHHHHhcCCC------ChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhh
Q 038364 442 SRNNKLELATRVFDSMKDH------NLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQN 515 (1076)
Q Consensus 442 ~k~g~~~~A~~lf~~m~~~------d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~ 515 (1076)
.|..+++.-.-.|..-+++ +..-.-.++..+.+.|++++|+.+++........ +...+..++.+....|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHH
Confidence 3455666655556555432 1122334566777888888888888888777666 44455555566667888888
Q ss_pred HHHHHHHHHhcCCCCCcc-cHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC
Q 038364 516 VLTLLRGMQSLGFRPNGS-SVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMK 594 (1076)
Q Consensus 516 Al~l~~~m~~~gi~pd~~-t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~ 594 (1076)
|+..|+++.+.. |+.. .+..+...+...|+++.|...+..+++... .+..++..+...|...|+.++|...++.+.
T Consensus 95 A~~~l~~~l~~~--P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 95 VLQVVNKLLAVN--VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 888888877654 5432 233333344445555555555555444321 123344445555555555555555554332
Q ss_pred C--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHH
Q 038364 595 N--R-NIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTW 671 (1076)
Q Consensus 595 ~--~-d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty 671 (1076)
. | +...+..+ ..+.+.|++++|...++.+.+....++...+..+...+.+.|+.++|...|++..+.. ..+...+
T Consensus 172 ~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~ 249 (656)
T PRK15174 172 QEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALR 249 (656)
T ss_pred HhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 1 1 22222222 2244445555555555544433211222222333344444444455544444444321 1123334
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhc
Q 038364 672 TSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKS 751 (1076)
Q Consensus 672 ~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~ 751 (1076)
..+...|.+.|++++|. ..|...++.+++. .+.+...+..+..+|.+.
T Consensus 250 ~~Lg~~l~~~G~~~eA~-------------------------------~~A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~ 297 (656)
T PRK15174 250 RSLGLAYYQSGRSREAK-------------------------------LQAAEHWRHALQF-NSDNVRIVTLYADALIRT 297 (656)
T ss_pred HHHHHHHHHcCCchhhH-------------------------------HHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHC
Confidence 44444444444444300 0134444444442 112334445555555555
Q ss_pred CCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHH
Q 038364 752 GNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAIT-FTALLAACKNSGLVEEGWKYF 827 (1076)
Q Consensus 752 G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t-~~~ll~a~~~~g~~~eA~~~~ 827 (1076)
|++++|...+++..+ .+...+..+...|.+.|++++|+..|+++.+ ..|+... +..+..++...|+.++|.+.|
T Consensus 298 g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~--~~P~~~~~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 298 GQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAR--EKGVTSKWNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 555555555554432 1233444555555555555555555555554 2344332 222233455555666666555
Q ss_pred HHhhh
Q 038364 828 DSMST 832 (1076)
Q Consensus 828 ~~m~~ 832 (1076)
++..+
T Consensus 376 ~~al~ 380 (656)
T PRK15174 376 EHYIQ 380 (656)
T ss_pred HHHHH
Confidence 55543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.2e-13 Score=163.46 Aligned_cols=433 Identities=10% Similarity=-0.001 Sum_probs=270.8
Q ss_pred HHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHH---HHHHhcCc
Q 038364 471 SYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVL---QAVTELRL 547 (1076)
Q Consensus 471 ~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll---~a~~~~g~ 547 (1076)
...+.|+++.|++.|++..+....-....+ .++..+...|+.++|+..+++... |+...+..++ ..+...|+
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~----p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS----SMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHHcCC
Confidence 356889999999999988876544111233 777888888888888888888872 5444433333 34556677
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHh--cCChHHHHHHHHHHH
Q 038364 548 LKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCF--KGLFVNAKKMLNQME 625 (1076)
Q Consensus 548 ~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~--~g~~~~A~~lf~~M~ 625 (1076)
++.|.++++.+++..... ..++..++..|.+.++.++|.+.++++...+......+..+|.. .++..+|++.++++.
T Consensus 118 yd~Aiely~kaL~~dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 118 WDQALALWQSSLKKDPTN-PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHHhhCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 777777777777765543 44555667777777777777777777665332222123333333 444444666676666
Q ss_pred HcCCCCC-ccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChh
Q 038364 626 EEEIKPD-LVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNST 704 (1076)
Q Consensus 626 ~~g~~pd-~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~ 704 (1076)
+.. |+ ...+..+.....+.|-...|.++..+-.+. + +...+..+ . .+.|.+..+- +..|+.
T Consensus 197 ~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f--~~~~~~~l-~-------~~~~a~~vr~----a~~~~~- 258 (822)
T PRK14574 197 RLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-V--SAEHYRQL-E-------RDAAAEQVRM----AVLPTR- 258 (822)
T ss_pred HhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-c--CHHHHHHH-H-------HHHHHHHHhh----cccccc-
Confidence 553 33 333455556666666666666555443211 0 01111000 0 0111111111 111100
Q ss_pred hHHHHHHHHhcCCCc---hhHHHHHHHHHHc-CCCCC-hhh-HHH---HHHHHhhcCCHHHHHHHHHhcCCCC--hHHH-
Q 038364 705 TMSSLLQTCGGLGLL---QNGKEIHCLCLKN-GFIKD-AYV-ATG---LIDMYSKSGNLKSAREVFRKSANKT--LASW- 772 (1076)
Q Consensus 705 t~~~lL~a~~~~g~~---~~a~~i~~~~~~~-g~~~d-~~~-~~~---Li~~y~k~G~~~~A~~vf~~m~~~d--~~s~- 772 (1076)
.....+ +.+..-++.+... +-.|. ... ..+ .+-++.+.|+..++++.|+.+.... +..|
T Consensus 259 ---------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~ 329 (822)
T PRK14574 259 ---------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYA 329 (822)
T ss_pred ---------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHH
Confidence 001111 2233333333321 11121 111 222 3445677888999999999888543 3444
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC----------C
Q 038364 773 -NCMIMGFAIYGNGKEAILLFHELLETG-----FQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYN----------I 836 (1076)
Q Consensus 773 -n~li~~~~~~g~~~~Al~l~~~M~~~g-----~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g----------~ 836 (1076)
-+..++|...+++++|+.+|++..... ..++......|..|+...+++++|..+++.+.+... -
T Consensus 330 ~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 409 (822)
T PRK14574 330 RRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGK 409 (822)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCC
Confidence 567888999999999999999886532 122233356788889999999999999999876311 0
Q ss_pred CCC---cccHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHH
Q 038364 837 IPT---IEHYSCMVDLLGKAGYLDEAWDFIRTMP--FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNL 911 (1076)
Q Consensus 837 ~p~---~~~y~~li~~l~r~G~l~eA~~l~~~m~--~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~ 911 (1076)
.|+ ...+..++..+...|++.+|++.++++. -+-|..++..+...++..|+..+|+..++.+..++|++...+..
T Consensus 410 ~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~ 489 (822)
T PRK14574 410 EPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERA 489 (822)
T ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHH
Confidence 122 2234456777888999999999999882 34467788888999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 912 MMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 912 L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
++..+.+.|+|++|.++.+...+..
T Consensus 490 ~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 490 QAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 9999999999999999888776544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-12 Score=151.66 Aligned_cols=638 Identities=11% Similarity=0.067 Sum_probs=346.1
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhcCCCC
Q 038364 280 EVWGELHGKGVIFRSRILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSDLE 359 (1076)
Q Consensus 280 ~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~~~ 359 (1076)
.++..|...|+.||++||.+++..||..|+++.|- ++..|.-..+.-...+++.++......++.+.|. + +
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------e-p 81 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------E-P 81 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------C-C
Confidence 45667888899999999999999999999998888 8898887777777888899998888888887776 4 6
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHH-HH-------HCCCCCCHHHHHHHHHHHHccC-C------cHHHHHHHHHHHH
Q 038364 360 DDLLWNEIIMVKLRNEKWENAIKLFRE-MQ-------FSSAKAISRTIVKMLQACAKVG-A------FHEGKQIHGYVLK 424 (1076)
Q Consensus 360 d~~s~n~li~~~~~~g~~~eAl~lf~~-M~-------~~g~~p~~~t~~~ll~a~~~~g-~------~~~a~~i~~~~~~ 424 (1076)
-.-+|+.+..+|.+.|+... ++.-++ |. ..|+..-..-|-..+.+|-..- + ..--+.+.+..++
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 66789999999999998765 222222 21 2233222222222222221110 0 0011122333334
Q ss_pred hCCCCCHHHHHHHHHHHHh-----CCChHHHHHHHHhcC-CCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChh
Q 038364 425 SALESNLSVCNCLISMYSR-----NNKLELATRVFDSMK-DHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDII 498 (1076)
Q Consensus 425 ~g~~~d~~v~n~Li~~y~k-----~g~~~~A~~lf~~m~-~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ 498 (1076)
.+....+..++.-...+.+ ...+++-...-.... .++..++.+.+..-..+|+.+.|..++.+|.+.|+..+..
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 3311111111111111111 112222222222223 4889999999999999999999999999999999998888
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 038364 499 TWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYV 578 (1076)
Q Consensus 499 ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~ 578 (1076)
-|..|+-+ .+....+..+++.|++.|+.|+..|+..-+-.|.+.|....+..... ........++.++.+...
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq----~~hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQ----LAHGFTAAVRSAACRGLL 313 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccc----hhhhhhHHHHHHHhcccH
Confidence 88888777 88999999999999999999999999988888777554333222110 000001111122221110
Q ss_pred hCCCHH--HHHHHHhhcCC-------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCC-Cccchhhhhhhhhhc
Q 038364 579 KNDCLQ--NAQEVFDNMKN-------RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEE--EIKP-DLVSWNSLVSGYSIW 646 (1076)
Q Consensus 579 k~g~~~--~A~~lf~~m~~-------~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~--g~~p-d~~t~~~Li~~y~k~ 646 (1076)
....++ .+.-+....++ ....+|...+. ....|.-++..++...|..- .+.+ ++..|..++.-|.+.
T Consensus 314 a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr 392 (1088)
T KOG4318|consen 314 ANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRR 392 (1088)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHH
Confidence 001111 01111111111 11122322221 11134444444433333211 0011 111122222211110
Q ss_pred ----------------------C------------ChhHHHHHHHHhHhcCCCCch-----------HHHHHHHHHHhcC
Q 038364 647 ----------------------G------------QSKEALVIIHHMKNSGIYPNV-----------VTWTSLISGSLQN 681 (1076)
Q Consensus 647 ----------------------g------------~~~~A~~lf~~m~~~gi~pd~-----------~ty~~LI~~~~~~ 681 (1076)
. +...+.+-+..+......... ..-+.++-.+++.
T Consensus 393 ~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se 472 (1088)
T KOG4318|consen 393 IERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSE 472 (1088)
T ss_pred HHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHH
Confidence 1 111111111111100000011 1123344444444
Q ss_pred CChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHc--CCCCChhhHHHHHHHHhhcCCHHHHHH
Q 038364 682 ENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKN--GFIKDAYVATGLIDMYSKSGNLKSARE 759 (1076)
Q Consensus 682 g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~--g~~~d~~~~~~Li~~y~k~G~~~~A~~ 759 (1076)
-+..+++..-+.....-+ | ..|..++.-|..+..++.|..+.++.... .+..|..-+..+.+...+.+...++.+
T Consensus 473 ~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~t 549 (1088)
T KOG4318|consen 473 YNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLST 549 (1088)
T ss_pred HHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHH
Confidence 444555443333322111 1 45777888888888888888777766543 233566677788888888888888888
Q ss_pred HHHhcCCC----C--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC------------------------------CCC
Q 038364 760 VFRKSANK----T--LASWNCMIMGFAIYGNGKEAILLFHELLETGF------------------------------QPD 803 (1076)
Q Consensus 760 vf~~m~~~----d--~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~------------------------------~Pd 803 (1076)
+..++.+. + ..+.--|.++-+..|+.+.-.++++-....|+ +|.
T Consensus 550 iL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~ 629 (1088)
T KOG4318|consen 550 ILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPY 629 (1088)
T ss_pred HHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCC
Confidence 88877642 1 12233345555666666655555554443332 222
Q ss_pred HHHHHHHHHH---------------------HHhcCCHHHHHHHHHHh-----------hhcCCCCC---------Cccc
Q 038364 804 AITFTALLAA---------------------CKNSGLVEEGWKYFDSM-----------STDYNIIP---------TIEH 842 (1076)
Q Consensus 804 ~~t~~~ll~a---------------------~~~~g~~~eA~~~~~~m-----------~~~~g~~p---------~~~~ 842 (1076)
......+.+. |.+.|++.++.++.+-= .....+.| +..+
T Consensus 630 P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~ 709 (1088)
T KOG4318|consen 630 PKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGK 709 (1088)
T ss_pred hHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHH
Confidence 2222222222 22233333333322100 00000111 1122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CchHHHHHHHHHhcCCCCC---chhHHHHHHHH
Q 038364 843 YSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHG---HLEYAEIASRRLFKLEPCN---SANYNLMMNLL 916 (1076)
Q Consensus 843 y~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g---~~e~A~~~~~~l~~l~P~~---~~~y~~L~~~y 916 (1076)
..-|+..|.+.|+++.|..++.++++.|+..+..-|...++++. ++-++...-+++.++.|.. ...|.--+-+.
T Consensus 710 ~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a 789 (1088)
T KOG4318|consen 710 NDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFA 789 (1088)
T ss_pred HHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHH
Confidence 33467789999999999999999998899988888888887664 4555555666666655443 33344444445
Q ss_pred HHcCChHHHHHHHHHHHhCCCc
Q 038364 917 AMSNRWEDVERLRHSMDEVGVK 938 (1076)
Q Consensus 917 ~~~G~~~eA~~~~~~m~~~g~~ 938 (1076)
.+....+-|.+.+.+.++....
T Consensus 790 ~q~~qkkaAkk~f~r~eeq~~v 811 (1088)
T KOG4318|consen 790 TQTEQKKAAKKCFERLEEQLTV 811 (1088)
T ss_pred hhHHHHHHHHHHHHHHHHccCC
Confidence 5555566889999999887543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-13 Score=167.02 Aligned_cols=325 Identities=11% Similarity=0.004 Sum_probs=227.2
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCCh
Q 038364 573 LMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQS 649 (1076)
Q Consensus 573 Li~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~ 649 (1076)
.+....+.|+.++|..+++.... .+...+..+..+....|++++|++.|+++.+.. +.+...+..+...+...|++
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence 34456677888888888777653 345556666677777888888888888887653 12344566777778888888
Q ss_pred hHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHH
Q 038364 650 KEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLC 729 (1076)
Q Consensus 650 ~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~ 729 (1076)
++|...|++..+.. +.+...|..+...+.+.|++++|...++++... .|+.......+..+...|++++|...+..+
T Consensus 127 ~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 127 ATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE--VPPRGDMIATCLSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888887641 224567777888888888888888888877653 233222222233466778888888888877
Q ss_pred HHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHH----HHHHHHHHHHCCCCC
Q 038364 730 LKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKE----AILLFHELLETGFQP 802 (1076)
Q Consensus 730 ~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~----Al~l~~~M~~~g~~P 802 (1076)
++..-.++......+...|.+.|++++|.+.|++..+ .+...+..+...|...|+.++ |+..|++..+ ..|
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P 281 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNS 281 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCC
Confidence 6653223344445566777888888888888877653 345677778888888888875 7888888877 456
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHH-HH
Q 038364 803 DA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTMP-FKPDATIWG-AL 878 (1076)
Q Consensus 803 d~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m~-~~pd~~~~~-~L 878 (1076)
+. ..+..+...+...|++++|...+++..+. .|+ ...+..+...|.+.|++++|.+.++++. ..|+...+. .+
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~ 358 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYA 358 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 54 46667777788888888888888887653 344 4456667788888888888888887763 456554433 34
Q ss_pred HHHHHHcCCchHHHHHHHHHhcCCCCCc
Q 038364 879 LGSCRIHGHLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 879 l~a~~~~g~~e~A~~~~~~l~~l~P~~~ 906 (1076)
..++...|+.++|...++++++.+|++.
T Consensus 359 a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 5667788888888888888888888753
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-09 Score=123.67 Aligned_cols=610 Identities=12% Similarity=0.074 Sum_probs=450.1
Q ss_pred cCChhhHHHHHHHHHHhCC-CCChHHHHHHHHHHhcCCChHHHHHHHhh---cCCCCChhhHHHHHHHHHhCCChhHHHH
Q 038364 307 LMAFWLGVEVHASLIKRGF-DFDVHLKCALMNFYGKCRDVESANKLFSE---VSDLEDDLLWNEIIMVKLRNEKWENAIK 382 (1076)
Q Consensus 307 ~~~~~~a~~~~~~~~~~g~-~~d~~~~~~Li~~y~k~g~~~~A~~vf~~---m~~~~d~~s~n~li~~~~~~g~~~eAl~ 382 (1076)
.+++..++.++..+.+... .|...+.++-+. -..|.+..|+.+..+ +.. ++.-.|---| +-...+.|..
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLE--EvagKl~~Ar~~I~~GCe~cp-rSeDvWLeai----RLhp~d~aK~ 336 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLE--EVAGKLSVARNLIMKGCEECP-RSEDVWLEAI----RLHPPDVAKT 336 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHH--HHhhHHHHHHHHHHHHHhhCC-chHHHHHHHH----hcCChHHHHH
Confidence 3456666666666666553 244444444332 233555555555431 112 2333342221 2233344444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCC---
Q 038364 383 LFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKD--- 459 (1076)
Q Consensus 383 lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~--- 459 (1076)
+.....+. -|+.+. .-+.|---..+...=..++...++. +..++..|-+.+. ..+.++|+.++.+..+
T Consensus 337 vvA~Avr~--~P~Sv~--lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaAVe----lE~~~darilL~rAveccp 407 (913)
T KOG0495|consen 337 VVANAVRF--LPTSVR--LWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWKAAVE----LEEPEDARILLERAVECCP 407 (913)
T ss_pred HHHHHHHh--CCCChh--hhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHHHh----ccChHHHHHHHHHHHHhcc
Confidence 44433322 233222 1222211111222223344444433 2445666666554 4566778888877643
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHH----HHhcCCCCCcccH
Q 038364 460 HNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRG----MQSLGFRPNGSSV 535 (1076)
Q Consensus 460 ~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~----m~~~gi~pd~~t~ 535 (1076)
.++..|. +|++..-++.|..+++..++. +.-|...|.+-...=-.+|+.+...+++++ +...|+..|...|
T Consensus 408 ~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqW 482 (913)
T KOG0495|consen 408 QSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQW 482 (913)
T ss_pred chHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHH
Confidence 3344444 566777788999999988875 444888888887777888999988888765 4567888888888
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHh
Q 038364 536 SVVLQAVTELRLLKYGRESHGYILRNGLDYD--LYVGTSLMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCF 610 (1076)
Q Consensus 536 ~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d--~~v~~aLi~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~ 610 (1076)
..=..+|-..|..-.+..|...++..|++.. ..+|+.--+.+.+.+.++-|+.+|....+ .+...|...+..--.
T Consensus 483 l~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~ 562 (913)
T KOG0495|consen 483 LKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKS 562 (913)
T ss_pred HHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHh
Confidence 8888899999999999999999998887643 45788888889999999999999987765 567889998888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHH
Q 038364 611 KGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKF 690 (1076)
Q Consensus 611 ~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l 690 (1076)
+|..++-..+|.+....- +-..+-|-....-+-..|++..|..++.+..+.... +...|-.-+.....+..+++|..+
T Consensus 563 hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred cCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHH
Confidence 999999999999998763 234455555566677789999999999998886333 678899999999999999999999
Q ss_pred HHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC--C-
Q 038364 691 FIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN--K- 767 (1076)
Q Consensus 691 ~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~- 767 (1076)
|.+... ..|+...|..-+..-...++.++|.++++..++. ++.-...|..+...|-+.++++.|++.|....+ |
T Consensus 641 lakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~ 717 (913)
T KOG0495|consen 641 LAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN 717 (913)
T ss_pred HHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC
Confidence 999875 5677777777666667788999999999998885 555567888999999999999999999988765 3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHH
Q 038364 768 TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMV 847 (1076)
Q Consensus 768 d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li 847 (1076)
.+..|-.+...--+.|..-+|..+|++.+..+ .-|...|...+..-.+.|+.++|..+..+..++ ++-+...|.--|
T Consensus 718 ~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI 794 (913)
T KOG0495|consen 718 SIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAI 794 (913)
T ss_pred CchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHH
Confidence 45689888888889999999999999998753 335568999999999999999999999888874 445567888899
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHH
Q 038364 848 DLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVER 927 (1076)
Q Consensus 848 ~~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~ 927 (1076)
.+..+.++-..+.+.+++.. -|+.+..++...+.....++.|...|+++++++|++..++..+...+.+.|.-++-.+
T Consensus 795 ~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~ke 872 (913)
T KOG0495|consen 795 WLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKE 872 (913)
T ss_pred HhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHH
Confidence 99999999888888888765 4556666777778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccCcceEEEEEC
Q 038364 928 LRHSMDEVGVKSVLVWSWIQID 949 (1076)
Q Consensus 928 ~~~~m~~~g~~~~~~~swi~~~ 949 (1076)
++++-.... +..|..|+.+.
T Consensus 873 v~~~c~~~E--P~hG~~W~avS 892 (913)
T KOG0495|consen 873 VLKKCETAE--PTHGELWQAVS 892 (913)
T ss_pred HHHHHhccC--CCCCcHHHHHh
Confidence 998875543 23477786543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-11 Score=150.96 Aligned_cols=445 Identities=13% Similarity=0.047 Sum_probs=278.6
Q ss_pred HHhcCCChHHHHHHHhhcCCCCChh---hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHH
Q 038364 338 FYGKCRDVESANKLFSEVSDLEDDL---LWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHE 414 (1076)
Q Consensus 338 ~y~k~g~~~~A~~vf~~m~~~~d~~---s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~ 414 (1076)
...+.|+++.|...|++... .+.. ....++..+...|+.++|+..+++... ........+..+...+...|+++.
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~-~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESK-AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHh-hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHH
Confidence 45677888888888887764 3222 233777778888888888888888761 112222333333456777788888
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHh--CCChHHHHHHHHHHHhCC
Q 038364 415 GKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTG--LGYVDVAWSLFNKMNSSR 492 (1076)
Q Consensus 415 a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~--~g~~~~A~~lf~~M~~~g 492 (1076)
|.+++..+++.... +..++..|+..|...++.++|++.++++...+......+..+|.. .++..+|++.++++.+..
T Consensus 121 Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 121 ALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 88888888887754 356667888889999999999999999865444322224444444 556656999999999886
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHH
Q 038364 493 IQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTS 572 (1076)
Q Consensus 493 ~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~a 572 (1076)
+. +...+..+...+.+.|-...|+++.++- |+-++-..... .-.......++.+..++..-
T Consensus 200 P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~---------l~~~~~a~~vr~a~~~~~~~--- 260 (822)
T PRK14574 200 PT-SEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQ---------LERDAAAEQVRMAVLPTRSE--- 260 (822)
T ss_pred CC-CHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHH---------HHHHHHHHHHhhcccccccc---
Confidence 55 7778888889999999999998777663 55443322111 00111122222222111100
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCC-----CCH-h----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhh
Q 038364 573 LMDMYVKNDCLQNAQEVFDNMKN-----RNI-V----AWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSG 642 (1076)
Q Consensus 573 Li~~y~k~g~~~~A~~lf~~m~~-----~d~-~----~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~ 642 (1076)
-. +.--.+.|..-++.+.. |.. . ..--.+-++...|++.++++.|+.|...|.+....+--++.++
T Consensus 261 -~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ada 336 (822)
T PRK14574 261 -TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASA 336 (822)
T ss_pred -hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence 00 00012333333333221 211 1 1223566788899999999999999988866555577889999
Q ss_pred hhhcCChhHHHHHHHHhHhcC-----CCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhh-HHHHHHHHhcC
Q 038364 643 YSIWGQSKEALVIIHHMKNSG-----IYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTT-MSSLLQTCGGL 716 (1076)
Q Consensus 643 y~k~g~~~~A~~lf~~m~~~g-----i~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t-~~~lL~a~~~~ 716 (1076)
|...+++++|..+|+++.... ..++......|.-+|...+++++|..+++++.+. .|-.+. |. ..
T Consensus 337 yl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~~~~~~~-------~~ 407 (822)
T PRK14574 337 YIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPYQVGVYG-------LP 407 (822)
T ss_pred HHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcEEeccC-------CC
Confidence 999999999999999986532 2334444678899999999999999999999763 231000 00 00
Q ss_pred CCchhHHHHHHHHHHcCCCCC-hhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHH
Q 038364 717 GLLQNGKEIHCLCLKNGFIKD-AYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLF 792 (1076)
Q Consensus 717 g~~~~a~~i~~~~~~~g~~~d-~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~ 792 (1076)
. ..-.|| ......++..+...|++.+|++.++++.. .|...+..+...+...|++.+|++.+
T Consensus 408 ~--------------~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~ 473 (822)
T PRK14574 408 G--------------KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQEL 473 (822)
T ss_pred C--------------CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 0 001111 12233345556666777777777766653 25556666667777777777777777
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 038364 793 HELLETGFQPDAI-TFTALLAACKNSGLVEEGWKYFDSMSTD 833 (1076)
Q Consensus 793 ~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~ 833 (1076)
+.... +.|+.. +......+....+++++|.++.+...+.
T Consensus 474 k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 474 KAVES--LAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 55544 355543 4445555566667777777766666543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-11 Score=130.84 Aligned_cols=358 Identities=13% Similarity=0.108 Sum_probs=200.5
Q ss_pred CCCcccHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChHHHHH
Q 038364 255 SRSYADWSSFLEDYESFGGEVQELLEVWGELHGKGVIFRSRILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCA 334 (1076)
Q Consensus 255 ~~~~~~wn~li~~~~~~g~~~~~al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~ 334 (1076)
..+..++..||.|+++.... +.|.++|.+-++..++.+..+|+.+|.+-+ +..++++...|+...+.||.++.|+
T Consensus 204 PKT~et~s~mI~Gl~K~~~~-ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSL-ERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred CCCchhHHHHHHHHHHHHhH-HHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHH
Confidence 34556788899999888888 889999988888888888889988887654 4455888888888888888888888
Q ss_pred HHHHHhcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHH
Q 038364 335 LMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHE 414 (1076)
Q Consensus 335 Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~ 414 (1076)
|+...++.|++++|++.|- +++.+|.+-|+.|.-.+|..+|..+++.++...
T Consensus 279 lL~c~akfg~F~~ar~aal----------------------------qil~EmKeiGVePsLsSyh~iik~f~re~dp~k 330 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAAL----------------------------QILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK 330 (625)
T ss_pred HHHHHHHhcchHHHHHHHH----------------------------HHHHHHHHhCCCcchhhHHHHHHHhcccCCchh
Confidence 8888888888888776543 334445555555555555555555554444322
Q ss_pred -HHHHHHHHHH----hCCC----CCHHHHHHHHHHHHhCCChHHHHHHHHhcCCC-----------ChhHHHHHHHHHHh
Q 038364 415 -GKQIHGYVLK----SALE----SNLSVCNCLISMYSRNNKLELATRVFDSMKDH-----------NLSSWNSMISSYTG 474 (1076)
Q Consensus 415 -a~~i~~~~~~----~g~~----~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~-----------d~~s~n~lI~~~~~ 474 (1076)
+..+...+.. .-+. .|...+..-++.+.+..+.+.|.++-.-.... ..+-|.-+....++
T Consensus 331 ~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq 410 (625)
T KOG4422|consen 331 VASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQ 410 (625)
T ss_pred hhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHH
Confidence 2222222211 1111 12223333344444444444444443322111 11234445556666
Q ss_pred CCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHH
Q 038364 475 LGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRES 554 (1076)
Q Consensus 475 ~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i 554 (1076)
....+.-...|+.|.-.-+-|+..+...++.+...+|.++-.-+++.+|...|-. +.. +..+++
T Consensus 411 ~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght-----~r~-----------~l~eei 474 (625)
T KOG4422|consen 411 MESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT-----FRS-----------DLREEI 474 (625)
T ss_pred HHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh-----hhH-----------HHHHHH
Confidence 6677777777777777766777777777777777777777777777777665522 211 223344
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhCC-CHHHH-HHHHhhcCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-C
Q 038364 555 HGYILRNGLDYDLYVGTSLMDMYVKND-CLQNA-QEVFDNMKN--RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEE-I 629 (1076)
Q Consensus 555 ~~~~~~~g~~~d~~v~~aLi~~y~k~g-~~~~A-~~lf~~m~~--~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g-~ 629 (1076)
...+.+..+.|+......|-....||- ++-++ +..-.+|.. -.....|.+.-.+.+.|+.++|.++|.-+.+.+ -
T Consensus 475 l~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ 554 (625)
T KOG4422|consen 475 LMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNK 554 (625)
T ss_pred HHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCc
Confidence 444444444444333333333333321 01111 111111221 133445555556666666666666666664433 1
Q ss_pred CCCccchh---hhhhhhhhcCChhHHHHHHHHhHh
Q 038364 630 KPDLVSWN---SLVSGYSIWGQSKEALVIIHHMKN 661 (1076)
Q Consensus 630 ~pd~~t~~---~Li~~y~k~g~~~~A~~lf~~m~~ 661 (1076)
.|-....| .+++.-.+.++...|..+++-|..
T Consensus 555 ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 555 IPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 22223333 233333444555555555555543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-09 Score=128.10 Aligned_cols=589 Identities=12% Similarity=0.066 Sum_probs=393.8
Q ss_pred HhcCCChHHHHHHHhhcCC--CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHH
Q 038364 339 YGKCRDVESANKLFSEVSD--LEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGK 416 (1076)
Q Consensus 339 y~k~g~~~~A~~vf~~m~~--~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 416 (1076)
+++ |++++|.+++.++.. .++...|-+|-..|-+.|+.++++..+-...-.. +-|..-|..+-.-..+.|++++|.
T Consensus 150 far-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 150 FAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHH
Confidence 444 999999999998754 1467889999999999999999988765443222 335667888888888999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCCh-h-------HHHHHHHHHHhCCChHHHHHHHHHH
Q 038364 417 QIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNL-S-------SWNSMISSYTGLGYVDVAWSLFNKM 488 (1076)
Q Consensus 417 ~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~-~-------s~n~lI~~~~~~g~~~~A~~lf~~M 488 (1076)
-.+..+++.... +....-.-..+|-+.|+...|..-|.++-..+. + +--.++..|...+..+.|++.+...
T Consensus 228 ~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999988754 344444457789999999999988887743222 1 1223456677778889999999887
Q ss_pred HhC-CCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC----------------------CcccHH----HHHHH
Q 038364 489 NSS-RIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRP----------------------NGSSVS----VVLQA 541 (1076)
Q Consensus 489 ~~~-g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~p----------------------d~~t~~----~ll~a 541 (1076)
... +-.-+...++.++..|.+...++.|......+.....++ +...|. -+.-+
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 762 222366788999999999999999999999888722222 222221 12223
Q ss_pred HHhcCchHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC----CCHhHHHHHHHHHHhcCChH
Q 038364 542 VTELRLLKYGRESHGYILRNG--LDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN----RNIVAWNSLISGYCFKGLFV 615 (1076)
Q Consensus 542 ~~~~g~~~~a~~i~~~~~~~g--~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~----~d~~~~n~lI~~~~~~g~~~ 615 (1076)
..+....+....+.....+.. +.-++..+.-+.++|...|++.+|.++|..+.. .+...|--+...|...|..+
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 345666677777777777776 445677889999999999999999999999876 46789999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCc-cchhhhhhhhhhcCChhHHHHHHHHhHh--------cCCCCchHHHHHHHHHHhcCCChhH
Q 038364 616 NAKKMLNQMEEEEIKPDL-VSWNSLVSGYSIWGQSKEALVIIHHMKN--------SGIYPNVVTWTSLISGSLQNENYRE 686 (1076)
Q Consensus 616 ~A~~lf~~M~~~g~~pd~-~t~~~Li~~y~k~g~~~~A~~lf~~m~~--------~gi~pd~~ty~~LI~~~~~~g~~~e 686 (1076)
+|.+.|+..... .|+. ..-..|-+.|-+.|+.++|.+.++.|.. .+..|+...--...+.|.+.|+.++
T Consensus 467 ~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 467 EAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 999999999865 3443 3345667778899999999999999652 2344555555556677888998887
Q ss_pred HHHHHHHHhhcC----------------------CCCChhhHHHHHHHHhcCCCchhHHHH------HHHHHHcCCCCCh
Q 038364 687 SLKFFIQMQQED----------------------IKPNSTTMSSLLQTCGGLGLLQNGKEI------HCLCLKNGFIKDA 738 (1076)
Q Consensus 687 Al~l~~~m~~~g----------------------i~pd~~t~~~lL~a~~~~g~~~~a~~i------~~~~~~~g~~~d~ 738 (1076)
=+..-.+|+... ..-...+...+..+-.+.++....+.- .....-.|+..+.
T Consensus 545 fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsidd 624 (895)
T KOG2076|consen 545 FINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDD 624 (895)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHH
Confidence 666555554321 111112222222232233221111111 1111112333222
Q ss_pred --hhHHHHHHHHhhcCCHHHHHHHHHhcCCCCh-----H----HHHHHHHHHHHcCCHHHHHHHHHHHHHC-CC--CCCH
Q 038364 739 --YVATGLIDMYSKSGNLKSAREVFRKSANKTL-----A----SWNCMIMGFAIYGNGKEAILLFHELLET-GF--QPDA 804 (1076)
Q Consensus 739 --~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~-----~----s~n~li~~~~~~g~~~~Al~l~~~M~~~-g~--~Pd~ 804 (1076)
..+.-++..+++.++.++|..+...+..... . .-+.++.+....+++.+|.+.++.|... +. .|..
T Consensus 625 wfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q 704 (895)
T KOG2076|consen 625 WFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQ 704 (895)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHH
Confidence 3456688899999999999999887765322 1 2356778888999999999999999864 11 3333
Q ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHH--HHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 038364 805 I-TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSC--MVDLLGKAGYLDEAWDFIRTM-PFKPDATIWGALLG 880 (1076)
Q Consensus 805 ~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~--li~~l~r~G~l~eA~~l~~~m-~~~pd~~~~~~Ll~ 880 (1076)
. .|+..++.....|+-.-=.+++.... ...|+-.++-+ -...+..++.+..|+..+-+. ...||....+-+++
T Consensus 705 ~~l~n~~~s~~~~~~q~v~~~R~~~~~~---~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lg 781 (895)
T KOG2076|consen 705 LNLWNLDFSYFSKYGQRVCYLRLIMRLL---VKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLG 781 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 2 35545555555544332233332222 22233222222 234456788888888765443 23455333333332
Q ss_pred H-H----------HHcCCchHHHHHHHHHhcCCCC--CchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 881 S-C----------RIHGHLEYAEIASRRLFKLEPC--NSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 881 a-~----------~~~g~~e~A~~~~~~l~~l~P~--~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
. + .+|-.+-+|..+..+..++.-. ..++.+.++.+|-..|-..=|...+++..+.
T Consensus 782 lafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 782 LAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCC
Confidence 2 1 2344556677777777766433 5688999999999999999999999998654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.5e-09 Score=123.47 Aligned_cols=626 Identities=12% Similarity=0.087 Sum_probs=298.5
Q ss_pred CCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCC-CChHHHHHHHHHHhcCCChHHHHH
Q 038364 272 GGEVQELLEVWGELHGKGVIFRSRILTIILKLCTKLMAFWLGVEVHASLIKRGFD-FDVHLKCALMNFYGKCRDVESANK 350 (1076)
Q Consensus 272 g~~~~~al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~d~~~~~~Li~~y~k~g~~~~A~~ 350 (1076)
|+. ++|..++.+..+... -+...|..|-..+-..|+.+.+... .++...+. .|...|-.+-+...+.|.++.|+-
T Consensus 153 g~~-eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~--~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 153 GDL-EEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNF--WLLAAHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred CCH-HHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHH--HHHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 566 666666666655432 2334555555555566655544332 22222222 344566666666666666666666
Q ss_pred HHhhcCCCCChhhHHH---HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHccCCcHHHHHHHHHHH
Q 038364 351 LFSEVSDLEDDLLWNE---IIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVK----MLQACAKVGAFHEGKQIHGYVL 423 (1076)
Q Consensus 351 vf~~m~~~~d~~s~n~---li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~----ll~a~~~~g~~~~a~~i~~~~~ 423 (1076)
.|.+..+ .+..-|-. =+.-|-+.|+...|++.|.+|.+...+.|-.-+.. +++.+...++-+.|.+.++..+
T Consensus 229 cy~rAI~-~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQ-ANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHh-cCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6665443 22222222 23345556666666666666655432112122222 2333334444455555544444
Q ss_pred HhC-CCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCC----CChhHH----------------------H----HHHHHH
Q 038364 424 KSA-LESNLSVCNCLISMYSRNNKLELATRVFDSMKD----HNLSSW----------------------N----SMISSY 472 (1076)
Q Consensus 424 ~~g-~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~----------------------n----~lI~~~ 472 (1076)
..+ -..+...+|.++.+|.+....+.|......+.. +|..-| + -+.-++
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 322 122333455555555555555555554444422 222211 0 011112
Q ss_pred HhCCChHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHH
Q 038364 473 TGLGYVDVAWSLFNKMNSSR--IQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKY 550 (1076)
Q Consensus 473 ~~~g~~~~A~~lf~~M~~~g--~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~ 550 (1076)
......+....+.....+.. +.-++..|.-+..+|.+.|++++|+++|..+.....--+...|..+-..+-..+..++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 22222222222222222222 2223344444455555555555555555555444322233344444444444555555
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038364 551 GRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIK 630 (1076)
Q Consensus 551 a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~ 630 (1076)
|.+.++.++..... +..+--+|-..|-+.|+.++|.+.++.|..+|... ....+..
T Consensus 468 A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~-----------------------~e~~a~~ 523 (895)
T KOG2076|consen 468 AIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRN-----------------------AEACAWE 523 (895)
T ss_pred HHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc-----------------------hhhcccc
Confidence 55555544443221 22233334444445555555555555444333100 0000111
Q ss_pred CCccchhhhhhhhhhcCChhHHHHHHHHhHhc----------------------CCCCchHHHHHHHHHHhcCCChhHHH
Q 038364 631 PDLVSWNSLVSGYSIWGQSKEALVIIHHMKNS----------------------GIYPNVVTWTSLISGSLQNENYRESL 688 (1076)
Q Consensus 631 pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~----------------------gi~pd~~ty~~LI~~~~~~g~~~eAl 688 (1076)
|+....--..+.+.+.|+.++=...-..|... +......+--.++.+-.+.++.....
T Consensus 524 ~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 603 (895)
T KOG2076|consen 524 PERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVME 603 (895)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhh
Confidence 11111122223333444433322222222210 01111222222333333333211111
Q ss_pred H------HHHHHhhcCCCCCh--hhHHHHHHHHhcCCCchhHHHHHHHHHHcCC-CCCh----hhHHHHHHHHhhcCCHH
Q 038364 689 K------FFIQMQQEDIKPNS--TTMSSLLQTCGGLGLLQNGKEIHCLCLKNGF-IKDA----YVATGLIDMYSKSGNLK 755 (1076)
Q Consensus 689 ~------l~~~m~~~gi~pd~--~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~-~~d~----~~~~~Li~~y~k~G~~~ 755 (1076)
+ .+.--...|+.-+. ..+.-++.+.++.+..++|..+...+.+... ..+. ..-...+.+-...+++.
T Consensus 604 ~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~ 683 (895)
T KOG2076|consen 604 KALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPG 683 (895)
T ss_pred hcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHH
Confidence 1 11111112222222 2344556677788888888888776665421 1222 23345566666778888
Q ss_pred HHHHHHHhcCCC-----Ch---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHH
Q 038364 756 SAREVFRKSANK-----TL---ASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAA--CKNSGLVEEGWK 825 (1076)
Q Consensus 756 ~A~~vf~~m~~~-----d~---~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a--~~~~g~~~eA~~ 825 (1076)
.|...++.|... ++ ..||...+...++++-.--..++..... ..|+......++.+ ....+.+.-|.+
T Consensus 684 ~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~ 761 (895)
T KOG2076|consen 684 DAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQ 761 (895)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHH
Confidence 888888877754 43 4788777777777765555555555443 23333222222222 334566777777
Q ss_pred HHHHhhhcCCCCCCcccH-HHHHHHHH----------hcCCHHHHHHHHHhCC-C-CC--CHHHHHHHHHHHHHcCCchH
Q 038364 826 YFDSMSTDYNIIPTIEHY-SCMVDLLG----------KAGYLDEAWDFIRTMP-F-KP--DATIWGALLGSCRIHGHLEY 890 (1076)
Q Consensus 826 ~~~~m~~~~g~~p~~~~y-~~li~~l~----------r~G~l~eA~~l~~~m~-~-~p--d~~~~~~Ll~a~~~~g~~e~ 890 (1076)
++-.... ..|+...+ -||.-++. |.-.+-.+..+.++.. . .+ ...++..+..+|..-|-+..
T Consensus 762 ~y~ra~~---~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~L 838 (895)
T KOG2076|consen 762 EYMRAFR---QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHL 838 (895)
T ss_pred HHHHHHH---hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHH
Confidence 6655543 34663333 34443332 2223444555554431 1 12 34577789999999999999
Q ss_pred HHHHHHHHhcCCCCCc------------hhHHHHHHHHHHcCChHHHHHHHHH
Q 038364 891 AEIASRRLFKLEPCNS------------ANYNLMMNLLAMSNRWEDVERLRHS 931 (1076)
Q Consensus 891 A~~~~~~l~~l~P~~~------------~~y~~L~~~y~~~G~~~eA~~~~~~ 931 (1076)
|...+++++++.|.+. .+-..|.-+|-..|+..-|.++.++
T Consensus 839 A~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 839 AVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 9999999999976431 3345678899999999999988765
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.4e-08 Score=110.18 Aligned_cols=611 Identities=13% Similarity=0.099 Sum_probs=406.8
Q ss_pred cCChhhHHHHhhhcCC---CCcccHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhhHHHH
Q 038364 240 FGDFTSAAKAFFLYFS---RSYADWSSFLEDYESFGGEVQELLEVWGELHGKGVIFRSRILTIILKLCTKLMAFWLGVEV 316 (1076)
Q Consensus 240 ~g~~~~A~~~f~~~~~---~~~~~wn~li~~~~~~g~~~~~al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 316 (1076)
.+++..|+.++....+ .++-.|-+-.+.--..|.. ..|..+ ...|+.-...+=-.-|.++ ++...+.|+.+
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl-~~Ar~~----I~~GCe~cprSeDvWLeai-RLhp~d~aK~v 337 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKL-SVARNL----IMKGCEECPRSEDVWLEAI-RLHPPDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHH-HHHHHH----HHHHHhhCCchHHHHHHHH-hcCChHHHHHH
Confidence 3466778888877643 4455675544444455555 444333 3334322112222233333 34455566677
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHhcC-CChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 038364 317 HASLIKRGFDFDVHLKCALMNFYGKC-RDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAI 395 (1076)
Q Consensus 317 ~~~~~~~g~~~d~~~~~~Li~~y~k~-g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~ 395 (1076)
.+..++.-. .++.+|-.-.+.=... ....--++.++.+|. ++..|-+.+ .-...++|.-++.+..+- -|.
T Consensus 338 vA~Avr~~P-~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~--sv~LWKaAV----elE~~~darilL~rAvec--cp~ 408 (913)
T KOG0495|consen 338 VANAVRFLP-TSVRLWLKAADLESDTKNKKRVLRKALEHIPR--SVRLWKAAV----ELEEPEDARILLERAVEC--CPQ 408 (913)
T ss_pred HHHHHHhCC-CChhhhhhHHhhhhHHHHHHHHHHHHHHhCCc--hHHHHHHHH----hccChHHHHHHHHHHHHh--ccc
Confidence 666665431 1222221111110000 001112233334442 455554333 334445555555554431 111
Q ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhC
Q 038364 396 SRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGL 475 (1076)
Q Consensus 396 ~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~ 475 (1076)
. .-|.-|+++...++.|+.++....+. +. .+...|-+--.-=-++
T Consensus 409 s---~dLwlAlarLetYenAkkvLNkaRe~-ip-------------------------------td~~IWitaa~LEE~n 453 (913)
T KOG0495|consen 409 S---MDLWLALARLETYENAKKVLNKAREI-IP-------------------------------TDREIWITAAKLEEAN 453 (913)
T ss_pred h---HHHHHHHHHHHHHHHHHHHHHHHHhh-CC-------------------------------CChhHHHHHHHHHHhc
Confidence 1 12233344444444444444443322 22 2334444433333445
Q ss_pred CChHHHHHHHHH----HHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC--cccHHHHHHHHHhcCchH
Q 038364 476 GYVDVAWSLFNK----MNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPN--GSSVSVVLQAVTELRLLK 549 (1076)
Q Consensus 476 g~~~~A~~lf~~----M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd--~~t~~~ll~a~~~~g~~~ 549 (1076)
|..+...++.++ +...|+..+...|-.=...+-..|..--+..+......-|+.-. ..|+...-..|.+.+.++
T Consensus 454 gn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~ 533 (913)
T KOG0495|consen 454 GNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIE 533 (913)
T ss_pred CCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHH
Confidence 555555544433 34567777777777777777777777777777777777775432 357888888899999999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038364 550 YGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEE 626 (1076)
Q Consensus 550 ~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~ 626 (1076)
-++.++..+++. ++.+..+|......--..|..++-..+|++... +..+.|-.....+-..|+...|..++.+..+
T Consensus 534 carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~ 612 (913)
T KOG0495|consen 534 CARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFE 612 (913)
T ss_pred HHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 999999998875 345677888877777778999999999988764 5667788888888899999999999999987
Q ss_pred cCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCCh-hh
Q 038364 627 EEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNS-TT 705 (1076)
Q Consensus 627 ~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~-~t 705 (1076)
.... +...|-+-+..-..+.+++.|..+|.+... ..|+...|.--+...--.++.++|++++++.++ .-|+- ..
T Consensus 613 ~~pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl 687 (913)
T KOG0495|consen 613 ANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKL 687 (913)
T ss_pred hCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHH
Confidence 7532 566788888888999999999999998876 467888888878777788999999999999886 35654 35
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHc
Q 038364 706 MSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIY 782 (1076)
Q Consensus 706 ~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~ 782 (1076)
|..+-..+-+.++++.|+..+..-.+. ....+..|..|.+.--+.|.+-.|+.++++..- +|...|-..|..-.++
T Consensus 688 ~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~ 766 (913)
T KOG0495|consen 688 WLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRA 766 (913)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHc
Confidence 666666677778888888887665553 334577889999999999999999999998764 3668999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 038364 783 GNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDF 862 (1076)
Q Consensus 783 g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l 862 (1076)
|..+.|..+..+.++. +.-+...|..-|...-+.++--.....++ ..+-|+...-.+..++....+++.|.+.
T Consensus 767 gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALk------kce~dphVllaia~lfw~e~k~~kar~W 839 (913)
T KOG0495|consen 767 GNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALK------KCEHDPHVLLAIAKLFWSEKKIEKAREW 839 (913)
T ss_pred CCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHH------hccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888874 44444566666665555555333333332 2345677777888899999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHH
Q 038364 863 IRTM-PFKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMN 914 (1076)
Q Consensus 863 ~~~m-~~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~ 914 (1076)
|.+. ...|| ..+|.-+..-+.+||.-+.-.+++.+...-+|.+...+...+.
T Consensus 840 f~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 840 FERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 9987 45565 4589999999999999999999999999999988655555443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.2e-10 Score=133.89 Aligned_cols=512 Identities=11% Similarity=0.079 Sum_probs=308.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCC
Q 038364 382 KLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHN 461 (1076)
Q Consensus 382 ~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d 461 (1076)
.++..|...|+.||.+||.+++.-||..|+.+.|- ++..|.-..+.-...+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45677889999999999999999999999999888 9999988888888899999999999999988776 678
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHH-hcCCCCCcccHHHHHH
Q 038364 462 LSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQ-SLGFRPNGSSVSVVLQ 540 (1076)
Q Consensus 462 ~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~-~~gi~pd~~t~~~ll~ 540 (1076)
..+|+.+..+|.+.|+... ++..++ -...++..+..+|.-..-..++..+. ..+.-||..+...
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~il--- 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAIL--- 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHH---
Confidence 8899999999999999766 222222 11223444555555555555555433 2234455443322
Q ss_pred HHHhcCchHHHHHHHHHHHHcCCC-CchhHHHHHHHHHH-hCCCHHHHHHHHhhcCC-CCHhHHHHHHHHHHhcCChHHH
Q 038364 541 AVTELRLLKYGRESHGYILRNGLD-YDLYVGTSLMDMYV-KNDCLQNAQEVFDNMKN-RNIVAWNSLISGYCFKGLFVNA 617 (1076)
Q Consensus 541 a~~~~g~~~~a~~i~~~~~~~g~~-~d~~v~~aLi~~y~-k~g~~~~A~~lf~~m~~-~d~~~~n~lI~~~~~~g~~~~A 617 (1076)
-..-.|.++.+.++...+-..... |..+ .++-.. -...+++-...-....+ ++..++.+.+..-..+|+.+.|
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhH
Confidence 222334444444444322211110 1111 011111 11223333333333333 8889999999999999999999
Q ss_pred HHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhc
Q 038364 618 KKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQE 697 (1076)
Q Consensus 618 ~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~ 697 (1076)
..++.+|.+.|+..+..-|-.|+-+ .++..-+..++..|.+.|+.|+..|+...+-.+..+|....+ +.
T Consensus 224 k~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~--------~e 292 (1088)
T KOG4318|consen 224 KNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG--------EE 292 (1088)
T ss_pred HHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc--------cc
Confidence 9999999999998888877777766 788888888999999999999999998888777776653221 12
Q ss_pred CCCCChhhHHHHHHHHhcCCCchhHHHHH------------HHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcC
Q 038364 698 DIKPNSTTMSSLLQTCGGLGLLQNGKEIH------------CLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSA 765 (1076)
Q Consensus 698 gi~pd~~t~~~lL~a~~~~g~~~~a~~i~------------~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 765 (1076)
|...+ ..+++-+.+-+-.| ..+.... ....=.|+.....+|...+. ....|+-++..++-..+.
T Consensus 293 ~sq~~-hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~ 368 (1088)
T KOG4318|consen 293 GSQLA-HGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLL 368 (1088)
T ss_pred ccchh-hhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhc
Confidence 22222 22222222111122 1111111 11111233333333322111 122455555555555444
Q ss_pred CC-------ChHHHHHHHHHHHH----------------------cCCHHHHHHHHHHHHHCCCCCCHH-----------
Q 038364 766 NK-------TLASWNCMIMGFAI----------------------YGNGKEAILLFHELLETGFQPDAI----------- 805 (1076)
Q Consensus 766 ~~-------d~~s~n~li~~~~~----------------------~g~~~~Al~l~~~M~~~g~~Pd~~----------- 805 (1076)
.+ ++-.+..++.-|.+ .....+..++.... .||..
T Consensus 369 npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~E 443 (1088)
T KOG4318|consen 369 NPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTE 443 (1088)
T ss_pred CCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHH
Confidence 32 22223222222111 11111111111111 22221
Q ss_pred -----------------HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCC-
Q 038364 806 -----------------TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMP- 867 (1076)
Q Consensus 806 -----------------t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~- 867 (1076)
.-+.++..|...-+..++...-+..... -+ ...|..||+.+.+..++++|..+.++..
T Consensus 444 ler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~ 519 (1088)
T KOG4318|consen 444 LERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDT 519 (1088)
T ss_pred HhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcc
Confidence 1233444444444444444333222221 11 2678999999999999999999999874
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcC---CCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCCCccC
Q 038364 868 ----FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKL---EPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVGVKSV 940 (1076)
Q Consensus 868 ----~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l---~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g~~~~ 940 (1076)
+.-|..-+..+.+...+++....+..+.+++.+. .|.......-+.|..+..|+-+...++.+-....|+..
T Consensus 520 ~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e- 598 (1088)
T KOG4318|consen 520 RDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE- 598 (1088)
T ss_pred cchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-
Confidence 2334455677888888999998888888887652 34334556667777888899998889988888888766
Q ss_pred cceEE
Q 038364 941 LVWSW 945 (1076)
Q Consensus 941 ~~~sw 945 (1076)
.|.-|
T Consensus 599 tgPl~ 603 (1088)
T KOG4318|consen 599 TGPLW 603 (1088)
T ss_pred cccce
Confidence 45555
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.9e-10 Score=123.05 Aligned_cols=480 Identities=13% Similarity=0.102 Sum_probs=269.9
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHhcCCCChhH-----HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCh----hhHHH
Q 038364 432 SVCNCLISMYSRNNKLELATRVFDSMKDHNLSS-----WNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDI----ITWNC 502 (1076)
Q Consensus 432 ~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s-----~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~----~ty~~ 502 (1076)
.+...|..-|.......+|+..++-+.+...++ --.+-..+.+...+.+|+++++..+..-+..+. ...+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 344445555555555556665555443211110 111223344555566666666655443222121 22333
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhH--------HHHHH
Q 038364 503 LLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYV--------GTSLM 574 (1076)
Q Consensus 503 Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v--------~~aLi 574 (1076)
+--.+.+.|++++|+..|+...+.. ||-.+-..++-.+...|+-+..++.|..++..-..+|..- -..|+
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 3345666777777777777666554 6666555555555566777777777766665432222110 11122
Q ss_pred HHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhH
Q 038364 575 DMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFK---GLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKE 651 (1076)
Q Consensus 575 ~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~---g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~ 651 (1076)
+--.+...+...++--..+.++-+.+-..+|.--..- --.+-.++.++.-+...+..|.. -.-.--|.+.|+++.
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dle--i~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLE--INKAGELLKNGDIEG 437 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhh--hhHHHHHHhccCHHH
Confidence 2222221111111100011111111111111000000 00011111111111000000000 001124567888888
Q ss_pred HHHHHHHhHhcCCCCchHHHHHHHH-HHhc-CCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHH
Q 038364 652 ALVIIHHMKNSGIYPNVVTWTSLIS-GSLQ-NENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLC 729 (1076)
Q Consensus 652 A~~lf~~m~~~gi~pd~~ty~~LI~-~~~~-~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~ 729 (1076)
|.+++.-+.++.-+.-...-|.|-. -|.+ ..++.+|.++-+...... +-|....+.--......|++++|.+.+...
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 8888777765421111111222211 2223 334566666555543221 112222222222233568888888888888
Q ss_pred HHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-H
Q 038364 730 LKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSA---NKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-I 805 (1076)
Q Consensus 730 ~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~ 805 (1076)
+...-.-....|| +.-.|.+.|++++|.+.|-++. ..+....-.+.+.|-...+..+|++++.+... +.|+. .
T Consensus 517 l~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ 593 (840)
T KOG2003|consen 517 LNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPA 593 (840)
T ss_pred HcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHH
Confidence 7653322233333 3335778899999999997653 45666667788889999999999999988776 55554 5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-H
Q 038364 806 TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPDATIWGALLGSC-R 883 (1076)
Q Consensus 806 t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd~~~~~~Ll~a~-~ 883 (1076)
...-|...|-+.|+-.+|.+.+-.--+ -++-+.++...|...|....-+++|..+|++. .+.|+.+-|..++..| +
T Consensus 594 ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 594 ILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 666677789999999999987654322 34456888888999999999999999999997 5789999999999776 6
Q ss_pred HcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCC
Q 038364 884 IHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNR 921 (1076)
Q Consensus 884 ~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~ 921 (1076)
+.|++..|...++.....-|++......|+.+....|.
T Consensus 672 rsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred hcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 78999999999999999999999999999999888775
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.9e-10 Score=122.09 Aligned_cols=465 Identities=13% Similarity=0.135 Sum_probs=267.5
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCCcHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHH
Q 038364 368 IMVKLRNEKWENAIKLFREMQFSSAKAISRTIV-KMLQACAKVGAFHEGKQIHGYVLKSALESN----LSVCNCLISMYS 442 (1076)
Q Consensus 368 i~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d----~~v~n~Li~~y~ 442 (1076)
.+-|.-+....||+..|+-..+...-||.-.+- .+-+.+.+.+.+..|...+...+..-...+ ..+.|.+--.+.
T Consensus 208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence 345556667777777777766665555544321 122334455566666666666655433222 334555555677
Q ss_pred hCCChHHHHHHHHhcC--CCChhH-HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhH--------HHHHHHHHhcC
Q 038364 443 RNNKLELATRVFDSMK--DHNLSS-WNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITW--------NCLLSGHFTHG 511 (1076)
Q Consensus 443 k~g~~~~A~~lf~~m~--~~d~~s-~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty--------~~Li~~~~~~g 511 (1076)
+.|.+++|..-|+... .||..+ +|.+|. +..-|+.++..+.|.+|......||..-| ..|+.--.++.
T Consensus 288 q~gqy~dainsfdh~m~~~pn~~a~~nl~i~-~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCMEEAPNFIAALNLIIC-AFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred ecccchhhHhhHHHHHHhCccHHhhhhhhhh-heecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 8899999999998864 467664 555444 44568888888999998765444432211 22222222221
Q ss_pred Ch-----------hhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhC
Q 038364 512 SY-----------QNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKN 580 (1076)
Q Consensus 512 ~~-----------~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~ 580 (1076)
.+ ++++-.--++..--+.||- .. | .+...+....-.-..+..+..+ .-..-|.|.
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~f---a~--------g-~dwcle~lk~s~~~~la~dlei--~ka~~~lk~ 432 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDF---AA--------G-CDWCLESLKASQHAELAIDLEI--NKAGELLKN 432 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccch---hc--------c-cHHHHHHHHHhhhhhhhhhhhh--hHHHHHHhc
Confidence 11 1111111111111122221 00 0 0111111111100001111111 112357789
Q ss_pred CCHHHHHHHHhhcCCCCHhHHHH----HHH-HHHh-cCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHH
Q 038364 581 DCLQNAQEVFDNMKNRNIVAWNS----LIS-GYCF-KGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALV 654 (1076)
Q Consensus 581 g~~~~A~~lf~~m~~~d~~~~n~----lI~-~~~~-~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~ 654 (1076)
|+++.|.+++.-...+|..+-++ |-. -|.+ -.++.+|.+.-+...... +-|....+.--+.-...|++++|.+
T Consensus 433 ~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHH
Confidence 99999988888777655433222 222 2222 235666666665554221 1111111112223345788888888
Q ss_pred HHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCC
Q 038364 655 IIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGF 734 (1076)
Q Consensus 655 lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~ 734 (1076)
.+.+.....-.-....||. --.+-..|++++|++.|-++..- +.-+...+..+.+.|-...+...|.+++.+.... +
T Consensus 512 ~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-i 588 (840)
T KOG2003|consen 512 FYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-I 588 (840)
T ss_pred HHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-C
Confidence 8888765321112222332 22356678888888888877532 2345566777777787778888888877766553 4
Q ss_pred CCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038364 735 IKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALL 811 (1076)
Q Consensus 735 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll 811 (1076)
..|+.+.+-|.+.|-+.|+-..|.+..-+--. -|+.+..-|..-|....-+++|+..|++..- +.|+.+-|..++
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmi 666 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMI 666 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHH
Confidence 45788888888888888888888877644332 3555545566677777888888888888776 788888888777
Q ss_pred HHH-HhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCC
Q 038364 812 AAC-KNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGY 855 (1076)
Q Consensus 812 ~a~-~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~ 855 (1076)
..| .+.|++..|.++++.+.+ .++.+.+...-|+...+..|.
T Consensus 667 asc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 667 ASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhccccc
Confidence 665 568888888888888866 456667777777777766663
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-12 Score=142.59 Aligned_cols=253 Identities=19% Similarity=0.158 Sum_probs=104.4
Q ss_pred HHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHH-HHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCC
Q 038364 675 ISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSS-LLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGN 753 (1076)
Q Consensus 675 I~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~-lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~ 753 (1076)
...+.+.|++++|++++++-......|+...|-. +...+...++.+.|.+.++.+.+.+-. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 4455556666666666644333221343333333 233344556666666666666654322 34455556665 57777
Q ss_pred HHHHHHHHHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 038364 754 LKSAREVFRKSAN--KTLASWNCMIMGFAIYGNGKEAILLFHELLETG-FQPDAITFTALLAACKNSGLVEEGWKYFDSM 830 (1076)
Q Consensus 754 ~~~A~~vf~~m~~--~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g-~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m 830 (1076)
.++|.+++...-+ ++...|..++..+...++++++.+++++..... ..++...|..+...+.+.|+.++|.+.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777766533 455667777777888888888888888876532 2345556666666778888888888888888
Q ss_pred hhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCch
Q 038364 831 STDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTMP--FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSA 907 (1076)
Q Consensus 831 ~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m~--~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~ 907 (1076)
.+. .|+ ......++.++...|+.+++.++++... .+.|+..|..+..++...|+.++|...++++.+..|+|+.
T Consensus 173 l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 753 454 6677788888888888888777776652 2456668899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 908 NYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 908 ~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
....+++++...|+.++|.+++++.
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccc
Confidence 9999999999999999999999876
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.6e-07 Score=104.62 Aligned_cols=237 Identities=15% Similarity=0.137 Sum_probs=161.2
Q ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhh----HHHHHHHHhcCCCchhHHHHHHHHHHcC---------
Q 038364 667 NVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTT----MSSLLQTCGGLGLLQNGKEIHCLCLKNG--------- 733 (1076)
Q Consensus 667 d~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t----~~~lL~a~~~~g~~~~a~~i~~~~~~~g--------- 733 (1076)
|+.--+.-+.++..++-..+-++++++..-. |+.++ +-.||-.-+-..+.....++.+.+-...
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~---~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai 1059 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLD---NSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAI 1059 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcC---CcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHh
Confidence 5556667789999999999999999998742 32221 2222211111222233333333322210
Q ss_pred --------------CCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 038364 734 --------------FIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETG 799 (1076)
Q Consensus 734 --------------~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g 799 (1076)
++.+....+.|++ .-+.+|.|.+.-++.. .+..|..+..+-.+.|...+|++-|-+.
T Consensus 1060 ~~~LyEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika---- 1130 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA---- 1130 (1666)
T ss_pred hhhHHHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc----
Confidence 1111111111211 1233333333333332 3457999999999999999999887543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 038364 800 FQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALL 879 (1076)
Q Consensus 800 ~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll 879 (1076)
-|...|.-++.++++.|.+++-.+++...+++ .-+|.++ +.||-+|++.+++.|-++++.. |+..-.....
T Consensus 1131 --dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~g----pN~A~i~~vG 1201 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIAG----PNVANIQQVG 1201 (1666)
T ss_pred --CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhcC----CCchhHHHHh
Confidence 35567999999999999999999998776664 5566655 5799999999999999888754 7777788889
Q ss_pred HHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 880 GSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 880 ~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
+-|...|.++.|.-++... +.|.-|+..+...|.+..|..--++.
T Consensus 1202 drcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1202 DRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999998887644 56888888888999998888776665
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.3e-09 Score=114.90 Aligned_cols=212 Identities=15% Similarity=0.142 Sum_probs=167.3
Q ss_pred cCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHH
Q 038364 715 GLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILL 791 (1076)
Q Consensus 715 ~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l 791 (1076)
-.|+.-.+.+-++.+++.... +...|.-+..+|....+-++-.+.|+.... .|..+|---...+.-.+++++|+.=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 346777788888888874322 233377778889999999999999987653 3556666556666667889999999
Q ss_pred HHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 038364 792 FHELLETGFQPDAI-TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFK 869 (1076)
Q Consensus 792 ~~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~ 869 (1076)
|++.+. +.|+.+ .|.-+..+..+.+.++++...|++.+++ ++-.++.|+-....+...+++++|.+.|+.. .++
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999988 677764 6777777777889999999999999875 4455889999999999999999999999885 445
Q ss_pred CC---------HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 870 PD---------ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 870 pd---------~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
|+ +.+-.+++-. +-.+++..|+.+.+++++++|...-+|..|+.+-...|+.+||.++|++.
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred cccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 54 2222333322 23489999999999999999999999999999999999999999999986
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.8e-10 Score=130.56 Aligned_cols=223 Identities=15% Similarity=0.117 Sum_probs=150.2
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHcC--CCCChhhHHHHHHHHhhcCCHHH-HHHHHHhcCCCChHHHHHHHHHHHH
Q 038364 705 TMSSLLQTCGGLGLLQNGKEIHCLCLKNG--FIKDAYVATGLIDMYSKSGNLKS-AREVFRKSANKTLASWNCMIMGFAI 781 (1076)
Q Consensus 705 t~~~lL~a~~~~g~~~~a~~i~~~~~~~g--~~~d~~~~~~Li~~y~k~G~~~~-A~~vf~~m~~~d~~s~n~li~~~~~ 781 (1076)
....+-.+|...+++++++.+|+.+.+.. ...+..+|...+.-+-+.=.+.. |..+. .+....+.+|.++.++|..
T Consensus 355 vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li-~~~~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 355 VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLI-DTDPNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHH-hhCCCCcHHHHHhcchhhh
Confidence 33344445555555555555555554421 00133444443332221111111 12222 2223456789889889988
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHH---HHHHHhcCCHH
Q 038364 782 YGNGKEAILLFHELLETGFQP-DAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCM---VDLLGKAGYLD 857 (1076)
Q Consensus 782 ~g~~~~Al~l~~~M~~~g~~P-d~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~l---i~~l~r~G~l~ 857 (1076)
+++.+.|++.|++..+ +.| ...+|+.+-.-+.....+|.|...|+... ..++.||+++ .-.|.|.++++
T Consensus 434 Qkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~~rhYnAwYGlG~vy~Kqek~e 506 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVDPRHYNAWYGLGTVYLKQEKLE 506 (638)
T ss_pred hhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCCchhhHHHHhhhhheeccchhh
Confidence 9999999999988887 677 45677666666777778888888887654 4566677654 55688889999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 858 EAWDFIRTM-PFKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 858 eA~~l~~~m-~~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
.|+-.|++. .+.|. .++...+...+.+.|+.|+|+.++++++-++|.|+-.-+..+.++...++++||.+.++++++.
T Consensus 507 ~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 507 FAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 998888887 56664 4455666677888888999999999999999998888888888888899999999999888653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.8e-09 Score=124.35 Aligned_cols=286 Identities=14% Similarity=0.037 Sum_probs=183.2
Q ss_pred CCCHHHHHHHHhhcCCC--CHh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchh--hhhhhhhhcCChhHHHH
Q 038364 580 NDCLQNAQEVFDNMKNR--NIV-AWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWN--SLVSGYSIWGQSKEALV 654 (1076)
Q Consensus 580 ~g~~~~A~~lf~~m~~~--d~~-~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~--~Li~~y~k~g~~~~A~~ 654 (1076)
.|+++.|++.+....+. +.. .|-.......+.|+++.|.+.+.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57777777777665442 122 2222233336677777777777777654 34443332 22456677777777777
Q ss_pred HHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCC
Q 038364 655 IIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGF 734 (1076)
Q Consensus 655 lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~ 734 (1076)
.++++.+.. +-+......+...|.+.|++++|.+++.++.+.+..++. ....+-
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------ 228 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE------------------------ 228 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH------------------------
Confidence 777776643 224556666777777777777777777777765433211 111000
Q ss_pred CCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038364 735 IKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALL 811 (1076)
Q Consensus 735 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll 811 (1076)
...|..++....+..+.+...++++..+. .++..+..+...+...|+.++|.+.+++..+. .||... .++
T Consensus 229 ---~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l 301 (398)
T PRK10747 229 ---QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLL 301 (398)
T ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHH
Confidence 00122223333333445556666666543 46667777888888888888888888888773 444421 123
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCchH
Q 038364 812 AACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPDATIWGALLGSCRIHGHLEY 890 (1076)
Q Consensus 812 ~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd~~~~~~Ll~a~~~~g~~e~ 890 (1076)
.+....++.+++.+..+...+.+ +-|+..+.++..++.+.|++++|.+.|++. ...|+...+..|...+...|+.++
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~ 379 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEE 379 (398)
T ss_pred HhhccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Confidence 33445588888888888887642 234556778888888888999998888886 567888888888888889999999
Q ss_pred HHHHHHHHhcCC
Q 038364 891 AEIASRRLFKLE 902 (1076)
Q Consensus 891 A~~~~~~l~~l~ 902 (1076)
|...+++.+.+.
T Consensus 380 A~~~~~~~l~~~ 391 (398)
T PRK10747 380 AAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHhhh
Confidence 999988887653
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.9e-08 Score=111.92 Aligned_cols=482 Identities=13% Similarity=0.021 Sum_probs=293.1
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHhcC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038364 431 LSVCNCLISMYSRNNKLELATRVFDSMK--DHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHF 508 (1076)
Q Consensus 431 ~~v~n~Li~~y~k~g~~~~A~~lf~~m~--~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~ 508 (1076)
..-+..+++-+....++.-|.-+-+++. ..|...---+...+.-.|+++.|..+...-.-. ..|..+.......+.
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~ 93 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLV 93 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHH
Confidence 3344445554444555555555555542 123333233556677777888877776554222 227778888888888
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHH
Q 038364 509 THGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQE 588 (1076)
Q Consensus 509 ~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~ 588 (1076)
+..++++|+.++..-... -+...+-..=. +..-..+.+...+..-.+.++ +----..|....+.++|+.
T Consensus 94 ~lk~~~~al~vl~~~~~~---~~~f~yy~~~~--~~~l~~n~~~~~~~~~~essi------c~lRgk~y~al~n~~~ar~ 162 (611)
T KOG1173|consen 94 KLKEWDQALLVLGRGHVE---TNPFSYYEKDA--ANTLELNSAGEDLMINLESSI------CYLRGKVYVALDNREEARD 162 (611)
T ss_pred HHHHHHHHHHHhcccchh---hcchhhcchhh--hceeccCcccccccccchhce------eeeeeehhhhhccHHHHHH
Confidence 888888888888733110 11111110000 000001111100000000000 0000123444556677777
Q ss_pred HHhhcCCCCHhHHHHHHHHHHhcCC-hHHHHHHHHHHHHc-CCCCCccchhhhhhhh-hhcCChhHHHHHHHHhHhcCCC
Q 038364 589 VFDNMKNRNIVAWNSLISGYCFKGL-FVNAKKMLNQMEEE-EIKPDLVSWNSLVSGY-SIWGQSKEALVIIHHMKNSGIY 665 (1076)
Q Consensus 589 lf~~m~~~d~~~~n~lI~~~~~~g~-~~~A~~lf~~M~~~-g~~pd~~t~~~Li~~y-~k~g~~~~A~~lf~~m~~~gi~ 665 (1076)
.|.+....|+..+.++..--..+=- .++-.++|+.+.-. -.+-++...-.+.... ++.-+ ++....-..-.-.+..
T Consensus 163 ~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n-~~~~~r~~~~sl~~l~ 241 (611)
T KOG1173|consen 163 KYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRN-EESLTRNEDESLIGLA 241 (611)
T ss_pred HHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcc-ccccccCchhhhhhhh
Confidence 7766655555544443222111100 11112222210000 0000111111111100 00000 0000000000012334
Q ss_pred CchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHH
Q 038364 666 PNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLI 745 (1076)
Q Consensus 666 pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li 745 (1076)
.+.....+-.+-+...+++.+.++++++..+. .++....+..=|.++...|+-.+-..+-..+++. .+..+.+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 45666667777788899999999999998764 3445555555566777788877777776677764 455678888999
Q ss_pred HHHhhcCCHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHH
Q 038364 746 DMYSKSGNLKSAREVFRKSANKT---LASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVE 821 (1076)
Q Consensus 746 ~~y~k~G~~~~A~~vf~~m~~~d---~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~ 821 (1076)
--|--.|+..+|++.|.+...-| ...|-.+...|+-.|..++|+..+...-+ +-|.. -.+.-+---|.+.++.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcchHHHHHHHHHHhccHH
Confidence 99999999999999998766444 36899999999999999999998887766 23333 23333444588899999
Q ss_pred HHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHHcCCchHH
Q 038364 822 EGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTMP--------FKP-DATIWGALLGSCRIHGHLEYA 891 (1076)
Q Consensus 822 eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m~--------~~p-d~~~~~~Ll~a~~~~g~~e~A 891 (1076)
.|.++|.+.. ++.|+ +..++-+.-+....+.+.+|..+|+... -.+ -..+|+.|..+|++.+.+++|
T Consensus 398 LAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 398 LAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 9999999885 56665 5677777777888999999999998752 111 345789999999999999999
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 038364 892 EIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 892 ~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~ 933 (1076)
+..+++.+.+.|.++.+|..++-+|...|+++.|.+.+.+..
T Consensus 475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999874
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.5e-09 Score=120.93 Aligned_cols=254 Identities=13% Similarity=0.036 Sum_probs=120.9
Q ss_pred hhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCC-ChhhHHHHHHHHhcCCCc
Q 038364 641 SGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKP-NSTTMSSLLQTCGGLGLL 719 (1076)
Q Consensus 641 ~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~p-d~~t~~~lL~a~~~~g~~ 719 (1076)
.++.+.|+.+.|.+.|.+..+....++....-.....+.+.|++++|.+.++++.+. .| +...+..+...+...|++
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--~P~~~~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEM--APRHKEVLKLAEEAYIRSGAW 203 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhH
Confidence 334444555555555555443211111112222344444555555555555555443 23 223444444455555555
Q ss_pred hhHHHHHHHHHHcCCCCChhh-------HHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHH
Q 038364 720 QNGKEIHCLCLKNGFIKDAYV-------ATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAI 789 (1076)
Q Consensus 720 ~~a~~i~~~~~~~g~~~d~~~-------~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al 789 (1076)
+.+.+.+..+.+.+..+.... +..+++.-......+...+.++..++ ++...+-.+...+...|+.++|+
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~ 283 (409)
T TIGR00540 204 QALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQ 283 (409)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHH
Confidence 555555555555433221111 11111111122233444455555543 36677777788888888888888
Q ss_pred HHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHh-
Q 038364 790 LLFHELLETGFQPDAITF---TALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRT- 865 (1076)
Q Consensus 790 ~l~~~M~~~g~~Pd~~t~---~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~- 865 (1076)
+++++..+. .||.... ..........++.+.+.+.++...+...-.|+.....++..++.+.|++++|.+.|+.
T Consensus 284 ~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a 361 (409)
T TIGR00540 284 EIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNV 361 (409)
T ss_pred HHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 888888773 4555321 1111112234555566665555544322222113334555555555555555555552
Q ss_pred --CCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038364 866 --MPFKPDATIWGALLGSCRIHGHLEYAEIASRRL 898 (1076)
Q Consensus 866 --m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l 898 (1076)
....||..++..+...+.+.|+.++|.+++++.
T Consensus 362 ~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 362 AACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 133455555555555555555555555555544
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-06 Score=100.99 Aligned_cols=455 Identities=16% Similarity=0.071 Sum_probs=289.9
Q ss_pred hCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH---hcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHH
Q 038364 474 GLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHF---THGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKY 550 (1076)
Q Consensus 474 ~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~---~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~ 550 (1076)
..+..++++.-+..-...+...+..++..+-.++. ..++.+++ +|-...+.-..|....+.+++.-.
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm-------- 308 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLM-------- 308 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHH--------
Confidence 44566777777777777766667766666555433 34555555 444444444444433333332221
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038364 551 GRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEE 627 (1076)
Q Consensus 551 a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~ 627 (1076)
-.+.++....+..|..+|..|.-+...+|+++.+-+.|++... .....|+.+-..|...|.-..|+.++++-...
T Consensus 309 --~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~ 386 (799)
T KOG4162|consen 309 --LLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKK 386 (799)
T ss_pred --HHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccc
Confidence 1122222333556788888888899999999999999998764 45678999999999999999999999886644
Q ss_pred CCCCCccchhhhhhh-h-hhcCChhHHHHHHHHhHh--cCCC--CchHHHHHHHHHHhc-----------CCChhHHHHH
Q 038364 628 EIKPDLVSWNSLVSG-Y-SIWGQSKEALVIIHHMKN--SGIY--PNVVTWTSLISGSLQ-----------NENYRESLKF 690 (1076)
Q Consensus 628 g~~pd~~t~~~Li~~-y-~k~g~~~~A~~lf~~m~~--~gi~--pd~~ty~~LI~~~~~-----------~g~~~eAl~l 690 (1076)
.-.|+..+--.++.. | -+.|.++++..+-.+..+ .+.. .....|-.+.-+|.. .....++++.
T Consensus 387 ~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqa 466 (799)
T KOG4162|consen 387 SEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQA 466 (799)
T ss_pred ccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHH
Confidence 323544443333322 2 234667777766666554 1111 122233333333322 1234578888
Q ss_pred HHHHhhc-CCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCC--
Q 038364 691 FIQMQQE-DIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANK-- 767 (1076)
Q Consensus 691 ~~~m~~~-gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~-- 767 (1076)
+++..+. +-.|+..-|.++- ++..++++.|.+.....++.+-..+...|..|.-.+...+++.+|..+.+...+.
T Consensus 467 le~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~ 544 (799)
T KOG4162|consen 467 LEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG 544 (799)
T ss_pred HHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 8888663 3344444444443 4566788899999988888766678888888888888899999999888754321
Q ss_pred -C--------------------hHHHHHHHHHHH-----------------------HcCCHHHHHHHHHHHH-------
Q 038364 768 -T--------------------LASWNCMIMGFA-----------------------IYGNGKEAILLFHELL------- 796 (1076)
Q Consensus 768 -d--------------------~~s~n~li~~~~-----------------------~~g~~~~Al~l~~~M~------- 796 (1076)
| +.+...++...- .+++..+|.+..+++.
T Consensus 545 ~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~ 624 (799)
T KOG4162|consen 545 DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL 624 (799)
T ss_pred hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh
Confidence 0 011111111111 0112222222211111
Q ss_pred -HCC---------C--CCCH------HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHH
Q 038364 797 -ETG---------F--QPDA------ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLD 857 (1076)
Q Consensus 797 -~~g---------~--~Pd~------~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~ 857 (1076)
..| + .|+. ..|......+...+..++|...+.+.. ++.|. ...|.-....+...|.++
T Consensus 625 ~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~ 701 (799)
T KOG4162|consen 625 KSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLE 701 (799)
T ss_pred hhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhH
Confidence 111 1 1221 123344455777888888887776664 33443 456777778888999999
Q ss_pred HHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCchHHHH--HHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 038364 858 EAWDFIRTM-PFKPDAT-IWGALLGSCRIHGHLEYAEI--ASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 858 eA~~l~~~m-~~~pd~~-~~~~Ll~a~~~~g~~e~A~~--~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~ 933 (1076)
||.+.|... -+.||.+ +..++...+...|+-..|.. +...+++++|.+++++..|+.++-+.|+.++|.+.|....
T Consensus 702 EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 702 EAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 999998876 4667655 78888889999999999988 9999999999999999999999999999999999999876
Q ss_pred hCCCccCcceEEE
Q 038364 934 EVGVKSVLVWSWI 946 (1076)
Q Consensus 934 ~~g~~~~~~~swi 946 (1076)
+.. ...|...|.
T Consensus 782 qLe-~S~PV~pFs 793 (799)
T KOG4162|consen 782 QLE-ESNPVLPFS 793 (799)
T ss_pred hhc-cCCCccccc
Confidence 654 334555554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.8e-11 Score=130.57 Aligned_cols=255 Identities=15% Similarity=0.187 Sum_probs=105.7
Q ss_pred hhhhhhhhcCChhHHHHHHHHhHhcC-CCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcC
Q 038364 638 SLVSGYSIWGQSKEALVIIHHMKNSG-IYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGL 716 (1076)
Q Consensus 638 ~Li~~y~k~g~~~~A~~lf~~m~~~g-i~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~ 716 (1076)
.+...+.+.|++++|++++++..... ...|..-|..+.......++.++|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44666777788888888775544332 2334455555666666777888888888888764322 34445555555 577
Q ss_pred CCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcC-----CCChHHHHHHHHHHHHcCCHHHHHHH
Q 038364 717 GLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSA-----NKTLASWNCMIMGFAIYGNGKEAILL 791 (1076)
Q Consensus 717 g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~g~~~~Al~l 791 (1076)
+++++|.++.....+. .+++..+..++..|.+.|+++++.++++... ..+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888777665553 2456667778888899999999999988744 24667888889999999999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 038364 792 FHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFK 869 (1076)
Q Consensus 792 ~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~ 869 (1076)
+++..+ ..|+. .....++..+...|+.+++.++++...+. ...++..+..+..+|...|+.++|..++++. ...
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 999998 57864 56778888899999999999999888764 2556677889999999999999999999987 233
Q ss_pred C-CHHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 038364 870 P-DATIWGALLGSCRIHGHLEYAEIASRRLFK 900 (1076)
Q Consensus 870 p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~ 900 (1076)
| |..+...+..++...|+.++|..+.+++++
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 4 677788888999999999999999888765
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.4e-06 Score=94.36 Aligned_cols=421 Identities=12% Similarity=0.126 Sum_probs=259.6
Q ss_pred CCChHHHHHHHhhcCC--CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHH
Q 038364 342 CRDVESANKLFSEVSD--LEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIH 419 (1076)
Q Consensus 342 ~g~~~~A~~vf~~m~~--~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~ 419 (1076)
.+++..|+.+|+.... .++...|---+..=.++.....|..++++.... -|-+
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRV----------------------- 140 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRV----------------------- 140 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchH-----------------------
Confidence 4567778888876543 256667777777777777777777777765532 1111
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCh
Q 038364 420 GYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMK--DHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDI 497 (1076)
Q Consensus 420 ~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~--~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~ 497 (1076)
|. .|-..+.|=-..|++..|+++|++.. +|+...|++.|.-=.+....+.|..++++..-. .|++
T Consensus 141 ----------dq-lWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v 207 (677)
T KOG1915|consen 141 ----------DQ-LWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKV 207 (677)
T ss_pred ----------HH-HHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccH
Confidence 11 12222233333455555555555442 355555555555555555555555555554432 2455
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHH----hcCchHHHHHHHHHHHHcCCCC-chhHHHH
Q 038364 498 ITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVT----ELRLLKYGRESHGYILRNGLDY-DLYVGTS 572 (1076)
Q Consensus 498 ~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~----~~g~~~~a~~i~~~~~~~g~~~-d~~v~~a 572 (1076)
.+|--....=-++|+...|..+|....+.= .|...-..+..+++ +...++.|+-++..++..-... ...++..
T Consensus 208 ~~wikyarFE~k~g~~~~aR~VyerAie~~--~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~ 285 (677)
T KOG1915|consen 208 SNWIKYARFEEKHGNVALARSVYERAIEFL--GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKK 285 (677)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 555555555555555555555555444321 22222233334443 3456778888888887764432 2445666
Q ss_pred HHHHHHhCCCHHHHHHH--------HhhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc--cch---
Q 038364 573 LMDMYVKNDCLQNAQEV--------FDNMKNR---NIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDL--VSW--- 636 (1076)
Q Consensus 573 Li~~y~k~g~~~~A~~l--------f~~m~~~---d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~--~t~--- 636 (1076)
+...=-+.|+.....++ ++.+... |-.+|--.+..--..|+.+...++|++.+.. ++|-. .-|
T Consensus 286 ~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RY 364 (677)
T KOG1915|consen 286 YTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRY 364 (677)
T ss_pred HHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHH
Confidence 66655566664443333 2222222 4567777788778889999999999998754 33311 111
Q ss_pred -----hhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHH----HhcCCChhHHHHHHHHHhhcCCCCChhhHH
Q 038364 637 -----NSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISG----SLQNENYRESLKFFIQMQQEDIKPNSTTMS 707 (1076)
Q Consensus 637 -----~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~----~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~ 707 (1076)
|-.+-.=....+++.+.++|+...+. ++-...||.-+--. -.++.++..|.+++-..+ |.-|-..+|.
T Consensus 365 IYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk 441 (677)
T KOG1915|consen 365 IYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFK 441 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHH
Confidence 11111223467888889999888772 33344555544433 346788888888888776 6788888888
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHcCCCC-ChhhHHHHHHHHhhcCCHHHHHHHHHhcCC-C----ChHHHHHHHHHHHH
Q 038364 708 SLLQTCGGLGLLQNGKEIHCLCLKNGFIK-DAYVATGLIDMYSKSGNLKSAREVFRKSAN-K----TLASWNCMIMGFAI 781 (1076)
Q Consensus 708 ~lL~a~~~~g~~~~a~~i~~~~~~~g~~~-d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-~----d~~s~n~li~~~~~ 781 (1076)
.-|..=.+.+.++..+.+++..++. .| +..+|.-....=...|+.|.|+.+|+-..+ | -...|.+.|.--..
T Consensus 442 ~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~ 519 (677)
T KOG1915|consen 442 GYIELELQLREFDRCRKLYEKFLEF--SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIE 519 (677)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhh
Confidence 8888888889999999999988884 44 556777777777788999999999986553 3 23678888988899
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 038364 782 YGNGKEAILLFHELLETGFQPDAITFTAL 810 (1076)
Q Consensus 782 ~g~~~~Al~l~~~M~~~g~~Pd~~t~~~l 810 (1076)
.|..++|..+++++++. .+..-.|.+.
T Consensus 520 ~~E~ekaR~LYerlL~r--t~h~kvWisF 546 (677)
T KOG1915|consen 520 EGEFEKARALYERLLDR--TQHVKVWISF 546 (677)
T ss_pred cchHHHHHHHHHHHHHh--cccchHHHhH
Confidence 99999999999998874 3333344443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2e-08 Score=117.15 Aligned_cols=246 Identities=11% Similarity=0.034 Sum_probs=171.5
Q ss_pred hcCCChhHHHHHHHHHhhcCCCCChhhHH--HHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHH
Q 038364 679 LQNENYRESLKFFIQMQQEDIKPNSTTMS--SLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKS 756 (1076)
Q Consensus 679 ~~~g~~~eAl~l~~~m~~~gi~pd~~t~~--~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~ 756 (1076)
.+.|++++|.+.+.++.+ ..|+..... .....+...|+.+.|...++.+.+.. +.++.+...+...|.+.|+|++
T Consensus 129 ~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 455556666666655543 334433222 22334455666666666666665532 2345667777888888888888
Q ss_pred HHHHHHhcCCCCh-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038364 757 AREVFRKSANKTL-----------ASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWK 825 (1076)
Q Consensus 757 A~~vf~~m~~~d~-----------~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~ 825 (1076)
|.+++..+.+... ..|..++.......+.+...++++++.+. .+.+......+..++...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 8888877764322 13344444444555666777777776542 34466677888889999999999999
Q ss_pred HHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCC
Q 038364 826 YFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLEP 903 (1076)
Q Consensus 826 ~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P 903 (1076)
++++..+. .|+... .++......|+.+++.+.+++. ...|+ ...+.++...|...+++++|+..|+++++.+|
T Consensus 285 ~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 285 IILDGLKR---QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHhc---CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 99888753 444421 1233334569999999999887 34454 55677888999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 904 CNSANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 904 ~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
++ ..|..|+.++.+.|+.++|.+.+++-..
T Consensus 360 ~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 360 DA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 85 6688999999999999999999987643
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.6e-08 Score=107.00 Aligned_cols=357 Identities=13% Similarity=0.096 Sum_probs=251.1
Q ss_pred CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccch--hhhh
Q 038364 563 LDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSW--NSLV 640 (1076)
Q Consensus 563 ~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~--~~Li 640 (1076)
..-|.+..-...-.+-+.|..+.|++.|.....+-+..|.+-+...--..+.+.+..+.. |...|...+ --+.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~-----~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVV-----GLPSDMHWMKKFFLK 234 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHh-----cCcccchHHHHHHHH
Confidence 344544444444456677888888888887766545555554433333333333222221 111121111 1133
Q ss_pred hhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCC-CC-ChhhHHHHHHHHhcCCC
Q 038364 641 SGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDI-KP-NSTTMSSLLQTCGGLGL 718 (1076)
Q Consensus 641 ~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi-~p-d~~t~~~lL~a~~~~g~ 718 (1076)
.+|-...+.+++..-.+...+.|...+...-+....+.-...++++|..+|+++.+... +. |..+|+.+|-.-.....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 44555557778877777777777666665555555666778889999999999987521 11 56788888755433222
Q ss_pred chhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038364 719 LQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANK---TLASWNCMIMGFAIYGNGKEAILLFHEL 795 (1076)
Q Consensus 719 ~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~---d~~s~n~li~~~~~~g~~~~Al~l~~~M 795 (1076)
+.---+....+-+ +. +.+...+.+-|+-.++.+.|...|++..+- -...|+.|..-|....+...|++-+++.
T Consensus 315 Ls~LA~~v~~idK--yR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 315 LSYLAQNVSNIDK--YR--PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHHhcc--CC--ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 2111111111111 33 445667888999999999999999987753 4478999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCH
Q 038364 796 LETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTMP--FKPDA 872 (1076)
Q Consensus 796 ~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m~--~~pd~ 872 (1076)
.+.. +.|-..|-+|-.+|.-.++..-|.-+|++.. .+.|+ ...|.+|.+.|.+.++++||++.|++.- ...+.
T Consensus 391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~ 466 (559)
T KOG1155|consen 391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG 466 (559)
T ss_pred HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence 9842 4456799999999999999999999999986 45665 7799999999999999999999999973 23355
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhc-------CCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 873 TIWGALLGSCRIHGHLEYAEIASRRLFK-------LEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 873 ~~~~~Ll~a~~~~g~~e~A~~~~~~l~~-------l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
..+..|...+...++.++|...+++-++ .+|+-..+-.-|++-+.+.++|++|...-...
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 7889999999999999999999999876 44554556667899999999999999876655
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.1e-09 Score=121.18 Aligned_cols=196 Identities=11% Similarity=0.006 Sum_probs=146.4
Q ss_pred CChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 038364 736 KDAYVATGLIDMYSKSGNLKSAREVFRKSANKTL---ASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAI-TFTALL 811 (1076)
Q Consensus 736 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~---~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~-t~~~ll 811 (1076)
..+.+|-++.+.|.-.++.+.|.+.|++..+-|+ .+|+.+..-+.....+|+|...|+..+. +.|+.. .|-.+.
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG 496 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLG 496 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhh
Confidence 3467788888888888888888888887765443 5667777777777888888888887765 556553 566677
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCc
Q 038364 812 AACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHL 888 (1076)
Q Consensus 812 ~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~ 888 (1076)
..|.+.++++.|.-.|+... .+.|. .....++...+-+.|+.|+|++++++. .. +.|+..----...+...+++
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRY 573 (638)
T ss_pred hheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcch
Confidence 77888888888888888775 45665 445566777788888888888888886 22 23444434445556677888
Q ss_pred hHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 889 EYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 889 e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
++|...+|++.++-|++...|.+++.+|-+.|+.+.|..-+.-|.+..
T Consensus 574 ~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 574 VEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 999999999999999998899999999999999998888877775543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.5e-09 Score=109.77 Aligned_cols=197 Identities=14% Similarity=0.106 Sum_probs=164.3
Q ss_pred ChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038364 737 DAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAA 813 (1076)
Q Consensus 737 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a 813 (1076)
....+..+...|.+.|++++|.+.+++..+ .+...|..+...+...|+.++|++.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 356677889999999999999999987653 345688889999999999999999999998853 2344567777778
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHH
Q 038364 814 CKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYA 891 (1076)
Q Consensus 814 ~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A 891 (1076)
+...|++++|.+.+++..+..........+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 89999999999999998764222223456778889999999999999999886 3334 456788888999999999999
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 892 EIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 892 ~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
...++++.+..|.++..+..++.++...|++++|.++.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999888888899999999999999999999888754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.4e-08 Score=117.16 Aligned_cols=258 Identities=9% Similarity=0.020 Sum_probs=129.5
Q ss_pred HHHhCCChHHHHHHHHhcC----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhh
Q 038364 440 MYSRNNKLELATRVFDSMK----DHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQN 515 (1076)
Q Consensus 440 ~y~k~g~~~~A~~lf~~m~----~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~ 515 (1076)
.+...|+.+.|.+.|.+.. ..++...-+....+.+.|+++.|.+.++++.+..+. +...+..+...+.+.|++++
T Consensus 127 aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~ 205 (409)
T TIGR00540 127 AAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQA 205 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHH
Confidence 3444455555555555431 111112222344555566666666666666666544 55566666666666666666
Q ss_pred HHHHHHHHHhcCCCCCcccHHH-HHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC
Q 038364 516 VLTLLRGMQSLGFRPNGSSVSV-VLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMK 594 (1076)
Q Consensus 516 Al~l~~~m~~~gi~pd~~t~~~-ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~ 594 (1076)
|.+++..+.+.++.+. ..+.. ...+ +..+++.-......+...+.++..+
T Consensus 206 a~~~l~~l~k~~~~~~-~~~~~l~~~a----------------------------~~~~l~~~~~~~~~~~L~~~~~~~p 256 (409)
T TIGR00540 206 LDDIIDNMAKAGLFDD-EEFADLEQKA----------------------------EIGLLDEAMADEGIDGLLNWWKNQP 256 (409)
T ss_pred HHHHHHHHHHcCCCCH-HHHHHHHHHH----------------------------HHHHHHHHHHhcCHHHHHHHHHHCC
Confidence 6666666666653221 11110 0000 1111111111122333334444444
Q ss_pred C---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchh-hhhhh--hhhcCChhHHHHHHHHhHhcCCCCch
Q 038364 595 N---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWN-SLVSG--YSIWGQSKEALVIIHHMKNSGIYPNV 668 (1076)
Q Consensus 595 ~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~-~Li~~--y~k~g~~~~A~~lf~~m~~~gi~pd~ 668 (1076)
. ++...+..+...+...|+.++|.+++++..+. .||..... .++.. ....++.+.+.+.++...+. .|+.
T Consensus 257 ~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~ 332 (409)
T TIGR00540 257 RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDK 332 (409)
T ss_pred HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCC
Confidence 3 35555666666666666666666666666554 23333210 02222 22235555666666555542 2322
Q ss_pred ---HHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHH
Q 038364 669 ---VTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLK 731 (1076)
Q Consensus 669 ---~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~ 731 (1076)
....++...+.+.|++++|.+.|+........||..++..+...+.+.|+.++|.+++.....
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334456666666666666666666432223456666666666666666776666666665443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.1e-06 Score=93.38 Aligned_cols=461 Identities=16% Similarity=0.121 Sum_probs=231.3
Q ss_pred ccCChhhHHHHhhhcC-CCCc-ccHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhhHHHH
Q 038364 239 EFGDFTSAAKAFFLYF-SRSY-ADWSSFLEDYESFGGEVQELLEVWGELHGKGVIFRSRILTIILKLCTKLMAFWLGVEV 316 (1076)
Q Consensus 239 ~~g~~~~A~~~f~~~~-~~~~-~~wn~li~~~~~~g~~~~~al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 316 (1076)
.-|+++.|...++... .|+. ..|-.+-..-...|+. .-|... ++..|++..++.+
T Consensus 456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl-~iaerc----------------------faai~dvak~r~l 512 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNL-FIAERC----------------------FAAIGDVAKARFL 512 (1636)
T ss_pred ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccc-hHHHHH----------------------HHHHHHHHHHHHH
Confidence 3566777766665542 2333 3465555544455544 333333 3344566667777
Q ss_pred HHHHH-------HhC-CCCChHHHHHHHHHHhcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 038364 317 HASLI-------KRG-FDFDVHLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQ 388 (1076)
Q Consensus 317 ~~~~~-------~~g-~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~ 388 (1076)
|+... ..| -..|-+-..+.+.+..| ++.+|+.+|-+-.. -..-|..|-.-.+|++|+.+-+..
T Consensus 513 hd~~eiadeas~~~ggdgt~fykvra~lail~k--kfk~ae~ifleqn~------te~aigmy~~lhkwde~i~lae~~- 583 (1636)
T KOG3616|consen 513 HDILEIADEASIEIGGDGTDFYKVRAMLAILEK--KFKEAEMIFLEQNA------TEEAIGMYQELHKWDEAIALAEAK- 583 (1636)
T ss_pred HHHHHHHHHHhHhhCCCCchHHHHHHHHHHHHh--hhhHHHHHHHhccc------HHHHHHHHHHHHhHHHHHHHHHhc-
Confidence 66432 222 23344445555555553 57888888866432 124566777777888888776532
Q ss_pred HCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHH--hcCCCChhHHH
Q 038364 389 FSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFD--SMKDHNLSSWN 466 (1076)
Q Consensus 389 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~--~m~~~d~~s~n 466 (1076)
|.+.-...-.+-++++...|.-+.|-++-. .|-. .-+-|..|.|.|....|.+.-. +....|.....
T Consensus 584 --~~p~~eklk~sy~q~l~dt~qd~ka~elk~--------sdgd-~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~ 652 (1636)
T KOG3616|consen 584 --GHPALEKLKRSYLQALMDTGQDEKAAELKE--------SDGD-GLAAIQLYIKAGKPAKAARAALNDEELLADEEILE 652 (1636)
T ss_pred --CChHHHHHHHHHHHHHHhcCchhhhhhhcc--------ccCc-cHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHH
Confidence 322222233455666666666555544321 1111 2345778888888877765532 11223444444
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 038364 467 SMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELR 546 (1076)
Q Consensus 467 ~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g 546 (1076)
-+-.++.+..-+++|-++|+++. ++++|++.|++= |
T Consensus 653 ~ia~alik~elydkagdlfeki~----------------------d~dkale~fkkg-------d--------------- 688 (1636)
T KOG3616|consen 653 HIAAALIKGELYDKAGDLFEKIH----------------------DFDKALECFKKG-------D--------------- 688 (1636)
T ss_pred HHHHHHHhhHHHHhhhhHHHHhh----------------------CHHHHHHHHHcc-------c---------------
Confidence 45555566566666666666553 233444444321 1
Q ss_pred chHHHHHHHHHHHHcCCCCchh-HHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038364 547 LLKYGRESHGYILRNGLDYDLY-VGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQME 625 (1076)
Q Consensus 547 ~~~~a~~i~~~~~~~g~~~d~~-v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~ 625 (1076)
.+..|.++-... ++..++ .-.+--+-+...|+++.|..-|-+... .-.-|.+-.....+.+|+.+++.++
T Consensus 689 af~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~~-----~~kaieaai~akew~kai~ildniq 759 (1636)
T KOG3616|consen 689 AFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQ 759 (1636)
T ss_pred HHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhh
Confidence 111111111000 000000 001111222333444444444433211 0112334445567778888888777
Q ss_pred HcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhh
Q 038364 626 EEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTT 705 (1076)
Q Consensus 626 ~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t 705 (1076)
.... -.--|..+.+-|+..|+++.|.++|-+. ..++--|+.|.++|++++|.++-.+.. |.+.....
T Consensus 760 dqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~ 826 (1636)
T KOG3616|consen 760 DQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISL 826 (1636)
T ss_pred hhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHH
Confidence 5532 2334566777888888888888888654 235566788888888888888776653 33333444
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcCC
Q 038364 706 MSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANK-TLASWNCMIMGFAIYGN 784 (1076)
Q Consensus 706 ~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~-d~~s~n~li~~~~~~g~ 784 (1076)
|.+-..-.-.+|.+.+|++++-.+- .|+ .-|.||-+.|..++..++.++--.. =..+-.-+..-|-..|+
T Consensus 827 yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~ 897 (1636)
T KOG3616|consen 827 YIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGD 897 (1636)
T ss_pred HHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccC
Confidence 4444444455566666655542211 122 2455666666666666655443211 01122233344444455
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038364 785 GKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKY 826 (1076)
Q Consensus 785 ~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~ 826 (1076)
...|.+-|-+..+ |.+.++.|-.++.|++|.++
T Consensus 898 lkaae~~flea~d---------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 898 LKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred hhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHH
Confidence 5555444433322 33334444445555555443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-05 Score=92.27 Aligned_cols=458 Identities=13% Similarity=0.173 Sum_probs=224.4
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHhhcCC----CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038364 329 VHLKCALMNFYGKCRDVESANKLFSEVSD----LEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQ 404 (1076)
Q Consensus 329 ~~~~~~Li~~y~k~g~~~~A~~vf~~m~~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~ 404 (1076)
+.+|-.-+....+.|++..-++.||+... ......|...|.-.-+.|-++-++.++++..+- ++..-.--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 35666667777888888888888886332 124456888888777888888888888887642 3333455566
Q ss_pred HHHccCCcHHHHHHHHHHHHhC------CCCCHHHHHHHHHHHHhCCChH---HHHHHHHhcCCC--C--hhHHHHHHHH
Q 038364 405 ACAKVGAFHEGKQIHGYVLKSA------LESNLSVCNCLISMYSRNNKLE---LATRVFDSMKDH--N--LSSWNSMISS 471 (1076)
Q Consensus 405 a~~~~g~~~~a~~i~~~~~~~g------~~~d~~v~n~Li~~y~k~g~~~---~A~~lf~~m~~~--d--~~s~n~lI~~ 471 (1076)
-++..+++++|.+.+..++... ...+...|.-+-+..++.-+.- ....++..+..+ | ...|++|..-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 6677788888887777665321 2345556666666666543321 233344444322 2 2367777777
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHH-hcCCCCCcccHHHHHHHHHhcCchHH
Q 038364 472 YTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQ-SLGFRPNGSSVSVVLQAVTELRLLKY 550 (1076)
Q Consensus 472 ~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~-~~gi~pd~~t~~~ll~a~~~~g~~~~ 550 (1076)
|.+.|++++|.++|++-...-. .+.-++.+.++|++-....-+..+= +. +.+..+. ..-+++.
T Consensus 258 YIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me--~a~~~~~n~e------------d~~dl~~ 321 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKME--LADEESGNEE------------DDVDLEL 321 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHh--hhhhcccChh------------hhhhHHH
Confidence 7777777777777766554311 2333333444443321111111000 00 0000000 0001111
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038364 551 GRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIK 630 (1076)
Q Consensus 551 a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~ 630 (1076)
...-++.+...+. ...-.++-+=...++..|..-.. ...|+..+-...+.+..+. +.
T Consensus 322 ~~a~~e~lm~rr~--------------------~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vd 378 (835)
T KOG2047|consen 322 HMARFESLMNRRP--------------------LLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VD 378 (835)
T ss_pred HHHHHHHHHhccc--------------------hHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cC
Confidence 1222222221110 00001111111134455544333 2345566666666666543 22
Q ss_pred CC------ccchhhhhhhhhhcCChhHHHHHHHHhHhcCCC---CchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCC
Q 038364 631 PD------LVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIY---PNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKP 701 (1076)
Q Consensus 631 pd------~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~---pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~p 701 (1076)
|- ...|..+.+.|-..|+++.|..+|++..+-... -=...|-.-...=.++.+++.|++++++.....-.|
T Consensus 379 P~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~ 458 (835)
T KOG2047|consen 379 PKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNP 458 (835)
T ss_pred cccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCch
Confidence 22 124567777788888888888888887653211 113455555566667788888888877765322111
Q ss_pred C-----------------hhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhc
Q 038364 702 N-----------------STTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKS 764 (1076)
Q Consensus 702 d-----------------~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 764 (1076)
. ...|...+..--..|-++..+.+++.+++..+.. +.+.......+-...-++++.+++++.
T Consensus 459 ~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaT-Pqii~NyAmfLEeh~yfeesFk~YErg 537 (835)
T KOG2047|consen 459 ELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT-PQIIINYAMFLEEHKYFEESFKAYERG 537 (835)
T ss_pred hhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 1 1122222222233344555555555555433221 111111122222333445555555544
Q ss_pred CC----CCh-HHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHhh
Q 038364 765 AN----KTL-ASWNCMIMGFAI---YGNGKEAILLFHELLETGFQPDAITFTALLAA--CKNSGLVEEGWKYFDSMS 831 (1076)
Q Consensus 765 ~~----~d~-~s~n~li~~~~~---~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a--~~~~g~~~eA~~~~~~m~ 831 (1076)
.. |++ ..||+.+.-+.+ .-+.+.|..+|++.++ |.+|...-+..|+-| =-.-|....|..++++..
T Consensus 538 I~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 538 ISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred CccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 32 222 245544433332 1234555555555555 445544433333322 112355555555555543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.8e-05 Score=90.09 Aligned_cols=126 Identities=7% Similarity=0.117 Sum_probs=74.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHhhcCCCCChhhHHHH-----HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038364 332 KCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEI-----IMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQAC 406 (1076)
Q Consensus 332 ~~~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~l-----i~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~ 406 (1076)
+-.+-+.+.|.|-+..|.+.|..+...+-++.-+.+ +.+|.-.-.++++++.++.|...+++.|-.+...+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344555666777777777777666542222222222 234555556777777777777777776666666555555
Q ss_pred HccCCcHHHHHHHHHHHHh-----------CCCCCHHHHHHHHHHHHhCCChHHHHHHHHhc
Q 038364 407 AKVGAFHEGKQIHGYVLKS-----------ALESNLSVCNCLISMYSRNNKLELATRVFDSM 457 (1076)
Q Consensus 407 ~~~g~~~~a~~i~~~~~~~-----------g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m 457 (1076)
...=..+.-.++|+..... ++.-|+.+.-..|.+-+|.|++.+..++..+-
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicres 750 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRES 750 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhcc
Confidence 5444444455555543321 23455566666777777778877777776654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.9e-10 Score=91.19 Aligned_cols=50 Identities=32% Similarity=0.585 Sum_probs=39.4
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 038364 460 HNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFT 509 (1076)
Q Consensus 460 ~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~ 509 (1076)
||+++||++|++|++.|++++|+++|++|.+.|+.||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67778888888888888888888888888888888777777777777764
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.3e-10 Score=90.65 Aligned_cols=50 Identities=30% Similarity=0.369 Sum_probs=48.3
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 038364 359 EDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAK 408 (1076)
Q Consensus 359 ~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~ 408 (1076)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999975
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.9e-06 Score=90.40 Aligned_cols=498 Identities=11% Similarity=0.086 Sum_probs=296.3
Q ss_pred CHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCC--CCh-hHHHHHHHH
Q 038364 395 ISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKD--HNL-SSWNSMISS 471 (1076)
Q Consensus 395 ~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~--~d~-~s~n~lI~~ 471 (1076)
+...|..-.+-=-..+++..|+.+++..+... ..+..+|-..+.+=.|+..+..|+.+|++... |-+ ..|--.+-.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 33344433333345677888889998888766 45777888888888889999999999987632 222 245555555
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHH
Q 038364 472 YTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYG 551 (1076)
Q Consensus 472 ~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a 551 (1076)
=-..|++..|.++|.+-.+ ..||..+|++.|+.=.+.+..+.|..++++..-.. |+..+|.--..-=-+.|....+
T Consensus 151 EE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H--P~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH--PKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec--ccHHHHHHHHHHHHhcCcHHHH
Confidence 5567888899999987654 46888999999998888888899988888887654 8877777766666777888888
Q ss_pred HHHHHHHHHc-CC-CCchhHHHHHHHHHHhCCCHHHHHHHHhhc----CCC-CHhHHHHHHHHHHhcCChHH---HHHHH
Q 038364 552 RESHGYILRN-GL-DYDLYVGTSLMDMYVKNDCLQNAQEVFDNM----KNR-NIVAWNSLISGYCFKGLFVN---AKKML 621 (1076)
Q Consensus 552 ~~i~~~~~~~-g~-~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m----~~~-d~~~~n~lI~~~~~~g~~~~---A~~lf 621 (1076)
+++++.+++. |- ..+..++++....=.+|...+.|.-+|.-. +.. ....|......--+-|+-.. ++--=
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 8888777653 21 112334444444444566666666665432 221 12223222222222233221 11111
Q ss_pred HHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCC
Q 038364 622 NQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKP 701 (1076)
Q Consensus 622 ~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~p 701 (1076)
+++ -++.+.+. -.-|-.+|--.++.-...|+.+...++|++.+.. ++|
T Consensus 307 Rk~------------------------------qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp 354 (677)
T KOG1915|consen 307 RKF------------------------------QYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPP 354 (677)
T ss_pred hhh------------------------------HHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCc
Confidence 111 11122211 1224445555555555556666666666665542 334
Q ss_pred Ch-------hhHHHHHHHH---hcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHh----hcCCHHHHHHHHHhcC--
Q 038364 702 NS-------TTMSSLLQTC---GGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYS----KSGNLKSAREVFRKSA-- 765 (1076)
Q Consensus 702 d~-------~t~~~lL~a~---~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~----k~G~~~~A~~vf~~m~-- 765 (1076)
-. .+|.=+=-+| ....+.+.+++++...++. ++...+++.-+=-||+ ++.++..|++++....
T Consensus 355 ~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~ 433 (677)
T KOG1915|consen 355 ASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK 433 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc
Confidence 21 1111111111 2345667777777777662 2223344444433443 5677777777776554
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHH
Q 038364 766 NKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYS 844 (1076)
Q Consensus 766 ~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~ 844 (1076)
.|-..++...|..-.+.++++....++++.++ ..|.. .+|.-....-...|+.|.|+.+|+-......+......|.
T Consensus 434 cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk 511 (677)
T KOG1915|consen 434 CPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWK 511 (677)
T ss_pred CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH
Confidence 34555667777777777788888888888877 45544 5666666556667888888888887776533333345677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----HcC-----------CchHHHHHHHHHhc----CCC
Q 038364 845 CMVDLLGKAGYLDEAWDFIRTM-PFKPDATIWGALLGSCR-----IHG-----------HLEYAEIASRRLFK----LEP 903 (1076)
Q Consensus 845 ~li~~l~r~G~l~eA~~l~~~m-~~~pd~~~~~~Ll~a~~-----~~g-----------~~e~A~~~~~~l~~----l~P 903 (1076)
+.|+-=...|.++.|..+++++ .-.+...+|-++..--. +.+ ++..|..+|+++.. .+|
T Consensus 512 aYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~ 591 (677)
T KOG1915|consen 512 AYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTP 591 (677)
T ss_pred HhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCc
Confidence 7777777888888888888876 33455557777654322 223 55677788877653 334
Q ss_pred CCch--hHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 904 CNSA--NYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 904 ~~~~--~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
.... ..-..-++=...|...+...+-++|
T Consensus 592 KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 592 KEERLMLLEAWKNMEETFGTEGDVERVQSKM 622 (677)
T ss_pred HHHHHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence 2211 1122233334556666666666666
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-06 Score=96.42 Aligned_cols=323 Identities=11% Similarity=0.091 Sum_probs=230.8
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHH---
Q 038364 596 RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWT--- 672 (1076)
Q Consensus 596 ~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~--- 672 (1076)
.|...+-..-..+-+.|....|+..|.+.... -+..|.+-+....-.-+.+.+..+-..+ |...+|-
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l------~~~~h~M~~~ 231 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGL------PSDMHWMKKF 231 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcC------cccchHHHHH
Confidence 45544444555567788999999999887732 2344544444333333344333332222 1112222
Q ss_pred HHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCC--CChhhHHHHHHHHhh
Q 038364 673 SLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFI--KDAYVATGLIDMYSK 750 (1076)
Q Consensus 673 ~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~--~d~~~~~~Li~~y~k 750 (1076)
-+..++-...+.+++++-.......|+.-+...-+....+.-...+++.|+.+|+.+.+...- .|..+|+.++-.-..
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 234566666688899988888888777665555544455556778999999999999986211 255666655433322
Q ss_pred cCCHHH-HHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHH
Q 038364 751 SGNLKS-AREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAI-TFTALLAACKNSGLVEEGWKYFD 828 (1076)
Q Consensus 751 ~G~~~~-A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~ 828 (1076)
+.++.- |..++ .+.+--+.|...+.+-|...++.++|+..|++..+ +.|... .|+.+-.-|....+...|.+-++
T Consensus 312 ~skLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSKLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHHHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 222222 22222 22333445666677888889999999999999998 667764 56666666999999999999999
Q ss_pred HhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC
Q 038364 829 SMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 829 ~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
...+ +.| |-..|-.+..+|.-.+...=|+-+|++. ..+| |...|.+|...|.+.++.++|++.|++++.....+
T Consensus 389 rAvd---i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 389 RAVD---INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred HHHh---cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 8874 445 4568889999999999999999999997 4555 67799999999999999999999999999988888
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 906 SANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 906 ~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
...|+.|+++|.+.++.++|...+++-.+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 89999999999999999999999988644
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.9e-05 Score=87.55 Aligned_cols=193 Identities=16% Similarity=0.179 Sum_probs=124.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCh
Q 038364 368 IMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKL 447 (1076)
Q Consensus 368 i~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~ 447 (1076)
|.+-.....|.+|+.+++.++.... -.--|..+..-|+..|+++.|.+++-.. ..++--|+||.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 3445567788888888887765432 2223566778899999999999887532 2356779999999999
Q ss_pred HHHHHHHHhcCCC--ChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 038364 448 ELATRVFDSMKDH--NLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQS 525 (1076)
Q Consensus 448 ~~A~~lf~~m~~~--d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~ 525 (1076)
++|.++-++...| .+++|-+-..-+-+.|++.+|.+++-.... || .-|..|-+.|..++.+++..+-..
T Consensus 808 ~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 808 EDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhCh
Confidence 9999998887655 345676666677788888888887754422 22 346677777777777777665432
Q ss_pred cCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhh
Q 038364 526 LGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDN 592 (1076)
Q Consensus 526 ~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~ 592 (1076)
.-+ ..|-..+-.-+-..|++..|+.-+-..- -+.+-++||-..+.+++|.++-+.
T Consensus 879 d~l---~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 879 DHL---HDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred hhh---hHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhc
Confidence 111 1233333444555666666655443322 245566666666666666665543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.3e-06 Score=94.82 Aligned_cols=494 Identities=10% Similarity=0.003 Sum_probs=291.2
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHH--hcCCCChhHHHHHHHHHHhCCC
Q 038364 400 VKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFD--SMKDHNLSSWNSMISSYTGLGY 477 (1076)
Q Consensus 400 ~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~--~m~~~d~~s~n~lI~~~~~~g~ 477 (1076)
..+++-+.....+..|.-+-+.+...+.+|+.. --+..+|.-.|+.+.|..+.. .+.+.|..+.......+.+..+
T Consensus 20 ~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~--~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~ 97 (611)
T KOG1173|consen 20 RRLVRDALMQHRYKTALFWADKVAGLTNDPADI--YWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKE 97 (611)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhccCChHHH--HHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 334444444455555666666665555444433 335677777788888877764 4567888888888888889899
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHH
Q 038364 478 VDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGY 557 (1076)
Q Consensus 478 ~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~ 557 (1076)
+++|+.++.+-... -+...|-.-=. ...-..+.+. ++.... -....+-.--..+....+.++|+.-+.+
T Consensus 98 ~~~al~vl~~~~~~---~~~f~yy~~~~--~~~l~~n~~~----~~~~~~--~essic~lRgk~y~al~n~~~ar~~Y~~ 166 (611)
T KOG1173|consen 98 WDQALLVLGRGHVE---TNPFSYYEKDA--ANTLELNSAG----EDLMIN--LESSICYLRGKVYVALDNREEARDKYKE 166 (611)
T ss_pred HHHHHHHhcccchh---hcchhhcchhh--hceeccCccc----cccccc--chhceeeeeeehhhhhccHHHHHHHHHH
Confidence 99998888733110 01111100000 0000001111 000000 0000000001123344556666666666
Q ss_pred HHHcCCCCchhHHHHHHHHHHhCC-CHHHHHHHHhhcCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038364 558 ILRNGLDYDLYVGTSLMDMYVKND-CLQNAQEVFDNMKN-----RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKP 631 (1076)
Q Consensus 558 ~~~~g~~~d~~v~~aLi~~y~k~g-~~~~A~~lf~~m~~-----~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~p 631 (1076)
++.. |+.-+.++..+-...= ..++-+.+|+...- .|+...-.+.........-++....-.+-.-.|..-
T Consensus 167 Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~ 242 (611)
T KOG1173|consen 167 ALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAE 242 (611)
T ss_pred HHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhh
Confidence 5544 2223333222211110 11122333332111 111111111111100000000000000000112223
Q ss_pred CccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHH
Q 038364 632 DLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQ 711 (1076)
Q Consensus 632 d~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~ 711 (1076)
|......-.+-+-..+++.+..++++.+.+. .++....+..-|.++...|+..+-..+=.+|.+. .+-...+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 3333444455666788999999999988774 2455566666778889999999888888888764 3445688999988
Q ss_pred HHhcCCCchhHHHHHHHHHHcCCCCC-hhhHHHHHHHHhhcCCHHHHHHHHHhcCC--CC-hHHHHHHHHHHHHcCCHHH
Q 038364 712 TCGGLGLLQNGKEIHCLCLKNGFIKD-AYVATGLIDMYSKSGNLKSAREVFRKSAN--KT-LASWNCMIMGFAIYGNGKE 787 (1076)
Q Consensus 712 a~~~~g~~~~a~~i~~~~~~~g~~~d-~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d-~~s~n~li~~~~~~g~~~~ 787 (1076)
-|...|+..+|++.+..... ++|. ...|-.+.+.|+-.|.-|.|...+....+ ++ -..+--+..-|.+.+..+-
T Consensus 321 YYl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 88888999999999988766 4432 45788889999999999999887754332 11 1111123345777889999
Q ss_pred HHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcC-CCCC----CcccHHHHHHHHHhcCCHHHHHH
Q 038364 788 AILLFHELLETGFQPDAI-TFTALLAACKNSGLVEEGWKYFDSMSTDY-NIIP----TIEHYSCMVDLLGKAGYLDEAWD 861 (1076)
Q Consensus 788 Al~l~~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~~-g~~p----~~~~y~~li~~l~r~G~l~eA~~ 861 (1076)
|.+.|.+... +-|+.. ..+-+--..-+.+.+.+|..+|+.....- .+.+ ...+++.|..+|.+.+++++|+.
T Consensus 399 Ae~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 399 AEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999998886 677664 33333333445788999999998876311 1111 23457888999999999999999
Q ss_pred HHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 038364 862 FIRTM--PFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLL 916 (1076)
Q Consensus 862 l~~~m--~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y 916 (1076)
.+++. ..+.|..++.++.-.+...|+++.|...|.+.+.+.|+|..+-.+|..+.
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 99986 24567889999999999999999999999999999999866655655443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.5e-07 Score=94.77 Aligned_cols=302 Identities=15% Similarity=0.124 Sum_probs=165.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCccch---hhhhhhhhhcCChhHHHHHHHHhHhcCCCCch------HHHHHHHHHHhcCC
Q 038364 612 GLFVNAKKMLNQMEEEEIKPDLVSW---NSLVSGYSIWGQSKEALVIIHHMKNSGIYPNV------VTWTSLISGSLQNE 682 (1076)
Q Consensus 612 g~~~~A~~lf~~M~~~g~~pd~~t~---~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~------~ty~~LI~~~~~~g 682 (1076)
.+.++|.++|-+|.+. |..|| -+|-+.|-+.|.+|.|+++-+.+.++ ||. ...-.|..-|...|
T Consensus 49 ~Q~dKAvdlF~e~l~~----d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 49 NQPDKAVDLFLEMLQE----DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred cCcchHHHHHHHHHhc----CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhh
Confidence 3444555555555432 22222 34445555555555555555555432 221 11223334455556
Q ss_pred ChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCC----hhhHHHHHHHHhhcCCHHHHH
Q 038364 683 NYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKD----AYVATGLIDMYSKSGNLKSAR 758 (1076)
Q Consensus 683 ~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d----~~~~~~Li~~y~k~G~~~~A~ 758 (1076)
-+|.|.++|..+.+.| .--......|+..|-...++++|.++...+.+.+-.+. ...|.-|...+.-..+.+.|.
T Consensus 122 l~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 122 LLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 6666666666655432 11223445555666666666666666666655443322 123444555566667777777
Q ss_pred HHHHhcCCCChH---HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 038364 759 EVFRKSANKTLA---SWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYN 835 (1076)
Q Consensus 759 ~vf~~m~~~d~~---s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g 835 (1076)
..+.+..+.|.. .--.+...+...|++++|++.++...+.+..--..+...|..+|.+.|+.+++...+.++.+.
T Consensus 201 ~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~-- 278 (389)
T COG2956 201 ELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET-- 278 (389)
T ss_pred HHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--
Confidence 777766654332 223345667777888888888888777432222235666777788888888888877777653
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHH
Q 038364 836 IIPTIEHYSCMVDLLGKAGYLDEAWDFI-RTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMN 914 (1076)
Q Consensus 836 ~~p~~~~y~~li~~l~r~G~l~eA~~l~-~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~ 914 (1076)
.+....-..+.+.-....-.++|...+ +...-+|+...+..|+..-.. +
T Consensus 279 -~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~--------------------d--------- 328 (389)
T COG2956 279 -NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLA--------------------D--------- 328 (389)
T ss_pred -cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhc--------------------c---------
Confidence 344444444444444444444444433 334455666555555433111 0
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCccCcceEEEEECCEEEEE
Q 038364 915 LLAMSNRWEDVERLRHSMDEVGVKSVLVWSWIQIDQIVHVF 955 (1076)
Q Consensus 915 ~y~~~G~~~eA~~~~~~m~~~g~~~~~~~swi~~~~~~~~f 955 (1076)
+..|++.+...+++.|...-++..|.+.-...+-..|.|
T Consensus 329 --aeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 329 --AEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred --ccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceee
Confidence 133668888888888887777777755444444445544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.8e-05 Score=92.32 Aligned_cols=149 Identities=13% Similarity=0.206 Sum_probs=102.7
Q ss_pred CChHHHHHHHH--HHhcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHC-C--------CCCC
Q 038364 327 FDVHLKCALMN--FYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFS-S--------AKAI 395 (1076)
Q Consensus 327 ~d~~~~~~Li~--~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g--------~~p~ 395 (1076)
-|..+..++++ .|..-|++|.|.+-..-+. ..+.|..|.+.+++..+.+-|.-.+-.|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik---S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK---SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh---hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 57778888886 5888999999988887774 4678999999999999988888777766421 1 1222
Q ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCCh-hHHHHHHHHHHh
Q 038364 396 SRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNL-SSWNSMISSYTG 474 (1076)
Q Consensus 396 ~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~-~s~n~lI~~~~~ 474 (1076)
.+=..+.-.....|-+++|+.++.+..+.. .|=..|-..|.+++|.++-+.-.+-.. .||-....-+-.
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 222222222346788999999998887643 344567778999999988765432211 255555555556
Q ss_pred CCChHHHHHHHHHH
Q 038364 475 LGYVDVAWSLFNKM 488 (1076)
Q Consensus 475 ~g~~~~A~~lf~~M 488 (1076)
.++.+.|++.|++-
T Consensus 871 r~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKA 884 (1416)
T ss_pred hccHHHHHHHHHhc
Confidence 67788888877653
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.92 E-value=0.00034 Score=80.59 Aligned_cols=457 Identities=11% Similarity=0.100 Sum_probs=261.7
Q ss_pred CCCcccHHHHHHH---HHhCCCChHHHHHHHHHHHhCCCC---CCcchHHHHHHHHhccCChhhHHHHHHHHHHhC-CCC
Q 038364 255 SRSYADWSSFLED---YESFGGEVQELLEVWGELHGKGVI---FRSRILTIILKLCTKLMAFWLGVEVHASLIKRG-FDF 327 (1076)
Q Consensus 255 ~~~~~~wn~li~~---~~~~g~~~~~al~lf~~m~~~g~~---p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~ 327 (1076)
..+.-.|...|.. ..++..+-+.+.+.++.-.++++. -=...+..-+.-....+++..-+..++.+++.- ..-
T Consensus 57 p~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtq 136 (835)
T KOG2047|consen 57 PGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQ 136 (835)
T ss_pred CCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHh
Confidence 4456678777742 334443324566666665555432 112344445566677788888888888887653 333
Q ss_pred ChHHHHHHHHHHhcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHC------CCCCCHHHHHH
Q 038364 328 DVHLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFS------SAKAISRTIVK 401 (1076)
Q Consensus 328 d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~------g~~p~~~t~~~ 401 (1076)
...+|.-.+......|-++-+.+++.+-.. -+..+-+--|.-++..+++++|-+.+...... .-+.+...|.-
T Consensus 137 H~rIW~lyl~Fv~~~~lPets~rvyrRYLk-~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~e 215 (835)
T KOG2047|consen 137 HDRIWDLYLKFVESHGLPETSIRVYRRYLK-VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLE 215 (835)
T ss_pred hccchHHHHHHHHhCCChHHHHHHHHHHHh-cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHH
Confidence 445777788888888899999999998766 56667888899999999999999999887532 12445556666
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHhCCC--CC--HHHHHHHHHHHHhCCChHHHHHHHHhcCC--CChhHHHHHHHHHHhC
Q 038364 402 MLQACAKVGAFHEGKQIHGYVLKSALE--SN--LSVCNCLISMYSRNNKLELATRVFDSMKD--HNLSSWNSMISSYTGL 475 (1076)
Q Consensus 402 ll~a~~~~g~~~~a~~i~~~~~~~g~~--~d--~~v~n~Li~~y~k~g~~~~A~~lf~~m~~--~d~~s~n~lI~~~~~~ 475 (1076)
+-.-.++..+.-....+ +.+++.|+. +| ...|++|.+-|.+.|.++.|+.+|++-.. -.+..++.+.++|++-
T Consensus 216 lcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~F 294 (835)
T KOG2047|consen 216 LCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQF 294 (835)
T ss_pred HHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHH
Confidence 66666666555444443 334555542 34 46899999999999999999999988643 2445677777888763
Q ss_pred CChHHHHHHHHHHH--hCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC----------CCC-cccHHHHHHHH
Q 038364 476 GYVDVAWSLFNKMN--SSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGF----------RPN-GSSVSVVLQAV 542 (1076)
Q Consensus 476 g~~~~A~~lf~~M~--~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi----------~pd-~~t~~~ll~a~ 542 (1076)
....-+..+ +|- +.+-.-|...+ +-.+.-|+.+.+.+. .|+ ..++..-++
T Consensus 295 EE~~~~~~m--e~a~~~~~n~ed~~dl-------------~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~-- 357 (835)
T KOG2047|consen 295 EESCVAAKM--ELADEESGNEEDDVDL-------------ELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK-- 357 (835)
T ss_pred HHHHHHHHH--hhhhhcccChhhhhhH-------------HHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--
Confidence 322211111 111 11212122333 333344444443320 021 112222211
Q ss_pred HhcCchHHHHHHHHHHHHcC-----CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCC---CH----hHHHHHHHHHHh
Q 038364 543 TELRLLKYGRESHGYILRNG-----LDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNR---NI----VAWNSLISGYCF 610 (1076)
Q Consensus 543 ~~~g~~~~a~~i~~~~~~~g-----~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~---d~----~~~n~lI~~~~~ 610 (1076)
...|+..+-...+..+++.- ...-...|..+.+.|-..|+++.|+.+|++...- .+ .+|-.-...=.+
T Consensus 358 l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElr 437 (835)
T KOG2047|consen 358 LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELR 437 (835)
T ss_pred hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHh
Confidence 22344555566666666542 1223457888999999999999999999988762 22 345555556667
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcc--------------------chhhhhhhhhhcCChhHHHHHHHHhHhcCC-CCchH
Q 038364 611 KGLFVNAKKMLNQMEEEEIKPDLV--------------------SWNSLVSGYSIWGQSKEALVIIHHMKNSGI-YPNVV 669 (1076)
Q Consensus 611 ~g~~~~A~~lf~~M~~~g~~pd~~--------------------t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi-~pd~~ 669 (1076)
+.+++.|+++.+..... |... .|.-.++.--..|-++....+++++.+..+ .|..+
T Consensus 438 h~~~~~Al~lm~~A~~v---P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii 514 (835)
T KOG2047|consen 438 HENFEAALKLMRRATHV---PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII 514 (835)
T ss_pred hhhHHHHHHHHHhhhcC---CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH
Confidence 78888888877765432 2221 122222333334555555566666655322 22211
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCCh-hhHHHHHHHHh---cCCCchhHHHHHHHHHHcCCCC
Q 038364 670 TWTSLISGSLQNENYRESLKFFIQMQQEDIKPNS-TTMSSLLQTCG---GLGLLQNGKEIHCLCLKNGFIK 736 (1076)
Q Consensus 670 ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~-~t~~~lL~a~~---~~g~~~~a~~i~~~~~~~g~~~ 736 (1076)
.= ...-+-.+.-++++.+.+++-+..=-.|+. ..|+.-|.-+. ....++.++.+|+++++ |..|
T Consensus 515 ~N--yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp 582 (835)
T KOG2047|consen 515 IN--YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPP 582 (835)
T ss_pred HH--HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCH
Confidence 10 111123344556666666554433222332 23443333222 12345666666666666 3443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1e-07 Score=111.16 Aligned_cols=229 Identities=18% Similarity=0.158 Sum_probs=161.0
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHc-----CC-CCCh-hhHHHHHHHHhhcCCHHHHHHHHHhcCC-------C-C-
Q 038364 705 TMSSLLQTCGGLGLLQNGKEIHCLCLKN-----GF-IKDA-YVATGLIDMYSKSGNLKSAREVFRKSAN-------K-T- 768 (1076)
Q Consensus 705 t~~~lL~a~~~~g~~~~a~~i~~~~~~~-----g~-~~d~-~~~~~Li~~y~k~G~~~~A~~vf~~m~~-------~-d- 768 (1076)
|...+...|...|+++.|.+.+...++. |. .|.. ...+.+..+|...+++++|..+|+++.. + +
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444555566666666666665555442 21 1222 2233577788888888888888876542 1 1
Q ss_pred --hHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCC-CCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhhcCC--CC
Q 038364 769 --LASWNCMIMGFAIYGNGKEAILLFHELLE-----TGFQ-PDAIT-FTALLAACKNSGLVEEGWKYFDSMSTDYN--II 837 (1076)
Q Consensus 769 --~~s~n~li~~~~~~g~~~~Al~l~~~M~~-----~g~~-Pd~~t-~~~ll~a~~~~g~~~eA~~~~~~m~~~~g--~~ 837 (1076)
..+++.|...|.+.|++++|...+++..+ .|.. |+..+ ++.+...|...+.+++|..++....+.+. +.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 24677788889999999888777766553 2333 33333 45555569999999999999987765443 22
Q ss_pred CC----cccHHHHHHHHHhcCCHHHHHHHHHhCC-------C--CCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcC--
Q 038364 838 PT----IEHYSCMVDLLGKAGYLDEAWDFIRTMP-------F--KPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKL-- 901 (1076)
Q Consensus 838 p~----~~~y~~li~~l~r~G~l~eA~~l~~~m~-------~--~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l-- 901 (1076)
++ ..+|+.|..+|.+.|+++||++++++.- . .+. ...++.|..+|...++++.|.++|++...+
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 4579999999999999999999998861 1 222 346777888999999999999999887653
Q ss_pred --CCCC---chhHHHHHHHHHHcCChHHHHHHHHHHH
Q 038364 902 --EPCN---SANYNLMMNLLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 902 --~P~~---~~~y~~L~~~y~~~G~~~eA~~~~~~m~ 933 (1076)
.|++ ..+|..|+.+|.+.|++++|.++-+...
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4544 4568899999999999999999988873
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-06 Score=95.05 Aligned_cols=280 Identities=14% Similarity=0.073 Sum_probs=179.7
Q ss_pred cCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHH
Q 038364 510 HGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEV 589 (1076)
Q Consensus 510 ~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~l 589 (1076)
.|++..|+++..+-.+.+-.| ...|.....+.-..|+.+.+-....++.+..-.++..+.-+........|+.+.|+.-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 356666666666655554323 1234444455566777777777777777665566666777777777888888888776
Q ss_pred HhhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc-------cchhhhhhhhhhcCChhHHHHHHHHh
Q 038364 590 FDNMK---NRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDL-------VSWNSLVSGYSIWGQSKEALVIIHHM 659 (1076)
Q Consensus 590 f~~m~---~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~-------~t~~~Li~~y~k~g~~~~A~~lf~~m 659 (1076)
.++.. .++..........|.+.|++.+...++.+|.+.|.--|. .+|+.+++-....+..+.-...++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 65544 467788888888899999999999999998888765443 34566666655555555555555555
Q ss_pred HhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChh
Q 038364 660 KNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAY 739 (1076)
Q Consensus 660 ~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~ 739 (1076)
..+ .+.++..-.+++.-+.+.|+.++|.++..+..+.+..|+ -..+-.+.+.++.+.-.+..+.-.+. ...++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChh
Confidence 432 233455556677777788888888888887777666665 12222444555555555554444332 223345
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhcC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038364 740 VATGLIDMYSKSGNLKSAREVFRKSA--NKTLASWNCMIMGFAIYGNGKEAILLFHELL 796 (1076)
Q Consensus 740 ~~~~Li~~y~k~G~~~~A~~vf~~m~--~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~ 796 (1076)
.+.+|...|.+.+.|.+|.+.|+... .++..+|+-+..++.+.|+.++|.+.+++..
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 66667777777777777777776544 3455666666666666666666666666554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.5e-07 Score=94.78 Aligned_cols=284 Identities=15% Similarity=0.111 Sum_probs=161.8
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhCCChHH
Q 038364 373 RNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESN---LSVCNCLISMYSRNNKLEL 449 (1076)
Q Consensus 373 ~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d---~~v~n~Li~~y~k~g~~~~ 449 (1076)
-+.++++|+++|-+|.+.. +-+..+-.++-+-+.+.|..+.|..+|..++++.--+. ....-.|-.-|.+.|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3578899999999998742 22333445677888899999999999998887532111 2344456666788888888
Q ss_pred HHHHHHhcCCCChh---HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCChhhHHHHHHH
Q 038364 450 ATRVFDSMKDHNLS---SWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDI----ITWNCLLSGHFTHGSYQNVLTLLRG 522 (1076)
Q Consensus 450 A~~lf~~m~~~d~~---s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~----~ty~~Li~~~~~~g~~~~Al~l~~~ 522 (1076)
|..+|..+.+.+.. ..--++..|-+..++++|++.-+++...+-++.. .-|--+...+....+.+.|..++.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 88888877654333 4555777788888888888888777776544322 2233444444455666666666666
Q ss_pred HHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCH----
Q 038364 523 MQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNI---- 598 (1076)
Q Consensus 523 m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~---- 598 (1076)
..+.+ |+.+--+ -.+.+.+...|+++.|.+.++.+.+.|.
T Consensus 206 Alqa~--~~cvRAs----------------------------------i~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ 249 (389)
T COG2956 206 ALQAD--KKCVRAS----------------------------------IILGRVELAKGDYQKAVEALERVLEQNPEYLS 249 (389)
T ss_pred HHhhC--ccceehh----------------------------------hhhhHHHHhccchHHHHHHHHHHHHhChHHHH
Confidence 66554 4333222 2333444445555555555555444332
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHH
Q 038364 599 VAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGS 678 (1076)
Q Consensus 599 ~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~ 678 (1076)
.+...|..+|.+.|+.++.+..+..+.+... +...-..|-..-....-.+.|..++.+-..+ .|+...+..+|+..
T Consensus 250 evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~ 325 (389)
T COG2956 250 EVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhh
Confidence 2334444555555555555555555554421 2211122222222222233444433333332 46777777776655
Q ss_pred hc---CCChhHHHHHHHHHhhc
Q 038364 679 LQ---NENYRESLKFFIQMQQE 697 (1076)
Q Consensus 679 ~~---~g~~~eAl~l~~~m~~~ 697 (1076)
.. .|...+.+.+++.|..+
T Consensus 326 l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 326 LADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred hccccccchhhhHHHHHHHHHH
Confidence 43 34456666667776654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-06 Score=96.35 Aligned_cols=212 Identities=12% Similarity=0.112 Sum_probs=106.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHH
Q 038364 612 GLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFF 691 (1076)
Q Consensus 612 g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~ 691 (1076)
|+...|.+-|+..+.....++.. |.-+..+|....+.++.++.|+...+.. +-|..+|-.-...+.-.+++++|..=|
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred CCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 44444444444444332111111 4444445555555555555555554421 113334444444444455555555555
Q ss_pred HHHhhcCCCCC-hhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC--CC
Q 038364 692 IQMQQEDIKPN-STTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN--KT 768 (1076)
Q Consensus 692 ~~m~~~gi~pd-~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d 768 (1076)
++.+. +.|+ ...|..+--+.-+.+.++..+..|+...+. ++.-+.+|+.....+...++++.|.+.|+...+ +.
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 55543 3332 233433333444555566666666655554 555556666666666666666666666654432 11
Q ss_pred -------hHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 038364 769 -------LASW--NCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMS 831 (1076)
Q Consensus 769 -------~~s~--n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~ 831 (1076)
...+ .+++ .+.-.+++.+|++++++..+ +.|-. ..+.+|...-.+.|++++|+++|+...
T Consensus 495 ~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1111 1111 11123666667777776666 44544 356666666666677777777776553
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.2e-06 Score=93.63 Aligned_cols=60 Identities=18% Similarity=0.157 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 038364 873 TIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 873 ~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~ 933 (1076)
..+.+|..-|.+++.+.+|..+++.+++..|+ ..+|..+++.|.+.|+..+|.+++++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 55666666666667777777777766666664 3566677777777777777776666643
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.7e-05 Score=84.67 Aligned_cols=130 Identities=18% Similarity=0.134 Sum_probs=88.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHH-HHHHHH
Q 038364 772 WNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYS-CMVDLL 850 (1076)
Q Consensus 772 ~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~-~li~~l 850 (1076)
-.+|.+.+.-..++++.+..++....- +.-|..--..+..|.+..|++.+|.++|-.+... .+ .+..+|. .|...|
T Consensus 362 RQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCy 438 (557)
T KOG3785|consen 362 RQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCY 438 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHH
Confidence 345555555566666666666666553 2223333334667888889999999988776431 22 2334454 456788
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHH-HHHHHcCCchHHHHHHHHHhcCCCC
Q 038364 851 GKAGYLDEAWDFIRTMPFKPDATIWGALL-GSCRIHGHLEYAEIASRRLFKLEPC 904 (1076)
Q Consensus 851 ~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll-~a~~~~g~~e~A~~~~~~l~~l~P~ 904 (1076)
.++|+.+-|++++-++..+.+..+...++ +-|.+.+.+--|-++|+.+-.++|.
T Consensus 439 i~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 439 IRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 89999999999998887656666655555 5688999998899999988888875
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.6e-07 Score=111.37 Aligned_cols=211 Identities=12% Similarity=0.022 Sum_probs=154.9
Q ss_pred CCchhHHHHHHHHHHcCCCC-ChhhHHHHHHHHhhcCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHHcCCHHHHHHHH
Q 038364 717 GLLQNGKEIHCLCLKNGFIK-DAYVATGLIDMYSKSGNLKSAREVFRKSAN--K-TLASWNCMIMGFAIYGNGKEAILLF 792 (1076)
Q Consensus 717 g~~~~a~~i~~~~~~~g~~~-d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~s~n~li~~~~~~g~~~~Al~l~ 792 (1076)
+++++|...++.+++. .| +...+..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+
T Consensus 318 ~~~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATEL--DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4467777778777773 44 566777888889999999999999988664 3 4567888899999999999999999
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 038364 793 HELLETGFQPDAI-TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFK 869 (1076)
Q Consensus 793 ~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~ 869 (1076)
++..+ +.|+.. .+..++..+...|++++|...++++.+. ..|+ +..+..+...|...|+.++|.+.++++ +..
T Consensus 396 ~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 396 NECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 99998 566643 2333444566789999999999888653 2343 445777888999999999999999887 445
Q ss_pred CCHH-HHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 870 PDAT-IWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 870 pd~~-~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
|+.. .++.+...+...| +.|...++++++..-..+..+..+..+|+-.|+-+.+... +++.+.|
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 5544 4445555566666 5888888887765433333444577888888887777776 7775543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.4e-07 Score=101.42 Aligned_cols=210 Identities=14% Similarity=0.048 Sum_probs=149.6
Q ss_pred CchhHHHHHHHHHHcC-CCC--ChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHH
Q 038364 718 LLQNGKEIHCLCLKNG-FIK--DAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILL 791 (1076)
Q Consensus 718 ~~~~a~~i~~~~~~~g-~~~--d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l 791 (1076)
..+.+..-+..++... ..| ....|..+...|.+.|++++|...|++..+ .+...|+.+...+...|++++|+..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444555555555431 222 245677788899999999999999987654 4567899999999999999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-C-C
Q 038364 792 FHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-P-F 868 (1076)
Q Consensus 792 ~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~ 868 (1076)
|++..+ +.|+. .++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.+++. . .
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999998 67765 56777777788999999999999988753 454332222233445678899999999664 2 2
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHh-------cCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 869 KPDATIWGALLGSCRIHGHLEYAEIASRRLF-------KLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 869 ~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~-------~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
.|+. |.. .......|+...+ ..++.+. ++.|+.++.|..|+.+|.+.|++++|...+++..+.+
T Consensus 196 ~~~~--~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQ--WGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred Cccc--cHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3333 331 2233345666554 2444443 4556677889999999999999999999999986654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.2e-05 Score=89.23 Aligned_cols=414 Identities=14% Similarity=0.117 Sum_probs=208.7
Q ss_pred hCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccH-HHHHHHHHhcCchHHHH
Q 038364 474 GLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSV-SVVLQAVTELRLLKYGR 552 (1076)
Q Consensus 474 ~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~-~~ll~a~~~~g~~~~a~ 552 (1076)
..|+-++|.+..+.-....++ +.+.|+.+.-.+....++++|++.|+.....+ ||.... .-+----++.++++...
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred cccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHH
Confidence 446666777666666665555 66777777777777777777777777776655 553221 11111111222222221
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC
Q 038364 553 ESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEE-IKP 631 (1076)
Q Consensus 553 ~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g-~~p 631 (1076)
.......+ ........|.....++.-.|+...|..+.++..+.. -.|
T Consensus 130 ~tr~~LLq--------------------------------l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~ 177 (700)
T KOG1156|consen 130 ETRNQLLQ--------------------------------LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSP 177 (700)
T ss_pred HHHHHHHH--------------------------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 11111111 112344566666667777777777777777666543 234
Q ss_pred Cccchhhhh------hhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhh
Q 038364 632 DLVSWNSLV------SGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTT 705 (1076)
Q Consensus 632 d~~t~~~Li------~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t 705 (1076)
+...|.-.. .-..+.|..++|.+.+..-... +.-....-.+..+.+.+.++.++|..++..++. ..||..-
T Consensus 178 s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~--rnPdn~~ 254 (700)
T KOG1156|consen 178 SKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE--RNPDNLD 254 (700)
T ss_pred CHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh--hCchhHH
Confidence 444442221 2234456666666655544321 111122223345566677777777777777765 3566666
Q ss_pred HHHHHHHHh-cC-CCchhHHHHHHHHHHc---CCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCCh-HHHHHHHHHH
Q 038364 706 MSSLLQTCG-GL-GLLQNGKEIHCLCLKN---GFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTL-ASWNCMIMGF 779 (1076)
Q Consensus 706 ~~~lL~a~~-~~-g~~~~a~~i~~~~~~~---g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~-~s~n~li~~~ 779 (1076)
|.-.+..|. .. +..+....++....+. ...|-....+ +++ -..-.+...+++..+.++++ ..+..+.+-|
T Consensus 255 Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls-vl~---~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy 330 (700)
T KOG1156|consen 255 YYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS-VLN---GEELKEIVDKYLRPLLSKGVPSVFKDLRSLY 330 (700)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH-HhC---cchhHHHHHHHHHHHhhcCCCchhhhhHHHH
Confidence 555555444 12 2222222444433321 0001100001 010 01112222233333333332 2233333333
Q ss_pred HHcCCHHHHHHHHHHHH----HCC----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-ccc
Q 038364 780 AIYGNGKEAILLFHELL----ETG----------FQPDAI--TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEH 842 (1076)
Q Consensus 780 ~~~g~~~~Al~l~~~M~----~~g----------~~Pd~~--t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~ 842 (1076)
-.-...+-..++.-.+. ..| -.|... |+..+...+-+.|+++.|..+.+... +..|+ ++.
T Consensus 331 k~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEl 407 (700)
T KOG1156|consen 331 KDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIEL 407 (700)
T ss_pred hchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHH
Confidence 22221111111111111 111 144444 33445556788888888888888775 55676 557
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCc------h-hHH--H
Q 038364 843 YSCMVDLLGKAGYLDEAWDFIRTMP--FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNS------A-NYN--L 911 (1076)
Q Consensus 843 y~~li~~l~r~G~l~eA~~l~~~m~--~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~------~-~y~--~ 911 (1076)
|-.-..++..+|.+++|..++++.. ..||..+-.--..-..+..+.++|.+++.+...-+-+-. . .+. -
T Consensus 408 y~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E 487 (700)
T KOG1156|consen 408 YLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLE 487 (700)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHh
Confidence 7777788888889998888888863 345544333333444567788888887776554332100 0 011 1
Q ss_pred HHHHHHHcCChHHHHHHHHHH
Q 038364 912 MMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 912 L~~~y~~~G~~~eA~~~~~~m 932 (1076)
=+..|.++|+|.+|++-+...
T Consensus 488 ~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 488 DGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hhHHHHHHHHHHHHHHHHhhH
Confidence 256788888888887766655
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=0.00058 Score=80.29 Aligned_cols=407 Identities=14% Similarity=0.076 Sum_probs=241.4
Q ss_pred CCCCCCchhhhHHHH--HHHccCChhhHHHHhhhcCCCCcccHHHHHHHHHhCCCChHHHHHHHHHHHhC-CC-------
Q 038364 221 GKIWNSDDMVKSLIF--HYLEFGDFTSAAKAFFLYFSRSYADWSSFLEDYESFGGEVQELLEVWGELHGK-GV------- 290 (1076)
Q Consensus 221 g~~~~~~~~~~~ll~--~y~~~g~~~~A~~~f~~~~~~~~~~wn~li~~~~~~g~~~~~al~lf~~m~~~-g~------- 290 (1076)
|++.-|+.+...+++ .|.-.|+.+.|.+....+. +-+.|..|.+.+.+..+. +.|.-.+..|... |.
T Consensus 720 gle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RL-DVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 720 GLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRL-DVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred CccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccc-cHHHHhhhhhhhhhhHHHHHHHH
Confidence 444345566666765 5778999999988776664 345799999999999988 8887777776431 21
Q ss_pred -CCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhcCCCCChhhHHHHHH
Q 038364 291 -IFRSRILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIM 369 (1076)
Q Consensus 291 -~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~ 369 (1076)
.|+ .+=..+.-....+|.+++|+.++.+..+.. -|=..|...|.+++|.++-+.-.+..=-.+|-.-..
T Consensus 797 q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~ 866 (1416)
T KOG3617|consen 797 QNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAK 866 (1416)
T ss_pred hCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHH
Confidence 122 222233333456788888888888776543 233467788999999888764322011124444455
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHH
Q 038364 370 VKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLEL 449 (1076)
Q Consensus 370 ~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~ 449 (1076)
-+-..++.+.|++.|++-. + | .+-...+|.- ++. ++-.++.+ ..|...|.---.-.-..|++|.
T Consensus 867 ~Lear~Di~~AleyyEK~~---~-h-afev~rmL~e-----~p~---~~e~Yv~~---~~d~~L~~WWgqYlES~Gemda 930 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAG---V-H-AFEVFRMLKE-----YPK---QIEQYVRR---KRDESLYSWWGQYLESVGEMDA 930 (1416)
T ss_pred HHHhhccHHHHHHHHHhcC---C-h-HHHHHHHHHh-----ChH---HHHHHHHh---ccchHHHHHHHHHHhcccchHH
Confidence 5556788888998888642 1 1 1111122211 111 11111211 1233444433444445799999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 038364 450 ATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFR 529 (1076)
Q Consensus 450 A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~ 529 (1076)
|..++.... .|-+|++..|-.|+.++|-++-++-- |..+..-|.+.|-..|++.+|..+|.+.+
T Consensus 931 Al~~Y~~A~-----D~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq----- 994 (1416)
T KOG3617|consen 931 ALSFYSSAK-----DYFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ----- 994 (1416)
T ss_pred HHHHHHHhh-----hhhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----
Confidence 999987654 57788888888999999988876542 66677778889999999999999998775
Q ss_pred CCcccHHHHHHHHHhcCch---------------HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC
Q 038364 530 PNGSSVSVVLQAVTELRLL---------------KYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMK 594 (1076)
Q Consensus 530 pd~~t~~~ll~a~~~~g~~---------------~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~ 594 (1076)
+|...|+.|-..+.- -.|...++ +.|.. ...-+-.|-|.|.+.+|.++--+-.
T Consensus 995 ----afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyE---e~g~~-----~~~AVmLYHkAGm~~kALelAF~tq 1062 (1416)
T KOG3617|consen 995 ----AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYE---ELGGY-----AHKAVMLYHKAGMIGKALELAFRTQ 1062 (1416)
T ss_pred ----HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHH---Hcchh-----hhHHHHHHHhhcchHHHHHHHHhhc
Confidence 355555555443322 12222222 22211 1223456788888888777633322
Q ss_pred C--------------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhH
Q 038364 595 N--------------RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMK 660 (1076)
Q Consensus 595 ~--------------~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~ 660 (1076)
+ .|....+--...++.+.++++|..++-..++- ..-+. .|+..++.-..++-+.|.
T Consensus 1063 Qf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~---------~~Alq-lC~~~nv~vtee~aE~mT 1132 (1416)
T KOG3617|consen 1063 QFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF---------SGALQ-LCKNRNVRVTEEFAELMT 1132 (1416)
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHHH-HHhcCCCchhHHHHHhcC
Confidence 2 35566666677777888888888877665432 11122 222333333333333332
Q ss_pred h-cCCCCchH----HHHHHHHHHhcCCChhHHHHHHHHH
Q 038364 661 N-SGIYPNVV----TWTSLISGSLQNENYRESLKFFIQM 694 (1076)
Q Consensus 661 ~-~gi~pd~~----ty~~LI~~~~~~g~~~eAl~l~~~m 694 (1076)
- +.-.|+.. ....+...|.+.|.+..|-+-|-+.
T Consensus 1133 p~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1133 PTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred cCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 1 21233332 3445566777888877777666554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.00012 Score=83.84 Aligned_cols=184 Identities=15% Similarity=0.124 Sum_probs=119.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcCCCC-hHHHHHHHH-HHHH-cCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH
Q 038364 741 ATGLIDMYSKSGNLKSAREVFRKSANKT-LASWNCMIM-GFAI-YGNGKEAILLFHELLETGFQPDAI--TFTALLAACK 815 (1076)
Q Consensus 741 ~~~Li~~y~k~G~~~~A~~vf~~m~~~d-~~s~n~li~-~~~~-~g~~~~Al~l~~~M~~~g~~Pd~~--t~~~ll~a~~ 815 (1076)
-++++.+|. +..+.++++-...+... .....+++. ++.. .....+|.+++...-+. .|+.. .....+.--.
T Consensus 312 N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~i 387 (652)
T KOG2376|consen 312 NNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKI 387 (652)
T ss_pred HHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHH
Confidence 356667765 45566777776666543 233344433 3322 22477788888777663 55553 3333444467
Q ss_pred hcCCHHHHHHHHH--------HhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-HHHHHHH
Q 038364 816 NSGLVEEGWKYFD--------SMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM--------PFKPD-ATIWGAL 878 (1076)
Q Consensus 816 ~~g~~~eA~~~~~--------~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m--------~~~pd-~~~~~~L 878 (1076)
..|+++.|.+++. .+.+ +.-.+.+...++.+|.+.+.-+-|..++.+. ...+. ..+|.-+
T Consensus 388 s~gn~~~A~~il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~a 464 (652)
T KOG2376|consen 388 SQGNPEVALEILSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREA 464 (652)
T ss_pred hcCCHHHHHHHHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHH
Confidence 7899999999988 4432 2333456677888999888766555555443 22222 2244444
Q ss_pred HHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 879 LGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 879 l~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
..--.++|+-++|...++++++.+|++....+.++-.|++.. .+.|+.+-+.+
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k~L 517 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSKKL 517 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhhcC
Confidence 444567899999999999999999999999999999999874 46666655443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.2e-06 Score=93.37 Aligned_cols=162 Identities=17% Similarity=0.157 Sum_probs=96.2
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 038364 739 YVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD-AITFTALLAAC 814 (1076)
Q Consensus 739 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd-~~t~~~ll~a~ 814 (1076)
..+..+...|...|++++|.+.+++..+ .+...|..+...+...|++++|++.|++..+....|. ...+..+...+
T Consensus 66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (234)
T TIGR02521 66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA 145 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 3444455555666666666666654432 2334555666666666677777776666665322222 23444455556
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHH
Q 038364 815 KNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAE 892 (1076)
Q Consensus 815 ~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~ 892 (1076)
...|++++|.+.+++..+. ...+...+..+...+.+.|++++|.+.+++. . .+.+...+..+...+...|+.+.|.
T Consensus 146 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (234)
T TIGR02521 146 LKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQ 223 (234)
T ss_pred HHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 6777777777777766543 1122445666777777777777777777665 1 2234455556666677777777777
Q ss_pred HHHHHHhcCC
Q 038364 893 IASRRLFKLE 902 (1076)
Q Consensus 893 ~~~~~l~~l~ 902 (1076)
...+.+.+..
T Consensus 224 ~~~~~~~~~~ 233 (234)
T TIGR02521 224 RYGAQLQKLF 233 (234)
T ss_pred HHHHHHHhhC
Confidence 7777665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.00012 Score=86.12 Aligned_cols=131 Identities=19% Similarity=0.192 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHH
Q 038364 771 SWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAI-TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVD 848 (1076)
Q Consensus 771 s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~ 848 (1076)
.|......+.+.+..++|..-+.+... +.|-.. .|.-.-..+...|..+||.+.|.... .+.|+ +....++..
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHH
Confidence 466667788888888888877777765 444443 33333334667788999999888774 56676 557788899
Q ss_pred HHHhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCc
Q 038364 849 LLGKAGYLDEAWD--FIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 849 ~l~r~G~l~eA~~--l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~ 906 (1076)
++.+.|+-.-|.. +..++ ...| +...|..|.....+.|+.+.|...|..++++++.+|
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 9999997666666 77776 4445 567999999999999999999999999999988765
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.5e-05 Score=85.40 Aligned_cols=120 Identities=16% Similarity=0.165 Sum_probs=79.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHH--HHHHH--Hh
Q 038364 368 IMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNC--LISMY--SR 443 (1076)
Q Consensus 368 i~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~--Li~~y--~k 443 (1076)
++-+.++|++++|+..-.++...+ +-|...+..-+-+..+.+.++.|..+.. +.+. ..+++. +=.+| .+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHH
Confidence 456677888999999988887655 4455566666667778888888774432 2221 111122 23344 36
Q ss_pred CCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC
Q 038364 444 NNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQ 494 (1076)
Q Consensus 444 ~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~ 494 (1076)
.+..|+|.+.++.....+..+...--..+.+.|++++|+++|+.+.+.+..
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d 142 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD 142 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc
Confidence 788888888888665555556666666778888888888888888776443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.6e-06 Score=101.33 Aligned_cols=235 Identities=16% Similarity=0.145 Sum_probs=147.6
Q ss_pred chhhhhhhhhhcCChhHHHHHHHHhHhc-----C-CCCchHH-HHHHHHHHhcCCChhHHHHHHHHHhhc---CCCCChh
Q 038364 635 SWNSLVSGYSIWGQSKEALVIIHHMKNS-----G-IYPNVVT-WTSLISGSLQNENYRESLKFFIQMQQE---DIKPNST 704 (1076)
Q Consensus 635 t~~~Li~~y~k~g~~~~A~~lf~~m~~~-----g-i~pd~~t-y~~LI~~~~~~g~~~eAl~l~~~m~~~---gi~pd~~ 704 (1076)
|...|..+|...|+++.|..+++...+. | ..|.+.+ -+.+...|...+++++|..+|+++... ..-++..
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444667777777777777777665432 1 0122211 222444556666666666666665431 0001110
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC----------CChH-HHH
Q 038364 705 TMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN----------KTLA-SWN 773 (1076)
Q Consensus 705 t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------~d~~-s~n 773 (1076)
.-..+++.|...|.+.|++++|...+++..+ +.+. ..+
T Consensus 281 -------------------------------~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~ 329 (508)
T KOG1840|consen 281 -------------------------------AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLS 329 (508)
T ss_pred -------------------------------HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 0123344555566666666666655553321 1222 356
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhcC----C-CCCC-c
Q 038364 774 CMIMGFAIYGNGKEAILLFHELLET---GFQPDA----ITFTALLAACKNSGLVEEGWKYFDSMSTDY----N-IIPT-I 840 (1076)
Q Consensus 774 ~li~~~~~~g~~~~Al~l~~~M~~~---g~~Pd~----~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~----g-~~p~-~ 840 (1076)
.++..+...+++++|..++++..+. -..++. -++..+-..|.+.|+++||.++|+++.... + ..+. .
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 6777788888888888887765531 123333 367888888889999999999988876542 1 1222 4
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCHH-HHHHHHHHHHHcCCchHHHHHHHHHhc
Q 038364 841 EHYSCMVDLLGKAGYLDEAWDFIRTM--------PFKPDAT-IWGALLGSCRIHGHLEYAEIASRRLFK 900 (1076)
Q Consensus 841 ~~y~~li~~l~r~G~l~eA~~l~~~m--------~~~pd~~-~~~~Ll~a~~~~g~~e~A~~~~~~l~~ 900 (1076)
..++.|...|.+.++.++|.++|.+. +..|+.. +|..|...|+..|++|.|+++.+++..
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 46778888889999999888888774 2445554 899999999999999999999988763
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.00042 Score=83.55 Aligned_cols=177 Identities=16% Similarity=0.043 Sum_probs=109.7
Q ss_pred hHHHHHHHHHHhCCCCCCchhhhHHHHHHHccCChhhHHHHhhhcC---CCCcccHHHHHHHHHhCCCChHHHHHHHHHH
Q 038364 209 SVKSKHAQMIKMGKIWNSDDMVKSLIFHYLEFGDFTSAAKAFFLYF---SRSYADWSSFLEDYESFGGEVQELLEVWGEL 285 (1076)
Q Consensus 209 ~~~~~h~~~~~~g~~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~---~~~~~~wn~li~~~~~~g~~~~~al~lf~~m 285 (1076)
....+|+.+....+...=...+..|-.-|...-+...|+++|+... ..+..+|-....-|++...+ ++|+...-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~w-e~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTW-EEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccH-HHHHHHHHHH
Confidence 4566777766555541222456777777887767888999998764 45667888899999999999 8888772221
Q ss_pred HhCC-CCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhcCCCCChhhH
Q 038364 286 HGKG-VIFRSRILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLW 364 (1076)
Q Consensus 286 ~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~ 364 (1076)
-+.. ...-...+..+--.+...++...+..-++..++.. .-|...|..|..+|.++|++..|.++|+.... -+..+|
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~-LrP~s~ 630 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL-LRPLSK 630 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh-cCcHhH
Confidence 1110 00001111111112333444444444444444433 23667888899999999999999999987765 333333
Q ss_pred HHH---HHHHHhCCChhHHHHHHHHHH
Q 038364 365 NEI---IMVKLRNEKWENAIKLFREMQ 388 (1076)
Q Consensus 365 n~l---i~~~~~~g~~~eAl~lf~~M~ 388 (1076)
-.- -..-+.+|.+.+|+..+....
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 321 223467888899888887765
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00035 Score=84.21 Aligned_cols=545 Identities=12% Similarity=0.055 Sum_probs=290.2
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHh
Q 038364 377 WENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDS 456 (1076)
Q Consensus 377 ~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~ 456 (1076)
...|+..|-+-.+..+ -=...|..|-..|+...+...|.+.|....+.. ..|...+.++.+.|+...+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 6667776665554321 112356677777776667777888887776554 33566788888999999999999888555
Q ss_pred cCCCChh---HHH--HHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC
Q 038364 457 MKDHNLS---SWN--SMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPN 531 (1076)
Q Consensus 457 m~~~d~~---s~n--~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd 531 (1076)
..+++.. .|| -.--.|.+.++...|+.-|+...+..++ |...|..+..+|...|++..|+++|.+...-. |+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cH
Confidence 4444332 333 3333466778888888888888887777 88889999999999999999999998876643 54
Q ss_pred cccHHHHHHH--HHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhC-------CCHHHHHHHHhhcCC-------
Q 038364 532 GSSVSVVLQA--VTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKN-------DCLQNAQEVFDNMKN------- 595 (1076)
Q Consensus 532 ~~t~~~ll~a--~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~-------g~~~~A~~lf~~m~~------- 595 (1076)
. +|.....+ -+..|.+.++...++.++..--. -....+.|...+.++ |-...|.+.|+.-.+
T Consensus 629 s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~-e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 629 S-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSL-ERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred h-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 3 33333322 24567777777777766543100 111112222222221 222222222221111
Q ss_pred ----CCHhHHHHHHHHHH---hcC--ChH-HHHH-HHHHHHHcCC--------------------CCCccchhhhhhhhh
Q 038364 596 ----RNIVAWNSLISGYC---FKG--LFV-NAKK-MLNQMEEEEI--------------------KPDLVSWNSLVSGYS 644 (1076)
Q Consensus 596 ----~d~~~~n~lI~~~~---~~g--~~~-~A~~-lf~~M~~~g~--------------------~pd~~t~~~Li~~y~ 644 (1076)
.|...|-.+-.++. +.. .+. --+. ++.+....+. ..+..+|..|...|.
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 12222222211110 000 000 0000 0111111111 112334433333332
Q ss_pred h----cC----ChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcC
Q 038364 645 I----WG----QSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGL 716 (1076)
Q Consensus 645 k----~g----~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~ 716 (1076)
+ +| +...|...+....+. ...+..+||.|--. ...|++.-|...|-+-... .+-+..+|..+--.|...
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L-~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSL-CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHH-hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEec
Confidence 2 22 223455555544431 12355566655444 4445666665555554432 233455666666667777
Q ss_pred CCchhHHHHHHHHHHcCCCCC-hhhHHHHHHHHhhcCCHHHHHHHHHh-----cC---CCChHHHHHHHHHHHHcCCHHH
Q 038364 717 GLLQNGKEIHCLCLKNGFIKD-AYVATGLIDMYSKSGNLKSAREVFRK-----SA---NKTLASWNCMIMGFAIYGNGKE 787 (1076)
Q Consensus 717 g~~~~a~~i~~~~~~~g~~~d-~~~~~~Li~~y~k~G~~~~A~~vf~~-----m~---~~d~~s~n~li~~~~~~g~~~~ 787 (1076)
.+++.|.+.+..... +.|+ ..-|--..-.-...|+.-++..+|.. +. -++..-|-.-..-..++|+.++
T Consensus 864 ~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~ 941 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEE 941 (1238)
T ss_pred ccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHH
Confidence 777777777776665 3442 22222222223345666666666653 11 1233444444444455666555
Q ss_pred HHHHHHHHHH---------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHH----HHHHHHhcC
Q 038364 788 AILLFHELLE---------TGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSC----MVDLLGKAG 854 (1076)
Q Consensus 788 Al~l~~~M~~---------~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~----li~~l~r~G 854 (1076)
-+..-++... .|..-+...|....+..-+.+...+|.+...+...-...+-+...|+. ...++...|
T Consensus 942 ~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslg 1021 (1238)
T KOG1127|consen 942 SINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLG 1021 (1238)
T ss_pred HHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhc
Confidence 4433222211 123334456777777777777777777666654432222334444553 334555667
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHH---HHHHHHcCChHHHHHHHHH
Q 038364 855 YLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLM---MNLLAMSNRWEDVERLRHS 931 (1076)
Q Consensus 855 ~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L---~~~y~~~G~~~eA~~~~~~ 931 (1076)
.++.|..-+...+.+.|..+-.+-+.. .-.|+++.+...|++++.+-..+...-+++ ......++.-+.|....-+
T Consensus 1022 efe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe 1100 (1238)
T KOG1127|consen 1022 EFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFE 1100 (1238)
T ss_pred chhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHH
Confidence 777776666555544555544444444 456889999999999998765544433333 3344556667778776666
Q ss_pred HHh
Q 038364 932 MDE 934 (1076)
Q Consensus 932 m~~ 934 (1076)
...
T Consensus 1101 ~~~ 1103 (1238)
T KOG1127|consen 1101 VKS 1103 (1238)
T ss_pred HHH
Confidence 544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00017 Score=78.98 Aligned_cols=266 Identities=13% Similarity=0.025 Sum_probs=170.5
Q ss_pred CccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHH-HHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHH
Q 038364 632 DLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVT-WTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLL 710 (1076)
Q Consensus 632 d~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~t-y~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL 710 (1076)
|+.-...+.+.+...|+.++|...|++.... .|+.++ .....-.+.+.|++++.-.+...+.... +-...-|..-+
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 3344455555666666666666666654432 222111 1111223455666666666666554321 11122222222
Q ss_pred HHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHH
Q 038364 711 QTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKE 787 (1076)
Q Consensus 711 ~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~ 787 (1076)
......++++.|..+-+..++.. +.++..+-.-...+...|+.++|.-.|+.... -+..+|..|+.+|...|+..|
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 23334556666666666655521 12333444445667778999999999986543 467899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHH
Q 038364 788 AILLFHELLETGFQPDAITFTALL-AACKN-SGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIR 864 (1076)
Q Consensus 788 Al~l~~~M~~~g~~Pd~~t~~~ll-~a~~~-~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~ 864 (1076)
|..+-+..... +.-+..+...+- ..|.- .-.-++|.+++++-. .+.|+ ....+.+..++.+.|+.+++..+++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 99887776552 223333433331 12222 223477888887764 45676 4466778889999999999999998
Q ss_pred hC-CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC
Q 038364 865 TM-PFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 865 ~m-~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
+. ...||...-+.|.+..+..+.+.+|...|..++.++|++
T Consensus 463 ~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 463 KHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 86 577999999999999999999999999999999999987
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.5e-05 Score=80.89 Aligned_cols=353 Identities=10% Similarity=0.025 Sum_probs=226.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCCC-CHhHHHHHHHHHHhcCC--hHH-------------HHHHHHHHHHcCC-----
Q 038364 571 TSLMDMYVKNDCLQNAQEVFDNMKNR-NIVAWNSLISGYCFKGL--FVN-------------AKKMLNQMEEEEI----- 629 (1076)
Q Consensus 571 ~aLi~~y~k~g~~~~A~~lf~~m~~~-d~~~~n~lI~~~~~~g~--~~~-------------A~~lf~~M~~~g~----- 629 (1076)
.-.+.+|...++-+.|.....+.+.. ...--|.|+.-+.++|- .++ |++.+.-..+.++
T Consensus 101 r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~ 180 (564)
T KOG1174|consen 101 RRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEI 180 (564)
T ss_pred HHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhh
Confidence 34566677777777787777777653 23333444443333331 111 1222222222222
Q ss_pred ----------CCCccchhhhhhhhh--hcCChhHHHHHHHHhHhc-CCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhh
Q 038364 630 ----------KPDLVSWNSLVSGYS--IWGQSKEALVIIHHMKNS-GIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQ 696 (1076)
Q Consensus 630 ----------~pd~~t~~~Li~~y~--k~g~~~~A~~lf~~m~~~-gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~ 696 (1076)
.|+..+...-+.+++ ..++...|...|-.+... -+.-|+.....+.+.+...|+.++|...|++.+.
T Consensus 181 ~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~ 260 (564)
T KOG1174|consen 181 NSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC 260 (564)
T ss_pred hhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh
Confidence 222222333344443 345556666665555542 3455677788999999999999999999998864
Q ss_pred cCCCCChhh----HHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCC---Ch
Q 038364 697 EDIKPNSTT----MSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANK---TL 769 (1076)
Q Consensus 697 ~gi~pd~~t----~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~---d~ 769 (1076)
+.|+.++ |..|| ...|+.+....+...+.... ......|-.-........+.+.|..+-++..+- ++
T Consensus 261 --~dpy~i~~MD~Ya~LL---~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~ 334 (564)
T KOG1174|consen 261 --ANPDNVEAMDLYAVLL---GQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNH 334 (564)
T ss_pred --CChhhhhhHHHHHHHH---HhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccc
Confidence 4565443 33333 45677777777766665431 111222222223334456777888777766543 44
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHH-
Q 038364 770 ASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMV- 847 (1076)
Q Consensus 770 ~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li- 847 (1076)
..+-.-...+.+.|+.++|.-.|+..+. +.|.. ..|..|+..|...|.+.||.-.-+...+. +..+..+...+.
T Consensus 335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~ 410 (564)
T KOG1174|consen 335 EALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGT 410 (564)
T ss_pred hHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcc
Confidence 4555555788899999999999999887 56544 68999999999999999988766555432 222333333331
Q ss_pred HHHH-hcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHH
Q 038364 848 DLLG-KAGYLDEAWDFIRTM-PFKPDAT-IWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWED 924 (1076)
Q Consensus 848 ~~l~-r~G~l~eA~~l~~~m-~~~pd~~-~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~e 924 (1076)
+.+. ..---++|.+++++. .++|+-. ..+.+...|...|..+.++.++++.+...|++ ...+.|++++...+.+.+
T Consensus 411 ~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~ 489 (564)
T KOG1174|consen 411 LVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQK 489 (564)
T ss_pred eeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHH
Confidence 2222 223457899999885 6788755 55666677999999999999999999999875 678899999999999999
Q ss_pred HHHHHHHHHh
Q 038364 925 VERLRHSMDE 934 (1076)
Q Consensus 925 A~~~~~~m~~ 934 (1076)
|.+.+.....
T Consensus 490 am~~y~~ALr 499 (564)
T KOG1174|consen 490 AMEYYYKALR 499 (564)
T ss_pred HHHHHHHHHh
Confidence 9999988744
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=4e-06 Score=93.77 Aligned_cols=208 Identities=11% Similarity=-0.044 Sum_probs=134.2
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHc
Q 038364 706 MSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIY 782 (1076)
Q Consensus 706 ~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~ 782 (1076)
|..+-..+...|+.+.|...+..+++. -..+...|+.+...|...|++++|.+.|++..+ .+...|..+...+...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l-~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALAL-RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 333444445555555555555555552 122456777888888888888888888887654 2456788888888889
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHH--HH
Q 038364 783 GNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDE--AW 860 (1076)
Q Consensus 783 g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~e--A~ 860 (1076)
|++++|++.|++..+ ..|+..........+...++.++|.+.|.+... ...|+... ..++.. ..|++++ +.
T Consensus 146 g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~-~~~~~~--~lg~~~~~~~~ 218 (296)
T PRK11189 146 GRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDKEQWG-WNIVEF--YLGKISEETLM 218 (296)
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCccccH-HHHHHH--HccCCCHHHHH
Confidence 999999999999887 466554222222224456789999999876543 22333322 233333 3444433 33
Q ss_pred HHHHhC-CC----CC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCC-CCchhHHHHHHHHHHcCC
Q 038364 861 DFIRTM-PF----KP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEP-CNSANYNLMMNLLAMSNR 921 (1076)
Q Consensus 861 ~l~~~m-~~----~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P-~~~~~y~~L~~~y~~~G~ 921 (1076)
+.+.+- .. .| ....|..+...+...|++++|+..|+++++++| +..++-..++.+....++
T Consensus 219 ~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 219 ERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 333221 11 12 335799999999999999999999999999996 666666666666554444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.5e-05 Score=89.67 Aligned_cols=291 Identities=13% Similarity=0.110 Sum_probs=141.8
Q ss_pred HHHHhCCChHHHHHHHHhcCC--CChhHH-HHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-----
Q 038364 439 SMYSRNNKLELATRVFDSMKD--HNLSSW-NSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTH----- 510 (1076)
Q Consensus 439 ~~y~k~g~~~~A~~lf~~m~~--~d~~s~-n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~----- 510 (1076)
..+...|+.++|.+.++.-.. .|..+| ......+.+.|+.++|...++.+.+.++. |..-|..+..+....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhccccc
Confidence 344566777777777765432 243333 34445566677777777777777766543 444444444444222
Q ss_pred CChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCch-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHH
Q 038364 511 GSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLL-KYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEV 589 (1076)
Q Consensus 511 g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~-~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~l 589 (1076)
...+...++++++...- |.......+.-.+.....+ ..+.......++.|++ .+++.|-..|......+-..++
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 24455566666665554 4333332221111111111 2233334444444543 2344455555433333333333
Q ss_pred HhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC----------CCCCcc--chhhhhhhhhhcCChhHHHHHHH
Q 038364 590 FDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEE----------IKPDLV--SWNSLVSGYSIWGQSKEALVIIH 657 (1076)
Q Consensus 590 f~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g----------~~pd~~--t~~~Li~~y~k~g~~~~A~~lf~ 657 (1076)
+.... ..+...+ -.|... ++.-+...|.+.|++++|+++.+
T Consensus 166 ~~~~~---------------------------~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id 218 (517)
T PF12569_consen 166 VEEYV---------------------------NSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYID 218 (517)
T ss_pred HHHHH---------------------------HhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 32221 0000000 011221 22333444555666666666666
Q ss_pred HhHhcCCCCc-hHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCC
Q 038364 658 HMKNSGIYPN-VVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIK 736 (1076)
Q Consensus 658 ~m~~~gi~pd-~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~ 736 (1076)
+..++ .|+ +..|..-...|-+.|++.+|.+.++..+... .-|...-+.....+.+.|++++|.++.....+.+..|
T Consensus 219 ~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 219 KAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 55554 333 3455555555666666666666666555432 2244444555555556666666666666655544322
Q ss_pred C--------hhhHHHHHHHHhhcCCHHHHHHHHHhcC
Q 038364 737 D--------AYVATGLIDMYSKSGNLKSAREVFRKSA 765 (1076)
Q Consensus 737 d--------~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 765 (1076)
- ......-..+|.+.|++..|.+-|..+.
T Consensus 296 ~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 296 LSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1 1122445667777888877777665443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=5e-06 Score=101.42 Aligned_cols=177 Identities=13% Similarity=0.019 Sum_probs=102.2
Q ss_pred CChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHH
Q 038364 445 NKLELATRVFDSMKD---HNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLR 521 (1076)
Q Consensus 445 g~~~~A~~lf~~m~~---~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~ 521 (1076)
+++++|...+++..+ .+...|..+-..+...|++++|...|++..+.++. +...|..+...+...|++++|+..++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 345666666665532 24445666666666677777777777777666543 45566666667777777777777777
Q ss_pred HHHhcCCCCCcc-cHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCC---C
Q 038364 522 GMQSLGFRPNGS-SVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNR---N 597 (1076)
Q Consensus 522 ~m~~~gi~pd~~-t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~---d 597 (1076)
+..+.. |+.. .+...+..+...|++++|...+..+.+...+.+...+..+...|...|+.++|...+.++... +
T Consensus 397 ~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~ 474 (553)
T PRK12370 397 ECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITG 474 (553)
T ss_pred HHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchh
Confidence 766654 4432 122223334445566666666655554432223444555666677777777777777665542 2
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038364 598 IVAWNSLISGYCFKGLFVNAKKMLNQMEE 626 (1076)
Q Consensus 598 ~~~~n~lI~~~~~~g~~~~A~~lf~~M~~ 626 (1076)
...++.+...|+..| ++|...++.+.+
T Consensus 475 ~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 475 LIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 334455555556555 366665655543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00014 Score=77.91 Aligned_cols=94 Identities=19% Similarity=0.222 Sum_probs=47.9
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHH-HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcC
Q 038364 744 LIDMYSKSGNLKSAREVFRKSAN---KTLASWNCM-IMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLA-ACKNSG 818 (1076)
Q Consensus 744 Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~l-i~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~-a~~~~g 818 (1076)
+..+++..|.+.+|+++|-++.. +|-.+|.+| ..+|.++++++-|.+++-++. -..+..+..-+|. -|-+.+
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~ 475 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKAN 475 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHH
Confidence 55555666666666666655543 334455443 355566666665544433332 2223333333332 366666
Q ss_pred CHHHHHHHHHHhhhcCCCCCCcccH
Q 038364 819 LVEEGWKYFDSMSTDYNIIPTIEHY 843 (1076)
Q Consensus 819 ~~~eA~~~~~~m~~~~g~~p~~~~y 843 (1076)
.+=-|.+.|+.+. ...|+++.|
T Consensus 476 eFyyaaKAFd~lE---~lDP~pEnW 497 (557)
T KOG3785|consen 476 EFYYAAKAFDELE---ILDPTPENW 497 (557)
T ss_pred HHHHHHHhhhHHH---ccCCCcccc
Confidence 6666666666554 235555544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1e-06 Score=93.07 Aligned_cols=154 Identities=14% Similarity=0.124 Sum_probs=94.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCH
Q 038364 778 GFAIYGNGKEAILLFHELLETGFQPDAI-TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYL 856 (1076)
Q Consensus 778 ~~~~~g~~~~Al~l~~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l 856 (1076)
.+-..++.++|+++|++..+ ..|+.+ ...++...|...++.+-|..++.++..- |+ -+++.|+.+.-.+.-++++
T Consensus 299 i~eam~~~~~a~~lYk~vlk--~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLK--LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHh--cCCccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcch
Confidence 33333444444444444443 222221 2233333344444445555554444432 32 1233444444444444445
Q ss_pred HHHHHHHHhCC---CCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHH
Q 038364 857 DEAWDFIRTMP---FKPD--ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHS 931 (1076)
Q Consensus 857 ~eA~~l~~~m~---~~pd--~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~ 931 (1076)
|-++.-|++.. ..|+ ..+|..|.......||+..|.+.|+-++.-+|++.++|+.|+-+-.+.|+.++|..++..
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 44444444431 1233 347888888888889999999999999999999999999999999999999999999998
Q ss_pred HHhC
Q 038364 932 MDEV 935 (1076)
Q Consensus 932 m~~~ 935 (1076)
.+..
T Consensus 455 A~s~ 458 (478)
T KOG1129|consen 455 AKSV 458 (478)
T ss_pred hhhh
Confidence 8654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.3e-06 Score=87.15 Aligned_cols=161 Identities=14% Similarity=0.104 Sum_probs=137.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHH
Q 038364 772 WNCMIMGFAIYGNGKEAILLFHELLETGFQPDAI-TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDL 849 (1076)
Q Consensus 772 ~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~ 849 (1076)
.-.+.-+|.+.|+...|.+-+++.++ ..|+.. ++..+...|.+.|..+.|.+.|+...+ +.|+ ..+.|....-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 34567788899999999999999888 577764 788888889999999999999988864 4565 5678888889
Q ss_pred HHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHH
Q 038364 850 LGKAGYLDEAWDFIRTMPFKPD----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDV 925 (1076)
Q Consensus 850 l~r~G~l~eA~~l~~~m~~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA 925 (1076)
+|..|++++|...|++....|+ ..+|..+..+-.+.|+.+.|+..+++.++++|+++...-.+.+...+.|++-+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999998743332 457888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 038364 926 ERLRHSMDEVGV 937 (1076)
Q Consensus 926 ~~~~~~m~~~g~ 937 (1076)
.-.++....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999999877663
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00086 Score=77.82 Aligned_cols=246 Identities=13% Similarity=0.026 Sum_probs=149.6
Q ss_pred CCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChHHHHHHHH
Q 038364 410 GAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKD---HNLSSWNSMISSYTGLGYVDVAWSLFN 486 (1076)
Q Consensus 410 g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~lI~~~~~~g~~~~A~~lf~ 486 (1076)
+.+..|....+.+++. +.....+....--.+...|+-++|......-.. ++-++|..+--.+-...++++|++.|+
T Consensus 21 kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 4455555555555552 222222222222223455777777766655433 455678877777777778888888888
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC-cccHHHHHHHHHhcCchHHHHHHHHHHHHcCC-C
Q 038364 487 KMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPN-GSSVSVVLQAVTELRLLKYGRESHGYILRNGL-D 564 (1076)
Q Consensus 487 ~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~-~ 564 (1076)
.....+.. |...|.-+--.-++.++++..........+.. |. ...|.....+.--.|+...|..+.++..+... .
T Consensus 100 nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 100 NALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 88776655 77777777777777788877777776666543 43 34455666666677888888888887776652 3
Q ss_pred CchhHHHHHH------HHHHhCCCHHHHHHHHhhcCCC--CH-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccc
Q 038364 565 YDLYVGTSLM------DMYVKNDCLQNAQEVFDNMKNR--NI-VAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVS 635 (1076)
Q Consensus 565 ~d~~v~~aLi------~~y~k~g~~~~A~~lf~~m~~~--d~-~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t 635 (1076)
|+...+.-.. ....+.|..+.|.+.+...... |- ..--+...-+.+.++.++|..++..++.. .||.+-
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~ 254 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLD 254 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHH
Confidence 4444333222 2235677778887777665431 22 22334556677888888888888888876 477776
Q ss_pred hhhhhhh-hhhcCChhHHH-HHHHHhHh
Q 038364 636 WNSLVSG-YSIWGQSKEAL-VIIHHMKN 661 (1076)
Q Consensus 636 ~~~Li~~-y~k~g~~~~A~-~lf~~m~~ 661 (1076)
|...+.. +.+--+.-++. .+|....+
T Consensus 255 Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 255 YYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 6554433 33333334444 55655543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.4e-06 Score=87.71 Aligned_cols=228 Identities=14% Similarity=0.046 Sum_probs=160.7
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHhhcCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccch-hhhhhh
Q 038364 566 DLYVGTSLMDMYVKNDCLQNAQEVFDNMKN--RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSW-NSLVSG 642 (1076)
Q Consensus 566 d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~--~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~-~~Li~~ 642 (1076)
|-.--+.+..+|.+.|.+.+|++.|+.-.+ +-+.||-.|-..|.+..+++.|+.+|.+-.+. .|-.+|| ..+...
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHH
Confidence 334446778888888999999888877653 67778888888888888999999888887755 5777776 345566
Q ss_pred hhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhH
Q 038364 643 YSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNG 722 (1076)
Q Consensus 643 y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a 722 (1076)
+-..++.++|.++++...+.. ..++....++..+|.-.++++-|+.+++++.+.|+. +...|..+--+|.-.+.++.+
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhh
Confidence 667788888888888877631 346667777778888888888888888888887764 455677777777777788877
Q ss_pred HHHHHHHHHcCCCCC--hhhHHHHHHHHhhcCCHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038364 723 KEIHCLCLKNGFIKD--AYVATGLIDMYSKSGNLKSAREVFRKSANKT---LASWNCMIMGFAIYGNGKEAILLFHELLE 797 (1076)
Q Consensus 723 ~~i~~~~~~~g~~~d--~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d---~~s~n~li~~~~~~g~~~~Al~l~~~M~~ 797 (1076)
..-+......--.|+ ..+|-.|.......|++.-|.+.|+-....| ..++|.|.-.-.+.|+.++|..++.....
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 777776665433333 3455556666667777777777776554322 24555555555556666666666555544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.0015 Score=85.39 Aligned_cols=360 Identities=11% Similarity=0.010 Sum_probs=193.5
Q ss_pred HHhCCCHHHHHHHHhhcCCCCHhH--HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHH
Q 038364 577 YVKNDCLQNAQEVFDNMKNRNIVA--WNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALV 654 (1076)
Q Consensus 577 y~k~g~~~~A~~lf~~m~~~d~~~--~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~ 654 (1076)
|...|++.+|..........+... ...........|+.+.+...+..+.......+..........+...|++++|..
T Consensus 351 ~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~ 430 (903)
T PRK04841 351 WLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNT 430 (903)
T ss_pred HHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHH
Confidence 445555555555555444332111 111122334456666655555554221111122222233334455677777777
Q ss_pred HHHHhHhc--CC----CCch--HHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCCh----hhHHHHHHHHhcCCCchhH
Q 038364 655 IIHHMKNS--GI----YPNV--VTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNS----TTMSSLLQTCGGLGLLQNG 722 (1076)
Q Consensus 655 lf~~m~~~--gi----~pd~--~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~----~t~~~lL~a~~~~g~~~~a 722 (1076)
++....+. .. .+.. .....+...+...|++++|...+++....-...+. .....+...+...|+++.|
T Consensus 431 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A 510 (903)
T PRK04841 431 LLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARA 510 (903)
T ss_pred HHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 76665431 00 0111 11112223445677777887777776542111111 2233344445567788877
Q ss_pred HHHHHHHHHcCCC-----CChhhHHHHHHHHhhcCCHHHHHHHHHhcCC-------CC----hHHHHHHHHHHHHcCCHH
Q 038364 723 KEIHCLCLKNGFI-----KDAYVATGLIDMYSKSGNLKSAREVFRKSAN-------KT----LASWNCMIMGFAIYGNGK 786 (1076)
Q Consensus 723 ~~i~~~~~~~g~~-----~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-------~d----~~s~n~li~~~~~~g~~~ 786 (1076)
...+.......-. ........+...+...|++++|...+++... .+ ...+..+...+...|+++
T Consensus 511 ~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~ 590 (903)
T PRK04841 511 LAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLD 590 (903)
T ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHH
Confidence 7777666542111 1123445566677778888888877765332 11 123344555666678888
Q ss_pred HHHHHHHHHHHC--CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccH-----HHHHHHHHhcCCHH
Q 038364 787 EAILLFHELLET--GFQPDA--ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHY-----SCMVDLLGKAGYLD 857 (1076)
Q Consensus 787 ~Al~l~~~M~~~--g~~Pd~--~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y-----~~li~~l~r~G~l~ 857 (1076)
+|...+++.... ...+.. ..+..+.......|+.++|.+.++.......-......+ ......+...|+.+
T Consensus 591 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 670 (903)
T PRK04841 591 EAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKE 670 (903)
T ss_pred HHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHH
Confidence 888888776542 112222 233334445677888888888887764321111111111 11224445678888
Q ss_pred HHHHHHHhCCCC--CCH----HHHHHHHHHHHHcCCchHHHHHHHHHhcCC------CCCchhHHHHHHHHHHcCChHHH
Q 038364 858 EAWDFIRTMPFK--PDA----TIWGALLGSCRIHGHLEYAEIASRRLFKLE------PCNSANYNLMMNLLAMSNRWEDV 925 (1076)
Q Consensus 858 eA~~l~~~m~~~--pd~----~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~------P~~~~~y~~L~~~y~~~G~~~eA 925 (1076)
+|.+++...... ... ..+..+..++...|+.++|...++++++.. +.....+..++.+|.+.|+.++|
T Consensus 671 ~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A 750 (903)
T PRK04841 671 AAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEA 750 (903)
T ss_pred HHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 888888765311 111 123455566778888899988888877642 12234577888888999999999
Q ss_pred HHHHHHHHhCC
Q 038364 926 ERLRHSMDEVG 936 (1076)
Q Consensus 926 ~~~~~~m~~~g 936 (1076)
.+.+.+..+..
T Consensus 751 ~~~L~~Al~la 761 (903)
T PRK04841 751 QRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHh
Confidence 88888876543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00067 Score=76.99 Aligned_cols=171 Identities=13% Similarity=0.140 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHhhc-CCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCC-ChhhHHHHHHHHhhcCCHHHHHHHH
Q 038364 684 YRESLKFFIQMQQE-DIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIK-DAYVATGLIDMYSKSGNLKSAREVF 761 (1076)
Q Consensus 684 ~~eAl~l~~~m~~~-gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~-d~~~~~~Li~~y~k~G~~~~A~~vf 761 (1076)
.+...+.++++... .+.| ..+|...++...+..-++.|+.+|..+.+.+..+ +++++++++.-||. ++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 44444555555432 2223 2456666666666667777777777777766655 66777777776653 5666777777
Q ss_pred HhcCC--CChHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC-
Q 038364 762 RKSAN--KTLASW-NCMIMGFAIYGNGKEAILLFHELLETGFQPDA--ITFTALLAACKNSGLVEEGWKYFDSMSTDYN- 835 (1076)
Q Consensus 762 ~~m~~--~d~~s~-n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~--~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g- 835 (1076)
+.... .|...| +..+.-+...++-..|..+|++....++.||. ..|..+|.-=+.-|++....++-+++...+.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 65443 243333 45566666667777777777777766666655 3566666666666777766666666555433
Q ss_pred -CCCCcccHHHHHHHHHhcCCH
Q 038364 836 -IIPTIEHYSCMVDLLGKAGYL 856 (1076)
Q Consensus 836 -~~p~~~~y~~li~~l~r~G~l 856 (1076)
..+...+-..+++.|+-.++.
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccc
Confidence 333334444555555544443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.8e-05 Score=84.24 Aligned_cols=217 Identities=13% Similarity=0.055 Sum_probs=153.8
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHH----------HHHH
Q 038364 706 MSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLAS----------WNCM 775 (1076)
Q Consensus 706 ~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s----------~n~l 775 (1076)
...+.++.-+..+++.+.+-+...++.. .++..++.....|...|...+....-+...+.+-.. ...+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3455666666777788888887777743 666667777888888888877776665544433222 2234
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcc-cHHHHHHHHHhcC
Q 038364 776 IMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIE-HYSCMVDLLGKAG 854 (1076)
Q Consensus 776 i~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~-~y~~li~~l~r~G 854 (1076)
..+|.+.++++.|+..|++....-..||..+- ....+++.+..+... -+.|... --..-...+.+.|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~---------lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLSK---------LKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHH---------HHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhcc
Confidence 45778888999999999998776556554322 223444444443332 2334321 1112256778899
Q ss_pred CHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 855 YLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 855 ~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
++.+|.+.+.++ . .+-|...|.....+|.+.|++..|+.-.+..++++|+....|.--+-++....+|++|.+.+.+-
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887 2 34466788888888899999999999999999999999999998899999999999999999887
Q ss_pred HhCC
Q 038364 933 DEVG 936 (1076)
Q Consensus 933 ~~~g 936 (1076)
.+..
T Consensus 453 le~d 456 (539)
T KOG0548|consen 453 LELD 456 (539)
T ss_pred HhcC
Confidence 6654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.7e-06 Score=89.61 Aligned_cols=251 Identities=14% Similarity=0.090 Sum_probs=147.5
Q ss_pred hhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhH
Q 038364 643 YSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNG 722 (1076)
Q Consensus 643 y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a 722 (1076)
+...|++..+..-.+ .....-..+.....-+.+++...|+.+.++. ++... -.|.......+...+....+-+..
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchHHH
Confidence 344566666665444 2222222234445556677777887765443 33332 256665555555555443333333
Q ss_pred HHHHHHHHHcCCC-CChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 038364 723 KEIHCLCLKNGFI-KDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQ 801 (1076)
Q Consensus 723 ~~i~~~~~~~g~~-~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~ 801 (1076)
..-+...+..... .+..+......+|...|++++|.+++.+. .+.......+..|.+.++.+.|.+.++.|.+ +.
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--ID 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cC
Confidence 3333222222222 23444455567788899999999888765 4555666678888899999999999999987 44
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 038364 802 PDAITFTALLAACKN----SGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIW 875 (1076)
Q Consensus 802 Pd~~t~~~ll~a~~~----~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~ 875 (1076)
.|.. ..-+..++.. .+.+.+|..+|+++..+ ..+++.+.+.+..+....|+++||.+++++. ...| |..++
T Consensus 162 eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 EDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred CcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 5543 3334443221 23578888888888764 3456677777777888888888888877774 3333 44466
Q ss_pred HHHHHHHHHcCCc-hHHHHHHHHHhcCCCCC
Q 038364 876 GALLGSCRIHGHL-EYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 876 ~~Ll~a~~~~g~~-e~A~~~~~~l~~l~P~~ 905 (1076)
..++-.+...|+. +.+.+...++....|++
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 6666666666766 56667777777777765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00011 Score=87.03 Aligned_cols=298 Identities=17% Similarity=0.123 Sum_probs=136.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCccch-hhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHH-HHHHHHHHhcC--
Q 038364 606 SGYCFKGLFVNAKKMLNQMEEEEIKPDLVSW-NSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVT-WTSLISGSLQN-- 681 (1076)
Q Consensus 606 ~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~-~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~t-y~~LI~~~~~~-- 681 (1076)
..+...|++++|++.+.+-... .+|..++ ......+.+.|+.++|..++..+.++ .|+... |..+..+....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcc
Confidence 3456778888888888664432 3454444 45566777778888888888888776 344444 34444444222
Q ss_pred ---CChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCc-hhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHH
Q 038364 682 ---ENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLL-QNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSA 757 (1076)
Q Consensus 682 ---g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~-~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A 757 (1076)
...+...++++++... -|.......+.-.+..-..+ ..+.......++.|++ .+++.|-..|....+.+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 2455666677766543 24333333222222211111 1233333444444432 3445555555544444433
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 038364 758 REVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAI--TFTALLAACKNSGLVEEGWKYFDSMSTDYN 835 (1076)
Q Consensus 758 ~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~--t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g 835 (1076)
.+++...... ...++.....- ....-.|... ++..+...|.+.|++++|.++.++..+
T Consensus 163 ~~l~~~~~~~-----------l~~~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--- 222 (517)
T PF12569_consen 163 ESLVEEYVNS-----------LESNGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--- 222 (517)
T ss_pred HHHHHHHHHh-----------hcccCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---
Confidence 3333322100 00000000000 0000112221 222223334555555555555555543
Q ss_pred CCCC-cccHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCC--CCC-----
Q 038364 836 IIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTMP-F-KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLE--PCN----- 905 (1076)
Q Consensus 836 ~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m~-~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~--P~~----- 905 (1076)
..|+ ++.|..-...|-+.|++++|.+.++... . ..|-.+-+-....+.+.|++++|+..+.....-+ |..
T Consensus 223 htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~m 302 (517)
T PF12569_consen 223 HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDM 302 (517)
T ss_pred cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHH
Confidence 2344 4455555555555555555555555542 1 2233333333444455555555555555443322 111
Q ss_pred --chhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 906 --SANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 906 --~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
.-...--+..|.+.|++..|++.+...
T Consensus 303 Qc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 303 QCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 011223456666666666666655544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00021 Score=74.99 Aligned_cols=411 Identities=12% Similarity=0.049 Sum_probs=212.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-CcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchh-HHHHHHHHH
Q 038364 500 WNCLLSGHFTHGSYQNVLTLLRGMQSLGFRP-NGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLY-VGTSLMDMY 577 (1076)
Q Consensus 500 y~~Li~~~~~~g~~~~Al~l~~~m~~~gi~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~-v~~aLi~~y 577 (1076)
+++.+..+.+..++++|++++..-.++. | +...++.+-.++....++..|...++++-..-.+.... .| -...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY--~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY--QAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH--HHHHH
Confidence 3344444444445555555544444433 3 33333344444444555555555554444332221111 11 11234
Q ss_pred HhCCCHHHHHHHHhhcCCC-CHhHHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHH
Q 038364 578 VKNDCLQNAQEVFDNMKNR-NIVAWNSLIS--GYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALV 654 (1076)
Q Consensus 578 ~k~g~~~~A~~lf~~m~~~-d~~~~n~lI~--~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~ 654 (1076)
.+.+.+.+|.++...|.+. +...-..-+. ..-..+++..+..++++...+| +..+.+.......+.|+.++|.+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 4567778888888887763 2221111111 2234677777888887765433 44555555555678999999999
Q ss_pred HHHHhHh-cCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhH-HHHHHHHhcCCCchhHHHHHHHHHHc
Q 038364 655 IIHHMKN-SGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTM-SSLLQTCGGLGLLQNGKEIHCLCLKN 732 (1076)
Q Consensus 655 lf~~m~~-~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~-~~lL~a~~~~g~~~~a~~i~~~~~~~ 732 (1076)
-|+...+ .|.. ....||.-+ +..+.|+.+.|+++..++.+.|++-.+..= ...... .....+..-..++...+
T Consensus 166 kFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~teg-iDvrsvgNt~~lh~Sal-- 240 (459)
T KOG4340|consen 166 KFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEG-IDVRSVGNTLVLHQSAL-- 240 (459)
T ss_pred HHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc-CchhcccchHHHHHHHH--
Confidence 9999887 4444 456677554 445678899999999999888775322110 000000 00000111111111111
Q ss_pred CCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 038364 733 GFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANK-----TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITF 807 (1076)
Q Consensus 733 g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~-----d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~ 807 (1076)
+..+|.-...+.+.|+.+.|.+.+-.|+.+ |++|...|.-.- ..+++.+..+-+.-+.+.+- -...||
T Consensus 241 -----~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETF 313 (459)
T KOG4340|consen 241 -----VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETF 313 (459)
T ss_pred -----HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHH
Confidence 123344445677899999999999999854 677775543222 23445555555555555422 234689
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCC-CCCcccHHHHHHHHH-hcCCHHHHHHHHHhCCCCCCHHHHHHHHHH-HHH
Q 038364 808 TALLAACKNSGLVEEGWKYFDSMSTDYNI-IPTIEHYSCMVDLLG-KAGYLDEAWDFIRTMPFKPDATIWGALLGS-CRI 884 (1076)
Q Consensus 808 ~~ll~a~~~~g~~~eA~~~~~~m~~~~g~-~p~~~~y~~li~~l~-r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a-~~~ 884 (1076)
..++-.|++..-++.|..++.+-... -. -.+...|+ +++++. -.-..++|++-++.+...--...-...+.. -.+
T Consensus 314 ANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r 391 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEAR 391 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988876542110 00 01122222 334433 334556666555443100000000000111 112
Q ss_pred cCCchHH----HHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 885 HGHLEYA----EIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 885 ~g~~e~A----~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
+.+-+++ ++-+++.+++- .......+++|.+..++..++++|+...+
T Consensus 392 ~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 392 HNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred hcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 2222222 23333333321 12344556778888888899998887644
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00029 Score=75.44 Aligned_cols=207 Identities=16% Similarity=0.148 Sum_probs=136.3
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCCCccchh-hhhhhhhhcCC
Q 038364 573 LMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLI---SGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWN-SLVSGYSIWGQ 648 (1076)
Q Consensus 573 Li~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI---~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~-~Li~~y~k~g~ 648 (1076)
|-..+.-.|++.+|..-|....+-|+..|-++- ..|...|+..-|+.=|....+. +||-..-. .-...+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhccc
Confidence 445556678888898888888887777776654 4677788888888888777765 56643221 11234568899
Q ss_pred hhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHH
Q 038364 649 SKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCL 728 (1076)
Q Consensus 649 ~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~ 728 (1076)
+++|..=|+...++. |+..+ ...++.+ +.+.+++ ......+..+...|+...+......
T Consensus 122 le~A~~DF~~vl~~~--~s~~~---~~eaqsk-------l~~~~e~---------~~l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHE--PSNGL---VLEAQSK-------LALIQEH---------WVLVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred HHHHHHHHHHHHhcC--CCcch---hHHHHHH-------HHhHHHH---------HHHHHHHHHHhcCCchhhHHHHHHH
Confidence 999999998887752 22110 0011111 1111111 1223344455667888888888888
Q ss_pred HHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhc---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 038364 729 CLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKS---ANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAI 805 (1076)
Q Consensus 729 ~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m---~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~ 805 (1076)
+++. ..+|...+..-...|...|+...|+.-.+.. ...+....--+-..+-.-|+.+.++...++-++ +.||.-
T Consensus 181 llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK 257 (504)
T KOG0624|consen 181 LLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHK 257 (504)
T ss_pred HHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchh
Confidence 8774 3467888888888888888888887665543 345556666666777788888888888888777 678874
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.8e-07 Score=63.98 Aligned_cols=32 Identities=34% Similarity=0.606 Sum_probs=22.8
Q ss_pred CCCCchHHHHHHHHHHhcCCChhHHHHHHHHH
Q 038364 663 GIYPNVVTWTSLISGSLQNENYRESLKFFIQM 694 (1076)
Q Consensus 663 gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m 694 (1076)
|+.||.+|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777766
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.023 Score=74.27 Aligned_cols=368 Identities=14% Similarity=-0.010 Sum_probs=170.0
Q ss_pred HHHHHhCCChHHHHHHHHhcCCCChhH--HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhh
Q 038364 438 ISMYSRNNKLELATRVFDSMKDHNLSS--WNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQN 515 (1076)
Q Consensus 438 i~~y~k~g~~~~A~~lf~~m~~~d~~s--~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~ 515 (1076)
...|...|++.+|..........+... ...........|+.+.+.+.+..+.......+..........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 344556677776666665554432221 111122344567777777777666322111122223334445566778888
Q ss_pred HHHHHHHHHhcCCCCC---cccHH-----HHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHH
Q 038364 516 VLTLLRGMQSLGFRPN---GSSVS-----VVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQ 587 (1076)
Q Consensus 516 Al~l~~~m~~~gi~pd---~~t~~-----~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~ 587 (1076)
|..++......--..+ ..... ..-..+...|+++.+...+....+.-...+...
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------ 489 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYS------------------ 489 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHH------------------
Confidence 8887776644210000 00000 001112234444444444444333211101000
Q ss_pred HHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---C--CccchhhhhhhhhhcCChhHHHHHHHHhHh-
Q 038364 588 EVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIK---P--DLVSWNSLVSGYSIWGQSKEALVIIHHMKN- 661 (1076)
Q Consensus 588 ~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~---p--d~~t~~~Li~~y~k~g~~~~A~~lf~~m~~- 661 (1076)
-...++.+...+...|++++|...+.+.....-. + ...++..+...+...|++++|...+++..+
T Consensus 490 ---------~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 490 ---------RIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred ---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 0012233334444455555555555554322100 0 011223334445555666666665555433
Q ss_pred ---cCCC--C-chHHHHHHHHHHhcCCChhHHHHHHHHHhhc--CCCCC--hhhHHHHHHHHhcCCCchhHHHHHHHHHH
Q 038364 662 ---SGIY--P-NVVTWTSLISGSLQNENYRESLKFFIQMQQE--DIKPN--STTMSSLLQTCGGLGLLQNGKEIHCLCLK 731 (1076)
Q Consensus 662 ---~gi~--p-d~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~--gi~pd--~~t~~~lL~a~~~~g~~~~a~~i~~~~~~ 731 (1076)
.+.. + ....+..+...+...|++++|...+.+.... ...+. ...+..+.......|+.+.|...+..+..
T Consensus 561 ~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 561 IEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 0 1122333444455556666666666655431 11111 12222233344556666666666555433
Q ss_pred cCCCC-Chh-----hHHHHHHHHhhcCCHHHHHHHHHhcCCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 038364 732 NGFIK-DAY-----VATGLIDMYSKSGNLKSAREVFRKSANKTL-------ASWNCMIMGFAIYGNGKEAILLFHELLET 798 (1076)
Q Consensus 732 ~g~~~-d~~-----~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~-------~s~n~li~~~~~~g~~~~Al~l~~~M~~~ 798 (1076)
..-.. ... ........+...|+.+.|.+.+.....+.. ..+..+..++...|+.++|..++++....
T Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 641 LLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 21000 000 001122344557788888877766543221 11344566677788888888877776542
Q ss_pred ----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 038364 799 ----GFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMST 832 (1076)
Q Consensus 799 ----g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~ 832 (1076)
|..++. .+...+..++...|+.++|...+.+..+
T Consensus 721 ~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 721 ARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333322 2344445556777777777777777654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00058 Score=78.64 Aligned_cols=194 Identities=12% Similarity=-0.063 Sum_probs=93.2
Q ss_pred HHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHh
Q 038364 743 GLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGF-QPDA--ITFTALLAACKN 816 (1076)
Q Consensus 743 ~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~-~Pd~--~t~~~ll~a~~~ 816 (1076)
.+...+...|++++|.+.+++..+ .+...+..+...|...|+.++|+.++++.....- .|+. ..|..+...+..
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 344455555555555555554432 2334445555555555666666655555554211 1221 123334444555
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCcc-c--HHHHHHHHHhcCCHHHHHHH---HHh---C-CCCCCHHHHHHHHHHHHHcC
Q 038364 817 SGLVEEGWKYFDSMSTDYNIIPTIE-H--YSCMVDLLGKAGYLDEAWDF---IRT---M-PFKPDATIWGALLGSCRIHG 886 (1076)
Q Consensus 817 ~g~~~eA~~~~~~m~~~~g~~p~~~-~--y~~li~~l~r~G~l~eA~~l---~~~---m-~~~pd~~~~~~Ll~a~~~~g 886 (1076)
.|+.++|..++++........+... . ...+...+...|..+.+.++ ... . +.............++...|
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 278 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG 278 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC
Confidence 5666666666655432111011110 0 00222222333322222222 111 0 00011112223445556667
Q ss_pred CchHHHHHHHHHhcCC-C--------CCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 887 HLEYAEIASRRLFKLE-P--------CNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 887 ~~e~A~~~~~~l~~l~-P--------~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
+.+.|...++.+.... . .......+.+-++.+.|++++|.+.+....+.+
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7777777776654421 1 123456778888899999999999998876544
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.6e-05 Score=87.81 Aligned_cols=245 Identities=13% Similarity=0.066 Sum_probs=159.2
Q ss_pred HHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHH
Q 038364 677 GSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKS 756 (1076)
Q Consensus 677 ~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~ 756 (1076)
-+.-.|++..++.-.+ .....-..+.....-+.+++...|..+. +...+.+. -.|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~---vl~ei~~~-~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDS---VLSEIKKS-SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHH---HHHHS-TT-SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhH---HHHHhccC-CChhHHHHHHHHHHHhCccchHH
Confidence 3455688888876555 2221112233445556677777776543 33333332 25555555555555544456666
Q ss_pred HHHHHHhcC-CCCh---HHHHHH-HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 038364 757 AREVFRKSA-NKTL---ASWNCM-IMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMS 831 (1076)
Q Consensus 757 A~~vf~~m~-~~d~---~s~n~l-i~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~ 831 (1076)
+..-+++.. +... .++..+ ...+...|++++|++++++- .+.......+..+.+.+++|.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666665543 2211 222222 24455679999999988652 334455566778899999999999999997
Q ss_pred hcCCCCCCcc---cHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCc
Q 038364 832 TDYNIIPTIE---HYSCMVDLLGKAGYLDEAWDFIRTM--PFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 832 ~~~g~~p~~~---~y~~li~~l~r~G~l~eA~~l~~~m--~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~ 906 (1076)
+ +..|.. ...+.+..+.-.+.+.+|..+|+++ ...+++.+.+.+..+....|++++|+.+++++++.+|+++
T Consensus 159 ~---~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 159 Q---IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp C---CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred h---cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 4 344432 2234444444445799999999998 3557888889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCh-HHHHHHHHHHHhC
Q 038364 907 ANYNLMMNLLAMSNRW-EDVERLRHSMDEV 935 (1076)
Q Consensus 907 ~~y~~L~~~y~~~G~~-~eA~~~~~~m~~~ 935 (1076)
.+...++-+..-.|+. +++.+.+.+++..
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 9999999999999998 6788899988654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.4e-06 Score=62.43 Aligned_cols=33 Identities=33% Similarity=0.420 Sum_probs=24.4
Q ss_pred CCCCChHHHHHHHHHHhcCCChHHHHHHHhhcC
Q 038364 324 GFDFDVHLKCALMNFYGKCRDVESANKLFSEVS 356 (1076)
Q Consensus 324 g~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~ 356 (1076)
|+.||+++||+||++|+|.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777764
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.4e-05 Score=80.67 Aligned_cols=180 Identities=11% Similarity=0.014 Sum_probs=119.8
Q ss_pred CChhhHHHHHHHHhhcCCHHHHHHHHHhcCCC---Ch---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----
Q 038364 736 KDAYVATGLIDMYSKSGNLKSAREVFRKSANK---TL---ASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAI---- 805 (1076)
Q Consensus 736 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~---d~---~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~---- 805 (1076)
.....+..+...|.+.|++++|...|++.... +. ..|..+...+.+.|++++|+..++++.+ ..|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHH
Confidence 34556667777888888888888888876542 22 3566777888888888888888888876 344332
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHhhhcCCCCCCcc-cHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH
Q 038364 806 TFTALLAACKNS--------GLVEEGWKYFDSMSTDYNIIPTIE-HYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWG 876 (1076)
Q Consensus 806 t~~~ll~a~~~~--------g~~~eA~~~~~~m~~~~g~~p~~~-~y~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~~ 876 (1076)
++..+..++... |+.++|.+.|+.+.+. .|+.. .+..+.. .+....... ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~----~~~~~~~~~-----------~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKR----MDYLRNRLA-----------GKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHH----HHHHHHHHH-----------HHHH
Confidence 233333344433 6677788888777654 34322 1211111 111111100 0122
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhcCCCCC---chhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 877 ALLGSCRIHGHLEYAEIASRRLFKLEPCN---SANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 877 ~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~---~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
.+...+...|+++.|...++++++..|++ +..+..++.+|.+.|++++|.+.++.+..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45566888999999999999999987765 478999999999999999999999988543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0034 Score=72.26 Aligned_cols=116 Identities=13% Similarity=0.110 Sum_probs=76.5
Q ss_pred CCCHHHHHHHHhhcCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHH
Q 038364 580 NDCLQNAQEVFDNMKN--R-NIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVII 656 (1076)
Q Consensus 580 ~g~~~~A~~lf~~m~~--~-d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf 656 (1076)
.+..+.+.+.++.... + +...+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|...+
T Consensus 93 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l 171 (355)
T cd05804 93 SGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFM 171 (355)
T ss_pred ccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3455555555554222 1 22333445567778888888888888887764 223455677777888888888888888
Q ss_pred HHhHhcCC-CCch--HHHHHHHHHHhcCCChhHHHHHHHHHhh
Q 038364 657 HHMKNSGI-YPNV--VTWTSLISGSLQNENYRESLKFFIQMQQ 696 (1076)
Q Consensus 657 ~~m~~~gi-~pd~--~ty~~LI~~~~~~g~~~eAl~l~~~m~~ 696 (1076)
++..+... .|+. ..|..+...+...|++++|..++++...
T Consensus 172 ~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 172 ESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 87765321 1222 3455677888888999999999888753
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.9e-05 Score=88.73 Aligned_cols=220 Identities=15% Similarity=0.092 Sum_probs=146.7
Q ss_pred HhcCCChhHHHHHHHHHhhcCCCC-ChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHH
Q 038364 678 SLQNENYRESLKFFIQMQQEDIKP-NSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKS 756 (1076)
Q Consensus 678 ~~~~g~~~eAl~l~~~m~~~gi~p-d~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~ 756 (1076)
+.++|++.+|.-.|+..+.. .| +...|.-|-..-+..++-..|...+.+.++ ++|
T Consensus 295 lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP-------------------- 350 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLE--LDP-------------------- 350 (579)
T ss_pred HHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCC--------------------
Confidence 45666666666666666543 23 334454444444444444445555444444 232
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038364 757 AREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQ--------PDAITFTALLAACKNSGLVEEGWKYFD 828 (1076)
Q Consensus 757 A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~--------Pd~~t~~~ll~a~~~~g~~~eA~~~~~ 828 (1076)
.|....-+|...|...|.-.+|+..++.-+....+ ++..+-.. ....+........++|-
T Consensus 351 ----------~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fL 418 (579)
T KOG1125|consen 351 ----------TNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFL 418 (579)
T ss_pred ----------ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHH
Confidence 23334444445555555555565555555432100 00000000 11122223445566777
Q ss_pred HhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCc
Q 038364 829 SMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 829 ~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~ 906 (1076)
.+....+..+|++++.+|.-+|.-.|.++.|.+.|+.. ..+| |..+||-|........+.++|+.+|.+++++.|...
T Consensus 419 eaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yV 498 (579)
T KOG1125|consen 419 EAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYV 498 (579)
T ss_pred HHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCee
Confidence 77666677788999999999999999999999999987 5666 566999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHH
Q 038364 907 ANYNLMMNLLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 907 ~~y~~L~~~y~~~G~~~eA~~~~~~m~ 933 (1076)
.+.+.|+-.|...|-++||.+.+-...
T Consensus 499 R~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 499 RVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred eeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999999999999999999887754
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00034 Score=71.61 Aligned_cols=195 Identities=17% Similarity=0.062 Sum_probs=136.5
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHcCCCC-ChhhHHHHHHHHhhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHHc
Q 038364 707 SSLLQTCGGLGLLQNGKEIHCLCLKNGFIK-DAYVATGLIDMYSKSGNLKSAREVFRKSA---NKTLASWNCMIMGFAIY 782 (1076)
Q Consensus 707 ~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~-d~~~~~~Li~~y~k~G~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~ 782 (1076)
..|--.|...|+...|+.-++.+++. +| +..++..+...|.+.|..+.|.+-|++.. .++-...|....-+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 33444556666666666666666663 33 34566777777888888888888887644 34556677777788888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHH
Q 038364 783 GNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAW 860 (1076)
Q Consensus 783 g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~ 860 (1076)
|++++|...|++....-.-|.. .||..+.-.-.+.|+.+.|.++|++..+ ..|+ ......|.+...+.|++.+|.
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHH
Confidence 8888888888888764333332 4666666566678888888888888764 3444 456677888888888888888
Q ss_pred HHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCc
Q 038364 861 DFIRTM--PFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 861 ~l~~~m--~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~ 906 (1076)
.+++.. ...+...+.--.+..-...||.+.+-+.-.++...-|...
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 888876 2346666665566667778888888888777777778654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00041 Score=72.93 Aligned_cols=306 Identities=13% Similarity=0.120 Sum_probs=179.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHH-HHHHh
Q 038364 601 WNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSL-ISGSL 679 (1076)
Q Consensus 601 ~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~L-I~~~~ 679 (1076)
+++.+..+.+..++++|++++..-.+.. ..+....+.|...|-+..++..|...++++... .|...-|... ...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 5566666777888888888887766553 115566677777888888888888888887653 4555555432 34566
Q ss_pred cCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHH--hcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHH
Q 038364 680 QNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTC--GGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSA 757 (1076)
Q Consensus 680 ~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~--~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A 757 (1076)
+++.+.+|+.+...|.+. |+...-..-+.+. -..+++..++.+.++.-. +.+..+.+...-...+.|+.+.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCccchhccchheeeccccHHHH
Confidence 778888888888877542 2222111112221 133455555544443321 12233333344444566666666
Q ss_pred HHHHHhcCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 038364 758 REVFRKSAN----KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTD 833 (1076)
Q Consensus 758 ~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~ 833 (1076)
.+-|+...+ .....||.-+. .-+.|+.+.|+++..+..+.|++-... ++ -|..-++..+ +..
T Consensus 164 vqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPE-lg--------IGm~tegiDv-rsv--- 229 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPE-LG--------IGMTTEGIDV-RSV--- 229 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCc-cC--------ccceeccCch-hcc---
Confidence 666665443 12344543332 334455666666666666655532211 00 0111111110 000
Q ss_pred CCCCCCcccHHHHH-------HHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCC
Q 038364 834 YNIIPTIEHYSCMV-------DLLGKAGYLDEAWDFIRTMP----FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLE 902 (1076)
Q Consensus 834 ~g~~p~~~~y~~li-------~~l~r~G~l~eA~~l~~~m~----~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~ 902 (1076)
| .|-..|-+.++ ..+.+.|+.+.|.+-+..|| .+.|++|...+.-. -..++.-.+.+-+.-+++++
T Consensus 230 -g-Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 230 -G-NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN 306 (459)
T ss_pred -c-chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC
Confidence 0 01112233333 44578999999999999996 34577877655322 23466677777778888999
Q ss_pred CCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 903 PCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 903 P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
|-.++++..+.-+|++..-++-|..++.+-
T Consensus 307 PfP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 307 PFPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred CCChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 988899999999999999999999888653
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.9e-05 Score=74.56 Aligned_cols=121 Identities=12% Similarity=0.022 Sum_probs=82.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 038364 790 LLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-P 867 (1076)
Q Consensus 790 ~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~ 867 (1076)
.+|++..+ +.|+. +.....++...|++++|...|+.... +.| +...|..+..++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45555555 45654 33445556777777777777777654 334 3556677777777777777777777776 2
Q ss_pred C-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 868 F-KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 868 ~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
. +.+...|..+..++...|+.++|+..+++++++.|+++..+...+++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 2 3355677777777778888888888888888888888777777766554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0001 Score=77.00 Aligned_cols=147 Identities=10% Similarity=0.079 Sum_probs=108.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCC
Q 038364 776 IMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGY 855 (1076)
Q Consensus 776 i~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~ 855 (1076)
+..|.+.|+++......+.+.. |. . .+...++.+++...++...+. -..+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCC
Confidence 3566677776665444332221 11 0 112245667777666666542 23457788889999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHHcCC--chHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHH
Q 038364 856 LDEAWDFIRTM-PFKP-DATIWGALLGS-CRIHGH--LEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRH 930 (1076)
Q Consensus 856 l~eA~~l~~~m-~~~p-d~~~~~~Ll~a-~~~~g~--~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~ 930 (1076)
+++|...+++. ...| +..+|..+..+ +...|+ .++|..+++++++.+|+++.++..|+..+.+.|++++|...++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999887 3445 56677777776 467777 5999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 038364 931 SMDEVG 936 (1076)
Q Consensus 931 ~m~~~g 936 (1076)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 997655
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00028 Score=87.59 Aligned_cols=197 Identities=13% Similarity=0.146 Sum_probs=165.5
Q ss_pred ChhhHHHHHHHHhhcCCHHHHHHHHHhcCCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHH
Q 038364 737 DAYVATGLIDMYSKSGNLKSAREVFRKSANK--------TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITF 807 (1076)
Q Consensus 737 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~--------d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~ 807 (1076)
....|-..+......++++.|++++++.... -...|.++++.-...|.-+...++|+++.+. -|. ..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHHH
Confidence 3566777778888899999999999876531 2358999999999999888899999999883 344 457
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHH
Q 038364 808 TALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD---ATIWGALLGSCR 883 (1076)
Q Consensus 808 ~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd---~~~~~~Ll~a~~ 883 (1076)
..|+.-|.+.+..++|-++++.|.++++ .....|..+++.+.+...-++|.+++++. ..-|. .....-....-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8888889999999999999999999877 56778999999999999999999999875 33333 335556667778
Q ss_pred HcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCCCc
Q 038364 884 IHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVGVK 938 (1076)
Q Consensus 884 ~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g~~ 938 (1076)
++||.+.|+.+|+.++.-.|.....|..++++=.+.|..+.+..+|++..+.++.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999877664
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.01 Score=67.99 Aligned_cols=232 Identities=13% Similarity=0.082 Sum_probs=137.3
Q ss_pred HHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHH-HHHHHHhcCCCchhHHHHHHHHHHcCCCCC------hhhHHHHHH
Q 038364 674 LISGSLQNENYRESLKFFIQMQQEDIKPNSTTMS-SLLQTCGGLGLLQNGKEIHCLCLKNGFIKD------AYVATGLID 746 (1076)
Q Consensus 674 LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~-~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d------~~~~~~Li~ 746 (1076)
+..+.-+..+++.|++-+....+. . ...+|. ..-.++...|...+....-...++.|.+.- ......+.+
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el--~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALEL--A-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhH--h-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 444444455555555555555442 2 222322 222334444444444333333333332210 011222555
Q ss_pred HHhhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHH
Q 038364 747 MYSKSGNLKSAREVFRKSAN--KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAIT-FTALLAACKNSGLVEEG 823 (1076)
Q Consensus 747 ~y~k~G~~~~A~~vf~~m~~--~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t-~~~ll~a~~~~g~~~eA 823 (1076)
.|.+.++++.|...|.+... ++. ....+....++++...+...- +.|+... ...=-+.+.+.|++.+|
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~-------~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTP-------DLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCH-------HHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHH
Confidence 78888999999998887442 121 112233344555555555444 4555422 12224457788999999
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCchHHHHHHHHHhcC
Q 038364 824 WKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPDAT-IWGALLGSCRIHGHLEYAEIASRRLFKL 901 (1076)
Q Consensus 824 ~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd~~-~~~~Ll~a~~~~g~~e~A~~~~~~l~~l 901 (1076)
.+.+.++... -+-|...|....-+|.+.|.+.+|++=.+.. ...|+.. .|.-=..++..-.+++.|...|++.++.
T Consensus 378 v~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 378 VKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998864 2334678888888999999998888766554 3445433 5555556667778999999999999999
Q ss_pred CCCCchhHHHHHHHHHHc
Q 038364 902 EPCNSANYNLMMNLLAMS 919 (1076)
Q Consensus 902 ~P~~~~~y~~L~~~y~~~ 919 (1076)
+|++.+.-.-+.+.+...
T Consensus 456 dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 456 DPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred CchhHHHHHHHHHHHHHh
Confidence 999877766666666543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.045 Score=61.54 Aligned_cols=436 Identities=14% Similarity=0.136 Sum_probs=215.6
Q ss_pred hCCChHHHHHHHHhcCCC---C------hhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH--HhcC
Q 038364 443 RNNKLELATRVFDSMKDH---N------LSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGH--FTHG 511 (1076)
Q Consensus 443 k~g~~~~A~~lf~~m~~~---d------~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~--~~~g 511 (1076)
|.+++.+|.++|.++-+. + .+.-+.+|++|..++ .+.....+.+..+.- | ...|-.+..++ -+.+
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQF--G-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHHhh
Confidence 455566666666555221 1 123455666665543 333333333333321 1 23344444433 3556
Q ss_pred ChhhHHHHHHHHHhc--CCCC------------CcccHHHHHHHHHhcCchHHHHHHHHHHHHcCC----CCchhHHHHH
Q 038364 512 SYQNVLTLLRGMQSL--GFRP------------NGSSVSVVLQAVTELRLLKYGRESHGYILRNGL----DYDLYVGTSL 573 (1076)
Q Consensus 512 ~~~~Al~l~~~m~~~--gi~p------------d~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~----~~d~~v~~aL 573 (1076)
.+.+|++.+....+. +-+| |-.-=..........|.+.+|+.++..++..=+ ..+...|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 777777776665544 2221 111112344556788888899888887776544 4788888888
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHH---------HHHHHHHHHHc-CCCCCccchhhhhhhh
Q 038364 574 MDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVN---------AKKMLNQMEEE-EIKPDLVSWNSLVSGY 643 (1076)
Q Consensus 574 i~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~---------A~~lf~~M~~~-g~~pd~~t~~~Li~~y 643 (1076)
+-||++.--++.-. .+...=..-|--||..|.+.=+.-+ +.+++..+.+. -+.|-.
T Consensus 174 vlmlsrSYfLEl~e----~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e---------- 239 (549)
T PF07079_consen 174 VLMLSRSYFLELKE----SMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKE---------- 239 (549)
T ss_pred HHHHhHHHHHHHHH----hcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHh----------
Confidence 88887753332211 1111112345566666655422221 12222222221 011111
Q ss_pred hhcCChhHHHHHHHHhHhcCCCCchH-HHHHHHHHHhcCCChhHHHHHHHHHhhcCCCC----ChhhHHHHHHHHhcCCC
Q 038364 644 SIWGQSKEALVIIHHMKNSGIYPNVV-TWTSLISGSLQNENYRESLKFFIQMQQEDIKP----NSTTMSSLLQTCGGLGL 718 (1076)
Q Consensus 644 ~k~g~~~~A~~lf~~m~~~gi~pd~~-ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~p----d~~t~~~lL~a~~~~g~ 718 (1076)
+..--.++++.-...-+.|+-. .-..|+..+.+ +.+++..+-+.+....+.+ =..+|..+|+.+.+.++
T Consensus 240 ----~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 240 ----RLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred ----hccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111112222222333444422 22334444444 4555555555544332222 13468888888888888
Q ss_pred chhHHHHHHHHHHcCCCCChhhHH-------HHHHHHhhc----CCHHHHHHHHHhcCCCChH-----HHHH-HHHHHHH
Q 038364 719 LQNGKEIHCLCLKNGFIKDAYVAT-------GLIDMYSKS----GNLKSAREVFRKSANKTLA-----SWNC-MIMGFAI 781 (1076)
Q Consensus 719 ~~~a~~i~~~~~~~g~~~d~~~~~-------~Li~~y~k~----G~~~~A~~vf~~m~~~d~~-----s~n~-li~~~~~ 781 (1076)
..+|.+.+..+.- ++|+..+.. +|.++.+.- -++.+=..+++.....|+. .|-. -..-+-+
T Consensus 314 T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~ 391 (549)
T PF07079_consen 314 TEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWE 391 (549)
T ss_pred HHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHh
Confidence 8888888877765 555544322 222332211 0111112222222222221 1100 0111222
Q ss_pred cCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 038364 782 YGN-GKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAW 860 (1076)
Q Consensus 782 ~g~-~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~ 860 (1076)
.|. -++|+++++...+ +.|...-.-..+--+ ..+.+.++... .... ++=+-+
T Consensus 392 ~g~~dekalnLLk~il~--ft~yD~ec~n~v~~f--------vKq~Y~qaLs~-------~~~~----------rLlkLe 444 (549)
T PF07079_consen 392 IGQCDEKALNLLKLILQ--FTNYDIECENIVFLF--------VKQAYKQALSM-------HAIP----------RLLKLE 444 (549)
T ss_pred cCCccHHHHHHHHHHHH--hccccHHHHHHHHHH--------HHHHHHHHHhh-------hhHH----------HHHHHH
Confidence 333 4455555555554 333322111111000 11112222111 0000 112234
Q ss_pred HHHHhCCCCC----CHHHHHHHHHH--HHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 861 DFIRTMPFKP----DATIWGALLGS--CRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 861 ~l~~~m~~~p----d~~~~~~Ll~a--~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
.++++.++.| +...-|-|.+| ...+|++.++.-...-+.++.| .+.+|.+++-.+....+++||.+.+.++
T Consensus 445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 5566666544 34466667666 5689999999999999999999 7899999999999999999999999887
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=8.7e-05 Score=73.35 Aligned_cols=95 Identities=11% Similarity=-0.114 Sum_probs=85.8
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHc
Q 038364 842 HYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMS 919 (1076)
Q Consensus 842 ~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~ 919 (1076)
.+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|...++++++++|+++..+..++.+|...
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 4566788999999999999999986 3444 6779999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 038364 920 NRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 920 G~~~eA~~~~~~m~~~g 936 (1076)
|+.++|.+.+++..+..
T Consensus 106 g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 106 GEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999986544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00018 Score=70.44 Aligned_cols=118 Identities=8% Similarity=0.001 Sum_probs=97.6
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
.+..-.+...+...|++++|.++|+-. ...| +..-|..|...|...|++++|+.+|.++..++|+++..|..++..|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 445556777888999999999999987 3444 56689999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhCCCccCcceEEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHH
Q 038364 918 MSNRWEDVERLRHSMDEVGVKSVLVWSWIQIDQIVHVFSAEGAPHPATGEIYFELYHLVSEMK 980 (1076)
Q Consensus 918 ~~G~~~eA~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~ 980 (1076)
..|+.++|.+-|+...... ..+|+...|.+.++.....+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 9999999999999874321 135666677777776666554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0021 Score=72.21 Aligned_cols=187 Identities=9% Similarity=0.084 Sum_probs=118.8
Q ss_pred HHHHHHHhhcC-CHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCH--HHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 038364 742 TGLIDMYSKSG-NLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNG--KEAILLFHELLETGFQPD-AITFTALLAAC 814 (1076)
Q Consensus 742 ~~Li~~y~k~G-~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~--~~Al~l~~~M~~~g~~Pd-~~t~~~ll~a~ 814 (1076)
+....++.+.| +++++...++++.+ ++...|+-....+.+.|+. ++++.++++|.+ ..|. ...|.....++
T Consensus 75 ~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l 152 (320)
T PLN02789 75 HFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVL 152 (320)
T ss_pred HHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHH
Confidence 33333444445 45667766665543 3444566544444445542 566777777776 3443 35676666677
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 038364 815 KNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKA---GY----LDEAWDFIRTM-PFKP-DATIWGALLGSCRIH 885 (1076)
Q Consensus 815 ~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~---G~----l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~ 885 (1076)
.+.|+++++.+.++++.+. . .-+...|+....++.+. |. .+++.++.+++ ...| |...|+-+.+.+..+
T Consensus 153 ~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~ 230 (320)
T PLN02789 153 RTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDD 230 (320)
T ss_pred HHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcC
Confidence 7777788888888777653 1 22344555554444443 22 24566666444 4444 566899998888774
Q ss_pred ----CCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcC------------------ChHHHHHHHHHH
Q 038364 886 ----GHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSN------------------RWEDVERLRHSM 932 (1076)
Q Consensus 886 ----g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G------------------~~~eA~~~~~~m 932 (1076)
++..+|...+.+++..+|+++.+...|+++|+... ..++|.++.+.+
T Consensus 231 ~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 231 KEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred CcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 34567889999999999999999999999998743 235677777777
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0014 Score=81.70 Aligned_cols=192 Identities=17% Similarity=0.196 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCC-----hhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHH
Q 038364 668 VVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPN-----STTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVAT 742 (1076)
Q Consensus 668 ~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd-----~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~ 742 (1076)
...|-..|.-..+.++.++|.+++++.+.. +.+. ...|.++++.-...|.-+...++|+++.+. ...-.+|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 345555666666666666666666665532 2221 124444444444444455555555555552 22234455
Q ss_pred HHHHHHhhcCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHH-HHHHHh
Q 038364 743 GLIDMYSKSGNLKSAREVFRKSANK---TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD--AITFTAL-LAACKN 816 (1076)
Q Consensus 743 ~Li~~y~k~G~~~~A~~vf~~m~~~---d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd--~~t~~~l-l~a~~~ 816 (1076)
.|...|.+.++.++|.++++.|.++ ....|...+..+.++.+.+.|..++++.++. -|- ++-+.+- ...-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhh
Confidence 5666666666666666666665532 3345666666666666666666666655552 232 2222111 111234
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC
Q 038364 817 SGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM 866 (1076)
Q Consensus 817 ~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m 866 (1076)
.|+.++|+.+|+.....| +-....|+.+|++=.++|..+.++.+|++.
T Consensus 1613 ~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred cCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 455555555555554432 122445555555555555555555555553
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.2e-05 Score=56.44 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 038364 362 LLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAIS 396 (1076)
Q Consensus 362 ~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~ 396 (1076)
++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 48999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00065 Score=79.81 Aligned_cols=221 Identities=17% Similarity=0.186 Sum_probs=140.7
Q ss_pred CCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhh
Q 038364 562 GLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVS 641 (1076)
Q Consensus 562 g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~ 641 (1076)
+++|--..-..+...+.++|...+|..+|++.. .|--.|..|+..|+..+|..+..+-.+. +||..-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 344555556678889999999999999999864 6888899999999999999998888773 788888888888
Q ss_pred hhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchh
Q 038364 642 GYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQN 721 (1076)
Q Consensus 642 ~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~ 721 (1076)
..-...-++.|+++++....+ .-..+.....++++++++.+.|+.-.+ +.|
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~np-------------------- 516 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INP-------------------- 516 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCc--------------------
Confidence 877777788888888765321 101111112235666666666655432 111
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcC--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 038364 722 GKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSA--NK-TLASWNCMIMGFAIYGNGKEAILLFHELLET 798 (1076)
Q Consensus 722 a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~--~~-d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~ 798 (1076)
.-..+|-.+.-++.++++++.|.+.|..-. +| +..+||.+-.+|.+.++-.+|...+++..+.
T Consensus 517 --------------lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 517 --------------LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred --------------cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 122334444455556666666666665543 23 3356777777777777777777777777665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 038364 799 GFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTD 833 (1076)
Q Consensus 799 g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~ 833 (1076)
+..|-.+ |...+-.-.+.|.+++|.+.+.++...
T Consensus 583 n~~~w~i-WENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 583 NYQHWQI-WENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred CCCCCee-eechhhhhhhcccHHHHHHHHHHHHHh
Confidence 5333222 222222335566777777766666543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00062 Score=71.28 Aligned_cols=135 Identities=18% Similarity=0.140 Sum_probs=107.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 038364 800 FQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM--PFKPDATIWGA 877 (1076)
Q Consensus 800 ~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m--~~~pd~~~~~~ 877 (1076)
..|+......+-.++...|+-+.+..+...... ...-+.+.....+....+.|++.+|...+.+. +-++|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 355443334445567777887877777666543 22333445556888899999999999999987 45678889999
Q ss_pred HHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 878 LLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 878 Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
+..+|-+.|+.+.|...+.+++++.|+++..++.|+..|.-.|+.++|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999998886554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00063 Score=73.38 Aligned_cols=179 Identities=15% Similarity=0.047 Sum_probs=126.9
Q ss_pred ChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCC----hhhHHHHHHHHhhcCCHHHHHHHHHhcCCCC---hH---H
Q 038364 702 NSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKD----AYVATGLIDMYSKSGNLKSAREVFRKSANKT---LA---S 771 (1076)
Q Consensus 702 d~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d----~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d---~~---s 771 (1076)
....+..+...+...|+++.|...++.+++. .|+ ...+..+...|.+.|++++|...++++.+.+ .. .
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 4556777778888999999999999998874 333 2456778999999999999999999886422 22 4
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCccc
Q 038364 772 WNCMIMGFAIY--------GNGKEAILLFHELLETGFQPDAI-TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEH 842 (1076)
Q Consensus 772 ~n~li~~~~~~--------g~~~~Al~l~~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~ 842 (1076)
|..+..++... |+.++|++.|+++.+ ..|+.. ....+... +.... .. . ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~----~~~~~------~~-~--------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRM----DYLRN------RL-A--------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHH----HHHHH------HH-H--------HH
Confidence 55556666654 788999999999998 466653 22221111 00000 00 0 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCC
Q 038364 843 YSCMVDLLGKAGYLDEAWDFIRTM----PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEP 903 (1076)
Q Consensus 843 y~~li~~l~r~G~l~eA~~l~~~m----~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P 903 (1076)
...+.+.|.+.|+.++|...+++. +..| ....|..+..++...|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 235677889999999999988876 2223 346888999999999999999998888776555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00039 Score=81.65 Aligned_cols=188 Identities=18% Similarity=0.182 Sum_probs=133.4
Q ss_pred CCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038364 734 FIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAA 813 (1076)
Q Consensus 734 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a 813 (1076)
+.|-...-..+.+.+.++|-..+|..+|++. ..|.-.|.+|...|+..+|..+..+-.+ -+||..-|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 4455555566778888888888888888874 4677788888888888888888777776 47788888887777
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHH
Q 038364 814 CKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYA 891 (1076)
Q Consensus 814 ~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A 891 (1076)
......++.|+++++....+ .-..+.....+.++++++.+.++.- .+.| ...+|-.+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 77777778888887765432 1111222233467777777777663 3434 344777777777777778888
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 892 EIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 892 ~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
.++|.....++|++.+.++.++..|.+.|+-.+|...+++..+.+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 888888778888887788888888888877777777777775544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0011 Score=81.81 Aligned_cols=188 Identities=11% Similarity=0.051 Sum_probs=138.2
Q ss_pred hHHHHHHHHhcCCCchhH-HHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHH----HHHHHhcCCCChHHHHHHHHHH
Q 038364 705 TMSSLLQTCGGLGLLQNG-KEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSA----REVFRKSANKTLASWNCMIMGF 779 (1076)
Q Consensus 705 t~~~lL~a~~~~g~~~~a-~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A----~~vf~~m~~~d~~s~n~li~~~ 779 (1076)
.+..+=.+.+..|..+++ .+++.++.+ ++...++.....++ ..+-++- ..++..+-.|....
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~La~i~ 96 (694)
T PRK15179 30 ILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRRY-PHTELFQVLVARAL 96 (694)
T ss_pred HHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHhc-cccHHHHHHHHHHH
Confidence 333333455666666554 667776655 33333332222222 2222221 13567788888999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHH
Q 038364 780 AIYGNGKEAILLFHELLETGFQPDAI-TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLD 857 (1076)
Q Consensus 780 ~~~g~~~~Al~l~~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~ 857 (1076)
.+.|+.++|+.+++...+ +.||.. .+..+...+.+.+.+++|....++... ..|+ ..+...+..++.+.|+.+
T Consensus 97 ~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~a~~l~~~g~~~ 171 (694)
T PRK15179 97 EAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLEAKSWDEIGQSE 171 (694)
T ss_pred HHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHhcchH
Confidence 999999999999999998 789986 566677789999999999999998864 4565 567788889999999999
Q ss_pred HHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHH
Q 038364 858 EAWDFIRTMP-FKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYN 910 (1076)
Q Consensus 858 eA~~l~~~m~-~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~ 910 (1076)
+|.++|++.- ..|+ ..+|.++..++...|+.++|..+|+++++...+-...|+
T Consensus 172 ~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 172 QADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 9999999973 3444 679999999999999999999999999988765544444
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.75 E-value=4.1e-05 Score=55.05 Aligned_cols=35 Identities=37% Similarity=0.692 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc
Q 038364 599 VAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDL 633 (1076)
Q Consensus 599 ~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~ 633 (1076)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36888888888888888888888888888888874
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0026 Score=72.10 Aligned_cols=144 Identities=17% Similarity=0.125 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHH
Q 038364 771 SWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLA-ACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVD 848 (1076)
Q Consensus 771 s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~-a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~ 848 (1076)
.|-...-.+...|+.++|+..++.+.. -.||...|..+.. -+...++.++|.+.++.+.. ..|+ ....-.+.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHH
Confidence 333344445567888899999998887 4778777666555 47888999999999988875 3566 455667788
Q ss_pred HHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHH
Q 038364 849 LLGKAGYLDEAWDFIRTM--PFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVE 926 (1076)
Q Consensus 849 ~l~r~G~l~eA~~l~~~m--~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~ 926 (1076)
+|.+.|+..+|..+++.. ..+-|+..|..|..+|...|+..++..+. +..|...|+|++|.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHH
Confidence 899999999999998886 34567889999999999999988877653 56677889999999
Q ss_pred HHHHHHHhCC
Q 038364 927 RLRHSMDEVG 936 (1076)
Q Consensus 927 ~~~~~m~~~g 936 (1076)
......+++.
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 9998887764
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0057 Score=69.39 Aligned_cols=176 Identities=14% Similarity=0.059 Sum_probs=128.6
Q ss_pred CCHHHHHHHHHhcCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038364 752 GNLKSAREVFRKSANK------TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWK 825 (1076)
Q Consensus 752 G~~~~A~~vf~~m~~~------d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~ 825 (1076)
.++.+++..-+.++.. +...+...+.+.........+..++.+-.+. .-...-|..-+ .....|..++|+.
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHH
Confidence 3566666666666642 3344455555444333333333333222221 11122233322 3556799999999
Q ss_pred HHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCC
Q 038364 826 YFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLE 902 (1076)
Q Consensus 826 ~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~ 902 (1076)
.++.+... .|+ +..+....+.+.+.++.++|.+.++++ ...|+ ...|-++..++.+.|+..+|+..+.....-+
T Consensus 328 ~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~ 404 (484)
T COG4783 328 LLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND 404 (484)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence 99998764 454 566678889999999999999999997 45676 6788899999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 038364 903 PCNSANYNLMMNLLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 903 P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~ 933 (1076)
|+++..|..|+..|...|+-.+|..-+.++.
T Consensus 405 p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 405 PEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred CCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 9999999999999999999999999888873
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0026 Score=73.26 Aligned_cols=215 Identities=15% Similarity=0.091 Sum_probs=163.2
Q ss_pred HHhCCChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHH
Q 038364 441 YSRNNKLELATRVFDSMKDH---NLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVL 517 (1076)
Q Consensus 441 y~k~g~~~~A~~lf~~m~~~---d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al 517 (1076)
+.+.|++.+|.-.|+..... ++..|--|-...+.+++-..|+..+++-.+.... |....-.|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence 56788899999999887543 4568999999999999999999999999888766 7888888889999999999999
Q ss_pred HHHHHHHhcCCC--------CCcccHHHHHHHHHhcCchHHHHHHH-HHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHH
Q 038364 518 TLLRGMQSLGFR--------PNGSSVSVVLQAVTELRLLKYGRESH-GYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQE 588 (1076)
Q Consensus 518 ~l~~~m~~~gi~--------pd~~t~~~ll~a~~~~g~~~~a~~i~-~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~ 588 (1076)
+.|+.......+ ++..+-.. +.......+....++| +.....+...|..+...|--.|--.|+++.|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999988654310 01100000 1111222233344444 444455666888889999999999999999999
Q ss_pred HHhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcc-chhhhhhhhhhcCChhHHHHHHHHhH
Q 038364 589 VFDNMKN---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLV-SWNSLVSGYSIWGQSKEALVIIHHMK 660 (1076)
Q Consensus 589 lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~-t~~~Li~~y~k~g~~~~A~~lf~~m~ 660 (1076)
.|+.... .|-..||-|-..++...+.++|+.-|++..+. +|+-+ ..-.|.-.|...|.+++|.+.|-+..
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9998765 47789999999999999999999999999875 56643 44456677889999999998887655
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0026 Score=66.41 Aligned_cols=154 Identities=11% Similarity=0.126 Sum_probs=112.5
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038364 744 LIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEG 823 (1076)
Q Consensus 744 Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA 823 (1076)
-+-+|.+.|+++.+....+.+..+. ..+...++.++++..+++..+.. ..|...|..+...|...|++++|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456888888877655543332211 11223667788888888877732 34445788888889999999999
Q ss_pred HHHHHHhhhcCCCCC-CcccHHHHHHHH-HhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHH
Q 038364 824 WKYFDSMSTDYNIIP-TIEHYSCMVDLL-GKAGY--LDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRR 897 (1076)
Q Consensus 824 ~~~~~~m~~~~g~~p-~~~~y~~li~~l-~r~G~--l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~ 897 (1076)
...|++..+ +.| +...+..+..++ .+.|+ .++|.+++++. ...| +...+..+..++...|++++|+..+++
T Consensus 93 ~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998865 345 466777888764 67787 59999999987 3445 566888888889999999999999999
Q ss_pred HhcCCCCCchhH
Q 038364 898 LFKLEPCNSANY 909 (1076)
Q Consensus 898 l~~l~P~~~~~y 909 (1076)
+++++|.+..-+
T Consensus 170 aL~l~~~~~~r~ 181 (198)
T PRK10370 170 VLDLNSPRVNRT 181 (198)
T ss_pred HHhhCCCCccHH
Confidence 999988765444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0038 Score=77.10 Aligned_cols=193 Identities=11% Similarity=0.028 Sum_probs=138.6
Q ss_pred hHHHHHHHHHHhcCCChhHHH-HHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHH--cCCCCChhhHHHH
Q 038364 668 VVTWTSLISGSLQNENYRESL-KFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLK--NGFIKDAYVATGL 744 (1076)
Q Consensus 668 ~~ty~~LI~~~~~~g~~~eAl-~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~--~g~~~d~~~~~~L 744 (1076)
....+.+=.+...-|..++|- ++..+..+ ++. .++.+..+.+.+-.+.. ..+..++..+..|
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 92 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQARQ------------VLE---RHAAVHKPAAALPELLDYVRRYPHTELFQVLV 92 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHH---HhhhhcchHhhHHHHHHHHHhccccHHHHHHH
Confidence 333444444566667777663 34444432 333 33444444333332221 1256678889999
Q ss_pred HHHHhhcCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCH
Q 038364 745 IDMYSKSGNLKSAREVFRKSAN--K-TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTA-LLAACKNSGLV 820 (1076)
Q Consensus 745 i~~y~k~G~~~~A~~vf~~m~~--~-d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~-ll~a~~~~g~~ 820 (1076)
.......|++++|..+++...+ | +...+-.++..+.+.+++++|+..+++... ..|+..+... +..++.+.|..
T Consensus 93 a~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 93 ARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcch
Confidence 9999999999999999998875 3 446778899999999999999999999998 6888876544 44568899999
Q ss_pred HHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 038364 821 EEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM--PFKPDATIWGALL 879 (1076)
Q Consensus 821 ~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m--~~~pd~~~~~~Ll 879 (1076)
++|..+|+++... ..-+...+..+..++-+.|+.++|...|++. ...|...-|+.++
T Consensus 171 ~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 171 EQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 9999999999862 2233678889999999999999999999987 2345555555554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.053 Score=58.69 Aligned_cols=224 Identities=8% Similarity=0.046 Sum_probs=113.7
Q ss_pred CCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHH
Q 038364 681 NENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREV 760 (1076)
Q Consensus 681 ~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~v 760 (1076)
.|+...|++.+..+++. ...|...+..-..++...|++..|..=+..+-+.. ..+....--+...+...|+.+.+...
T Consensus 168 ~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 168 SGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred CCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHH
Confidence 44444444444444431 12233334344444445555554444444333321 12233333456666677777777766
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-
Q 038364 761 FRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT- 839 (1076)
Q Consensus 761 f~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~- 839 (1076)
.++..+-|+..- .+|....+..+..+.++.|.+ ....+.+-++.+-.+...+ ..|.
T Consensus 246 iRECLKldpdHK----~Cf~~YKklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk---~ep~~ 302 (504)
T KOG0624|consen 246 IRECLKLDPDHK----LCFPFYKKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLK---NEPEE 302 (504)
T ss_pred HHHHHccCcchh----hHHHHHHHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHh---cCCcc
Confidence 666543222100 011111222333333333332 1122333333333333332 1233
Q ss_pred ----cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHH
Q 038364 840 ----IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMM 913 (1076)
Q Consensus 840 ----~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~ 913 (1076)
...+..+-..+...|++-||+....+. .+.|| +.++.--..||.....++.|+.-|+++.+.+|+|..+
T Consensus 303 ~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~----- 377 (504)
T KOG0624|consen 303 TMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA----- 377 (504)
T ss_pred cceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH-----
Confidence 122333445566778888888777765 45666 5577777788888888999999999999999987432
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCcc
Q 038364 914 NLLAMSNRWEDVERLRHSMDEVGVKS 939 (1076)
Q Consensus 914 ~~y~~~G~~~eA~~~~~~m~~~g~~~ 939 (1076)
+.| .+.|.++.+....+..-|
T Consensus 378 ----reG-le~Akrlkkqs~kRDYYK 398 (504)
T KOG0624|consen 378 ----REG-LERAKRLKKQSGKRDYYK 398 (504)
T ss_pred ----HHH-HHHHHHHHHHhccchHHH
Confidence 222 356666666654444433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0004 Score=67.62 Aligned_cols=97 Identities=20% Similarity=0.230 Sum_probs=79.7
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
......+...+.+.|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++++|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 345566777788888888888888776 3334 56678888888888999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhCC
Q 038364 918 MSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 918 ~~G~~~eA~~~~~~m~~~g 936 (1076)
..|++++|.+.+++..+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 9999999999998886543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.22 Score=57.35 Aligned_cols=413 Identities=13% Similarity=0.130 Sum_probs=226.3
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 038364 360 DDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLIS 439 (1076)
Q Consensus 360 d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~ 439 (1076)
|+.+|+.||.-+-.+ ..+++.+.+++|... ++-....|..-+..-....+++..+.+|++.+..-+. ...|...++
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn--lDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN--LDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--HhHHHHHHH
Confidence 777888888765544 778888888877632 2223445666677777777888888888877766544 444554444
Q ss_pred HHHh-CCChHHHH----HHHHh------cCCCChhHHHHHHH---------HHHhCCChHHHHHHHHHHHhCCCCC----
Q 038364 440 MYSR-NNKLELAT----RVFDS------MKDHNLSSWNSMIS---------SYTGLGYVDVAWSLFNKMNSSRIQP---- 495 (1076)
Q Consensus 440 ~y~k-~g~~~~A~----~lf~~------m~~~d~~s~n~lI~---------~~~~~g~~~~A~~lf~~M~~~g~~p---- 495 (1076)
---+ .|+...++ +.|+- |.-..-..|+..|. -|..+.+.+...+++.++...-+.-
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 2221 23333322 22222 22233345666553 3455556777778888877543221
Q ss_pred --ChhhHHHHHHHHH-------hcCChhhHHHHHHHHHh--cCCCCCcccHHHHHHHHHhcCchHHHHHH--HHHHHH--
Q 038364 496 --DIITWNCLLSGHF-------THGSYQNVLTLLRGMQS--LGFRPNGSSVSVVLQAVTELRLLKYGRES--HGYILR-- 560 (1076)
Q Consensus 496 --d~~ty~~Li~~~~-------~~g~~~~Al~l~~~m~~--~gi~pd~~t~~~ll~a~~~~g~~~~a~~i--~~~~~~-- 560 (1076)
|-.+|..=|+-.. +...+..|.+++++++. +|..-+..+ .-..|--++.+++ +...++
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W~n~I~wE 247 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELWKNWIKWE 247 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHHHHHHHHH
Confidence 1122222222111 22355667777777653 343332222 0111222222222 221222
Q ss_pred --cCCC-Cch--------hHHHHHHHHHHhC-CCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCC-------hHHHHHHH
Q 038364 561 --NGLD-YDL--------YVGTSLMDMYVKN-DCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGL-------FVNAKKML 621 (1076)
Q Consensus 561 --~g~~-~d~--------~v~~aLi~~y~k~-g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~-------~~~A~~lf 621 (1076)
.++. .+. ++++-.+....-+ .-+-++-..+.+..+ .+...|+ -+++..++
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~-----------l~~~~~d~~~a~~~t~e~~~~y 316 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISD-----------LLTEKGDVPDAKSLTDEAASIY 316 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhH-----------HHHHhcccccchhhHHHHHHHH
Confidence 1121 110 1111111111000 001111111211111 1222222 34455555
Q ss_pred HHHHHcCCCCCccchhhhhhhhh---hcCChhHHHHHHHHhHhc-CCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhc
Q 038364 622 NQMEEEEIKPDLVSWNSLVSGYS---IWGQSKEALVIIHHMKNS-GIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQE 697 (1076)
Q Consensus 622 ~~M~~~g~~pd~~t~~~Li~~y~---k~g~~~~A~~lf~~m~~~-gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~ 697 (1076)
+.....-..-+.-+|..+.+-=- +....+.....++++... .+.|+ .+|-.++..-.+..-+..|..+|.+..+.
T Consensus 317 Er~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~ 395 (656)
T KOG1914|consen 317 ERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKARED 395 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 55443322223333332221110 111244455566666542 23343 45777788888888899999999999998
Q ss_pred CCCC-ChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCC------ChH
Q 038364 698 DIKP-NSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANK------TLA 770 (1076)
Q Consensus 698 gi~p-d~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~------d~~ 770 (1076)
+..+ +.....+++.-++ .++.+.|..+|+.-++. +..++......++.+...++-..|+.+|++.... ...
T Consensus 396 ~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~ 473 (656)
T KOG1914|consen 396 KRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKE 473 (656)
T ss_pred cCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHH
Confidence 8888 6677777777665 57788899998876664 4455566678899999999999999999987754 235
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038364 771 SWNCMIMGFAIYGNGKEAILLFHELLE 797 (1076)
Q Consensus 771 s~n~li~~~~~~g~~~~Al~l~~~M~~ 797 (1076)
.|..||.--..-|+...++++=+++..
T Consensus 474 Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 474 IWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 899999999999999999998888765
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0014 Score=74.91 Aligned_cols=123 Identities=15% Similarity=0.158 Sum_probs=97.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCC
Q 038364 741 ATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGL 819 (1076)
Q Consensus 741 ~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~ 819 (1076)
-..|+..+...++++.|.++|+++.+.++..+-.|+..+...++-.+|++++++..+. .|+. .....-...|...++
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 3456666777889999999999998887777777888888888889999999998863 4433 344434444788899
Q ss_pred HHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 038364 820 VEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTMPF 868 (1076)
Q Consensus 820 ~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m~~ 868 (1076)
.+.|.++.+++.+ ..|+ ..+|..|+..|.+.|++++|+-.++.+|+
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999988874 4666 45899999999999999999999988874
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0009 Score=76.57 Aligned_cols=119 Identities=11% Similarity=0.048 Sum_probs=87.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcC
Q 038364 809 ALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHG 886 (1076)
Q Consensus 809 ~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g 886 (1076)
+|+..+...+++++|.++|+++.+. .|+ ....++..+...++-.+|.+++++. . .+.|...+.....-|...+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 3444455566666666666666543 132 3444566666666666777766665 2 2335556665566688899
Q ss_pred CchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 887 HLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 887 ~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
+++.|+.+++++.++.|++..+|..|+.+|.+.|++++|+-.++.+
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999887
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0053 Score=76.52 Aligned_cols=231 Identities=9% Similarity=0.041 Sum_probs=130.5
Q ss_pred chhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchH-HHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 038364 635 SWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVV-TWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTC 713 (1076)
Q Consensus 635 t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~-ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~ 713 (1076)
.+..|+..|...+++++|.++.+...+. .|+.. .|-.+...+.+.++.+++..+ .++...
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~~ 93 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDSF 93 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhhc
Confidence 4456666666677777777776655443 33322 222222244445544443333 222222
Q ss_pred hcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHH
Q 038364 714 GGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAIL 790 (1076)
Q Consensus 714 ~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~ 790 (1076)
....++.....+...+.+. ..+...+..|...|-+.|+.++|..+++++.+ .|+...|.+...|+.. +.++|++
T Consensus 94 ~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred ccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHH
Confidence 2233333333333344442 22334555677777777777777777776654 3455666666777766 7777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 038364 791 LFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTMPFK 869 (1076)
Q Consensus 791 l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m~~~ 869 (1076)
++.+.... +....++.++.++|..+... .|+ ...+..+.... ....+..
T Consensus 171 m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~---~~~d~d~f~~i~~ki------------~~~~~~~ 220 (906)
T PRK14720 171 YLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY---NSDDFDFFLRIERKV------------LGHREFT 220 (906)
T ss_pred HHHHHHHH---------------HHhhhcchHHHHHHHHHHhc---CcccchHHHHHHHHH------------Hhhhccc
Confidence 77666552 34445666666666666542 222 11111111111 1111222
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 870 PDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 870 pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
.-..+|--|-.-|+..++++.+..+++.+++.+|+|..+..-++..|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 334455566677888899999999999999999999888888888876
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00011 Score=52.62 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 038364 361 DLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKA 394 (1076)
Q Consensus 361 ~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p 394 (1076)
+.+||++|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00014 Score=52.06 Aligned_cols=33 Identities=24% Similarity=0.550 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC
Q 038364 463 SSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQP 495 (1076)
Q Consensus 463 ~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~p 495 (1076)
.+||++|.+|++.|+++.|+++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456666666666666666666666666666554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0065 Score=63.78 Aligned_cols=153 Identities=14% Similarity=0.146 Sum_probs=89.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcC
Q 038364 775 MIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAG 854 (1076)
Q Consensus 775 li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G 854 (1076)
+-..+...|+.+.+..+..+.... ..-|..............|++.+|...|.+... .-.+|.+.|+.+.-.|.+.|
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHcc
Confidence 344555555555555555543321 111222233345555666666666666666653 33445666666666666666
Q ss_pred CHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHH
Q 038364 855 YLDEAWDFIRTM-PFK-PDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRH 930 (1076)
Q Consensus 855 ~l~eA~~l~~~m-~~~-pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~ 930 (1076)
+.++|..-|.+. .+. -+..+.+.|.-.+...|+.+.|+.++.......+.++..-..|+-+....|++++|+++..
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 666666665554 222 2445566666666677777777777777766666666666677777777777777766554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.037 Score=62.21 Aligned_cols=209 Identities=11% Similarity=0.032 Sum_probs=118.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccC-CcHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 038364 364 WNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRT-IVKMLQACAKVG-AFHEGKQIHGYVLKSALESNLSVCNCLISMY 441 (1076)
Q Consensus 364 ~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t-~~~ll~a~~~~g-~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y 441 (1076)
++.+-..+...++.++|+.+..++.+. .|+..| |..--..+...+ +++++...++.+++.... +..+|+..--.+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 344444455566777777777776653 344332 333333333444 456677777777666533 333455444444
Q ss_pred HhCCCh--HHHHHHHHhcC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---CCh
Q 038364 442 SRNNKL--ELATRVFDSMK---DHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTH---GSY 513 (1076)
Q Consensus 442 ~k~g~~--~~A~~lf~~m~---~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~---g~~ 513 (1076)
.+.|+. +++...++++. .+|..+|+-....+.+.|+++++++.++++++.++. |..+|+.....+.+. |..
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 455542 45666666553 456678888888888888888888888888887776 777777766655554 222
Q ss_pred ----hhHHHHHHHHHhcCCCCC-cccHHHHHHHHHh----cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 038364 514 ----QNVLTLLRGMQSLGFRPN-GSSVSVVLQAVTE----LRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVK 579 (1076)
Q Consensus 514 ----~~Al~l~~~m~~~gi~pd-~~t~~~ll~a~~~----~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k 579 (1076)
+++++...++.... |+ ...|.-+...+.. .+...++......+.+.++ .+......|++.|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~--P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN--PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC--CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 35566665555544 43 3344444444443 1233445555555554332 244555666676664
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0012 Score=58.45 Aligned_cols=92 Identities=20% Similarity=0.203 Sum_probs=76.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcC
Q 038364 843 YSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSN 920 (1076)
Q Consensus 843 y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G 920 (1076)
+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|+++.|...+++..+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455677788889999999888876 3334 34677778888888999999999999999999998889999999999999
Q ss_pred ChHHHHHHHHHHHh
Q 038364 921 RWEDVERLRHSMDE 934 (1076)
Q Consensus 921 ~~~eA~~~~~~m~~ 934 (1076)
++++|.+.+++..+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999999888754
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00016 Score=50.46 Aligned_cols=31 Identities=23% Similarity=0.390 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 038364 362 LLWNEIIMVKLRNEKWENAIKLFREMQFSSA 392 (1076)
Q Consensus 362 ~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~ 392 (1076)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999988774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.64 Score=56.85 Aligned_cols=159 Identities=16% Similarity=0.067 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHH
Q 038364 771 SWNCMIMGFAIYGNGK---EAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMV 847 (1076)
Q Consensus 771 s~n~li~~~~~~g~~~---~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li 847 (1076)
+-|.|+..+.+.++.. +|+-+++.-... -.-|..+-..+|..|+..|-+..|.+.|+.+.-+ .+.-|..-|- +.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~ 514 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IF 514 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HH
Confidence 4478889999998876 455566665552 1334456677888999999999999999988665 5665544332 33
Q ss_pred HHHHhcCCHHHHHHHHHhCC-C-CCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC----chhHHHHHHHHHHcC
Q 038364 848 DLLGKAGYLDEAWDFIRTMP-F-KPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN----SANYNLMMNLLAMSN 920 (1076)
Q Consensus 848 ~~l~r~G~l~eA~~l~~~m~-~-~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~----~~~y~~L~~~y~~~G 920 (1076)
..+...|++..|...++... + ..+ ..+-.-+.-|| ++|.+..-.+...---.+.-.. ...-+...+.+...+
T Consensus 515 ~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~ 593 (932)
T KOG2053|consen 515 RRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNAD 593 (932)
T ss_pred HHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 55666778887777766641 1 001 11222222333 5566665544332111111111 122345677788889
Q ss_pred ChHHHHHHHHHHH
Q 038364 921 RWEDVERLRHSMD 933 (1076)
Q Consensus 921 ~~~eA~~~~~~m~ 933 (1076)
+.++-.+.+..|+
T Consensus 594 ~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 594 RGTQLLKLLESMK 606 (932)
T ss_pred cHHHHHHHHhccc
Confidence 9999999998885
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.074 Score=56.06 Aligned_cols=144 Identities=13% Similarity=0.096 Sum_probs=70.5
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038364 744 LIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEG 823 (1076)
Q Consensus 744 Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA 823 (1076)
-...|...|+.++|.+.......-+....| +..+.+..+.+-|.+.+++|.+ --+..|.+-|..++.
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~---ided~tLtQLA~awv-------- 180 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQ---IDEDATLTQLAQAWV-------- 180 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHH--------
Confidence 344566666666666666553222222222 2233444455555666666654 123334443333322
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcC
Q 038364 824 WKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMP--FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKL 901 (1076)
Q Consensus 824 ~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~--~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l 901 (1076)
....-.+++.+|.-+|++|. ..|...+.+....+|...|++++|+.+++.++..
T Consensus 181 ------------------------~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 181 ------------------------KLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred ------------------------HHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 22222334455555555551 3455555555555555556666666666666665
Q ss_pred CCCCchhHHHHHHHHHHcCChHH
Q 038364 902 EPCNSANYNLMMNLLAMSNRWED 924 (1076)
Q Consensus 902 ~P~~~~~y~~L~~~y~~~G~~~e 924 (1076)
+++++++...++-.--..|+-.+
T Consensus 237 d~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 237 DAKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred cCCCHHHHHHHHHHHHHhCCChH
Confidence 66555555555544444555433
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00022 Score=49.72 Aligned_cols=30 Identities=30% Similarity=0.584 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 038364 463 SSWNSMISSYTGLGYVDVAWSLFNKMNSSR 492 (1076)
Q Consensus 463 ~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g 492 (1076)
++||+||++|++.|++++|.++|++|.+.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 356666666666666666666666666655
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0035 Score=60.93 Aligned_cols=113 Identities=16% Similarity=0.085 Sum_probs=85.3
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 038364 791 LFHELLETGFQPDAI-TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PF 868 (1076)
Q Consensus 791 l~~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~ 868 (1076)
+|++..+ ..|+.. ....+...+...|++++|.+.|+.+... ...+...+..+...|.+.|++++|.+.+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 456553 3445556677888999999988887653 1234667788888898999999999888876 33
Q ss_pred CC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCch
Q 038364 869 KP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSA 907 (1076)
Q Consensus 869 ~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~ 907 (1076)
.| +...|..+...+...|+.+.|...++++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 34 5667888888899999999999999999999998754
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.023 Score=65.85 Aligned_cols=216 Identities=15% Similarity=0.130 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHH
Q 038364 615 VNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQM 694 (1076)
Q Consensus 615 ~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m 694 (1076)
-+.+.-+++|++.|-.||.+. +.+.++-.|++.+|.++|.+- |.-..|+++|..|
T Consensus 617 L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~----------------------G~enRAlEmyTDl 671 (1081)
T KOG1538|consen 617 LELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS----------------------GHENRALEMYTDL 671 (1081)
T ss_pred HHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc----------------------CchhhHHHHHHHH
Confidence 344445677788887787753 445677788999998888753 5556677777666
Q ss_pred hhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHH
Q 038364 695 QQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNC 774 (1076)
Q Consensus 695 ~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~ 774 (1076)
.-- -...-+...|.-++-+.+...-.+ ...++.--.+-..|+..+|+.++|..+.
T Consensus 672 RMF----------D~aQE~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~------------- 726 (1081)
T KOG1538|consen 672 RMF----------DYAQEFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEIC------------- 726 (1081)
T ss_pred HHH----------HHHHHHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhhh-------------
Confidence 421 112223333444333333322111 1111111123456667777777776653
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcC
Q 038364 775 MIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAG 854 (1076)
Q Consensus 775 li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G 854 (1076)
+.+|-.+-++++-+++... +..+...+..-+-+...+.-|.++|.+|-. ...++++....+
T Consensus 727 -----~d~gW~d~lidI~rkld~~----ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~ 787 (1081)
T KOG1538|consen 727 -----GDHGWVDMLIDIARKLDKA----EREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQ 787 (1081)
T ss_pred -----hcccHHHHHHHHHhhcchh----hhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecc
Confidence 3345555555554444321 223333333334455666778888888743 246788888899
Q ss_pred CHHHHHHHHHhCC-CCCCHHH-HH----------HHHHHHHHcCCchHHHHHHHHHh
Q 038364 855 YLDEAWDFIRTMP-FKPDATI-WG----------ALLGSCRIHGHLEYAEIASRRLF 899 (1076)
Q Consensus 855 ~l~eA~~l~~~m~-~~pd~~~-~~----------~Ll~a~~~~g~~e~A~~~~~~l~ 899 (1076)
+++||..+-++.| ..||+.. |. ..-.|+.+.|+..+|.++++++.
T Consensus 788 ~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 788 RWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred cchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 9999999988885 4455431 11 11234455555555555555543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.045 Score=57.58 Aligned_cols=172 Identities=14% Similarity=0.097 Sum_probs=119.3
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 038364 553 ESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPD 632 (1076)
Q Consensus 553 ~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd 632 (1076)
.+.+.+.......+......-...|++.|+.++|.+.......-+....| ...+.+..+.+-|.+.+++|.+-. +
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~id---e 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQID---E 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccc---h
Confidence 34445555545555444444456788999999999998884433333333 344567788899999999998653 6
Q ss_pred ccchhhhhhhhhh----cCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHH
Q 038364 633 LVSWNSLVSGYSI----WGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSS 708 (1076)
Q Consensus 633 ~~t~~~Li~~y~k----~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~ 708 (1076)
..|.+.|..++.+ .+.+.+|.-+|++|.++ ..|+..+.|-+..++...|++++|..++++..... .-++.|+..
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHH
Confidence 6788777777765 45789999999999763 57888888889999999999999999999988753 335666666
Q ss_pred HHHHHhcCCCchh-HHHHHHHHHH
Q 038364 709 LLQTCGGLGLLQN-GKEIHCLCLK 731 (1076)
Q Consensus 709 lL~a~~~~g~~~~-a~~i~~~~~~ 731 (1076)
++......|.-.+ ..+...++..
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHh
Confidence 6665555555433 3344444443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0057 Score=60.51 Aligned_cols=114 Identities=13% Similarity=0.089 Sum_probs=62.6
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHHcCCchH
Q 038364 817 SGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTMP-FKPDA----TIWGALLGSCRIHGHLEY 890 (1076)
Q Consensus 817 ~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m~-~~pd~----~~~~~Ll~a~~~~g~~e~ 890 (1076)
.++.+.+...++.+.++++-.|- ....-.+...+...|++++|.+.++... ..||. ..+..|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45555555555655554322210 1222234455566666666666666552 12332 233344555666677777
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHH
Q 038364 891 AEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHS 931 (1076)
Q Consensus 891 A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~ 931 (1076)
|+..++.. .-.+-.+..+..++++|.+.|++++|...+++
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77666552 22233345666778888888888888877765
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00039 Score=61.62 Aligned_cols=78 Identities=18% Similarity=0.261 Sum_probs=56.9
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHH
Q 038364 853 AGYLDEAWDFIRTM-PFKP---DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERL 928 (1076)
Q Consensus 853 ~G~l~eA~~l~~~m-~~~p---d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~ 928 (1076)
.|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|+++||.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45666777766665 1122 455666678888888888888888888 777777777777889999999999999988
Q ss_pred HHH
Q 038364 929 RHS 931 (1076)
Q Consensus 929 ~~~ 931 (1076)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00082 Score=56.94 Aligned_cols=64 Identities=17% Similarity=0.104 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcC-ChHHHHHHHHHHHh
Q 038364 871 DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSN-RWEDVERLRHSMDE 934 (1076)
Q Consensus 871 d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G-~~~eA~~~~~~m~~ 934 (1076)
++.+|..+...+...|++++|+..|+++++++|+++..|..++.+|.+.| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999 79999999988754
|
... |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0043 Score=58.50 Aligned_cols=93 Identities=16% Similarity=0.003 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC---chhHHHHHH
Q 038364 843 YSCMVDLLGKAGYLDEAWDFIRTM-PFKPD----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN---SANYNLMMN 914 (1076)
Q Consensus 843 y~~li~~l~r~G~l~eA~~l~~~m-~~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~---~~~y~~L~~ 914 (1076)
+...+..+.+.|++++|.+.++++ ...|+ ...+..+..++...|+++.|...+++++...|++ +..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444555555555555555554 11222 2234445555566666666666666666655553 334556666
Q ss_pred HHHHcCChHHHHHHHHHHHhC
Q 038364 915 LLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 915 ~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
+|.+.|++++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666665443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0011 Score=55.45 Aligned_cols=59 Identities=19% Similarity=0.229 Sum_probs=49.4
Q ss_pred HHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 878 LLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 878 Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
+...+...|++++|+..++++++.+|+++..+..++.++...|++++|.+.++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 44567788999999999999999999999999999999999999999999998886543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0057 Score=70.21 Aligned_cols=86 Identities=10% Similarity=0.062 Sum_probs=49.0
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHH
Q 038364 849 LLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVE 926 (1076)
Q Consensus 849 ~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~ 926 (1076)
.+.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++|.
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 344455555555555554 2222 33455555555666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHh
Q 038364 927 RLRHSMDE 934 (1076)
Q Consensus 927 ~~~~~m~~ 934 (1076)
+.+++..+
T Consensus 91 ~~~~~al~ 98 (356)
T PLN03088 91 AALEKGAS 98 (356)
T ss_pred HHHHHHHH
Confidence 66665543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.082 Score=66.29 Aligned_cols=217 Identities=11% Similarity=0.060 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHhcC--CCChh-HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 038364 431 LSVCNCLISMYSRNNKLELATRVFDSMK--DHNLS-SWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGH 507 (1076)
Q Consensus 431 ~~v~n~Li~~y~k~g~~~~A~~lf~~m~--~~d~~-s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~ 507 (1076)
...+..|++.|...+++++|.++.+.-. .|+.. .|-.+...+.+.++.+++..+ .+ +...
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l~~~ 93 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NL---------------IDSF 93 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hh---------------hhhc
Confidence 3455666666666666666666655432 22222 111111234444444443333 11 1222
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHH
Q 038364 508 FTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQ 587 (1076)
Q Consensus 508 ~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~ 587 (1076)
....++.-+..+...|.+.+ -+...+..+..+|.+.|..+++.++++.+++.. .-|+.+.|.+...|+.. ++++|.
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred ccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHH
Confidence 22233323333333333332 223345555566666677777777777777666 33666667777777777 777777
Q ss_pred HHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHh-cCCCC
Q 038364 588 EVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKN-SGIYP 666 (1076)
Q Consensus 588 ~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~-~gi~p 666 (1076)
.++.+... .|....++.++.+++.++... .|+.+.+ -.++.+.+.. .|...
T Consensus 170 ~m~~KAV~-----------~~i~~kq~~~~~e~W~k~~~~--~~~d~d~---------------f~~i~~ki~~~~~~~~ 221 (906)
T PRK14720 170 TYLKKAIY-----------RFIKKKQYVGIEEIWSKLVHY--NSDDFDF---------------FLRIERKVLGHREFTR 221 (906)
T ss_pred HHHHHHHH-----------HHHhhhcchHHHHHHHHHHhc--CcccchH---------------HHHHHHHHHhhhccch
Confidence 66655332 255555666666666666544 2222221 1222222222 12223
Q ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHhh
Q 038364 667 NVVTWTSLISGSLQNENYRESLKFFIQMQQ 696 (1076)
Q Consensus 667 d~~ty~~LI~~~~~~g~~~eAl~l~~~m~~ 696 (1076)
-+.++-.+...|-..++++++..+++...+
T Consensus 222 ~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~ 251 (906)
T PRK14720 222 LVGLLEDLYEPYKALEDWDEVIYILKKILE 251 (906)
T ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Confidence 334444455555556666666666666554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.64 Score=51.59 Aligned_cols=240 Identities=15% Similarity=0.151 Sum_probs=154.9
Q ss_pred CCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHH
Q 038364 681 NENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREV 760 (1076)
Q Consensus 681 ~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~v 760 (1076)
.|++++|.+-|+.|... .+--..-+..|.-...+.|+.+.+.++-+..-+. -..-.....++++..+..|+|+.|+++
T Consensus 133 eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~-Ap~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 133 EGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAAEK-APQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred cCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHhcCChHHHHHH
Confidence 46666666666666531 0111122334444455778888888887776653 122346678899999999999999999
Q ss_pred HHhcC-----CCChH--HHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHH
Q 038364 761 FRKSA-----NKTLA--SWNCMIMGFAI---YGNGKEAILLFHELLETGFQPDAITF-TALLAACKNSGLVEEGWKYFDS 829 (1076)
Q Consensus 761 f~~m~-----~~d~~--s~n~li~~~~~---~g~~~~Al~l~~~M~~~g~~Pd~~t~-~~ll~a~~~~g~~~eA~~~~~~ 829 (1076)
.+.-. ++|+. .--.|+.+-+. .-+...|...-.+..+ +.||-+.- ..-..++.+.|++.++-.+++.
T Consensus 211 vd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~ 288 (531)
T COG3898 211 VDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILET 288 (531)
T ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHH
Confidence 98644 34543 22233332222 2345666666666555 67887643 3334568899999999999999
Q ss_pred hhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC
Q 038364 830 MSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM----PFKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC 904 (1076)
Q Consensus 830 m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m----~~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~ 904 (1076)
+.+. .|.+..+... .+.|.|+. +..-+++. .++|+ .....++..+-...|++..|..-.+.+..++|.
T Consensus 289 aWK~---ePHP~ia~lY--~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr 361 (531)
T COG3898 289 AWKA---EPHPDIALLY--VRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR 361 (531)
T ss_pred HHhc---CCChHHHHHH--HHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch
Confidence 9754 5666554332 33455543 22222222 23454 445666777888899999999999999999997
Q ss_pred CchhHHHHHHHHHHc-CChHHHHHHHHHH
Q 038364 905 NSANYNLMMNLLAMS-NRWEDVERLRHSM 932 (1076)
Q Consensus 905 ~~~~y~~L~~~y~~~-G~~~eA~~~~~~m 932 (1076)
. ..|.+|+++-... |+-.++...+.+-
T Consensus 362 e-s~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 362 E-SAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred h-hHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 5 7899999987666 8877777666554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.016 Score=69.50 Aligned_cols=150 Identities=16% Similarity=0.093 Sum_probs=89.1
Q ss_pred CCChHHHHHHHHHHHHc--C---CHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC
Q 038364 766 NKTLASWNCMIMGFAIY--G---NGKEAILLFHELLETGFQPDAIT-FTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT 839 (1076)
Q Consensus 766 ~~d~~s~n~li~~~~~~--g---~~~~Al~l~~~M~~~g~~Pd~~t-~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~ 839 (1076)
..|...|...+.|.... + ..++|..+|++..+ ..||... +..+..++... ++..|.
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~----------------~~~~~~ 395 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVR----------------HSQQPL 395 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHH----------------HhcCCc
Confidence 45667777777664432 2 25678899999988 6888643 32222111100 011121
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM----PFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNL 915 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m----~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~ 915 (1076)
.. ++++.+.+..++. ....+..++.++.-.....|++++|...++++++++| +...|..++.+
T Consensus 396 ~~------------~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~ 462 (517)
T PRK10153 396 DE------------KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKV 462 (517)
T ss_pred cH------------HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 00 1222233332221 1233456666666666667888888888888888888 46788888888
Q ss_pred HHHcCChHHHHHHHHHHHhCCCccCcceEEEE
Q 038364 916 LAMSNRWEDVERLRHSMDEVGVKSVLVWSWIQ 947 (1076)
Q Consensus 916 y~~~G~~~eA~~~~~~m~~~g~~~~~~~swi~ 947 (1076)
|...|+.++|.+.+++..... +..|.+.|++
T Consensus 463 ~~~~G~~~eA~~~~~~A~~L~-P~~pt~~~~~ 493 (517)
T PRK10153 463 YELKGDNRLAADAYSTAFNLR-PGENTLYWIE 493 (517)
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCCchHHHHH
Confidence 888888888888888876655 3344555544
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0065 Score=57.27 Aligned_cols=103 Identities=15% Similarity=0.031 Sum_probs=65.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 038364 808 TALLAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD----ATIWGALLGS 881 (1076)
Q Consensus 808 ~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd----~~~~~~Ll~a 881 (1076)
..+...+...|++++|.+.|+.+...+.-.| ....+..+...+.+.|++++|.+.+++. ...|+ ..+|..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344445556666666666666654321111 1234455667777777777777777765 22233 4467777777
Q ss_pred HHHcCCchHHHHHHHHHhcCCCCCchhHH
Q 038364 882 CRIHGHLEYAEIASRRLFKLEPCNSANYN 910 (1076)
Q Consensus 882 ~~~~g~~e~A~~~~~~l~~l~P~~~~~y~ 910 (1076)
+...|+.+.|...++++++..|+++..+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 88888888888888888888888754443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.00 E-value=1.6 Score=53.66 Aligned_cols=183 Identities=14% Similarity=0.117 Sum_probs=85.1
Q ss_pred hCCCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChH---
Q 038364 270 SFGGEVQELLEVWGELHGKGVIFRSRILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVE--- 346 (1076)
Q Consensus 270 ~~g~~~~~al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~Li~~y~k~g~~~--- 346 (1076)
+.|.. ++|..+++.....+.. |..|+..+-..+.+.+..+++..+++++.+.- |+......+-.+|.+.+++.
T Consensus 55 r~gk~-~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 55 RLGKG-DEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HhcCc-hhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHH
Confidence 44555 5555444444333222 44455444444455555555555555554432 33444455555555555442
Q ss_pred -HHHHHHhhcCCCCChhhHHHHHHHHHhCCChh---------HHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCcHHH
Q 038364 347 -SANKLFSEVSDLEDDLLWNEIIMVKLRNEKWE---------NAIKLFREMQFSS-AKAISRTIVKMLQACAKVGAFHEG 415 (1076)
Q Consensus 347 -~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~---------eAl~lf~~M~~~g-~~p~~~t~~~ll~a~~~~g~~~~a 415 (1076)
.|.+++...|. +--.-|+.+--.+......+ -|.+.++.+.+.+ ---+..-..--+......|..++|
T Consensus 131 kaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ea 209 (932)
T KOG2053|consen 131 KAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEA 209 (932)
T ss_pred HHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHH
Confidence 34555555555 44445544322221111111 2333444444433 111111111222333455667777
Q ss_pred HHHHH-HHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhc
Q 038364 416 KQIHG-YVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSM 457 (1076)
Q Consensus 416 ~~i~~-~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m 457 (1076)
..++. .....-..-+...-|.-++++.+++++.+-.++-.+.
T Consensus 210 l~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 210 LEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 77663 2223333445555666677777777776655444433
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.022 Score=56.25 Aligned_cols=114 Identities=18% Similarity=0.123 Sum_probs=65.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC--cccHHHHHHHHHhcCC
Q 038364 782 YGNGKEAILLFHELLETGFQPDA----ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT--IEHYSCMVDLLGKAGY 855 (1076)
Q Consensus 782 ~g~~~~Al~l~~~M~~~g~~Pd~----~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~--~~~y~~li~~l~r~G~ 855 (1076)
.++..++...++++.+. .|+. .....+...+...|++++|...|+..... .-.|. ......+...+...|+
T Consensus 24 ~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCC
Confidence 56666666666666653 2333 12223334466667777777777766654 21121 1233345666677777
Q ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038364 856 LDEAWDFIRTMPF-KPDATIWGALLGSCRIHGHLEYAEIASRRL 898 (1076)
Q Consensus 856 l~eA~~l~~~m~~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l 898 (1076)
+++|+..++..+. ......+......+...|+.++|+..|+++
T Consensus 101 ~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 101 YDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7777777766532 223345555666677777777777777664
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0074 Score=61.64 Aligned_cols=94 Identities=12% Similarity=0.018 Sum_probs=70.4
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHH
Q 038364 841 EHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNL 915 (1076)
Q Consensus 841 ~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~ 915 (1076)
..+..+...|.+.|++++|...+++. ...|+ ...|..+...+...|+++.|+..+++++++.|++...+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34556666677777777777777665 12222 35788888889999999999999999999999998889999999
Q ss_pred HHHcCC--------------hHHHHHHHHHHHh
Q 038364 916 LAMSNR--------------WEDVERLRHSMDE 934 (1076)
Q Consensus 916 y~~~G~--------------~~eA~~~~~~m~~ 934 (1076)
|...|+ +++|.+++++..+
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 988877 4566666666544
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.063 Score=56.16 Aligned_cols=160 Identities=21% Similarity=0.204 Sum_probs=101.9
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCCCChHHHHHH---HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 038364 744 LIDMYSKSGNLKSAREVFRKSANKTLASWNCM---IMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLV 820 (1076)
Q Consensus 744 Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~l---i~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~ 820 (1076)
+.-+...+|+.+.|...++.+..+-+-++..+ ..-+-..|++++|+++++...+.. +.|.+++.-=+...-..|.-
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCc
Confidence 33344456677777777666553222222211 123445677788888888877754 44556666656556666776
Q ss_pred HHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHc---CCchHHHHHH
Q 038364 821 EEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMP-FKP-DATIWGALLGSCRIH---GHLEYAEIAS 895 (1076)
Q Consensus 821 ~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~-~~p-d~~~~~~Ll~a~~~~---g~~e~A~~~~ 895 (1076)
-+|++-+....+ .+.-|.+.|.-+.++|...|++++|.-.++++- +.| ++..+..+...+... .|++.|.+.+
T Consensus 137 l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 137 LEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred HHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 677777777665 355677788888888888888888888888762 344 344445555443333 3677788888
Q ss_pred HHHhcCCCCCc
Q 038364 896 RRLFKLEPCNS 906 (1076)
Q Consensus 896 ~~l~~l~P~~~ 906 (1076)
++.+++.|.+.
T Consensus 215 ~~alkl~~~~~ 225 (289)
T KOG3060|consen 215 ERALKLNPKNL 225 (289)
T ss_pred HHHHHhChHhH
Confidence 88888888553
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0067 Score=61.68 Aligned_cols=93 Identities=14% Similarity=-0.082 Sum_probs=74.2
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMN 914 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~ 914 (1076)
...|..++..+...|++++|...+++. ...|+ ..+|..+...+...|+.++|+..++++++++|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445666777777888899988888876 23232 3478889999999999999999999999999999988889998
Q ss_pred HHH-------HcCChHHHHHHHHHH
Q 038364 915 LLA-------MSNRWEDVERLRHSM 932 (1076)
Q Consensus 915 ~y~-------~~G~~~eA~~~~~~m 932 (1076)
+|. +.|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 788888666655543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.97 Score=53.47 Aligned_cols=124 Identities=19% Similarity=0.283 Sum_probs=61.5
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCCCChH---HHH----HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 038364 744 LIDMYSKSGNLKSAREVFRKSANKTLA---SWN----CMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKN 816 (1076)
Q Consensus 744 Li~~y~k~G~~~~A~~vf~~m~~~d~~---s~n----~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~ 816 (1076)
-|.++-+.|+.-+|.+++.+|.++... .|- ..+-+-.-..+..++++-.++....|...|... +..
T Consensus 929 aIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lle 1001 (1189)
T KOG2041|consen 929 AIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLE 1001 (1189)
T ss_pred HHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhh
Confidence 466788888888888887777643221 111 111111111233444444455555554433322 223
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHH
Q 038364 817 SGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMP----FKPDATIWGAL 878 (1076)
Q Consensus 817 ~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~----~~pd~~~~~~L 878 (1076)
.|...++-++.+...+ | ....|+-.|..--...|+++.|++.--.+. +-|-..+|..|
T Consensus 1002 s~~l~~~~ri~~n~Wr--g--AEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySll 1063 (1189)
T KOG2041|consen 1002 SGLLAEQSRILENTWR--G--AEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLL 1063 (1189)
T ss_pred hhhhhhHHHHHHhhhh--h--HHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHH
Confidence 3444455555443332 1 224455555566667888888887544332 33444455444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.013 Score=62.88 Aligned_cols=90 Identities=19% Similarity=0.190 Sum_probs=57.9
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCCc-ccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCchHH
Q 038364 815 KNSGLVEEGWKYFDSMSTDYNIIPTI-EHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPDAT-IWGALLGSCRIHGHLEYA 891 (1076)
Q Consensus 815 ~~~g~~~eA~~~~~~m~~~~g~~p~~-~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd~~-~~~~Ll~a~~~~g~~e~A 891 (1076)
.+.+++++|+..|.... .+.|+- .-|.--..+|.+-|..+.|.+=.+.. .+.|... .|..|..+|...|++++|
T Consensus 92 m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 34455666666665554 234442 33333455566666666666555544 3445433 788888888888888888
Q ss_pred HHHHHHHhcCCCCCch
Q 038364 892 EIASRRLFKLEPCNSA 907 (1076)
Q Consensus 892 ~~~~~~l~~l~P~~~~ 907 (1076)
++.|+++++++|++..
T Consensus 169 ~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 169 IEAYKKALELDPDNES 184 (304)
T ss_pred HHHHHhhhccCCCcHH
Confidence 8888888889888753
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.011 Score=68.07 Aligned_cols=118 Identities=17% Similarity=0.220 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHH
Q 038364 599 VAWNSLISGYCFKGLFVNAKKMLNQMEEE--EIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLIS 676 (1076)
Q Consensus 599 ~~~n~lI~~~~~~g~~~~A~~lf~~M~~~--g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~ 676 (1076)
+....++.......+.+++..++.+.+.. ...--..|..++|+.|.+.|..+++.++++.=...|+-||..++|.|++
T Consensus 67 ~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd 146 (429)
T PF10037_consen 67 LDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMD 146 (429)
T ss_pred HHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHH
Confidence 34444455555555566666666666544 1222233445677777777777777777776666777777777777777
Q ss_pred HHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcC
Q 038364 677 GSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGL 716 (1076)
Q Consensus 677 ~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~ 716 (1076)
.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 147 ~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 147 HFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777766666666666666666666544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.01 Score=68.43 Aligned_cols=82 Identities=18% Similarity=0.243 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 038364 464 SWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVT 543 (1076)
Q Consensus 464 s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~ 543 (1076)
|..++|+.|.+.|..++++++++.=...|+-||..|+|.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.
T Consensus 105 t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 105 THHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999998887788888877777776
Q ss_pred hc
Q 038364 544 EL 545 (1076)
Q Consensus 544 ~~ 545 (1076)
+.
T Consensus 185 ~~ 186 (429)
T PF10037_consen 185 KY 186 (429)
T ss_pred Hh
Confidence 55
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.018 Score=69.06 Aligned_cols=49 Identities=6% Similarity=0.035 Sum_probs=38.9
Q ss_pred chHHHHHHHHHhcC--CCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 888 LEYAEIASRRLFKL--EPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 888 ~e~A~~~~~~l~~l--~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
.+.+...+++...+ +|.++..|..++-.+...|++++|...+++..+..
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE 450 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 34555666665553 77778889999999889999999999999997766
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.02 Score=63.44 Aligned_cols=90 Identities=13% Similarity=0.092 Sum_probs=75.1
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCC-----CCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcC
Q 038364 847 VDLLGKAGYLDEAWDFIRTM-PFK-----PDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSN 920 (1076)
Q Consensus 847 i~~l~r~G~l~eA~~l~~~m-~~~-----pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G 920 (1076)
.+...+.|++.+|.+.+.+. .+. |++..|.....+..++|+.++|+.-.+.+++++|....+|..-++.+...+
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 35567899999999999886 344 445566666677788999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 038364 921 RWEDVERLRHSMDEVG 936 (1076)
Q Consensus 921 ~~~eA~~~~~~m~~~g 936 (1076)
+|++|.+-+++..+..
T Consensus 336 ~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999886654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.014 Score=53.33 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcC--------ChhhHHHHHHHHHhcCCCCCccc
Q 038364 464 SWNSMISSYTGLGYVDVAWSLFNKMNSSRI-QPDIITWNCLLSGHFTHG--------SYQNVLTLLRGMQSLGFRPNGSS 534 (1076)
Q Consensus 464 s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~-~pd~~ty~~Li~~~~~~g--------~~~~Al~l~~~m~~~gi~pd~~t 534 (1076)
|-...|..+...+++...-.+|+.+++.|+ .|++.+|+.++.+.++.. +.-+.+.+++.|...+++|+..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445567777777999999999999999999 999999999999988764 34567888999999999999999
Q ss_pred HHHHHHHHHh
Q 038364 535 VSVVLQAVTE 544 (1076)
Q Consensus 535 ~~~ll~a~~~ 544 (1076)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9988877653
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.13 Score=57.12 Aligned_cols=63 Identities=19% Similarity=0.166 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC---C-----CCCHH-HHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC
Q 038364 843 YSCMVDLLGKAGYLDEAWDFIRTMP---F-----KPDAT-IWGALLGSCRIHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 843 y~~li~~l~r~G~l~eA~~l~~~m~---~-----~pd~~-~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
+..+..++.+.|++++|.++|++.. . +.+.. .+...+-.+...||...|...+++..+.+|.-
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3445666777777777777776641 1 11111 12222334455678888888888888887754
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.024 Score=55.93 Aligned_cols=90 Identities=14% Similarity=0.040 Sum_probs=77.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCCh
Q 038364 845 CMVDLLGKAGYLDEAWDFIRTMP--FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRW 922 (1076)
Q Consensus 845 ~li~~l~r~G~l~eA~~l~~~m~--~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~ 922 (1076)
....-+...|++++|..+|+-+- ..-+..-|..|...|...++++.|...|..+..++++|+..+...+..|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 44455678999999999998762 2345667888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 038364 923 EDVERLRHSMDE 934 (1076)
Q Consensus 923 ~eA~~~~~~m~~ 934 (1076)
++|.+-++...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999998744
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.016 Score=50.82 Aligned_cols=59 Identities=20% Similarity=0.150 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCC
Q 038364 845 CMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEP 903 (1076)
Q Consensus 845 ~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P 903 (1076)
.+...+...|++++|.+.+++. .. +.+..+|..+...+...|+.+.|...++++++..|
T Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 39 NLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 3344444444444444444442 11 12223555555556666666666666666665554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.18 Score=58.79 Aligned_cols=229 Identities=11% Similarity=0.058 Sum_probs=126.8
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHH---------HHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHH--HHHHHcC
Q 038364 494 QPDIITWNCLLSGHFTHGSYQNVLTL---------LRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESH--GYILRNG 562 (1076)
Q Consensus 494 ~pd~~ty~~Li~~~~~~g~~~~Al~l---------~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~--~~~~~~g 562 (1076)
.|-.+.+.+-+..|...|.+++|.++ ++.+.... .+.-.+...=+||.+.+++..-+-+. +.+.++|
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~A--LeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg 630 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEA--LEALDFETARKAYIRVRDLRYLELISELEERKKRG 630 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccccceecchHHHHHHHH--HhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcC
Confidence 33455666667777777877777654 22222111 34445666667777777766554443 4556677
Q ss_pred CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhh
Q 038364 563 LDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSG 642 (1076)
Q Consensus 563 ~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~ 642 (1076)
-.|+.... .+.++-.|++.+|.++|.+ +|.-..|+++|..|+-- -...-
T Consensus 631 e~P~~iLl---A~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF----------D~aQE 679 (1081)
T KOG1538|consen 631 ETPNDLLL---ADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF----------DYAQE 679 (1081)
T ss_pred CCchHHHH---HHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH----------HHHHH
Confidence 76776543 3455667888888888875 34555666666655421 12233
Q ss_pred hhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHH------HhhcCC---CCChhhHHHHHHHH
Q 038364 643 YSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQ------MQQEDI---KPNSTTMSSLLQTC 713 (1076)
Q Consensus 643 y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~------m~~~gi---~pd~~t~~~lL~a~ 713 (1076)
|.+.|..++-..+.++-.+. ..|+.-=.+-...+..+|+.++|.++.-+ +.+-+- ..+..++..+...+
T Consensus 680 ~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~yl 757 (1081)
T KOG1538|consen 680 FLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYL 757 (1081)
T ss_pred HhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHH
Confidence 44445544444443332210 00000001122333445555555544221 111111 22334555555555
Q ss_pred hcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC
Q 038364 714 GGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN 766 (1076)
Q Consensus 714 ~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~ 766 (1076)
.+...+..|.++|..+-.. .+++++....++|++|..+-++.++
T Consensus 758 k~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 758 KKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 6677778888888766442 4688899999999999999888876
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.024 Score=65.12 Aligned_cols=103 Identities=16% Similarity=0.020 Sum_probs=73.1
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchH
Q 038364 814 CKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEY 890 (1076)
Q Consensus 814 ~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~ 890 (1076)
+...|++++|.++|+++.+. .|+ ...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|++++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 44556777777777766542 333 445666677777777777777777775 3344 45577788888888899999
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHHc
Q 038364 891 AEIASRRLFKLEPCNSANYNLMMNLLAMS 919 (1076)
Q Consensus 891 A~~~~~~l~~l~P~~~~~y~~L~~~y~~~ 919 (1076)
|+..++++++++|+++.....+..+..+.
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999998887777766654444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.04 Score=56.19 Aligned_cols=129 Identities=16% Similarity=0.130 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHH
Q 038364 769 LASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD--AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSC 845 (1076)
Q Consensus 769 ~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd--~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~ 845 (1076)
...|..+...+...|++++|+..|++..+....++ ...+..+...+.+.|++++|...+++..+. .|+ ...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence 34567777788888888888888888876433332 245666666778888888888888877653 343 445556
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCC
Q 038364 846 MVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNR 921 (1076)
Q Consensus 846 li~~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~ 921 (1076)
+..+|...|+...|..-++.. ...++.|...++++++++|++ |..+...+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 666777777666555433321 112577889999999999876 6666666666655
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0077 Score=64.47 Aligned_cols=90 Identities=17% Similarity=0.132 Sum_probs=79.6
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHH
Q 038364 847 VDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWED 924 (1076)
Q Consensus 847 i~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~e 924 (1076)
.+-+.+.+++++|+..+.+. .+.| |++.|..-..+|.+.|.++.|++..+.++.++|..+.+|..|+-+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 45577899999999999886 4554 666777778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 038364 925 VERLRHSMDEVG 936 (1076)
Q Consensus 925 A~~~~~~m~~~g 936 (1076)
|++.+++..+..
T Consensus 168 A~~aykKaLeld 179 (304)
T KOG0553|consen 168 AIEAYKKALELD 179 (304)
T ss_pred HHHHHHhhhccC
Confidence 999998876544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0016 Score=46.57 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=30.9
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHcCChHHHHH
Q 038364 895 SRRLFKLEPCNSANYNLMMNLLAMSNRWEDVER 927 (1076)
Q Consensus 895 ~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~ 927 (1076)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999963
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.077 Score=53.83 Aligned_cols=108 Identities=15% Similarity=0.113 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHH
Q 038364 770 ASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD--AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCM 846 (1076)
Q Consensus 770 ~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd--~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~l 846 (1076)
..|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|.+.++...+. .|+ ...+..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~l 112 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHHH
Confidence 4566777777778888888888888876432222 235666667777888888888888777642 232 3344455
Q ss_pred HHHHH-------hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC
Q 038364 847 VDLLG-------KAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 847 i~~l~-------r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
...|. +.|++++|... +++|...++++++.+|++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~-------------------------~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAW-------------------------FDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHH-------------------------HHHHHHHHHHHHHhCccc
Confidence 55555 33444433332 345667777888888864
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.51 E-value=2.3 Score=50.45 Aligned_cols=225 Identities=13% Similarity=0.088 Sum_probs=122.1
Q ss_pred ChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCcHHHHHHHHHH
Q 038364 344 DVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFS-SAKAISRTIVKMLQACAKVGAFHEGKQIHGYV 422 (1076)
Q Consensus 344 ~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~ 422 (1076)
.+++|.+..+.-| ....|..+...-.+.-.++-|...|-+.... |++ + +..-..+|..-
T Consensus 678 gledA~qfiEdnP---HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik--------~---------vkrl~~i~s~~ 737 (1189)
T KOG2041|consen 678 GLEDAIQFIEDNP---HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIK--------L---------VKRLRTIHSKE 737 (1189)
T ss_pred chHHHHHHHhcCC---chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchh--------H---------HHHhhhhhhHH
Confidence 3567777666544 4567877777666666666666666544321 211 0 01111222211
Q ss_pred HHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC--CChhhH
Q 038364 423 LKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQ--PDIITW 500 (1076)
Q Consensus 423 ~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~--pd~~ty 500 (1076)
. -.+=|.+| -|++++|.+++-.|.++|.. |.-+.+.|++-...++++.= ..+.. --..+|
T Consensus 738 ~----------q~aei~~~--~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g-~~d~dD~~~e~A~ 799 (1189)
T KOG2041|consen 738 Q----------QRAEISAF--YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNG-GSDDDDEGKEDAF 799 (1189)
T ss_pred H----------HhHhHhhh--hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHcc-CCCcchHHHHHHH
Confidence 1 12223333 37788888888888777753 44455556665555554321 00110 013467
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhC
Q 038364 501 NCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKN 580 (1076)
Q Consensus 501 ~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~ 580 (1076)
+.+...++....+++|.+.+..-... ...+.++.+..+++.-+.+- ..++-|....-.+.+|+...
T Consensus 800 r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~f~~LE~la-----~~Lpe~s~llp~~a~mf~sv 865 (1189)
T KOG2041|consen 800 RNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLELFGELEVLA-----RTLPEDSELLPVMADMFTSV 865 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHhhhhHHHHH-----HhcCcccchHHHHHHHHHhh
Confidence 77777777777777777766543211 12333444433333322221 12344555666777888888
Q ss_pred CCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038364 581 DCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQME 625 (1076)
Q Consensus 581 g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~ 625 (1076)
|.-++|.+.|-+-..|. +.+..|...+++.+|.++-+...
T Consensus 866 GMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 866 GMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred chHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888888777665542 33456666777777777766543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.013 Score=60.28 Aligned_cols=97 Identities=14% Similarity=0.294 Sum_probs=70.2
Q ss_pred HHHHHHhc--CCCChhHHHHHHHHHHhC-----CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-----------
Q 038364 450 ATRVFDSM--KDHNLSSWNSMISSYTGL-----GYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHG----------- 511 (1076)
Q Consensus 450 A~~lf~~m--~~~d~~s~n~lI~~~~~~-----g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g----------- 511 (1076)
-...|++. ..+|-.+|..+|..|.+. |+.+=....++.|.+-|+.-|..+|+.|++.+=+..
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 34556665 567777888888887654 677778888899999999999999999998875522
Q ss_pred -----ChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 038364 512 -----SYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELR 546 (1076)
Q Consensus 512 -----~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g 546 (1076)
+-+-|++++++|...|+.||..|+..+++.+.+.+
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 23456667777777776677666666666665544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.003 Score=53.24 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=44.2
Q ss_pred HHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 883 RIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 883 ~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
...|++++|+..++++++.+|++...+..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35688888999999999999998888889999999999999999888887543
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0071 Score=50.45 Aligned_cols=61 Identities=25% Similarity=0.267 Sum_probs=49.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCc
Q 038364 846 MVDLLGKAGYLDEAWDFIRTM-PFKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 846 li~~l~r~G~l~eA~~l~~~m-~~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~ 906 (1076)
+...+.+.|++++|.+.|++. ...|+ ...|..+..++...|++++|...++++++++|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788899999999999887 44564 55888899999999999999999999999999864
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0064 Score=52.01 Aligned_cols=58 Identities=16% Similarity=0.047 Sum_probs=50.4
Q ss_pred HHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 879 LGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 879 l~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
...+...++++.|..+++++++++|+++..+..++.+|.+.|++++|.+.+++..+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567788999999999999999999999999999999999999999999999886554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.17 Score=53.10 Aligned_cols=159 Identities=18% Similarity=0.224 Sum_probs=122.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHH
Q 038364 772 WNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAA-CKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLL 850 (1076)
Q Consensus 772 ~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a-~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l 850 (1076)
|..++-+....|+.+.|...++++... + |.+.-...+=.. +-..|++++|.++++++.++ . +-|..+|.--+-++
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d-d-pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED-D-PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc-C-cchhHHHHHHHHHH
Confidence 334455666788999999999998874 3 665433222221 55679999999999999876 2 33466777777777
Q ss_pred HhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCC---hHHH
Q 038364 851 GKAGYLDEAWDFIRTM--PFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNR---WEDV 925 (1076)
Q Consensus 851 ~r~G~l~eA~~l~~~m--~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~---~~eA 925 (1076)
-..|+--+|++-+.+. .+..|...|.-|...|...|+++.|.-.+|+++-+.|.++..+.-+++++.-.|- .+-|
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7788877888777665 4678999999999999999999999999999999999999999999998877665 4456
Q ss_pred HHHHHHHHh
Q 038364 926 ERLRHSMDE 934 (1076)
Q Consensus 926 ~~~~~~m~~ 934 (1076)
.+.+.+..+
T Consensus 211 rkyy~~alk 219 (289)
T KOG3060|consen 211 RKYYERALK 219 (289)
T ss_pred HHHHHHHHH
Confidence 666666543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.014 Score=59.87 Aligned_cols=96 Identities=18% Similarity=0.275 Sum_probs=59.9
Q ss_pred HHHHhhc--CCCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcC------------
Q 038364 587 QEVFDNM--KNRNIVAWNSLISGYCFK-----GLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWG------------ 647 (1076)
Q Consensus 587 ~~lf~~m--~~~d~~~~n~lI~~~~~~-----g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g------------ 647 (1076)
...|++. ..+|..+|..+|..|.+. |..+=....++.|.+-|+.-|..+|+.||+.+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3455554 446777777777777643 667777777788888888888888888888775522
Q ss_pred ----ChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCC
Q 038364 648 ----QSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNE 682 (1076)
Q Consensus 648 ----~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g 682 (1076)
+-+-|.+++++|...|+.||..++..+++.+++.+
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 22344555555555555555555555555554443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.67 Score=51.46 Aligned_cols=176 Identities=14% Similarity=0.157 Sum_probs=116.9
Q ss_pred cCCHHHHHHHHHhcC---CCChHHHHHHHH--HHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHH
Q 038364 751 SGNLKSAREVFRKSA---NKTLASWNCMIM--GFAIYGNGKEAILLFHELLETGFQPDAI--TFTALLAACKNSGLVEEG 823 (1076)
Q Consensus 751 ~G~~~~A~~vf~~m~---~~d~~s~n~li~--~~~~~g~~~~Al~l~~~M~~~g~~Pd~~--t~~~ll~a~~~~g~~~eA 823 (1076)
.|+-..|+++-.+.. ..|....--++. +-.-.|++++|.+-|+-|.. .|... -...|.-.--+.|..+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHH
Confidence 456666666554332 233333333332 22346788888888888875 34332 223333334567888888
Q ss_pred HHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHH--HHHHHHHH---HHHcCCchHHHH
Q 038364 824 WKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM----PFKPDAT--IWGALLGS---CRIHGHLEYAEI 893 (1076)
Q Consensus 824 ~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m----~~~pd~~--~~~~Ll~a---~~~~g~~e~A~~ 893 (1076)
+++-+... +..|. ...+.+.++..+..|+++.|+++++.- .+++|.. .--.|+.+ -....|...|..
T Consensus 174 r~yAe~Aa---~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 174 RHYAERAA---EKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHH---hhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 88877664 44565 446778888888899999999888765 2556544 22334433 233456778888
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 894 ASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 894 ~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
...+..++.|+-...-+.-+..|.+.|+..++.++++.+
T Consensus 251 ~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~a 289 (531)
T COG3898 251 DALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETA 289 (531)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHH
Confidence 889999999998888888899999999999999999888
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.061 Score=59.59 Aligned_cols=132 Identities=14% Similarity=0.118 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHH
Q 038364 771 SWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAA-CKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDL 849 (1076)
Q Consensus 771 s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a-~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~ 849 (1076)
+|..++....+.+..+.|..+|++.++.+ ......|...... +...++.+.|.++|+...+. +..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 56666666666666777777777776432 1122233332222 33356666688888888775 34456677788888
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC
Q 038364 850 LGKAGYLDEAWDFIRTM-PFKPD----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 850 l~r~G~l~eA~~l~~~m-~~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
+.+.|+.+.|..+|++. ..-|. ..+|...+.--.++|+.+....+.+++.+.-|++
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 88888888888888885 22232 3489999999899999999999998888887764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0064 Score=51.19 Aligned_cols=62 Identities=26% Similarity=0.304 Sum_probs=34.8
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHH
Q 038364 852 KAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMM 913 (1076)
Q Consensus 852 r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~ 913 (1076)
..|++++|.++++++ ...| +..++..+..+|...|++++|...++++...+|+++..+..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 455566666666554 2222 4455556666666666666666666666666666544444443
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.6 Score=50.47 Aligned_cols=169 Identities=12% Similarity=0.082 Sum_probs=107.5
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCCCCh---HH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHH
Q 038364 744 LIDMYSKSGNLKSAREVFRKSANKTL---AS---WNCMIMGFAIYGNGKEAILLFHELLETGFQPDA--ITFTALLAACK 815 (1076)
Q Consensus 744 Li~~y~k~G~~~~A~~vf~~m~~~d~---~s---~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~--~t~~~ll~a~~ 815 (1076)
....+.+.|++++|.+.|+......+ .. .-.++.+|-+.+++++|+..|++..+. .|+. +.+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHh
Confidence 44455678999999999988875322 22 224567788899999999999999873 4443 34444444433
Q ss_pred h--cC---------------C---HHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH
Q 038364 816 N--SG---------------L---VEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIW 875 (1076)
Q Consensus 816 ~--~g---------------~---~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~ 875 (1076)
+ .+ + ..+|.+.|+.+.++ |-.+.-..+|...+..+. +...-
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~---~~la~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLK---DRLAK 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHH---HHHHH
Confidence 2 11 1 12344444444443 333333455554444331 11111
Q ss_pred H--HHHHHHHHcCCchHHHHHHHHHhcCCCCC---chhHHHHHHHHHHcCChHHHHHHHHHHH
Q 038364 876 G--ALLGSCRIHGHLEYAEIASRRLFKLEPCN---SANYNLMMNLLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 876 ~--~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~---~~~y~~L~~~y~~~G~~~eA~~~~~~m~ 933 (1076)
. ....-|.+.|++.-|..-++.+++--|+. .++...|.+.|.+.|..++|.++.....
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1 23344788899999999999999887765 4568899999999999999999887663
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.097 Score=57.95 Aligned_cols=140 Identities=13% Similarity=0.057 Sum_probs=80.3
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHH-HHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 038364 499 TWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQA-VTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMY 577 (1076)
Q Consensus 499 ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a-~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y 577 (1076)
+|..++...-+.+..+.|..+|.+..+.+. .+...|...... +...++.+.|..||+..++. +..+...|...++++
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 344444444454445555555555543211 011111111111 22245556677777777665 455777788888888
Q ss_pred HhCCCHHHHHHHHhhcCC--C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhh
Q 038364 578 VKNDCLQNAQEVFDNMKN--R----NIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSG 642 (1076)
Q Consensus 578 ~k~g~~~~A~~lf~~m~~--~----d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~ 642 (1076)
.+.++.+.|+.+|++... + -...|...|.-=.+.|+.+.+.++.+++.+. -|+..++..+++-
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~r 149 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDR 149 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCC
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHH
Confidence 888999999999988765 2 3357888888888888888888888877764 3444444334333
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.0098 Score=52.60 Aligned_cols=79 Identities=23% Similarity=0.281 Sum_probs=36.0
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHH
Q 038364 782 YGNGKEAILLFHELLETGF-QPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEA 859 (1076)
Q Consensus 782 ~g~~~~Al~l~~~M~~~g~-~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA 859 (1076)
.|++++|+.+|+++.+..- .|+...+..+..++.+.|++++|.++++.. ...|+ ......+...|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3556666666666665321 112233333455555566666666655551 11121 12222334555555555555
Q ss_pred HHHHH
Q 038364 860 WDFIR 864 (1076)
Q Consensus 860 ~~l~~ 864 (1076)
++.++
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.021 Score=65.17 Aligned_cols=65 Identities=14% Similarity=-0.067 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchh---HHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 871 DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSAN---YNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 871 d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~---y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
+...|+.+..+|...|++++|+..++++++++|++..+ |+.++.+|...|+.++|.+.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45577777777777777777777777777777777644 777777777777777777777776554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.00 E-value=4 Score=46.61 Aligned_cols=204 Identities=11% Similarity=0.040 Sum_probs=112.1
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccc-------hhhhhhhhhhc----CChhHHHHHHHHhHhcCCCC
Q 038364 598 IVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVS-------WNSLVSGYSIW----GQSKEALVIIHHMKNSGIYP 666 (1076)
Q Consensus 598 ~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t-------~~~Li~~y~k~----g~~~~A~~lf~~m~~~gi~p 666 (1076)
+.++..+++...+.++..+|.+.+.-+..- .|+... -.++-+..+.. -+...=+.+++......+..
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr 375 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR 375 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH
Confidence 345666666777777777776666655533 232221 01222222211 12223334444444332221
Q ss_pred -chHHHHHH-HHHHhcCCC-hhHHHHHHHHHhhcCCCCCh-----hhHHHHHHHHhc---CCCchhHHHHHHHHHHcCCC
Q 038364 667 -NVVTWTSL-ISGSLQNEN-YRESLKFFIQMQQEDIKPNS-----TTMSSLLQTCGG---LGLLQNGKEIHCLCLKNGFI 735 (1076)
Q Consensus 667 -d~~ty~~L-I~~~~~~g~-~~eAl~l~~~m~~~gi~pd~-----~t~~~lL~a~~~---~g~~~~a~~i~~~~~~~g~~ 735 (1076)
..++|-.- ..-+-+.|. -++|+++++...+ +.|.. .++.-+=.+|.. ...+.+-..+-+.+.+.|+.
T Consensus 376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 12333221 233445555 7788888888765 33322 222222233332 23455666666777777887
Q ss_pred C----ChhhHHHHHHH--HhhcCCHHHHHHHHHhc--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 038364 736 K----DAYVATGLIDM--YSKSGNLKSAREVFRKS--ANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITF 807 (1076)
Q Consensus 736 ~----d~~~~~~Li~~--y~k~G~~~~A~~vf~~m--~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~ 807 (1076)
| +....|.|.++ +-..|++.++.-.-... ..|++.+|..+.-+.....++++|.+.|.. ++|+..++
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ 528 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMR 528 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhH
Confidence 6 33455666554 34568888876543333 357888888888888888899999888876 46677666
Q ss_pred HHH
Q 038364 808 TAL 810 (1076)
Q Consensus 808 ~~l 810 (1076)
.+=
T Consensus 529 dsk 531 (549)
T PF07079_consen 529 DSK 531 (549)
T ss_pred HHH
Confidence 554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=95.99 E-value=3.4 Score=45.77 Aligned_cols=93 Identities=14% Similarity=0.107 Sum_probs=46.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhc-CCCCCCcc--cHH
Q 038364 774 CMIMGFAIYGNGKEAILLFHELLETGFQ-----PDAI-TFTALLAACKNSGLVEEGWKYFDSMSTD-YNIIPTIE--HYS 844 (1076)
Q Consensus 774 ~li~~~~~~g~~~~Al~l~~~M~~~g~~-----Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~-~g~~p~~~--~y~ 844 (1076)
.+...+.+.|++++|+++|++....-.. .+.. .|...+-.+...|++..|.+.|++.... .++..+.+ ...
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~ 239 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLE 239 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence 3556677777777777777776653222 1111 2222222455567777777777776532 12222222 233
Q ss_pred HHHHHHHh--cCCHHHHHHHHHhC
Q 038364 845 CMVDLLGK--AGYLDEAWDFIRTM 866 (1076)
Q Consensus 845 ~li~~l~r--~G~l~eA~~l~~~m 866 (1076)
.|++++-. ...+++|..-|+.+
T Consensus 240 ~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 240 DLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHhCCHHHHHHHHHHHccc
Confidence 44444432 23455555555555
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.051 Score=49.81 Aligned_cols=45 Identities=9% Similarity=0.114 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCccchhhhhhhhhhc
Q 038364 602 NSLISGYCFKGLFVNAKKMLNQMEEEEI-KPDLVSWNSLVSGYSIW 646 (1076)
Q Consensus 602 n~lI~~~~~~g~~~~A~~lf~~M~~~g~-~pd~~t~~~Li~~y~k~ 646 (1076)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R 74 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKR 74 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHc
Confidence 3445555556777777777777777777 77777777777666554
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.07 Score=57.67 Aligned_cols=101 Identities=12% Similarity=0.056 Sum_probs=85.5
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHc---CCchHHHHHHHHHhcCCCCCchhHHHH
Q 038364 838 PTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIH---GHLEYAEIASRRLFKLEPCNSANYNLM 912 (1076)
Q Consensus 838 p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~---g~~e~A~~~~~~l~~l~P~~~~~y~~L 912 (1076)
-|.+.|.-|...|.+.|+.++|..-|.+. .+ .++...+..+..++... ....++..++++++.++|.|..+...|
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 35889999999999999999999999886 33 34566777777775443 346789999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCc
Q 038364 913 MNLLAMSNRWEDVERLRHSMDEVGVK 938 (1076)
Q Consensus 913 ~~~y~~~G~~~eA~~~~~~m~~~g~~ 938 (1076)
+..+...|++.+|...++.|.+...+
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999876643
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.79 E-value=6.7 Score=47.52 Aligned_cols=105 Identities=17% Similarity=0.171 Sum_probs=67.5
Q ss_pred HHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038364 745 IDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGW 824 (1076)
Q Consensus 745 i~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~ 824 (1076)
+.-+..-|+..+|.++-.+.+-+|-..|---+.+++..+++++-+++-+.+.. .+-|.-...+|.+.|+.+||.
T Consensus 691 v~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~ 764 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAK 764 (829)
T ss_pred HHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHh
Confidence 34445567777777777777777777777777777777777776665554431 233455567777777777777
Q ss_pred HHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHh
Q 038364 825 KYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRT 865 (1076)
Q Consensus 825 ~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~ 865 (1076)
+++.+.. |. .-.+.+|.+.|++.+|.++--+
T Consensus 765 KYiprv~---~l-------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 765 KYIPRVG---GL-------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hhhhccC---Ch-------HHHHHHHHHhccHHHHHHHHHH
Confidence 7765442 11 1356777777777777665433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.72 Score=46.15 Aligned_cols=129 Identities=12% Similarity=0.050 Sum_probs=92.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-C-----CCCCHH
Q 038364 800 FQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-P-----FKPDAT 873 (1076)
Q Consensus 800 ~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~-----~~pd~~ 873 (1076)
..|....-..|..+....|+..||...|++...- -+.-|....-.+..+....++..+|...+++. . -.||..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4566666666777788888888888888777641 23344556666677777778888888877775 2 234433
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 874 IWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 874 ~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
..+...+...|..+.|+..|+.++.--|. +..-......++++||.+||..-....
T Consensus 164 --Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 164 --LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred --HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 34567788899999999999999988775 466667788899999988887655444
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.58 E-value=5.1 Score=50.95 Aligned_cols=153 Identities=13% Similarity=0.124 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHhcCCHHHHHHHH
Q 038364 752 GNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAA----CKNSGLVEEGWKYF 827 (1076)
Q Consensus 752 G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a----~~~~g~~~eA~~~~ 827 (1076)
|++++|..-+.++. ...|+-.++--.+||.+.+|+.+ ++||...+.-+..+ |...+.+++|.-.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~l--------y~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALAL--------YKPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhe--------eccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 56666666655554 22344445555567777777766 35666655555444 44456666666555
Q ss_pred HHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCCchHHHHHHHHHhcCCCCC
Q 038364 828 DSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIW--GALLGSCRIHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 828 ~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~--~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
+..-+ ..--+.+|-.+|++.+|+.+-.++....|...- ..|..-+...++.-+|-++.++... +
T Consensus 963 e~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s-d--- 1028 (1265)
T KOG1920|consen 963 ERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS-D--- 1028 (1265)
T ss_pred HHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc-C---
Confidence 54311 012345666677777777777776544444432 4566667777766666665555432 1
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 906 SANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 906 ~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
+.--+..|+++-.|++|.++-..-
T Consensus 1029 ---~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1029 ---PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred ---HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 223355666777777777766554
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.55 E-value=5.5 Score=44.84 Aligned_cols=107 Identities=14% Similarity=0.162 Sum_probs=82.4
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHH
Q 038364 573 LMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEA 652 (1076)
Q Consensus 573 Li~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A 652 (1076)
-|.-+...|....|.++-.+..-||..-|-..|.+|+..++|++-.++-.. +-.++-|-.++..|.+.|...+|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHH
Confidence 355556678888888888888888888898999999999998877765432 23568888889999999998888
Q ss_pred HHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHh
Q 038364 653 LVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQ 695 (1076)
Q Consensus 653 ~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~ 695 (1076)
..+...+ ++..-+..|.+.|++.+|.+.-.+..
T Consensus 257 ~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 257 SKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 8888774 23566788888888888887755544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.018 Score=48.65 Aligned_cols=64 Identities=20% Similarity=0.249 Sum_probs=53.2
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-CchHHHHHHHHHhcCCC
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHG-HLEYAEIASRRLFKLEP 903 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g-~~e~A~~~~~~l~~l~P 903 (1076)
+..|..+...+.+.|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456777888888899999999888886 3445 4558888999999999 79999999999999887
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.14 Score=48.56 Aligned_cols=87 Identities=15% Similarity=-0.001 Sum_probs=61.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC---CchhHHHHHHHHH
Q 038364 846 MVDLLGKAGYLDEAWDFIRTM---PFKPD--ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC---NSANYNLMMNLLA 917 (1076)
Q Consensus 846 li~~l~r~G~l~eA~~l~~~m---~~~pd--~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~---~~~~y~~L~~~y~ 917 (1076)
+..++-..|+.++|..++++. +.... ...+-.+.+.++..|++++|+.++++..+-.|+ +......++..+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 345566667777777777664 21111 225556777888888888888888888887777 5566677788888
Q ss_pred HcCChHHHHHHHHHH
Q 038364 918 MSNRWEDVERLRHSM 932 (1076)
Q Consensus 918 ~~G~~~eA~~~~~~m 932 (1076)
..|+.+||.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 889999988877553
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.072 Score=58.07 Aligned_cols=93 Identities=12% Similarity=0.021 Sum_probs=57.1
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC---chhHHHHH
Q 038364 842 HYSCMVDLLGKAGYLDEAWDFIRTM-PFKPDA----TIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN---SANYNLMM 913 (1076)
Q Consensus 842 ~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd~----~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~---~~~y~~L~ 913 (1076)
.|..-++.+.+.|++++|...|+.. ...|+. ..+..+..++...|+++.|...|+++++..|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445556666666666554 122332 345556666777777777777777777666654 34455567
Q ss_pred HHHHHcCChHHHHHHHHHHHh
Q 038364 914 NLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 914 ~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
.+|.+.|++++|.+++++..+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777777644
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=1.3 Score=47.89 Aligned_cols=58 Identities=7% Similarity=-0.038 Sum_probs=33.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCChhhH---HHHHHHHHhcCChhhHHHHHHHHHhcC
Q 038364 469 ISSYTGLGYVDVAWSLFNKMNSSRIQPDIITW---NCLLSGHFTHGSYQNVLTLLRGMQSLG 527 (1076)
Q Consensus 469 I~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty---~~Li~~~~~~g~~~~Al~l~~~m~~~g 527 (1076)
...+.+.|++++|.+.|+++...-+.+ ...- -.+..++.+.+++++|...+++..+..
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 334455667777777777766654332 2221 234455666677777777777766654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.40 E-value=1 Score=51.05 Aligned_cols=160 Identities=18% Similarity=0.150 Sum_probs=93.9
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCCC---Ch----HHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038364 744 LIDMYSKSGNLKSAREVFRKSANK---TL----ASWNCMIMGFAI---YGNGKEAILLFHELLETGFQPDAITFTALLAA 813 (1076)
Q Consensus 744 Li~~y~k~G~~~~A~~vf~~m~~~---d~----~s~n~li~~~~~---~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a 813 (1076)
|+-.|-...+++...++.+.+... ++ ..--...-++.+ .|+.++|+.++..+....-.++..|+..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 444577777777777777776643 11 111123344455 67888888888776655556666666555444
Q ss_pred HHh---------cCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHH----HHHHHH---Hh-C------CCCC
Q 038364 814 CKN---------SGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLD----EAWDFI---RT-M------PFKP 870 (1076)
Q Consensus 814 ~~~---------~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~----eA~~l~---~~-m------~~~p 870 (1076)
|-. ....++|.+.|.+. +.+.|+..+--.++.++..+|.-. +..++. .. . .-..
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 321 22356677666654 344555433223334444444322 222222 11 1 1234
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCc
Q 038364 871 DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 871 d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~ 906 (1076)
|-..+.+++.++.-.||.+.|.+++++++.+.|...
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 555668899999999999999999999999988754
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.12 Score=48.40 Aligned_cols=90 Identities=16% Similarity=0.097 Sum_probs=75.9
Q ss_pred HHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCc----hhHHHHHHHHHHcCC
Q 038364 848 DLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNS----ANYNLMMNLLAMSNR 921 (1076)
Q Consensus 848 ~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~----~~y~~L~~~y~~~G~ 921 (1076)
-+++..|++++|++.|.+. . .+.....||.-..+++-+|+.++|+.-+++++++.-+.. ..|+..+-+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3577889999999999886 2 345678999999999999999999999999999854332 348899999999999
Q ss_pred hHHHHHHHHHHHhCCC
Q 038364 922 WEDVERLRHSMDEVGV 937 (1076)
Q Consensus 922 ~~eA~~~~~~m~~~g~ 937 (1076)
.++|..-|+...+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999999887774
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.25 E-value=4.2 Score=41.70 Aligned_cols=194 Identities=22% Similarity=0.178 Sum_probs=132.3
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHhcCC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038364 738 AYVATGLIDMYSKSGNLKSAREVFRKSAN-----KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLA 812 (1076)
Q Consensus 738 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~ 812 (1076)
...+......+...+.+..+...+..... .....+..+...+...++..++++.+.........+.. .......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL-AEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch-HHHHHHH
Confidence 45566677777777777777777766532 33445666667777777788888888887764333322 1222222
Q ss_pred -HHHhcCCHHHHHHHHHHhhhcCCCCC----CcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHH
Q 038364 813 -ACKNSGLVEEGWKYFDSMSTDYNIIP----TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD--ATIWGALLGSCRI 884 (1076)
Q Consensus 813 -a~~~~g~~~eA~~~~~~m~~~~g~~p----~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd--~~~~~~Ll~a~~~ 884 (1076)
.+...|+.+++...+..... ..| ....+......+...++.++|...+.+. ...++ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 57788888888888887743 222 2233344444466778888888888776 33333 5677888888888
Q ss_pred cCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 885 HGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 885 ~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
.++.+.|...+....+..|.....+..+...+...|+++++...+.+..+.
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888999999999999888876666777777777777788888888777543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.031 Score=42.58 Aligned_cols=42 Identities=26% Similarity=0.396 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHH
Q 038364 873 TIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMN 914 (1076)
Q Consensus 873 ~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~ 914 (1076)
.+|..+..++...|++++|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367888999999999999999999999999999888877764
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.064 Score=45.70 Aligned_cols=64 Identities=19% Similarity=0.243 Sum_probs=51.4
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHH
Q 038364 848 DLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNL 911 (1076)
Q Consensus 848 ~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~ 911 (1076)
..|.+.+++++|.+.++.+ ...| +...|......+...|+++.|...++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 5678889999999998887 3444 45577788888999999999999999999999987655433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.31 Score=46.22 Aligned_cols=91 Identities=16% Similarity=0.213 Sum_probs=65.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHH
Q 038364 775 MIMGFAIYGNGKEAILLFHELLETGFQPDA--ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLG 851 (1076)
Q Consensus 775 li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~--~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~ 851 (1076)
+..++-..|+.++|+.+|++..+.|..... ..+..+-+++...|++++|..+++.....+.-.+ +......+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 456677889999999999999998877653 3566777788999999999999998876532111 1122223445677
Q ss_pred hcCCHHHHHHHHHh
Q 038364 852 KAGYLDEAWDFIRT 865 (1076)
Q Consensus 852 r~G~l~eA~~l~~~ 865 (1076)
..|+.+||.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88888888877654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.44 Score=46.98 Aligned_cols=91 Identities=12% Similarity=-0.011 Sum_probs=70.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC
Q 038364 743 GLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSG 818 (1076)
Q Consensus 743 ~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g 818 (1076)
.+...+...|++++|.++|+-... .+..-|-.|...+...|++++|+..|..... +.||. .++-.+-.++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHcC
Confidence 455556778999999999986653 3456788888899999999999999999888 44554 56666777788889
Q ss_pred CHHHHHHHHHHhhhcCC
Q 038364 819 LVEEGWKYFDSMSTDYN 835 (1076)
Q Consensus 819 ~~~eA~~~~~~m~~~~g 835 (1076)
+.+.|++.|+......+
T Consensus 118 ~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 118 NVCYAIKALKAVVRICG 134 (157)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999988776533
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.088 Score=58.28 Aligned_cols=129 Identities=9% Similarity=-0.020 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH---hhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCCHH
Q 038364 806 TFTALLAACKNSGLVEEGWKYFDS---MSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-------P-FKPDAT 873 (1076)
Q Consensus 806 t~~~ll~a~~~~g~~~eA~~~~~~---m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-------~-~~pd~~ 873 (1076)
.|..|-+.|.-.|+++.|+...+. +.+++|-... ...++.+.+.+.-.|.++.|.+.++.. + -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 344455555557788888776553 2233443322 345677788888888888888887763 1 112344
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhcC----C--CCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 874 IWGALLGSCRIHGHLEYAEIASRRLFKL----E--PCNSANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 874 ~~~~Ll~a~~~~g~~e~A~~~~~~l~~l----~--P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
...+|.+.|....+++.|+..+.+=+.+ + .....+|..|++.|...|.-+.|..+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5667888888888888888887764432 2 12346788999999999998888887766544
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.37 Score=48.13 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=91.2
Q ss_pred hcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC--Cc
Q 038364 832 TDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM---PFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC--NS 906 (1076)
Q Consensus 832 ~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m---~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~--~~ 906 (1076)
++..+.|++.+-..|...+.+.|+..||...|++. .+.-|......+.++....++..+|...++.+.+-+|. .+
T Consensus 81 ~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 81 EELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred HHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 33466788888889999999999999999999987 46778889999999999999999999999999998875 46
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 907 ANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 907 ~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
.....++..|...|+..+|+.-++.....
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 67889999999999999999999887554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.36 Score=47.55 Aligned_cols=106 Identities=19% Similarity=0.297 Sum_probs=71.5
Q ss_pred HHhcCCHHHHHHHHHHhhhcCC--CCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHH
Q 038364 814 CKNSGLVEEGWKYFDSMSTDYN--IIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYA 891 (1076)
Q Consensus 814 ~~~~g~~~eA~~~~~~m~~~~g--~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A 891 (1076)
....|+.+++...+..+...+. +-|+... ...+......++++- ..+...++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~----~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY----LDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH----HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCHHHH
Confidence 3456777777777777765442 1222111 122222333333321 23456677788899999999
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 038364 892 EIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 892 ~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~ 933 (1076)
...+++++.++|-+-..|..+..+|.+.|+..+|.+++++++
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999874
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.65 E-value=1.2 Score=46.87 Aligned_cols=164 Identities=11% Similarity=0.025 Sum_probs=89.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcCC--CChHHH--------HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 038364 741 ATGLIDMYSKSGNLKSAREVFRKSAN--KTLASW--------NCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTAL 810 (1076)
Q Consensus 741 ~~~Li~~y~k~G~~~~A~~vf~~m~~--~d~~s~--------n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~l 810 (1076)
+++|+..|.-..-.++-...|+.-.. ..+..| +.|+..+.-+|.+.-.+.++++.++..-+-+.+....|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 34555555544444444444443322 222233 56777777788888888899999886545566666777
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHH-----HHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH
Q 038364 811 LAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSC-----MVDLLGKAGYLDEAWDFIRTMPF--KPDATIWGALLGSCR 883 (1076)
Q Consensus 811 l~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~-----li~~l~r~G~l~eA~~l~~~m~~--~pd~~~~~~Ll~a~~ 883 (1076)
.+.-.+.|+++.|..+|+...+..+ ..+....+. +...|.-+.++.+|...+.+.+. ..|+..-|+-.-...
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 7777889999999999987765422 222222222 22333444455555555555431 112222222222222
Q ss_pred HcCCchHHHHHHHHHhcCCCCC
Q 038364 884 IHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 884 ~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
-.|+...|.+..+.+.+..|..
T Consensus 298 Ylg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHHHHhccCCcc
Confidence 3455555555555555555543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.28 Score=55.01 Aligned_cols=83 Identities=12% Similarity=0.072 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCCCccCcceEEEEECCEE
Q 038364 873 TIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVGVKSVLVWSWIQIDQIV 952 (1076)
Q Consensus 873 ~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g~~~~~~~swi~~~~~~ 952 (1076)
.++..|...|.+.+++..|+....+.++++|+|..+.+--+.+|...|.++.|...|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~----------------- 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL----------------- 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh-----------------
Confidence 356667777889999999999999999999999999999999999999999999999999542
Q ss_pred EEEEeCCCCCcCcHHHHHHHHHHHHHHHH
Q 038364 953 HVFSAEGAPHPATGEIYFELYHLVSEMKK 981 (1076)
Q Consensus 953 ~~f~~~~~~~~~~~~i~~~l~~l~~~m~~ 981 (1076)
.|....|..++..+.+++++
T Consensus 321 ---------~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 321 ---------EPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred ---------CCCcHHHHHHHHHHHHHHHH
Confidence 35556677677666665554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.31 E-value=17 Score=44.25 Aligned_cols=308 Identities=10% Similarity=0.112 Sum_probs=166.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC---cHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 038364 365 NEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGA---FHEGKQIHGYVLKSALESNLSVCNCLISMY 441 (1076)
Q Consensus 365 n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~---~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y 441 (1076)
..+|.-++..+.+..|+++-..|...-..- ...|.....-..+..+ -+.+..|-.++.. -.. +...|..+..--
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~-~~~-~~iSy~~iA~~A 517 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA-KLT-PGISYAAIARRA 517 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcc-cCC-CceeHHHHHHHH
Confidence 456778888888999988887775332222 4445555544444422 2222222222211 122 333455555555
Q ss_pred HhCCChHHHHHHHHhcCCC--------ChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCC----------CC-ChhhHHH
Q 038364 442 SRNNKLELATRVFDSMKDH--------NLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRI----------QP-DIITWNC 502 (1076)
Q Consensus 442 ~k~g~~~~A~~lf~~m~~~--------d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~----------~p-d~~ty~~ 502 (1076)
..+|+.+.|+++.+.=+.. +.--+..-+.-..+.|+.+-...++..|...-. .| ....|--
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~ 597 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQ 597 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHH
Confidence 6789999999888764321 122345556666777777766666655543210 00 1111111
Q ss_pred HHH--------HHHhcCChhhHHHHHHHHH------hcCCCCCcccHHHHHHHHHhcCchHHHHHHH-HHH--H------
Q 038364 503 LLS--------GHFTHGSYQNVLTLLRGMQ------SLGFRPNGSSVSVVLQAVTELRLLKYGRESH-GYI--L------ 559 (1076)
Q Consensus 503 Li~--------~~~~~g~~~~Al~l~~~m~------~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~-~~~--~------ 559 (1076)
+++ .+.+.++-.+++.-|..=. ..|..|+ ....-++|++......+.+.. +.+ +
T Consensus 598 ~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~L 674 (829)
T KOG2280|consen 598 FMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTL 674 (829)
T ss_pred HHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 111 1111222222222111100 0122222 333344555444322211111 111 1
Q ss_pred --HcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchh
Q 038364 560 --RNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWN 637 (1076)
Q Consensus 560 --~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~ 637 (1076)
+.|....-.+.+--+.-+..-|+..+|.++-.+..-||-..|-.-+.+++..+++++-+++-..+. ..+-|-
T Consensus 675 e~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~ 748 (829)
T KOG2280|consen 675 EDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYL 748 (829)
T ss_pred HHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCch
Confidence 122222222233334455667888888888888888888888888888888888887776655543 467777
Q ss_pred hhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHH
Q 038364 638 SLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQ 693 (1076)
Q Consensus 638 ~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~ 693 (1076)
-.+..|.+.|+.++|.+++.+.... .-.+.+|.+.|++.+|.++--+
T Consensus 749 PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 749 PFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHHH
Confidence 8888888888888888888776321 1567788888888887776444
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=94.25 E-value=12 Score=42.20 Aligned_cols=107 Identities=13% Similarity=0.068 Sum_probs=57.4
Q ss_pred ccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcC
Q 038364 533 SSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKG 612 (1076)
Q Consensus 533 ~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g 612 (1076)
.+.+..+.-|...|....|.++-... . -||...|-.-+.+|++.+++++-.+.... .++++.|-..+..+.+.|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCC
Confidence 34444555555555555554443222 1 24555556666666666666655554432 345566666666666666
Q ss_pred ChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHH
Q 038364 613 LFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVI 655 (1076)
Q Consensus 613 ~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~l 655 (1076)
+..+|...... +++..-+.+|.++|++.+|.+.
T Consensus 252 ~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 252 NKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHH
Confidence 66666655544 2224455566666666665544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.061 Score=46.60 Aligned_cols=60 Identities=10% Similarity=0.026 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhcC----CCCC---chhHHHHHHHHHHcCChHHHHHHHHHHH
Q 038364 874 IWGALLGSCRIHGHLEYAEIASRRLFKL----EPCN---SANYNLMMNLLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 874 ~~~~Ll~a~~~~g~~e~A~~~~~~l~~l----~P~~---~~~y~~L~~~y~~~G~~~eA~~~~~~m~ 933 (1076)
+++.+...+...|++++|+..+++++++ .+++ ..++..++.+|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666666777777777777666543 2222 3457888888888888888888887753
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.7 Score=50.43 Aligned_cols=92 Identities=13% Similarity=0.063 Sum_probs=55.7
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCCc
Q 038364 815 KNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTMP-FKPD----ATIWGALLGSCRIHGHL 888 (1076)
Q Consensus 815 ~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m~-~~pd----~~~~~~Ll~a~~~~g~~ 888 (1076)
...|++++|...|+.+.+.+.-.+- ...+..+...|...|++++|...|+++. ..|+ ...|..+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 3445666666666665554311110 1244556666666677777766666651 1122 33455556667788899
Q ss_pred hHHHHHHHHHhcCCCCCc
Q 038364 889 EYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 889 e~A~~~~~~l~~l~P~~~ 906 (1076)
+.|...++++++..|++.
T Consensus 234 ~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHHHCcCCH
Confidence 999999999998888763
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.7 Score=53.28 Aligned_cols=153 Identities=19% Similarity=0.145 Sum_probs=95.1
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 038364 781 IYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAW 860 (1076)
Q Consensus 781 ~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~ 860 (1076)
+..+.++-+++-++.++ +.||..+-..+| |--.+..+.|+.+++++..+. | ...+.. -......|. ..
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~-s~~~~~~g~---~~ 247 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGK-SQFLQHHGH---FW 247 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhch-hhhhhcccc---hh
Confidence 34556666677777776 678887655544 233455688899988887653 1 000000 000001111 11
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC--CchhHHHHHHHHHHcCChHHHHHHHHHHHhCCCc
Q 038364 861 DFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC--NSANYNLMMNLLAMSNRWEDVERLRHSMDEVGVK 938 (1076)
Q Consensus 861 ~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~--~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g~~ 938 (1076)
+.+.+-...|-..+=..|...+++.|+.++|++.++.+++..|. +......|++.|-..+++.|+..++.+-.+..++
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 11111112223334455777788999999999999999987664 4557888999999999999999999998766666
Q ss_pred cCcceEE
Q 038364 939 SVLVWSW 945 (1076)
Q Consensus 939 ~~~~~sw 945 (1076)
+...++|
T Consensus 328 kSAti~Y 334 (539)
T PF04184_consen 328 KSATICY 334 (539)
T ss_pred chHHHHH
Confidence 6554444
|
The molecular function of this protein is uncertain. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.52 Score=45.12 Aligned_cols=84 Identities=18% Similarity=0.258 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHh--------------hhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC---
Q 038364 804 AITFTALLAACKNSGLVEEGWKYFDSM--------------STDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM--- 866 (1076)
Q Consensus 804 ~~t~~~ll~a~~~~g~~~eA~~~~~~m--------------~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m--- 866 (1076)
..++..++-++++.|+++....+.+.. .......|+..+..+++.+|+..|++..|+++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 344555555555555555555555433 112245567777778888888888888888777664
Q ss_pred -CCCCCHHHHHHHHHHHHHcCC
Q 038364 867 -PFKPDATIWGALLGSCRIHGH 887 (1076)
Q Consensus 867 -~~~pd~~~~~~Ll~a~~~~g~ 887 (1076)
+++-+..+|..|+.-+...-+
T Consensus 82 Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred cCCCCCHHHHHHHHHHHHHhcC
Confidence 455557788888866655443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.60 E-value=3.6 Score=43.62 Aligned_cols=139 Identities=14% Similarity=0.085 Sum_probs=97.7
Q ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCC----CChhHHHHHH----
Q 038364 398 TIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKD----HNLSSWNSMI---- 469 (1076)
Q Consensus 398 t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~lI---- 469 (1076)
...+++...-..+.+.-....+..+++...+.++.....|..+-...||.+.|...|+.+.+ -|-.+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 33455555555666666667777777777777888888888888888999999888886542 1222333322
Q ss_pred -HHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHH
Q 038364 470 -SSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVL 539 (1076)
Q Consensus 470 -~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll 539 (1076)
..|.-..++.+|...|.+....+.. |.+.-|.-.-+..-.|+..+|++.++.|.+.- |...+-.+++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~es~~ 326 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHESVL 326 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccC--CccchhhhHH
Confidence 3455567788888888888877665 77777776667777788999999999988765 6665555444
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.22 E-value=5.5 Score=37.84 Aligned_cols=140 Identities=14% Similarity=0.125 Sum_probs=81.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHH
Q 038364 780 AIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEA 859 (1076)
Q Consensus 780 ~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA 859 (1076)
...|..++..++..+.... .+..-++-++.-...+-+-+-..+.++++-+-+.+.|-. ....++..|.+.|...|
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~~se- 87 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNKLSE- 87 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT---H-
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcchHH-
Confidence 3456777777777776652 233334444443334444455566666664443333321 12234555555544333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCCCc
Q 038364 860 WDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVGVK 938 (1076)
Q Consensus 860 ~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g~~ 938 (1076)
-....+++....|.-|+-.+++..+++-+..+|+...-++++|.+.|...+|.+++++.=++|++
T Consensus 88 --------------~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 --------------YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred --------------HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33455677788899999999999888655556788999999999999999999999999998875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=93.13 E-value=6.5 Score=41.18 Aligned_cols=151 Identities=14% Similarity=0.143 Sum_probs=69.6
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC
Q 038364 368 IMVKLRNEKWENAIKLFREMQFSSA--KAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNN 445 (1076)
Q Consensus 368 i~~~~~~g~~~eAl~lf~~M~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g 445 (1076)
...+.+.|++.+|++.|+++...-. +--......+..++-+.|+.+.|...++..++.-+.....-+...+.+.+...
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3445566777777777777664311 11122334455566666677777666666665543322222222222221111
Q ss_pred ChHHHHHHHHhcCCCCh-------hHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHH
Q 038364 446 KLELATRVFDSMKDHNL-------SSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLT 518 (1076)
Q Consensus 446 ~~~~A~~lf~~m~~~d~-------~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~ 518 (1076)
... ..+ ...+|. ..+..+|.-|=.+....+|......+.+. =...--.+...|.+.|.+..|..
T Consensus 92 ~~~---~~~--~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 92 QIP---GIL--RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHH---HHH---TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHHH
T ss_pred hCc---cch--hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHHH
Confidence 110 000 111221 13455566666666666665555554332 00011124556777778888877
Q ss_pred HHHHHHhcC
Q 038364 519 LLRGMQSLG 527 (1076)
Q Consensus 519 l~~~m~~~g 527 (1076)
-++.+.+.-
T Consensus 163 r~~~v~~~y 171 (203)
T PF13525_consen 163 RFQYVIENY 171 (203)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHC
Confidence 777777664
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.38 Score=51.03 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=48.7
Q ss_pred HHHHHHhhcC--CCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcC
Q 038364 585 NAQEVFDNMK--NRNIVAWNSLISGYCFK-----GLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWG 647 (1076)
Q Consensus 585 ~A~~lf~~m~--~~d~~~~n~lI~~~~~~-----g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g 647 (1076)
..++.|.... ++|-.+|-+++..+... +..+-....++.|.+-|++.|..+|+.||+.+-|..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk 121 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK 121 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc
Confidence 4456777776 57888888888877654 567777778888999999999999999988876543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.45 Score=50.48 Aligned_cols=97 Identities=12% Similarity=0.245 Sum_probs=67.7
Q ss_pred HHHHHHhcC--CCChhHHHHHHHHHHhC-----CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-----------
Q 038364 450 ATRVFDSMK--DHNLSSWNSMISSYTGL-----GYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHG----------- 511 (1076)
Q Consensus 450 A~~lf~~m~--~~d~~s~n~lI~~~~~~-----g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g----------- 511 (1076)
.++.|...+ ++|-.+|-+++..+... ++++-....++.|.+-|+..|..+|+.||+.+-+-.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 456677776 78888999999888654 567777788899999999999999999998765532
Q ss_pred -----ChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 038364 512 -----SYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELR 546 (1076)
Q Consensus 512 -----~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g 546 (1076)
+-+-+++++++|...|+.||..+-..+++++.+.+
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 12334555555555555555555555555554443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.11 Score=44.99 Aligned_cols=59 Identities=22% Similarity=0.249 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcC
Q 038364 843 YSCMVDLLGKAGYLDEAWDFIRTM-------P-FKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKL 901 (1076)
Q Consensus 843 y~~li~~l~r~G~l~eA~~l~~~m-------~-~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l 901 (1076)
|+.+...|.+.|++++|++.+++. + ..|+ ..++..+...+...|++++|+..+++.+++
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 444444555555555555444443 1 1122 346666777777778888888777776643
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.76 E-value=8 Score=43.75 Aligned_cols=54 Identities=15% Similarity=0.061 Sum_probs=26.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 038364 777 MGFAIYGNGKEAILLFHELLET---GFQPDAITFTALLAACKNSGLVEEGWKYFDSM 830 (1076)
Q Consensus 777 ~~~~~~g~~~~Al~l~~~M~~~---g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m 830 (1076)
+-..+.|++.+|.+.|.+.+.. +++|+...|.....+..+.|+.++|+.--+..
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 3344556666666666665541 12222233433334455566666665554443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.70 E-value=3.9 Score=47.33 Aligned_cols=158 Identities=15% Similarity=0.134 Sum_probs=93.9
Q ss_pred HHH--HHHHHHHHHc-----CCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHh----------cCCHHHHHHHHHHhh
Q 038364 770 ASW--NCMIMGFAIY-----GNGKEAILLFHELL-ETGFQPDAITFTALLAACKN----------SGLVEEGWKYFDSMS 831 (1076)
Q Consensus 770 ~s~--n~li~~~~~~-----g~~~~Al~l~~~M~-~~g~~Pd~~t~~~ll~a~~~----------~g~~~eA~~~~~~m~ 831 (1076)
..| ..++.|.... ...+.|+.+|.+.. ...+.|+-..-...+.-|.. .....+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 5556555542 13456888898888 22367776543333332221 223445555555554
Q ss_pred hcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchh
Q 038364 832 TDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPDA-TIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSAN 908 (1076)
Q Consensus 832 ~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd~-~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~ 908 (1076)
+ +.| |+.....+..++.-.|+++.|..+|++. ...||. .+|......+...|+.++|.+.+++.++++|....+
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 3 223 3445556666667777788888888776 355554 366666666777888888888888888888876544
Q ss_pred HH--HHHHHHHHcCChHHHHHHHHH
Q 038364 909 YN--LMMNLLAMSNRWEDVERLRHS 931 (1076)
Q Consensus 909 y~--~L~~~y~~~G~~~eA~~~~~~ 931 (1076)
-. ..+++|+.. .+++|.+++-+
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHhh
Confidence 33 334455543 45667666643
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.61 E-value=6.3 Score=38.36 Aligned_cols=130 Identities=9% Similarity=0.007 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHH
Q 038364 462 LSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQA 541 (1076)
Q Consensus 462 ~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a 541 (1076)
...-..+|..+.+.+.......+++.+...+. .+...+|.++..|++.+ .++.++.++. ..+.+....+++.
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~ 78 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKL 78 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHH
Confidence 33445677888888889999999999888774 47888999999998764 3444455542 1566777778888
Q ss_pred HHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhC-CCHHHHHHHHhhcCCCCHhHHHHHHHHHHh
Q 038364 542 VTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKN-DCLQNAQEVFDNMKNRNIVAWNSLISGYCF 610 (1076)
Q Consensus 542 ~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~-g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~ 610 (1076)
|.+.+.++++..++..+.. +...++.+.+. ++.+.|.+.+.+- .+...|..++..+..
T Consensus 79 c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~l~ 137 (140)
T smart00299 79 CEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKALLD 137 (140)
T ss_pred HHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHHHc
Confidence 8888887777776655421 22334444444 6777777777763 355567766665543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.55 E-value=14 Score=37.79 Aligned_cols=219 Identities=20% Similarity=0.121 Sum_probs=142.4
Q ss_pred CChhHHHHHHHHHhhcCCC-CChhhHHHHHHHHhcCCCchhHHHHHHHHHHc-CCCCChhhHHHHHHHHhhcCCHHHHHH
Q 038364 682 ENYRESLKFFIQMQQEDIK-PNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKN-GFIKDAYVATGLIDMYSKSGNLKSARE 759 (1076)
Q Consensus 682 g~~~eAl~l~~~m~~~gi~-pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~ 759 (1076)
+....+...+......... .....+..........+.+..+...+...... ........+..+...+...++.+.+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3344444444444432211 12344555555556666666666665555442 233445556666777777777888888
Q ss_pred HHHhcCCC--C-hHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 038364 760 VFRKSANK--T-LASWNCMIM-GFAIYGNGKEAILLFHELLETGFQP----DAITFTALLAACKNSGLVEEGWKYFDSMS 831 (1076)
Q Consensus 760 vf~~m~~~--d-~~s~n~li~-~~~~~g~~~~Al~l~~~M~~~g~~P----d~~t~~~ll~a~~~~g~~~eA~~~~~~m~ 831 (1076)
.+...... + ...+..... .+...|+.++|...|++... ..| ....+......+...++.+++...+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 88776642 2 123333333 78889999999999999855 444 22344444444677889999999998887
Q ss_pred hcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC
Q 038364 832 TDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC 904 (1076)
Q Consensus 832 ~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~ 904 (1076)
.. ... ....+..+...+...+++++|...+... ...|+ ...+..+...+...++.+.+...+++..+..|.
T Consensus 195 ~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 KL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 53 222 3567778888889999999999988886 34454 456666666666777899999999999998886
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.33 Score=46.43 Aligned_cols=97 Identities=16% Similarity=0.192 Sum_probs=66.1
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 038364 738 AYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNS 817 (1076)
Q Consensus 738 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~ 817 (1076)
..++.+++-++++.|+++....+.+..-.-|+ .+-...+. --......|+..+..+++.+++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~-------~~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDV-------NGKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC-------CCccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 34556666777777777777766654322111 11111111 112345789999999999999999
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHH
Q 038364 818 GLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLL 850 (1076)
Q Consensus 818 g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l 850 (1076)
|++..|.++.+...+.|+++-+...|..|+.-.
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999999999877777888777643
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=92.16 E-value=6.3 Score=41.27 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=9.8
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 038364 607 GYCFKGLFVNAKKMLNQMEEE 627 (1076)
Q Consensus 607 ~~~~~g~~~~A~~lf~~M~~~ 627 (1076)
.+.+.|++++|.+.|+++...
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~ 34 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDR 34 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 344445555555555555443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.87 E-value=1.9 Score=49.76 Aligned_cols=117 Identities=10% Similarity=0.055 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHh---------cCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcC
Q 038364 819 LVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGK---------AGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHG 886 (1076)
Q Consensus 819 ~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r---------~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g 886 (1076)
..++|..+|.+......+.|+ ...|..+...+.. .....+|.++.++. .. +-|+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 356788899998855567777 4455555443321 23445666666665 33 446777777777778888
Q ss_pred CchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 887 HLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 887 ~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
+++.|...|+++..++|+.+..|...+.+..-.|+.++|.+.+++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999999985443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.84 E-value=28 Score=39.89 Aligned_cols=436 Identities=14% Similarity=0.158 Sum_probs=224.0
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChh---HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 038364 428 ESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLS---SWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLL 504 (1076)
Q Consensus 428 ~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~---s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li 504 (1076)
+.|...|-.||.-|...|..++.++++++|..|-.+ .|..-|++=....+++....+|.+-+..... ...|..-+
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldLW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDLWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhHHHHHH
Confidence 356788999999999999999999999999887554 7999999888888999999999888776543 55566555
Q ss_pred HHHHhcCCh------hhHHHHHHHH-HhcCCCCCcccH----HHHHHHHHhcCchHH------HHHHHHHHHHcCCCCch
Q 038364 505 SGHFTHGSY------QNVLTLLRGM-QSLGFRPNGSSV----SVVLQAVTELRLLKY------GRESHGYILRNGLDYDL 567 (1076)
Q Consensus 505 ~~~~~~g~~------~~Al~l~~~m-~~~gi~pd~~t~----~~ll~a~~~~g~~~~------a~~i~~~~~~~g~~~d~ 567 (1076)
.--.+.+.. ....+.|+-. .-.++.|-...| ...+...-..+.+++ .+.++..++..-
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP----- 191 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTP----- 191 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCc-----
Confidence 544433211 1112222222 234455544332 222222223333332 222222222211
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhhcCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCC----Cccchhh--
Q 038364 568 YVGTSLMDMYVKNDCLQNAQEVFDNMKN-RNIVAWNSLISGYCFKGLFVNAKKMLNQMEE--EEIKP----DLVSWNS-- 638 (1076)
Q Consensus 568 ~v~~aLi~~y~k~g~~~~A~~lf~~m~~-~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~--~g~~p----d~~t~~~-- 638 (1076)
.|++++-++-|+.... -|..|-.-.+. -..--+-.|...++++.. .|++. +..|+|-
T Consensus 192 ------------~~nleklW~dy~~fE~e~N~~TarKfvg--e~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~ 257 (660)
T COG5107 192 ------------MGNLEKLWKDYENFELELNKITARKFVG--ETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAA 257 (660)
T ss_pred ------------cccHHHHHHHHHHHHHHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccc
Confidence 1233333322222111 00000000000 000112234444444432 12221 1112221
Q ss_pred ---------hhhhhhh-----cCCh--hHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCC
Q 038364 639 ---------LVSGYSI-----WGQS--KEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPN 702 (1076)
Q Consensus 639 ---------Li~~y~k-----~g~~--~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd 702 (1076)
.|.--.. .|++ +...-+|++.... +.-....|----.-+...++-+.|+....+-.. ..|.
T Consensus 258 r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~--~sps 334 (660)
T COG5107 258 RTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIE--MSPS 334 (660)
T ss_pred ccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc--CCCc
Confidence 1111000 0111 1111122222211 011222333333334456666677766554322 2232
Q ss_pred hhhHHHHHHHHhcC-CCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhh---------cCCHHHHHHHHHhcCCCChHHH
Q 038364 703 STTMSSLLQTCGGL-GLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSK---------SGNLKSAREVFRKSANKTLASW 772 (1076)
Q Consensus 703 ~~t~~~lL~a~~~~-g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k---------~G~~~~A~~vf~~m~~~d~~s~ 772 (1076)
++..++-|-.. .+-+.....++.+.+ .|..-|.+ -|+.+...++.-.-.++=...|
T Consensus 335 ---L~~~lse~yel~nd~e~v~~~fdk~~q-----------~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~ 400 (660)
T COG5107 335 ---LTMFLSEYYELVNDEEAVYGCFDKCTQ-----------DLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVF 400 (660)
T ss_pred ---hheeHHHHHhhcccHHHHhhhHHHHHH-----------HHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHH
Confidence 33333333222 222222232332221 11111111 1223222332222222344577
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccH-HHHHHHH
Q 038364 773 NCMIMGFAIYGNGKEAILLFHELLETG-FQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHY-SCMVDLL 850 (1076)
Q Consensus 773 n~li~~~~~~g~~~~Al~l~~~M~~~g-~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y-~~li~~l 850 (1076)
...++.-.+..-.+.|..+|-+..+.| +.++...+++.+.-++ .|+..-|.++|+.=...+ ||...| .-.++-+
T Consensus 401 C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~kyl~fL 476 (660)
T COG5107 401 CVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHHHHHH
Confidence 888888888878888888999998888 5667777777776544 477778888887655432 444433 4566777
Q ss_pred HhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC
Q 038364 851 GKAGYLDEAWDFIRTM--PFKPD--ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 851 ~r~G~l~eA~~l~~~m--~~~pd--~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
.+-++-+.|..+|++. .+..+ ..+|..++.--..-|+...+..+-+++.++-|+.
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 8888888899888865 13333 4588888888888899888888888888888875
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.80 E-value=28 Score=39.86 Aligned_cols=80 Identities=11% Similarity=0.201 Sum_probs=55.3
Q ss_pred CChHHHHHHHHHHhcCCChHHHHHHHhhcCCCCC---hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038364 327 FDVHLKCALMNFYGKCRDVESANKLFSEVSDLED---DLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKML 403 (1076)
Q Consensus 327 ~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~~~d---~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll 403 (1076)
.|...|-.||.-|...|.++.-++++++|.. +- ..+|..-|++-....++.....+|.+-...... ...|..-|
T Consensus 40 tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~-pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldLW~lYl 116 (660)
T COG5107 40 TNILSYFQLIQYLETQESMDAEREMYEQLSS-PFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDLWMLYL 116 (660)
T ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC-CCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhHHHHHH
Confidence 4667788888888888888888888888876 52 346888888777777888888888777665433 33344444
Q ss_pred HHHHcc
Q 038364 404 QACAKV 409 (1076)
Q Consensus 404 ~a~~~~ 409 (1076)
.--.+.
T Consensus 117 ~YIRr~ 122 (660)
T COG5107 117 EYIRRV 122 (660)
T ss_pred HHHHhh
Confidence 433333
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.62 Score=53.62 Aligned_cols=95 Identities=14% Similarity=0.061 Sum_probs=60.3
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPDA----TIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMN 914 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd~----~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~ 914 (1076)
...++.+..+|.+.|++++|...|++. .+.|+. ..|..+..+|...|+.++|+..+++++++.+. .|..+.+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~~ 151 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTILN 151 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHHh
Confidence 456777777888888888888888774 566664 35888888888888888888888888876321 1211111
Q ss_pred --HHHHcCChHHHHHHHHHHHhCCC
Q 038364 915 --LLAMSNRWEDVERLRHSMDEVGV 937 (1076)
Q Consensus 915 --~y~~~G~~~eA~~~~~~m~~~g~ 937 (1076)
-+......++..++++.++.-|.
T Consensus 152 DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 152 DPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred CcchhhhcccHHHHHHHHHHHHhCC
Confidence 11222334456666666655554
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.75 E-value=3.1 Score=47.04 Aligned_cols=93 Identities=15% Similarity=0.093 Sum_probs=73.3
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHc
Q 038364 842 HYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMS 919 (1076)
Q Consensus 842 ~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~ 919 (1076)
.+..+.-.|.+.+++.+|++..++. .. ++|.-..--=..||...|+++.|+..|+++++++|+|-.+-.-|+.+-.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 4555666778888888888887775 33 345556666678899999999999999999999999988888888888887
Q ss_pred CChHHH-HHHHHHHHh
Q 038364 920 NRWEDV-ERLRHSMDE 934 (1076)
Q Consensus 920 G~~~eA-~~~~~~m~~ 934 (1076)
.+..+. .+++..|-.
T Consensus 339 ~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 776555 778888843
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.55 Score=46.23 Aligned_cols=69 Identities=14% Similarity=0.218 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHH-----hcCCCCCcc
Q 038364 464 SWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQ-----SLGFRPNGS 533 (1076)
Q Consensus 464 s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~-----~~gi~pd~~ 533 (1076)
....++..+...|++++|.++.+++....+- |...|..+|.+|...|+..+|++.|+++. +.|+.|+..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 3445556666777777777777777766555 67777777777777777777777777664 346666643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=91.52 E-value=5.4 Score=38.85 Aligned_cols=82 Identities=13% Similarity=0.114 Sum_probs=44.0
Q ss_pred hhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcC
Q 038364 637 NSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGL 716 (1076)
Q Consensus 637 ~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~ 716 (1076)
..++..+...+.......+++.+...+ ..+....|.+|..|++.+ .++.++.++. ..+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 445555655666666666666666554 245566666777666543 3344444442 12334444556666555
Q ss_pred CCchhHHHHH
Q 038364 717 GLLQNGKEIH 726 (1076)
Q Consensus 717 g~~~~a~~i~ 726 (1076)
+.++++..++
T Consensus 83 ~l~~~~~~l~ 92 (140)
T smart00299 83 KLYEEAVELY 92 (140)
T ss_pred CcHHHHHHHH
Confidence 5544444444
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.32 E-value=44 Score=41.09 Aligned_cols=145 Identities=13% Similarity=0.210 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 038364 431 LSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTH 510 (1076)
Q Consensus 431 ~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~ 510 (1076)
..++..+|+.|.-.|++++|-.+.-.|...+..-|---+.-++..++.... +.-++....+.+...|..++..+..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I---a~~lPt~~~rL~p~vYemvLve~L~- 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI---APYLPTGPPRLKPLVYEMVLVEFLA- 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh---hccCCCCCcccCchHHHHHHHHHHH-
Confidence 346677777777777777777777777777777777777666666655433 2233333333456667776666665
Q ss_pred CChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHH
Q 038364 511 GSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVF 590 (1076)
Q Consensus 511 g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf 590 (1076)
.+...-.++.++.. ++.+.-..++++. ..++.+. -+ +..+...|...|...++++.|..++
T Consensus 468 ~~~~~F~e~i~~Wp-----~~Lys~l~iisa~------------~~q~~q~-Se-~~~L~e~La~LYl~d~~Y~~Al~~y 528 (846)
T KOG2066|consen 468 SDVKGFLELIKEWP-----GHLYSVLTIISAT------------EPQIKQN-SE-STALLEVLAHLYLYDNKYEKALPIY 528 (846)
T ss_pred HHHHHHHHHHHhCC-----hhhhhhhHHHhhc------------chHHHhh-cc-chhHHHHHHHHHHHccChHHHHHHH
Confidence 22222222222211 1111111111110 1111111 01 1223334888899999999999888
Q ss_pred hhcCCCCH
Q 038364 591 DNMKNRNI 598 (1076)
Q Consensus 591 ~~m~~~d~ 598 (1076)
-...++++
T Consensus 529 lklk~~~v 536 (846)
T KOG2066|consen 529 LKLQDKDV 536 (846)
T ss_pred HhccChHH
Confidence 87776544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.04 E-value=28 Score=38.39 Aligned_cols=19 Identities=5% Similarity=-0.319 Sum_probs=12.9
Q ss_pred HHHHHcCCchHHHHHHHHH
Q 038364 880 GSCRIHGHLEYAEIASRRL 898 (1076)
Q Consensus 880 ~a~~~~g~~e~A~~~~~~l 898 (1076)
..+.+.++++.|...++-.
T Consensus 254 ~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHhhcCHHHHHHHHHHH
Confidence 3456677788887777754
|
It is also involved in sporulation []. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.69 E-value=1.5 Score=47.16 Aligned_cols=90 Identities=22% Similarity=0.228 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC----C---CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC---chhHHHH
Q 038364 843 YSCMVDLLGKAGYLDEAWDFIRTM----P---FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN---SANYNLM 912 (1076)
Q Consensus 843 y~~li~~l~r~G~l~eA~~l~~~m----~---~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~---~~~y~~L 912 (1076)
|+.-++. .+.|++.+|..-|... | ..|+..-| |..++...|+++.|...|..+.+-.|++ ++.+.-|
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4444433 3556666666655553 1 34555555 6677777777777777777777655544 5668888
Q ss_pred HHHHHHcCChHHHHHHHHHHHhC
Q 038364 913 MNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 913 ~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
+.+..+.|+-++|..++++..++
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 88888888888888888887544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.45 E-value=2.2 Score=41.43 Aligned_cols=59 Identities=22% Similarity=0.235 Sum_probs=39.9
Q ss_pred HHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchh
Q 038364 850 LGKAGYLDEAWDFIRTM----PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSAN 908 (1076)
Q Consensus 850 l~r~G~l~eA~~l~~~m----~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~ 908 (1076)
..+.|++++|.+.|+.+ |..| ....-..|+.++.+.+++++|...+++.+++.|.++..
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 34566667776666665 2222 22345567778888888888888888888888877643
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.39 E-value=0.33 Score=34.28 Aligned_cols=32 Identities=22% Similarity=0.132 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC
Q 038364 873 TIWGALLGSCRIHGHLEYAEIASRRLFKLEPC 904 (1076)
Q Consensus 873 ~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~ 904 (1076)
.+|..+..++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46778888888888888888888888888886
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.13 E-value=15 Score=42.74 Aligned_cols=96 Identities=16% Similarity=0.217 Sum_probs=49.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHH--HHHHHHHHHHHc
Q 038364 810 LLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMP-F-KPDAT--IWGALLGSCRIH 885 (1076)
Q Consensus 810 ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~-~-~pd~~--~~~~Ll~a~~~~ 885 (1076)
+...+.+.|+.+||.+.|.+|.+++...........|++.|...++++|+..++.+-. + -|... .|++.+--.+.-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 3334455666666666666665543211122234456666666666666666666653 1 12222 344444333333
Q ss_pred CCc---------------hHHHHHHHHHhcCCCCC
Q 038364 886 GHL---------------EYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 886 g~~---------------e~A~~~~~~l~~l~P~~ 905 (1076)
++. ..|.++..++.+.+|.-
T Consensus 345 ~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 345 GDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred ccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 321 23557777877777764
|
The molecular function of this protein is uncertain. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.06 E-value=56 Score=40.23 Aligned_cols=47 Identities=15% Similarity=0.265 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChH
Q 038364 569 VGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFV 615 (1076)
Q Consensus 569 v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~ 615 (1076)
++..+|+-|.-.|++++|-...-.|...+..-|---+..++..++..
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 45556666666666666666666666666666655555555555443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.99 E-value=6.9 Score=42.53 Aligned_cols=119 Identities=11% Similarity=0.040 Sum_probs=79.5
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH---HHHHHHcCCchH
Q 038364 814 CKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGAL---LGSCRIHGHLEY 890 (1076)
Q Consensus 814 ~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~~~L---l~a~~~~g~~e~ 890 (1076)
....|+..++..+|+..... ..-+...-..|+..|...|+.++|..++..+|..-...-|..+ +....+..+..+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 45567777788877777653 1222455667788888888888888888888754444444331 222333333333
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 891 AEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 891 A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
.. .+++-+.-+|+|...-..|+..|-..|+.++|.+.+-.+..+
T Consensus 222 ~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 222 IQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22 234445678999999999999999999999999887777544
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=89.92 E-value=54 Score=42.33 Aligned_cols=84 Identities=13% Similarity=0.143 Sum_probs=47.7
Q ss_pred HHHhcCCChhHHHHHHHHHhhcCCCCChhh--HHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCC
Q 038364 676 SGSLQNENYRESLKFFIQMQQEDIKPNSTT--MSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGN 753 (1076)
Q Consensus 676 ~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t--~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~ 753 (1076)
.+|..+|++++|+.+-.+|.. .-|... -..|.+-+...++.-+|-++....... ..--+..|++.-.
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~ 1041 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKE 1041 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhH
Confidence 344455777777777777632 122222 134555555566655555554433221 2335567888888
Q ss_pred HHHHHHHHHhcCCCChH
Q 038364 754 LKSAREVFRKSANKTLA 770 (1076)
Q Consensus 754 ~~~A~~vf~~m~~~d~~ 770 (1076)
|++|.++-......|.+
T Consensus 1042 ~~eAlrva~~~~~~d~i 1058 (1265)
T KOG1920|consen 1042 WEEALRVASKAKRDDII 1058 (1265)
T ss_pred HHHHHHHHHhcccchHH
Confidence 88888887665544443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.83 E-value=0.53 Score=33.07 Aligned_cols=33 Identities=24% Similarity=0.232 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC
Q 038364 873 TIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 873 ~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
..|..+...+...|++++|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677777888888888888888888888764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.61 E-value=3.8 Score=48.29 Aligned_cols=106 Identities=18% Similarity=0.268 Sum_probs=65.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 038364 807 FTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHG 886 (1076)
Q Consensus 807 ~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g 886 (1076)
...++.-+-+.|..+.|.++-..-. .-.++..+.|+++.|.++.++. ++...|..|......+|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L~~A~~~a~~~---~~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNLDIALEIAKEL---DDPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-HHHHHHHCCCC---STHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCHHHHHHHHHhc---CcHHHHHHHHHHHHHcC
Confidence 4445555666677777766533322 2245666777777777766654 36667777777777777
Q ss_pred CchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 887 HLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 887 ~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
+++.|++++++.- -+..|.-+|...|+-+.-.++-+...++|
T Consensus 362 ~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 362 NIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp BHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 7777777777652 35666777777777666666655555444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.54 E-value=14 Score=41.77 Aligned_cols=50 Identities=14% Similarity=0.053 Sum_probs=25.3
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCCcc----cHHHHHHHHHhcCchHHHHHHHHH
Q 038364 507 HFTHGSYQNVLTLLRGMQSLGFRPNGS----SVSVVLQAVTELRLLKYGRESHGY 557 (1076)
Q Consensus 507 ~~~~g~~~~Al~l~~~m~~~gi~pd~~----t~~~ll~a~~~~g~~~~a~~i~~~ 557 (1076)
+++.|+...-+.+|+...+.|- -|-. .|+.+-+++.-++++++|.+.|..
T Consensus 27 Lck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~h 80 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTH 80 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhh
Confidence 3444555555555555544442 1222 233444555666677777776653
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=89.14 E-value=9.1 Score=42.47 Aligned_cols=115 Identities=11% Similarity=0.036 Sum_probs=55.1
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCC--CCC--cccHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHH-----HH
Q 038364 814 CKNSGLVEEGWKYFDSMSTDYNI--IPT--IEHYSCMVDLLGKAGYLDEAWDFIRTM-------PFKPDATIW-----GA 877 (1076)
Q Consensus 814 ~~~~g~~~eA~~~~~~m~~~~g~--~p~--~~~y~~li~~l~r~G~l~eA~~l~~~m-------~~~pd~~~~-----~~ 877 (1076)
..-.+.++++.+.|+...+--.- .|. ..+|..|...|++-.++++|.-+..+. .+..-..-| ..
T Consensus 132 hlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyh 211 (518)
T KOG1941|consen 132 HLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYH 211 (518)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHH
Confidence 33344456666666655431111 111 235666666666666666654443332 221111122 22
Q ss_pred HHHHHHHcCCchHHHHHHHHHhcCC--CC----CchhHHHHHHHHHHcCChHHHHHH
Q 038364 878 LLGSCRIHGHLEYAEIASRRLFKLE--PC----NSANYNLMMNLLAMSNRWEDVERL 928 (1076)
Q Consensus 878 Ll~a~~~~g~~e~A~~~~~~l~~l~--P~----~~~~y~~L~~~y~~~G~~~eA~~~ 928 (1076)
+.-+++..|..-.|.+..+++.++. .. ......+++++|...|+.|.|..-
T Consensus 212 maValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~r 268 (518)
T KOG1941|consen 212 MAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRR 268 (518)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHH
Confidence 3345666666666666666655431 11 122344566666666665544433
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.82 E-value=20 Score=37.87 Aligned_cols=199 Identities=10% Similarity=0.060 Sum_probs=103.3
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCCh--HHHHHHHHHHHHcC
Q 038364 706 MSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTL--ASWNCMIMGFAIYG 783 (1076)
Q Consensus 706 ~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~--~s~n~li~~~~~~g 783 (1076)
|.....++....++++++..+....+. .+.+...+. ....++.|.-+.++|.+-+. ..|+--+..|..+|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 444445666677777777755555431 222221111 11223334444444443221 23455667788888
Q ss_pred CHHHHHHHHHHHHH--CCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHH
Q 038364 784 NGKEAILLFHELLE--TGFQPDAI--TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEA 859 (1076)
Q Consensus 784 ~~~~Al~l~~~M~~--~g~~Pd~~--t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA 859 (1076)
..+-|-..+++.-+ ++++||.. .|.--+......++...| .+.|.....+|.|-.+++||
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma----------------~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA----------------FELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH----------------HHHHHHhhhHhhhhHHhhHH
Confidence 87776655555432 24556553 122222222222222222 23444556677788888888
Q ss_pred HHHHHhCC-------CCCCH-HHHHHHHHHHHHcCCchHHHHHHHHHhcC----CCCCchhHHHHHHHHHHcCChHHHHH
Q 038364 860 WDFIRTMP-------FKPDA-TIWGALLGSCRIHGHLEYAEIASRRLFKL----EPCNSANYNLMMNLLAMSNRWEDVER 927 (1076)
Q Consensus 860 ~~l~~~m~-------~~pd~-~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l----~P~~~~~y~~L~~~y~~~G~~~eA~~ 927 (1076)
-..|.+-. .-|+. ..+.+.+-.+....|+..|++.++.-.++ .|++..+...|...| ..|+.+++.+
T Consensus 170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 77666542 12222 13444455556667888888888876554 455555555566655 4566676665
Q ss_pred HH
Q 038364 928 LR 929 (1076)
Q Consensus 928 ~~ 929 (1076)
+.
T Consensus 249 vl 250 (308)
T KOG1585|consen 249 VL 250 (308)
T ss_pred HH
Confidence 54
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.81 E-value=71 Score=39.70 Aligned_cols=174 Identities=13% Similarity=0.062 Sum_probs=103.5
Q ss_pred HHHHHHhcCCChHHHHHHHhhcCCCCChhhHHHHHH----HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 038364 334 ALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIM----VKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKV 409 (1076)
Q Consensus 334 ~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~----~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 409 (1076)
.-+++..+...++.|..+-..-.. |...-..+.. -+-+.|++++|..-|-+-... +.| ..+++-+-..
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLda 410 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDA 410 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCH
Confidence 345566666667777766654432 2222222222 345689999998888765421 122 2334444444
Q ss_pred CCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCCh-hHHHHHHHHHHhCCChHHHHHHHHHH
Q 038364 410 GAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNL-SSWNSMISSYTGLGYVDVAWSLFNKM 488 (1076)
Q Consensus 410 g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~-~s~n~lI~~~~~~g~~~~A~~lf~~M 488 (1076)
.....--..++.+.+.|+... .--+.|++.|.|.++.+.-.+..+....-.. +-....+..+-+.+-.++|..+-.+.
T Consensus 411 q~IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 444555566777788887643 3356799999999999988887777662211 13455666777777777776665544
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 038364 489 NSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQ 524 (1076)
Q Consensus 489 ~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~ 524 (1076)
.. .... +--.+-..+++++|++.+..|.
T Consensus 490 ~~-----he~v---l~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 490 KK-----HEWV---LDILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred cc-----CHHH---HHHHHHHhcCHHHHHHHHhcCC
Confidence 32 1222 2222345678888888888774
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=88.73 E-value=14 Score=44.07 Aligned_cols=114 Identities=20% Similarity=0.099 Sum_probs=73.6
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCcccHHH-HHHHHHhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHHcCCch
Q 038364 817 SGLVEEGWKYFDSMSTDYNIIPTIEHYSC-MVDLLGKAGYLDEAWDFIRTMPF------KPDATIWGALLGSCRIHGHLE 889 (1076)
Q Consensus 817 ~g~~~eA~~~~~~m~~~~g~~p~~~~y~~-li~~l~r~G~l~eA~~l~~~m~~------~pd~~~~~~Ll~a~~~~g~~e 889 (1076)
....+++.++++.+.++| |+...|.. -..++...|++++|.+.|++... +-....+--+...+...++++
T Consensus 246 ~~~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 455677777777776653 55444432 23556667788888887776421 111233344555667788899
Q ss_pred HHHHHHHHHhcCCCCCchh-HHHHHHHHHHcCCh-------HHHHHHHHHHH
Q 038364 890 YAEIASRRLFKLEPCNSAN-YNLMMNLLAMSNRW-------EDVERLRHSMD 933 (1076)
Q Consensus 890 ~A~~~~~~l~~l~P~~~~~-y~~L~~~y~~~G~~-------~eA~~~~~~m~ 933 (1076)
+|...+.++.+...-.... ++..+-.|...|+. ++|.+++++..
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 9999998888866554444 34556677778888 78888877763
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.60 E-value=19 Score=36.26 Aligned_cols=123 Identities=15% Similarity=0.163 Sum_probs=69.0
Q ss_pred HHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHc
Q 038364 653 LVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKN 732 (1076)
Q Consensus 653 ~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~ 732 (1076)
.++++.+.+.++.|+...|..+|+.+.+.|++.....+ .+.++-+|.......+-.... ....+.++--.|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 35566666778888888999999999999886654444 445567776665555433322 223334433333322
Q ss_pred -CCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHH
Q 038364 733 -GFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGK 786 (1076)
Q Consensus 733 -g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~ 786 (1076)
+ ..+..+++.+...|++-+|.+..+.....+.+.-..++.+-.+.++..
T Consensus 88 L~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~ 137 (167)
T PF07035_consen 88 LG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQ 137 (167)
T ss_pred hh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHH
Confidence 1 123445566666677777766666544333333334444444444433
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=88.09 E-value=46 Score=38.08 Aligned_cols=26 Identities=12% Similarity=0.035 Sum_probs=20.0
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhC
Q 038364 841 EHYSCMVDLLGKAGYLDEAWDFIRTM 866 (1076)
Q Consensus 841 ~~y~~li~~l~r~G~l~eA~~l~~~m 866 (1076)
..+..+..+..-.|+.++|.+..++|
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~ 331 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQAAEKA 331 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34556777777888888888888887
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.06 E-value=25 Score=35.34 Aligned_cols=124 Identities=9% Similarity=0.091 Sum_probs=68.9
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHc
Q 038364 482 WSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRN 561 (1076)
Q Consensus 482 ~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 561 (1076)
.+..+.+.+.++.|+...|..+|..+.+.|++. .+..+...++-+|+......+-.... ....+.++--.|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 456666777889999999999999999999754 45566667777887766655533322 122222222222221
Q ss_pred -CCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHH
Q 038364 562 -GLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVN 616 (1076)
Q Consensus 562 -g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~ 616 (1076)
+. .+..+++.+...|++-+|.+..+....-+...-..++.+-.+.++...
T Consensus 88 L~~-----~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~l 138 (167)
T PF07035_consen 88 LGT-----AYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQL 138 (167)
T ss_pred hhh-----hHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHH
Confidence 11 133444555556666666665555433333333444444444444333
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.02 E-value=6.4 Score=46.38 Aligned_cols=131 Identities=14% Similarity=0.094 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHh
Q 038364 600 AWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSL 679 (1076)
Q Consensus 600 ~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~ 679 (1076)
-.+.++.-+-+.|..+.|+++-.+-. .-.+...++|+++.|.++-++. ++...|..|.+...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 35666677777777777777654432 1234556788888888776554 36678888888888
Q ss_pred cCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHH
Q 038364 680 QNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSARE 759 (1076)
Q Consensus 680 ~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~ 759 (1076)
+.|+++-|.+.|.+..+ |..|+--+...|+.+.-.++.....+.|- +|.....+.-.|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHH
Confidence 88998888888888743 45555566667777776666666655432 3333344444566666555
Q ss_pred HHHh
Q 038364 760 VFRK 763 (1076)
Q Consensus 760 vf~~ 763 (1076)
++.+
T Consensus 424 lL~~ 427 (443)
T PF04053_consen 424 LLIE 427 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.86 E-value=39 Score=36.27 Aligned_cols=167 Identities=13% Similarity=0.092 Sum_probs=96.2
Q ss_pred hhcCCHHHHHHHHHhcCCCCh---H---HHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCH--HHHHHHHHHHHhcC-
Q 038364 749 SKSGNLKSAREVFRKSANKTL---A---SWNCMIMGFAIYGNGKEAILLFHELLE-TGFQPDA--ITFTALLAACKNSG- 818 (1076)
Q Consensus 749 ~k~G~~~~A~~vf~~m~~~d~---~---s~n~li~~~~~~g~~~~Al~l~~~M~~-~g~~Pd~--~t~~~ll~a~~~~g- 818 (1076)
.+.|++++|.+.|+.+...-+ . +--.++-++-+.++.++|+..+++... .+-.||. +.|...++-+....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 456888888888888775322 1 223455677778888888888888765 2333443 23433333222111
Q ss_pred ---CH---HHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCCchH
Q 038364 819 ---LV---EEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIW--GALLGSCRIHGHLEY 890 (1076)
Q Consensus 819 ---~~---~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~--~~Ll~a~~~~g~~e~ 890 (1076)
+. .+|..-|+....++ |+.. -..+|..-+.... |.... .++..-|.+.|.+..
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKLN---DALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChHH
Confidence 11 22333333333332 2211 1111111111110 11111 123455788999999
Q ss_pred HHHHHHHHhcCCCCCc---hhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 891 AEIASRRLFKLEPCNS---ANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 891 A~~~~~~l~~l~P~~~---~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
|..-++.+++--|+.+ +.+..|.++|.+.|..++|.+..+-+..
T Consensus 186 A~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 186 AINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 9999999998766544 4577889999999999999998877743
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.54 E-value=72 Score=38.25 Aligned_cols=180 Identities=14% Similarity=0.135 Sum_probs=122.6
Q ss_pred ChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038364 737 DAYVATGLIDMYSKSGNLKSAREVFRKSANKT---LASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAA 813 (1076)
Q Consensus 737 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d---~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a 813 (1076)
+...|..-++.-.+.|+.+.+.-.|++...+- ..-|--.+.-....|+.+-|-.++....+--++-...+ .|+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i--~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPII--HLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHH--HHHHH
Confidence 45677778888888999999999998876542 23454444444444888888777766665433222222 22222
Q ss_pred --HHhcCCHHHHHHHHHHhhhcCCCCCCc-ccHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----H
Q 038364 814 --CKNSGLVEEGWKYFDSMSTDYNIIPTI-EHYSCMVDLLGKAGYLDEAW---DFIRTM-PFKPDATIWGALLG-----S 881 (1076)
Q Consensus 814 --~~~~g~~~eA~~~~~~m~~~~g~~p~~-~~y~~li~~l~r~G~l~eA~---~l~~~m-~~~pd~~~~~~Ll~-----a 881 (1076)
+-..|+.+.|..+++.+.+++ |+. +.-.--+.+..|.|..+.+. +++... +.+-+..+...+.- -
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 667889999999999998864 653 34445567788999999988 555544 22223223322221 2
Q ss_pred HHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCC
Q 038364 882 CRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNR 921 (1076)
Q Consensus 882 ~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~ 921 (1076)
+...++.+.|..++.++.+..|++...|..++++....+-
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 4567899999999999999999999899999998877663
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.43 E-value=86 Score=39.05 Aligned_cols=202 Identities=9% Similarity=0.004 Sum_probs=116.6
Q ss_pred HHhCCChHHHHHHHHhcC-CCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 038364 441 YSRNNKLELATRVFDSMK-DHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTL 519 (1076)
Q Consensus 441 y~k~g~~~~A~~lf~~m~-~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l 519 (1076)
+.+.|+.++|..-+-+-. .-+. ..+|.-|....+..+-..+++.+.+.|+. +...-+.|+.+|.+.++.++..++
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ef 453 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEF 453 (933)
T ss_pred HHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHH
Confidence 345577777766554322 1111 23456666666677777788888888887 777778899999999999988877
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCH-
Q 038364 520 LRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNI- 598 (1076)
Q Consensus 520 ~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~- 598 (1076)
.+.-. .|.. .+-+-..+..|.+.+-+++|.-+-....+ +..+... .+-..+++++|.+.+..++-+..
T Consensus 454 I~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~slp~~e~l 522 (933)
T KOG2114|consen 454 ISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSLPISELL 522 (933)
T ss_pred HhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcCCHHHHH
Confidence 76654 3321 22356677777777777777655433222 2333333 34567889999999999985322
Q ss_pred ---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhh-----hhhhcCChhHHHHHHHHhHh
Q 038364 599 ---VAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVS-----GYSIWGQSKEALVIIHHMKN 661 (1076)
Q Consensus 599 ---~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~-----~y~k~g~~~~A~~lf~~m~~ 661 (1076)
..|...+ -...+++-..++-+.....-+++..++-..+. .+.-.+++..-...++.|.+
T Consensus 523 ~~l~kyGk~L----l~h~P~~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E 589 (933)
T KOG2114|consen 523 RTLNKYGKIL----LEHDPEETMKILIELITELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSE 589 (933)
T ss_pred HHHHHHHHHH----HhhChHHHHHHHHHHHhhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHh
Confidence 2222211 12345555555555544432333322221111 12223455555555554544
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.90 E-value=2.1 Score=43.52 Aligned_cols=89 Identities=13% Similarity=0.071 Sum_probs=70.7
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcC
Q 038364 848 DLLGKAGYLDEAWDFIRTM-PFKP------DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSN 920 (1076)
Q Consensus 848 ~~l~r~G~l~eA~~l~~~m-~~~p------d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G 920 (1076)
+-+.+.|++++|..-|... ..-| ..+.|..-..+..+.+..+.|+....+++++.|.+..+..-.+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 4566788888888777664 2222 23344555566778899999999999999999998888888899999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 038364 921 RWEDVERLRHSMDEVG 936 (1076)
Q Consensus 921 ~~~eA~~~~~~m~~~g 936 (1076)
++++|++-++++.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999997755
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.27 E-value=11 Score=36.80 Aligned_cols=18 Identities=17% Similarity=0.021 Sum_probs=12.8
Q ss_pred chHHHHHHHHHhcCCCCC
Q 038364 888 LEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 888 ~e~A~~~~~~l~~l~P~~ 905 (1076)
...|...|++++..-|++
T Consensus 115 ~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHHHHHHHHHHHHCcCC
Confidence 556777777777777765
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.10 E-value=13 Score=40.60 Aligned_cols=109 Identities=12% Similarity=0.086 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHhcC---CCChhHHHHHHHHHHhCC---ChHHHHHHHHHHHhCCCCCChhhHHH
Q 038364 429 SNLSVCNCLISMYSRNNKLELATRVFDSMK---DHNLSSWNSMISSYTGLG---YVDVAWSLFNKMNSSRIQPDIITWNC 502 (1076)
Q Consensus 429 ~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~---~~d~~s~n~lI~~~~~~g---~~~~A~~lf~~M~~~g~~pd~~ty~~ 502 (1076)
.|..-|-.|-..|.+.|+.+.|...|.+.. .+|...+..+-.++.... .-.++.++|+++...... |+.+...
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 355566677777777777777777776542 344555544444443322 345677888888776655 6677777
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHH
Q 038364 503 LLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQ 540 (1076)
Q Consensus 503 Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~ 540 (1076)
|...+...|++.+|...|+.|.+.. |.......++.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 7777888888888888888887765 55555555544
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.05 E-value=0.14 Score=50.24 Aligned_cols=128 Identities=15% Similarity=0.193 Sum_probs=81.0
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHH
Q 038364 538 VLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNA 617 (1076)
Q Consensus 538 ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A 617 (1076)
++..+.+.+.......+++.+.+.+...+..+.+.|+..|++.+..+...+.++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4455555666666777777777766667788899999999999888888888874333 3345667777778888888
Q ss_pred HHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCC
Q 038364 618 KKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNEN 683 (1076)
Q Consensus 618 ~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~ 683 (1076)
.-++.++.... ..+..+.+.++++.|.+.+.+. ++...|..+++.+...+.
T Consensus 90 ~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~~------~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 90 VYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKKV------DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGGC------SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHhc------CcHHHHHHHHHHHHhcCc
Confidence 87777654221 1112233445555555444333 356677777776665544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.92 E-value=54 Score=35.21 Aligned_cols=56 Identities=27% Similarity=0.278 Sum_probs=37.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-H---HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 038364 775 MIMGFAIYGNGKEAILLFHELLETGFQPDA-I---TFTALLAACKNSGLVEEGWKYFDSMST 832 (1076)
Q Consensus 775 li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~---t~~~ll~a~~~~g~~~eA~~~~~~m~~ 832 (1076)
+..-|.+.|.+..|..-+++|++. -|+. . .+-.+..+|-+.|..++|.+.-.-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 346677888888888888888875 3332 2 344556677778888877776655543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=85.88 E-value=38 Score=38.42 Aligned_cols=67 Identities=21% Similarity=0.214 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC----CchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 870 PDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC----NSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 870 pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~----~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
....+|..+...++++|+++.|..++.++...++. .+.....-+.++...|+-++|.+.++...+..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34558999999999999999999999999886522 45677788999999999999999988886633
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=85.81 E-value=34 Score=40.93 Aligned_cols=156 Identities=17% Similarity=0.097 Sum_probs=76.3
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHhhcC-CCCCh-----hhHHHHHHHHhc----CCCchhHHHHHHHHHHcCCCCChhhH
Q 038364 672 TSLISGSLQNENYRESLKFFIQMQQED-IKPNS-----TTMSSLLQTCGG----LGLLQNGKEIHCLCLKNGFIKDAYVA 741 (1076)
Q Consensus 672 ~~LI~~~~~~g~~~eAl~l~~~m~~~g-i~pd~-----~t~~~lL~a~~~----~g~~~~a~~i~~~~~~~g~~~d~~~~ 741 (1076)
..++....=.|+-+.+++++.+..+.+ +.-.. .+|..++..+.. ..+.+.+.+++..+.+. -|+...+
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 344555555666666666666554321 11111 123333332222 33455666666666653 2443333
Q ss_pred -HHHHHHHhhcCCHHHHHHHHHhcCCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038364 742 -TGLIDMYSKSGNLKSAREVFRKSANK-------TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAA 813 (1076)
Q Consensus 742 -~~Li~~y~k~G~~~~A~~vf~~m~~~-------d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a 813 (1076)
-.-..++...|++++|.+.|++.... ....+--+.-.+....++++|.+.|.++.+.. .....+|..+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 23445666677777777777754421 11122233444566667777777777776632 2223333333333
Q ss_pred -HHhcCCH-------HHHHHHHHHh
Q 038364 814 -CKNSGLV-------EEGWKYFDSM 830 (1076)
Q Consensus 814 -~~~~g~~-------~eA~~~~~~m 830 (1076)
+...|+. ++|.++|.+.
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHH
Confidence 2334544 5555555444
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.51 E-value=44 Score=36.59 Aligned_cols=154 Identities=17% Similarity=0.109 Sum_probs=101.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcC
Q 038364 776 IMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAG 854 (1076)
Q Consensus 776 i~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G 854 (1076)
.......|+..+|..+|+..... .|+. ..-..+..++...|++++|..++..+..+. -.........-+..+.++.
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHh
Confidence 34566788888888888888873 3333 345566777888999999999988775431 0111111234466777777
Q ss_pred CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcC--CCCCchhHHHHHHHHHHcCChH-HHHHHHH
Q 038364 855 YLDEAWDFIRTMPFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKL--EPCNSANYNLMMNLLAMSNRWE-DVERLRH 930 (1076)
Q Consensus 855 ~l~eA~~l~~~m~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l--~P~~~~~y~~L~~~y~~~G~~~-eA~~~~~ 930 (1076)
...+...+..+.--.| |...-..|...+...|+.+.|...+-.++.. .-++...-..|..++...|.-+ .+.+.|+
T Consensus 218 ~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 218 ATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred cCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 6666666666664455 5556666777788889998888777666654 3445677778888887777543 4455555
Q ss_pred HH
Q 038364 931 SM 932 (1076)
Q Consensus 931 ~m 932 (1076)
+|
T Consensus 298 kL 299 (304)
T COG3118 298 KL 299 (304)
T ss_pred HH
Confidence 55
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.11 E-value=6.6 Score=43.05 Aligned_cols=159 Identities=13% Similarity=0.006 Sum_probs=109.8
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHH----HHHHHhcCCH
Q 038364 781 IYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCM----VDLLGKAGYL 856 (1076)
Q Consensus 781 ~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~l----i~~l~r~G~l 856 (1076)
-.|+..+|-..++++++. .+.|-..+.-.=.+|...|+.+.-+..++++.. ...|+...|.-+ .-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 368888888888888874 566777788778889999999888888888764 346666555433 3345588899
Q ss_pred HHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC----CchhHHHHHHHHHHcCChHHHHHHHH
Q 038364 857 DEAWDFIRTM-PFK-PDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC----NSANYNLMMNLLAMSNRWEDVERLRH 930 (1076)
Q Consensus 857 ~eA~~l~~~m-~~~-pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~----~~~~y~~L~~~y~~~G~~~eA~~~~~ 930 (1076)
++|++.-++. .+. -|...-.++.......|+.++|.+..++--..=.+ -...|...+-.|...+.++.|+++++
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999888876 333 35555566667777888888888776554221111 12346666667777788889999888
Q ss_pred HHHhCCCccCcc
Q 038364 931 SMDEVGVKSVLV 942 (1076)
Q Consensus 931 ~m~~~g~~~~~~ 942 (1076)
.=.-..+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 755444555544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.98 E-value=18 Score=39.80 Aligned_cols=178 Identities=15% Similarity=0.121 Sum_probs=114.4
Q ss_pred hcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHH--HHHhcCCHHH
Q 038364 750 KSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITF--TALLA--ACKNSGLVEE 822 (1076)
Q Consensus 750 k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~--~~ll~--a~~~~g~~~e 822 (1076)
-.|+..+|...++++.+ .|..+|+---.+|.-.|+.+.-...+++.... ..||...| ..=+- ++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45777788777887764 58889999999999999999999999988764 35555333 22222 3567899999
Q ss_pred HHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhCCCCC-------CHHHHHHHHHHHHHcCCchHHHHH
Q 038364 823 GWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTMPFKP-------DATIWGALLGSCRIHGHLEYAEIA 894 (1076)
Q Consensus 823 A~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m~~~p-------d~~~~~~Ll~a~~~~g~~e~A~~~ 894 (1076)
|.+.-++..+ +.|. ...-.+....+.-.|+..|+.++..+-...- ...-|...+ .+...+.++.|+++
T Consensus 194 AEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al-~~iE~aeye~aleI 269 (491)
T KOG2610|consen 194 AEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTAL-FHIEGAEYEKALEI 269 (491)
T ss_pred HHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHH-hhhcccchhHHHHH
Confidence 9998776643 3332 3344467778888999999999998864211 111222222 12334789999999
Q ss_pred HHHHh--cCCCCCchh---HHHHHHHHHHcCChHHHHHHHHHH
Q 038364 895 SRRLF--KLEPCNSAN---YNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 895 ~~~l~--~l~P~~~~~---y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
|++-+ +++.+|..+ |.-+-.+..+...|.+-.++-+.+
T Consensus 270 yD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~l 312 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADSL 312 (491)
T ss_pred HHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhhh
Confidence 97643 455666533 333344445555555555444433
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.90 E-value=8.9 Score=41.32 Aligned_cols=62 Identities=18% Similarity=0.091 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC
Q 038364 844 SCMVDLLGKAGYLDEAWDFIRTM----PFKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 844 ~~li~~l~r~G~l~eA~~l~~~m----~~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
-.|...+...|++++|...|..+ |-.|- +...--|.......|+.++|...++++.+--|+.
T Consensus 182 yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 182 YWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 34444444444444444444333 11111 1233333444445555555555555555555554
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.68 E-value=33 Score=35.65 Aligned_cols=179 Identities=17% Similarity=0.126 Sum_probs=97.0
Q ss_pred HhhcCCHHHHHHHHHhcC--CCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHH
Q 038364 748 YSKSGNLKSAREVFRKSA--NKT-LASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEG 823 (1076)
Q Consensus 748 y~k~G~~~~A~~vf~~m~--~~d-~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA 823 (1076)
|-..|-++-|+--|.+.. .|+ +..+|-+.--+...|+++.|.+.|+...+ +.|.- .++..---++--.|++.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhh
Confidence 444555666665555433 233 35677777777788888888888888777 44433 2222212234456777777
Q ss_pred HHHHHHhhhcCCCCCCcccHHHH-HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCC
Q 038364 824 WKYFDSMSTDYNIIPTIEHYSCM-VDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLE 902 (1076)
Q Consensus 824 ~~~~~~m~~~~g~~p~~~~y~~l-i~~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~ 902 (1076)
.+-|...-.. .|+.. |.++ +-+-.+.-+..+|..-+.+--...|..-|+..+-.+.- |+.. -+.+++++.+-.
T Consensus 153 q~d~~~fYQ~---D~~DP-fR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a 226 (297)
T COG4785 153 QDDLLAFYQD---DPNDP-FRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADA 226 (297)
T ss_pred HHHHHHHHhc---CCCCh-HHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhc
Confidence 7655544332 23211 2221 11122334455555433322123455566665544322 1111 112233333222
Q ss_pred CCC-------chhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 903 PCN-------SANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 903 P~~-------~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
.++ .++|.-|+..|-..|..++|..+++....
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 222 47899999999999999999999998743
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=83.07 E-value=63 Score=36.64 Aligned_cols=148 Identities=11% Similarity=-0.042 Sum_probs=73.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC--ccc
Q 038364 768 TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQP---DAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT--IEH 842 (1076)
Q Consensus 768 d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~P---d~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~--~~~ 842 (1076)
...+|..++..+.++|+++.|...+.++...+..+ +......-....-..|+-++|...++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 34567777888888888888888877777643211 1122222233345667777777777666552 11111 111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHc------CCchHHHHHHHHHhcCCCCCchhHHHHHHH
Q 038364 843 YSCMVDLLGKAGYLDEAWDF-IRTMPFKPDATIWGALLGSCRIH------GHLEYAEIASRRLFKLEPCNSANYNLMMNL 915 (1076)
Q Consensus 843 y~~li~~l~r~G~l~eA~~l-~~~m~~~pd~~~~~~Ll~a~~~~------g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~ 915 (1076)
...+...+.. ..+..... ........-...+..+..-+... ++.+.+...|+++.++.|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111100000 00000000 00000000011222222333333 788889999999999999887777777776
Q ss_pred HHH
Q 038364 916 LAM 918 (1076)
Q Consensus 916 y~~ 918 (1076)
+.+
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 643
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=82.76 E-value=0.13 Score=50.51 Aligned_cols=121 Identities=19% Similarity=0.255 Sum_probs=78.1
Q ss_pred chhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHh
Q 038364 635 SWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCG 714 (1076)
Q Consensus 635 t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~ 714 (1076)
....+|+.+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.
T Consensus 9 ~~~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~ 81 (143)
T PF00637_consen 9 EISEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCE 81 (143)
T ss_dssp CSCCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHH
T ss_pred CHHHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHH
Confidence 345678888888999999999999987665667888999999999998888888887722 1233345666666
Q ss_pred cCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcC-----------CCChHHHHHHHHHHHHcC
Q 038364 715 GLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSA-----------NKTLASWNCMIMGFAIYG 783 (1076)
Q Consensus 715 ~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-----------~~d~~s~n~li~~~~~~g 783 (1076)
+.+.++.+.. .|.+.|++++|.++...+. ..+...|..++..+..++
T Consensus 82 ~~~l~~~a~~----------------------Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~~ 139 (143)
T PF00637_consen 82 KHGLYEEAVY----------------------LYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDSK 139 (143)
T ss_dssp TTTSHHHHHH----------------------HHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTST
T ss_pred hcchHHHHHH----------------------HHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 6655554444 4455555555554322111 134567777777766554
Q ss_pred C
Q 038364 784 N 784 (1076)
Q Consensus 784 ~ 784 (1076)
.
T Consensus 140 ~ 140 (143)
T PF00637_consen 140 P 140 (143)
T ss_dssp C
T ss_pred c
Confidence 3
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.61 E-value=20 Score=43.34 Aligned_cols=204 Identities=16% Similarity=0.181 Sum_probs=112.6
Q ss_pred HHHHHhHhcCCCCch---HHHHHHHHHHhcCCChhHHHHHHHHHhhcCC------CCC-hhhHHHHHHHHhcCCCchhHH
Q 038364 654 VIIHHMKNSGIYPNV---VTWTSLISGSLQNENYRESLKFFIQMQQEDI------KPN-STTMSSLLQTCGGLGLLQNGK 723 (1076)
Q Consensus 654 ~lf~~m~~~gi~pd~---~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi------~pd-~~t~~~lL~a~~~~g~~~~a~ 723 (1076)
.++++|..+--.|++ .+-..|+-.|....+++...++.+.+..-.- .++ .+.|.-.|+-=.+-|+-++|.
T Consensus 184 ~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL 263 (1226)
T KOG4279|consen 184 DYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKAL 263 (1226)
T ss_pred HHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHH
Confidence 344555543223333 2233344445555566666666666653210 011 122333333334556777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 038364 724 EIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD 803 (1076)
Q Consensus 724 ~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd 803 (1076)
.+.--+++..-. ..-+|||-||++- +.|- +-+.|...+..+.|+++|++.-+ +.|.
T Consensus 264 ~~~l~lve~eg~-------vapDm~Cl~GRIY------KDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~ 319 (1226)
T KOG4279|consen 264 NTVLPLVEKEGP-------VAPDMYCLCGRIY------KDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPL 319 (1226)
T ss_pred HHHHHHHHhcCC-------CCCceeeeechhh------hhhh---------hccCCcchhhHHHHHHHHHHHhc--cCch
Confidence 665555543111 1124677788643 3321 12345556667789999999887 7887
Q ss_pred HHH---HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038364 804 AIT---FTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLG 880 (1076)
Q Consensus 804 ~~t---~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~ 880 (1076)
..+ +..||.+-.+ .++...++ +.+ | -.|-.+++|.|.++.-.++++-. ..+.
T Consensus 320 ~~sGIN~atLL~aaG~--~Fens~El-q~I----g--------mkLn~LlgrKG~leklq~YWdV~----------~y~~ 374 (1226)
T KOG4279|consen 320 EYSGINLATLLRAAGE--HFENSLEL-QQI----G--------MKLNSLLGRKGALEKLQEYWDVA----------TYFE 374 (1226)
T ss_pred hhccccHHHHHHHhhh--hccchHHH-HHH----H--------HHHHHHhhccchHHHHHHHHhHH----------Hhhh
Confidence 753 4444443221 12222221 111 1 13456789999999888877542 3455
Q ss_pred HHHHcCCchHHHHHHHHHhcCCCCCc
Q 038364 881 SCRIHGHLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 881 a~~~~g~~e~A~~~~~~l~~l~P~~~ 906 (1076)
+-.-.+|+.+|..+++.++++.|...
T Consensus 375 asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 375 ASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred hhhhccCHHHHHHHHHHHhccCCcee
Confidence 66667899999999999999998653
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.57 E-value=2.9 Score=39.46 Aligned_cols=56 Identities=18% Similarity=0.056 Sum_probs=51.3
Q ss_pred HHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 880 GSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 880 ~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
-+....|+.+.|++.|.+.+.+-|+++++|+..+..|.-+|+.++|.+-+++..+.
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 34677899999999999999999999999999999999999999999999887653
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=82.44 E-value=85 Score=34.70 Aligned_cols=139 Identities=8% Similarity=-0.024 Sum_probs=77.2
Q ss_pred CCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCccchhhhhhh
Q 038364 564 DYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKG-LFVNAKKMLNQMEEEEIKPDLVSWNSLVSG 642 (1076)
Q Consensus 564 ~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g-~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~ 642 (1076)
.++..+-...+.++.+.++.+....+..-+..+|...-...+.++.+.+ ...++...+..+.. .+|...-...+.+
T Consensus 139 D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~a 215 (280)
T PRK09687 139 DKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIG 215 (280)
T ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHH
Confidence 3455666667777777776544444444555555555555555555543 23456666655553 3455556666777
Q ss_pred hhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHh
Q 038364 643 YSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCG 714 (1076)
Q Consensus 643 y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~ 714 (1076)
+.+.|+. .|...+-...+.+ + ..-..+.++...|.. +|+..+.++.+. .||..+-...+.+|.
T Consensus 216 Lg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 216 LALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 7777764 4444444444321 2 233556666776664 567777666642 345555555555543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=82.07 E-value=39 Score=32.39 Aligned_cols=60 Identities=12% Similarity=0.059 Sum_probs=25.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 038364 467 SMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLG 527 (1076)
Q Consensus 467 ~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~g 527 (1076)
.-++.+.+.|+-+.-.++.+++.. +-++++...-.+..+|.+.|+..++-+++++..+.|
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 334445555555555555555443 222344444444455555555555555555554444
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=82.00 E-value=90 Score=38.76 Aligned_cols=21 Identities=19% Similarity=0.490 Sum_probs=14.7
Q ss_pred HhcCCChhHHHHHHHHHhhcCCCC
Q 038364 678 SLQNENYRESLKFFIQMQQEDIKP 701 (1076)
Q Consensus 678 ~~~~g~~~eAl~l~~~m~~~gi~p 701 (1076)
+..+|++++|++.++++ ++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L---~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKL---DLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHT---T-S-
T ss_pred HHHcCCHHHHHHHHHhC---CCCC
Confidence 56789999999988888 4666
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=81.66 E-value=2.1 Score=30.84 Aligned_cols=26 Identities=8% Similarity=0.024 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHH
Q 038364 908 NYNLMMNLLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 908 ~y~~L~~~y~~~G~~~eA~~~~~~m~ 933 (1076)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999853
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=81.65 E-value=1.6 Score=30.62 Aligned_cols=31 Identities=19% Similarity=0.067 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhcCCCC
Q 038364 874 IWGALLGSCRIHGHLEYAEIASRRLFKLEPC 904 (1076)
Q Consensus 874 ~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~ 904 (1076)
+|..+...+...|++++|...+++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666677777778888888888888777774
|
... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=81.56 E-value=22 Score=39.65 Aligned_cols=19 Identities=11% Similarity=0.090 Sum_probs=8.4
Q ss_pred HHHHHHHHHcCCCCchhHH
Q 038364 552 RESHGYILRNGLDYDLYVG 570 (1076)
Q Consensus 552 ~~i~~~~~~~g~~~d~~v~ 570 (1076)
..+++.+.+.|+..+..++
T Consensus 82 ~~~y~~L~~~gFk~~~y~~ 100 (297)
T PF13170_consen 82 LDIYEKLKEAGFKRSEYLY 100 (297)
T ss_pred HHHHHHHHHhccCccChHH
Confidence 3444444444444444333
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.1 bits (154), Expect = 2e-10
Identities = 30/218 (13%), Positives = 67/218 (30%), Gaps = 8/218 (3%)
Query: 518 TLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMY 577
L + P ++ +LQ L + G + L +
Sbjct: 78 CLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCC 137
Query: 578 VKNDCLQNAQEVFDNMKNR-------NIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIK 630
+ D L A + + + +N+++ G+ +G F +L +++ +
Sbjct: 138 LLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT 197
Query: 631 PDLVSWNSLVSGYSIWGQSKEALV-IIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLK 689
PDL+S+ + + Q + + M G+ + L+S + + K
Sbjct: 198 PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257
Query: 690 FFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHC 727
P S LL+ + ++H
Sbjct: 258 VKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHL 295
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.8 bits (143), Expect = 4e-09
Identities = 32/257 (12%), Positives = 74/257 (28%), Gaps = 16/257 (6%)
Query: 617 AKKMLNQMEEEEIKPDLVSWNSLVSGYSI-WGQSKEALVIIHHMKNSGIYPNVVTWTSLI 675
AK + ++++ + + S + L + + + + + T
Sbjct: 27 AKILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQA 86
Query: 676 SGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFI 735
S E L+ D++ + S Q G + +
Sbjct: 87 PESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSG------QQQRLLAFF------ 134
Query: 736 KDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHEL 795
+ T + + L +K TL +N +++G+A G KE + + +
Sbjct: 135 -KCCLLTDQLPLAHHL--LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 796 LETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGY 855
+ G PD +++ A L + + + + ++ +A
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251
Query: 856 LDEAWDFIRTMPFKPDA 872
L T P
Sbjct: 252 LKAVHKVKPTFSLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.5 bits (137), Expect = 2e-08
Identities = 18/160 (11%), Positives = 45/160 (28%), Gaps = 8/160 (5%)
Query: 380 AIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLIS 439
A L + + + ++LQ + + G ++ L
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 440 MYSRNNKLELATRVFDSMKDH-------NLSSWNSMISSYTGLGYVDVAWSLFNKMNSSR 492
++L LA + L +N+++ + G + + +
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 493 IQPDIITWNCLLSGHFTHGSY-QNVLTLLRGMQSLGFRPN 531
+ PD++++ L + L M G +
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQ 235
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 56.0 bits (133), Expect = 7e-08
Identities = 39/332 (11%), Positives = 97/332 (29%), Gaps = 20/332 (6%)
Query: 369 MVKLRNEKWENAIK---LFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKS 425
L +K ++ L ++Q + + + LQ ++ + + ++
Sbjct: 27 AKILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQA 86
Query: 426 ALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLS----SWNSMISSYTGLGYVDVA 481
L+ L++ LS + + +A
Sbjct: 87 PESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLA 146
Query: 482 WSLFNK---MNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVV 538
L R + +N ++ G G+++ ++ +L ++ G P+ S +
Sbjct: 147 HHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206
Query: 539 LQAVTEL-RLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNR- 596
LQ + + + + GL L+ + L+ +V
Sbjct: 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPP 266
Query: 597 ---NIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSW---NSLVSGYSIWGQSK 650
V + L+ K V+ K+ ++ + + S V S+ +
Sbjct: 267 QLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTL 326
Query: 651 EALVIIHHMKNSGIYPNVVTWTSLISGSLQNE 682
+ + H K + W + +L+
Sbjct: 327 PSKEVKHARKTLKTLRD--QWEKALCRALRET 356
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.4 bits (121), Expect = 2e-06
Identities = 36/361 (9%), Positives = 97/361 (26%), Gaps = 25/361 (6%)
Query: 366 EIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVG----AFHEGKQIHGY 421
++ + + + + ++ + C A H HG
Sbjct: 97 RLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQ 156
Query: 422 VLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDH----NLSSWNSMISSYTGLG- 476
K L L + N ++ ++R + V +KD +L S+ + +
Sbjct: 157 RQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ 215
Query: 477 YVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVS 536
+M+ ++ + LLS + V + P + S
Sbjct: 216 DAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTS 275
Query: 537 VVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEV----FDN 592
+L+ V Y ++ + L ++++ V +
Sbjct: 276 KLLRDV-------YAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPS 328
Query: 593 MKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEA 652
+ ++ + K L ++ N++E E + + L + + +
Sbjct: 329 KEVKHARKTLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFL----CLLDEREVV 384
Query: 653 LVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQT 712
+++ ++ T + + + + Q + L
Sbjct: 385 RMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQNHYRKYLCLLASD 444
Query: 713 C 713
Sbjct: 445 A 445
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.4 bits (103), Expect = 2e-04
Identities = 14/134 (10%), Positives = 40/134 (29%), Gaps = 7/134 (5%)
Query: 334 ALMNFYGKCRDVESANKLF------SEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREM 387
A + A+ L + L ++N +++ R ++ + + +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 388 QFSSAKAISRTIVKMLQACAKVGAFHEG-KQIHGYVLKSALESNLSVCNCLISMYSRNNK 446
+ + + LQ + ++ + + L+ L+S R
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251
Query: 447 LELATRVFDSMKDH 460
L+ +V +
Sbjct: 252 LKAVHKVKPTFSLP 265
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 4e-08
Identities = 92/700 (13%), Positives = 209/700 (29%), Gaps = 221/700 (31%)
Query: 263 SFLEDYESFGGEVQELLEVWGELHGKGVIFRSRILTIILKLCTKLMA----FWLGVEVHA 318
+F+++++ +VQ++ + I + I+ + FW +
Sbjct: 28 AFVDNFDCK--DVQDMPKS---------ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 319 SLIKRGFDFDVHLKCALMNFYG--------KCRDVESANKLFSEVSDLEDDLLWNEI-IM 369
++++ F ++ L Y + R +++ E + D L+N+ +
Sbjct: 77 EMVQK---F---VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE----QRDRLYNDNQVF 126
Query: 370 VKL---RNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSA 426
K R + + + E++ AK + I +L G+ GK + A
Sbjct: 127 AKYNVSRLQPYLKLRQALLELR--PAKNV--LIDGVL------GS---GKT----WV--A 167
Query: 427 LESNLSVCNCLISMYSRNNKLE--LATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSL 484
L+ VC + K++ + ++F W ++ + + +++ L
Sbjct: 168 LD----VC--------LSYKVQCKMDFKIF----------WLNLKNCNSPETVLEMLQKL 205
Query: 485 FNKM---------NSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSV 535
++ +SS I+ I + L Y+N L +L +Q+
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN---------- 255
Query: 536 SVVLQAVT-ELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMK 594
+ A ++L R V L + L + +
Sbjct: 256 AKAWNAFNLSCKILLTTR-------------FKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 595 NRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALV 654
++++ K L+ +++ ++++ N SI +S
Sbjct: 303 VKSLLL------------------KYLD-CRPQDLPREVLTTNPRR--LSIIAES----- 336
Query: 655 IIHHMKNSGIYPNVVTWTSLISGSLQNENYR----ESLKFFIQMQQEDIKPNSTTMSSLL 710
I TW +N++ + L I+ ++P +
Sbjct: 337 -IRDGLA--------TW----------DNWKHVNCDKLTTIIESSLNVLEPA--EYRKMF 375
Query: 711 QTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLA 770
+ F A++ T L+ + V K +L
Sbjct: 376 DRLS----------V--------FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 771 SWNCMIMGFAIYGNGKEAILLFHEL-LETGFQPDAIT---------FTALLAACKNSGLV 820
KE+ + + LE + + + + +
Sbjct: 418 E-----------KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 821 EEGWKYFDSMSTDYNIIP----TIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWG 876
+YF Y+ I IEH + L +LD + F+ + D+T W
Sbjct: 467 PYLDQYF------YSHIGHHLKNIEHPE-RMTLFRMV-FLD--FRFLEQ-KIRHDSTAWN 515
Query: 877 ALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLL 916
A L++ + + +P N +++ L
Sbjct: 516 ASGSILNTLQQLKFYK---PYICDNDPKYERLVNAILDFL 552
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 1e-07
Identities = 100/702 (14%), Positives = 196/702 (27%), Gaps = 242/702 (34%)
Query: 143 HSIYHHFNTRTSINQNRHSHKPNSITNSPTSLALPPTDTLAKQAQLSCISSGF-CFLNET 201
H +HH + T ++++ +K D L F C +
Sbjct: 1 HHHHHHMDFET--GEHQYQYK----------------DIL--SVFEDAFVDNFDCKDVQD 40
Query: 202 NKFRCLSSVKSKHAQMIKMGKIWNSDDMVKSLIFHYLEFGDF----TSAAKAFFLYFSRS 257
LS + H I S D V F + F R
Sbjct: 41 MPKSILSKEEIDH--------IIMSKDAVSGT---LRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 258 YADW--SSFLEDYESFGGEVQELLEVWGELHGKGVIFRSRILTI---ILKLCTKL----- 307
+ S + + +E L+ +F ++ LKL L
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 308 --------MA----FWLGVEVHASL-IKRGFDFDVHLKCALMNFYGKCRDVESA----NK 350
+ W+ ++V S ++ DF + +N C E+ K
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW----LNL-KNCNSPETVLEMLQK 204
Query: 351 LFSEVSDLEDDLLWNEIIMVKLRNEKWENAIK-LFREMQFSSAKAI-----SRTIVKMLQ 404
L ++ D + +KLR + ++ L + + + + +
Sbjct: 205 LLYQI-DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN--- 260
Query: 405 ACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSS 464
AF+ +I +L + V + L + + + L+ + D S
Sbjct: 261 ------AFNLSCKI---LLTT---RFKQVTDFLSAATTTHISLDHHSMTLT--PDEVKS- 305
Query: 465 WNSMISSYTGLGYVD----------VAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQ 514
++ Y D S+ + I+ + TW+ ++ H +
Sbjct: 306 ---LLLKYLDCRPQDLPREVLTTNPRRLSIIAES----IRDGLATWD-----NWKHVNCD 353
Query: 515 ----------NVLT--LLRGM-QSLG-FRPN-------------GSSVSVVLQAVTELR- 546
NVL R M L F P+ S V+ V +L
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 547 ---LLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNS 603
+ K +ES I +Y +++ VK + N + +R+IV +
Sbjct: 414 YSLVEKQPKESTISI------PSIY-----LELKVKLE---NEYAL-----HRSIVDHYN 454
Query: 604 LISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSG 663
+ + L + Y I HH+KN
Sbjct: 455 IPKTFDSDDLIPPY----------------------LDQYFYS-------HIGHHLKNIE 485
Query: 664 ----------IYPNV-----------VTWTSLISGSLQN-----ENYRE----------- 686
++ + W + SGS+ N + Y+
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNA--SGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 687 ---SLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEI 725
++ F+ +E++ + + LL+ + L+ + I
Sbjct: 544 LVNAILDFLPKIEENLI--CSKYTDLLR----IALMAEDEAI 579
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1076 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.92 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.87 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.86 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.85 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.83 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.82 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.82 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.82 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.74 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.73 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.72 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.72 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.69 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.66 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.66 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.65 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.64 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.63 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.63 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.58 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.57 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.57 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.57 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.57 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.54 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.53 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.5 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.44 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.44 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.39 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.38 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.37 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.34 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.32 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.29 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.28 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.28 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.27 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.26 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.25 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.25 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.25 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.24 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.22 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.21 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.21 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.19 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.19 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.19 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.19 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.19 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.19 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.17 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.14 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.14 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.12 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.1 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.09 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.06 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.06 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.05 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.04 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.04 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.04 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.01 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.0 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.0 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.94 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.93 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.9 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.89 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.84 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.83 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.81 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.78 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.78 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.78 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.68 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.67 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.67 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.63 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.63 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.6 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.58 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.56 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.56 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.56 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.55 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.55 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.51 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.47 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.45 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.42 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.41 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.4 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.4 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.37 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.35 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.34 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.32 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.32 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.31 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.31 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.3 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.3 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.26 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.25 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.22 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.22 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.2 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.19 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.18 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.18 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.18 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.16 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.15 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.15 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.13 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.09 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.07 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.06 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.06 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.06 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.06 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.05 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.04 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.04 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.04 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.01 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 97.99 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.97 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 97.96 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.94 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 97.93 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.92 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 97.88 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.87 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 97.86 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.86 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.85 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.84 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.82 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.8 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 97.8 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.79 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.78 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.76 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.72 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.71 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 97.71 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.71 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 97.69 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.68 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.67 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.65 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.63 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.63 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.59 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.57 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.56 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.56 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.55 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.54 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.53 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.51 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.5 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.49 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.48 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.47 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.47 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.44 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.41 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.36 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.34 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.33 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.32 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.31 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.28 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.24 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.23 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.22 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.22 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.22 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.22 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.21 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.18 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.17 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.15 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.15 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.14 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.09 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.04 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.03 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.9 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.81 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.68 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.5 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.46 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.41 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.29 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.2 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.16 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.13 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.02 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 95.94 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.9 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.66 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.61 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.6 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.55 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 94.89 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.8 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 94.72 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.44 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.96 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.84 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.57 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 93.32 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.09 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 92.52 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 90.16 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.38 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 88.24 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 87.61 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 87.15 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.06 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 85.64 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 85.37 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 84.31 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 83.69 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 83.63 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 81.51 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 81.12 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=398.48 Aligned_cols=518 Identities=10% Similarity=0.005 Sum_probs=365.9
Q ss_pred HHhcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHH
Q 038364 338 FYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQ 417 (1076)
Q Consensus 338 ~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 417 (1076)
.+.++|.+..++.+|+.++. +++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|...|++++|.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSL-SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccccCccCCCCCccccchH-HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 46678888999999999998 8999999999999999999999999999984 46788999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCh
Q 038364 418 IHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDI 497 (1076)
Q Consensus 418 i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~ 497 (1076)
++..++.. .++..+++.++.+|.++|++++|.++|+++...+.. ..++.+.+ -...+..++.
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~-----------~~~~~~~~~~ 200 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKD-----EKNANKLL-----------MQDGGIKLEA 200 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC--------------------------CCCSSCCHHH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccc-----cccccccc-----------ccccccchhH
Confidence 99987543 678899999999999999999999999965333200 00000000 0112333345
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchH---HHHHH-HHHHHHcCCCCchhHHHHH
Q 038364 498 ITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLK---YGRES-HGYILRNGLDYDLYVGTSL 573 (1076)
Q Consensus 498 ~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~---~a~~i-~~~~~~~g~~~d~~v~~aL 573 (1076)
.+|+.++.+|.+.|++++|+++|++|.+.+ |+..+....+..+....... ....+ +..+...+......+++.+
T Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 278 (597)
T 2xpi_A 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLK 278 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHH
Confidence 555555555555555555555555555543 44332222221111111111 11111 3333334444456677888
Q ss_pred HHHHHhCCCHHHHHHHHhhcCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhH
Q 038364 574 MDMYVKNDCLQNAQEVFDNMKN--RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKE 651 (1076)
Q Consensus 574 i~~y~k~g~~~~A~~lf~~m~~--~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~ 651 (1076)
+.+|.++|++++|.++|+++.+ +|..+|+.++.+|.+.|++++|+++|++|.+.+ ..+..+++.++.+|.+.|++++
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 357 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNK 357 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHH
T ss_pred HHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999999987 899999999999999999999999999999776 3477889999999999999999
Q ss_pred HHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHH
Q 038364 652 ALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLK 731 (1076)
Q Consensus 652 A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~ 731 (1076)
|.++|+++.+.. ..+..+|+.++..|.+.|++++|.++|+++.+. .|
T Consensus 358 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~------------------------------ 404 (597)
T 2xpi_A 358 LYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DP------------------------------ 404 (597)
T ss_dssp HHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT------------------------------
T ss_pred HHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CC------------------------------
Confidence 999999998542 346788888888888888888888888888652 22
Q ss_pred cCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 038364 732 NGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFT 808 (1076)
Q Consensus 732 ~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~ 808 (1076)
.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|++|.+.. ..+..+|.
T Consensus 405 ----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 479 (597)
T 2xpi_A 405 ----QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLN 479 (597)
T ss_dssp ----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHH
T ss_pred ----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 2344556666666666777777766665542 356677777777777777777777777777642 33566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcC---CCCCC--cccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 038364 809 ALLAACKNSGLVEEGWKYFDSMSTDY---NIIPT--IEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGS 881 (1076)
Q Consensus 809 ~ll~a~~~~g~~~eA~~~~~~m~~~~---g~~p~--~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a 881 (1076)
.+...|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++++ .. +.+..+|..+..+
T Consensus 480 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 559 (597)
T 2xpi_A 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALV 559 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 77777777777777777777776532 45666 568888888888888888888888876 22 3477889999999
Q ss_pred HHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 882 CRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 882 ~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
|...|++++|...++++++++|+++..|..|+++|.
T Consensus 560 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 560 YLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 999999999999999999999999999999988875
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-40 Score=404.20 Aligned_cols=492 Identities=10% Similarity=-0.021 Sum_probs=367.2
Q ss_pred HHHHccCChhhHHHHhhhcCCCCcccHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhhHH
Q 038364 235 FHYLEFGDFTSAAKAFFLYFSRSYADWSSFLEDYESFGGEVQELLEVWGELHGKGVIFRSRILTIILKLCTKLMAFWLGV 314 (1076)
Q Consensus 235 ~~y~~~g~~~~A~~~f~~~~~~~~~~wn~li~~~~~~g~~~~~al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 314 (1076)
..+.++|.+..++.+|+.++.+++..|+.++..|.+.|++ ++|+.+|.+|.. ..||..++..++.+|.+.|+++.|.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQY-KCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCc-hHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHH
Confidence 4467789999999999999999999999999999999999 999999999984 5678899999999999999999999
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhcCCCC------------------ChhhHHHHHHHHHhCCC
Q 038364 315 EVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSDLE------------------DDLLWNEIIMVKLRNEK 376 (1076)
Q Consensus 315 ~~~~~~~~~g~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~~~------------------d~~s~n~li~~~~~~g~ 376 (1076)
+++..+... .++..+++.++.+|.++|++++|.++|+++.... ++++|+.++.+|.+.|+
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 999987643 5789999999999999999999999999544313 48899999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCcH--HHHHH-HHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 038364 377 WENAIKLFREMQFSSAKAIS-RTIVKMLQACAKVGAFH--EGKQI-HGYVLKSALESNLSVCNCLISMYSRNNKLELATR 452 (1076)
Q Consensus 377 ~~eAl~lf~~M~~~g~~p~~-~t~~~ll~a~~~~g~~~--~a~~i-~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~ 452 (1076)
+++|+++|++|.+.+ |+. ..+..+...+...+..+ .+..+ +..+...+......+++.++.+|.++|++++|.+
T Consensus 216 ~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 216 FDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 999999999998754 443 33444433222221111 11111 3444444545556677788888999999999999
Q ss_pred HHHhcCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 038364 453 VFDSMKD--HNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRP 530 (1076)
Q Consensus 453 lf~~m~~--~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~p 530 (1076)
+|+++.+ ++..+|+.++.+|.+.|++++|+++|++|.+.+.. +..+|+.++.++.+.|++++|.+++++|.+.. |
T Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~ 370 (597)
T 2xpi_A 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH--P 370 (597)
T ss_dssp HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T
T ss_pred HHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--c
Confidence 9999877 78889999999999999999999999999876654 67778888888888888888877777776543 3
Q ss_pred CcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHH
Q 038364 531 NGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISG 607 (1076)
Q Consensus 531 d~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~ 607 (1076)
+ +..+++.++.+|.++|++++|.++|+++.+ .+..+|+.++.+
T Consensus 371 ~----------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 416 (597)
T 2xpi_A 371 E----------------------------------KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHS 416 (597)
T ss_dssp T----------------------------------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred c----------------------------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 2 456778888999999999999999988753 568899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHH
Q 038364 608 YCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRES 687 (1076)
Q Consensus 608 ~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eA 687 (1076)
|.+.|++++|+++|++|.+.+ ..+..+|+.++.+|.+.|++++|.++|+++.+.. ..+..+|+.++..|.+.|++++|
T Consensus 417 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 494 (597)
T 2xpi_A 417 FAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTA 494 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999998764 3478889999999999999999999999998753 33678899999999999999999
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCC--hhhHHHHHHHHhhcCCHHHHHHHHHhcC
Q 038364 688 LKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKD--AYVATGLIDMYSKSGNLKSAREVFRKSA 765 (1076)
Q Consensus 688 l~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d--~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 765 (1076)
+++|+++.+.. .+.+..|+ ..++..++.+|.+.|++++|.+.|+++.
T Consensus 495 ~~~~~~~~~~~-------------------------------~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 495 INHFQNALLLV-------------------------------KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL 543 (597)
T ss_dssp HHHHHHHHHHH-------------------------------HHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh-------------------------------hccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999886530 01123343 4455666666666666666666666544
Q ss_pred ---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 038364 766 ---NKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAI 805 (1076)
Q Consensus 766 ---~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~ 805 (1076)
..+..+|..+..+|.+.|++++|.+.|+++.+ +.|+..
T Consensus 544 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~ 584 (597)
T 2xpi_A 544 LLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEI 584 (597)
T ss_dssp HHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCCh
Confidence 23556777777777777777777777777776 455543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7.1e-26 Score=269.71 Aligned_cols=184 Identities=15% Similarity=0.189 Sum_probs=150.6
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC---------cHHHHHHHHHHHHhCCCCCH
Q 038364 361 DLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGA---------FHEGKQIHGYVLKSALESNL 431 (1076)
Q Consensus 361 ~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~---------~~~a~~i~~~~~~~g~~~d~ 431 (1076)
...++.+|.+|++.|++++|+++|++|.+.|++||.+||+++|.+|++.+. ++.|.++++.|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 345888899999999999999999999999999999999999999987654 56788888888888888888
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHhcC----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 038364 432 SVCNCLISMYSRNNKLELATRVFDSMK----DHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGH 507 (1076)
Q Consensus 432 ~v~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~ 507 (1076)
.+||+||++|++.|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 888888888888888888888887774 4677788888888888888888888888888888888888888888888
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 038364 508 FTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTE 544 (1076)
Q Consensus 508 ~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~ 544 (1076)
++.|+.++|.++|++|.+.|..|+..||..++..++.
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 8888888888888888888877887777777777664
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-26 Score=271.79 Aligned_cols=205 Identities=17% Similarity=0.123 Sum_probs=119.3
Q ss_pred HHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCc---------hHH
Q 038364 481 AWSLFNKMNSSRIQPDI-ITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRL---------LKY 550 (1076)
Q Consensus 481 A~~lf~~M~~~g~~pd~-~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~---------~~~ 550 (1076)
+..+++++.+.+..+.+ ..++.+|++|++.|++++|+++|++|.+.|++||.+||+++|.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34444555554444332 23555555555556666666666666555555666666666666554432 444
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038364 551 GRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIK 630 (1076)
Q Consensus 551 a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~ 630 (1076)
|.++++.|.+.|+.||.. +||+||.+|++.|++++|.++|++|.+.|+.
T Consensus 89 A~~lf~~M~~~G~~Pd~~-------------------------------tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~ 137 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEA-------------------------------TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ 137 (501)
T ss_dssp HHHHHHHHHHTTCCCCHH-------------------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCCCHH-------------------------------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence 555555555555544444 4444445555555555555666666666777
Q ss_pred CCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHH
Q 038364 631 PDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLL 710 (1076)
Q Consensus 631 pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL 710 (1076)
||.+|||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|+.++|.++|++|.+.|..|+..||+.++
T Consensus 138 Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~ 217 (501)
T 4g26_A 138 PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIE 217 (501)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHH
T ss_pred CccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhcC
Q 038364 711 QTCGGL 716 (1076)
Q Consensus 711 ~a~~~~ 716 (1076)
..++..
T Consensus 218 ~~F~s~ 223 (501)
T 4g26_A 218 EWFKSE 223 (501)
T ss_dssp HHHHSH
T ss_pred HHHhcC
Confidence 666543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-22 Score=232.28 Aligned_cols=338 Identities=14% Similarity=0.107 Sum_probs=227.8
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc-cchhhhhhhhhhcCC
Q 038364 573 LMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDL-VSWNSLVSGYSIWGQ 648 (1076)
Q Consensus 573 Li~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~-~t~~~Li~~y~k~g~ 648 (1076)
+...+.+.|++++|...++.... .+..+|+.+...|.+.|++++|++.|+++.+. .|+. .+|..+...|.+.|+
T Consensus 39 l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~ 116 (388)
T 1w3b_A 39 LSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGD 116 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCC
Confidence 33344444444444444443321 23444555555555555555555555555443 2332 235555555555555
Q ss_pred hhHHHHHHHHhHhcCCCC-chHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCC-ChhhHHHHHHHHhcCCCchhHHHHH
Q 038364 649 SKEALVIIHHMKNSGIYP-NVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKP-NSTTMSSLLQTCGGLGLLQNGKEIH 726 (1076)
Q Consensus 649 ~~~A~~lf~~m~~~gi~p-d~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~p-d~~t~~~lL~a~~~~g~~~~a~~i~ 726 (1076)
+++|.+.|+++.+. .| +...+..+...+.+.|++++|.+.|+++.+. .| +..+|..+...+...|++++|...+
T Consensus 117 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 192 (388)
T 1w3b_A 117 MEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHF 192 (388)
T ss_dssp SSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555443 22 2334444555555555555555555555542 23 2345555555555556666666665
Q ss_pred HHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 038364 727 CLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSA---NKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD 803 (1076)
Q Consensus 727 ~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd 803 (1076)
+.+++.. +.+...+..+...|...|++++|...|++.. ..+..+|+.+...|...|++++|++.|+++.+ ..|+
T Consensus 193 ~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~ 269 (388)
T 1w3b_A 193 EKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPH 269 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSS
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 5555531 2234566677778888888888888887654 34567888889999999999999999999988 4554
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 038364 804 -AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLG 880 (1076)
Q Consensus 804 -~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~ 880 (1076)
..++..+...+...|++++|.+.|+++.+. .+.+...+..++..+.+.|++++|.+.++++ ...| +..+|..+..
T Consensus 270 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 347 (388)
T 1w3b_A 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS 347 (388)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 457888888899999999999999998864 2445778899999999999999999999987 3444 5778999999
Q ss_pred HHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCC
Q 038364 881 SCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNR 921 (1076)
Q Consensus 881 a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~ 921 (1076)
++...|++++|+..++++++++|+++..|..++.+|.+.|+
T Consensus 348 ~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 348 VLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999999999999999887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-21 Score=226.43 Aligned_cols=351 Identities=15% Similarity=0.115 Sum_probs=305.3
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCCh
Q 038364 573 LMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQS 649 (1076)
Q Consensus 573 Li~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~ 649 (1076)
+...+.+.|++++|.+.|+++.. .+...+..+...+.+.|++++|...++...+.. +.+..+|..+...|.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 34567788999999999887753 355677788888999999999999999988764 44667899999999999999
Q ss_pred hHHHHHHHHhHhcCCCCc-hHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCCh-hhHHHHHHHHhcCCCchhHHHHHH
Q 038364 650 KEALVIIHHMKNSGIYPN-VVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNS-TTMSSLLQTCGGLGLLQNGKEIHC 727 (1076)
Q Consensus 650 ~~A~~lf~~m~~~gi~pd-~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~-~t~~~lL~a~~~~g~~~~a~~i~~ 727 (1076)
++|.+.|+++.+. .|+ ...|..+..++.+.|++++|.+.|+++.+. .|+. ..+..+...+...|++++|.+.+.
T Consensus 84 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 84 QEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999874 344 567999999999999999999999999874 5654 456667778888999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-
Q 038364 728 LCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD- 803 (1076)
Q Consensus 728 ~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd- 803 (1076)
.+++. .+.+...+..+...|.+.|++++|.+.|+++.+ .+...|..+...+...|++++|+..|++..+ ..|+
T Consensus 160 ~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~ 236 (388)
T 1w3b_A 160 KAIET-QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNH 236 (388)
T ss_dssp HHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTC
T ss_pred HHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCC
Confidence 99885 233567889999999999999999999998763 4567899999999999999999999999988 4665
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 038364 804 AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTMP--FKPDATIWGALLG 880 (1076)
Q Consensus 804 ~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m~--~~pd~~~~~~Ll~ 880 (1076)
..++..+...+...|++++|.+.|+++.+. .|+ ...|..++..|.+.|++++|.+.++++. .+.+..+|..+..
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 568888999999999999999999999863 344 6789999999999999999999999972 4567889999999
Q ss_pred HHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 881 SCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 881 a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
.+...|++++|+..+++++++.|++...+..++.+|.+.|++++|.+.++++.+
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999965
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.5e-20 Score=220.04 Aligned_cols=433 Identities=9% Similarity=-0.027 Sum_probs=268.2
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCc-ccHHHHHH
Q 038364 462 LSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNG-SSVSVVLQ 540 (1076)
Q Consensus 462 ~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~-~t~~~ll~ 540 (1076)
...|......+.+.|++++|++.|+++.+.. ||..+|..+..++.+.|++++|+..++++.+.+ |+. ..+..+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHH
Confidence 3456667777888888888888888887765 578888888888888888888888888877655 443 34555555
Q ss_pred HHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 038364 541 AVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKM 620 (1076)
Q Consensus 541 a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~l 620 (1076)
++...|++++|...+..+.+.+.. +......++..+.+..... .+.+.
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~ 129 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMS-------------------------------KLKEK 129 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHH-------------------------------HHTTC
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHH-------------------------------HHHHH
Confidence 555666666666666655555432 2222222333332222222 22222
Q ss_pred HHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCC---------CCchHHHHHHHHHHhc---CCChhHHH
Q 038364 621 LNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGI---------YPNVVTWTSLISGSLQ---NENYRESL 688 (1076)
Q Consensus 621 f~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi---------~pd~~ty~~LI~~~~~---~g~~~eAl 688 (1076)
+..+...+..|+...+..-...............+...+..... ..+...|......+.. .|++++|+
T Consensus 130 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 209 (514)
T 2gw1_A 130 FGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKAD 209 (514)
T ss_dssp ---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHH
T ss_pred HHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHH
Confidence 22221111111111111111001111111111111111111000 1123333333333333 67777777
Q ss_pred HHHHHHhh-----cCCCC--------ChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHH
Q 038364 689 KFFIQMQQ-----EDIKP--------NSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLK 755 (1076)
Q Consensus 689 ~l~~~m~~-----~gi~p--------d~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~ 755 (1076)
++|+++.+ ....| +..++..+...+...|++++|...+..+++.. |+...+..+...|.+.|+++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~ 287 (514)
T 2gw1_A 210 ESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDST 287 (514)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCT
T ss_pred HHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHH
Confidence 77777765 21111 23456666667777777777777777777653 23666777778888888888
Q ss_pred HHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 038364 756 SAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQP-DAITFTALLAACKNSGLVEEGWKYFDSMS 831 (1076)
Q Consensus 756 ~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~P-d~~t~~~ll~a~~~~g~~~eA~~~~~~m~ 831 (1076)
+|.+.++++.+ .+...|..+...|...|++++|+..|+++.+. .| +...+..+...+...|++++|.++++.+.
T Consensus 288 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 365 (514)
T 2gw1_A 288 EYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAK 365 (514)
T ss_dssp TGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888876653 35567788888888888888888888888874 33 34567777777888888888888888877
Q ss_pred hcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHH---cCCchHHHHHHHHHhc
Q 038364 832 TDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM----PFKPD----ATIWGALLGSCRI---HGHLEYAEIASRRLFK 900 (1076)
Q Consensus 832 ~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m----~~~pd----~~~~~~Ll~a~~~---~g~~e~A~~~~~~l~~ 900 (1076)
+.. +.+...+..+...|.+.|++++|.+.++++ +..++ ..+|..+...+.. .|++++|...++++++
T Consensus 366 ~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 366 RKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp HHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred HHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 541 224567778888888888888888888776 22222 3478888888888 8889999999999888
Q ss_pred CCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 901 LEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 901 l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
++|+++..+..++.+|.+.|++++|.+.+++..+..
T Consensus 444 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 444 LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 888888888889999999999999999888886543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-20 Score=218.24 Aligned_cols=318 Identities=13% Similarity=0.057 Sum_probs=221.0
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhh
Q 038364 566 DLYVGTSLMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSG 642 (1076)
Q Consensus 566 d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~ 642 (1076)
+...+..+...|.+.|++++|..+|+++.. .+..+|..+...|.+.|++++|++.|+++.+.+ +.+..++..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 444555566666666666666666655432 345555555566666666666666666555543 1233444555555
Q ss_pred hhhcCChhHHHHHHHHhHhcCCCCc-h---HHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCC
Q 038364 643 YSIWGQSKEALVIIHHMKNSGIYPN-V---VTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGL 718 (1076)
Q Consensus 643 y~k~g~~~~A~~lf~~m~~~gi~pd-~---~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~ 718 (1076)
|.+.|++++|.+.|+++.+. .|+ . ..|..++..+...+ +..+...+...|+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGD 158 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCC
Confidence 55555555555555555442 122 2 34444433311100 1112233556677
Q ss_pred chhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038364 719 LQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSA---NKTLASWNCMIMGFAIYGNGKEAILLFHEL 795 (1076)
Q Consensus 719 ~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~Al~l~~~M 795 (1076)
+++|...+..+.+. ...+..++..+..+|.+.|++++|.+.|+++. ..+..+|+.+...|...|++++|+..|+++
T Consensus 159 ~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 159 YTAAIAFLDKILEV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777776664 23356777888888888888888888888765 356788999999999999999999999999
Q ss_pred HHCCCCCCHHH-HHHH------------HHHHHhcCCHHHHHHHHHHhhhcCCCCCC-----cccHHHHHHHHHhcCCHH
Q 038364 796 LETGFQPDAIT-FTAL------------LAACKNSGLVEEGWKYFDSMSTDYNIIPT-----IEHYSCMVDLLGKAGYLD 857 (1076)
Q Consensus 796 ~~~g~~Pd~~t-~~~l------------l~a~~~~g~~~eA~~~~~~m~~~~g~~p~-----~~~y~~li~~l~r~G~l~ 857 (1076)
.+ ..|+... +..+ ...|.+.|++++|.++|+++.+. .|+ ..+|..++.++.+.|+++
T Consensus 238 ~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 238 LK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 87 4666544 3333 67899999999999999999864 354 457899999999999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHH
Q 038364 858 EAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNL 915 (1076)
Q Consensus 858 eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~ 915 (1076)
+|.+.++++ ...| +..+|..+..+|...|++++|...++++++++|+++..+..++.+
T Consensus 313 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 313 EAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 999999987 3334 688999999999999999999999999999999999999999943
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-19 Score=212.06 Aligned_cols=445 Identities=10% Similarity=-0.035 Sum_probs=244.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 038364 434 CNCLISMYSRNNKLELATRVFDSMK--DHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHG 511 (1076)
Q Consensus 434 ~n~Li~~y~k~g~~~~A~~lf~~m~--~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g 511 (1076)
+..+...|.+.|++++|...|+++. .||...|..+...|.+.|++++|++.|+++.+.++. +..+|..+..++.+.|
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHh
Confidence 3444455566666666666666552 355666666666666666666666666666655433 5556666666666666
Q ss_pred ChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHH---HHHHHHhCCCHHHHHH
Q 038364 512 SYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTS---LMDMYVKNDCLQNAQE 588 (1076)
Q Consensus 512 ~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~a---Li~~y~k~g~~~~A~~ 588 (1076)
++++|+..|+++...+. ++......++..+........+.+.+..+.+.+..++...... .............+..
T Consensus 88 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp CHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 66666666666665542 2333333333333332222222222221111111111000000 0000000111111111
Q ss_pred HHhhcC---------CC-CHhHHHHHHHHHHh---cCChHHHHHHHHHHHH-----cCCCCCccchhhhhhhhhhcCChh
Q 038364 589 VFDNMK---------NR-NIVAWNSLISGYCF---KGLFVNAKKMLNQMEE-----EEIKPDLVSWNSLVSGYSIWGQSK 650 (1076)
Q Consensus 589 lf~~m~---------~~-d~~~~n~lI~~~~~---~g~~~~A~~lf~~M~~-----~g~~pd~~t~~~Li~~y~k~g~~~ 650 (1076)
.+.... .+ +...|......+.. .|++++|+..|+++.+ ....|+....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------------- 232 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL-------------- 232 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH--------------
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc--------------
Confidence 111111 11 13333333333333 6667777777766665 2112221100
Q ss_pred HHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHH
Q 038364 651 EALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCL 730 (1076)
Q Consensus 651 ~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~ 730 (1076)
-..+...|..+...+...|++++|.+.|+++.+.. |+..++..+...+...|++++|...+..++
T Consensus 233 -------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 297 (514)
T 2gw1_A 233 -------------KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKAL 297 (514)
T ss_dssp -------------HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred -------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 01123344444555555555555555555554432 224444455555555555555555555555
Q ss_pred HcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHH
Q 038364 731 KNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSA---NKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQP-DAIT 806 (1076)
Q Consensus 731 ~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~P-d~~t 806 (1076)
+. ...+..++..+...|.+.|++++|.+.|++.. ..+...|..+...|...|++++|+..|+++.+. .| +..+
T Consensus 298 ~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 374 (514)
T 2gw1_A 298 KL-DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEV 374 (514)
T ss_dssp TT-CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHH
T ss_pred hc-CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHH
Confidence 43 12234556666666777777777777776543 234566777777777777777777777777763 33 3456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----cccHHHHHHHHHh---cCCHHHHHHHHHhC-C-CCCCHHHHHH
Q 038364 807 FTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT----IEHYSCMVDLLGK---AGYLDEAWDFIRTM-P-FKPDATIWGA 877 (1076)
Q Consensus 807 ~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~----~~~y~~li~~l~r---~G~l~eA~~l~~~m-~-~~pd~~~~~~ 877 (1076)
+..+...+...|++++|.++++.+.+...-.++ ...+..+...|.+ .|++++|.+.++++ . .+.+..+|..
T Consensus 375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 454 (514)
T 2gw1_A 375 PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIG 454 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 667777788888888888888877653222222 3378888888888 89999999888886 2 2345678889
Q ss_pred HHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHH
Q 038364 878 LLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLM 912 (1076)
Q Consensus 878 Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L 912 (1076)
+...+...|++++|...++++++++|+++..+..+
T Consensus 455 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 455 LAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 99999999999999999999999999987776655
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.1e-19 Score=213.22 Aligned_cols=426 Identities=10% Similarity=0.002 Sum_probs=235.6
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 038364 463 SSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAV 542 (1076)
Q Consensus 463 ~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~ 542 (1076)
..|..+...+.+.|++++|++.|+++.+..+. +..+|..+..++.+.|++++|++.|+++.+.. |+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~----------- 91 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK--PD----------- 91 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT-----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-----------
Confidence 35666667777777777777777777766544 66777777777777777777777777776654 33
Q ss_pred HhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 038364 543 TELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLN 622 (1076)
Q Consensus 543 ~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~ 622 (1076)
+..++..+...|.+.|++++|...|+.+. .+....+..+..+...+...+|...++
T Consensus 92 -----------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~ 147 (537)
T 3fp2_A 92 -----------------------HSKALLRRASANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLN 147 (537)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHH
T ss_pred -----------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 22233344444455555555555554221 111122222333334444455555555
Q ss_pred HHHHcC--CCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCch-HHHHHHHHHHhcC--------CChhHHHHHH
Q 038364 623 QMEEEE--IKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNV-VTWTSLISGSLQN--------ENYRESLKFF 691 (1076)
Q Consensus 623 ~M~~~g--~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~-~ty~~LI~~~~~~--------g~~~eAl~l~ 691 (1076)
++.... ..+........+..|....+.+.+...+....+. .+.. ..+..+...+... |++++|.+++
T Consensus 148 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~ 225 (537)
T 3fp2_A 148 ENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMY 225 (537)
T ss_dssp HHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 553220 0111112223333333444444433333222211 1111 1222222222221 3556666666
Q ss_pred HHHhhcCCCCC--------hhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHh
Q 038364 692 IQMQQEDIKPN--------STTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRK 763 (1076)
Q Consensus 692 ~~m~~~gi~pd--------~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~ 763 (1076)
+++.+. .|+ ..++..+...+...|++++|...+..+++. .|+...+..+...|.+.|++++|.+.|++
T Consensus 226 ~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 301 (537)
T 3fp2_A 226 HSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQK 301 (537)
T ss_dssp HHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHH
T ss_pred HHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 666542 233 123444444555666666666666666663 34455666666666667777777766665
Q ss_pred cC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC
Q 038364 764 SA---NKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD-AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT 839 (1076)
Q Consensus 764 m~---~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd-~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~ 839 (1076)
.. ..+...|..+...+...|++++|+..|+++.+. .|+ ...+..+...+...|++++|.++++.+.+.. +.+
T Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~ 377 (537)
T 3fp2_A 302 AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTL 377 (537)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC
Confidence 54 234556667777777777777777777777663 333 3456666666777777777777777766531 223
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHHc----------CCchHHHHHHHHHhcC
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTMP--------FKPDATIWGALLGSCRIH----------GHLEYAEIASRRLFKL 901 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m~--------~~pd~~~~~~Ll~a~~~~----------g~~e~A~~~~~~l~~l 901 (1076)
...+..+...|.+.|++++|.+.++++. ..-....+..+...+... |++++|+..+++++++
T Consensus 378 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence 4566677777777777777777776641 111122234444556666 7888888888888888
Q ss_pred CCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 902 EPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 902 ~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
+|+++..+..++.+|.+.|++++|.+.+++..+..
T Consensus 458 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 458 DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 88887888888888888888888888888775543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-15 Score=186.69 Aligned_cols=285 Identities=14% Similarity=0.098 Sum_probs=222.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCC
Q 038364 604 LISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNEN 683 (1076)
Q Consensus 604 lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~ 683 (1076)
+...+...|.+++|..+|++.. -.....+.+ +-..|++++|.++.++.. +..+|..+..++.+.|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCC
Confidence 4456677888888888888742 011111222 226788888888888663 57788899999999999
Q ss_pred hhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHh
Q 038364 684 YRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRK 763 (1076)
Q Consensus 684 ~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~ 763 (1076)
+++|++.|.+. -|...|..+..+|.+.|+++++.+.+....+.. +++.+.+.++..|+|.+++++.....
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 99999999664 466778889999999999999999998888743 55555566999999999998644443
Q ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccH
Q 038364 764 SANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHY 843 (1076)
Q Consensus 764 m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y 843 (1076)
..++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.. +..+|
T Consensus 1191 -~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aW 1253 (1630)
T 1xi4_A 1191 -NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTW 1253 (1630)
T ss_pred -hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHH
Confidence 3556677888889999999999999999885 378888999999999999999887762 35788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHc--CC
Q 038364 844 SCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMS--NR 921 (1076)
Q Consensus 844 ~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~--G~ 921 (1076)
..+..++...|++..|........ -++..+..++.-|...|.+++|+.++++.++++|.+.+.|.-|+.+|++- ++
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~Ii--v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHH
Confidence 888888888999999988776543 34455668888999999999999999999999999999999999999875 45
Q ss_pred hHHHHHHHHH
Q 038364 922 WEDVERLRHS 931 (1076)
Q Consensus 922 ~~eA~~~~~~ 931 (1076)
..|+.+.+..
T Consensus 1332 lmEhlk~f~~ 1341 (1630)
T 1xi4_A 1332 MREHLELFWS 1341 (1630)
T ss_pred HHHHHHHHHH
Confidence 6666666553
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.82 E-value=8.3e-18 Score=202.59 Aligned_cols=438 Identities=10% Similarity=-0.004 Sum_probs=273.9
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHhcC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038364 432 SVCNCLISMYSRNNKLELATRVFDSMK---DHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHF 508 (1076)
Q Consensus 432 ~v~n~Li~~y~k~g~~~~A~~lf~~m~---~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~ 508 (1076)
..+..+...|.+.|++++|...|+++. ..+...|..+...|.+.|++++|++.|+++.+.+.. +..+|..+...+.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHH
Confidence 345556667777777777777777763 245667777888888888888888888888776544 6777888888888
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhCCCHHHH
Q 038364 509 THGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGL--DYDLYVGTSLMDMYVKNDCLQNA 586 (1076)
Q Consensus 509 ~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~--~~d~~v~~aLi~~y~k~g~~~~A 586 (1076)
..|++++|++.|+.+... |+... ..+..+...+....+...+..+++... ..........+..|....+.+.+
T Consensus 105 ~~g~~~~A~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLSLN---GDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHHHHhcC---CCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 888888888888633222 33211 112233334444556666665543210 11111123445556667777777
Q ss_pred HHHHhhcCCCCHh---HHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCcc-chhhhhhhhhhcCChhHHHH
Q 038364 587 QEVFDNMKNRNIV---AWNSLISGYCFK--------GLFVNAKKMLNQMEEEEIKPDLV-SWNSLVSGYSIWGQSKEALV 654 (1076)
Q Consensus 587 ~~lf~~m~~~d~~---~~n~lI~~~~~~--------g~~~~A~~lf~~M~~~g~~pd~~-t~~~Li~~y~k~g~~~~A~~ 654 (1076)
...+......+.. .+..+...+... |++++|+.+|+++.+. .|+.. .+..+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~--------------- 242 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENA--------------- 242 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHH---------------
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHH---------------
Confidence 7777666553332 233333222221 2455555555555433 12211 00000
Q ss_pred HHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCC
Q 038364 655 IIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGF 734 (1076)
Q Consensus 655 lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~ 734 (1076)
...|..+...+...|++++|.+.|++..+. .|+..++..+...+...|+++.|...+..+++..
T Consensus 243 -------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 306 (537)
T 3fp2_A 243 -------------ALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN- 306 (537)
T ss_dssp -------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-
T ss_pred -------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-
Confidence 123444444555555555666555555542 3444555555555666666666666666655532
Q ss_pred CCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 038364 735 IKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD-AITFTAL 810 (1076)
Q Consensus 735 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd-~~t~~~l 810 (1076)
..+..++..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|+..|+++.+. .|+ ...+..+
T Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l 384 (537)
T 3fp2_A 307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFF 384 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHH
Confidence 23456677788888888888888888887652 45678888889999999999999999998874 344 4577777
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCC----cccHHHHHHHHHhc----------CCHHHHHHHHHhC-C-CCCCHHH
Q 038364 811 LAACKNSGLVEEGWKYFDSMSTDYNIIPT----IEHYSCMVDLLGKA----------GYLDEAWDFIRTM-P-FKPDATI 874 (1076)
Q Consensus 811 l~a~~~~g~~~eA~~~~~~m~~~~g~~p~----~~~y~~li~~l~r~----------G~l~eA~~l~~~m-~-~~pd~~~ 874 (1076)
...+...|++++|.+.|+.+.+...-.++ ...+..+...|.+. |++++|.+.+++. . .+.+..+
T Consensus 385 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 464 (537)
T 3fp2_A 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQA 464 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHH
Confidence 88889999999999999887654211111 11244556777787 9999999999987 2 3345778
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHH
Q 038364 875 WGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYN 910 (1076)
Q Consensus 875 ~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~ 910 (1076)
|..+...+...|++++|...+++++++.|++.....
T Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 465 KIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999999999999999998866544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-15 Score=186.13 Aligned_cols=641 Identities=10% Similarity=0.081 Sum_probs=416.9
Q ss_pred hhhHHHHHHHccCChhhHHHHhhhcCC--C-----CcccHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCcc------
Q 038364 229 MVKSLIFHYLEFGDFTSAAKAFFLYFS--R-----SYADWSSFLEDYESFGGEVQELLEVWGELHGKGVIFRSR------ 295 (1076)
Q Consensus 229 ~~~~ll~~y~~~g~~~~A~~~f~~~~~--~-----~~~~wn~li~~~~~~g~~~~~al~lf~~m~~~g~~p~~~------ 295 (1076)
-...+.+.+-+.|-+..|.+.++.+.. | +...=..++.-+ ..=.. +.+++++++|...+++-|-.
T Consensus 609 d~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~l~~~f-g~l~~-~~s~~~l~~~l~~n~~qnlq~vvqva 686 (1630)
T 1xi4_A 609 DRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYF-GSLSV-EDSLECLRAMLSANIRQNLQICVQVA 686 (1630)
T ss_pred cHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHHHHHHH-hcCCH-HHHHHHHHHHHHHhHhhhhhhhhhHH
Confidence 345555666678888888888775521 1 122222233333 33334 78888888888765543321
Q ss_pred -------hHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhcCC-----------
Q 038364 296 -------ILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSD----------- 357 (1076)
Q Consensus 296 -------t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~----------- 357 (1076)
+-..+++.+-+.+..+.---..+.++ .+..|+.+....|.+.+|.|.+.+.+++-.+-.-
T Consensus 687 ~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv--~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk 764 (1630)
T 1xi4_A 687 SKYHEQLSTQSLIELFESFKSFEGLFYFLGSIV--NFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLK 764 (1630)
T ss_pred HHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhc--cccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHh
Confidence 11222222222222222122222222 2556889999999999999999998887655221
Q ss_pred ---CC----------------ChhhH------HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH-------------H
Q 038364 358 ---LE----------------DDLLW------NEIIMVKLRNEKWENAIKLFREMQFSSAKAISRT-------------I 399 (1076)
Q Consensus 358 ---~~----------------d~~s~------n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t-------------~ 399 (1076)
.+ |.+.| ...|.+|++.-++..+-.+...+..-+. +... .
T Consensus 765 ~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d~--~e~~ik~ll~~v~~~~~~ 842 (1630)
T 1xi4_A 765 EAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDC--SEDVIKNLILVVRGQFST 842 (1630)
T ss_pred hCCCCCCCCceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhhcCCC--CHHHHHHHHHHhccCCCH
Confidence 01 11111 2346666665555544444444333221 2222 2
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHH----------HHHHhcCCCChhH-----
Q 038364 400 VKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELAT----------RVFDSMKDHNLSS----- 464 (1076)
Q Consensus 400 ~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~----------~lf~~m~~~d~~s----- 464 (1076)
..|+..+-+.+++......++.-+..| ..|+.++|+|...|...++-.+.. -+=+-..++|...
T Consensus 843 ~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay 921 (1630)
T 1xi4_A 843 DELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAY 921 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHh
Confidence 233444445555555556666666777 458889999999988654322210 0000011222211
Q ss_pred -----HHHHHHHHHhCCChHH-HH-----------------------HHHHHHHh----CCCCCChhhHHHHHHHHHhcC
Q 038364 465 -----WNSMISSYTGLGYVDV-AW-----------------------SLFNKMNS----SRIQPDIITWNCLLSGHFTHG 511 (1076)
Q Consensus 465 -----~n~lI~~~~~~g~~~~-A~-----------------------~lf~~M~~----~g~~pd~~ty~~Li~~~~~~g 511 (1076)
-.-||....+++.+.. |. ++.++-.. ....|+ --...+.+|...|
T Consensus 922 ~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~Pe--eVs~~vKaf~~ag 999 (1630)
T 1xi4_A 922 ERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPE--EVSVTVKAFMTAD 999 (1630)
T ss_pred cccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHH--HhHHHHHHHHhCC
Confidence 1223333333333322 11 11111111 112222 3345677888999
Q ss_pred ChhhHHHHHHHHHhcCC--CCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHH
Q 038364 512 SYQNVLTLLRGMQSLGF--RPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEV 589 (1076)
Q Consensus 512 ~~~~Al~l~~~m~~~gi--~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~l 589 (1076)
.+.+|++++++....+- .-+...-+.++.+..+. +...+.+.....- ......+...+...|.+++|..+
T Consensus 1000 lp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-------~~d~~eIA~Iai~lglyEEAf~I 1071 (1630)
T 1xi4_A 1000 LPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-------NYDAPDIANIAISNELFEEAFAI 1071 (1630)
T ss_pred CHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-------hccHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999884421 00111222233333333 5555555544433 11234466778889999999999
Q ss_pred HhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchH
Q 038364 590 FDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVV 669 (1076)
Q Consensus 590 f~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ 669 (1076)
|++.. ......+.++. ..+++++|.++.++.. +..+|..+..++.+.|++++|.+.|.+. .|..
T Consensus 1072 YkKa~-~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~s 1135 (1630)
T 1xi4_A 1072 FRKFD-VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPS 1135 (1630)
T ss_pred HHHcC-CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChH
Confidence 99975 33333344433 7788999999998763 5778999999999999999999999765 4788
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 038364 670 TWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYS 749 (1076)
Q Consensus 670 ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~ 749 (1076)
.|..++..+.+.|++++|.+++....+.. ++....+.+..+|++.++++....+. + .++...+..+.+.|.
T Consensus 1136 ay~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le 1206 (1630)
T 1xi4_A 1136 SYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCY 1206 (1630)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHH
Confidence 89999999999999999999999877643 44444456888999998887544442 2 345566677999999
Q ss_pred hcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038364 750 KSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDS 829 (1076)
Q Consensus 750 k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~ 829 (1076)
..|++++|...|... ..|..+...|.+.|++++|++.+++. -+..+|..+-.+|...|.+..|......
T Consensus 1207 ~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~ 1275 (1630)
T 1xi4_A 1207 DEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH 1275 (1630)
T ss_pred hcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 999999999999985 48999999999999999999999987 3568999999999999999999886543
Q ss_pred hhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHc--CCchHHHHHHHHHhcCCC--
Q 038364 830 MSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD-ATIWGALLGSCRIH--GHLEYAEIASRRLFKLEP-- 903 (1076)
Q Consensus 830 m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd-~~~~~~Ll~a~~~~--g~~e~A~~~~~~l~~l~P-- 903 (1076)
+..+++.+..++..|.+.|.++||+.+++.. +.+|. ...|.-|...+.+. ++..++.+.|..-.++.|
T Consensus 1276 ------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~ 1349 (1630)
T 1xi4_A 1276 ------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL 1349 (1630)
T ss_pred ------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHh
Confidence 3345777889999999999999999999875 44443 33676666666554 677888888888888777
Q ss_pred ---CCchhHHHHHHHHHHcCChHHHHHH
Q 038364 904 ---CNSANYNLMMNLLAMSNRWEDVERL 928 (1076)
Q Consensus 904 ---~~~~~y~~L~~~y~~~G~~~eA~~~ 928 (1076)
++...|.-++.+|.+.|+|+.|...
T Consensus 1350 r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1350 RAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 6778899999999999999999864
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.82 E-value=7e-18 Score=198.46 Aligned_cols=330 Identities=9% Similarity=0.017 Sum_probs=219.5
Q ss_pred CcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHH
Q 038364 531 NGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISG 607 (1076)
Q Consensus 531 d~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~ 607 (1076)
+...+..+...+.+.|++++|..++..+++... .+..++..+..+|.+.|++++|...|+++.+ .+..+|..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 345677788889999999999999999998743 3688899999999999999999999998764 467899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCc----cchhhhhhh------------hhhcCChhHHHHHHHHhHhcCCCCchHHH
Q 038364 608 YCFKGLFVNAKKMLNQMEEEEIKPDL----VSWNSLVSG------------YSIWGQSKEALVIIHHMKNSGIYPNVVTW 671 (1076)
Q Consensus 608 ~~~~g~~~~A~~lf~~M~~~g~~pd~----~t~~~Li~~------------y~k~g~~~~A~~lf~~m~~~gi~pd~~ty 671 (1076)
|.+.|++++|.+.|+++.+.. |+. ..+..+... |.+.|++++|...|+++.+.. +.+...|
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 999999999999999998753 443 556656444 555566666666666655431 2244555
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhc
Q 038364 672 TSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKS 751 (1076)
Q Consensus 672 ~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~ 751 (1076)
..+...|.+.|++++|++.|+++.+. . ..+..++..+...|.+.
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~----------------------------------~~~~~~~~~l~~~~~~~ 224 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKL--K----------------------------------NDNTEAFYKISTLYYQL 224 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHH--H----------------------------------CSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--C----------------------------------CCCHHHHHHHHHHHHHc
Confidence 55555555555555555555555432 1 12334444455555555
Q ss_pred CCHHHHHHHHHhcCC---CChHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHH
Q 038364 752 GNLKSAREVFRKSAN---KTLASWNCM------------IMGFAIYGNGKEAILLFHELLETGFQPD-----AITFTALL 811 (1076)
Q Consensus 752 G~~~~A~~vf~~m~~---~d~~s~n~l------------i~~~~~~g~~~~Al~l~~~M~~~g~~Pd-----~~t~~~ll 811 (1076)
|++++|.+.|+++.+ .+...|..+ ...+...|++++|+..|+++.+ ..|+ ...+..+.
T Consensus 225 g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~ 302 (450)
T 2y4t_A 225 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERIC 302 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHH
Confidence 555555555544431 122233322 6667777777777777777776 3454 23556666
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-------
Q 038364 812 AACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD-ATIWGALLGS------- 881 (1076)
Q Consensus 812 ~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd-~~~~~~Ll~a------- 881 (1076)
..+.+.|++++|.++++.+.+. .| +...|..+..+|.+.|++++|.+.++++ ...|+ ..+|..+..+
T Consensus 303 ~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 379 (450)
T 2y4t_A 303 HCFSKDEKPVEAIRVCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS 379 (450)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcc
Confidence 6677777777777777776543 23 3566777777777777777777777765 34443 4455555422
Q ss_pred -----HHHcC-----CchHHHHHHHH-HhcCCCCC
Q 038364 882 -----CRIHG-----HLEYAEIASRR-LFKLEPCN 905 (1076)
Q Consensus 882 -----~~~~g-----~~e~A~~~~~~-l~~l~P~~ 905 (1076)
|...| +.+++.+.+++ .++..|++
T Consensus 380 ~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 380 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred cchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 33334 56777888886 67788875
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.1e-16 Score=173.51 Aligned_cols=310 Identities=11% Similarity=0.057 Sum_probs=184.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHH
Q 038364 599 VAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGS 678 (1076)
Q Consensus 599 ~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~ 678 (1076)
..|..+...+.+.|++++|++.|+++.+.. +.+..++..+...|...|++++|...|+++.+.. +.+...|..+...|
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 344444455555555555555555554432 1123444555555555555555555555554431 11334555555555
Q ss_pred hcCCChhHHHHHHHHHhhcCCCC---C-hhhHHHH------------HHHHhcCCCchhHHHHHHHHHHcCCCCChhhHH
Q 038364 679 LQNENYRESLKFFIQMQQEDIKP---N-STTMSSL------------LQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVAT 742 (1076)
Q Consensus 679 ~~~g~~~eAl~l~~~m~~~gi~p---d-~~t~~~l------------L~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~ 742 (1076)
.+.|++++|.+.|+++.+. .| + ...+..+ ...+...|++++|...+..+.+. .+.+...+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~ 158 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV-CVWDAELRE 158 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCchHHHH
Confidence 5556666666655555542 33 1 1222222 34555666666666666666654 223456666
Q ss_pred HHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HH----------
Q 038364 743 GLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAIT-FT---------- 808 (1076)
Q Consensus 743 ~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t-~~---------- 808 (1076)
.+...|.+.|++++|.+.+++..+ .+...|..+...|...|++++|+..|++..+ ..|+... +.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCccchHHHHHHHHHHHHHH
Confidence 777777777777777777776553 3456777777777777888888887777776 3344322 21
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCc-----ccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 038364 809 --ALLAACKNSGLVEEGWKYFDSMSTDYNIIPTI-----EHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALL 879 (1076)
Q Consensus 809 --~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~-----~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll 879 (1076)
.+...+...|++++|.+.++++.+. .|+. ..+..+...|.+.|++++|.+.+++. ...| +..+|..+.
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 313 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 2244466777777777777777654 2331 22445667777777777777777765 2233 566777777
Q ss_pred HHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 038364 880 GSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAM 918 (1076)
Q Consensus 880 ~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~ 918 (1076)
..+...|++++|...++++++++|++...+..+..++..
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 777777788888888888777777777666666665543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=181.83 Aligned_cols=380 Identities=14% Similarity=0.123 Sum_probs=175.1
Q ss_pred hcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHH
Q 038364 340 GKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIH 419 (1076)
Q Consensus 340 ~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~ 419 (1076)
-++|++++|.+.+++++. ++ +|..|..++.+.|++++|++.|.+ .+|..+|..++.+|...|++++|...+
T Consensus 14 ~~~~~ld~A~~fae~~~~-~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE-PA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC-hH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 378999999999999977 54 999999999999999999999975 367889999999999999999999988
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhh
Q 038364 420 GYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIIT 499 (1076)
Q Consensus 420 ~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t 499 (1076)
....+. .+++.+.+.|+.+|.|+|+++++.++|+. |+..+|+.+...|...|++++|..+|..+ ..
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n 150 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 150 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TC
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence 888774 45678899999999999999999988864 77789999999999999999999999987 48
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 038364 500 WNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVK 579 (1076)
Q Consensus 500 y~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k 579 (1076)
|..++.++.+.|++++|.+.++++ .+..||..++.+|...|+++.|...... +..++.-...++..|.+
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek 219 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQD 219 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHH
Confidence 999999999999999999999999 4778999999999999999999543332 22333335578999999
Q ss_pred CCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCC------CccchhhhhhhhhhcCC
Q 038364 580 NDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFK--GLFVNAKKMLNQMEEEEIKP------DLVSWNSLVSGYSIWGQ 648 (1076)
Q Consensus 580 ~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~--g~~~~A~~lf~~M~~~g~~p------d~~t~~~Li~~y~k~g~ 648 (1076)
.|.+++|..+++.... .....|+-|--.|++- ++..+.+++|..- -.+.| +...|..+...|.+.++
T Consensus 220 ~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e 297 (449)
T 1b89_A 220 RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEE 297 (449)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhhch
Confidence 9999999999987764 4567888888888875 4556666666531 12222 56788899999999999
Q ss_pred hhHHHHHHHHhHhc-CC-------------CCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHh
Q 038364 649 SKEALVIIHHMKNS-GI-------------YPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCG 714 (1076)
Q Consensus 649 ~~~A~~lf~~m~~~-gi-------------~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~ 714 (1076)
++.|... |.++ .. ..+...|-..|.-|. +...+++.-+-......+. .+.++.-+.
T Consensus 298 ~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld-----~~r~v~~~~ 367 (449)
T 1b89_A 298 YDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLD-----HTRAVNYFS 367 (449)
T ss_dssp HHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCC-----HHHHHHHHH
T ss_pred HHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccC-----cHHHHHHHH
Confidence 9988763 3332 01 123444444444444 2222222222211111111 123333445
Q ss_pred cCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCC
Q 038364 715 GLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKT 768 (1076)
Q Consensus 715 ~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d 768 (1076)
+.|.+...+..+..+... .+..+-.+|-+.|....+++.-+.-.+.-..-|
T Consensus 368 ~~~~l~l~~~yl~~v~~~---n~~~vnealn~l~ieeed~~~lr~si~~~~nfd 418 (449)
T 1b89_A 368 KVKQLPLVKPYLRSVQNH---NNKSVNESLNNLFITEEDYQALRTSIDAYDNFD 418 (449)
T ss_dssp HTTCTTTTHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHCCCSC
T ss_pred HcCCcHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCcC
Confidence 555555555555444432 234444556666666666665555554443333
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.2e-15 Score=167.99 Aligned_cols=294 Identities=12% Similarity=-0.004 Sum_probs=244.7
Q ss_pred ccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCC-ChhhHHHHHH
Q 038364 633 LVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKP-NSTTMSSLLQ 711 (1076)
Q Consensus 633 ~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~p-d~~t~~~lL~ 711 (1076)
...+..+...+.+.|++++|...|+++.+.. +.+...|..+...+.+.|++++|++.|+++.+. .| +...+..+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHHH
Confidence 3455667788899999999999999998752 235788999999999999999999999999874 34 5678888889
Q ss_pred HHhcCCCchhHHHHHHHHHHcCCCC----ChhhHHHH------------HHHHhhcCCHHHHHHHHHhcC---CCChHHH
Q 038364 712 TCGGLGLLQNGKEIHCLCLKNGFIK----DAYVATGL------------IDMYSKSGNLKSAREVFRKSA---NKTLASW 772 (1076)
Q Consensus 712 a~~~~g~~~~a~~i~~~~~~~g~~~----d~~~~~~L------------i~~y~k~G~~~~A~~vf~~m~---~~d~~s~ 772 (1076)
.+...|++++|...+..+.+. .| +...+..+ ...|...|++++|.+.|+++. ..+...|
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 157 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELR 157 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 999999999999999999884 34 34444444 688999999999999999865 3467789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCc-ccHH-------
Q 038364 773 NCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTI-EHYS------- 844 (1076)
Q Consensus 773 n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~-~~y~------- 844 (1076)
..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|.+.|+...+. .|+. ..+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKK 233 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHH
Confidence 999999999999999999999999842 335567888888899999999999999998764 3442 2222
Q ss_pred -----HHHHHHHhcCCHHHHHHHHHhC-CCCCC-HH----HHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHH
Q 038364 845 -----CMVDLLGKAGYLDEAWDFIRTM-PFKPD-AT----IWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMM 913 (1076)
Q Consensus 845 -----~li~~l~r~G~l~eA~~l~~~m-~~~pd-~~----~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~ 913 (1076)
.+...+.+.|++++|.+.+++. ...|+ .. .|..+...+...|++++|...++++++++|+++..+..++
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 313 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 3367799999999999999986 23343 32 3555778899999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhC
Q 038364 914 NLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 914 ~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
.+|.+.|++++|.+.+++..+.
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999998653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-15 Score=174.12 Aligned_cols=292 Identities=11% Similarity=0.080 Sum_probs=122.0
Q ss_pred HccCChhhHHHHhhhcCCCCcccHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhhHHHHH
Q 038364 238 LEFGDFTSAAKAFFLYFSRSYADWSSFLEDYESFGGEVQELLEVWGELHGKGVIFRSRILTIILKLCTKLMAFWLGVEVH 317 (1076)
Q Consensus 238 ~~~g~~~~A~~~f~~~~~~~~~~wn~li~~~~~~g~~~~~al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 317 (1076)
-++|++++|...|+++++|+ .|+.+..++.+.|++ ++|++.|.+. +|..+|..++.+|...|++++|...+
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~-~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMV-KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCH-HHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 37889999999999997775 999999999999999 9999999763 68889999999999999999999988
Q ss_pred HHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH
Q 038364 318 ASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISR 397 (1076)
Q Consensus 318 ~~~~~~g~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~ 397 (1076)
..+.+. .+++.+.+.|+.+|.|+|+++++.++|+. ++..+|+.+...|...|++++|..+|..+ .
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~----pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~ 149 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFING----PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 149 (449)
T ss_dssp --------------------------CHHHHTTTTTC----C----------------CTTTHHHHHHHT---------T
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------h
Confidence 888774 46688999999999999999999988864 66679999999999999999999999977 2
Q ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCC
Q 038364 398 TIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGY 477 (1076)
Q Consensus 398 t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~ 477 (1076)
.|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .+..-...++..|.+.|+
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGY 222 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCC
Confidence 6777777777888877777777665 367777777777777777777766655543 333334457777777777
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--CChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHH
Q 038364 478 VDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTH--GSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESH 555 (1076)
Q Consensus 478 ~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~--g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~ 555 (1076)
+++|+.+++...... +--...|+-|--.|++- ++..+.+++|. ...-...+|++|.+
T Consensus 223 ~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---------~~ini~k~~~~~~~----------- 281 (449)
T 1b89_A 223 FEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---------SRVNIPKVLRAAEQ----------- 281 (449)
T ss_dssp HHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---------TTSCHHHHHHHHHT-----------
T ss_pred HHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---------HHhcCcHHHHHHHH-----------
Confidence 777777777766544 22455666665555554 24444444442 22334556666653
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhh
Q 038364 556 GYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDN 592 (1076)
Q Consensus 556 ~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~ 592 (1076)
..+|..++-.|.+-++++.|....-+
T Consensus 282 -----------~~~w~e~~~ly~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 282 -----------AHLWAELVFLYDKYEEYDNAIITMMN 307 (449)
T ss_dssp -----------TTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHhhchHHHHHHHHHh
Confidence 34567788888888888888765433
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.8e-15 Score=163.99 Aligned_cols=286 Identities=12% Similarity=0.073 Sum_probs=186.6
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHH
Q 038364 597 NIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLIS 676 (1076)
Q Consensus 597 d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~ 676 (1076)
+...+..+...+...|++++|+++|+++.+.. +.+...+..++..+.+.|++++|..+|+++.+.. +.+...|..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 34445555555555566666666666655442 1223333444555555555555555555555421 123344444555
Q ss_pred HHhcCC-ChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHH
Q 038364 677 GSLQNE-NYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLK 755 (1076)
Q Consensus 677 ~~~~~g-~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~ 755 (1076)
.+...| ++++|.+.|++.. +.. +.+...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~-----------------------------------~~~-~~~~~~~~~l~~~~~~~~~~~ 142 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKAT-----------------------------------TLE-KTYGPAWIAYGHSFAVESEHD 142 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHH-----------------------------------TTC-TTCTHHHHHHHHHHHHHTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHH-----------------------------------HhC-CccHHHHHHHHHHHHHccCHH
Confidence 555555 4555555555544 321 123445666677777777777
Q ss_pred HHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 038364 756 SAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMST 832 (1076)
Q Consensus 756 ~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~ 832 (1076)
+|.+.|++..+ .+...|..+...|...|++++|++.|++..+.. +.+...+..+...+...|++++|.++++++.+
T Consensus 143 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 143 QAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 77777766542 345666677777888888888888888877632 23345677777778888888888888877765
Q ss_pred cCC-------CCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCC
Q 038364 833 DYN-------IIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEP 903 (1076)
Q Consensus 833 ~~g-------~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P 903 (1076)
... .......+..+...|.+.|++++|.+.+++. . .+.+..+|..+...+...|++++|...++++++++|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 311 1233568888899999999999999988886 2 234567888999999999999999999999999999
Q ss_pred CCchhHHHHHHHHH-HcCC
Q 038364 904 CNSANYNLMMNLLA-MSNR 921 (1076)
Q Consensus 904 ~~~~~y~~L~~~y~-~~G~ 921 (1076)
+++..+..++..|. ..|+
T Consensus 302 ~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 302 DDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp CCHHHHHHHHHHHHTTTTC
T ss_pred CchHHHHHHHHHHHHHhCc
Confidence 99999999999884 4454
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-13 Score=167.28 Aligned_cols=209 Identities=7% Similarity=0.016 Sum_probs=164.8
Q ss_pred hHHHHHHHHHHcCCCCChhhHHHHHHHHhh-------cCCHH-------HHHHHHHhcCC---C-ChHHHHHHHHHHHHc
Q 038364 721 NGKEIHCLCLKNGFIKDAYVATGLIDMYSK-------SGNLK-------SAREVFRKSAN---K-TLASWNCMIMGFAIY 782 (1076)
Q Consensus 721 ~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k-------~G~~~-------~A~~vf~~m~~---~-d~~s~n~li~~~~~~ 782 (1076)
.+..+++.+++. ...+..+|..++..+.+ .|+++ +|.++|++..+ | +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 556677777774 33467788888888875 68877 89999998764 3 567899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHH-HHhcCCHHH
Q 038364 783 GNGKEAILLFHELLETGFQPDA--ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDL-LGKAGYLDE 858 (1076)
Q Consensus 783 g~~~~Al~l~~~M~~~g~~Pd~--~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~-l~r~G~l~e 858 (1076)
|+.++|..+|+++.+ +.|+. ..|......+.+.|++++|+++|++..+. .|. ...|...+.+ +...|+.++
T Consensus 335 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhH
Confidence 999999999999998 56753 47888888888899999999999998764 333 2333332222 346899999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCch----hHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 859 AWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSA----NYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 859 A~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~----~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
|.++|++. ...| +...|..++......|+.+.|..+++++++..|.++. .+...+......|+.+++.++.+++
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999876 2334 5789999999999999999999999999998776655 6767788888899999999999988
Q ss_pred HhC
Q 038364 933 DEV 935 (1076)
Q Consensus 933 ~~~ 935 (1076)
.+.
T Consensus 490 ~~~ 492 (530)
T 2ooe_A 490 FTA 492 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-17 Score=202.02 Aligned_cols=115 Identities=16% Similarity=0.218 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHH---HcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHH
Q 038364 599 VAWNSLISGYCFKGLFVNAKKMLNQME---EEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLI 675 (1076)
Q Consensus 599 ~~~n~lI~~~~~~g~~~~A~~lf~~M~---~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI 675 (1076)
.+||+||++||+.|+.++|.++|.+|. ..|+.||.+|||+||++|++.|++++|.++|++|.+.|+.||++|||+||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 456666666666666666666665554 23566666666666666666666666666666666666666666666666
Q ss_pred HHHhcCCCh-hHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 038364 676 SGSLQNENY-RESLKFFIQMQQEDIKPNSTTMSSLLQTC 713 (1076)
Q Consensus 676 ~~~~~~g~~-~eAl~l~~~m~~~gi~pd~~t~~~lL~a~ 713 (1076)
+++++.|+. ++|.++|++|.+.|+.||.+||++++.++
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 666666653 55666666666666666666666665544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-14 Score=162.24 Aligned_cols=264 Identities=12% Similarity=0.048 Sum_probs=214.3
Q ss_pred CCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHH
Q 038364 665 YPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGL 744 (1076)
Q Consensus 665 ~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~L 744 (1076)
..+...+..+...+...|++++|+++|+++.+.. +.+...+..+..++...|++++|...+..+++. .+.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDL-YPSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh-CcCCHHHHHHH
Confidence 3455556666677777777777777777776532 223445555666677778888888887777774 23356778889
Q ss_pred HHHHhhcC-CHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 038364 745 IDMYSKSG-NLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD-AITFTALLAACKNSGL 819 (1076)
Q Consensus 745 i~~y~k~G-~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd-~~t~~~ll~a~~~~g~ 819 (1076)
...|...| ++++|.+.|++..+ .+...|..+...+...|++++|+..|+++.+. .|+ ...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhh
Confidence 99999999 99999999998764 35678999999999999999999999999984 344 4567778888999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCC-C----------CCCHHHHHHHHHHHHHcCCc
Q 038364 820 VEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMP-F----------KPDATIWGALLGSCRIHGHL 888 (1076)
Q Consensus 820 ~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~-~----------~pd~~~~~~Ll~a~~~~g~~ 888 (1076)
+++|.++++++.+. .+.+...+..+...|.+.|++++|.+.+++.. . +.+..+|..+...+...|++
T Consensus 175 ~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 175 SKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 99999999999753 23346788999999999999999999998762 1 34467899999999999999
Q ss_pred hHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 889 EYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 889 e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
++|+..+++++++.|+++..+..++.+|.+.|++++|.+.+++..+
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999998754
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.7e-17 Score=197.40 Aligned_cols=150 Identities=15% Similarity=0.193 Sum_probs=126.2
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHhc-------CCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhh
Q 038364 427 LESNLSVCNCLISMYSRNNKLELATRVFDSM-------KDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIIT 499 (1076)
Q Consensus 427 ~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m-------~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t 499 (1076)
...-..+||+||++|||+|++++|.++|++| ..||++|||+||.||++.|++++|.++|++|.+.|+.||++|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 3344578999999999999999999999776 368999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCh-hhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCc------hhHHHH
Q 038364 500 WNCLLSGHFTHGSY-QNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYD------LYVGTS 572 (1076)
Q Consensus 500 y~~Li~~~~~~g~~-~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d------~~v~~a 572 (1076)
||+||.++++.|+. ++|.++|++|.+.|+.||.+||+++++++.+.+-++..+.+ ..++.|+ +.+..-
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv-----~P~f~p~~~~~~~~~t~~L 277 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV-----KPTFSLPPQLPPPVNTSKL 277 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG-----CCCCCCCCCCCCCCCCCTT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh-----CcccCCCCCCcccccchHH
Confidence 99999999999985 78999999999999999999999998776655433333222 2344444 455666
Q ss_pred HHHHHHhCC
Q 038364 573 LMDMYVKND 581 (1076)
Q Consensus 573 Li~~y~k~g 581 (1076)
|.+.|.+.+
T Consensus 278 L~dl~s~d~ 286 (1134)
T 3spa_A 278 LRDVYAKDG 286 (1134)
T ss_dssp THHHHCCCS
T ss_pred HHHHHccCC
Confidence 788888766
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.5e-13 Score=160.86 Aligned_cols=352 Identities=13% Similarity=-0.033 Sum_probs=238.5
Q ss_pred CchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----CCCHHHHHHHHhhcCC-CCHhHHHHHHHHHHh----cCChHH
Q 038364 546 RLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVK----NDCLQNAQEVFDNMKN-RNIVAWNSLISGYCF----KGLFVN 616 (1076)
Q Consensus 546 g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k----~g~~~~A~~lf~~m~~-~d~~~~n~lI~~~~~----~g~~~~ 616 (1076)
+++++|...+....+.| +...+..|-.+|.. .++.++|.+.|++..+ .+...+..|-..|.. .+++++
T Consensus 57 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~ 133 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAE 133 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 33444444444433332 23344445555555 5566666666655433 344555555555555 556666
Q ss_pred HHHHHHHHHHcCCCCCccchhhhhhhhhh----cCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhc----CCChhHHH
Q 038364 617 AKKMLNQMEEEEIKPDLVSWNSLVSGYSI----WGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQ----NENYRESL 688 (1076)
Q Consensus 617 A~~lf~~M~~~g~~pd~~t~~~Li~~y~k----~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~----~g~~~eAl 688 (1076)
|++.|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +...+..+...|.+ .++.++|+
T Consensus 134 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 207 (490)
T 2xm6_A 134 SVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISA 207 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHH
Confidence 666666666554 34455555555555 567777777777766643 55666666666666 67777777
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHhc----CCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhh----cCCHHHHHHH
Q 038364 689 KFFIQMQQEDIKPNSTTMSSLLQTCGG----LGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSK----SGNLKSAREV 760 (1076)
Q Consensus 689 ~l~~~m~~~gi~pd~~t~~~lL~a~~~----~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k----~G~~~~A~~v 760 (1076)
+.|++..+.| +...+..+...+.. .++.++|...+....+.| +...+..|..+|.. .++.++|.+.
T Consensus 208 ~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~ 281 (490)
T 2xm6_A 208 QWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEW 281 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHH
Confidence 7777776543 34445555555543 667777777777776653 34556667777777 8889999999
Q ss_pred HHhcCC-CChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhh
Q 038364 761 FRKSAN-KTLASWNCMIMGFAIY-----GNGKEAILLFHELLETGFQPDAITFTALLAACKNSG---LVEEGWKYFDSMS 831 (1076)
Q Consensus 761 f~~m~~-~d~~s~n~li~~~~~~-----g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g---~~~eA~~~~~~m~ 831 (1076)
|++..+ .+...+..+...|... ++.++|+.+|++..+.| +...+..+-..+...| +.++|.++|++..
T Consensus 282 ~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 282 YRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 987765 4566777788888877 89999999999998865 3445555666666656 7889999999887
Q ss_pred hcCCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHhcCCC
Q 038364 832 TDYNIIPTIEHYSCMVDLLGK----AGYLDEAWDFIRTMPFKPDATIWGALLGSCRI----HGHLEYAEIASRRLFKLEP 903 (1076)
Q Consensus 832 ~~~g~~p~~~~y~~li~~l~r----~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~----~g~~e~A~~~~~~l~~l~P 903 (1076)
+. .++..+..+..+|.. .++.++|.+++++.-...+...+..|...+.. .+|.++|...++++.+.+|
T Consensus 359 ~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 359 AK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 64 356788888899988 89999999999887433467788888888888 8999999999999999885
Q ss_pred C---CchhHHHHHHHHHHc
Q 038364 904 C---NSANYNLMMNLLAMS 919 (1076)
Q Consensus 904 ~---~~~~y~~L~~~y~~~ 919 (1076)
+ ++.....|+.++.+.
T Consensus 435 ~~~~~~~a~~~l~~~~~~~ 453 (490)
T 2xm6_A 435 NLFGTENRNITEKKLTAKQ 453 (490)
T ss_dssp CHHHHHHHHHHHTTSCHHH
T ss_pred CCcCCHHHHHHHHhcCHhH
Confidence 4 666777777766543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.3e-13 Score=162.81 Aligned_cols=411 Identities=13% Similarity=0.112 Sum_probs=256.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 038364 430 NLSVCNCLISMYSRNNKLELATRVFDSMKD--H-NLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSG 506 (1076)
Q Consensus 430 d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~--~-d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~ 506 (1076)
|...|..++. +.+.|+++.|+.+|+++.+ | +...|...+..+.+.|++++|..+|++..... |+...|...+..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHH
Confidence 5666777776 4667777777777777643 2 44467777777777777777777777776653 455566665542
Q ss_pred H-HhcCChhhHHH----HHHHHHh-cCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-
Q 038364 507 H-FTHGSYQNVLT----LLRGMQS-LGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVK- 579 (1076)
Q Consensus 507 ~-~~~g~~~~Al~----l~~~m~~-~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k- 579 (1076)
. ...|+.++|.+ +|++... .|..|+ +..+|...+....+
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~----------------------------------~~~~w~~~~~~~~~~ 134 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIM----------------------------------SYQIWVDYINFLKGV 134 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTT----------------------------------CHHHHHHHHHHHHHS
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcc----------------------------------cHHHHHHHHHHHhcC
Confidence 2 34455555544 3433332 132222 22334444433332
Q ss_pred --------CCCHHHHHHHHhhcCC-CC---HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcC
Q 038364 580 --------NDCLQNAQEVFDNMKN-RN---IVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWG 647 (1076)
Q Consensus 580 --------~g~~~~A~~lf~~m~~-~d---~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g 647 (1076)
.|+++.|+.+|++... |+ ...|..........|. ..+. .++. .+.+
T Consensus 135 ~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~-------------------~~l~--~~~~ 192 (530)
T 2ooe_A 135 EAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI-HLAK-------------------KMIE--DRSR 192 (530)
T ss_dssp CCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHH-------------------HHHH--TTHH
T ss_pred CCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch-hHHH-------------------HHHH--HhhH
Confidence 4566666666665543 21 1122221111000000 0000 0000 0123
Q ss_pred ChhHHHHHHHHhH------hcC---CCCc--------hHHHHHHHHHHhcC----CCh----hHHHHHHHHHhhcCCCCC
Q 038364 648 QSKEALVIIHHMK------NSG---IYPN--------VVTWTSLISGSLQN----ENY----RESLKFFIQMQQEDIKPN 702 (1076)
Q Consensus 648 ~~~~A~~lf~~m~------~~g---i~pd--------~~ty~~LI~~~~~~----g~~----~eAl~l~~~m~~~gi~pd 702 (1076)
+++.|..++..+. +.. +.|+ ...|...+.-...+ ++. ++|..+|++.... .+-+
T Consensus 193 ~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~ 271 (530)
T 2ooe_A 193 DYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHH 271 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTC
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCC
Confidence 3444544444321 110 1222 24555555333222 222 3677788887763 2234
Q ss_pred hhhHHHHHHHHhc-------CCCch-------hHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC--
Q 038364 703 STTMSSLLQTCGG-------LGLLQ-------NGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN-- 766 (1076)
Q Consensus 703 ~~t~~~lL~a~~~-------~g~~~-------~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-- 766 (1076)
...|......+.. .|+++ +|..+++..++.-.+.+...+..++..+.+.|++++|.++|++..+
T Consensus 272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~ 351 (530)
T 2ooe_A 272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE 351 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc
Confidence 5667666666654 68877 7888888887632334578888999999999999999999997653
Q ss_pred C-Ch-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHhcCCHHHHHHHHHHhhhcCCCCCCccc
Q 038364 767 K-TL-ASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD-AITFTALLAA-CKNSGLVEEGWKYFDSMSTDYNIIPTIEH 842 (1076)
Q Consensus 767 ~-d~-~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd-~~t~~~ll~a-~~~~g~~~eA~~~~~~m~~~~g~~p~~~~ 842 (1076)
+ +. ..|..++..+.+.|+.++|.++|++..+. .|+ ...+...... +...|+.++|..+|+...+.. +.++..
T Consensus 352 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~ 427 (530)
T 2ooe_A 352 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEY 427 (530)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHH
T ss_pred ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHH
Confidence 3 33 48999999999999999999999999874 343 2233222222 336899999999999987652 224678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC
Q 038364 843 YSCMVDLLGKAGYLDEAWDFIRTM----PFKPD--ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC 904 (1076)
Q Consensus 843 y~~li~~l~r~G~l~eA~~l~~~m----~~~pd--~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~ 904 (1076)
|..+++.+.+.|+.++|..+|++. +..|+ ...|...+.-...+|+.+.+..+.+++.+..|+
T Consensus 428 ~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 428 VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 999999999999999999999986 23333 558999999999999999999999999998885
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.63 E-value=5.2e-15 Score=168.66 Aligned_cols=300 Identities=13% Similarity=-0.005 Sum_probs=183.1
Q ss_pred HHHhcCChHHHHH-HHHHHHHcCC-CC--CccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCC
Q 038364 607 GYCFKGLFVNAKK-MLNQMEEEEI-KP--DLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNE 682 (1076)
Q Consensus 607 ~~~~~g~~~~A~~-lf~~M~~~g~-~p--d~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g 682 (1076)
.+...|++++|++ .|++...... .| +...+..+...|.+.|++++|...|+++.+.. +.+...|..+...|.+.|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3444555666655 5554332210 01 23344555555556666666666666655431 223445555555555556
Q ss_pred ChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCCh-hhHHHHHHHHhhcCCHHHHHHHH
Q 038364 683 NYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDA-YVATGLIDMYSKSGNLKSAREVF 761 (1076)
Q Consensus 683 ~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~-~~~~~Li~~y~k~G~~~~A~~vf 761 (1076)
++++|++.|+++.+.. +.+..++..+...+...|++++|...+..+++.. |+. ..+..+ +.....
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~-------~~~~~~---- 178 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPA-------EEGAGG---- 178 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC-------------------
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH-------HHHhhh----
Confidence 6666665555555431 1133344444444444444444444444444421 111 000000 000000
Q ss_pred HhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC
Q 038364 762 RKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD---AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIP 838 (1076)
Q Consensus 762 ~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd---~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p 838 (1076)
......+.. +..+...|++++|+..|+++.+. .|+ ..++..+...+...|++++|.+.|+++.+. .|
T Consensus 179 ----~~~~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~ 248 (368)
T 1fch_A 179 ----AGLGPSKRI-LGSLLSDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RP 248 (368)
T ss_dssp -----------CT-THHHHHHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT
T ss_pred ----hcccHHHHH-HHHHhhcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---Cc
Confidence 000001112 33333888999999999999873 454 678888888899999999999999998764 34
Q ss_pred -CcccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC----------
Q 038364 839 -TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN---------- 905 (1076)
Q Consensus 839 -~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~---------- 905 (1076)
+...|..++..|.+.|++++|.+.++++ .. +.+..+|..+...+...|++++|...+++++++.|++
T Consensus 249 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 249 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 4678889999999999999999999886 23 3457789999999999999999999999999998887
Q ss_pred -chhHHHHHHHHHHcCChHHHHHHHHH
Q 038364 906 -SANYNLMMNLLAMSNRWEDVERLRHS 931 (1076)
Q Consensus 906 -~~~y~~L~~~y~~~G~~~eA~~~~~~ 931 (1076)
...|..++.+|...|++++|..+.++
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 78899999999999999999988764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-12 Score=156.67 Aligned_cols=350 Identities=12% Similarity=0.017 Sum_probs=294.2
Q ss_pred chhHHHHHHHHHHh----CCCHHHHHHHHhhcCC-CCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCccch
Q 038364 566 DLYVGTSLMDMYVK----NDCLQNAQEVFDNMKN-RNIVAWNSLISGYCF----KGLFVNAKKMLNQMEEEEIKPDLVSW 636 (1076)
Q Consensus 566 d~~v~~aLi~~y~k----~g~~~~A~~lf~~m~~-~d~~~~n~lI~~~~~----~g~~~~A~~lf~~M~~~g~~pd~~t~ 636 (1076)
+......|-.+|.. .+++++|...|++..+ .+...+..|-..|.. .++.++|++.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 55667777788888 8999999999987654 577888889999998 899999999999998875 56677
Q ss_pred hhhhhhhhh----cCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhc----CCChhHHHHHHHHHhhcCCCCChhhHHH
Q 038364 637 NSLVSGYSI----WGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQ----NENYRESLKFFIQMQQEDIKPNSTTMSS 708 (1076)
Q Consensus 637 ~~Li~~y~k----~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~----~g~~~eAl~l~~~m~~~gi~pd~~t~~~ 708 (1076)
..|...|.. .++.++|.+.|++..+.| +...+..|...|.. .++.++|++.|++..+.| +...+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~ 188 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 778888887 789999999999998865 56778888888887 789999999999998764 5667777
Q ss_pred HHHHHhc----CCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhh----cCCHHHHHHHHHhcCC-CChHHHHHHHHHH
Q 038364 709 LLQTCGG----LGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSK----SGNLKSAREVFRKSAN-KTLASWNCMIMGF 779 (1076)
Q Consensus 709 lL~a~~~----~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k----~G~~~~A~~vf~~m~~-~d~~s~n~li~~~ 779 (1076)
+-..+.. .++.++|...+....+.| +...+..|..+|.. .++.++|.+.|++..+ .+...+..+...|
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y 265 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYIL 265 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777776 899999999999998865 56677888888986 8999999999998765 4667788888888
Q ss_pred HH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHH
Q 038364 780 AI----YGNGKEAILLFHELLETGFQPDAITFTALLAACKNS-----GLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLL 850 (1076)
Q Consensus 780 ~~----~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~-----g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l 850 (1076)
.. .++.++|+++|++..+.| +...+..+...+... ++.++|.+.|++..+. .+...+..+..+|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y 338 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIY 338 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHH
Confidence 88 899999999999998765 444555666667776 8999999999998764 2456778888888
Q ss_pred HhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHH----c
Q 038364 851 GKAG---YLDEAWDFIRTMPFKPDATIWGALLGSCRI----HGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAM----S 919 (1076)
Q Consensus 851 ~r~G---~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~----~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~----~ 919 (1076)
.+.| +.++|.+++++.-...+...|..|...+.. .++.++|...++++.+.. ++..+..|+.+|.. .
T Consensus 339 ~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~ 416 (490)
T 2xm6_A 339 FRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVE 416 (490)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSC
T ss_pred HhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCC
Confidence 8867 889999999987434678899999999988 899999999999998864 57899999999999 8
Q ss_pred CChHHHHHHHHHHHhCC
Q 038364 920 NRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 920 G~~~eA~~~~~~m~~~g 936 (1076)
++.++|.+.+++..+.+
T Consensus 417 ~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 417 RDYVQAWAWFDTASTND 433 (490)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC
Confidence 99999999999998876
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-13 Score=151.21 Aligned_cols=270 Identities=11% Similarity=0.026 Sum_probs=206.5
Q ss_pred hhhhcCChhHHHHHHHHhHhcCCCCc--hHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCc
Q 038364 642 GYSIWGQSKEALVIIHHMKNSGIYPN--VVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLL 719 (1076)
Q Consensus 642 ~y~k~g~~~~A~~lf~~m~~~gi~pd--~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~ 719 (1076)
-....|+++.|...++..... .|+ ......+..+|...|++++|+..++.. -.|+..++..+...+...++.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcH
Confidence 344568888888877766443 333 345556677888888888888766442 355667777777888888888
Q ss_pred hhHHHHHHHHHHcCCCC-ChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 038364 720 QNGKEIHCLCLKNGFIK-DAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLET 798 (1076)
Q Consensus 720 ~~a~~i~~~~~~~g~~~-d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~ 798 (1076)
+.+.+.++.+++.+..| +...+..+..+|.+.|++++|.+.+++ ..+...|..++..|.+.|+.++|++.|+++.+.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 88888888888766544 456677788999999999999999998 567788999999999999999999999999984
Q ss_pred CCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHH
Q 038364 799 GFQPDAITF---TALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DAT 873 (1076)
Q Consensus 799 g~~Pd~~t~---~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~ 873 (1076)
.|+.... .+.+..+...|++++|..+|+++.+. .+.+...++.+..+|.+.|++++|++.+++. ...| +..
T Consensus 160 --~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 160 --DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235 (291)
T ss_dssp --CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred --CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 5775422 12223344568999999999999875 3456778899999999999999999999886 3334 667
Q ss_pred HHHHHHHHHHHcCCchH-HHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHH
Q 038364 874 IWGALLGSCRIHGHLEY-AEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVER 927 (1076)
Q Consensus 874 ~~~~Ll~a~~~~g~~e~-A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~ 927 (1076)
+|..++..+...|+.++ +..+++++++++|+++.. .++..+.+.++++..
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHH
Confidence 89999999999999875 578899999999998643 455666666666654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-13 Score=156.84 Aligned_cols=278 Identities=14% Similarity=0.029 Sum_probs=148.3
Q ss_pred CCChHHHHH-HHHHHHhCCC---CCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHH
Q 038364 475 LGYVDVAWS-LFNKMNSSRI---QPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKY 550 (1076)
Q Consensus 475 ~g~~~~A~~-lf~~M~~~g~---~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~ 550 (1076)
.|++++|++ .|++...... ..+...|..+...+.+.|++++|+..|+++.+.. |+
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~------------------- 96 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PK------------------- 96 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TT-------------------
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC-------------------
Confidence 355666665 5554433211 1123445555555555555555555555555443 22
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038364 551 GRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEE 627 (1076)
Q Consensus 551 a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~ 627 (1076)
+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|++.|+++.+.
T Consensus 97 ---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 161 (368)
T 1fch_A 97 ---------------HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY 161 (368)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ---------------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 233445555566666666666666665432 35566777777777777777777777777665
Q ss_pred CCCCCccc-hhh---------------hhhhhhhcCChhHHHHHHHHhHhcCCC-CchHHHHHHHHHHhcCCChhHHHHH
Q 038364 628 EIKPDLVS-WNS---------------LVSGYSIWGQSKEALVIIHHMKNSGIY-PNVVTWTSLISGSLQNENYRESLKF 690 (1076)
Q Consensus 628 g~~pd~~t-~~~---------------Li~~y~k~g~~~~A~~lf~~m~~~gi~-pd~~ty~~LI~~~~~~g~~~eAl~l 690 (1076)
. |+... +.. .+..+...|++++|...|+++.+.... ++...|..+...|.+.|++++|++.
T Consensus 162 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 239 (368)
T 1fch_A 162 T--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC 239 (368)
T ss_dssp S--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred C--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3 22221 111 233333667777777777766653211 1355666666666666666666666
Q ss_pred HHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcC---CC
Q 038364 691 FIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSA---NK 767 (1076)
Q Consensus 691 ~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~---~~ 767 (1076)
|+++... .|+ +...+..+...|.+.|++++|.+.|++.. ..
T Consensus 240 ~~~al~~--~~~----------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 283 (368)
T 1fch_A 240 FTAALSV--RPN----------------------------------DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 283 (368)
T ss_dssp HHHHHHH--CTT----------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHh--CcC----------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 6666542 221 23344445555555555555555555433 22
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 038364 768 TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD------------AITFTALLAACKNSGLVEEGWKYFD 828 (1076)
Q Consensus 768 d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd------------~~t~~~ll~a~~~~g~~~eA~~~~~ 828 (1076)
+...|..+...|.+.|++++|+..|+++.+. .|+ ..+|..+..++...|+.++|..++.
T Consensus 284 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 284 YIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 3445556666666666666666666665542 121 3556666666666677666666554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.8e-14 Score=159.63 Aligned_cols=258 Identities=13% Similarity=0.012 Sum_probs=175.7
Q ss_pred ccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 038364 633 LVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQT 712 (1076)
Q Consensus 633 ~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a 712 (1076)
...+..+...+.+.|++++|.++|+++.+.. +.+...|..+...|.+.|++++|++.|+++.+. .|+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~---------- 131 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPN---------- 131 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT----------
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC----------
Confidence 3445666666666677777777776666532 224556666666666666666666666666542 221
Q ss_pred HhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCC-------------hHHHHHHHHHH
Q 038364 713 CGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKT-------------LASWNCMIMGF 779 (1076)
Q Consensus 713 ~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d-------------~~s~n~li~~~ 779 (1076)
+...+..+...|.+.|++++|.+.|+++.+.+ ...++.+...+
T Consensus 132 ------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~ 187 (365)
T 4eqf_A 132 ------------------------NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSP 187 (365)
T ss_dssp ------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------------------
T ss_pred ------------------------CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHH
Confidence 23344445555555555555555555443211 12334457778
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCH
Q 038364 780 AIYGNGKEAILLFHELLETGFQP---DAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYL 856 (1076)
Q Consensus 780 ~~~g~~~~Al~l~~~M~~~g~~P---d~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l 856 (1076)
...|++++|+..|+++.+. .| +..++..+...+...|++++|.++|+++.+. .+.+...|..+..+|.+.|++
T Consensus 188 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~ 263 (365)
T 4eqf_A 188 VDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRS 263 (365)
T ss_dssp -CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred hhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 8888888888888888874 44 4667888888888889999999988888764 123466888889999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC------------CchhHHHHHHHHHHcCCh
Q 038364 857 DEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC------------NSANYNLMMNLLAMSNRW 922 (1076)
Q Consensus 857 ~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~------------~~~~y~~L~~~y~~~G~~ 922 (1076)
++|.+.++++ ...| +..+|..+..+|...|++++|...+++++++.|+ +...+..|+.++...|+.
T Consensus 264 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 264 EEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 9999998886 3334 4778999999999999999999999999998876 357799999999999999
Q ss_pred HHHHHHHHH
Q 038364 923 EDVERLRHS 931 (1076)
Q Consensus 923 ~eA~~~~~~ 931 (1076)
+.|.++.++
T Consensus 344 ~~a~~~~~~ 352 (365)
T 4eqf_A 344 ELFQAANLG 352 (365)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999887654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.8e-13 Score=156.93 Aligned_cols=361 Identities=11% Similarity=0.004 Sum_probs=219.8
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHhhcCC------------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC---C--
Q 038364 567 LYVGTSLMDMYVKNDCLQNAQEVFDNMKN------------RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEE---I-- 629 (1076)
Q Consensus 567 ~~v~~aLi~~y~k~g~~~~A~~lf~~m~~------------~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g---~-- 629 (1076)
...||.|...|...|+.++|.+.|++..+ ...++|+.+...|...|++++|...+++..+.. .
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 45677777777777777777777765321 245678888888888888888888887765421 0
Q ss_pred -CCC-ccchhhhhhhhhhc--CChhHHHHHHHHhHhcCCCCc-hHHHHHHHHH---HhcCCChhHHHHHHHHHhhcCCCC
Q 038364 630 -KPD-LVSWNSLVSGYSIW--GQSKEALVIIHHMKNSGIYPN-VVTWTSLISG---SLQNENYRESLKFFIQMQQEDIKP 701 (1076)
Q Consensus 630 -~pd-~~t~~~Li~~y~k~--g~~~~A~~lf~~m~~~gi~pd-~~ty~~LI~~---~~~~g~~~eAl~l~~~m~~~gi~p 701 (1076)
.++ ..++..+..++.+. +++++|.+.|++..+. .|+ ...+..+... +...++.++|++.+++..+. .|
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p 206 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NP 206 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CS
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CC
Confidence 111 12333333344443 4688888888887764 343 3444444433 34567778888888887653 34
Q ss_pred C-hhhHHHHHHHHh----cCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHH
Q 038364 702 N-STTMSSLLQTCG----GLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWN 773 (1076)
Q Consensus 702 d-~~t~~~lL~a~~----~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n 773 (1076)
+ ..++..+...+. ..++.++|.+.+..+.+. ...+..++..+...|.+.|++++|.+.|++..+ .+..+|.
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 285 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC 285 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 3 344444443333 346777888888887774 234566777888888999999999888887653 3455666
Q ss_pred HHHHHHHHc-------------------CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 038364 774 CMIMGFAIY-------------------GNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTD 833 (1076)
Q Consensus 774 ~li~~~~~~-------------------g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~ 833 (1076)
.+...|... +..++|+..|++..+ ..|+. .++..+...+...|++++|.+.|++..+.
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 665555332 335677778887776 34443 45667777888899999999999887653
Q ss_pred CCCCCCcc----cHHHHHH-HHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCch
Q 038364 834 YNIIPTIE----HYSCMVD-LLGKAGYLDEAWDFIRTM-PFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSA 907 (1076)
Q Consensus 834 ~g~~p~~~----~y~~li~-~l~r~G~l~eA~~l~~~m-~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~ 907 (1076)
.|+.. .+..+.. .+.+.|+.++|++.+++. .+.|+...+...+ +.+..++++.++.+|+++.
T Consensus 364 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~ 431 (472)
T 4g1t_A 364 ---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMK---------DKLQKIAKMRLSKNGADSE 431 (472)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTT
T ss_pred ---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHH
Confidence 23322 2233333 234678899999888875 4566655443333 3455677788888999999
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhCCCccCcceEEE
Q 038364 908 NYNLMMNLLAMSNRWEDVERLRHSMDEVGVKSVLVWSWI 946 (1076)
Q Consensus 908 ~y~~L~~~y~~~G~~~eA~~~~~~m~~~g~~~~~~~swi 946 (1076)
+|..|+.+|...|++++|.+.+++..+.|-..+...+|+
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999999999988774444466664
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.8e-14 Score=160.94 Aligned_cols=231 Identities=10% Similarity=-0.024 Sum_probs=189.6
Q ss_pred hhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHH
Q 038364 703 STTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGF 779 (1076)
Q Consensus 703 ~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~ 779 (1076)
...+..+...+...|++++|...+..+++. .+.+...+..+...|.+.|++++|.+.|++..+ .+..+|..+...|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQ-DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 345667777777778888888888777774 234577888999999999999999999998763 4678999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHH
Q 038364 780 AIYGNGKEAILLFHELLETGFQPDAI-----------TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVD 848 (1076)
Q Consensus 780 ~~~g~~~~Al~l~~~M~~~g~~Pd~~-----------t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~ 848 (1076)
...|++++|+..|+++.+ ..|+.. .+..+...+...|++++|.++|+++.+...-.++...+..+..
T Consensus 144 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999998 445543 2233466788999999999999999876333335778999999
Q ss_pred HHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHH
Q 038364 849 LLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVE 926 (1076)
Q Consensus 849 ~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~ 926 (1076)
.|.+.|++++|.+.+++. . .+.+..+|..+..++...|++++|+..++++++++|+++..+..++.+|.+.|++++|.
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999987 2 34467899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCC
Q 038364 927 RLRHSMDEVG 936 (1076)
Q Consensus 927 ~~~~~m~~~g 936 (1076)
+.++++.+..
T Consensus 302 ~~~~~al~~~ 311 (365)
T 4eqf_A 302 SNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9999987643
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-13 Score=153.49 Aligned_cols=276 Identities=13% Similarity=-0.012 Sum_probs=179.7
Q ss_pred ccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 038364 633 LVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQT 712 (1076)
Q Consensus 633 ~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a 712 (1076)
...+..+...+.+.|++++|..+|+++.+.. +.+...|..+...+.+.|++++|.+.++++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3444555666667777777777777766532 2245566666666666777777777666665531 1233344444444
Q ss_pred HhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHH-HH-HHHHcCCHHHHHH
Q 038364 713 CGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCM-IM-GFAIYGNGKEAIL 790 (1076)
Q Consensus 713 ~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~l-i~-~~~~~g~~~~Al~ 790 (1076)
+...|++++|...+..+.+... .+...+..+.... ++......+ .. .+...|++++|+.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTST-TTTTC--------------------------------------CCTTSHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 4455555555555544444211 1111111110000 000000011 12 2666777888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CC-
Q 038364 791 LFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PF- 868 (1076)
Q Consensus 791 l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~- 868 (1076)
.++++.+.. +.+...+..+...+...|++++|.++++++.+. .+.+...+..+...|.+.|++++|.+.++++ ..
T Consensus 160 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 160 LLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 888887742 234567777777888888888888888888754 1234667888888999999999999988886 22
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC------------CchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 869 KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC------------NSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 869 ~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~------------~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
+.+..+|..+...+...|++++|...+++++++.|+ ++..+..++.+|.+.|++++|.+++++.
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 345778999999999999999999999999999998 6888999999999999999999988754
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-13 Score=149.91 Aligned_cols=246 Identities=8% Similarity=0.021 Sum_probs=201.3
Q ss_pred HHHhcCCChhHHHHHHHHHhhcCCCCCh--hhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCC
Q 038364 676 SGSLQNENYRESLKFFIQMQQEDIKPNS--TTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGN 753 (1076)
Q Consensus 676 ~~~~~~g~~~eAl~l~~~m~~~gi~pd~--~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~ 753 (1076)
.-....|++.+|++.+++... ..|+. .....+..++...|+++.+...++. .-.|+...+..+...|.+.|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 445668999999999988754 34543 3556677899999999988875533 234567788889999999999
Q ss_pred HHHHHHHHHhcC----CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038364 754 LKSAREVFRKSA----NK-TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFD 828 (1076)
Q Consensus 754 ~~~A~~vf~~m~----~~-d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~ 828 (1076)
.++|.+.++++. .| +...|..+...+.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+.|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999864 23 456778888999999999999999987 4566788888889999999999999999
Q ss_pred HhhhcCCCCCCccc---HHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCC
Q 038364 829 SMSTDYNIIPTIEH---YSCMVDLLGKAGYLDEAWDFIRTM--PFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEP 903 (1076)
Q Consensus 829 ~m~~~~g~~p~~~~---y~~li~~l~r~G~l~eA~~l~~~m--~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P 903 (1076)
.+.+. .|+... ..+++..+...|++++|..+|+++ ..+.+...|+.+..++...|++++|+..++++++++|
T Consensus 155 ~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 155 KMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99875 365431 123445566679999999999998 2456788999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCChHH-HHHHHHHHHhCC
Q 038364 904 CNSANYNLMMNLLAMSNRWED-VERLRHSMDEVG 936 (1076)
Q Consensus 904 ~~~~~y~~L~~~y~~~G~~~e-A~~~~~~m~~~g 936 (1076)
+++.++..++.++...|++++ +.++++++.+..
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999987 578988886544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-12 Score=145.38 Aligned_cols=255 Identities=13% Similarity=0.014 Sum_probs=158.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 038364 435 NCLISMYSRNNKLELATRVFDSMK---DHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHG 511 (1076)
Q Consensus 435 n~Li~~y~k~g~~~~A~~lf~~m~---~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g 511 (1076)
-.+...+.+.|++++|..+|+++. ..+...|..+...+.+.|++++|.+.|+++.+.... +..+|..+...+...|
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHcC
Confidence 344445555566666666555542 224455666666666666666666666666655333 5566666666666666
Q ss_pred ChhhHHHHHHHHHhcCCCCCcccHHHHH--------------HH--HHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 038364 512 SYQNVLTLLRGMQSLGFRPNGSSVSVVL--------------QA--VTELRLLKYGRESHGYILRNGLDYDLYVGTSLMD 575 (1076)
Q Consensus 512 ~~~~Al~l~~~m~~~gi~pd~~t~~~ll--------------~a--~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~ 575 (1076)
++++|++.++++.+.. |+.......+ .. +...|++++|...+..+++.... +..++..+..
T Consensus 104 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 180 (327)
T 3cv0_A 104 NANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGV 180 (327)
T ss_dssp CHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 6666666666666543 3322222111 22 45566777777777777665433 5566777777
Q ss_pred HHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHH
Q 038364 576 MYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEA 652 (1076)
Q Consensus 576 ~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A 652 (1076)
.|.+.|++++|.+.|++..+ .+..+|..+...|...|++++|++.|++..+.. +.+..++..+...|.+.|++++|
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 77777777777777776543 356677777777777777777777777776653 22455666777777777777777
Q ss_pred HHHHHHhHhcCCCC-----------chHHHHHHHHHHhcCCChhHHHHHHHHH
Q 038364 653 LVIIHHMKNSGIYP-----------NVVTWTSLISGSLQNENYRESLKFFIQM 694 (1076)
Q Consensus 653 ~~lf~~m~~~gi~p-----------d~~ty~~LI~~~~~~g~~~eAl~l~~~m 694 (1076)
.+.|++..+..... +...|..+...+.+.|+.++|..++++.
T Consensus 260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 77777766532111 3566777777777777777777776544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.5e-11 Score=143.47 Aligned_cols=388 Identities=11% Similarity=-0.049 Sum_probs=222.7
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhc-----C--CCCC-cccHHHHHHHHHhcCchHHHHHHHHHHHHcC--
Q 038364 493 IQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSL-----G--FRPN-GSSVSVVLQAVTELRLLKYGRESHGYILRNG-- 562 (1076)
Q Consensus 493 ~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~-----g--i~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g-- 562 (1076)
.......||.|...+...|++++|++.|++..+. + ..|+ ..+|..+-..+...|++++|...+..+.+..
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3334678999999999999999999999987542 1 1232 3567778888888999999988888776531
Q ss_pred ----CCC-chhHHHHHHHHHHhC--CCHHHHHHHHhhcCC---CCHhHHHHHHHH---HHhcCChHHHHHHHHHHHHcCC
Q 038364 563 ----LDY-DLYVGTSLMDMYVKN--DCLQNAQEVFDNMKN---RNIVAWNSLISG---YCFKGLFVNAKKMLNQMEEEEI 629 (1076)
Q Consensus 563 ----~~~-d~~v~~aLi~~y~k~--g~~~~A~~lf~~m~~---~d~~~~n~lI~~---~~~~g~~~~A~~lf~~M~~~g~ 629 (1076)
..+ ...++..+..++.+. +++++|...|++..+ .+...+..+... +...++.++|++.+++..+..
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 111 234454444455544 457888888887653 344555554444 344577788888888777653
Q ss_pred CCC-ccchhhhhhhh----hhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCCh-
Q 038364 630 KPD-LVSWNSLVSGY----SIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNS- 703 (1076)
Q Consensus 630 ~pd-~~t~~~Li~~y----~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~- 703 (1076)
|+ ...+..+...+ ...|+.++|.+++++..+.. +.+...|..+...|.+.|++++|++.+++..+. .|+.
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 281 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNA 281 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCH
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChH
Confidence 33 33444333333 34567788888888776542 235567778888888888888888888887763 4543
Q ss_pred hhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHH
Q 038364 704 TTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSA---NKTLASWNCMIMGFA 780 (1076)
Q Consensus 704 ~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~---~~d~~s~n~li~~~~ 780 (1076)
.++..+..++... +.. .... ............+..+.|...|++.. ..+...|..+...|.
T Consensus 282 ~~~~~lg~~y~~~-----~~~----~~~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 282 YLHCQIGCCYRAK-----VFQ----VMNL-------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHHHHH-----HHH----HHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHH----hhhH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHH
Confidence 3344333332211 000 0000 00111111222334567777777654 345568899999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHH
Q 038364 781 IYGNGKEAILLFHELLETGFQPDAI--TFTALLA-ACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLD 857 (1076)
Q Consensus 781 ~~g~~~~Al~l~~~M~~~g~~Pd~~--t~~~ll~-a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~ 857 (1076)
..|++++|++.|++..+....|... .+..+.. ...+.|+.++|.+.|++..+ +.|+...... .++
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~---------~~~ 413 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEK---------MKD 413 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHH---------HHH
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHH---------HHH
Confidence 9999999999999999854333322 1222222 24578999999999998864 4555432222 223
Q ss_pred HHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHH
Q 038364 858 EAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMM 913 (1076)
Q Consensus 858 eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~ 913 (1076)
.+.+++++. . .+.+..+|..|...+...|++++|+..+++++++.|.+|.++.-++
T Consensus 414 ~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 414 KLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 334444433 1 2345678999999999999999999999999999999887766554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.7e-12 Score=136.53 Aligned_cols=219 Identities=10% Similarity=-0.007 Sum_probs=161.7
Q ss_pred hHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038364 668 VVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDM 747 (1076)
Q Consensus 668 ~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~ 747 (1076)
...|..+...+.+.|++++|++.|++..+.. . +...+..+...
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~-----------------------------------~~~~~~~~~~~ 47 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--K-----------------------------------DITYLNNRAAA 47 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--C-----------------------------------CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--c-----------------------------------cHHHHHHHHHH
Confidence 3455555666666666666666666655443 3 34444555555
Q ss_pred HhhcCCHHHHHHHHHhcCCC------C----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 038364 748 YSKSGNLKSAREVFRKSANK------T----LASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNS 817 (1076)
Q Consensus 748 y~k~G~~~~A~~vf~~m~~~------d----~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~ 817 (1076)
|...|++++|.+.|++..+. + ...|..+...|...|++++|+..|++..+ +.|+.. .+...
T Consensus 48 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~ 118 (258)
T 3uq3_A 48 EYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKL 118 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHH
Confidence 55556666665555544321 1 35677778888888888888888888887 456643 34556
Q ss_pred CCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHH
Q 038364 818 GLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIA 894 (1076)
Q Consensus 818 g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~ 894 (1076)
|++++|.+.++.+... .| +...+..+...+.+.|++++|.+.+++. . .+.+..+|..+...+...|++++|+..
T Consensus 119 ~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 195 (258)
T 3uq3_A 119 RNAEKELKKAEAEAYV---NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD 195 (258)
T ss_dssp HHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 7888898888887653 33 3567788888999999999999998886 2 344677899999999999999999999
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 895 SRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 895 ~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
++++++++|+++..|..++.+|.+.|++++|.+.+++..+.
T Consensus 196 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 196 CNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988653
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-11 Score=132.58 Aligned_cols=244 Identities=10% Similarity=-0.151 Sum_probs=172.3
Q ss_pred hhhhcCChhHHHHHHHHhHhcCC---CCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCC
Q 038364 642 GYSIWGQSKEALVIIHHMKNSGI---YPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGL 718 (1076)
Q Consensus 642 ~y~k~g~~~~A~~lf~~m~~~gi---~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~ 718 (1076)
.+...|++++|...|+++.+... ..+...|..+...|...|++++|++.|+++.+. .
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~------------------ 73 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--R------------------ 73 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C------------------
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--C------------------
Confidence 34455666777777776665321 113445555556666666666666666655432 1
Q ss_pred chhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038364 719 LQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHEL 795 (1076)
Q Consensus 719 ~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M 795 (1076)
+.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|+..|+++
T Consensus 74 ----------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 137 (275)
T 1xnf_A 74 ----------------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAF 137 (275)
T ss_dssp ----------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 12345666677777788888888888876553 45678888889999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---
Q 038364 796 LETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD--- 871 (1076)
Q Consensus 796 ~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd--- 871 (1076)
.+ ..|+.......+..+...|++++|...++..... ..++... ..++..+...++.++|.+.+++. ...|+
T Consensus 138 ~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 212 (275)
T 1xnf_A 138 YQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAE 212 (275)
T ss_dssp HH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHH
T ss_pred HH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccc
Confidence 87 4666665555556667779999999999877764 2233333 44777888888899999999886 33332
Q ss_pred --HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHH
Q 038364 872 --ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLR 929 (1076)
Q Consensus 872 --~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~ 929 (1076)
..+|..+...+...|++++|...++++++++|++...+ +..+...|++++|.+-+
T Consensus 213 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 213 HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred cccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 56888999999999999999999999999999875444 66788889999988765
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.38 E-value=6.8e-12 Score=134.49 Aligned_cols=240 Identities=10% Similarity=-0.037 Sum_probs=160.6
Q ss_pred ccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCC--CCChhhHHHHH
Q 038364 633 LVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDI--KPNSTTMSSLL 710 (1076)
Q Consensus 633 ~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi--~pd~~t~~~lL 710 (1076)
...|..+...+.+.|++++|...|++..+.. .+...|..+...|.+.|++++|++.+++..+... .|+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------ 76 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------ 76 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH------
Confidence 3456778889999999999999999999876 7889999999999999999999999999875311 11110
Q ss_pred HHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 038364 711 QTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAIL 790 (1076)
Q Consensus 711 ~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~ 790 (1076)
....++..+...|.+.|++++|.+.|++..+.+.. ...+...|+.++|+.
T Consensus 77 -------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 77 -------------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELK 126 (258)
T ss_dssp -------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHH
Confidence 00223344445555555555555555444321100 123444556666666
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 038364 791 LFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PF 868 (1076)
Q Consensus 791 l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~ 868 (1076)
.++++.. ..|+. ..+..+...+...|++++|.+.|+++.+.. +.+...|..+...|.+.|++++|.+.+++. ..
T Consensus 127 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 127 KAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 6666665 34443 345555556667777777777777766531 223556777777777777777777777765 22
Q ss_pred -CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCC------CCCchhHHHHHH
Q 038364 869 -KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLE------PCNSANYNLMMN 914 (1076)
Q Consensus 869 -~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~------P~~~~~y~~L~~ 914 (1076)
+.+...|..+...+...|++++|...+++++++. |++...+..+..
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 3346678888888888899999999999988887 776555555443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.37 E-value=8.4e-12 Score=131.56 Aligned_cols=192 Identities=14% Similarity=0.035 Sum_probs=153.6
Q ss_pred CChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 038364 736 KDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALL 811 (1076)
Q Consensus 736 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll 811 (1076)
++...+..+...|.+.|++++|...|++..+ .+...|..+...+.+.|+.++|+..|++..+ ..|+. ..+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHH
Confidence 4566777888899999999999999987654 3567888899999999999999999999988 45654 5677777
Q ss_pred HHHHhc-----------CCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 038364 812 AACKNS-----------GLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPDATIWGAL 878 (1076)
Q Consensus 812 ~a~~~~-----------g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd~~~~~~L 878 (1076)
..+... |++++|...|++..+. .|+ ...+..+..+|.+.|++++|++.+++. ....+...|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 788888 9999999999998764 454 668889999999999999999999886 222788899999
Q ss_pred HHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 879 LGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 879 l~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
..++...|++++|+..++++++++|+++..+..++.+|.+.|++++|.+.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.3e-11 Score=131.95 Aligned_cols=247 Identities=11% Similarity=-0.035 Sum_probs=125.5
Q ss_pred hhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCCh--hhHHHHHHHH
Q 038364 636 WNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNS--TTMSSLLQTC 713 (1076)
Q Consensus 636 ~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~--~t~~~lL~a~ 713 (1076)
+......+.+.|++++|...|++..+.. +.+...|..+...|.+.|++++|++.+++..+.+..|+. .+|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344555666666666666666666531 123335666666666666666666666666552211111 1134444444
Q ss_pred hcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 038364 714 GGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFH 793 (1076)
Q Consensus 714 ~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~ 793 (1076)
...|++++|...+..+++.. ..+...|..+...|...|++++|++.|+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~--------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 132 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD--------------------------------TTRLDMYGQIGSYFYNKGNFPLAIQYME 132 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS--------------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHG
T ss_pred HHcccHHHHHHHHHHHHhcC--------------------------------cccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 44455555555544444421 1233344444444444444444444444
Q ss_pred HHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCC---HHHHHHHHHhC--
Q 038364 794 ELLETGFQPDAI-TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGY---LDEAWDFIRTM-- 866 (1076)
Q Consensus 794 ~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~---l~eA~~l~~~m-- 866 (1076)
+..+. .|+.. .+..+...+...+++++|.+.|+.+.+. .|+ ...+..+...+...|+ .++|...+++.
T Consensus 133 ~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 133 KQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp GGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 44432 33222 2222221233333555555555554432 222 3344444444444444 44444444443
Q ss_pred --CCCCC------HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcC
Q 038364 867 --PFKPD------ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSN 920 (1076)
Q Consensus 867 --~~~pd------~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G 920 (1076)
...|+ ..+|..+...+...|++++|...++++++++|+++.+...+..+....+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 11122 2467778888888999999999999999999998777766666554443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-10 Score=124.61 Aligned_cols=197 Identities=11% Similarity=0.001 Sum_probs=147.9
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038364 738 AYVATGLIDMYSKSGNLKSAREVFRKSA---NKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAAC 814 (1076)
Q Consensus 738 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~ 814 (1076)
...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+.. ..+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 3455666667777777777777776654 2345677777777888888888888888877642 22455667777778
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHH
Q 038364 815 KNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYA 891 (1076)
Q Consensus 815 ~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A 891 (1076)
...|++++|.++++++.+ .+..|+ ...+..+...|.+.|++++|.+.+++. . .+.+...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888765 234443 556777888888888888888888775 2 233567888888888889999999
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 892 EIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 892 ~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
...++++++..|++...+..++.+|.+.|++++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999998888888888889999999999999999988886654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-10 Score=120.16 Aligned_cols=198 Identities=12% Similarity=0.030 Sum_probs=158.2
Q ss_pred ChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038364 737 DAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAA 813 (1076)
Q Consensus 737 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a 813 (1076)
+...+..+...|...|++++|.+.|++..+ .+...|..+...|...|+.++|++.|+++.+.. ..+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 455667788888888888888888876552 456678888888888899999999988888742 2345677777778
Q ss_pred HHhc-CCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCch
Q 038364 814 CKNS-GLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHLE 889 (1076)
Q Consensus 814 ~~~~-g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~e 889 (1076)
+... |++++|.++++.+.+ .+..|+ ...+..+...+.+.|++++|.+.++++ .. +.+...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 999999999988876 233343 567788888899999999999888876 22 335778888888899999999
Q ss_pred HHHHHHHHHhcCCC-CCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 890 YAEIASRRLFKLEP-CNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 890 ~A~~~~~~l~~l~P-~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
+|...++++++..| ++...+..++.++...|+.++|..+++.+.+..
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 99999999999999 888888889999999999999999998886543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-10 Score=134.19 Aligned_cols=343 Identities=12% Similarity=-0.021 Sum_probs=186.7
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCC-CCHhHHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCCccchhhhhhhhhhcC-
Q 038364 573 LMDMYVKNDCLQNAQEVFDNMKN-RNIVAWNSLISGYCFKGLF---VNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWG- 647 (1076)
Q Consensus 573 Li~~y~k~g~~~~A~~lf~~m~~-~d~~~~n~lI~~~~~~g~~---~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g- 647 (1076)
+...+.+.|++++|.++|++..+ .+..++..+-..|...|+. ++|++.|++..+. +...+..|...+...|
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 45566677777777777776644 3445555555666666666 7777777776643 4444555555333333
Q ss_pred ----ChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChh---HHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCch
Q 038364 648 ----QSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYR---ESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQ 720 (1076)
Q Consensus 648 ----~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~---eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~ 720 (1076)
+.++|.+.|++..+.|. ...+..|...|...+..+ ++.+.+.+....|. ......+...+...+.++
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcc
Confidence 56677777777766542 225556666666555433 34444444443332 334444555555555555
Q ss_pred hHHHHHHHHHHcCCCCChhhHHHHHHHHhhcC---CHHHHHHHHHhcCCC---ChHHHHHHHHHHHHc----CCHHHHHH
Q 038364 721 NGKEIHCLCLKNGFIKDAYVATGLIDMYSKSG---NLKSAREVFRKSANK---TLASWNCMIMGFAIY----GNGKEAIL 790 (1076)
Q Consensus 721 ~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G---~~~~A~~vf~~m~~~---d~~s~n~li~~~~~~----g~~~~Al~ 790 (1076)
.+......+.+.-...++..+..|..+|.+.| +.++|.+.|++..+. +...+..+...|... ++.++|+.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 55444333333323334446667777777777 777777777665432 233335555555443 57777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcC-----CHHHHHHH
Q 038364 791 LFHELLETGFQPDAITFTALLAA-C--KNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAG-----YLDEAWDF 862 (1076)
Q Consensus 791 l~~~M~~~g~~Pd~~t~~~ll~a-~--~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G-----~l~eA~~l 862 (1076)
+|++.. .| .| ..+..+-.. + ...++.++|.++|++..+. | +...+..|..+|. .| +.++|.++
T Consensus 239 ~~~~aa-~g-~~--~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 239 LLEKIA-PG-YP--ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHG-GG-ST--HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHc-CC-CH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 777766 32 22 223333333 2 3467777777777776653 3 4556666666666 44 77777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHH----cCChHHHHHHHHHHHh
Q 038364 863 IRTMPFKPDATIWGALLGSCRI----HGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAM----SNRWEDVERLRHSMDE 934 (1076)
Q Consensus 863 ~~~m~~~pd~~~~~~Ll~a~~~----~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~----~G~~~eA~~~~~~m~~ 934 (1076)
|++.- .-+...+..|...|.. ..|.++|...++++.+. .++..+..|+.+|.. ..+.++|...+++..+
T Consensus 310 ~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 310 FEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 77776 5566666666655554 23777777777777653 345677777777764 3467777777777766
Q ss_pred CCC
Q 038364 935 VGV 937 (1076)
Q Consensus 935 ~g~ 937 (1076)
.|.
T Consensus 387 ~g~ 389 (452)
T 3e4b_A 387 QDT 389 (452)
T ss_dssp TCC
T ss_pred CCC
Confidence 663
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-10 Score=136.44 Aligned_cols=371 Identities=12% Similarity=0.006 Sum_probs=229.1
Q ss_pred HHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCH---HHHHHHHhhcCCCCHhHHHHHHHHHHhcC-----C
Q 038364 542 VTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCL---QNAQEVFDNMKNRNIVAWNSLISGYCFKG-----L 613 (1076)
Q Consensus 542 ~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~---~~A~~lf~~m~~~d~~~~n~lI~~~~~~g-----~ 613 (1076)
..+.|++++|.+.+..+.+.| +...+..|-.+|...|+. ++|...|++..+.+...+..+-..+...+ +
T Consensus 13 ~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 13 ALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHH
T ss_pred HHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcC
Confidence 334455555555555555544 222333455556666776 78888888777666667777776555555 6
Q ss_pred hHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhH---HHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHH
Q 038364 614 FVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKE---ALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKF 690 (1076)
Q Consensus 614 ~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~---A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l 690 (1076)
.++|++.|++..+.| +...+..|...|...+..++ +.+.+....+.| +...+..+...|...+.++++.+.
T Consensus 90 ~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 90 HHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHH
Confidence 788999999988866 33467777777776655443 444444444433 456677777788877765555544
Q ss_pred HHHHhhcCCCCChhhHHHHHHHHhcCC---CchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhc----CCHHHHHHHHHh
Q 038364 691 FIQMQQEDIKPNSTTMSSLLQTCGGLG---LLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKS----GNLKSAREVFRK 763 (1076)
Q Consensus 691 ~~~m~~~gi~pd~~t~~~lL~a~~~~g---~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~----G~~~~A~~vf~~ 763 (1076)
.....+.-...+...+..+-..+...| +.++|...+....+.|. ++...+..|..+|... ++.++|.+.|++
T Consensus 164 a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~ 242 (452)
T 3e4b_A 164 VERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEK 242 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 333322212233347777777787888 88889999988888763 3344445677777665 799999999998
Q ss_pred cCCCChHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHhhhcCC
Q 038364 764 SANKTLASWNCMIMG-F--AIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSG-----LVEEGWKYFDSMSTDYN 835 (1076)
Q Consensus 764 m~~~d~~s~n~li~~-~--~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g-----~~~eA~~~~~~m~~~~g 835 (1076)
....+...+..|... | ...++.++|+++|++..+.| +...+..|-..|. .| +.++|.++|++..
T Consensus 243 aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---- 314 (452)
T 3e4b_A 243 IAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---- 314 (452)
T ss_dssp HGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----
T ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----
Confidence 874466778877776 4 46899999999999999877 4555555555555 55 9999999998875
Q ss_pred CCCCcccHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHhcCCCCCch
Q 038364 836 IIPTIEHYSCMVDLLGK----AGYLDEAWDFIRTMPFKPDATIWGALLGSCRI----HGHLEYAEIASRRLFKLEPCNSA 907 (1076)
Q Consensus 836 ~~p~~~~y~~li~~l~r----~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~----~g~~e~A~~~~~~l~~l~P~~~~ 907 (1076)
.-++..+..|..+|.. ..+.++|.+++++.-..-+......|...|.. ..|.++|...++++.+..+. .
T Consensus 315 -~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~--~ 391 (452)
T 3e4b_A 315 -GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP--E 391 (452)
T ss_dssp -TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH--H
T ss_pred -CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH--H
Confidence 3456677788888876 34999999999987333344455566666653 46899999999999887653 3
Q ss_pred hHHHHHHHHHH--cCChHHHHHHHHHHH
Q 038364 908 NYNLMMNLLAM--SNRWEDVERLRHSMD 933 (1076)
Q Consensus 908 ~y~~L~~~y~~--~G~~~eA~~~~~~m~ 933 (1076)
.-..+..+... .++.++|.++.++-+
T Consensus 392 a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 392 ANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 44444444322 234566666666543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=7.7e-11 Score=125.17 Aligned_cols=197 Identities=11% Similarity=0.061 Sum_probs=130.7
Q ss_pred ChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038364 737 DAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAA 813 (1076)
Q Consensus 737 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a 813 (1076)
....+..+...|.+.|++++|...|++..+ .+...|..+...+...|++++|+..|+++.+.. ..+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344555666677777777777777776643 345667777777777888888888887777632 2244566667777
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHH
Q 038364 814 CKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYA 891 (1076)
Q Consensus 814 ~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A 891 (1076)
+...|++++|.++++++.+.. ..+...+..+...|.+.|++++|.+.++++ . .+.+...|..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 777888888888887776541 234556777778888888888888888775 2 234566777888888888888888
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 892 EIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 892 ~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
+..++++++..|+++..+..++.+|.+.|++++|.+.++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 888888888888888888888888888888888888888876543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.26 E-value=4.8e-10 Score=120.01 Aligned_cols=172 Identities=16% Similarity=0.026 Sum_probs=128.8
Q ss_pred ChhhHHHHHHHHhhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 038364 737 DAYVATGLIDMYSKSGNLKSAREVFRKSA---NKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLA 812 (1076)
Q Consensus 737 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~ 812 (1076)
+...+..+...|.+.|++++|.+.|++.. ..+...|..+...|...|++++|++.|+++.+.+..|+. ..+..+..
T Consensus 70 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~ 149 (252)
T 2ho1_A 70 SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 149 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHH
Confidence 34455666667777777777777776554 235567777778888888888888888887764455654 45666777
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchH
Q 038364 813 ACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEY 890 (1076)
Q Consensus 813 a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~ 890 (1076)
.+...|++++|.++++++.+.. ..+...+..++..|.+.|++++|.+.++++ . .+.+...|..+...+...|+.++
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (252)
T 2ho1_A 150 VSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDT 227 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHH
Confidence 7888888888888888877641 223667788888899999999999988886 3 33456678888888999999999
Q ss_pred HHHHHHHHhcCCCCCchhHH
Q 038364 891 AEIASRRLFKLEPCNSANYN 910 (1076)
Q Consensus 891 A~~~~~~l~~l~P~~~~~y~ 910 (1076)
|...+++++++.|+++....
T Consensus 228 A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 228 AASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHH
Confidence 99999999999998865543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-09 Score=119.45 Aligned_cols=224 Identities=12% Similarity=-0.021 Sum_probs=119.0
Q ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhc----CCCchhHHHHHHHHHHcCCCCChhhHH
Q 038364 667 NVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGG----LGLLQNGKEIHCLCLKNGFIKDAYVAT 742 (1076)
Q Consensus 667 d~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~----~g~~~~a~~i~~~~~~~g~~~d~~~~~ 742 (1076)
+...+..+...|.+.|++++|++.|++..+. -+...+..+...+.. .+++++|...+....+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3444555555666666666666666666541 123344444444444 555555555555555543 444555
Q ss_pred HHHHHHhh----cCCHHHHHHHHHhcCC-CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038364 743 GLIDMYSK----SGNLKSAREVFRKSAN-KTLASWNCMIMGFAI----YGNGKEAILLFHELLETGFQPDAITFTALLAA 813 (1076)
Q Consensus 743 ~Li~~y~k----~G~~~~A~~vf~~m~~-~d~~s~n~li~~~~~----~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a 813 (1076)
.+..+|.. .|++++|.+.|++..+ .+...+..+...|.. .++.++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 55566666 6666666666655432 244555666666666 666666666666666643 33344444444
Q ss_pred HHh----cCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-
Q 038364 814 CKN----SGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGK----AGYLDEAWDFIRTMPFKPDATIWGALLGSCRI- 884 (1076)
Q Consensus 814 ~~~----~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r----~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~- 884 (1076)
+.. .+++++|.++|++..+. .+...+..+..+|.+ .+++++|.+.+++.....+...+..+...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 554 56666666666655442 123444455555555 55555555555543111124444445555554
Q ss_pred ---cCCchHHHHHHHHHhcCCC
Q 038364 885 ---HGHLEYAEIASRRLFKLEP 903 (1076)
Q Consensus 885 ---~g~~e~A~~~~~~l~~l~P 903 (1076)
.++.++|...++++.+++|
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHHHcCC
Confidence 5555555555555555554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-10 Score=123.66 Aligned_cols=210 Identities=14% Similarity=0.046 Sum_probs=140.5
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHHc
Q 038364 706 MSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSA---NKTLASWNCMIMGFAIY 782 (1076)
Q Consensus 706 ~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~ 782 (1076)
|..+...+...|++++|...+..+++. ...+...+..+...|.+.|++++|.+.|++.. ..+...|..+...|...
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEE-NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVK 104 (243)
T ss_dssp ----------------CCTTHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHh
Confidence 333333344444444444444444432 12234555666677777777777777776654 23556777788888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 038364 783 GNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDF 862 (1076)
Q Consensus 783 g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l 862 (1076)
|++++|++.|+++.+.. ..+...+..+...+...|++++|.++++++.+. ...+...+..+...|.+.|++++|.+.
T Consensus 105 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888888887742 334556777777788888888888888887764 123466788888899999999999999
Q ss_pred HHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHc
Q 038364 863 IRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMS 919 (1076)
Q Consensus 863 ~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~ 919 (1076)
+++. . .+.+..+|..+...+...|++++|...++++++++|+++..+..+..+....
T Consensus 182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 8886 2 3345778999999999999999999999999999999988877776655443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-09 Score=118.85 Aligned_cols=223 Identities=11% Similarity=-0.007 Sum_probs=193.5
Q ss_pred ChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhh----cCCHHHHHHHHHhcCC-CChHHHHHHH
Q 038364 702 NSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSK----SGNLKSAREVFRKSAN-KTLASWNCMI 776 (1076)
Q Consensus 702 d~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k----~G~~~~A~~vf~~m~~-~d~~s~n~li 776 (1076)
+..++..+-..+...+++++|.+.+....+. .+...+..+..+|.. .|++++|.+.|++..+ .+...|..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4456677777888899999999999999983 355677889999999 9999999999998764 4678899999
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhcCCCCCCcccHHHHHH
Q 038364 777 MGFAI----YGNGKEAILLFHELLETGFQPDAITFTALLAACKN----SGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVD 848 (1076)
Q Consensus 777 ~~~~~----~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~----~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~ 848 (1076)
..|.. .++.++|+..|++..+.+ +...+..+-..+.. .++.++|.++|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 66778888888888 99999999999998874 3 5667888889
Q ss_pred HHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHH--
Q 038364 849 LLGK----AGYLDEAWDFIRTMPFKPDATIWGALLGSCRI----HGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAM-- 918 (1076)
Q Consensus 849 ~l~r----~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~----~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~-- 918 (1076)
+|.+ .++.++|.+.+++.-...+...+..+...+.. .+++++|+..++++.+.+| +..+..|+.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 9988 99999999999987333467788889999999 9999999999999999876 6789999999999
Q ss_pred --cCChHHHHHHHHHHHhCC
Q 038364 919 --SNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 919 --~G~~~eA~~~~~~m~~~g 936 (1076)
.|++++|.+.+++..+.|
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHT
T ss_pred CcccCHHHHHHHHHHHHHcC
Confidence 999999999999998776
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.6e-08 Score=121.89 Aligned_cols=432 Identities=10% Similarity=0.070 Sum_probs=264.3
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCC---hHHHHHHHHHHH
Q 038364 416 KQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKD---HNLSSWNSMISSYTGLGY---VDVAWSLFNKMN 489 (1076)
Q Consensus 416 ~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~lI~~~~~~g~---~~~A~~lf~~M~ 489 (1076)
...++..+.... .|...|..++..+.+.+.++.|+.+|+++.. .....|...+..-.+.|. .+.+.++|++..
T Consensus 52 i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal 130 (679)
T 4e6h_A 52 IGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL 130 (679)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence 334455555543 4777788888887777788888888877742 344567777777777777 777778887776
Q ss_pred hCC-CCCChhhHHHHHHHHHhcCCh----hhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHH-cCC
Q 038364 490 SSR-IQPDIITWNCLLSGHFTHGSY----QNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILR-NGL 563 (1076)
Q Consensus 490 ~~g-~~pd~~ty~~Li~~~~~~g~~----~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~-~g~ 563 (1076)
... ..|++..|..-+.-..+.++. +++ .+..+++|+.++. .|.
T Consensus 131 ~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~-------------------------------r~~vr~~FErAl~~vG~ 179 (679)
T 4e6h_A 131 SKELGNNDLSLWLSYITYVRKKNDIITGGEEA-------------------------------RNIVIQAFQVVVDKCAI 179 (679)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHH-------------------------------HHHHHHHHHHHHHHTTT
T ss_pred HhcCCCCCHHHHHHHHHHHHHhcccccccchh-------------------------------HHHHHHHHHHHHHHhCc
Confidence 653 235666666655544443332 111 1223344444433 244
Q ss_pred -CCc-hhHHHHHHHHHH---------hCCCHHHHHHHHhhcCC-C--CH-hHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038364 564 -DYD-LYVGTSLMDMYV---------KNDCLQNAQEVFDNMKN-R--NI-VAWNSLISGYCFKGLFVNAKKMLNQMEEEE 628 (1076)
Q Consensus 564 -~~d-~~v~~aLi~~y~---------k~g~~~~A~~lf~~m~~-~--d~-~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g 628 (1076)
.++ ..+|...+.... ..++++.++++|++... | +. ..|.....---..+. ..+.+++.+.
T Consensus 180 ~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---- 254 (679)
T 4e6h_A 180 FEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---- 254 (679)
T ss_dssp TCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH----
T ss_pred ccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh----
Confidence 332 345666665443 23456778888887764 2 11 233221111000000 0011111100
Q ss_pred CCCCccchhhhhhhhhhcCChhHHHHHHHHhHh--cCCC---------------C--------chHHHHHHHHHHhcCC-
Q 038364 629 IKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKN--SGIY---------------P--------NVVTWTSLISGSLQNE- 682 (1076)
Q Consensus 629 ~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~--~gi~---------------p--------d~~ty~~LI~~~~~~g- 682 (1076)
..+++.|...+.++.+ .++. | ....|...++---.++
T Consensus 255 -----------------~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~ 317 (679)
T 4e6h_A 255 -----------------SAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKL 317 (679)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTT
T ss_pred -----------------hHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCc
Confidence 0112222222222111 0000 0 0133444444333222
Q ss_pred ------ChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHH-HHHHHHHHcCCCCChhhHHHHHHHHhhcCCHH
Q 038364 683 ------NYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGK-EIHCLCLKNGFIKDAYVATGLIDMYSKSGNLK 755 (1076)
Q Consensus 683 ------~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~-~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~ 755 (1076)
..+.+..+|++.... +.-+...|.....-+...|+.+.|. .+++..+.. .+.+...+-..+..+.+.|+++
T Consensus 318 ~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e 395 (679)
T 4e6h_A 318 ELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIP 395 (679)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHH
T ss_pred cccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHH
Confidence 123455667777654 3446677777777777888999996 999998874 4456677888999999999999
Q ss_pred HHHHHHHhcCC-------------CC------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CC-CCCHHHHH
Q 038364 756 SAREVFRKSAN-------------KT------------LASWNCMIMGFAIYGNGKEAILLFHELLET-GF-QPDAITFT 808 (1076)
Q Consensus 756 ~A~~vf~~m~~-------------~d------------~~s~n~li~~~~~~g~~~~Al~l~~~M~~~-g~-~Pd~~t~~ 808 (1076)
.|+++|+++.+ |+ ...|-..+....+.|..+.|..+|++..+. +. .+......
T Consensus 396 ~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~ 475 (679)
T 4e6h_A 396 EIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLEN 475 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 99999987653 21 236888888888999999999999999885 21 22222222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCC-CCC----CHHHHHHHHHHHH
Q 038364 809 ALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMP-FKP----DATIWGALLGSCR 883 (1076)
Q Consensus 809 ~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~-~~p----d~~~~~~Ll~a~~ 883 (1076)
+.+. +...++.+.|+++|+...+.+ .-+...+...++.....|+.+.|..+|++.- ..| ....|...+.--.
T Consensus 476 A~lE-~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~ 552 (679)
T 4e6h_A 476 AYIE-YHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFES 552 (679)
T ss_dssp HHHH-HTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHH
T ss_pred HHHH-HHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 2222 122355899999999998863 2345567788999999999999999999962 233 3458999999999
Q ss_pred HcCCchHHHHHHHHHhcCCCCCc
Q 038364 884 IHGHLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 884 ~~g~~e~A~~~~~~l~~l~P~~~ 906 (1076)
.+|+.+.+..+.+++.+..|+++
T Consensus 553 ~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 553 KVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCc
Confidence 99999999999999999999874
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.22 E-value=7.4e-10 Score=115.72 Aligned_cols=207 Identities=14% Similarity=0.052 Sum_probs=145.0
Q ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHH
Q 038364 667 NVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLID 746 (1076)
Q Consensus 667 d~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~ 746 (1076)
+...|..+...+.+.|++++|++.|+++.+. .|+ +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~----------------------------------~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS--DPK----------------------------------NELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT----------------------------------CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--Ccc----------------------------------chHHHHHHHH
Confidence 4556666667777777777777777766542 121 2334455566
Q ss_pred HHhhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHH
Q 038364 747 MYSKSGNLKSAREVFRKSA---NKTLASWNCMIMGFAIY-GNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVE 821 (1076)
Q Consensus 747 ~y~k~G~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~-g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~ 821 (1076)
.|...|++++|.+.|++.. ..+...|..+...+... |++++|+..|+++.+.+..|+. ..+..+...+...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 6666666666666666543 23455677777777777 8888888888887774344543 45666777788888888
Q ss_pred HHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-CC-C-CCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 038364 822 EGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-K-PDATIWGALLGSCRIHGHLEYAEIASRR 897 (1076)
Q Consensus 822 eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~-pd~~~~~~Ll~a~~~~g~~e~A~~~~~~ 897 (1076)
+|.++++++.+. .| +...+..++..|.+.|++++|.+.+++. .. + .+...|..+...+...|+.+.|...++.
T Consensus 131 ~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 131 LAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 888888887653 23 3567778888888888888888888876 22 2 4566777777778899999999999999
Q ss_pred HhcCCCCCchhHHHH
Q 038364 898 LFKLEPCNSANYNLM 912 (1076)
Q Consensus 898 l~~l~P~~~~~y~~L 912 (1076)
+.+..|+++.....+
T Consensus 208 ~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 208 LQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHCTTCHHHHHHH
T ss_pred HHHhCCCCHHHHHHh
Confidence 999999987665544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=9.7e-10 Score=118.99 Aligned_cols=244 Identities=11% Similarity=-0.038 Sum_probs=131.0
Q ss_pred HhCCChhHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChH
Q 038364 372 LRNEKWENAIKLFREMQFSSAK--A-ISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLE 448 (1076)
Q Consensus 372 ~~~g~~~eAl~lf~~M~~~g~~--p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~ 448 (1076)
...|++++|++.|+++.+.... | +..++..+...+...|++++|...+..+++...
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--------------------- 74 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP--------------------- 74 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---------------------
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC---------------------
Confidence 3456777777777777654211 1 233444445555555555555555555554432
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 038364 449 LATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGF 528 (1076)
Q Consensus 449 ~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi 528 (1076)
.+...|..+...|...|++++|++.|++..+.... +..+|..+...+.+.|++++|++.|+++.+..
T Consensus 75 -----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~- 141 (275)
T 1xnf_A 75 -----------DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD- 141 (275)
T ss_dssp -----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred -----------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-
Confidence 23344444555555555555555555555443322 44555555555555555555555555555433
Q ss_pred CCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCC-------HhHH
Q 038364 529 RPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRN-------IVAW 601 (1076)
Q Consensus 529 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d-------~~~~ 601 (1076)
|+.......+..+...|++++|...+....+.... +...+ .++..+...++.++|...+++....+ ...|
T Consensus 142 -~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 218 (275)
T 1xnf_A 142 -PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK-EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETN 218 (275)
T ss_dssp -TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHH
Confidence 44443344444444556666666666555554322 22222 35666677777777887777766532 3566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHH
Q 038364 602 NSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVII 656 (1076)
Q Consensus 602 n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf 656 (1076)
..+...|.+.|++++|...|++..+. .|+. +......+...|++++|.+-+
T Consensus 219 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 219 FYLGKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 77777777777777777777777654 2322 333344555556666655544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-10 Score=133.36 Aligned_cols=269 Identities=11% Similarity=0.020 Sum_probs=158.1
Q ss_pred chhhhhhhhhhcCChhHHHHHHHHhHhcCCCC-c--hHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHH
Q 038364 635 SWNSLVSGYSIWGQSKEALVIIHHMKNSGIYP-N--VVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQ 711 (1076)
Q Consensus 635 t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~p-d--~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~ 711 (1076)
.+..+...+.+.|++++|...|++..+..... . ...|..+...|...|++++|.+.+++.....
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------- 77 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA------------- 77 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-------------
Confidence 34445556666777777777777766542111 0 2456666666666777777777666654310
Q ss_pred HHhcCCCchhHHHHHHHHHHcCCCC-ChhhHHHHHHHHhhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHH
Q 038364 712 TCGGLGLLQNGKEIHCLCLKNGFIK-DAYVATGLIDMYSKSGNLKSAREVFRKSAN-----KT----LASWNCMIMGFAI 781 (1076)
Q Consensus 712 a~~~~g~~~~a~~i~~~~~~~g~~~-d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d----~~s~n~li~~~~~ 781 (1076)
.+.+..+ ...++..+...|...|++++|.+.+++..+ .+ ..+|..+...|..
T Consensus 78 ------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (406)
T 3sf4_A 78 ------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 139 (406)
T ss_dssp ------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ------------------HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 0000011 123344455555555555555555554332 11 2255556666666
Q ss_pred cCC--------------------HHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 038364 782 YGN--------------------GKEAILLFHELLE----TGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNI 836 (1076)
Q Consensus 782 ~g~--------------------~~~Al~l~~~M~~----~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~ 836 (1076)
.|+ +++|++.+++..+ .+-.|.. .++..+...+...|++++|.+++++..+...-
T Consensus 140 ~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 666 6666666665443 1111221 24555556677777777777777766542111
Q ss_pred CCC----cccHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC
Q 038364 837 IPT----IEHYSCMVDLLGKAGYLDEAWDFIRTMP----FKPD----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC 904 (1076)
Q Consensus 837 ~p~----~~~y~~li~~l~r~G~l~eA~~l~~~m~----~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~ 904 (1076)
.++ ...+..+...|.+.|++++|.+.+++.. ..++ ..++..+...+...|++++|...+++++++.+.
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 111 2356677777778888888777776641 1112 346677777788888888888888888776443
Q ss_pred C------chhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 905 N------SANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 905 ~------~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
. ...+..++.+|.+.|++++|.+.+++..+
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 45677888888888888888888887643
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.19 E-value=7.3e-11 Score=136.57 Aligned_cols=266 Identities=9% Similarity=-0.016 Sum_probs=164.0
Q ss_pred hhhhhhhhhcCChhHHHHHHHHhHhcCCCCch----HHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 038364 637 NSLVSGYSIWGQSKEALVIIHHMKNSGIYPNV----VTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQT 712 (1076)
Q Consensus 637 ~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~----~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a 712 (1076)
..+...+...|++++|...|++..+.... +. ..|..+...|...|++++|++.+++..+..
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------- 116 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA-------------- 116 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------------
Confidence 34445555666666666666666553211 11 345555566666666666666666554310
Q ss_pred HhcCCCchhHHHHHHHHHHcCCC-CChhhHHHHHHHHhhcCCHHHHHHHHHhcCCC---------ChHHHHHHHHHHHHc
Q 038364 713 CGGLGLLQNGKEIHCLCLKNGFI-KDAYVATGLIDMYSKSGNLKSAREVFRKSANK---------TLASWNCMIMGFAIY 782 (1076)
Q Consensus 713 ~~~~g~~~~a~~i~~~~~~~g~~-~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~---------d~~s~n~li~~~~~~ 782 (1076)
.+.+.. .....+..+...|...|++++|.+.|++..+. ....|..+...|...
T Consensus 117 -----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 117 -----------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp -----------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc
Confidence 000001 12334455566666666666666666543321 123566666677777
Q ss_pred CC-----------------HHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-
Q 038364 783 GN-----------------GKEAILLFHELLET----GFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT- 839 (1076)
Q Consensus 783 g~-----------------~~~Al~l~~~M~~~----g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~- 839 (1076)
|+ +++|++.+++..+. +-.|.. .++..+...+...|++++|.+++++..+...-.++
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 77 77777776665431 111222 35556666677788888888887776543111111
Q ss_pred ---cccHHHHHHHHHhcCCHHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC---
Q 038364 840 ---IEHYSCMVDLLGKAGYLDEAWDFIRTMP-F---KPD----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN--- 905 (1076)
Q Consensus 840 ---~~~y~~li~~l~r~G~l~eA~~l~~~m~-~---~pd----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~--- 905 (1076)
...+..+...|...|++++|.+.+++.. . ..+ ..+|..+...+...|++++|...+++++++.++.
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 2267778888888888888888887651 1 111 4577788888999999999999999988764432
Q ss_pred ---chhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 906 ---SANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 906 ---~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
...|..++.+|.+.|++++|.+.+++..+
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34788999999999999999999998754
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.3e-11 Score=136.29 Aligned_cols=295 Identities=12% Similarity=0.046 Sum_probs=202.9
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc-----cchhhhhhhhhhcCChhHHHHHHHHhHhc----CCCC
Q 038364 596 RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDL-----VSWNSLVSGYSIWGQSKEALVIIHHMKNS----GIYP 666 (1076)
Q Consensus 596 ~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~-----~t~~~Li~~y~k~g~~~~A~~lf~~m~~~----gi~p 666 (1076)
.....|......+.+.|++++|+..|++..+.. |+. ..+..+...|...|++++|...|++..+. +-.|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 345667778888999999999999999998873 443 46778889999999999999999987642 2122
Q ss_pred -chHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCC-CChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHH
Q 038364 667 -NVVTWTSLISGSLQNENYRESLKFFIQMQQEDIK-PNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGL 744 (1076)
Q Consensus 667 -d~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~-pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~L 744 (1076)
....|..+...|...|++++|++.+++..+.... ++.. ....++..+
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l 133 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNL 133 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH-------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccc-------------------------------chHHHHHHH
Confidence 2456778888888999999999998887652100 0100 012234445
Q ss_pred HHHHhhcCC--------------------HHHHHHHHHhcCC-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038364 745 IDMYSKSGN--------------------LKSAREVFRKSAN-----KT----LASWNCMIMGFAIYGNGKEAILLFHEL 795 (1076)
Q Consensus 745 i~~y~k~G~--------------------~~~A~~vf~~m~~-----~d----~~s~n~li~~~~~~g~~~~Al~l~~~M 795 (1076)
...|...|+ +++|.+.+++..+ .+ ...|..+...|...|++++|+..|++.
T Consensus 134 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 213 (406)
T 3sf4_A 134 GNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 213 (406)
T ss_dssp HHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHH
T ss_pred HHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555555 5555555544321 11 235677777788888888888887776
Q ss_pred HHCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----cccHHHHHHHHHhcCCHHHHHHHHHhC
Q 038364 796 LETG-FQPD----AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT----IEHYSCMVDLLGKAGYLDEAWDFIRTM 866 (1076)
Q Consensus 796 ~~~g-~~Pd----~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~----~~~y~~li~~l~r~G~l~eA~~l~~~m 866 (1076)
.+.. -.++ ..++..+...+...|++++|.+++++..+...-.++ ...+..+...|.+.|++++|.+.+++.
T Consensus 214 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 214 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 6421 0122 125666677788888888888888776542111111 456778888888999999998888775
Q ss_pred C----CCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCC------CCchhHHHHHHHHHHcCChH
Q 038364 867 P----FKPD----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEP------CNSANYNLMMNLLAMSNRWE 923 (1076)
Q Consensus 867 ~----~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P------~~~~~y~~L~~~y~~~G~~~ 923 (1076)
. ..++ ..+|..+...+...|++++|...+++++++.+ ....++..++.+|...|+..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 1 1122 45778888889999999999999999887632 23456888888998888753
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.19 E-value=5.6e-10 Score=113.57 Aligned_cols=165 Identities=13% Similarity=0.015 Sum_probs=124.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHH
Q 038364 768 TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCM 846 (1076)
Q Consensus 768 d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~l 846 (1076)
+...|..+...|.+.|++++|++.|++..+ +.|+. ..+..+...+...|++++|...+...... ...+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 345666777777777777777777777776 34544 45666666777777777777777776543 12234556666
Q ss_pred HHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHH
Q 038364 847 VDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWED 924 (1076)
Q Consensus 847 i~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~e 924 (1076)
...+...+++++|.+.+++. . .+.+...|..+...+...|++++|+..++++++++|+++.+|..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 77777888888888877775 2 234566888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 038364 925 VERLRHSMDEVG 936 (1076)
Q Consensus 925 A~~~~~~m~~~g 936 (1076)
|.+.+++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999999886643
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.19 E-value=2e-10 Score=136.35 Aligned_cols=192 Identities=9% Similarity=-0.004 Sum_probs=164.3
Q ss_pred CChhhHHHHHHHHhhcCCH-HHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038364 736 KDAYVATGLIDMYSKSGNL-KSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALL 811 (1076)
Q Consensus 736 ~d~~~~~~Li~~y~k~G~~-~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll 811 (1076)
.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|++.|++..+ +.|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHH
Confidence 3567777788888888888 888888877642 3567889999999999999999999999988 568877888888
Q ss_pred HHHHhc---------CCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhc--------CCHHHHHHHHHhC-CCCC--
Q 038364 812 AACKNS---------GLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKA--------GYLDEAWDFIRTM-PFKP-- 870 (1076)
Q Consensus 812 ~a~~~~---------g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~--------G~l~eA~~l~~~m-~~~p-- 870 (1076)
..+... |++++|.+.|++..+. .|+ ...|..+..+|.+. |++++|.+.+++. ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 888888 9999999999998764 344 67888899999988 9999999999987 3345
Q ss_pred --CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 871 --DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 871 --d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
+...|..+..++...|++++|+..++++++++|+++..+..++.++...|++++|.+.+.++
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 78899999999999999999999999999999999999999999999999999999765444
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.5e-10 Score=128.71 Aligned_cols=266 Identities=12% Similarity=0.025 Sum_probs=166.6
Q ss_pred hhhhhhhcCChhHHHHHHHHhHhcCCCCc---hHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhc
Q 038364 639 LVSGYSIWGQSKEALVIIHHMKNSGIYPN---VVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGG 715 (1076)
Q Consensus 639 Li~~y~k~g~~~~A~~lf~~m~~~gi~pd---~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~ 715 (1076)
....+...|++++|...|++..+...... ...|..+...|...|++++|.+.+++.....
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------- 73 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA----------------- 73 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----------------
Confidence 34455566666666666666655321100 2445556666666666666666666553210
Q ss_pred CCCchhHHHHHHHHHHcCCCC-ChhhHHHHHHHHhhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHHcCC-
Q 038364 716 LGLLQNGKEIHCLCLKNGFIK-DAYVATGLIDMYSKSGNLKSAREVFRKSAN-----KT----LASWNCMIMGFAIYGN- 784 (1076)
Q Consensus 716 ~g~~~~a~~i~~~~~~~g~~~-d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d----~~s~n~li~~~~~~g~- 784 (1076)
.+.+..+ ...++..+...|...|++++|.+.+++..+ .+ ..+|..+...|...|+
T Consensus 74 --------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 139 (338)
T 3ro2_A 74 --------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKS 139 (338)
T ss_dssp --------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred --------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcc
Confidence 0001111 133445566666666666666666655332 12 2256666677777777
Q ss_pred -------------------HHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-
Q 038364 785 -------------------GKEAILLFHELLET----GFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT- 839 (1076)
Q Consensus 785 -------------------~~~Al~l~~~M~~~----g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~- 839 (1076)
+++|++.+++..+. +-.|.. .++..+...+...|++++|.+++++..+...-.++
T Consensus 140 ~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 219 (338)
T 3ro2_A 140 FGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK 219 (338)
T ss_dssp SSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred cccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh
Confidence 77777777665431 111221 24556666677788888888888776542111111
Q ss_pred ---cccHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC---
Q 038364 840 ---IEHYSCMVDLLGKAGYLDEAWDFIRTMP----FKPD----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN--- 905 (1076)
Q Consensus 840 ---~~~y~~li~~l~r~G~l~eA~~l~~~m~----~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~--- 905 (1076)
...+..+...|.+.|++++|.+.+++.. ..++ ..++..+...+...|++++|...+++++++.|..
T Consensus 220 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 299 (338)
T 3ro2_A 220 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc
Confidence 2367778888888899999888887751 1122 4567778888999999999999999988765432
Q ss_pred ---chhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 906 ---SANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 906 ---~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
...+..++.+|.+.|++++|.+.+++..+.
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 347889999999999999999999998653
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.3e-09 Score=113.86 Aligned_cols=231 Identities=8% Similarity=0.009 Sum_probs=156.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCc--ccHHHHHHHHHh
Q 038364 467 SMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNG--SSVSVVLQAVTE 544 (1076)
Q Consensus 467 ~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~--~t~~~ll~a~~~ 544 (1076)
.....+.+.|++++|++.|++..+.... +...|..+...+...|++++|++.+++..+....|+. ..+..+...+..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3444555666666666666666655433 4446666666666666666666666666653211111 114555566666
Q ss_pred cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHH
Q 038364 545 LRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFKGLFVNAKKML 621 (1076)
Q Consensus 545 ~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf 621 (1076)
.|++++|...+..+++.... +..++..+...|.+.|++++|...|++..+ .+...|..+...+...+++++|++.|
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777766666665433 456788899999999999999999998875 35667777773444455999999999
Q ss_pred HHHHHcCCCCC-ccchhhhhhhhhhcCC---hhHHHHHHHHhHhc-CCCCc------hHHHHHHHHHHhcCCChhHHHHH
Q 038364 622 NQMEEEEIKPD-LVSWNSLVSGYSIWGQ---SKEALVIIHHMKNS-GIYPN------VVTWTSLISGSLQNENYRESLKF 690 (1076)
Q Consensus 622 ~~M~~~g~~pd-~~t~~~Li~~y~k~g~---~~~A~~lf~~m~~~-gi~pd------~~ty~~LI~~~~~~g~~~eAl~l 690 (1076)
++..+.. |+ ...+..+...+...|+ .++|...|++..+. .-.|+ ...|..+...|.+.|++++|.+.
T Consensus 166 ~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 166 VKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9998764 44 4566667777777787 88888888887752 11233 25777788888889999999999
Q ss_pred HHHHhhcCCCCCh
Q 038364 691 FIQMQQEDIKPNS 703 (1076)
Q Consensus 691 ~~~m~~~gi~pd~ 703 (1076)
|++..+ +.|+.
T Consensus 244 ~~~al~--~~p~~ 254 (272)
T 3u4t_A 244 WKNILA--LDPTN 254 (272)
T ss_dssp HHHHHH--HCTTC
T ss_pred HHHHHh--cCccH
Confidence 998876 34543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.17 E-value=4.3e-10 Score=128.99 Aligned_cols=244 Identities=10% Similarity=0.039 Sum_probs=180.2
Q ss_pred hHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCC-hhhHHHHHHHHhcCCC-chhHHHHHHHHHHcCCCCChhhHHHHH
Q 038364 668 VVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPN-STTMSSLLQTCGGLGL-LQNGKEIHCLCLKNGFIKDAYVATGLI 745 (1076)
Q Consensus 668 ~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd-~~t~~~lL~a~~~~g~-~~~a~~i~~~~~~~g~~~d~~~~~~Li 745 (1076)
...|+.+...+.+.|++++|++.+++.+. +.|+ ...|..+..++...|+ +++|...+..+++.. ..+...|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~--l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 45567777777888888888888888876 3454 4566777777777785 888888888877742 23566777888
Q ss_pred HHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh-cCCH
Q 038364 746 DMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD-AITFTALLAACKN-SGLV 820 (1076)
Q Consensus 746 ~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd-~~t~~~ll~a~~~-~g~~ 820 (1076)
.+|.+.|++++|...|+++.+ .+...|..+..++...|++++|+..|+++++ +.|+ ...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcc
Confidence 888888888888888887653 4667888888888888888888888888887 4554 4567777777777 5655
Q ss_pred HHH-----HHHHHHhhhcCCCCCC-cccHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC-----
Q 038364 821 EEG-----WKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAG--YLDEAWDFIRTMPFKP-DATIWGALLGSCRIHG----- 886 (1076)
Q Consensus 821 ~eA-----~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G--~l~eA~~l~~~m~~~p-d~~~~~~Ll~a~~~~g----- 886 (1076)
++| .+.|++..+ +.|+ ...|..+..+|.+.| ++++|.+.++++...| +...+..+...+...|
T Consensus 252 ~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccc
Confidence 666 477777664 3454 557777888888877 5888888888775444 4557778888887764
Q ss_pred ---C-chHHHHHHHHH-hcCCCCCchhHHHHHHHHHHc
Q 038364 887 ---H-LEYAEIASRRL-FKLEPCNSANYNLMMNLLAMS 919 (1076)
Q Consensus 887 ---~-~e~A~~~~~~l-~~l~P~~~~~y~~L~~~y~~~ 919 (1076)
+ .++|+.+++++ .+++|.....|..++..+...
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58899999999 899998888888877766543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-09 Score=114.85 Aligned_cols=191 Identities=16% Similarity=0.083 Sum_probs=92.3
Q ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCC-ChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHH
Q 038364 667 NVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKP-NSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLI 745 (1076)
Q Consensus 667 d~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~p-d~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li 745 (1076)
+...|..+...+.+.|++++|+..|++..+ ..| +...+..+..++...|++++|...++.+++.. +.+...+..+.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALK--ENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 444455555555555555555555555543 222 23344444444444555555555554444421 11233444455
Q ss_pred HHHhhc-----------CCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038364 746 DMYSKS-----------GNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALL 811 (1076)
Q Consensus 746 ~~y~k~-----------G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll 811 (1076)
..|.+. |++++|.+.|++..+ .+...|..+...|...|++++|+..|++..+.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 555554 666666666655432 234555566666666666666666666666544 4455555555
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHh
Q 038364 812 AACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRT 865 (1076)
Q Consensus 812 ~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~ 865 (1076)
.++...|++++|...|++..+. .|+ ...+..+..++.+.|++++|.+.+++
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5566666666666666665542 232 34455555555555666665555544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-09 Score=124.60 Aligned_cols=223 Identities=9% Similarity=0.063 Sum_probs=189.4
Q ss_pred hhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCC-ChhhHHHHHHHHhhcCC-HHHHHHHHHhcCC---CChHHHHHHHHH
Q 038364 704 TTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIK-DAYVATGLIDMYSKSGN-LKSAREVFRKSAN---KTLASWNCMIMG 778 (1076)
Q Consensus 704 ~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~-d~~~~~~Li~~y~k~G~-~~~A~~vf~~m~~---~d~~s~n~li~~ 778 (1076)
..|..+...+...|++++|...+..+++. .| +..+|+.+...|.+.|+ +++|.+.|++... .+...|+.+...
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 45667777788899999999999999984 44 57788999999999997 9999999998763 567899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHh-cCC
Q 038364 779 FAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGK-AGY 855 (1076)
Q Consensus 779 ~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r-~G~ 855 (1076)
+...|++++|+..|+++++ +.|+. ..|..+..++...|++++|...|+++.+. .|+ ...|+.+..+|.+ .|.
T Consensus 176 ~~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999998 56654 67888888999999999999999999864 454 6788999999999 677
Q ss_pred HHHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHHcC--CchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcC------
Q 038364 856 LDEA-----WDFIRTM-PFKP-DATIWGALLGSCRIHG--HLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSN------ 920 (1076)
Q Consensus 856 l~eA-----~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g--~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G------ 920 (1076)
.++| ++.+++. ...| +...|..+...+...| ++++|+..++++ +.+|+++..+..|+++|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 6777 4667665 3344 5679999999998888 699999999998 999999999999999999975
Q ss_pred ---ChHHHHHHHHHH-Hh
Q 038364 921 ---RWEDVERLRHSM-DE 934 (1076)
Q Consensus 921 ---~~~eA~~~~~~m-~~ 934 (1076)
..++|.++++++ .+
T Consensus 330 ~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 330 KEDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 358999999998 44
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.12 E-value=9.8e-08 Score=116.80 Aligned_cols=85 Identities=13% Similarity=0.170 Sum_probs=48.8
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC---cHHHHHHHHHHHHhCC-CCCHHHHH
Q 038364 360 DDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGA---FHEGKQIHGYVLKSAL-ESNLSVCN 435 (1076)
Q Consensus 360 d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~---~~~a~~i~~~~~~~g~-~~d~~v~n 435 (1076)
|..+|..+|..+.+.+.++.|..+|+++... ++....-|..-+..-.+.++ .+.+.++++..+.... .|++.+|.
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 6667777777776667777777777776654 23344455555555555555 6666666666655441 34555665
Q ss_pred HHHHHHHhCC
Q 038364 436 CLISMYSRNN 445 (1076)
Q Consensus 436 ~Li~~y~k~g 445 (1076)
..+....+.+
T Consensus 144 ~Yl~f~~~~~ 153 (679)
T 4e6h_A 144 SYITYVRKKN 153 (679)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhc
Confidence 5555444433
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.10 E-value=5.3e-10 Score=129.27 Aligned_cols=270 Identities=12% Similarity=0.035 Sum_probs=155.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc-----cchhhhhhhhhhcCChhHHHHHHHHhHhc----C-CCCchHHH
Q 038364 602 NSLISGYCFKGLFVNAKKMLNQMEEEEIKPDL-----VSWNSLVSGYSIWGQSKEALVIIHHMKNS----G-IYPNVVTW 671 (1076)
Q Consensus 602 n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~-----~t~~~Li~~y~k~g~~~~A~~lf~~m~~~----g-i~pd~~ty 671 (1076)
..+...+...|++++|+..|++..+.. |+. ..+..+...|...|++++|...|++..+. + .......|
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 344455666666666666666666552 332 24556666666777777777776665431 1 11234556
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHhhcCCC-CChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhh
Q 038364 672 TSLISGSLQNENYRESLKFFIQMQQEDIK-PNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSK 750 (1076)
Q Consensus 672 ~~LI~~~~~~g~~~eAl~l~~~m~~~gi~-pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k 750 (1076)
..+...|...|++++|++.+++..+.... .+. .....++..+...|..
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDR-------------------------------LSEGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhch-------------------------------HHHHHHHHHHHHHHHH
Confidence 66777777777777777777776532000 000 0011223334444444
Q ss_pred cCC-----------------HHHHHHHHHhcCC-----C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC
Q 038364 751 SGN-----------------LKSAREVFRKSAN-----K----TLASWNCMIMGFAIYGNGKEAILLFHELLETGF-QPD 803 (1076)
Q Consensus 751 ~G~-----------------~~~A~~vf~~m~~-----~----d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~-~Pd 803 (1076)
.|+ +++|.+.+++..+ . ....|..+...|...|++++|+..|++..+..- .++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 444 4444444433211 0 113555566666666666666666666554110 011
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----cccHHHHHHHHHhcCCHHHHHHHHHhCC-C---CCC
Q 038364 804 ----AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT----IEHYSCMVDLLGKAGYLDEAWDFIRTMP-F---KPD 871 (1076)
Q Consensus 804 ----~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~----~~~y~~li~~l~r~G~l~eA~~l~~~m~-~---~pd 871 (1076)
..++..+...+...|++++|.+++++..+...-..+ ...+..+...|.+.|++++|.+.+++.. . .++
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 124555666677777777777777665542111111 4566777788888888888888777651 1 112
Q ss_pred ----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC
Q 038364 872 ----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC 904 (1076)
Q Consensus 872 ----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~ 904 (1076)
..++..+...+...|++++|...+++++++.+.
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 346777888899999999999999999887663
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.1e-09 Score=121.68 Aligned_cols=274 Identities=12% Similarity=0.046 Sum_probs=147.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc-----cchhhhhhhhhhcCChhHHHHHHHHhHhc----CCCC-chHH
Q 038364 601 WNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDL-----VSWNSLVSGYSIWGQSKEALVIIHHMKNS----GIYP-NVVT 670 (1076)
Q Consensus 601 ~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~-----~t~~~Li~~y~k~g~~~~A~~lf~~m~~~----gi~p-d~~t 670 (1076)
+......+...|++++|+..|++..+.. |+. ..+..+...|...|++++|.+.|++..+. +-.| ....
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3334455666667777777776666552 332 34556666667777777777777665431 1111 2445
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHhhcCC-CCC----hhhHHHHHHHHhcCCC-------------chhHHHHHHHHHHc
Q 038364 671 WTSLISGSLQNENYRESLKFFIQMQQEDI-KPN----STTMSSLLQTCGGLGL-------------LQNGKEIHCLCLKN 732 (1076)
Q Consensus 671 y~~LI~~~~~~g~~~eAl~l~~~m~~~gi-~pd----~~t~~~lL~a~~~~g~-------------~~~a~~i~~~~~~~ 732 (1076)
|..+...|...|++++|.+.+++..+... .++ ..++..+...+...|+ .+.+...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~------- 158 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA------- 158 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH-------
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH-------
Confidence 66667777777777777777776643110 011 1123333333333333 0000000
Q ss_pred CCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC
Q 038364 733 GFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN-----KT----LASWNCMIMGFAIYGNGKEAILLFHELLETGF-QP 802 (1076)
Q Consensus 733 g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d----~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~-~P 802 (1076)
+++|.+.+++... .+ ...|..+...+...|++++|+..+++..+... .+
T Consensus 159 ---------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 159 ---------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 3333333332211 01 12445555566666666666666655543100 01
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----cccHHHHHHHHHhcCCHHHHHHHHHhCC----CCC
Q 038364 803 D----AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT----IEHYSCMVDLLGKAGYLDEAWDFIRTMP----FKP 870 (1076)
Q Consensus 803 d----~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~----~~~y~~li~~l~r~G~l~eA~~l~~~m~----~~p 870 (1076)
+ ..++..+...+...|++++|.+++++..+...-.++ ...+..+...|.+.|++++|.+.+++.. ..+
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 1 124555555666667777777666665432111111 4456677777777788887777776641 111
Q ss_pred C----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC
Q 038364 871 D----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC 904 (1076)
Q Consensus 871 d----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~ 904 (1076)
+ ..+|..+...+...|++++|...+++++++.++
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 1 346777888889999999999999999887664
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.6e-10 Score=124.69 Aligned_cols=237 Identities=16% Similarity=0.122 Sum_probs=121.0
Q ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHhhc-------CCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHc------C
Q 038364 667 NVVTWTSLISGSLQNENYRESLKFFIQMQQE-------DIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKN------G 733 (1076)
Q Consensus 667 d~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~-------gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~------g 733 (1076)
+...|..+...|...|++++|+.+++++.+. .......++..+...+...|++++|...+..+++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567778888888888888888888887652 11112334445555555556666665555555442 1
Q ss_pred CC-CChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCCH-H
Q 038364 734 FI-KDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLET------GFQPDA-I 805 (1076)
Q Consensus 734 ~~-~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~------g~~Pd~-~ 805 (1076)
-. .....+..+...|...|++++|.+.| +++.+. +-.|+. .
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-------------------------------~~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLC-------------------------------KRALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHH-------------------------------HHHHHHHHHHHCTTCHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHH-------------------------------HHHHHHHHHhcCCCChHHHH
Confidence 11 12334444445555555555555444 444432 111222 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcC-----CCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhCC----------CC
Q 038364 806 TFTALLAACKNSGLVEEGWKYFDSMSTDY-----NIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTMP----------FK 869 (1076)
Q Consensus 806 t~~~ll~a~~~~g~~~eA~~~~~~m~~~~-----g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m~----------~~ 869 (1076)
.+..+...+...|++++|.++++++.+.. +..|. ...+..+...|.+.|++++|.+.++++. ..
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 33444444555555555555555443320 00111 2344455555555555555555554431 00
Q ss_pred C-------CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 870 P-------DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 870 p-------d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
+ ....+..+...+...+.++++...++++.+..|..+..+..++.+|.+.|++++|.+.+++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 1112233334455567777778888888888888888899999999999999999999988754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.3e-08 Score=113.03 Aligned_cols=218 Identities=11% Similarity=0.052 Sum_probs=134.0
Q ss_pred hHHHHHHHHHhhcCCCCChhhHHHHHHHHh-------cCCCc-------hhHHHHHHHHHHcCCCCChhhHHHHHHHHhh
Q 038364 685 RESLKFFIQMQQEDIKPNSTTMSSLLQTCG-------GLGLL-------QNGKEIHCLCLKNGFIKDAYVATGLIDMYSK 750 (1076)
Q Consensus 685 ~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~-------~~g~~-------~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k 750 (1076)
++|...|++.... .+-+...|..+...+. ..|++ ++|..+++..++.-...+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 5666677766652 1223445555554443 24665 6677777776663112244567777777777
Q ss_pred cCCHHHHHHHHHhcCC--C-ChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHH
Q 038364 751 SGNLKSAREVFRKSAN--K-TLA-SWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAAC-KNSGLVEEGWK 825 (1076)
Q Consensus 751 ~G~~~~A~~vf~~m~~--~-d~~-s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~-~~~g~~~eA~~ 825 (1076)
.|++++|.++|++..+ | +.. .|..++..+.+.|+.++|..+|++..+.. +++...|....... ...|+.++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777776553 2 233 67777777777777777777777777632 12223333322221 12577777777
Q ss_pred HHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCC----CCC--CHHHHHHHHHHHHHcCCchHHHHHHHHHh
Q 038364 826 YFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMP----FKP--DATIWGALLGSCRIHGHLEYAEIASRRLF 899 (1076)
Q Consensus 826 ~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~----~~p--d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~ 899 (1076)
+|+...+.. +.+...|..+++.+.+.|+.++|..+|++.- +.| ....|..++.....+|+.+.|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777776532 1235566777777777777777777777651 243 35577777777777777777777777777
Q ss_pred cCCCCCc
Q 038364 900 KLEPCNS 906 (1076)
Q Consensus 900 ~l~P~~~ 906 (1076)
+..|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 7777654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.05 E-value=5e-09 Score=120.27 Aligned_cols=230 Identities=8% Similarity=-0.039 Sum_probs=105.5
Q ss_pred HHHHHhcCCChhHHHHHHHHHhhcCC-CCC----hhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCC-C-----ChhhHH
Q 038364 674 LISGSLQNENYRESLKFFIQMQQEDI-KPN----STTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFI-K-----DAYVAT 742 (1076)
Q Consensus 674 LI~~~~~~g~~~eAl~l~~~m~~~gi-~pd----~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~-~-----d~~~~~ 742 (1076)
....+...|++++|++.|++..+.-. .+| ..++..+...+...|+++.|...+...++.--. + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 34455666777777777776654200 111 234444444555555555555555544432000 0 123444
Q ss_pred HHHHHHhhcCCHHHHHHHHHhcCC-----CCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HHHH
Q 038364 743 GLIDMYSKSGNLKSAREVFRKSAN-----KTL----ASWNCMIMGFAIYGNGKEAILLFHELLET----GFQPDA-ITFT 808 (1076)
Q Consensus 743 ~Li~~y~k~G~~~~A~~vf~~m~~-----~d~----~s~n~li~~~~~~g~~~~Al~l~~~M~~~----g~~Pd~-~t~~ 808 (1076)
.+...|...|++++|.+.|++..+ .+. .+|+.+...|...|++++|+..|++..+. +..|+. .++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 555555555555555555544321 111 24445555555555555555555554431 111222 2344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCC
Q 038364 809 ALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPD-ATIWGALLGSCRIHGH 887 (1076)
Q Consensus 809 ~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd-~~~~~~Ll~a~~~~g~ 887 (1076)
.+...+...|++++|.+++++..+...-.. .|. ...+..+...+...|+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------------------------------~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAG------------------------------DVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHT------------------------------CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcC------------------------------CHHHHHHHHHHHHHHhCCCc
Confidence 444445555555555555544432100000 111 1122333344444444
Q ss_pred ---chHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 888 ---LEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 888 ---~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
.++|...+++. ...|.....+..|+.+|.+.|++++|.+.+++..+
T Consensus 319 ~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 319 EEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444444443 22223334555666666666666666666666543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.1e-09 Score=121.02 Aligned_cols=189 Identities=8% Similarity=-0.016 Sum_probs=132.9
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC---CCC-HHHHH
Q 038364 744 LIDMYSKSGNLKSAREVFRKSAN-----KT----LASWNCMIMGFAIYGNGKEAILLFHELLET--GF---QPD-AITFT 808 (1076)
Q Consensus 744 Li~~y~k~G~~~~A~~vf~~m~~-----~d----~~s~n~li~~~~~~g~~~~Al~l~~~M~~~--g~---~Pd-~~t~~ 808 (1076)
....|...|++++|.+.|++..+ +| ..+|..+...|...|++++|+..+++..+. .. .|. ..++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 55566677777777777766543 22 246677777778888888888777776642 01 111 23566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----cccHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 038364 809 ALLAACKNSGLVEEGWKYFDSMSTDYNIIPT----IEHYSCMVDLLGKAGYLDEAWDFIRTM-------PFKPD-ATIWG 876 (1076)
Q Consensus 809 ~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~----~~~y~~li~~l~r~G~l~eA~~l~~~m-------~~~pd-~~~~~ 876 (1076)
.+...|...|++++|.+.|++..+...-.++ ...+..+...|.+.|++++|.+.+++. ...|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6677788888888888888776643111111 236778888888999998888888775 22143 45788
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhcC-----CCCCchhHHHHHHHHHHcCC---hHHHHHHHHHH
Q 038364 877 ALLGSCRIHGHLEYAEIASRRLFKL-----EPCNSANYNLMMNLLAMSNR---WEDVERLRHSM 932 (1076)
Q Consensus 877 ~Ll~a~~~~g~~e~A~~~~~~l~~l-----~P~~~~~y~~L~~~y~~~G~---~~eA~~~~~~m 932 (1076)
.+...+...|++++|...+++++++ +|.....+..++.+|...|+ +++|..++++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 8889999999999999999999886 33334446789999999999 88888887765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.1e-09 Score=133.00 Aligned_cols=161 Identities=20% Similarity=0.230 Sum_probs=129.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHH
Q 038364 769 LASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCM 846 (1076)
Q Consensus 769 ~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~l 846 (1076)
..+|+.|...|.+.|++++|++.|++.++ +.|+. ..+..+..++.+.|++++|.+.|++..+. .|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 34677777777777777777777777777 45654 46777777788888888888888877653 454 5677888
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHH
Q 038364 847 VDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWED 924 (1076)
Q Consensus 847 i~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~e 924 (1076)
..+|.+.|++++|++.+++. .+.| +...|..+..++...|++++|+..++++++++|+++.+|..|+.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88888888888888888775 3444 466899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 038364 925 VERLRHSMDE 934 (1076)
Q Consensus 925 A~~~~~~m~~ 934 (1076)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.04 E-value=5e-09 Score=106.42 Aligned_cols=166 Identities=11% Similarity=0.026 Sum_probs=140.0
Q ss_pred ChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 038364 737 DAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD-AITFTALLA 812 (1076)
Q Consensus 737 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd-~~t~~~ll~ 812 (1076)
+..+|..|...|.+.|++++|.+.|++..+ .+...|..+...|.+.|++++|+..+++.... .|+ ...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 567888899999999999999999997653 46678999999999999999999999999874 444 445666667
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCchH
Q 038364 813 ACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFK-PDATIWGALLGSCRIHGHLEY 890 (1076)
Q Consensus 813 a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~-pd~~~~~~Ll~a~~~~g~~e~ 890 (1076)
.+...++++++.+.+....+. .+.+...+..+...|.+.|++++|++.+++. ... .+..+|..+..++...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 788999999999999988764 2234667889999999999999999999886 333 457789999999999999999
Q ss_pred HHHHHHHHhcCCCCCc
Q 038364 891 AEIASRRLFKLEPCNS 906 (1076)
Q Consensus 891 A~~~~~~l~~l~P~~~ 906 (1076)
|+..++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999763
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.01 E-value=2e-08 Score=111.55 Aligned_cols=211 Identities=7% Similarity=0.020 Sum_probs=169.1
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHHHHHh-------hcCCH-------HHHHHHHHhcCC----CChHHHHHHHHHHHH
Q 038364 720 QNGKEIHCLCLKNGFIKDAYVATGLIDMYS-------KSGNL-------KSAREVFRKSAN----KTLASWNCMIMGFAI 781 (1076)
Q Consensus 720 ~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~-------k~G~~-------~~A~~vf~~m~~----~d~~s~n~li~~~~~ 781 (1076)
++|..+++.+++. ...++..|..++..+. +.|++ ++|..+|++..+ .+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 4667788887774 2345677777777775 45885 999999997654 245689999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHH-hcCCHH
Q 038364 782 YGNGKEAILLFHELLETGFQPDAI--TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLG-KAGYLD 857 (1076)
Q Consensus 782 ~g~~~~Al~l~~~M~~~g~~Pd~~--t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~-r~G~l~ 857 (1076)
.|+.++|..+|++..+ +.|+.. .|..+...+.+.|++++|.++|++..+. .| +...|...+.... ..|+.+
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS---TTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999998 567643 7888888899999999999999999763 33 3444544444322 369999
Q ss_pred HHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcC---CCC-CchhHHHHHHHHHHcCChHHHHHHHHH
Q 038364 858 EAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKL---EPC-NSANYNLMMNLLAMSNRWEDVERLRHS 931 (1076)
Q Consensus 858 eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l---~P~-~~~~y~~L~~~y~~~G~~~eA~~~~~~ 931 (1076)
+|.++|++. . .+.+...|..++..+...|+.++|+.+++++++. .|+ ....+..++..+.+.|++++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999987 2 2346789999999999999999999999999985 554 566788999999999999999999999
Q ss_pred HHhCC
Q 038364 932 MDEVG 936 (1076)
Q Consensus 932 m~~~g 936 (1076)
+.+..
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 87654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.00 E-value=6e-09 Score=104.79 Aligned_cols=158 Identities=13% Similarity=0.053 Sum_probs=97.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcC
Q 038364 775 MIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAG 854 (1076)
Q Consensus 775 li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G 854 (1076)
+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.++++++.+. ...+...+..+...|.+.|
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQ 90 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhc
Confidence 3334444444444444444433311 112233444444444455555555555444432 1122344555555666666
Q ss_pred CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 855 YLDEAWDFIRTMP--FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 855 ~l~eA~~l~~~m~--~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
++++|.+.++++. .+.+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.+++.
T Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 91 KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666665541 23456677788888888888888888888888888888888999999999999999999988887
Q ss_pred HhC
Q 038364 933 DEV 935 (1076)
Q Consensus 933 ~~~ 935 (1076)
.+.
T Consensus 171 ~~~ 173 (186)
T 3as5_A 171 NEL 173 (186)
T ss_dssp HHH
T ss_pred HHc
Confidence 654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=9.9e-10 Score=121.07 Aligned_cols=243 Identities=14% Similarity=0.090 Sum_probs=151.2
Q ss_pred ccchhhhhhhhhhcCChhHHHHHHHHhHhc-------CCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhc------CC
Q 038364 633 LVSWNSLVSGYSIWGQSKEALVIIHHMKNS-------GIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQE------DI 699 (1076)
Q Consensus 633 ~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~-------gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~------gi 699 (1076)
..++..+...|...|++++|..+|+++.+. ........|..+...|...|++++|.+.+++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345678888999999999999999998862 23345677889999999999999999999998764 22
Q ss_pred CC-ChhhHHHHHHHHhcCCCchhHHHHHHHHHHc------CCCC-ChhhHHHHHHHHhhcCCHHHHHHHHHhcCCC----
Q 038364 700 KP-NSTTMSSLLQTCGGLGLLQNGKEIHCLCLKN------GFIK-DAYVATGLIDMYSKSGNLKSAREVFRKSANK---- 767 (1076)
Q Consensus 700 ~p-d~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~------g~~~-d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~---- 767 (1076)
.| ...++..+...+...|++++|...+..+++. +..+ ....+..+...|.+.|++++|.+.|++..+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 23 3567888888999999999999999888764 1112 2345566666666777777766666554321
Q ss_pred ----C---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCc
Q 038364 768 ----T---LASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTI 840 (1076)
Q Consensus 768 ----d---~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~ 840 (1076)
+ ...|..+...|...|++++|++.|+++.+. .|+.. .....+..
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~---------------------------~~~~~~~~ 237 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR--AHERE---------------------------FGSVDDEN 237 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHHH---------------------------HC------
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHhc---------------------------CCCCCcch
Confidence 1 124455555555555555555555555431 00000 00011111
Q ss_pred -------ccHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC
Q 038364 841 -------EHYSCMVDLLGKAGYLDEAWDFIRTMP-FKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC 904 (1076)
Q Consensus 841 -------~~y~~li~~l~r~G~l~eA~~l~~~m~-~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~ 904 (1076)
..+..+...+...+.+.+|...++... ..| +..+|..+..+|...|++++|...+++++++.|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 111222333444555556666666653 233 3457888999999999999999999999988775
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.5e-07 Score=107.15 Aligned_cols=224 Identities=13% Similarity=0.038 Sum_probs=141.1
Q ss_pred HHHhcCCCchhHHHHHHHHHHcCCC-CC----hhhHHHHHHHHhhcCCHHHHHHHHHhcCC-------C----ChHHHHH
Q 038364 711 QTCGGLGLLQNGKEIHCLCLKNGFI-KD----AYVATGLIDMYSKSGNLKSAREVFRKSAN-------K----TLASWNC 774 (1076)
Q Consensus 711 ~a~~~~g~~~~a~~i~~~~~~~g~~-~d----~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-------~----d~~s~n~ 774 (1076)
..+...|+++.|...+....+..-. .+ ...+..+...|...|++++|.+.+++... + ....+..
T Consensus 61 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 140 (373)
T 1hz4_A 61 EVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI 140 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHH
Confidence 3444455555555555444432100 01 12345566777777887777777765432 1 1234556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCC--C--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHH-----H
Q 038364 775 MIMGFAIYGNGKEAILLFHELLETGFQ--P--DAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYS-----C 845 (1076)
Q Consensus 775 li~~~~~~g~~~~Al~l~~~M~~~g~~--P--d~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~-----~ 845 (1076)
+...+...|++++|...+++..+..-. | ...++..+...+...|++++|..++++......-......+. .
T Consensus 141 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 220 (373)
T 1hz4_A 141 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 220 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHH
Confidence 677778888888888888887653211 1 124566666677888888888888887754311111111122 2
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC------chhHHHHH
Q 038364 846 MVDLLGKAGYLDEAWDFIRTMP-FKPD-----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN------SANYNLMM 913 (1076)
Q Consensus 846 li~~l~r~G~l~eA~~l~~~m~-~~pd-----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~------~~~y~~L~ 913 (1076)
.+..+...|++++|...+++.. ..|. ...+..+...+...|++++|...++++++..+.. ...+..++
T Consensus 221 ~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la 300 (373)
T 1hz4_A 221 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 300 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 3344778899999988888863 2221 2356677788888899999999998887653321 24677889
Q ss_pred HHHHHcCChHHHHHHHHHHHh
Q 038364 914 NLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 914 ~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
.+|...|+.++|.+.+++..+
T Consensus 301 ~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 301 QLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999998888754
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.3e-08 Score=105.37 Aligned_cols=203 Identities=10% Similarity=0.021 Sum_probs=112.2
Q ss_pred ChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHH
Q 038364 702 NSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMG 778 (1076)
Q Consensus 702 d~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~ 778 (1076)
|...+......+...|++++|...+..+++..-.++...+..+...|.+.|++++|.+.|++..+ .+...|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 34555555566666666666666666666643324445555566666666666666666665442 233456666666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC---cccHHHHH
Q 038364 779 FAIYGNGKEAILLFHELLETGFQPDAI--------TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT---IEHYSCMV 847 (1076)
Q Consensus 779 ~~~~g~~~~Al~l~~~M~~~g~~Pd~~--------t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~---~~~y~~li 847 (1076)
|...|++++|+..|++..+ ..|+.. .|..+-..+...|++++|.+.|++..+ +.|+ ...|..+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 6666666666666666665 334322 244444455566666666666666543 2343 33455555
Q ss_pred HHHHhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 038364 848 DLLGKAGYL--DEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLL 916 (1076)
Q Consensus 848 ~~l~r~G~l--~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y 916 (1076)
..|...|+. ++|..+. ..+...+..+. ....+++++|+..++++++++|+++.....+..+.
T Consensus 161 ~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 555444432 2221111 11222222222 22344568888888888888888876666665543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.90 E-value=3e-08 Score=104.52 Aligned_cols=188 Identities=11% Similarity=-0.032 Sum_probs=107.8
Q ss_pred ChhhHHHHHHHHhhcCCHHHHHHHHHhcCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 038364 737 DAYVATGLIDMYSKSGNLKSAREVFRKSAN----KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALL 811 (1076)
Q Consensus 737 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll 811 (1076)
|+..+..+...|.+.|++++|.+.|++..+ ++...|..+...+...|++++|+..|++..+ ..|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 445566666666677777777776665432 4555555566666667777777777766665 44544 3455555
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCC-c-------ccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHH
Q 038364 812 AACKNSGLVEEGWKYFDSMSTDYNIIPT-I-------EHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD---ATIWGALL 879 (1076)
Q Consensus 812 ~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~-------~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd---~~~~~~Ll 879 (1076)
..+...|++++|.+.+++..+. .|+ . ..|..+...+.+.|++++|.+.+++. ...|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 5666666777776666666543 232 2 33555555666666666666666554 34444 23455555
Q ss_pred HHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 880 GSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 880 ~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
..+.. .+...++++..+.+.+...|..+ .....+.+++|.+.+++..+..
T Consensus 161 ~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 44432 33444555555555443333322 2333455689999998886543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.89 E-value=3e-08 Score=99.61 Aligned_cols=168 Identities=13% Similarity=-0.001 Sum_probs=141.7
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038364 738 AYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAAC 814 (1076)
Q Consensus 738 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~ 814 (1076)
...+..+...|...|++++|.+.|+++.+ .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566788889999999999999998875 356788899999999999999999999998842 33556778888889
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHH
Q 038364 815 KNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAE 892 (1076)
Q Consensus 815 ~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~ 892 (1076)
...|++++|.++++++.+. .+.+...+..+...|.+.|++++|.+.+++. . .+.+..+|..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998764 2345678888999999999999999999886 2 3346778999999999999999999
Q ss_pred HHHHHHhcCCCCCchh
Q 038364 893 IASRRLFKLEPCNSAN 908 (1076)
Q Consensus 893 ~~~~~l~~l~P~~~~~ 908 (1076)
..+++++++.|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999998887543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.3e-08 Score=115.37 Aligned_cols=208 Identities=10% Similarity=0.002 Sum_probs=118.8
Q ss_pred hhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCCh-hHHHHHHHHHhhcCCCC-ChhhHHHHHHHHhcCCCchhHHHHH
Q 038364 649 SKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENY-RESLKFFIQMQQEDIKP-NSTTMSSLLQTCGGLGLLQNGKEIH 726 (1076)
Q Consensus 649 ~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~-~eAl~l~~~m~~~gi~p-d~~t~~~lL~a~~~~g~~~~a~~i~ 726 (1076)
++++...+++.... ...+...|..+...|...|++ ++|++.|++..+. .| +...|..+..++...|++++|.+.+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34444455444332 122455556666666666666 6666666666542 23 2445555555555555555555555
Q ss_pred HHHHHcCCCCChhhHHHHHHHHhhc---------CCHHHHHHHHHhcC---CCChHHHHHHHHHHHHc--------CCHH
Q 038364 727 CLCLKNGFIKDAYVATGLIDMYSKS---------GNLKSAREVFRKSA---NKTLASWNCMIMGFAIY--------GNGK 786 (1076)
Q Consensus 727 ~~~~~~g~~~d~~~~~~Li~~y~k~---------G~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~--------g~~~ 786 (1076)
..+++ ..|+...+..+...|... |++++|.+.|++.. ..+...|..+...|... |+++
T Consensus 161 ~~al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 161 SGALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 55555 234445555566666666 66666666666543 23455666666666666 6677
Q ss_pred HHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHH
Q 038364 787 EAILLFHELLETGFQP----DAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWD 861 (1076)
Q Consensus 787 ~Al~l~~~M~~~g~~P----d~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~ 861 (1076)
+|+..|++..+ +.| +...+..+..++...|++++|.+.|++..+. .|+ ...+..+..++...|++++|.+
T Consensus 239 ~A~~~~~~al~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 239 QALSAYAQAEK--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL---DPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHH--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776666 344 4455666666666667777777766666543 233 3455566666666666666665
Q ss_pred HHHhC
Q 038364 862 FIRTM 866 (1076)
Q Consensus 862 l~~~m 866 (1076)
.+.++
T Consensus 314 ~~~~~ 318 (474)
T 4abn_A 314 SKGKT 318 (474)
T ss_dssp HTTTC
T ss_pred Hhccc
Confidence 55443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.9e-07 Score=106.87 Aligned_cols=158 Identities=8% Similarity=0.014 Sum_probs=76.0
Q ss_pred HHHHhcCCChhHHHHHHHHHhhcCC-CCC----hhhHHHHHHHHhcCCCchhHHHHHHHHHHcCC-----CC-ChhhHHH
Q 038364 675 ISGSLQNENYRESLKFFIQMQQEDI-KPN----STTMSSLLQTCGGLGLLQNGKEIHCLCLKNGF-----IK-DAYVATG 743 (1076)
Q Consensus 675 I~~~~~~g~~~eAl~l~~~m~~~gi-~pd----~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~-----~~-d~~~~~~ 743 (1076)
...+...|++++|++.|++..+.-. .+| ..++..+...+...|+++.|...+..+++..- .+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445667777777777777654211 122 22344444555555555555555554443200 00 1234445
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCC-HHHHHHH
Q 038364 744 LIDMYSKSGNLKSAREVFRKSAN-----KT----LASWNCMIMGFAIYGNGKEAILLFHELLET---GFQPD-AITFTAL 810 (1076)
Q Consensus 744 Li~~y~k~G~~~~A~~vf~~m~~-----~d----~~s~n~li~~~~~~g~~~~Al~l~~~M~~~---g~~Pd-~~t~~~l 810 (1076)
+...|...|++++|.+.|++..+ .+ ..+++.+...|...|++++|+..|++..+. ...|+ ..++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 55555566666665555544321 11 124445555555555555555555554430 00111 2334444
Q ss_pred HHHHHhcCCHHHHHHHHHHhhh
Q 038364 811 LAACKNSGLVEEGWKYFDSMST 832 (1076)
Q Consensus 811 l~a~~~~g~~~eA~~~~~~m~~ 832 (1076)
...+.+.|+.++|.+++++..+
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 4445555555555555555443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.81 E-value=9.6e-08 Score=109.33 Aligned_cols=223 Identities=11% Similarity=-0.040 Sum_probs=166.0
Q ss_pred HHHhcCCCchhHHHHHHHHHHcCCC-C----ChhhHHHHHHHHhhcCCHHHHHHHHHhcCC-----CC-----hHHHHHH
Q 038364 711 QTCGGLGLLQNGKEIHCLCLKNGFI-K----DAYVATGLIDMYSKSGNLKSAREVFRKSAN-----KT-----LASWNCM 775 (1076)
Q Consensus 711 ~a~~~~g~~~~a~~i~~~~~~~g~~-~----d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d-----~~s~n~l 775 (1076)
..+...|++++|...+..+.+..-. + ...++..+...|...|+++.|...+++..+ .+ ..+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 3456889999999999998864211 2 245778899999999999999988876542 12 3478889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC---CCCCCcccHHHHH
Q 038364 776 IMGFAIYGNGKEAILLFHELLET----GFQPD-AITFTALLAACKNSGLVEEGWKYFDSMSTDY---NIIPTIEHYSCMV 847 (1076)
Q Consensus 776 i~~~~~~g~~~~Al~l~~~M~~~----g~~Pd-~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~---g~~p~~~~y~~li 847 (1076)
...|...|++++|++.|++..+. +-.+. ..++..+...+...|++++|.++|++..+.. +.......+..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 99999999999999999988752 11111 2367777788999999999999999887611 1122256788899
Q ss_pred HHHHhcCCHHHHHHHHHhC----CC--CCCH-HHHHHHHHHHHHcCC---chHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 848 DLLGKAGYLDEAWDFIRTM----PF--KPDA-TIWGALLGSCRIHGH---LEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 848 ~~l~r~G~l~eA~~l~~~m----~~--~pd~-~~~~~Ll~a~~~~g~---~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
..|.+.|+.++|.+.+++. +. .|.. ..+..+...+...++ +++|...+++. ...|.....+..++.+|.
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHH
Confidence 9999999999999999885 11 2332 345555556667777 77777777762 233444567889999999
Q ss_pred HcCChHHHHHHHHHHHh
Q 038364 918 MSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 918 ~~G~~~eA~~~~~~m~~ 934 (1076)
..|++++|.+.+++..+
T Consensus 348 ~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 99999999999988743
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.78 E-value=4.3e-08 Score=105.92 Aligned_cols=221 Identities=18% Similarity=0.170 Sum_probs=156.7
Q ss_pred hcCCCchhHHHHHHHHHHc-------CCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC-------C----ChHHHHHH
Q 038364 714 GGLGLLQNGKEIHCLCLKN-------GFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN-------K----TLASWNCM 775 (1076)
Q Consensus 714 ~~~g~~~~a~~i~~~~~~~-------g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-------~----d~~s~n~l 775 (1076)
...|++++|...++..++. .......++..+...|...|++++|.+.|++..+ + ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4568888888888877653 1122466788899999999999999999987542 1 23578889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcC-----CCCC-Cccc
Q 038364 776 IMGFAIYGNGKEAILLFHELLET------GFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDY-----NIIP-TIEH 842 (1076)
Q Consensus 776 i~~~~~~g~~~~Al~l~~~M~~~------g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~-----g~~p-~~~~ 842 (1076)
...|...|++++|+..|++..+. .-.|+. .++..+...+...|++++|.++++++.+.. +-.| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998863 112433 467778888999999999999999887531 1122 2557
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHHcCCchHHH------HHHHHHhcCCCCC
Q 038364 843 YSCMVDLLGKAGYLDEAWDFIRTMP----------FKPD-ATIWGALLGSCRIHGHLEYAE------IASRRLFKLEPCN 905 (1076)
Q Consensus 843 y~~li~~l~r~G~l~eA~~l~~~m~----------~~pd-~~~~~~Ll~a~~~~g~~e~A~------~~~~~l~~l~P~~ 905 (1076)
+..+...|.+.|++++|.+++++.. ..+. ...|..+.......+....+. ..++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8889999999999999999998751 1222 234444444444433333332 2233233334555
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 906 SANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 906 ~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
...+..++.+|.+.|++++|.+.+++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67899999999999999999999998754
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.78 E-value=3.2e-07 Score=104.40 Aligned_cols=269 Identities=9% Similarity=-0.049 Sum_probs=152.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCcc----chhhhhhhhhhcCChhHHHHHHHHhHhcCC-CCc----hHHHHH
Q 038364 603 SLISGYCFKGLFVNAKKMLNQMEEEEIKPDLV----SWNSLVSGYSIWGQSKEALVIIHHMKNSGI-YPN----VVTWTS 673 (1076)
Q Consensus 603 ~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~----t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi-~pd----~~ty~~ 673 (1076)
.....+...|++++|...+++.....-..+.. .++.+...|...|++++|.+.+++..+... .++ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445667788888888888876643111111 344555666677777777777776654100 011 122344
Q ss_pred HHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCC--C-ChhhHHHHHHHHhh
Q 038364 674 LISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFI--K-DAYVATGLIDMYSK 750 (1076)
Q Consensus 674 LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~--~-d~~~~~~Li~~y~k 750 (1076)
+...+...|++++|.+.+++..... .+.+.. | ....+..+...|..
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~~~la~~~~~ 147 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLI-------------------------------NEQHLEQLPMHEFLVRIRAQLLWA 147 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHTTCTTSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhccccCcHHHHHHHHHHHHHHH
Confidence 5555666666666666666554310 001111 1 12334445566666
Q ss_pred cCCHHHHHHHHHhcCC--C------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHH-----HHHHHHHh
Q 038364 751 SGNLKSAREVFRKSAN--K------TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFT-----ALLAACKN 816 (1076)
Q Consensus 751 ~G~~~~A~~vf~~m~~--~------d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~-----~ll~a~~~ 816 (1076)
.|++++|.+.+++... + ...+|..+...+...|++++|...+++.....-.++. ..+. .....+..
T Consensus 148 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (373)
T 1hz4_A 148 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM 227 (373)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH
Confidence 6666666666654321 0 1235666677777778888887777776643111111 1111 22233667
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCC---cccHHHHHHHHHhcCCHHHHHHHHHhCC-------CCCCHH-HHHHHHHHHHHc
Q 038364 817 SGLVEEGWKYFDSMSTDYNIIPT---IEHYSCMVDLLGKAGYLDEAWDFIRTMP-------FKPDAT-IWGALLGSCRIH 885 (1076)
Q Consensus 817 ~g~~~eA~~~~~~m~~~~g~~p~---~~~y~~li~~l~r~G~l~eA~~l~~~m~-------~~pd~~-~~~~Ll~a~~~~ 885 (1076)
.|+.++|..+++..... ...+. ...+..+..++...|+.++|.+.+++.. ..++.. .+..+..++...
T Consensus 228 ~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 306 (373)
T 1hz4_A 228 TGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 306 (373)
T ss_dssp TTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHh
Confidence 88888888888776542 11111 1134567777888888888888777651 111222 455566778888
Q ss_pred CCchHHHHHHHHHhcCCC
Q 038364 886 GHLEYAEIASRRLFKLEP 903 (1076)
Q Consensus 886 g~~e~A~~~~~~l~~l~P 903 (1076)
|+.++|...+++++++.+
T Consensus 307 g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 307 GRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999988888876543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.4e-07 Score=103.85 Aligned_cols=164 Identities=9% Similarity=-0.080 Sum_probs=98.0
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCC------
Q 038364 740 VATGLIDMYSKSGNLKSAREVFRKSAN-----KT----LASWNCMIMGFAIY-GNGKEAILLFHELLETGFQPD------ 803 (1076)
Q Consensus 740 ~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d----~~s~n~li~~~~~~-g~~~~Al~l~~~M~~~g~~Pd------ 803 (1076)
+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|++..+. .|+
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~ 156 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHH
Confidence 445555556666666666555554331 11 23566777777775 8888888888777652 221
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcc-----cHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH---
Q 038364 804 -AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIE-----HYSCMVDLLGKAGYLDEAWDFIRTM-PFKPDAT--- 873 (1076)
Q Consensus 804 -~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~-----~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd~~--- 873 (1076)
..++..+...+...|++++|..+|++..+...-.+... .|..+..++...|++++|...+++. .+.|+..
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 23566667777888888888888887765321111111 3566677777788888888888775 3344321
Q ss_pred ---HHHHHHHHHH--HcCCchHHHHHHHHHhcCCCCC
Q 038364 874 ---IWGALLGSCR--IHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 874 ---~~~~Ll~a~~--~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
.+..++.++. ..+++++|+..++++.+++|.+
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 2344455554 3456777777777777777754
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.1e-07 Score=117.69 Aligned_cols=162 Identities=17% Similarity=0.214 Sum_probs=136.9
Q ss_pred ChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 038364 737 DAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLA 812 (1076)
Q Consensus 737 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~ 812 (1076)
+...++.|...|.+.|++++|.+.|++..+ .+...|+.+...|.+.|++++|++.|++..+ +.|+. ..|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 356788899999999999999999987653 4567899999999999999999999999988 56764 57888888
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCch
Q 038364 813 ACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLE 889 (1076)
Q Consensus 813 a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e 889 (1076)
++...|++++|.+.|++..+. .|+ ...|..+..+|.+.|++++|++.+++. ...| +...|..|..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 899999999999999988753 455 678899999999999999999999886 4455 4668999999999999999
Q ss_pred HHHHHHHHHhcCCC
Q 038364 890 YAEIASRRLFKLEP 903 (1076)
Q Consensus 890 ~A~~~~~~l~~l~P 903 (1076)
+|++.+++++++.|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99999999887644
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.67 E-value=4.4e-07 Score=97.80 Aligned_cols=182 Identities=10% Similarity=-0.007 Sum_probs=124.1
Q ss_pred ChhhHHHHHHHHhhcCCHHHHHHHHHhcCCC---C---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH-HHHH
Q 038364 737 DAYVATGLIDMYSKSGNLKSAREVFRKSANK---T---LASWNCMIMGFAIYGNGKEAILLFHELLETGF-QPDA-ITFT 808 (1076)
Q Consensus 737 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~---d---~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~-~Pd~-~t~~ 808 (1076)
+...+-.+...+.+.|++++|.+.|+++.+. + ...|..+...|.+.|++++|+..|++..+..- .|+. ..+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 4555666777778888888888888877642 2 45667777888888888888888888877311 1222 3444
Q ss_pred HHHHHHHh--------cCCHHHHHHHHHHhhhcCCCCCCc-ccHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 038364 809 ALLAACKN--------SGLVEEGWKYFDSMSTDYNIIPTI-EHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALL 879 (1076)
Q Consensus 809 ~ll~a~~~--------~g~~~eA~~~~~~m~~~~g~~p~~-~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll 879 (1076)
.+..++.. .|++++|...|+++.+.+ |+. .....+..+....+.+ ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 55555666 778888888888776642 332 2222221111111111 11256677
Q ss_pred HHHHHcCCchHHHHHHHHHhcCCCCC---chhHHHHHHHHHHc----------CChHHHHHHHHHHHhCC
Q 038364 880 GSCRIHGHLEYAEIASRRLFKLEPCN---SANYNLMMNLLAMS----------NRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 880 ~a~~~~g~~e~A~~~~~~l~~l~P~~---~~~y~~L~~~y~~~----------G~~~eA~~~~~~m~~~g 936 (1076)
..+...|+++.|+..++++++..|++ +..+..++.+|... |++++|.+.+++..+..
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 88999999999999999999999985 45789999999877 99999999999986543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-07 Score=104.72 Aligned_cols=199 Identities=12% Similarity=0.033 Sum_probs=143.4
Q ss_pred chhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHHcCCHHHHH
Q 038364 719 LQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN-----KT----LASWNCMIMGFAIYGNGKEAI 789 (1076)
Q Consensus 719 ~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d----~~s~n~li~~~~~~g~~~~Al 789 (1076)
+++|...+..+ ...|...|++++|.+.|++..+ .+ ..+|+.+...|...|++++|+
T Consensus 33 ~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 33 FEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 66666666554 4567888999999988876542 12 357899999999999999999
Q ss_pred HHHHHHHHC----CCCCC-HHHHHHHHHHHHhc-CCHHHHHHHHHHhhhcCCCCCC----cccHHHHHHHHHhcCCHHHH
Q 038364 790 LLFHELLET----GFQPD-AITFTALLAACKNS-GLVEEGWKYFDSMSTDYNIIPT----IEHYSCMVDLLGKAGYLDEA 859 (1076)
Q Consensus 790 ~l~~~M~~~----g~~Pd-~~t~~~ll~a~~~~-g~~~eA~~~~~~m~~~~g~~p~----~~~y~~li~~l~r~G~l~eA 859 (1076)
..|++..+. |-.+. ..++..+...|... |++++|...|++..+...-..+ ...+..+...|.+.|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 999988762 21111 24677888889886 9999999999988753211111 34688899999999999999
Q ss_pred HHHHHhC-CCCCC---H-----HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchh-----HHHHHHHHH--HcCChH
Q 038364 860 WDFIRTM-PFKPD---A-----TIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSAN-----YNLMMNLLA--MSNRWE 923 (1076)
Q Consensus 860 ~~l~~~m-~~~pd---~-----~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~-----y~~L~~~y~--~~G~~~ 923 (1076)
.+.+++. ...|+ . ..|..+..++...|+++.|+..+++.++++|+.... +..+...|. ..++++
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999986 22222 1 156777888999999999999999999999986543 334556664 457788
Q ss_pred HHHHHHHHH
Q 038364 924 DVERLRHSM 932 (1076)
Q Consensus 924 eA~~~~~~m 932 (1076)
+|.+.++++
T Consensus 258 ~A~~~~~~~ 266 (292)
T 1qqe_A 258 EHCKEFDNF 266 (292)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHhccC
Confidence 988888665
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.63 E-value=5.4e-07 Score=97.14 Aligned_cols=223 Identities=14% Similarity=0.100 Sum_probs=125.3
Q ss_pred hcCChhHHHHHHHHhHhc-------CCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhc------CCCCChhhHHHHHH
Q 038364 645 IWGQSKEALVIIHHMKNS-------GIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQE------DIKPNSTTMSSLLQ 711 (1076)
Q Consensus 645 k~g~~~~A~~lf~~m~~~-------gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~------gi~pd~~t~~~lL~ 711 (1076)
..|++++|..+|++..+. ........|..+...|...|++++|++.+++..+. +-.|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---------- 82 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP---------- 82 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH----------
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch----------
Confidence 456667777666665431 11223456666777777777777777777766532 1111
Q ss_pred HHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC-------C----ChHHHHHHHHHHH
Q 038364 712 TCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN-------K----TLASWNCMIMGFA 780 (1076)
Q Consensus 712 a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-------~----d~~s~n~li~~~~ 780 (1076)
....++..+...|...|++++|.+.|++..+ + ....|..+...|.
T Consensus 83 ------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 138 (283)
T 3edt_B 83 ------------------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ 138 (283)
T ss_dssp ------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence 1223444555555555555555555554321 1 1235666667777
Q ss_pred HcCCHHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcC------CCCCCc-ccHHHH
Q 038364 781 IYGNGKEAILLFHELLET------GFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDY------NIIPTI-EHYSCM 846 (1076)
Q Consensus 781 ~~g~~~~Al~l~~~M~~~------g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~------g~~p~~-~~y~~l 846 (1076)
..|++++|+..|++..+. +-.|+. .++..+...+...|++++|.+++++..+.. ...+.. ..|..+
T Consensus 139 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 218 (283)
T 3edt_B 139 NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHA 218 (283)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 777777777777776653 113332 356667777778888888888887766420 122332 233333
Q ss_pred HHHHHhc------CCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcC
Q 038364 847 VDLLGKA------GYLDEAWDFIRTMP-FKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKL 901 (1076)
Q Consensus 847 i~~l~r~------G~l~eA~~l~~~m~-~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l 901 (1076)
...+... ..+.++...++... ..|+ ..+|..+...+...|++++|...+++++++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 219 EEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3333332 23445555555553 2233 347888889999999999999999998875
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.63 E-value=2.9e-07 Score=86.62 Aligned_cols=93 Identities=15% Similarity=0.173 Sum_probs=62.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcC
Q 038364 843 YSCMVDLLGKAGYLDEAWDFIRTMP--FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSN 920 (1076)
Q Consensus 843 y~~li~~l~r~G~l~eA~~l~~~m~--~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G 920 (1076)
+..++..+.+.|++++|.++++++. .+.+...|..+...+...|++++|...++++++..|+++..+..++.+|.+.|
T Consensus 38 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 117 (136)
T 2fo7_A 38 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 117 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc
Confidence 3344444444444444444444431 12345566677777777788888888888888888877778888888888888
Q ss_pred ChHHHHHHHHHHHhC
Q 038364 921 RWEDVERLRHSMDEV 935 (1076)
Q Consensus 921 ~~~eA~~~~~~m~~~ 935 (1076)
++++|.+.++++.+.
T Consensus 118 ~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 118 DYDEAIEYYQKALEL 132 (136)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcc
Confidence 888888888877554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.60 E-value=4.8e-07 Score=97.46 Aligned_cols=202 Identities=11% Similarity=0.016 Sum_probs=145.8
Q ss_pred ChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCC---hhhHHHHHHHHhhcCCHHHHHHHHHhcCC--C-C---hHHH
Q 038364 702 NSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKD---AYVATGLIDMYSKSGNLKSAREVFRKSAN--K-T---LASW 772 (1076)
Q Consensus 702 d~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d---~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d---~~s~ 772 (1076)
+...+..+...+...|++++|...+..+++.. +.+ ...+..+...|.+.|++++|...|++..+ | + ...|
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45667777778889999999999999998853 222 56778899999999999999999998764 2 1 3467
Q ss_pred HHHHHHHHH--------cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccH
Q 038364 773 NCMIMGFAI--------YGNGKEAILLFHELLETGFQPDAI-TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHY 843 (1076)
Q Consensus 773 n~li~~~~~--------~g~~~~Al~l~~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y 843 (1076)
..+..++.. .|++++|+..|++..+ ..|+.. .... ...+..+... ....+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a--------------~~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDA--------------TQKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHH--------------HHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHH--------------HHHHHHHHHH-----HHHHH
Confidence 778888888 9999999999999998 356542 1111 1111111110 01225
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHc----------CCchHHHHHHHHHhcCCCCCc--
Q 038364 844 SCMVDLLGKAGYLDEAWDFIRTM-PFKPD----ATIWGALLGSCRIH----------GHLEYAEIASRRLFKLEPCNS-- 906 (1076)
Q Consensus 844 ~~li~~l~r~G~l~eA~~l~~~m-~~~pd----~~~~~~Ll~a~~~~----------g~~e~A~~~~~~l~~l~P~~~-- 906 (1076)
..+...|.+.|++++|...+++. ...|+ ...|..+..++... |++++|+..++++++..|+++
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 56778889999999999988876 22233 34677777777765 889999999999999999985
Q ss_pred -hhHHHHHHHHHHcCChHHH
Q 038364 907 -ANYNLMMNLLAMSNRWEDV 925 (1076)
Q Consensus 907 -~~y~~L~~~y~~~G~~~eA 925 (1076)
.++..+..++.+.|+++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 3455666666666655443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-06 Score=92.28 Aligned_cols=180 Identities=9% Similarity=0.015 Sum_probs=120.4
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHhcCC--CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HH
Q 038364 738 AYVATGLIDMYSKSGNLKSAREVFRKSAN--KT----LASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAI----TF 807 (1076)
Q Consensus 738 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d----~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~----t~ 807 (1076)
...+..+...|.+.|++++|.+.|+++.+ |+ ...|..+..+|.+.|++++|+..|++..+. .|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34455567778888999999998887763 22 246777888888899999999999888873 44432 23
Q ss_pred HHHHHHHHh------------------cCCHHHHHHHHHHhhhcCCCCCCcc-cHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 038364 808 TALLAACKN------------------SGLVEEGWKYFDSMSTDYNIIPTIE-HYSCMVDLLGKAGYLDEAWDFIRTMPF 868 (1076)
Q Consensus 808 ~~ll~a~~~------------------~g~~~eA~~~~~~m~~~~g~~p~~~-~y~~li~~l~r~G~l~eA~~l~~~m~~ 868 (1076)
..+..++.. .|+.++|...|+++.+. .|+.. .+.... +.+.+.+..
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~----~l~~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATK----RLVFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHH----HHHHHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHH----HHHHHHHHH--------
Confidence 333333332 35666666666666543 23321 111111 100000000
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCc---hhHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 038364 869 KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNS---ANYNLMMNLLAMSNRWEDVERLRHSMDEVGV 937 (1076)
Q Consensus 869 ~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~---~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g~ 937 (1076)
......+...+...|+++.|+..++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00123455678899999999999999999999876 5699999999999999999999999977653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.56 E-value=4.9e-06 Score=90.92 Aligned_cols=78 Identities=13% Similarity=0.040 Sum_probs=37.2
Q ss_pred CHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcC----------CCCCchhHHHHHHHHHHcCChH
Q 038364 855 YLDEAWDFIRTMP-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKL----------EPCNSANYNLMMNLLAMSNRWE 923 (1076)
Q Consensus 855 ~l~eA~~l~~~m~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l----------~P~~~~~y~~L~~~y~~~G~~~ 923 (1076)
+.++|..+|+++. ..|+..+-..|++++.+.|++++|+..++.+.+. +|+++.++..++.+....|+
T Consensus 193 ~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk-- 270 (310)
T 3mv2_B 193 TATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL-- 270 (310)
T ss_dssp TTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--
T ss_pred cHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--
Confidence 4444555554441 2233122222333455555555555555554443 35555555555555555554
Q ss_pred HHHHHHHHHHh
Q 038364 924 DVERLRHSMDE 934 (1076)
Q Consensus 924 eA~~~~~~m~~ 934 (1076)
+|.++++++++
T Consensus 271 ~a~~l~~qL~~ 281 (310)
T 3mv2_B 271 DTEDLTNQLVK 281 (310)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.56 E-value=8.7e-07 Score=83.31 Aligned_cols=131 Identities=20% Similarity=0.222 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHH
Q 038364 771 SWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLL 850 (1076)
Q Consensus 771 s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l 850 (1076)
.|..+...+...|++++|+.+|+++.+.. ..+...+..+...+...|++++|.++++++.... ..+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 45666677777777777777777776632 2244556666666777777788877777776531 22345667777788
Q ss_pred HhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC
Q 038364 851 GKAGYLDEAWDFIRTMP--FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC 904 (1076)
Q Consensus 851 ~r~G~l~eA~~l~~~m~--~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~ 904 (1076)
.+.|++++|.+.++++. .+.+..+|..+...+...|++++|...++++++.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 88888888888877762 2345677888888888889999999999888888775
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1e-07 Score=93.71 Aligned_cols=135 Identities=13% Similarity=-0.008 Sum_probs=84.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHH
Q 038364 782 YGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEA 859 (1076)
Q Consensus 782 ~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA 859 (1076)
.|+.++|+..+++... ..|+. ..+..+...|...|++++|.+.|++..+. .|+ ...|..+..+|.+.|++++|
T Consensus 10 ~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 10 KADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp HHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCchHHH
Confidence 3444444444444332 22222 12333444455555555555555555432 232 44556666666666666666
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHH-HHHHhcCCCCCchhHHHHHHHHHHcCC
Q 038364 860 WDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIA-SRRLFKLEPCNSANYNLMMNLLAMSNR 921 (1076)
Q Consensus 860 ~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~-~~~l~~l~P~~~~~y~~L~~~y~~~G~ 921 (1076)
...+++. ...| +..+|..+...+...|+.++|.+. ++++++++|+++.+|.....++.+.|+
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 6666664 2334 466888888889999998776654 589999999999999999999988875
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.55 E-value=5.5e-06 Score=90.51 Aligned_cols=241 Identities=14% Similarity=0.077 Sum_probs=158.6
Q ss_pred hhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhH
Q 038364 643 YSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNG 722 (1076)
Q Consensus 643 y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a 722 (1076)
....|++..+..-...+.. ..++ ..---+.++|...|+++.. ..-.|....+..+. .+...+ +
T Consensus 23 ~fy~G~yq~~i~e~~~~~~--~~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSK--VTDN-TLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSC--CCCH-HHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTTT----C
T ss_pred HHHhhHHHHHHHHHHhcCc--cchH-HHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhccc----H
Confidence 3446777766653322211 1122 2222334666666766531 11223332333333 333322 5
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038364 723 KEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANK-----TLASWNCMIMGFAIYGNGKEAILLFHELLE 797 (1076)
Q Consensus 723 ~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~-----d~~s~n~li~~~~~~g~~~~Al~l~~~M~~ 797 (1076)
...++.+++.+ .++......+..+|...|++++|.+++.+.... +...+-.++..+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 56666665544 345555568889999999999999999987443 345677888999999999999999999988
Q ss_pred CCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCC-
Q 038364 798 TGFQP-----DAITFTALLAA--CKNSG--LVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMP- 867 (1076)
Q Consensus 798 ~g~~P-----d~~t~~~ll~a--~~~~g--~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~- 867 (1076)
..| +..+...+..+ ....| +.++|..+|+++..+ .|+......+..++.+.|++++|++.++.+.
T Consensus 165 --~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 --AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp --HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred --cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 577 35666666666 33334 899999999999765 3442233344458899999999999997652
Q ss_pred C----------CC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchh
Q 038364 868 F----------KP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSAN 908 (1076)
Q Consensus 868 ~----------~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~ 908 (1076)
. .| |+.+...++......|+ .|.++.+++.+..|+++..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 1 14 45566567666667786 8899999999999998643
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=8e-07 Score=97.57 Aligned_cols=173 Identities=9% Similarity=-0.052 Sum_probs=132.1
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 038364 755 KSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTD 833 (1076)
Q Consensus 755 ~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~ 833 (1076)
+...+.++.....+...+..+...+...|+.++|+..|++..+ ..|+. ..+..+...+...|+.++|...++++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 3444444444444555666777788888899999999988887 45654 46777777888899999999998887643
Q ss_pred CCCCCCcccHHH-HHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC--chh
Q 038364 834 YNIIPTIEHYSC-MVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN--SAN 908 (1076)
Q Consensus 834 ~g~~p~~~~y~~-li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~--~~~ 908 (1076)
.|+...... ....+.+.|+.++|.+.+++. .. +.+...+..+...+...|++++|+..++++++.+|++ ...
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 455432222 223366777888888888775 23 3457789999999999999999999999999999988 788
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 038364 909 YNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 909 y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
+..|+.+|...|+.++|...+++.
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHH
Confidence 999999999999999998887764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.51 E-value=4.5e-07 Score=112.40 Aligned_cols=144 Identities=13% Similarity=-0.052 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHH
Q 038364 771 SWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVD 848 (1076)
Q Consensus 771 s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~ 848 (1076)
.|..+...|.+.|++++|+..|++..+ ..|+. ..+..+..++...|++++|.+.|++..+. .|+ ...|..+..
T Consensus 435 ~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~ 509 (681)
T 2pzi_A 435 LPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT---FPGELAPKLALAA 509 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCSHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHH
Confidence 344444444444444444444444444 22322 23333444444444444444444444332 222 334444444
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcC
Q 038364 849 LLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSN 920 (1076)
Q Consensus 849 ~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G 920 (1076)
+|.+.|++++ .+.+++. ...| +...|..+..++...|++++|+..++++++++|++..+|..++.+|...|
T Consensus 510 ~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 510 TAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence 5555555555 4444443 1122 33445555555555555555555555555555555555555555554433
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.47 E-value=5.6e-05 Score=89.48 Aligned_cols=124 Identities=11% Similarity=0.012 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHH
Q 038364 770 ASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAA-CKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVD 848 (1076)
Q Consensus 770 ~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a-~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~ 848 (1076)
..|-..+..+.+++..+.|..+|++. ... ..+...|...... +...++.+.|+.+|+...+.++- ++..+...++
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid 362 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHH
Confidence 45666677776777788888888887 311 1233333321111 12233688888888888775432 2344566777
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHh
Q 038364 849 LLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLF 899 (1076)
Q Consensus 849 ~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~ 899 (1076)
...+.|+.+.|..+|++.. .....|...+.--..+|+.+.+..++++..
T Consensus 363 ~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7778888888888888873 346677777776677777777776666654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.45 E-value=7.2e-05 Score=88.55 Aligned_cols=198 Identities=13% Similarity=0.089 Sum_probs=124.7
Q ss_pred HHHHHhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhc
Q 038364 586 AQEVFDNMKN---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNS 662 (1076)
Q Consensus 586 A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~ 662 (1076)
+..+|++... .+...|-..+.-+.+.|+.++|.++|++.... |+...+.. .|+...+.++. ++.+.+.
T Consensus 198 v~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~ 268 (493)
T 2uy1_A 198 MHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHH
Confidence 4445555443 34667777777788888888888888888876 54432211 23332222222 3332221
Q ss_pred C---------C---CCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHH--HHHHHHhcCCCchhHHHHHHH
Q 038364 663 G---------I---YPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMS--SLLQTCGGLGLLQNGKEIHCL 728 (1076)
Q Consensus 663 g---------i---~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~--~lL~a~~~~g~~~~a~~i~~~ 728 (1076)
- . ......|-..+..+.+.+..+.|..+|.+. ... ..+...|. +.+.... .++.+.|+.+++.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~ 345 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSS 345 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHH
Confidence 0 0 112355777777777788899999999988 321 12333333 2222222 2368889999988
Q ss_pred HHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038364 729 CLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLE 797 (1076)
Q Consensus 729 ~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~ 797 (1076)
.++. +..++..+...++...+.|+.+.|+.+|++.. +....|...+.--..+|+.+.+.++++++..
T Consensus 346 al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 346 GLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8875 33345556667888888899999999999884 4567788888777778888888777777664
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=4.8e-07 Score=88.82 Aligned_cols=119 Identities=14% Similarity=0.025 Sum_probs=100.4
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCch
Q 038364 813 ACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLE 889 (1076)
Q Consensus 813 a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e 889 (1076)
.+...|++++|...+..... ..|+ ...+..+..+|.+.|++++|++.|++. ...| +..+|..+...+...|+++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 34566889999998888753 3444 556778999999999999999999987 3444 5779999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHH-HHHHHh
Q 038364 890 YAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERL-RHSMDE 934 (1076)
Q Consensus 890 ~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~-~~~m~~ 934 (1076)
+|+..++++++++|+++.+|..++.+|.+.|++++|.+. +++..+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887765 466644
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.6e-06 Score=105.09 Aligned_cols=158 Identities=12% Similarity=0.052 Sum_probs=122.9
Q ss_pred cCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 038364 751 SGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD-AITFTALLAACKNSGLVEEGWKY 826 (1076)
Q Consensus 751 ~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd-~~t~~~ll~a~~~~g~~~eA~~~ 826 (1076)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+ ..|+ ...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999988764 3567899999999999999999999999998 4565 46788888889999999999999
Q ss_pred HHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHc---CCchHHHHHHHHHhc
Q 038364 827 FDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFK-PDATIWGALLGSCRIH---GHLEYAEIASRRLFK 900 (1076)
Q Consensus 827 ~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~-pd~~~~~~Ll~a~~~~---g~~e~A~~~~~~l~~ 900 (1076)
+++..+. .|+ ...+..+..+|.+.|++++|.+.+++. ... .+...|..+...+... |+.++|...++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998764 344 678889999999999999999999986 333 4567889999999999 999999999999999
Q ss_pred CCCCCchhHHHHH
Q 038364 901 LEPCNSANYNLMM 913 (1076)
Q Consensus 901 l~P~~~~~y~~L~ 913 (1076)
.+|++...|..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999988888777
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.40 E-value=9.1e-06 Score=84.67 Aligned_cols=162 Identities=7% Similarity=-0.104 Sum_probs=115.7
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHhhhcCCCCCCccc
Q 038364 767 KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSG----LVEEGWKYFDSMSTDYNIIPTIEH 842 (1076)
Q Consensus 767 ~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g----~~~eA~~~~~~m~~~~g~~p~~~~ 842 (1076)
.+..++..+...|...++.++|+++|++..+.| +...+..|-..|.. + +.++|.++|++..+. -++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 355566666666666677777777777776654 33444444444555 5 677777777776542 24556
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHhCC-CCCC---HHHHHHHHHHHHH----cCCchHHHHHHHHHhcCCCCCchhHH
Q 038364 843 YSCMVDLLGK----AGYLDEAWDFIRTMP-FKPD---ATIWGALLGSCRI----HGHLEYAEIASRRLFKLEPCNSANYN 910 (1076)
Q Consensus 843 y~~li~~l~r----~G~l~eA~~l~~~m~-~~pd---~~~~~~Ll~a~~~----~g~~e~A~~~~~~l~~l~P~~~~~y~ 910 (1076)
+..|..+|.. .+++++|.+++++.- ..|+ ...+..|...|.. .+|.++|+..++++.++ |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 6666777766 778888888888763 3342 6778888888887 78899999999999888 66778899
Q ss_pred HHHHHHHHc-C-----ChHHHHHHHHHHHhCCC
Q 038364 911 LMMNLLAMS-N-----RWEDVERLRHSMDEVGV 937 (1076)
Q Consensus 911 ~L~~~y~~~-G-----~~~eA~~~~~~m~~~g~ 937 (1076)
.|+.+|... | ++++|.+.+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999765 3 79999999999877763
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.40 E-value=1.1e-06 Score=86.46 Aligned_cols=102 Identities=11% Similarity=-0.026 Sum_probs=89.8
Q ss_pred CCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHH
Q 038364 835 NIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFK-PDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNL 911 (1076)
Q Consensus 835 g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~-pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~ 911 (1076)
.+.|+ ...+..+...|.+.|++++|.+.|++. ... .+...|..+..++...|++++|+..++++++++|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 44554 557778888999999999999999887 333 467799999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 912 MMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 912 L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
++.+|.+.|++++|.+.+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.37 E-value=3.1e-06 Score=93.73 Aligned_cols=154 Identities=12% Similarity=-0.002 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----cc
Q 038364 771 SWNCMIMGFAIYGNGKEAILLFHELLETG---FQPD--AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT----IE 841 (1076)
Q Consensus 771 s~n~li~~~~~~g~~~~Al~l~~~M~~~g---~~Pd--~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~----~~ 841 (1076)
+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|.++|++..+.+.-..+ ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 55666677777777777777777655420 1122 2355666666766 8888888888776543111111 35
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchh-----
Q 038364 842 HYSCMVDLLGKAGYLDEAWDFIRTMP-F---KPD----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSAN----- 908 (1076)
Q Consensus 842 ~y~~li~~l~r~G~l~eA~~l~~~m~-~---~pd----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~----- 908 (1076)
.+..+...|.+.|++++|.+.+++.. + .++ ...|..+...+...|++++|...+++.+ ++|.....
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~ 235 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAA 235 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHH
Confidence 67778888889999999988888751 1 122 2256666677778899999999999999 99876533
Q ss_pred HHHHHHHHHHcCChHHHHH
Q 038364 909 YNLMMNLLAMSNRWEDVER 927 (1076)
Q Consensus 909 y~~L~~~y~~~G~~~eA~~ 927 (1076)
...++..| ..|+.+++.+
T Consensus 236 l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 236 LEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHH
Confidence 33445545 5677665555
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.2e-06 Score=86.35 Aligned_cols=156 Identities=11% Similarity=-0.004 Sum_probs=96.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 038364 741 ATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNS 817 (1076)
Q Consensus 741 ~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~ 817 (1076)
...+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++..+ ..|+.. +..+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~-~~~~~~~---- 81 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNS-YKSLIAK---- 81 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHH-HHHHHHH----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChH-HHHHHHH----
Confidence 33455556666666666666665543 2344555555556666666666666555544 223221 1111100
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHH
Q 038364 818 GLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIAS 895 (1076)
Q Consensus 818 g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~ 895 (1076)
+. +.+.+...+|.+.+++. ...| +...|..+...+...|++++|+..+
T Consensus 82 -----------------------------~~-~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 82 -----------------------------LE-LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp -----------------------------HH-HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------------------------HH-HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 00 01111112344444443 2234 5678888889999999999999999
Q ss_pred HHHhcCCCCC--chhHHHHHHHHHHcCChHHHHHHHHHHH
Q 038364 896 RRLFKLEPCN--SANYNLMMNLLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 896 ~~l~~l~P~~--~~~y~~L~~~y~~~G~~~eA~~~~~~m~ 933 (1076)
+++++++|+. +..+..++.+|...|+.++|...+++..
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 9999999875 5588999999999999999998888753
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.34 E-value=8.9e-06 Score=100.71 Aligned_cols=193 Identities=15% Similarity=0.044 Sum_probs=144.3
Q ss_pred hcCCCchhHHHHHHHHH--------HcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHc
Q 038364 714 GGLGLLQNGKEIHCLCL--------KNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIY 782 (1076)
Q Consensus 714 ~~~g~~~~a~~i~~~~~--------~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~ 782 (1076)
...+++++|.+.++.++ +. ...+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 55667777777777666 21 233556778888899999999999999987763 4677899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHH
Q 038364 783 GNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAW 860 (1076)
Q Consensus 783 g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~ 860 (1076)
|++++|++.|++..+ +.|+. ..+..+..++...|++++ .+.|++..+. .|+ ...|..+..+|.+.|++++|.
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999998 46654 567788888999999999 9999998763 454 568889999999999999999
Q ss_pred HHHHhC-CCCCCH-HHHHHHHHHHHHcCC-----chHHHHHHHHHhcCCCCCchhHHHHH
Q 038364 861 DFIRTM-PFKPDA-TIWGALLGSCRIHGH-----LEYAEIASRRLFKLEPCNSANYNLMM 913 (1076)
Q Consensus 861 ~l~~~m-~~~pd~-~~~~~Ll~a~~~~g~-----~e~A~~~~~~l~~l~P~~~~~y~~L~ 913 (1076)
+.+++. ...|+. ..|..+..++...++ .+...++.+.+.++.++++..+....
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l~~ 614 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQIRA 614 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHHHH
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 999997 466764 577777777766555 34445555555566666555544433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.5e-06 Score=85.06 Aligned_cols=97 Identities=10% Similarity=0.029 Sum_probs=85.3
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
...+..+...+.+.|++++|...|++. .. +.+...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 456677788889999999999999886 23 3467789999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhCC
Q 038364 918 MSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 918 ~~G~~~eA~~~~~~m~~~g 936 (1076)
..|++++|.+.+++..+..
T Consensus 101 ~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHC
Confidence 9999999999999986543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.32 E-value=6.4e-06 Score=85.15 Aligned_cols=123 Identities=9% Similarity=-0.093 Sum_probs=97.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcC
Q 038364 809 ALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHG 886 (1076)
Q Consensus 809 ~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g 886 (1076)
.+...+...|++++|.+.|++. +.|+...|..+...|.+.|++++|.+.+++. . .+.+...|..+..++...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 3444566677777777777655 2456667777777777888888888777765 2 2345678888899999999
Q ss_pred CchHHHHHHHHHhcCCCCCc----------------hhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 887 HLEYAEIASRRLFKLEPCNS----------------ANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 887 ~~e~A~~~~~~l~~l~P~~~----------------~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
++++|+..+++++++.|++. ..+..++.+|.+.|++++|.+.+++..+..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999888877 889999999999999999999999987654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.31 E-value=5.1e-06 Score=86.23 Aligned_cols=154 Identities=12% Similarity=0.069 Sum_probs=109.6
Q ss_pred HHHhhcCCHHHHHHHHHhcCCCC---hHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-H
Q 038364 746 DMYSKSGNLKSAREVFRKSANKT---LASWNC----------------MIMGFAIYGNGKEAILLFHELLETGFQPDA-I 805 (1076)
Q Consensus 746 ~~y~k~G~~~~A~~vf~~m~~~d---~~s~n~----------------li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~ 805 (1076)
..+.+.|++++|...|++..+.+ ...|.. +...|.+.|++++|+..|++..+ +.|+. .
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~ 89 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAPNNVD 89 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHH
Confidence 34445566666666655544322 223444 88889999999999999999988 46654 5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCC--HHHHHHHHHhCCCCCCH--HHHHHHHH
Q 038364 806 TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGY--LDEAWDFIRTMPFKPDA--TIWGALLG 880 (1076)
Q Consensus 806 t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~--l~eA~~l~~~m~~~pd~--~~~~~Ll~ 880 (1076)
.+..+...+...|++++|.+.|++..+. .|+ ...|..+...|...|. .+++...++... .|+. ..|..+..
T Consensus 90 ~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~ 165 (208)
T 3urz_A 90 CLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGL 165 (208)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHH
Confidence 7777888899999999999999998764 454 6678888888876654 445566666553 3443 34555666
Q ss_pred HHHHcCCchHHHHHHHHHhcCCCCC
Q 038364 881 SCRIHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 881 a~~~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
++...|++++|+..+++++++.|++
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCH
Confidence 6778899999999999999999974
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.7e-05 Score=86.98 Aligned_cols=163 Identities=9% Similarity=-0.056 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----cc
Q 038364 771 SWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-----ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT----IE 841 (1076)
Q Consensus 771 s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-----~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~----~~ 841 (1076)
.+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|.+.+++..+...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4455667778888888888888877764322111 12233444567778899999888887643211112 34
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC------Cc
Q 038364 842 HYSCMVDLLGKAGYLDEAWDFIRTMP----FKPD-----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC------NS 906 (1076)
Q Consensus 842 ~y~~li~~l~r~G~l~eA~~l~~~m~----~~pd-----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~------~~ 906 (1076)
.|+.+...|...|++++|.+.+++.. ..|+ ..++..+...|...|++++|+..+++++++.++ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 77888888999999999988887752 1222 257888889999999999999999999876432 14
Q ss_pred hhHHHHHHHHHHcCChHHH-HHHHHHHH
Q 038364 907 ANYNLMMNLLAMSNRWEDV-ERLRHSMD 933 (1076)
Q Consensus 907 ~~y~~L~~~y~~~G~~~eA-~~~~~~m~ 933 (1076)
..|..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6789999999999999999 77677653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.30 E-value=2e-06 Score=81.64 Aligned_cols=95 Identities=12% Similarity=0.028 Sum_probs=72.0
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 038364 841 EHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAM 918 (1076)
Q Consensus 841 ~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~ 918 (1076)
..+.-....|.+.|++++|++.|++. .. +.+...|..+..++...|++++|+..++++++++|+++..|..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 45556677777777777777777775 22 33566777777888888888888888888888888888888888888888
Q ss_pred cCChHHHHHHHHHHHhC
Q 038364 919 SNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 919 ~G~~~eA~~~~~~m~~~ 935 (1076)
.|++++|.+.+++..+.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 88888888888877543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=5.2e-06 Score=100.51 Aligned_cols=144 Identities=11% Similarity=-0.025 Sum_probs=83.2
Q ss_pred CCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHH
Q 038364 717 GLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFH 793 (1076)
Q Consensus 717 g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~ 793 (1076)
|++++|.+.++.+++. ...+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|+
T Consensus 3 g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRH-RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5666677776666653 122356666677777777777777777776543 244566777777777777777777777
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhc---CCHHHHHHHHHhC
Q 038364 794 ELLETGFQPD-AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKA---GYLDEAWDFIRTM 866 (1076)
Q Consensus 794 ~M~~~g~~Pd-~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~---G~l~eA~~l~~~m 866 (1076)
+..+. .|+ ...+..+..++...|++++|.+.|++..+. .| +...+..+...+.+. |+.++|.+.+++.
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 77663 343 345666666677777777777777776553 23 245666677777777 7777777776664
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.26 E-value=4e-05 Score=84.01 Aligned_cols=159 Identities=9% Similarity=-0.008 Sum_probs=110.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----cccHHH
Q 038364 775 MIMGFAIYGNGKEAILLFHELLETG-FQPDAI----TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT----IEHYSC 845 (1076)
Q Consensus 775 li~~~~~~g~~~~Al~l~~~M~~~g-~~Pd~~----t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~----~~~y~~ 845 (1076)
.+..+...|++++|+.++++..+.. ..|+.. .+..+...+...|++++|.+.|+...+...-.++ ...|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566677777777777777776532 122211 2223444566667888888888877653111222 225777
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-----C---CCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC------chhHH
Q 038364 846 MVDLLGKAGYLDEAWDFIRTMP-----F---KPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN------SANYN 910 (1076)
Q Consensus 846 li~~l~r~G~l~eA~~l~~~m~-----~---~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~------~~~y~ 910 (1076)
+...|.+.|++++|.+.++++- . .+. ..+|..+...|...|++++|+..+++++++.++. +..|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8888888888888887777652 1 122 2378888899999999999999999998865433 56799
Q ss_pred HHHHHHHHcCC-hHHHHHHHHHHH
Q 038364 911 LMMNLLAMSNR-WEDVERLRHSMD 933 (1076)
Q Consensus 911 ~L~~~y~~~G~-~~eA~~~~~~m~ 933 (1076)
.++.+|.+.|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 699999888764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.25 E-value=8.1e-06 Score=85.81 Aligned_cols=185 Identities=12% Similarity=-0.021 Sum_probs=131.4
Q ss_pred hhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCC-C-ChhhHHHHHHHHhhcCCHHHHHHHHHhcCC--CC-h---HHHHH
Q 038364 703 STTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFI-K-DAYVATGLIDMYSKSGNLKSAREVFRKSAN--KT-L---ASWNC 774 (1076)
Q Consensus 703 ~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~-~-d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d-~---~s~n~ 774 (1076)
...+..+...+...|++++|...++.+++..-. + ....+..+...|.+.|++++|.+.|++..+ |+ . ..|..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555667788899999999999999985322 1 135677889999999999999999998763 22 2 24555
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 038364 775 MIMGFAI------------------YGNGKEAILLFHELLETGFQPDAIT-FTALLAACKNSGLVEEGWKYFDSMSTDYN 835 (1076)
Q Consensus 775 li~~~~~------------------~g~~~~Al~l~~~M~~~g~~Pd~~t-~~~ll~a~~~~g~~~eA~~~~~~m~~~~g 835 (1076)
+..++.. .|+.++|+..|+++.+ ..|+... ..... .. ..+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~----~l------~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATK----RL------VFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHH----HH------HHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHH----HH------HHHHHHHH----
Confidence 5555544 5789999999999998 4676532 21111 00 01111111
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchh
Q 038364 836 IIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPDA----TIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSAN 908 (1076)
Q Consensus 836 ~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd~----~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~ 908 (1076)
.....+...|.+.|++++|...++++ ...|+. ..+..+..++...|+.++|+..++++....|++.++
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 12235678899999999999999886 233432 468888999999999999999999999999987654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.9e-06 Score=95.53 Aligned_cols=171 Identities=11% Similarity=0.011 Sum_probs=127.6
Q ss_pred cCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 038364 751 SGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLET----GFQPD-AITFTALLAACKNSGLVEEGWK 825 (1076)
Q Consensus 751 ~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~----g~~Pd-~~t~~~ll~a~~~~g~~~eA~~ 825 (1076)
.+++++|...|.+. ...|...|++++|+..|.+..+. |-.+. ..+|..+...|...|++++|..
T Consensus 29 ~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 97 (307)
T 2ifu_A 29 KPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ 97 (307)
T ss_dssp SCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH
T ss_pred CCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 46777777766543 45677778888888877776642 21111 2367777788999999999999
Q ss_pred HHHHhhhcC---CCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHHcCCchHHHH
Q 038364 826 YFDSMSTDY---NIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTMP-F---KPD----ATIWGALLGSCRIHGHLEYAEI 893 (1076)
Q Consensus 826 ~~~~m~~~~---g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m~-~---~pd----~~~~~~Ll~a~~~~g~~e~A~~ 893 (1076)
.|++..+.+ |-.. ...++..+..+|.+ |++++|++.+++.- + ..+ ..++..+...+...|++++|+.
T Consensus 98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 998876532 1111 14577888899988 99999999998751 1 111 4578888999999999999999
Q ss_pred HHHHHhcCCCCCc------hhHHHHHHHHHHcCChHHHHHHHHHHH
Q 038364 894 ASRRLFKLEPCNS------ANYNLMMNLLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 894 ~~~~l~~l~P~~~------~~y~~L~~~y~~~G~~~eA~~~~~~m~ 933 (1076)
.+++++++.|++. ..+..++.++...|++++|.+.+++..
T Consensus 177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999866543 357778888999999999999999985
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.22 E-value=5.7e-06 Score=78.43 Aligned_cols=114 Identities=14% Similarity=0.032 Sum_probs=83.7
Q ss_pred CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHH
Q 038364 800 FQPDAI-TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIW 875 (1076)
Q Consensus 800 ~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~ 875 (1076)
+.|+.. .+...-..+.+.|++++|.+.|++..+. .| +...|..+..+|.+.|++++|++.+++. .+ +.+...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 344442 4455555666777777777777766543 23 3556777777777778888877777775 23 3456789
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 038364 876 GALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLL 916 (1076)
Q Consensus 876 ~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y 916 (1076)
..+..++...|++++|+..++++++++|++..++..|.+++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999988888777653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.20 E-value=8.8e-06 Score=78.60 Aligned_cols=96 Identities=14% Similarity=-0.040 Sum_probs=83.0
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
...+..+...+.+.|++++|.+.|++. .. +.+...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 345556777888889999998888876 22 3467789999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhC
Q 038364 918 MSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 918 ~~G~~~eA~~~~~~m~~~ 935 (1076)
..|++++|.+.+++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999998654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.3e-05 Score=80.54 Aligned_cols=154 Identities=11% Similarity=-0.002 Sum_probs=91.2
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCC--ChHHHHHHHHH-HHH
Q 038364 705 TMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANK--TLASWNCMIMG-FAI 781 (1076)
Q Consensus 705 t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~--d~~s~n~li~~-~~~ 781 (1076)
.+......+...|++++|...++.+++. .+.+...+..+...|.+.|++++|.+.|++.... +...+..+... +..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE-LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH-HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHh
Confidence 4556667788999999999999887763 1235678889999999999999999999988653 33322222111 112
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC---cccHHHHHHHHHhcCCHH
Q 038364 782 YGNGKEAILLFHELLETGFQPD-AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT---IEHYSCMVDLLGKAGYLD 857 (1076)
Q Consensus 782 ~g~~~~Al~l~~~M~~~g~~Pd-~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~---~~~y~~li~~l~r~G~l~ 857 (1076)
.+...+|+..|++..+ ..|+ ...+..+...+...|++++|...|+++.+. .|+ ...+..+...|...|+.+
T Consensus 87 ~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 87 QAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKV---NLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred hcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CcccChHHHHHHHHHHHHHhCCCC
Confidence 1222235566666655 3443 344455555555666666666666555432 222 223444444444444444
Q ss_pred HHHHHHH
Q 038364 858 EAWDFIR 864 (1076)
Q Consensus 858 eA~~l~~ 864 (1076)
+|...++
T Consensus 162 ~A~~~y~ 168 (176)
T 2r5s_A 162 AIASKYR 168 (176)
T ss_dssp HHHHHHH
T ss_pred cHHHHHH
Confidence 4444443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.18 E-value=4.5e-06 Score=91.22 Aligned_cols=190 Identities=9% Similarity=-0.029 Sum_probs=129.9
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 038364 738 AYVATGLIDMYSKSGNLKSAREVFRKSA---NKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAA 813 (1076)
Q Consensus 738 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a 813 (1076)
...+..+...|.+.|++++|.+.|++.. ..+...|..+...|.+.|++++|+..+++..+ +.|+. ..+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 4456667778888888888888887654 23667788888888888888888888888887 45554 567777778
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHH
Q 038364 814 CKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAE 892 (1076)
Q Consensus 814 ~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~ 892 (1076)
+...|++++|.+.|+...+. .|+ ...+...+....+..+..+... .......++..+...+ ..+ ..|+.++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 88889999999888877653 222 1122222222222222111111 2223344455544444 333 368999999
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHc-CChHHHHHHHHHHHhC
Q 038364 893 IASRRLFKLEPCNSANYNLMMNLLAMS-NRWEDVERLRHSMDEV 935 (1076)
Q Consensus 893 ~~~~~l~~l~P~~~~~y~~L~~~y~~~-G~~~eA~~~~~~m~~~ 935 (1076)
..++++++++|++......+..++.+. +++++|.+++.+..+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998877777788888877 7799999999988653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1.5e-05 Score=73.70 Aligned_cols=113 Identities=18% Similarity=0.162 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 038364 806 TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMP--FKPDATIWGALLGSCR 883 (1076)
Q Consensus 806 t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~--~~pd~~~~~~Ll~a~~ 883 (1076)
.+..+...+...|++++|.++++++.+.. ..+...+..+...+.+.|++++|..+++++. .+.+..+|..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 34444444555555555555555554321 1223455555666666666666666665541 2345667888888888
Q ss_pred HcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcC
Q 038364 884 IHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSN 920 (1076)
Q Consensus 884 ~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G 920 (1076)
..|++++|...++++++++|+++..+..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8899999999999999999988888888888876654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1.4e-05 Score=78.45 Aligned_cols=125 Identities=10% Similarity=-0.068 Sum_probs=85.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHc
Q 038364 808 TALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIH 885 (1076)
Q Consensus 808 ~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~ 885 (1076)
..+...+...|++++|...|+...+. ...+...+..+...+.+.|++++|.+.+++. . .+.+...|..+..++...
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 33344455555555555555555432 1123445556666666666666666666654 1 233566888888899999
Q ss_pred CCchHHHHHHHHHhcCCCCCchhHHHH--HHHHHHcCChHHHHHHHHHHHh
Q 038364 886 GHLEYAEIASRRLFKLEPCNSANYNLM--MNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 886 g~~e~A~~~~~~l~~l~P~~~~~y~~L--~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
|++++|...+++++++.|++...+..+ +..+.+.|++++|.+.+++..+
T Consensus 95 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 95 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999988877544 4448888999999999887643
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.3e-05 Score=87.87 Aligned_cols=132 Identities=11% Similarity=-0.031 Sum_probs=111.3
Q ss_pred CCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHH
Q 038364 802 PDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTMP-FKPDATIWGAL 878 (1076)
Q Consensus 802 Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m~-~~pd~~~~~~L 878 (1076)
|+. ..+..+...+...|++++|...|++..+. .|+ ...+..+..+|.+.|++++|.+.+++.. ..|+...+...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 444 45666777789999999999999998764 454 6688899999999999999999999984 56776644444
Q ss_pred HH-HHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 879 LG-SCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 879 l~-a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
.. .+...++.+.|+..++++++.+|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD 249 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 43 36778899999999999999999999999999999999999999999999996644
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.15 E-value=3e-05 Score=79.98 Aligned_cols=146 Identities=12% Similarity=-0.018 Sum_probs=98.3
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 038364 740 VATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGL 819 (1076)
Q Consensus 740 ~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~ 819 (1076)
.+..+...|.+.|++++|.+.|++..+++...|..+...|...|++++|+..|++..+.. ..+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 344566777778888888888887777777777777777888888888888887777632 2233456666666777777
Q ss_pred HHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038364 820 VEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPD-ATIWGALLGSCRIHGHLEYAEIASRRL 898 (1076)
Q Consensus 820 ~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l 898 (1076)
+++|.+.|+...+...-.+... | ...| +...|+ ...|..+..++...|++++|...++++
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~-~-------~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLID-Y-------KILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEE-C-------GGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHH-H-------HHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777777777655311111000 0 0000 012232 357888888999999999999999999
Q ss_pred hcCCCCC
Q 038364 899 FKLEPCN 905 (1076)
Q Consensus 899 ~~l~P~~ 905 (1076)
+++.|++
T Consensus 148 l~~~p~~ 154 (213)
T 1hh8_A 148 TSMKSEP 154 (213)
T ss_dssp HTTCCSG
T ss_pred HHcCccc
Confidence 9999975
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00019 Score=78.98 Aligned_cols=210 Identities=12% Similarity=0.131 Sum_probs=139.5
Q ss_pred hhHHHHHHHHHHcCCCCC-hhhHHHHHHHHhhcC--CHHHHHHHHHhcCC---CChHHHHHHHHHH----HHc---CCHH
Q 038364 720 QNGKEIHCLCLKNGFIKD-AYVATGLIDMYSKSG--NLKSAREVFRKSAN---KTLASWNCMIMGF----AIY---GNGK 786 (1076)
Q Consensus 720 ~~a~~i~~~~~~~g~~~d-~~~~~~Li~~y~k~G--~~~~A~~vf~~m~~---~d~~s~n~li~~~----~~~---g~~~ 786 (1076)
++|....+.+++ +.|+ ..+++.--..+...| +++++.+.++.+.. ++...|+--...+ ... ++.+
T Consensus 50 ~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 345555555554 2332 334455555555555 77777777776553 3445666433333 344 6778
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCC------HHH
Q 038364 787 EAILLFHELLETGFQPDAITFTALLAACKNSGLVE--EGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGY------LDE 858 (1076)
Q Consensus 787 ~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~--eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~------l~e 858 (1076)
+++++++++.+.. .-|...|..-...+.+.|.++ ++.++++++.+.. .-+...|+.-..++.+.|+ +++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 8888888887732 234456666666666777776 7888888877641 1234455555555666665 888
Q ss_pred HHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchH-HHHHHHHHhcCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 859 AWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEY-AEIASRRLFKLE---PCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 859 A~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~-A~~~~~~l~~l~---P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
+++.++++ . .+-|...|+-+...+.+.|+... ...+++++++++ |.++.+...++++|.+.|+.++|.++++++
T Consensus 205 El~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 205 ELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 88888776 2 34577889888888888887444 566778887776 778888899999999999999999999998
Q ss_pred Hh
Q 038364 933 DE 934 (1076)
Q Consensus 933 ~~ 934 (1076)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 65
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=1.6e-05 Score=74.11 Aligned_cols=115 Identities=8% Similarity=-0.082 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 038364 806 TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCR 883 (1076)
Q Consensus 806 t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~ 883 (1076)
.+..+...+...|++++|.+.|++..+.. ..+...+..+...+...|++++|.+.+++. . .+.+...|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 34444444555566666666655554421 123445556666666666666666666654 1 2234667888888889
Q ss_pred HcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCCh
Q 038364 884 IHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRW 922 (1076)
Q Consensus 884 ~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~ 922 (1076)
..|++++|...+++++++.|+++..+..++.++.+.|++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999988999999999888875
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.7e-05 Score=74.54 Aligned_cols=112 Identities=9% Similarity=-0.041 Sum_probs=69.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 038364 807 FTALLAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCR 883 (1076)
Q Consensus 807 ~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~ 883 (1076)
+..+...+...|++++|.+.|++..+. .| +...+..+...|.+.|++++|.+.+++. . .+.+...|..+..++.
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKR---NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTT---CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 334444444445555555544444321 12 2344445555555555555555555553 1 1234567777888888
Q ss_pred HcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCC
Q 038364 884 IHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNR 921 (1076)
Q Consensus 884 ~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~ 921 (1076)
..|++++|+..++++++++|++...+..++.+|.+.|+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888877664
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.07 E-value=4.3e-05 Score=79.15 Aligned_cols=158 Identities=9% Similarity=0.066 Sum_probs=119.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHH----------------HHHHHHhcCCHHHHHHHHHHhhhcC
Q 038364 772 WNCMIMGFAIYGNGKEAILLFHELLETGFQPDAI-TFTA----------------LLAACKNSGLVEEGWKYFDSMSTDY 834 (1076)
Q Consensus 772 ~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~-t~~~----------------ll~a~~~~g~~~eA~~~~~~m~~~~ 834 (1076)
+-.....+...|++++|+..|++..+ ..|+.. .+.. +..++...|++++|...|++..+.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 83 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK- 83 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence 33455677889999999999999998 567654 4555 677889999999999999998764
Q ss_pred CCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC--chHHHHHHHHHhcCCCCCchhH
Q 038364 835 NIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGH--LEYAEIASRRLFKLEPCNSANY 909 (1076)
Q Consensus 835 g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~--~e~A~~~~~~l~~l~P~~~~~y 909 (1076)
.|+ ...+..+..+|...|++++|.+.+++. ...| +...|..+...+...|+ .+.+...++++....|.. ..+
T Consensus 84 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~ 160 (208)
T 3urz_A 84 --APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-YAR 160 (208)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-HHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-HHH
Confidence 454 678889999999999999999999987 3444 56788888888766554 445566666665443322 245
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 910 NLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 910 ~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
..++..+...|++++|.+.+++..+.
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 66788888899999999999998543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.06 E-value=1.8e-05 Score=88.86 Aligned_cols=143 Identities=13% Similarity=0.029 Sum_probs=104.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHH
Q 038364 768 TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMV 847 (1076)
Q Consensus 768 d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li 847 (1076)
+...|..+...|.+.|++++|+..|++..+. .|+...+ ..+++.++ +.+ ....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~-~~~--------~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKA-QAL--------RLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHH-HHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHH-HHH--------HHHHHHHHH
Confidence 3456777788888888888888888887763 3432100 00111111 000 134666777
Q ss_pred HHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHH
Q 038364 848 DLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDV 925 (1076)
Q Consensus 848 ~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA 925 (1076)
.+|.+.|++++|++.+++. .. +.+...|..+..++...|++++|+..++++++++|++...+..++.+|.+.|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888776 22 345678999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHH
Q 038364 926 -ERLRHSM 932 (1076)
Q Consensus 926 -~~~~~~m 932 (1076)
.+++++|
T Consensus 284 ~~~~~~~~ 291 (336)
T 1p5q_A 284 EKKLYANM 291 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 4466665
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00026 Score=77.35 Aligned_cols=158 Identities=11% Similarity=-0.012 Sum_probs=117.4
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCCCC---h-----H-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 038364 744 LIDMYSKSGNLKSAREVFRKSANKT---L-----A-SWNCMIMGFAIYGNGKEAILLFHELLETGFQ-PD----AITFTA 809 (1076)
Q Consensus 744 Li~~y~k~G~~~~A~~vf~~m~~~d---~-----~-s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~-Pd----~~t~~~ 809 (1076)
.+..+.+.|++++|.+.+++..+.. . . .+..+...+...|++++|+..|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4677888999999999998865421 1 1 2334666777778999999999999874222 23 225788
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcC----CCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 038364 810 LLAACKNSGLVEEGWKYFDSMSTDY----NIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-------PFKPD-ATIWG 876 (1076)
Q Consensus 810 ll~a~~~~g~~~eA~~~~~~m~~~~----g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-------~~~pd-~~~~~ 876 (1076)
+...|...|++++|.++|+++.+.. +..+. ...|..+...|.+.|++++|.+.+++. ...+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8888999999999999999887421 11122 347788999999999999999988775 12222 56888
Q ss_pred HHHHHHHHcCC-chHHHHHHHHHhcC
Q 038364 877 ALLGSCRIHGH-LEYAEIASRRLFKL 901 (1076)
Q Consensus 877 ~Ll~a~~~~g~-~e~A~~~~~~l~~l 901 (1076)
.+..++...|+ +++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 89999999995 59999999988753
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00041 Score=76.22 Aligned_cols=224 Identities=6% Similarity=-0.012 Sum_probs=149.5
Q ss_pred hHHHHHHHHHhhcCCCCChh-hHHHHHHHHhcCC--CchhHHHHHHHHHHcCCCCChhhHHHHHHHH----hhc---CCH
Q 038364 685 RESLKFFIQMQQEDIKPNST-TMSSLLQTCGGLG--LLQNGKEIHCLCLKNGFIKDAYVATGLIDMY----SKS---GNL 754 (1076)
Q Consensus 685 ~eAl~l~~~m~~~gi~pd~~-t~~~lL~a~~~~g--~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y----~k~---G~~ 754 (1076)
++|++++.+++. +.|+.. .|+.--..+...+ +++++....+.+++.. .-+..+|+.-...+ .+. +++
T Consensus 50 ~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 455555555554 344332 2444334444444 5666666666655531 11223333322222 333 678
Q ss_pred HHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HHHH
Q 038364 755 KSAREVFRKSAN---KTLASWNCMIMGFAIYGNGK--EAILLFHELLETGFQPDAITFTALLAACKNSGL------VEEG 823 (1076)
Q Consensus 755 ~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~--~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~------~~eA 823 (1076)
+++.++++.+.+ +|..+|+--.-.+.+.|..+ ++++.++++.+.. .-|...|+.--....+.+. ++++
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 888888887764 56678887777777788887 9999999999853 2344566655555666665 8899
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHH-HHHHHHhCC-C----CCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 038364 824 WKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDE-AWDFIRTMP-F----KPDATIWGALLGSCRIHGHLEYAEIASRR 897 (1076)
Q Consensus 824 ~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~e-A~~l~~~m~-~----~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~ 897 (1076)
.++++.+... -.-|...|+-+..++.+.|+..+ +.++.++.- . ..++..+..+..++.+.|+.++|.++++.
T Consensus 206 l~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 206 LNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 9999888764 22346678888888888888444 556777652 1 34677899999999999999999999999
Q ss_pred Hhc-CCCCCchhHHHHHH
Q 038364 898 LFK-LEPCNSANYNLMMN 914 (1076)
Q Consensus 898 l~~-l~P~~~~~y~~L~~ 914 (1076)
+.+ .+|-+..++...++
T Consensus 284 l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 284 LKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHTTCGGGHHHHHHHHH
T ss_pred HHhccChHHHHHHHHHHh
Confidence 996 89988777766554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00018 Score=74.68 Aligned_cols=157 Identities=7% Similarity=0.017 Sum_probs=82.7
Q ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCC----CchhHHHHHHHHHHcCCCCChhhHH
Q 038364 667 NVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLG----LLQNGKEIHCLCLKNGFIKDAYVAT 742 (1076)
Q Consensus 667 d~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g----~~~~a~~i~~~~~~~g~~~d~~~~~ 742 (1076)
+...+..+...|...+++++|++.|++..+.| +...+..+-..+.. + +.++|...+....+.| ++..+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 33444444444444444445554444444332 22333333333333 3 4555555555554433 344455
Q ss_pred HHHHHHhh----cCCHHHHHHHHHhcCCCC-----hHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 038364 743 GLIDMYSK----SGNLKSAREVFRKSANKT-----LASWNCMIMGFAI----YGNGKEAILLFHELLETGFQPDAITFTA 809 (1076)
Q Consensus 743 ~Li~~y~k----~G~~~~A~~vf~~m~~~d-----~~s~n~li~~~~~----~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ 809 (1076)
.|..+|.. .+++++|.+.|++..+.+ ..++..|...|.. .++.++|+.+|++..+. ..+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 55566655 667777777777666543 3566666666666 66777777777777664 122233444
Q ss_pred HHHHHHhc-C-----CHHHHHHHHHHhhh
Q 038364 810 LLAACKNS-G-----LVEEGWKYFDSMST 832 (1076)
Q Consensus 810 ll~a~~~~-g-----~~~eA~~~~~~m~~ 832 (1076)
|-..|... | +.++|.++|+...+
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 44444432 2 67777777766654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.8e-05 Score=74.29 Aligned_cols=95 Identities=8% Similarity=-0.089 Sum_probs=81.5
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 038364 841 EHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAM 918 (1076)
Q Consensus 841 ~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~ 918 (1076)
..+..+...+.+.|++++|.+.+++. . .+.+...|..+..++...|++++|+..++++++++|+++..|..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34566777888888888888888876 2 234677899999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhC
Q 038364 919 SNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 919 ~G~~~eA~~~~~~m~~~ 935 (1076)
.|++++|.+.+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 99999999999988654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.04 E-value=2e-05 Score=71.39 Aligned_cols=97 Identities=13% Similarity=-0.007 Sum_probs=84.5
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC--CchhHHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC--NSANYNLMMNL 915 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~--~~~~y~~L~~~ 915 (1076)
...+..+...+.+.|++++|...+++. . .+.+...|..+...+...|++++|+..+++++++.|+ +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 556777888888999999999988876 2 2346778889999999999999999999999999999 99999999999
Q ss_pred HHHc-CChHHHHHHHHHHHhCC
Q 038364 916 LAMS-NRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 916 y~~~-G~~~eA~~~~~~m~~~g 936 (1076)
|.+. |++++|.+.+++..+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 9999 99999999999986654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.1e-05 Score=80.79 Aligned_cols=119 Identities=8% Similarity=0.044 Sum_probs=85.0
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH-HHHcCCc--hH
Q 038364 816 NSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGS-CRIHGHL--EY 890 (1076)
Q Consensus 816 ~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a-~~~~g~~--e~ 890 (1076)
..|++++|...++...+.. +.+...|..+...|...|++++|.+.+++. .. +.+...|..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3456666666666655431 123456667777777777777777777665 22 2356677777777 7788888 99
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 891 AEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 891 A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
|+..++++++++|+++..+..++.+|...|++++|.+.+++..+..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999999999988889999999999999999999998886544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=1.2e-05 Score=75.42 Aligned_cols=97 Identities=14% Similarity=-0.076 Sum_probs=85.0
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
...+..+...+.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++..+..|+.+|.
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345667788899999999999999887 3334 67789999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhCC
Q 038364 918 MSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 918 ~~G~~~eA~~~~~~m~~~g 936 (1076)
..|++++|.+.+++..+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999986543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00012 Score=80.03 Aligned_cols=160 Identities=11% Similarity=-0.011 Sum_probs=110.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcCC---CCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HHH
Q 038364 741 ATGLIDMYSKSGNLKSAREVFRKSAN---KTL------ASWNCMIMGFAIYGNGKEAILLFHELLETGF---QPD--AIT 806 (1076)
Q Consensus 741 ~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~------~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~---~Pd--~~t 806 (1076)
+...+..|...|++++|.+.+++..+ ... ..+..+...+...|++++|+..|++..+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34466777788888888888765432 111 1233455667777888888888888875321 222 236
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-----cccHHHHHHHHHhcCCHHHHHHHHHhCC-C------CC-CHH
Q 038364 807 FTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-----IEHYSCMVDLLGKAGYLDEAWDFIRTMP-F------KP-DAT 873 (1076)
Q Consensus 807 ~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-----~~~y~~li~~l~r~G~l~eA~~l~~~m~-~------~p-d~~ 873 (1076)
++.+...|...|++++|.++|++..+.....|+ ...|..+...|.+.|++++|.+.+++.- . .. -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 777777888889999998888887632111222 2477788888899999999988887751 1 11 156
Q ss_pred HHHHHHHHHHHcCCchHH-HHHHHHHhc
Q 038364 874 IWGALLGSCRIHGHLEYA-EIASRRLFK 900 (1076)
Q Consensus 874 ~~~~Ll~a~~~~g~~e~A-~~~~~~l~~ 900 (1076)
+|..+...+...|+.++| ...++++++
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 788888899999999999 777887764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.99 E-value=7.2e-05 Score=76.18 Aligned_cols=155 Identities=10% Similarity=0.052 Sum_probs=81.3
Q ss_pred hcCCHHHHHH---HHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHhcCCHH
Q 038364 750 KSGNLKSARE---VFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLE----TGFQPDA-ITFTALLAACKNSGLVE 821 (1076)
Q Consensus 750 k~G~~~~A~~---vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~----~g~~Pd~-~t~~~ll~a~~~~g~~~ 821 (1076)
..|++++|.+ .+..-+......|+.+...+...|++++|+..+++..+ .|..|.. ..+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566667766 44332222345666666677777777777777666554 1111111 23444444455555666
Q ss_pred HHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCchHHHHHHHHHh
Q 038364 822 EGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKP--DATIWGALLGSCRIHGHLEYAEIASRRLF 899 (1076)
Q Consensus 822 eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~p--d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~ 899 (1076)
+|.+++++..+. +++.+..| ....+..+...+...|++++|+..+++.+
T Consensus 84 ~A~~~~~~al~~-----------------------------~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 84 AARRCFLEEREL-----------------------------LASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHH-----------------------------HHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----------------------------HHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 555555544321 11111011 12245555556666666666666666665
Q ss_pred cCCC--CC----chhHHHHHHHHHHcCChHHHHHHHHHHH
Q 038364 900 KLEP--CN----SANYNLMMNLLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 900 ~l~P--~~----~~~y~~L~~~y~~~G~~~eA~~~~~~m~ 933 (1076)
++.+ .+ ...+..++.+|...|++++|.+.+++..
T Consensus 135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4321 11 1235677788888888888877777664
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.97 E-value=3.5e-05 Score=73.17 Aligned_cols=98 Identities=9% Similarity=-0.091 Sum_probs=83.5
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 038364 839 TIEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLL 916 (1076)
Q Consensus 839 ~~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y 916 (1076)
+...+..+...+.+.|++++|.+.+++. . .+.+...|..+...+...|+++.|+..++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4566777788888888888888888775 2 2345678889999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhCC
Q 038364 917 AMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 917 ~~~G~~~eA~~~~~~m~~~g 936 (1076)
...|++++|.+.+++..+..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHC
Confidence 99999999999999886543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.96 E-value=3.1e-05 Score=83.42 Aligned_cols=182 Identities=8% Similarity=-0.058 Sum_probs=127.6
Q ss_pred hcCCHHHHHHHHHhcCC---CChHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--------------
Q 038364 750 KSGNLKSAREVFRKSAN---KTLASWNCM-------IMGFAIYGNGKEAILLFHELLETGFQPDAI-------------- 805 (1076)
Q Consensus 750 k~G~~~~A~~vf~~m~~---~d~~s~n~l-------i~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~-------------- 805 (1076)
..++.+.|.+.|.+..+ .....|+.+ ...+...++..+++..+++-.+ +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46777778887777653 233577766 3555555555555555554443 333321
Q ss_pred --------HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 038364 806 --------TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDA----T 873 (1076)
Q Consensus 806 --------t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd~----~ 873 (1076)
....+...+...|++++|.+.|+.+... .|+......+...+.+.|++++|+..++.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1233455677889999999998877642 354335566677888999999999999876444433 3
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhcCC--CC-CchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 874 IWGALLGSCRIHGHLEYAEIASRRLFKLE--PC-NSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 874 ~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~--P~-~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
++..+..++...|++++|+..+++...-. |. .+.....++.++.+.|+.+||..+++++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 67778888999999999999999987543 54 45678889999999999999999999996644
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.94 E-value=2.7e-05 Score=77.06 Aligned_cols=96 Identities=9% Similarity=0.005 Sum_probs=69.9
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345556666677777777777777665 2223 56677777777788888888888888888888888778888888888
Q ss_pred HcCChHHHHHHHHHHHhC
Q 038364 918 MSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 918 ~~G~~~eA~~~~~~m~~~ 935 (1076)
..|++++|.+.+++..+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 888888888888777553
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=97.93 E-value=4.3e-05 Score=70.49 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=87.0
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTMP--FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m~--~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
...+..+...+.+.|++++|.++++++. .+.+..+|..+...+...|++++|+..++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 4567788999999999999999999872 33467789999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhCC
Q 038364 918 MSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 918 ~~G~~~eA~~~~~~m~~~g 936 (1076)
..|++++|.+.++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999986543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=4.3e-05 Score=69.73 Aligned_cols=94 Identities=14% Similarity=0.106 Sum_probs=62.7
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHc
Q 038364 842 HYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMS 919 (1076)
Q Consensus 842 ~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~ 919 (1076)
.+..++..+...|++++|.+.+++. . .+.+...|..+...+...|++++|...++++++++|+++..+..++.+|...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 4445556666666666666666654 1 2234556666667777777777777777777777777777777777777777
Q ss_pred CChHHHHHHHHHHHhC
Q 038364 920 NRWEDVERLRHSMDEV 935 (1076)
Q Consensus 920 G~~~eA~~~~~~m~~~ 935 (1076)
|++++|.+.+++..+.
T Consensus 86 ~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHc
Confidence 7777777777766543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.88 E-value=4.7e-05 Score=71.42 Aligned_cols=96 Identities=11% Similarity=0.053 Sum_probs=87.0
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|+..++++++++|+++..+..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 557788899999999999999999986 3444 67789999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhC
Q 038364 918 MSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 918 ~~G~~~eA~~~~~~m~~~ 935 (1076)
+.|++++|.+.+++..+.
T Consensus 96 ~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHh
Confidence 999999999999998654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=2.1e-05 Score=76.72 Aligned_cols=108 Identities=13% Similarity=-0.001 Sum_probs=74.9
Q ss_pred CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHH
Q 038364 800 FQPDAI-TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFK-PDATIW 875 (1076)
Q Consensus 800 ~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~-pd~~~~ 875 (1076)
+.|+.. .+..+...+...|++++|...|+..... .| +...|..+..+|.+.|++++|.+.+++. ... .+...|
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 92 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFP 92 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 344432 3444555566677777777777766543 23 3556666777777777777777777765 222 345678
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHH
Q 038364 876 GALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYN 910 (1076)
Q Consensus 876 ~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~ 910 (1076)
..+..++...|++++|+..+++++++.|+++....
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 88888899999999999999999999998876543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.8e-05 Score=85.28 Aligned_cols=136 Identities=10% Similarity=-0.122 Sum_probs=90.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC--cccHHHHHHHHH
Q 038364 774 CMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT--IEHYSCMVDLLG 851 (1076)
Q Consensus 774 ~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~--~~~y~~li~~l~ 851 (1076)
.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHH
Confidence 3455666677777777777666652 455543333344577778888888887654321 0 111 235666778888
Q ss_pred hcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHH
Q 038364 852 KAGYLDEAWDFIRTMP---FKPD--ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMN 914 (1076)
Q Consensus 852 r~G~l~eA~~l~~~m~---~~pd--~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~ 914 (1076)
+.|++++|++.+++.. ..|. ...+..+..+++..|+.++|...++++++.+|+ ..++..|.+
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 8888888888888762 2143 336777788889999999999999999999997 655555543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.86 E-value=7.6e-05 Score=71.51 Aligned_cols=96 Identities=10% Similarity=-0.018 Sum_probs=72.3
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMN 914 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~ 914 (1076)
...+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+...|++++|+..++++++++|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 445666677777777777777777765 45565 4577777777888888888888888888888888778888888
Q ss_pred HHHHcCChHHHHHHHHHHHhC
Q 038364 915 LLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 915 ~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
+|...|++++|.+.+++..+.
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHc
Confidence 888888888888888877543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00012 Score=66.58 Aligned_cols=108 Identities=11% Similarity=0.008 Sum_probs=71.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHH
Q 038364 807 FTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRI 884 (1076)
Q Consensus 807 ~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~ 884 (1076)
+..+...+...|++++|.+.|+...... +.+...+..+...+.+.|++++|.+.+++. .. +.+...|..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3444444555566666666655554421 123445556666666666777766666654 22 2356678888888999
Q ss_pred cCCchHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 038364 885 HGHLEYAEIASRRLFKLEPCNSANYNLMMNLL 916 (1076)
Q Consensus 885 ~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y 916 (1076)
.|++++|...++++++++|+++..+..++.+.
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999998877777766654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=7.8e-05 Score=76.26 Aligned_cols=169 Identities=12% Similarity=-0.021 Sum_probs=102.3
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 038364 744 LIDMYSKSGNLKSAREVFRKSANK---TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLV 820 (1076)
Q Consensus 744 Li~~y~k~G~~~~A~~vf~~m~~~---d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~ 820 (1076)
.+......|+++.|.+.++...+. ....|..+...+...|++++|+..|++..+. .|+...+... ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~ 79 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------IL 79 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hH
Confidence 344455556666666666533221 3346777778888888888888888888762 3322100000 00
Q ss_pred HHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038364 821 EEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRL 898 (1076)
Q Consensus 821 ~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l 898 (1076)
++-. ..+ ....|..+..+|.+.|++++|.+.+++. . .+.+...|..+..++...|++++|+..++++
T Consensus 80 ~~~~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 80 LDKK---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHH---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHH---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 0000 000 0245566777778888888888887775 2 2345678888999999999999999999999
Q ss_pred hcCCCCCchhHHHHHHHHHHcCChHHHH-HHHHHHH
Q 038364 899 FKLEPCNSANYNLMMNLLAMSNRWEDVE-RLRHSMD 933 (1076)
Q Consensus 899 ~~l~P~~~~~y~~L~~~y~~~G~~~eA~-~~~~~m~ 933 (1076)
++++|++...+..++.++...|+.+++. ..++.|-
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988887777 4555553
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.82 E-value=4.7e-05 Score=72.01 Aligned_cols=94 Identities=9% Similarity=-0.048 Sum_probs=79.0
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCch-------hHHH
Q 038364 841 EHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSA-------NYNL 911 (1076)
Q Consensus 841 ~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~-------~y~~ 911 (1076)
..+..+...+.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34566788888999999999998886 3334 5678999999999999999999999999999887653 5778
Q ss_pred HHHHHHHcCChHHHHHHHHHHHh
Q 038364 912 MMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 912 L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
++++|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 89999999999999999998754
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.80 E-value=8.3e-05 Score=74.36 Aligned_cols=126 Identities=8% Similarity=0.021 Sum_probs=83.9
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHH-HHhcCCH--H
Q 038364 781 IYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDL-LGKAGYL--D 857 (1076)
Q Consensus 781 ~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~-l~r~G~l--~ 857 (1076)
..|++++|+..|++..+.. +.+...+..+...+...|++++|...|++..+.. ..+...+..+..+ +.+.|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchH
Confidence 3456666666666666531 2234456666666777777777777777665431 1234556666666 6677887 8
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhH
Q 038364 858 EAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANY 909 (1076)
Q Consensus 858 eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y 909 (1076)
+|.+.+++. ...| +...|..+...+...|++++|...++++++++|+++...
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 888887775 2233 467888888899999999999999999999999886544
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00027 Score=71.75 Aligned_cols=94 Identities=15% Similarity=0.046 Sum_probs=57.6
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHhcCC------C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-C
Q 038364 738 AYVATGLIDMYSKSGNLKSAREVFRKSAN------K---TLASWNCMIMGFAIYGNGKEAILLFHELLET----GFQP-D 803 (1076)
Q Consensus 738 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~~------~---d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~----g~~P-d 803 (1076)
..++..+...|...|++++|.+.+++... . ....|+.+...|...|++++|+..+++..+. +-.| .
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 34455566666666666666666654432 1 1245667777788888888888887776642 1122 1
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 038364 804 -AITFTALLAACKNSGLVEEGWKYFDSMS 831 (1076)
Q Consensus 804 -~~t~~~ll~a~~~~g~~~eA~~~~~~m~ 831 (1076)
...+..+...+...|++++|.+++++..
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 1245555566777777777777777654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0001 Score=68.54 Aligned_cols=97 Identities=15% Similarity=0.083 Sum_probs=86.7
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
...+..+...+...|++++|.+.+++. . .+.+...|..+...+...|++++|+..++++++..|+++..+..++.+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 456778889999999999999999986 2 33467789999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhCC
Q 038364 918 MSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 918 ~~G~~~eA~~~~~~m~~~g 936 (1076)
..|++++|.+.+++..+..
T Consensus 92 ~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS
T ss_pred HhCCHHHHHHHHHHHHhcC
Confidence 9999999999999986543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00018 Score=68.75 Aligned_cols=76 Identities=17% Similarity=0.000 Sum_probs=51.1
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 842 HYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 842 ~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
.|..+...|.+.|++++|.+.+++. .. +.+...|..+..++...|++++|...++++++++|++...+..+..+..
T Consensus 67 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 67 LHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 3444445555555555555555443 11 2345677778888888899999999999999999988777666665543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0001 Score=72.61 Aligned_cols=64 Identities=14% Similarity=0.058 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 872 ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 872 ~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
..+|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3578888899999999999999999999999999999999999999999999999999988654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.72 E-value=7.4e-05 Score=73.01 Aligned_cols=63 Identities=8% Similarity=-0.088 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhcC-------CCCCchhH----HHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 873 TIWGALLGSCRIHGHLEYAEIASRRLFKL-------EPCNSANY----NLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 873 ~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l-------~P~~~~~y----~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
..|..+..++...|++++|+..+++++++ +|++...| +.++.+|...|+++||.+.+++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 38889999999999999999999999998 99999999 99999999999999999999998653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00011 Score=70.82 Aligned_cols=106 Identities=13% Similarity=-0.014 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 038364 807 FTALLAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCR 883 (1076)
Q Consensus 807 ~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~ 883 (1076)
+..+...+...|++++|.+.|+..... .| +...|..+..+|.+.|++++|.+.+++. .. +.+...|..+..++.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 344444566677777777777766543 23 3456666777777777777777777765 22 234567788888899
Q ss_pred HcCCchHHHHHHHHHhcCCCCCchhHHHHHHH
Q 038364 884 IHGHLEYAEIASRRLFKLEPCNSANYNLMMNL 915 (1076)
Q Consensus 884 ~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~ 915 (1076)
..|++++|+..+++++++.|+++........+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 99999999999999999999887766554433
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00016 Score=70.84 Aligned_cols=103 Identities=11% Similarity=-0.045 Sum_probs=83.7
Q ss_pred CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 038364 800 FQPDAI-TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIW 875 (1076)
Q Consensus 800 ~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~ 875 (1076)
+.|+.. .+..+...+...|++++|.+.|+...+. .|+ ...|..+..+|.+.|++++|.+.|++. ...| +...|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 456654 5666667788899999999999988753 454 667888899999999999999999886 3334 46788
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhcCCCCC
Q 038364 876 GALLGSCRIHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 876 ~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
..+..++...|++++|+..+++++++.|++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 999999999999999999999999999975
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.71 E-value=9.5e-05 Score=69.24 Aligned_cols=92 Identities=13% Similarity=0.024 Sum_probs=67.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC---chhHHHHHHH
Q 038364 844 SCMVDLLGKAGYLDEAWDFIRTM-PFKPD-A---TIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN---SANYNLMMNL 915 (1076)
Q Consensus 844 ~~li~~l~r~G~l~eA~~l~~~m-~~~pd-~---~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~---~~~y~~L~~~ 915 (1076)
..+...+.+.|++++|.+.+++. ...|+ . ..|..+..++...|++++|+..++++++..|++ +..+..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34556667777777777777665 11222 2 366677777888888888888888888888887 6668888888
Q ss_pred HHHcCChHHHHHHHHHHHhC
Q 038364 916 LAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 916 y~~~G~~~eA~~~~~~m~~~ 935 (1076)
|...|++++|.+.+++..+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888887553
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00042 Score=67.65 Aligned_cols=124 Identities=13% Similarity=-0.032 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHH
Q 038364 772 WNCMIMGFAIYGNGKEAILLFHELLETGFQP-DAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLL 850 (1076)
Q Consensus 772 ~n~li~~~~~~g~~~~Al~l~~~M~~~g~~P-d~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l 850 (1076)
|..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|.+.+++..+.. ..+...|..+...|
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence 333444444444444444444444432 22 23334444444444455555555444444321 11233444445555
Q ss_pred HhcCCHHHHHHHHHhC-CCC-CCHHHHHH--HHHHHHHcCCchHHHHHHHHHh
Q 038364 851 GKAGYLDEAWDFIRTM-PFK-PDATIWGA--LLGSCRIHGHLEYAEIASRRLF 899 (1076)
Q Consensus 851 ~r~G~l~eA~~l~~~m-~~~-pd~~~~~~--Ll~a~~~~g~~e~A~~~~~~l~ 899 (1076)
.+.|++++|.+.+++. ... .+...|.. +...+...|++++|...+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 5555555555555443 111 12233322 2222445556666666555543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00022 Score=70.41 Aligned_cols=105 Identities=10% Similarity=-0.036 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 038364 806 TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSC 882 (1076)
Q Consensus 806 t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~ 882 (1076)
.+..+...+...|++++|.+.|++..+. .| +...|..+...|.+.|++++|++.+++. ...| +...|..+..++
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3444445556666666666666665542 23 3456666677777777777777777665 2233 467888999999
Q ss_pred HHcCCchHHHHHHHHHhcCCCCCchhHHHHH
Q 038364 883 RIHGHLEYAEIASRRLFKLEPCNSANYNLMM 913 (1076)
Q Consensus 883 ~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~ 913 (1076)
...|++++|+..++++++++|++...+...+
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999999999988665544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0002 Score=66.95 Aligned_cols=107 Identities=11% Similarity=-0.097 Sum_probs=68.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 038364 807 FTALLAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCR 883 (1076)
Q Consensus 807 ~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~ 883 (1076)
+..+...+...|++++|.+.|++..+. .| +...|..+...|.+.|++++|.+.+++. ...| +...|..+..++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 333344455555555555555555432 22 2445566666666666666666666654 2223 4567888888888
Q ss_pred HcCCchHHHHHHHHHhcCC------CCCchhHHHHHHHH
Q 038364 884 IHGHLEYAEIASRRLFKLE------PCNSANYNLMMNLL 916 (1076)
Q Consensus 884 ~~g~~e~A~~~~~~l~~l~------P~~~~~y~~L~~~y 916 (1076)
..|++++|+..++++++++ |++......+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 8888999999999888888 77766666655544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.65 E-value=3.4e-05 Score=71.58 Aligned_cols=84 Identities=19% Similarity=0.076 Sum_probs=64.1
Q ss_pred hcCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHH
Q 038364 852 KAGYLDEAWDFIRTM-PF---KPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVE 926 (1076)
Q Consensus 852 r~G~l~eA~~l~~~m-~~---~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~ 926 (1076)
..|++++|++.+++. .. .|+ ...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 356677777777765 33 243 4478888888888999999999999999999999889999999999999999999
Q ss_pred HHHHHHHhC
Q 038364 927 RLRHSMDEV 935 (1076)
Q Consensus 927 ~~~~~m~~~ 935 (1076)
+.+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 988887553
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00011 Score=68.35 Aligned_cols=95 Identities=9% Similarity=-0.023 Sum_probs=78.3
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC-------chhHHH
Q 038364 841 EHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN-------SANYNL 911 (1076)
Q Consensus 841 ~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~-------~~~y~~ 911 (1076)
..+..+...+...|++++|...+++. . .+.+...|..+...+...|++++|...+++++++.|++ +..|..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34566777777888888888887775 2 23466788888888999999999999999999988776 778999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhC
Q 038364 912 MMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 912 L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
++.+|...|++++|.+.+++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999998654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00028 Score=82.70 Aligned_cols=142 Identities=10% Similarity=0.017 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHH
Q 038364 769 LASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVD 848 (1076)
Q Consensus 769 ~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~ 848 (1076)
...|..+...|.+.|++++|+..|++..+ +.|+...+ .-++..+ .+.. ....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-----------~~~~~~~-~~~~--------~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGL-----------SEKESKA-SESF--------LLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSC-----------CHHHHHH-HHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccC-----------ChHHHHH-HHHH--------HHHHHHHHHH
Confidence 34677788888888888888888888876 23332100 0011111 1111 1346677788
Q ss_pred HHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHH
Q 038364 849 LLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVE 926 (1076)
Q Consensus 849 ~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~ 926 (1076)
+|.+.|++++|++.+++. .. +.+...|..+..++...|++++|+..++++++++|++...+..++.++.+.|++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888876 22 3456789999999999999999999999999999999999999999999999999887
Q ss_pred H-HHHHH
Q 038364 927 R-LRHSM 932 (1076)
Q Consensus 927 ~-~~~~m 932 (1076)
+ ++++|
T Consensus 406 ~~~~~~~ 412 (457)
T 1kt0_A 406 RRIYANM 412 (457)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 4 44555
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00025 Score=77.15 Aligned_cols=99 Identities=11% Similarity=-0.090 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 038364 805 ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGS 881 (1076)
Q Consensus 805 ~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a 881 (1076)
..+..+...+...|++++|...|+...+. .| +...|..+...|.+.|++++|.+.+++. ...| +...|..+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34444555556666666666666655542 23 3445555555555666666666555553 2333 33455555555
Q ss_pred HHHcCCchHHHHHHHHHhcCCCCCc
Q 038364 882 CRIHGHLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 882 ~~~~g~~e~A~~~~~~l~~l~P~~~ 906 (1076)
+...|++++|+..++++++++|+++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCccch
Confidence 5555666666666666555555443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0003 Score=66.55 Aligned_cols=99 Identities=11% Similarity=-0.122 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 038364 804 AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGS 881 (1076)
Q Consensus 804 ~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a 881 (1076)
...+..+...+...|++++|...|+...+.. +.+...|..+...|.+.|++++|...+++. .. +.+...|..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 3444455555555666666666655554421 112445566666666666666666666654 22 2346678888888
Q ss_pred HHHcCCchHHHHHHHHHhcCCCC
Q 038364 882 CRIHGHLEYAEIASRRLFKLEPC 904 (1076)
Q Consensus 882 ~~~~g~~e~A~~~~~~l~~l~P~ 904 (1076)
+...|++++|+..++++++++|+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888888776
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00026 Score=79.36 Aligned_cols=65 Identities=9% Similarity=-0.095 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 872 ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 872 ~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
..+|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+..
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 46889999999999999999999999999999999999999999999999999999999986643
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00055 Score=69.80 Aligned_cols=94 Identities=10% Similarity=-0.081 Sum_probs=76.2
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCC
Q 038364 842 HYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-D----------------ATIWGALLGSCRIHGHLEYAEIASRRLFKLEP 903 (1076)
Q Consensus 842 ~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d----------------~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P 903 (1076)
.+..+...+.+.|++++|.+.+++. ...| + ..+|..+..++...|++++|+..++++++++|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 4455566666677777777666654 1111 1 26888889999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 904 CNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 904 ~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
+++..|..++.+|...|++++|.+.+++..+.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0001 Score=86.90 Aligned_cols=114 Identities=10% Similarity=-0.027 Sum_probs=78.7
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchH
Q 038364 814 CKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEY 890 (1076)
Q Consensus 814 ~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~ 890 (1076)
+...|++++|.+.|++..+. .|+ ...|..+...|.+.|++++|++.+++. ...| +...|..+..++...|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 34456666666666665542 233 456666666677777777777766665 2333 45678888888888899999
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHH--HHHcCChHHHHHHHH
Q 038364 891 AEIASRRLFKLEPCNSANYNLMMNL--LAMSNRWEDVERLRH 930 (1076)
Q Consensus 891 A~~~~~~l~~l~P~~~~~y~~L~~~--y~~~G~~~eA~~~~~ 930 (1076)
|+..++++++++|++...+..++.+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999888888888887 888888998888877
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0003 Score=82.70 Aligned_cols=101 Identities=15% Similarity=0.086 Sum_probs=73.9
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHHcCCchHHHHHHHHHhc-----CCCCC
Q 038364 841 EHYSCMVDLLGKAGYLDEAWDFIRTM---------PFKPDAT-IWGALLGSCRIHGHLEYAEIASRRLFK-----LEPCN 905 (1076)
Q Consensus 841 ~~y~~li~~l~r~G~l~eA~~l~~~m---------~~~pd~~-~~~~Ll~a~~~~g~~e~A~~~~~~l~~-----l~P~~ 905 (1076)
.+++.|..+|...|++++|+.++++. +..|+.. +++.|...|...|++++|+.+++++++ +.|++
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 35566666666666666666666553 2345543 688888889999999999999988876 46776
Q ss_pred chh---HHHHHHHHHHcCChHHHHHHHHHHHhCCCccCc
Q 038364 906 SAN---YNLMMNLLAMSNRWEDVERLRHSMDEVGVKSVL 941 (1076)
Q Consensus 906 ~~~---y~~L~~~y~~~G~~~eA~~~~~~m~~~g~~~~~ 941 (1076)
+.+ +..|...+...|++++|+.++.++++.-.+..|
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 544 678888999999999999999999886544444
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00031 Score=67.78 Aligned_cols=135 Identities=13% Similarity=0.070 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHH
Q 038364 771 SWNCMIMGFAIYGNGKEAILLFHELLETGF-QPDA----ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSC 845 (1076)
Q Consensus 771 s~n~li~~~~~~g~~~~Al~l~~~M~~~g~-~Pd~----~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~ 845 (1076)
+|..+...|...|++++|+..+++..+..- .++. .++..+...+...|++++|.+++++..+.
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------------ 78 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLL------------ 78 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------
Confidence 556666777777777777777776654210 0111 13333344444455555555544443321
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCC------CCchhHHHHHHHHHH
Q 038364 846 MVDLLGKAGYLDEAWDFIRTMPFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEP------CNSANYNLMMNLLAM 918 (1076)
Q Consensus 846 li~~l~r~G~l~eA~~l~~~m~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P------~~~~~y~~L~~~y~~ 918 (1076)
....+..+ ...++..+...+...|++++|...+++++++.+ .....+..++.+|..
T Consensus 79 -----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 141 (164)
T 3ro3_A 79 -----------------ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 141 (164)
T ss_dssp -----------------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----------------HHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence 00011001 133566666777777888888888777765422 123568889999999
Q ss_pred cCChHHHHHHHHHHHh
Q 038364 919 SNRWEDVERLRHSMDE 934 (1076)
Q Consensus 919 ~G~~~eA~~~~~~m~~ 934 (1076)
.|++++|.+.+++..+
T Consensus 142 ~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 142 LGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 9999999999888654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00053 Score=80.76 Aligned_cols=116 Identities=9% Similarity=0.017 Sum_probs=63.6
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 038364 744 LIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD-AITFTALLAACKNSGL 819 (1076)
Q Consensus 744 Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd-~~t~~~ll~a~~~~g~ 819 (1076)
+...|.+.|++++|.+.|++..+ .+...|..+..+|.+.|++++|++.|++..+. .|+ ...+..+..++...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 44556666777777777765432 34556666666677777777777777666663 443 3455555556666666
Q ss_pred HHHHHHHHHHhhhcCCCCCC-cccHHHHHHH--HHhcCCHHHHHHHHH
Q 038364 820 VEEGWKYFDSMSTDYNIIPT-IEHYSCMVDL--LGKAGYLDEAWDFIR 864 (1076)
Q Consensus 820 ~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~--l~r~G~l~eA~~l~~ 864 (1076)
+++|.+.|++..+. .|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666666666543 222 2233333333 445555555555554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0042 Score=69.07 Aligned_cols=189 Identities=12% Similarity=0.075 Sum_probs=103.8
Q ss_pred HHHHHHHhhcC-CHHHHHHHHHhcCC---CChHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 038364 742 TGLIDMYSKSG-NLKSAREVFRKSAN---KTLASWNCMIMGFAIY-G-NGKEAILLFHELLETGFQP-DAITFTALLAAC 814 (1076)
Q Consensus 742 ~~Li~~y~k~G-~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~-g-~~~~Al~l~~~M~~~g~~P-d~~t~~~ll~a~ 814 (1076)
+.--..+...| .++++.+.++.+.. ++...|+--...+.+. + +.++++++++++.+. .| |...|..-....
T Consensus 92 n~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--dpkNy~AW~~R~wvl 169 (349)
T 3q7a_A 92 QYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--DPKNYHTWAYLHWLY 169 (349)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 33333333444 35555555555442 3334555444444443 4 556666666666552 23 333444333333
Q ss_pred HhcCCHH--------HHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCC-------HHHHHHHHHhC-C-CCCCHHHHHH
Q 038364 815 KNSGLVE--------EGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGY-------LDEAWDFIRTM-P-FKPDATIWGA 877 (1076)
Q Consensus 815 ~~~g~~~--------eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~-------l~eA~~l~~~m-~-~~pd~~~~~~ 877 (1076)
.+.|..+ ++.++++++.+.. .-+...|+-...++.+.|+ ++++++.++++ . .+-|...|+-
T Consensus 170 ~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Y 247 (349)
T 3q7a_A 170 SHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNY 247 (349)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3333333 6666666666531 1234455555555555554 67777777665 2 3446778887
Q ss_pred HHHHHHHcCCc--------------------hHHHHHHHHHhcCC------CCCchhHHHHHHHHHHcCChHHHHHHHHH
Q 038364 878 LLGSCRIHGHL--------------------EYAEIASRRLFKLE------PCNSANYNLMMNLLAMSNRWEDVERLRHS 931 (1076)
Q Consensus 878 Ll~a~~~~g~~--------------------e~A~~~~~~l~~l~------P~~~~~y~~L~~~y~~~G~~~eA~~~~~~ 931 (1076)
+-..+.+.|+. ......+..+.... +..+-+...|+++|...|+.++|.++++.
T Consensus 248 lr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~ 327 (349)
T 3q7a_A 248 LRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEK 327 (349)
T ss_dssp HHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 77777776654 22222222232222 34556678999999999999999999999
Q ss_pred HHh
Q 038364 932 MDE 934 (1076)
Q Consensus 932 m~~ 934 (1076)
+.+
T Consensus 328 l~~ 330 (349)
T 3q7a_A 328 LSS 330 (349)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00057 Score=63.35 Aligned_cols=76 Identities=7% Similarity=-0.043 Sum_probs=45.6
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHH
Q 038364 842 HYSCMVDLLGKAGYLDEAWDFIRTMP-----FKPD----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLM 912 (1076)
Q Consensus 842 ~y~~li~~l~r~G~l~eA~~l~~~m~-----~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L 912 (1076)
.+..+...|.+.|++++|...+++.. ..++ ..+|..+..++...|++++|...+++++++.| ++.....+
T Consensus 40 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l 118 (131)
T 1elr_A 40 YITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34444444444455555544444431 1122 45677777788888888888888888888877 45555555
Q ss_pred HHHHHH
Q 038364 913 MNLLAM 918 (1076)
Q Consensus 913 ~~~y~~ 918 (1076)
..++..
T Consensus 119 ~~~~~~ 124 (131)
T 1elr_A 119 QQAEKI 124 (131)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0044 Score=68.54 Aligned_cols=191 Identities=11% Similarity=0.040 Sum_probs=100.3
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcC--CHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCC-HHHHHHHHH
Q 038364 720 QNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSG--NLKSAREVFRKSAN---KTLASWNCMIMGFAIYGN-GKEAILLFH 793 (1076)
Q Consensus 720 ~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G--~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~-~~~Al~l~~ 793 (1076)
+++..+.+.+++. .+-+..+|+.-...+.+.| .++++.++++.+.+ +|..+|+--.-.+...|. .+++++.++
T Consensus 91 ~~EL~~~~~~L~~-~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRV-NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 4445555555542 2224455555555555555 36777777766653 455566655555566666 467777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhc-----
Q 038364 794 ELLETGFQPDAITFTALLAACKNS--------------GLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKA----- 853 (1076)
Q Consensus 794 ~M~~~g~~Pd~~t~~~ll~a~~~~--------------g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~----- 853 (1076)
++.+.. .-|...|+.....+.+. +.++++.++++..... .|+ ...|+-+-.++.+.
T Consensus 170 ~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 170 SLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccc
Confidence 777632 22333444443333332 3456666666665542 233 33444333344433
Q ss_pred ------CCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-----HHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 038364 854 ------GYLDEAWDFIRTM-PFKPDATIWGALLGSC-----RIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLL 916 (1076)
Q Consensus 854 ------G~l~eA~~l~~~m-~~~pd~~~~~~Ll~a~-----~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y 916 (1076)
+.++++++.++++ ...||. .|..+..+. ...|..++....+.++.++||...+.|.-|..-+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 3466666666665 345554 343222221 1245566666777777777776655555554433
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00044 Score=79.82 Aligned_cols=162 Identities=7% Similarity=-0.098 Sum_probs=102.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHH---HHHHHH-HHHhcCCHHHHHHHHHHhhhc---CCCCCC-ccc
Q 038364 772 WNCMIMGFAIYGNGKEAILLFHELLET-GFQPDAIT---FTALLA-ACKNSGLVEEGWKYFDSMSTD---YNIIPT-IEH 842 (1076)
Q Consensus 772 ~n~li~~~~~~g~~~~Al~l~~~M~~~-g~~Pd~~t---~~~ll~-a~~~~g~~~eA~~~~~~m~~~---~g~~p~-~~~ 842 (1076)
+..+...|...|++++|.+.+.++... +..++..+ ....+. .+...|..+++.++++..... .+..+. ...
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 556677777777777777777766541 11122211 112222 233467778877777665432 122222 345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-------CCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCC---CCC----ch
Q 038364 843 YSCMVDLLGKAGYLDEAWDFIRTMP-------FKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLE---PCN----SA 907 (1076)
Q Consensus 843 y~~li~~l~r~G~l~eA~~l~~~m~-------~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~---P~~----~~ 907 (1076)
+..++..|...|++++|.+++++.. .++. ..++..++..|...|++++|...+++++.+. +++ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 6677888888888888888877641 1222 3367777788888899999998888877643 222 24
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHH
Q 038364 908 NYNLMMNLLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 908 ~y~~L~~~y~~~G~~~eA~~~~~~m~ 933 (1076)
.|..++.++...|++++|.+.+.+.-
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46777888888899998888776653
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.02 Score=63.63 Aligned_cols=160 Identities=11% Similarity=0.071 Sum_probs=101.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccC-CcHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 038364 364 WNEIIMVKLRNEKWENAIKLFREMQFSSAKAISR-TIVKMLQACAKVG-AFHEGKQIHGYVLKSALESNLSVCNCLISMY 441 (1076)
Q Consensus 364 ~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~-t~~~ll~a~~~~g-~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y 441 (1076)
|+.+-....+.+..++|+++++++... .|+.. .|+.--..+...+ +++++....+.+++...+ +..+|+.--..+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 333333444555667788888877764 34333 3555444445556 477777777777766533 455666555555
Q ss_pred HhC-C-ChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChH--------HHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038364 442 SRN-N-KLELATRVFDSMKD---HNLSSWNSMISSYTGLGYVD--------VAWSLFNKMNSSRIQPDIITWNCLLSGHF 508 (1076)
Q Consensus 442 ~k~-g-~~~~A~~lf~~m~~---~d~~s~n~lI~~~~~~g~~~--------~A~~lf~~M~~~g~~pd~~ty~~Li~~~~ 508 (1076)
.+. + +.+++..+++++.+ +|-..|+--...+.+.|..+ ++++.++++.+..+. |..+|+-....+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 554 5 67788888887754 35557776555555555555 788888888887766 7788887777777
Q ss_pred hcCC-------hhhHHHHHHHHHhcC
Q 038364 509 THGS-------YQNVLTLLRGMQSLG 527 (1076)
Q Consensus 509 ~~g~-------~~~Al~l~~~m~~~g 527 (1076)
+.++ ++++++.++++....
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~ 238 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI 238 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC
T ss_pred hccccccchHHHHHHHHHHHHHHHhC
Confidence 7665 466677766666544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0011 Score=61.88 Aligned_cols=100 Identities=15% Similarity=-0.009 Sum_probs=67.2
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCCc----ccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 038364 812 AACKNSGLVEEGWKYFDSMSTDYNIIPTI----EHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD----ATIWGALLGSC 882 (1076)
Q Consensus 812 ~a~~~~g~~~eA~~~~~~m~~~~g~~p~~----~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd----~~~~~~Ll~a~ 882 (1076)
..+...|++++|.+.|+.+.+.. |+. ..+..+...|.+.|++++|.+.+++. ...|+ ...+..+..++
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELY---PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC---SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHC---CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 34556666777777666665532 222 35556677777777777777777665 22233 45677778888
Q ss_pred HHcCCchHHHHHHHHHhcCCCCCchhHHHHHH
Q 038364 883 RIHGHLEYAEIASRRLFKLEPCNSANYNLMMN 914 (1076)
Q Consensus 883 ~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~ 914 (1076)
...|++++|...++++++..|+++........
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 88999999999999999999987654444333
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00053 Score=61.68 Aligned_cols=96 Identities=17% Similarity=0.050 Sum_probs=60.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHH
Q 038364 809 ALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP---DATIWGALLGSCRI 884 (1076)
Q Consensus 809 ~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p---d~~~~~~Ll~a~~~ 884 (1076)
.+...+...|++++|...|++..+.. ..+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~ 88 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY 88 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence 33344455555555555555554321 122345555666666666666666666664 2233 46678888888888
Q ss_pred c-CCchHHHHHHHHHhcCCCCCc
Q 038364 885 H-GHLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 885 ~-g~~e~A~~~~~~l~~l~P~~~ 906 (1076)
. |++++|+..++++++..|.++
T Consensus 89 ~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 89 IEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp CSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HhCCHHHHHHHHHHHhhcccCCC
Confidence 8 888888888888888888754
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00062 Score=77.32 Aligned_cols=136 Identities=13% Similarity=0.039 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHH
Q 038364 770 ASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVD 848 (1076)
Q Consensus 770 ~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~ 848 (1076)
..|..+...+.+.|++++|+..|++.++. .|+. ......+++.+ ..| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~~~~~~~----------~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDADGAK----------LQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHHHHGG----------GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccChHHHHH----------HHHHHHHHHHHHHH
Confidence 45777888888899999999888887761 1110 00011111111 112 2457788888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHH
Q 038364 849 LLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVE 926 (1076)
Q Consensus 849 ~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~ 926 (1076)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..+..++.+.++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886 4445 56789999999999999999999999999999999999999999999998888776
Q ss_pred H
Q 038364 927 R 927 (1076)
Q Consensus 927 ~ 927 (1076)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00025 Score=64.17 Aligned_cols=92 Identities=10% Similarity=-0.095 Sum_probs=75.1
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC------chhHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN------SANYNL 911 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~------~~~y~~ 911 (1076)
...+..+...+.+.|++++|.+.+++. .. +.+...|..+..++...|++++|+..++++++++|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 455667778888888888888888876 22 3467789999999999999999999999999999998 777888
Q ss_pred HHHHHHHcCChHHHHHHHHH
Q 038364 912 MMNLLAMSNRWEDVERLRHS 931 (1076)
Q Consensus 912 L~~~y~~~G~~~eA~~~~~~ 931 (1076)
++.++...|+.++|.+.+++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHHH
Confidence 88888888888777665544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00059 Score=61.20 Aligned_cols=66 Identities=20% Similarity=0.070 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 870 PDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 870 pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
-+...|..+...+...|++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456789999999999999999999999999999999999999999999999999999999987543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.016 Score=63.92 Aligned_cols=179 Identities=13% Similarity=0.101 Sum_probs=129.0
Q ss_pred HHHHHHHHHhcC---CCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHH
Q 038364 754 LKSAREVFRKSA---NKTLASWNCMIMGFAIYG--NGKEAILLFHELLETGFQPDAITFTALLAACKNSGL-VEEGWKYF 827 (1076)
Q Consensus 754 ~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g--~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~-~~eA~~~~ 827 (1076)
++++..+++.+. .++..+|+--...+...| .+++++..++++.+.. .-|...|+.--..+.+.|. ++++.+++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 567777777665 357788987777777777 4899999999999843 3355677776667777887 69999999
Q ss_pred HHhhhcCCCCCCcccHHHHHHHHHhc--------------CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHc------
Q 038364 828 DSMSTDYNIIPTIEHYSCMVDLLGKA--------------GYLDEAWDFIRTM--PFKPDATIWGALLGSCRIH------ 885 (1076)
Q Consensus 828 ~~m~~~~g~~p~~~~y~~li~~l~r~--------------G~l~eA~~l~~~m--~~~pd~~~~~~Ll~a~~~~------ 885 (1076)
+.+.+.. .-|...|+-...++.+. +.++++++++++. ..+-|...|+-+-..+...
T Consensus 169 ~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 9998752 23455666666565554 5688999999886 2345778898776665554
Q ss_pred -----CCchHHHHHHHHHhcCCCCCchhHHHHHHHH---HHcCChHHHHHHHHHHHhC
Q 038364 886 -----GHLEYAEIASRRLFKLEPCNSANYNLMMNLL---AMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 886 -----g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y---~~~G~~~eA~~~~~~m~~~ 935 (1076)
+.+++++..++++++++|++.-.+..++.+. ...|..+++...+.++.+.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4578999999999999999854444333322 2357778888888888653
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0007 Score=63.19 Aligned_cols=94 Identities=14% Similarity=0.016 Sum_probs=61.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 038364 810 LLAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHG 886 (1076)
Q Consensus 810 ll~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g 886 (1076)
+...+...|++++|...|+...+. .| +...|..+..++.+.|++++|+..+++. ...| +...|..+..++...|
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 334455666677776666666543 33 3556666677777777777777777665 2334 4567888888888888
Q ss_pred CchHHHHHHHHHhcCCCCCc
Q 038364 887 HLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 887 ~~e~A~~~~~~l~~l~P~~~ 906 (1076)
++++|+..++++++++|++.
T Consensus 100 ~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHhCcCCC
Confidence 99999999999998888753
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00064 Score=65.50 Aligned_cols=135 Identities=11% Similarity=0.011 Sum_probs=88.4
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHhcCC-----CCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----
Q 038364 738 AYVATGLIDMYSKSGNLKSAREVFRKSAN-----KTL----ASWNCMIMGFAIYGNGKEAILLFHELLETGF-QPD---- 803 (1076)
Q Consensus 738 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d~----~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~-~Pd---- 803 (1076)
..++..+...|...|++++|.+.+++..+ .+. .++..+...+...|++++|+..+++..+..- .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 35678899999999999999999987653 222 4778899999999999999999999775210 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 038364 804 AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKP-DATIWGALLGSC 882 (1076)
Q Consensus 804 ~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~p-d~~~~~~Ll~a~ 882 (1076)
...+..+...+...|++++|.+++++..+. .++.+..+ ...++..+...+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----------------------------~~~~~~~~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAI-----------------------------AQELKDRIGEGRACWSLGNAY 139 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----------------------------HHHccchHhHHHHHHHHHHHH
Confidence 224455555566777777777776655431 11111001 122455556666
Q ss_pred HHcCCchHHHHHHHHHhcC
Q 038364 883 RIHGHLEYAEIASRRLFKL 901 (1076)
Q Consensus 883 ~~~g~~e~A~~~~~~l~~l 901 (1076)
...|++++|...+++.+++
T Consensus 140 ~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHH
Confidence 6777777777777766654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00036 Score=78.21 Aligned_cols=147 Identities=12% Similarity=-0.015 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHH
Q 038364 769 LASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVD 848 (1076)
Q Consensus 769 ~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~ 848 (1076)
...|..+...+.+.|++++|+..|++..+ +.|+...+ ...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-------~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFMF-------QLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHHH-------TCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchhh-------hhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 35677888888999999999999999887 45665422 23344444443221 236778888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH-HcCChHHH
Q 038364 849 LLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA-MSNRWEDV 925 (1076)
Q Consensus 849 ~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~-~~G~~~eA 925 (1076)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..|..+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998886 3334 56789999999999999999999999999999999999888888844 45667788
Q ss_pred HHHHHHHHhC
Q 038364 926 ERLRHSMDEV 935 (1076)
Q Consensus 926 ~~~~~~m~~~ 935 (1076)
.+++++|.+.
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888887543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0015 Score=61.54 Aligned_cols=60 Identities=8% Similarity=0.032 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 038364 771 SWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMST 832 (1076)
Q Consensus 771 s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~ 832 (1076)
.|..+...+.+.|++++|++.|++.++ +.|+. ..|..+..+|...|++++|.+.++...+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 455566666667777777777766666 34443 3455555566666666666666665543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0013 Score=74.66 Aligned_cols=111 Identities=8% Similarity=-0.047 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHH
Q 038364 806 TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKP-DATIWGALLGSCRI 884 (1076)
Q Consensus 806 t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~p-d~~~~~~Ll~a~~~ 884 (1076)
.+..+...+...|++++|.+.|++..+.. |. ....-..+++.+ ..| +..+|..+..++.+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~----------~~~~~~~~~~~~------~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EG----------SRAAAEDADGAK------LQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HH----------HHHHSCHHHHGG------GHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hc----------CccccChHHHHH------HHHHHHHHHHHHHHHHHh
Confidence 46666667777888888888777765420 00 000011111111 122 34688889999999
Q ss_pred cCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 885 HGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 885 ~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
.|++++|+..++++++++|+++.+|..++.+|.+.|++++|.+.+++..+.
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00091 Score=57.91 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=63.0
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
...+..+...+.+.|++++|.+.+++. .. +.+..+|..+...+...|++++|+..++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345566677777778888887777765 22 3356678888888889999999999999999999998888888888887
Q ss_pred HcC
Q 038364 918 MSN 920 (1076)
Q Consensus 918 ~~G 920 (1076)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0017 Score=76.03 Aligned_cols=65 Identities=12% Similarity=-0.000 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 872 ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 872 ~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 46888899999999999999999999999999999999999999999999999999999986543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0039 Score=74.86 Aligned_cols=169 Identities=11% Similarity=0.017 Sum_probs=131.3
Q ss_pred cCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh
Q 038364 751 SGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGN----------GKEAILLFHELLETGFQPDA-ITFTALLAACKN 816 (1076)
Q Consensus 751 ~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~----------~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~ 816 (1076)
...-++|.+.++.+.. .+...|+.--..+...|+ ++++++.++++.+ ..|.. ..|..-...+.+
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 3344667777777653 345677766666666666 8899999999988 44544 577777777888
Q ss_pred cC--CHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcC-CHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHc-----
Q 038364 817 SG--LVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAG-YLDEAWDFIRTM-PF-KPDATIWGALLGSCRIH----- 885 (1076)
Q Consensus 817 ~g--~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G-~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~----- 885 (1076)
.| +++++.+.++++.+. .| +...|+--..++.+.| ..+++.++++++ .. .-|...|+.....+...
T Consensus 120 l~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 120 LPEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred cccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 88 779999999999864 34 3556777777888888 899999999988 33 34677899888887663
Q ss_pred ---------CCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHH
Q 038364 886 ---------GHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWED 924 (1076)
Q Consensus 886 ---------g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~e 924 (1076)
+.++++.+.++++++++|++..+|..+..++.+.|+.++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999998555
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00021 Score=66.19 Aligned_cols=93 Identities=11% Similarity=-0.020 Sum_probs=59.2
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHH
Q 038364 817 SGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEI 893 (1076)
Q Consensus 817 ~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~ 893 (1076)
.|++++|...|++..+...-.|+ ...+..+...|.+.|++++|.+.+++. ...| +..+|..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 35556666666665532000122 445666667777777777777777665 2223 45677788888888888999999
Q ss_pred HHHHHhcCCCCCchhH
Q 038364 894 ASRRLFKLEPCNSANY 909 (1076)
Q Consensus 894 ~~~~l~~l~P~~~~~y 909 (1076)
.++++++..|+++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 9998888888876543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00067 Score=62.23 Aligned_cols=78 Identities=12% Similarity=0.047 Sum_probs=65.0
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 858 EAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 858 eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
+|.+.+++. ...| +...|..+...+...|++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555554 3333 56788889999999999999999999999999999999999999999999999999999988553
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00042 Score=67.65 Aligned_cols=69 Identities=12% Similarity=0.057 Sum_probs=48.9
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCHH-HH----HHHHHHHHHcCCchHHHHHHHHHhcCCCCCchh
Q 038364 842 HYSCMVDLLGKAGYLDEAWDFIRTM--------PFKPDAT-IW----GALLGSCRIHGHLEYAEIASRRLFKLEPCNSAN 908 (1076)
Q Consensus 842 ~y~~li~~l~r~G~l~eA~~l~~~m--------~~~pd~~-~~----~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~ 908 (1076)
.|..+..++.+.|++++|+..+++. .+.||.. .| .....++...|++++|+..|+++++++|++.+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 3444444455555555554444432 3477654 78 899999999999999999999999999998655
Q ss_pred HH
Q 038364 909 YN 910 (1076)
Q Consensus 909 y~ 910 (1076)
+.
T Consensus 139 ~~ 140 (159)
T 2hr2_A 139 TP 140 (159)
T ss_dssp CT
T ss_pred HH
Confidence 43
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0006 Score=76.42 Aligned_cols=151 Identities=15% Similarity=0.073 Sum_probs=78.8
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 038364 738 AYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNS 817 (1076)
Q Consensus 738 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~ 817 (1076)
...+..+...|.+.|++++|...|++....+.... .+...|+.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 34577888999999999999999988653222111 1223333444433221 12566677778888
Q ss_pred CCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHH-HHHcCCchHHHH
Q 038364 818 GLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPDA-TIWGALLGS-CRIHGHLEYAEI 893 (1076)
Q Consensus 818 g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd~-~~~~~Ll~a-~~~~g~~e~A~~ 893 (1076)
|++++|...++...+. .| +...|..+..+|...|++++|.+.|++. ...|+. ..+..|... ....+..+.+..
T Consensus 244 g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888753 34 4667888889999999999999999887 455544 355555544 345577888899
Q ss_pred HHHHHhcCCCCCc
Q 038364 894 ASRRLFKLEPCNS 906 (1076)
Q Consensus 894 ~~~~l~~l~P~~~ 906 (1076)
.++++++..|+++
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 9999999998764
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00077 Score=66.19 Aligned_cols=127 Identities=16% Similarity=0.017 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHH
Q 038364 770 ASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVD 848 (1076)
Q Consensus 770 ~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~ 848 (1076)
..|......+.+.|++++|+..|++..+. +............. +..+ .| +...|..+..
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~------------~~~~~~~~~~~~~~--~~~~------~~~~~~~~~nla~ 71 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTR------------LDTLILREKPGEPE--WVEL------DRKNIPLYANMSQ 71 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHTSCTTSHH--HHHH------HHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------HHHhcccCCCCHHH--HHHH------HHHHHHHHHHHHH
Confidence 45667777777788888888887777652 00000000000000 0000 11 2346777888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCc-hhHHHHHHHH
Q 038364 849 LLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNS-ANYNLMMNLL 916 (1076)
Q Consensus 849 ~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~-~~y~~L~~~y 916 (1076)
+|.+.|++++|...+++. ...| +...|..+..++...|++++|...++++++++|+++ .....|..+.
T Consensus 72 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 72 CYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 888888888888888776 2334 567899999999999999999999999999999987 4444554444
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0023 Score=73.67 Aligned_cols=157 Identities=8% Similarity=-0.073 Sum_probs=113.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCc-
Q 038364 778 GFAIYGNGKEAILLFHELLETGFQPD----------------AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTI- 840 (1076)
Q Consensus 778 ~~~~~g~~~~Al~l~~~M~~~g~~Pd----------------~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~- 840 (1076)
.+.+.|++++|++.|.+..+..-... ...+..+...|...|++++|.+++..+....+-.++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 35566777888887777776321111 1236677888999999999999999887643333332
Q ss_pred ---ccHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcC------CC
Q 038364 841 ---EHYSCMVDLLGKAGYLDEAWDFIRTM-------PFKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKL------EP 903 (1076)
Q Consensus 841 ---~~y~~li~~l~r~G~l~eA~~l~~~m-------~~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l------~P 903 (1076)
...+.+...+...|+.++|.+++++. ...+. ..++..|...+...|++++|...++++... .|
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 23334445555778999999888765 22333 457888899999999999999999988753 22
Q ss_pred CCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 904 CNSANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 904 ~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
.....|..++.+|...|++++|...+++...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 2346799999999999999999999988754
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0012 Score=77.53 Aligned_cols=114 Identities=12% Similarity=0.008 Sum_probs=83.5
Q ss_pred HHhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHHcCCchHHHHHHHHHhc-----CCCCCc---hhHHH
Q 038364 850 LGKAGYLDEAWDFIRTM---------PFKPDA-TIWGALLGSCRIHGHLEYAEIASRRLFK-----LEPCNS---ANYNL 911 (1076)
Q Consensus 850 l~r~G~l~eA~~l~~~m---------~~~pd~-~~~~~Ll~a~~~~g~~e~A~~~~~~l~~-----l~P~~~---~~y~~ 911 (1076)
+...|++++|+.++++. +..|+. .+++.|..+|...|++++|+.+++++++ +.|+++ ..|+.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777776666553 134443 3789999999999999999999999886 356665 45889
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCccCcceEEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHH
Q 038364 912 MMNLLAMSNRWEDVERLRHSMDEVGVKSVLVWSWIQIDQIVHVFSAEGAPHPATGEIYFELYHLVSEMKK 981 (1076)
Q Consensus 912 L~~~y~~~G~~~eA~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~ 981 (1076)
|+.+|..+|++++|+.++++..+.-. + .-+..||...++...+.....++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~-~-----------------~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILL-V-----------------THGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH-H-----------------HTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHH-H-----------------HhCCCChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998754210 0 0123699888887777766655543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00045 Score=67.30 Aligned_cols=86 Identities=7% Similarity=-0.041 Sum_probs=66.9
Q ss_pred HhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCC----------chHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 038364 851 GKAGYLDEAWDFIRTM-PFK-PDATIWGALLGSCRIHGH----------LEYAEIASRRLFKLEPCNSANYNLMMNLLAM 918 (1076)
Q Consensus 851 ~r~G~l~eA~~l~~~m-~~~-pd~~~~~~Ll~a~~~~g~----------~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~ 918 (1076)
.|.+++++|.+.+++. ... .+...|..+..++...++ +++|+..++++++++|++..+|+.++++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3555667777666665 222 355567667666666655 4699999999999999999999999999998
Q ss_pred cC-----------ChHHHHHHHHHHHhCC
Q 038364 919 SN-----------RWEDVERLRHSMDEVG 936 (1076)
Q Consensus 919 ~G-----------~~~eA~~~~~~m~~~g 936 (1076)
.| ++++|.+.+++..+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 75 8999999999997654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0013 Score=75.94 Aligned_cols=90 Identities=11% Similarity=0.130 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhc-----CCCCCc---hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCccCcceEE
Q 038364 874 IWGALLGSCRIHGHLEYAEIASRRLFK-----LEPCNS---ANYNLMMNLLAMSNRWEDVERLRHSMDEVGVKSVLVWSW 945 (1076)
Q Consensus 874 ~~~~Ll~a~~~~g~~e~A~~~~~~l~~-----l~P~~~---~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g~~~~~~~sw 945 (1076)
+++.|..+|...|++++|+.+++++++ +.|+++ ..|+.|+.+|..+|++++|+.++++..+.- .+
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~-~~------ 403 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM-RV------ 403 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HH------
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HH------
Confidence 667777777778888888888777765 345554 458899999999999999999999875421 00
Q ss_pred EEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHH
Q 038364 946 IQIDQIVHVFSAEGAPHPATGEIYFELYHLVSEMKK 981 (1076)
Q Consensus 946 i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~ 981 (1076)
.-+..||...+++..+.+...+|+.
T Consensus 404 -----------~lG~~Hp~~~~~~~~l~~~~~e~~~ 428 (429)
T 3qwp_A 404 -----------THGREHSLIEDLILLLEECDANIRA 428 (429)
T ss_dssp -----------HTCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred -----------hcCCCChHHHHHHHHHHHHHHHHhc
Confidence 0123699999999999988888763
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0036 Score=55.38 Aligned_cols=69 Identities=17% Similarity=0.107 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHHcCC---chHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 038364 869 KPDATIWGALLGSCRIHGH---LEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVGV 937 (1076)
Q Consensus 869 ~pd~~~~~~Ll~a~~~~g~---~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g~ 937 (1076)
++|+..|..+..++...++ .++|...++++++++|+++.+...+++.+.+.|++++|.+.++++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4577788888888766655 79999999999999999999999999999999999999999999987653
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0025 Score=57.38 Aligned_cols=67 Identities=12% Similarity=-0.011 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 870 PDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 870 pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
++...|..+...+...|++++|+..++++++++|+++..+..++.+|.+.|++++|.+.+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3566788899999999999999999999999999999999999999999999999999999986543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.011 Score=70.90 Aligned_cols=150 Identities=11% Similarity=0.022 Sum_probs=122.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCC----------HHHHHHHHHHhhhcCCCCCC-cccHHHHHHH
Q 038364 782 YGNGKEAILLFHELLETGFQPDAIT-FTALLAACKNSGL----------VEEGWKYFDSMSTDYNIIPT-IEHYSCMVDL 849 (1076)
Q Consensus 782 ~g~~~~Al~l~~~M~~~g~~Pd~~t-~~~ll~a~~~~g~----------~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~ 849 (1076)
....++|++.++++.+ +.|+..| |+.--.++.+.|. ++++.+.++.+.+. .|. ...|..-..+
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 3445789999999998 6787754 5555555555666 89999999999864 344 5577777888
Q ss_pred HHhcC--CHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcC-CchHHHHHHHHHhcCCCCCchhHHHHHHHHHHc-----
Q 038364 850 LGKAG--YLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHG-HLEYAEIASRRLFKLEPCNSANYNLMMNLLAMS----- 919 (1076)
Q Consensus 850 l~r~G--~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g-~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~----- 919 (1076)
+.+.| ++++|+++++++ . .+.+...|+.-..+....| ..+++...++++++.+|.|..+|...+.++.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 88999 779999999998 2 3457789999999999999 899999999999999999999999999998884
Q ss_pred ---------CChHHHHHHHHHHHhCC
Q 038364 920 ---------NRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 920 ---------G~~~eA~~~~~~m~~~g 936 (1076)
+++++|.+.+++..+..
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhC
Confidence 56789999988876644
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0055 Score=52.74 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 872 ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 872 ~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
...|..+...+...|++++|+..++++++++|+++..+..++.+|.+.|++++|.+.+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4578888889999999999999999999999999999999999999999999999999998654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0053 Score=70.83 Aligned_cols=61 Identities=11% Similarity=0.010 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhc-----CCCCCc---hhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 874 IWGALLGSCRIHGHLEYAEIASRRLFK-----LEPCNS---ANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 874 ~~~~Ll~a~~~~g~~e~A~~~~~~l~~-----l~P~~~---~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
+++.|..+|...|++++|+.+++++++ +.|+++ ..|+.|+.+|..+|+++||+.++++..+
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 677777777778888888877777765 355554 4589999999999999999999998754
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.016 Score=55.30 Aligned_cols=64 Identities=8% Similarity=-0.103 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHH----cCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHH----cCChHHHHHHHHHHHhCC
Q 038364 871 DATIWGALLGSCRI----HGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAM----SNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 871 d~~~~~~Ll~a~~~----~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~----~G~~~eA~~~~~~m~~~g 936 (1076)
+...+..|...|.. .+|.++|...++++.+. .++..+..|+.+|.. .+++++|.+.+++..+.|
T Consensus 56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 34444445555544 55666666666666654 345667777777777 677777777777776665
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.01 Score=56.68 Aligned_cols=113 Identities=12% Similarity=-0.053 Sum_probs=89.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh----cCCHH
Q 038364 782 YGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGK----AGYLD 857 (1076)
Q Consensus 782 ~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r----~G~l~ 857 (1076)
.++.++|+++|++..+.| .|+.. +-..|...+.+++|.++|++..+. -++..+..|..+|.+ .++.+
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 346788999999998887 55554 455567777888899999988764 356777888888888 88999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHhcCCC
Q 038364 858 EAWDFIRTMPFKPDATIWGALLGSCRI----HGHLEYAEIASRRLFKLEP 903 (1076)
Q Consensus 858 eA~~l~~~m~~~pd~~~~~~Ll~a~~~----~g~~e~A~~~~~~l~~l~P 903 (1076)
+|.+++++.-..-+...+..|...|.. .+|.++|...++++.+...
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999887434677788888888888 8999999999999988753
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0012 Score=74.43 Aligned_cols=201 Identities=14% Similarity=0.109 Sum_probs=107.8
Q ss_pred CCchhhhHHHHHHHccCChhhHHHHhhhcCCCCcccHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 038364 225 NSDDMVKSLIFHYLEFGDFTSAAKAFFLYFSRSYADWSSFLEDYESFGGEVQELLEVWGELHGKGVIFRSRILTIILKLC 304 (1076)
Q Consensus 225 ~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~wn~li~~~~~~g~~~~~al~lf~~m~~~g~~p~~~t~~~ll~a~ 304 (1076)
..+-++..|-.++.+.|+..+|...| +...|+..|..+|.+..+.|.+ ++-+..+...++. .+ ++..=+.++-++
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~-edLv~yL~MaRk~-~k-e~~IDteLi~ay 126 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNW-EELVKYLQMARKK-AR-ESYVETELIFAL 126 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCC-TTHHHHHHTTSTT-CC-STTTTHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCH-HHHHHHHHHHHHH-hc-ccccHHHHHHHH
Confidence 44567777777777777777776665 3345555667778877788877 6665555443333 22 223335666777
Q ss_pred hccCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhcCC-----------------------CCCh
Q 038364 305 TKLMAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSD-----------------------LEDD 361 (1076)
Q Consensus 305 ~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~-----------------------~~d~ 361 (1076)
++.+++.+-..... .||+.--..+-+-+...|.++.|+-+|..++. ..++
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 77766544322211 24444444555566667777777777776654 0134
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Q 038364 362 LLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSAL-ESNLSVCNCLISM 440 (1076)
Q Consensus 362 ~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~-~~d~~v~n~Li~~ 440 (1076)
-+|-.+-.+|+..+.+.-|.-.--.+.- .|| -+..++.-|-..|.+++-.++++.-+ |+ .....+++-|.-.
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaIL 272 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAIL 272 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHH
Confidence 4555555555555555544433333321 111 11233444445555555444444332 22 2344556666666
Q ss_pred HHhC
Q 038364 441 YSRN 444 (1076)
Q Consensus 441 y~k~ 444 (1076)
|+|-
T Consensus 273 YsKY 276 (624)
T 3lvg_A 273 YSKF 276 (624)
T ss_dssp HHSS
T ss_pred HHhc
Confidence 6654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0079 Score=54.86 Aligned_cols=79 Identities=13% Similarity=0.025 Sum_probs=54.1
Q ss_pred HHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHh
Q 038364 823 GWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHLEYAEIASRRLF 899 (1076)
Q Consensus 823 A~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~ 899 (1076)
+.+.|+...+ ..| +...+..+...|.+.|++++|.+.+++. .. +.+...|..+..++...|++++|+..+++++
T Consensus 4 a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555543 223 3456666777777777777777777665 22 2346678888888888888888888888888
Q ss_pred cCCCC
Q 038364 900 KLEPC 904 (1076)
Q Consensus 900 ~l~P~ 904 (1076)
++.|+
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 87764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.1 Score=65.21 Aligned_cols=151 Identities=15% Similarity=0.154 Sum_probs=100.5
Q ss_pred HhCCCHHHHHH-HHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHH
Q 038364 578 VKNDCLQNAQE-VFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVII 656 (1076)
Q Consensus 578 ~k~g~~~~A~~-lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf 656 (1076)
...+++++|.+ ++..++.+ .....++..+.+.|..++|+++.+.-. .-.......|++++|.++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~~~--~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEGK--DSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCCH--HHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCCch--HHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHH
Confidence 45678888877 66444411 122677777888888888887664221 1134456789999999887
Q ss_pred HHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCC
Q 038364 657 HHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIK 736 (1076)
Q Consensus 657 ~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~ 736 (1076)
+.+ .+...|..+...+.+.|+++.|.+.|.++.+ |..+...+...++.+...++.+.+...|
T Consensus 676 ~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~--- 737 (814)
T 3mkq_A 676 TDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG--- 737 (814)
T ss_dssp TTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT---
T ss_pred Hhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC---
Confidence 655 3678899999999999999999999998853 3444445555666666655555555433
Q ss_pred ChhhHHHHHHHHhhcCCHHHHHHHHHh
Q 038364 737 DAYVATGLIDMYSKSGNLKSAREVFRK 763 (1076)
Q Consensus 737 d~~~~~~Li~~y~k~G~~~~A~~vf~~ 763 (1076)
-++.-...|.++|++++|.+++.+
T Consensus 738 ---~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 738 ---KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---chHHHHHHHHHcCCHHHHHHHHHH
Confidence 223444556667777777766544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.052 Score=60.24 Aligned_cols=164 Identities=15% Similarity=0.084 Sum_probs=89.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHH--HcCC---HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc
Q 038364 744 LIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFA--IYGN---GKEAILLFHELLETGFQPDAI-TFTALLAACKNS 817 (1076)
Q Consensus 744 Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~--~~g~---~~~Al~l~~~M~~~g~~Pd~~-t~~~ll~a~~~~ 817 (1076)
++.+..-.-...++.+.... ...+...|...+.+.. ..+. ..+|+.+|++..+ ..|+.. .+..+.-++.
T Consensus 170 I~~aL~~~l~~~e~~r~~~~-~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~-- 244 (372)
T 3ly7_A 170 LSKALNQPWPQRMQETLQKI-LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDI-- 244 (372)
T ss_dssp HHHHTTCCCCHHHHHHHHHH-SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH--
T ss_pred HHHHhCchhhHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH--
Confidence 33333333333333333333 3456777777765543 2333 4789999999998 688854 3333333332
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCchHHHHHHH
Q 038364 818 GLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMP-FKPDATIWGALLGSCRIHGHLEYAEIASR 896 (1076)
Q Consensus 818 g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~ 896 (1076)
..... + |.... . +. .+.+|.+-...+. .+.++.+|.++.......|++++|...++
T Consensus 245 --------~~~~~----~--~~~~~--~-~~------~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~ 301 (372)
T 3ly7_A 245 --------VRHSQ----H--PLDEK--Q-LA------ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAIN 301 (372)
T ss_dssp --------HHHHH----S--CCCHH--H-HH------HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred --------HHhcc----C--CCchh--h-HH------HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 00000 1 11100 0 00 1122333223332 23456666666666666677777777777
Q ss_pred HHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 897 RLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 897 ~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
++++++|+ ...|..++.++.-.|++++|.+.+++.....
T Consensus 302 rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 302 TGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 77777763 4566777777777777777777777765554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0047 Score=60.11 Aligned_cols=51 Identities=12% Similarity=0.089 Sum_probs=37.5
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-----------CCchHHHHHHHHHhcCCCCCc
Q 038364 856 LDEAWDFIRTM-PFKP-DATIWGALLGSCRIH-----------GHLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 856 l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~-----------g~~e~A~~~~~~l~~l~P~~~ 906 (1076)
+++|+..|++. .+.| +...|..+..+|... |++++|+..|+++++++|++.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 34666666664 3344 345677777777665 589999999999999999974
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.025 Score=49.61 Aligned_cols=79 Identities=14% Similarity=0.115 Sum_probs=59.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCCh
Q 038364 846 MVDLLGKAGYLDEAWDFIRTM-PFKP-DAT-IWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRW 922 (1076)
Q Consensus 846 li~~l~r~G~l~eA~~l~~~m-~~~p-d~~-~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~ 922 (1076)
....+.+.|++++|.+.+++. ...| +.. .|..+..++...|++++|+..++++++++|+++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 456677888888888888876 2334 556 88888889999999999999999999999998877632 445
Q ss_pred HHHHHHHHHH
Q 038364 923 EDVERLRHSM 932 (1076)
Q Consensus 923 ~eA~~~~~~m 932 (1076)
.+|...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.019 Score=50.51 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=54.0
Q ss_pred HHHHHHHcCCchHHHHHHHHHhcCCCCCch-hHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 878 LLGSCRIHGHLEYAEIASRRLFKLEPCNSA-NYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 878 Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~-~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
....+...|++++|+..++++++.+|+++. .+..++.+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455678899999999999999999999999 99999999999999999999999987654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.062 Score=61.88 Aligned_cols=68 Identities=18% Similarity=0.007 Sum_probs=43.3
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHHcCCchHHHHHHHHHhc-----CCCCCc
Q 038364 842 HYSCMVDLLGKAGYLDEAWDFIRTM---------PFKPDAT-IWGALLGSCRIHGHLEYAEIASRRLFK-----LEPCNS 906 (1076)
Q Consensus 842 ~y~~li~~l~r~G~l~eA~~l~~~m---------~~~pd~~-~~~~Ll~a~~~~g~~e~A~~~~~~l~~-----l~P~~~ 906 (1076)
+++.+..+|...|++++|+.++++. +..|+.. +++.|...|...|++++|+..++++++ +.|+++
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp 410 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS 410 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3444555555555555555555443 2344433 677888888888888888888888775 467776
Q ss_pred hhH
Q 038364 907 ANY 909 (1076)
Q Consensus 907 ~~y 909 (1076)
.+-
T Consensus 411 ~~~ 413 (429)
T 3qwp_A 411 LIE 413 (429)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.067 Score=66.92 Aligned_cols=154 Identities=12% Similarity=0.017 Sum_probs=88.0
Q ss_pred hcCCHHHHHH-HHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038364 750 KSGNLKSARE-VFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFD 828 (1076)
Q Consensus 750 k~G~~~~A~~-vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~ 828 (1076)
..+++++|.+ ++..++. ......++..+.+.|..++|+++.++... - .......|++++|.++.+
T Consensus 611 ~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~~~~--------~----f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPDQDQ--------K----FELALKVGQLTLARDLLT 676 (814)
T ss_dssp HTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCCHHH--------H----HHHHHHHTCHHHHHHHHT
T ss_pred HhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCCcch--------h----eehhhhcCCHHHHHHHHH
Confidence 4567777766 4433320 11226666677777777777765532111 1 122345678888877654
Q ss_pred HhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCC----------CCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038364 829 SMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPF----------KPDATIWGALLGSCRIHGHLEYAEIASRRL 898 (1076)
Q Consensus 829 ~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~----------~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l 898 (1076)
.+ .+...|..+.+++.+.|+++.|++.|.+++. .-+...+..+.......|+++.|..++.+.
T Consensus 677 ~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~ 749 (814)
T 3mkq_A 677 DE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIA 749 (814)
T ss_dssp TC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHc
Confidence 33 3456778888888888888888888877642 112222333344444455555555444432
Q ss_pred hcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 899 FKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 899 ~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
+-+....++|.+.++|++|..+.++.
T Consensus 750 --------g~~~~a~~~~~~~~~~~~A~~lA~~~ 775 (814)
T 3mkq_A 750 --------GDIQGAKDLLIKSQRFSEAAFLGSTY 775 (814)
T ss_dssp --------TCHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred --------CCHHHHHHHHHHcCChHHHHHHHHHh
Confidence 22344566677777777777766653
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.038 Score=63.66 Aligned_cols=67 Identities=7% Similarity=-0.049 Sum_probs=41.7
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHHcCCchHHHHHHHHHhc-----CCCCCc
Q 038364 842 HYSCMVDLLGKAGYLDEAWDFIRTM---------PFKPDAT-IWGALLGSCRIHGHLEYAEIASRRLFK-----LEPCNS 906 (1076)
Q Consensus 842 ~y~~li~~l~r~G~l~eA~~l~~~m---------~~~pd~~-~~~~Ll~a~~~~g~~e~A~~~~~~l~~-----l~P~~~ 906 (1076)
+++.|..+|...|++++|+.++++. +..|+.. +++.|...|..+|++++|+.+++++++ +.|+++
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp 421 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHP 421 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3444444455555555554444443 2345543 678888888888888888888888776 367665
Q ss_pred hh
Q 038364 907 AN 908 (1076)
Q Consensus 907 ~~ 908 (1076)
.+
T Consensus 422 ~~ 423 (433)
T 3qww_A 422 YI 423 (433)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=94.89 E-value=0.099 Score=58.04 Aligned_cols=39 Identities=5% Similarity=-0.083 Sum_probs=34.5
Q ss_pred HhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 898 LFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 898 l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
..+.+|.++.+|..++..+...|++++|...++++.+.+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 346789999999999999988999999999999998775
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.80 E-value=1.7 Score=40.31 Aligned_cols=140 Identities=13% Similarity=0.072 Sum_probs=91.8
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHH
Q 038364 780 AIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEA 859 (1076)
Q Consensus 780 ~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA 859 (1076)
...|..++..++..+.... .+..-++-++.-...+-+-+-..+.++.+-+-+.+.+ +|.+...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~--------------C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHh--------------hhcHHHH
Confidence 3456677777777776652 2333444455444445555556666666644433332 3444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCCCc
Q 038364 860 WDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVGVK 938 (1076)
Q Consensus 860 ~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g~~ 938 (1076)
...+-.+. .+..-....++....+|.-|+-.++...++.-+|-+++...-++++|.+.|...+|.+++++.=++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 44444433 233344556777888899999999998876666667889999999999999999999999999999975
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=94.72 E-value=0.063 Score=47.55 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 038364 770 ASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD-AITFTALLAACKNSGLVEEGWKYFDSM 830 (1076)
Q Consensus 770 ~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd-~~t~~~ll~a~~~~g~~~eA~~~~~~m 830 (1076)
..|..+...|...|++++|+..|++..+. .|+ ...|..+..++...|++++|.+.|++.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444444444444444444444442 222 223344444444444444444444443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.44 E-value=0.15 Score=48.98 Aligned_cols=65 Identities=3% Similarity=-0.162 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHHcC---CchHHHHHHHHHhcCC-C-CCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 870 PDATIWGALLGSCRIHG---HLEYAEIASRRLFKLE-P-CNSANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 870 pd~~~~~~Ll~a~~~~g---~~e~A~~~~~~l~~l~-P-~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
++..+.-.+..++.+.+ ++++|+.+++.+++.+ | ++.+.++.|+-.|.+.|++++|.+.++...+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45555555555555555 4446666666666655 4 3345556666666666666666666666543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.96 E-value=0.0011 Score=74.82 Aligned_cols=261 Identities=13% Similarity=0.105 Sum_probs=139.8
Q ss_pred ChHHHHHHHHHHhcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038364 328 DVHLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACA 407 (1076)
Q Consensus 328 d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~ 407 (1076)
.+.+|+.|-.++.+.|.+.+|...|-+ . .|...|..+|....+.|.+++-+..+...++..-.|. .=+.++-+++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A-~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ayA 127 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--A-DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALA 127 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--C-SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--C-CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHHH
Confidence 345666676777666766666655522 2 4566677777777777777777776654444322222 2235666677
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHH
Q 038364 408 KVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNK 487 (1076)
Q Consensus 408 ~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~ 487 (1076)
+.+++.+-.++.. .||+.-...+-+-+...|.++.|+-+|..+.. |.-|-+.+.+.|++..|.+.-++
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTT
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666554333221 24444344555566666666666666665542 22222333444444444332211
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCC-Cc
Q 038364 488 MNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLD-YD 566 (1076)
Q Consensus 488 M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~-~d 566 (1076)
. -++.||..+-.+|...+.+.-|.-.--.+.-. || .+..++.-|-+.|.+++-..+++..+ |++ ..
T Consensus 196 A------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEagl--glErAH 262 (624)
T 3lvg_A 196 A------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAAL--GLERAH 262 (624)
T ss_dssp C------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCC
T ss_pred c------CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchh
Confidence 1 15567777777777777666554443333311 11 12233344455565555555554443 222 34
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHhh----cCCC-------CHhHHHHHHHHHHhcCChHHHHH
Q 038364 567 LYVGTSLMDMYVKNDCLQNAQEVFDN----MKNR-------NIVAWNSLISGYCFKGLFVNAKK 619 (1076)
Q Consensus 567 ~~v~~aLi~~y~k~g~~~~A~~lf~~----m~~~-------d~~~~n~lI~~~~~~g~~~~A~~ 619 (1076)
..+++-|.-.|+|- +.++-++-++. +.-| ....|.-++-.|++..+++.|..
T Consensus 263 mGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 263 MGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 56677777778775 23333333322 2212 34567777777887777776654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.84 E-value=0.18 Score=45.13 Aligned_cols=74 Identities=11% Similarity=0.069 Sum_probs=56.6
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTMP---------FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYN 910 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m~---------~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~ 910 (1076)
...+..|...+.+.|+++.|..+++..- -.+...++..|..++.+.|+++.|...++++++++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3445567777778888888877776641 1234668899999999999999999999999999999976654
Q ss_pred HHH
Q 038364 911 LMM 913 (1076)
Q Consensus 911 ~L~ 913 (1076)
.+.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.13 Score=54.80 Aligned_cols=82 Identities=13% Similarity=0.166 Sum_probs=65.2
Q ss_pred HHHHHHHHhC-CCCCC---HHHHHHHHHHHHH-----cCCchHHHHHHHHHhcCCCCC-chhHHHHHHHHHHc-CChHHH
Q 038364 857 DEAWDFIRTM-PFKPD---ATIWGALLGSCRI-----HGHLEYAEIASRRLFKLEPCN-SANYNLMMNLLAMS-NRWEDV 925 (1076)
Q Consensus 857 ~eA~~l~~~m-~~~pd---~~~~~~Ll~a~~~-----~g~~e~A~~~~~~l~~l~P~~-~~~y~~L~~~y~~~-G~~~eA 925 (1076)
.+|...+++. .+.|+ ...|..|...|.. -|+.++|++.|++++++.|+. ..+++.+++.|++. |+.++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4455555443 34565 5578888888877 499999999999999999975 99999999999985 999999
Q ss_pred HHHHHHHHhCCCc
Q 038364 926 ERLRHSMDEVGVK 938 (1076)
Q Consensus 926 ~~~~~~m~~~g~~ 938 (1076)
.+.+++.......
T Consensus 260 ~~~L~kAL~a~p~ 272 (301)
T 3u64_A 260 DEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHCCGG
T ss_pred HHHHHHHHcCCCC
Confidence 9999998776543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.32 E-value=0.2 Score=48.17 Aligned_cols=35 Identities=23% Similarity=-0.001 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCch
Q 038364 873 TIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSA 907 (1076)
Q Consensus 873 ~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~ 907 (1076)
..+-.|.-+|.+.|++++|++.++.+++++|+|..
T Consensus 72 d~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 72 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 35566777889999999999999999999998743
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.09 E-value=3.7 Score=40.34 Aligned_cols=104 Identities=19% Similarity=0.153 Sum_probs=68.4
Q ss_pred HHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038364 746 DMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWK 825 (1076)
Q Consensus 746 ~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~ 825 (1076)
+.-..+|+++.|.++-+.+ .+...|..+......+|+.+-|.+.|.+... |..++--|...|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445678888888887766 4567888888888888888888888887654 2333334555677666555
Q ss_pred HHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCC
Q 038364 826 YFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMP 867 (1076)
Q Consensus 826 ~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~ 867 (1076)
+-+....+ .-++.-...+.-.|+++++.+++.+.+
T Consensus 82 la~iA~~~-------g~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTR-------EDFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHT-------TCHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHC-------ccHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 44333322 134444555666777777777777664
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=92.52 E-value=0.48 Score=41.40 Aligned_cols=77 Identities=10% Similarity=-0.007 Sum_probs=56.9
Q ss_pred CCcccHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHH
Q 038364 838 PTIEHYSCMVDLLGKAGY---LDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLM 912 (1076)
Q Consensus 838 p~~~~y~~li~~l~r~G~---l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L 912 (1076)
+++..+..+..++...+. .++|..++++. ...| +...+..+...+...|++++|+..++++++.+|. ...+..+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~i 82 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVTI 82 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHH
Confidence 456677777777765554 68888888886 3445 4557777788899999999999999999999998 4444444
Q ss_pred HHH
Q 038364 913 MNL 915 (1076)
Q Consensus 913 ~~~ 915 (1076)
...
T Consensus 83 ~~~ 85 (93)
T 3bee_A 83 IES 85 (93)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.16 E-value=8.1 Score=37.86 Aligned_cols=47 Identities=19% Similarity=0.276 Sum_probs=31.6
Q ss_pred hhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHh
Q 038364 643 YSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQ 695 (1076)
Q Consensus 643 y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~ 695 (1076)
...+|+++.|.++-+.+ .+...|..|.+...+.|+++-|.+.|.+..
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 34567777777776655 255667777777777777777777777664
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.38 E-value=51 Score=41.03 Aligned_cols=23 Identities=4% Similarity=-0.025 Sum_probs=11.1
Q ss_pred HHHHHHHccCCcHHHHHHHHHHH
Q 038364 401 KMLQACAKVGAFHEGKQIHGYVL 423 (1076)
Q Consensus 401 ~ll~a~~~~g~~~~a~~i~~~~~ 423 (1076)
.+++...+.++.+.+.+++..++
T Consensus 235 ~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 235 TLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444555555555555444
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=88.24 E-value=13 Score=34.60 Aligned_cols=86 Identities=5% Similarity=-0.094 Sum_probs=64.8
Q ss_pred hhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHH
Q 038364 644 SIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGK 723 (1076)
Q Consensus 644 ~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~ 723 (1076)
..||++......+-.+ ..+......-++.+...|+-++-.+++.++.. ..+|+......+..||.+.|+..++.
T Consensus 72 s~C~NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~ 145 (172)
T 1wy6_A 72 DKCQNLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDAT 145 (172)
T ss_dssp GGCSCTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhhcHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHH
Confidence 4567777766666665 23566777778888888888888888888644 35677888888888888888888888
Q ss_pred HHHHHHHHcCCC
Q 038364 724 EIHCLCLKNGFI 735 (1076)
Q Consensus 724 ~i~~~~~~~g~~ 735 (1076)
+++.++-+.|+.
T Consensus 146 eLl~~AC~kG~k 157 (172)
T 1wy6_A 146 TLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHTTCH
T ss_pred HHHHHHHHhhhH
Confidence 888888887754
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=87.61 E-value=1.7 Score=38.56 Aligned_cols=65 Identities=8% Similarity=-0.067 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCC-------CCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 871 DATIWGALLGSCRIHGHLEYAEIASRRLFKLE-------PCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 871 d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~-------P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
+..-...|...+...|+++.|...++++++.. +..+..|..|+.+|.+.|++++|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34456678888999999999999999998752 234567999999999999999999999998543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=87.15 E-value=2.1 Score=39.55 Aligned_cols=86 Identities=16% Similarity=-0.043 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHH---HHHHHHhCC-CC-C--CHHHHHHHHHHHHHcCCchH
Q 038364 818 GLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDE---AWDFIRTMP-FK-P--DATIWGALLGSCRIHGHLEY 890 (1076)
Q Consensus 818 g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~e---A~~l~~~m~-~~-p--d~~~~~~Ll~a~~~~g~~e~ 890 (1076)
..+...++-|...... |. |+..+--.+..++.++...++ +..++++.- .. | .....-.|.-++.+.|+++.
T Consensus 15 ~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3344444444444332 22 455555555566666665544 555555542 11 2 11123334445666666666
Q ss_pred HHHHHHHHhcCCCCC
Q 038364 891 AEIASRRLFKLEPCN 905 (1076)
Q Consensus 891 A~~~~~~l~~l~P~~ 905 (1076)
|++.++.+++++|+|
T Consensus 93 A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCC
Confidence 666666666666655
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.06 E-value=41 Score=36.51 Aligned_cols=168 Identities=11% Similarity=0.015 Sum_probs=100.6
Q ss_pred HHHHHHHHHhcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHH----HHHHHCCCCCCHHHHHHHHHHH
Q 038364 331 LKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLF----REMQFSSAKAISRTIVKMLQAC 406 (1076)
Q Consensus 331 ~~~~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf----~~M~~~g~~p~~~t~~~ll~a~ 406 (1076)
.+-++.+-|.+.+++++|..+.-.- ...+.++|....|-++- +-..+.++++|..+...++..+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3456667788899999998875331 12355667766665554 4444667888888877777777
Q ss_pred HccCCcH-----HHHHHHHHHHHhC--CCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChH
Q 038364 407 AKVGAFH-----EGKQIHGYVLKSA--LESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVD 479 (1076)
Q Consensus 407 ~~~g~~~-----~a~~i~~~~~~~g--~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~ 479 (1076)
.....-+ ...+...+-.+.| ..-|+.....+-..|.+.+++.+|+.-|-.-.++.+..+..|+.-+.+.+...
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc
Confidence 6554321 1222333334444 34577888889999999999999998885322223356655555554444333
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 038364 480 VAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQS 525 (1076)
Q Consensus 480 ~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~ 525 (1076)
++--++-+ .+--|.-.++...|..+++...+
T Consensus 185 e~dlfiaR---------------aVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 TAPLYCAR---------------AVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GHHHHHHH---------------HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHH---------------HHHHHHHhCCHHHHHHHHHHHHH
Confidence 32222221 12235556677777776665543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.64 E-value=1.3 Score=53.93 Aligned_cols=52 Identities=15% Similarity=-0.010 Sum_probs=49.5
Q ss_pred HHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 881 SCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 881 a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
-|...|+++.|+.+++++...-|.+..++..|+.+|...|+|+.|+-.+..+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3678899999999999999999999999999999999999999999999988
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=85.37 E-value=44 Score=35.96 Aligned_cols=83 Identities=7% Similarity=0.048 Sum_probs=52.4
Q ss_pred CChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038364 736 KDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIY---GNGKEAILLFHELLETGFQPDAITFTALLA 812 (1076)
Q Consensus 736 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~---g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~ 812 (1076)
-|+.....+...|.+.|++.+|+.-|-.....|...+..|+.-+.+. |...++--..- .++|
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~--------------RaVL- 196 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFS--------------RLVF- 196 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH--------------HHHH-
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHH--------------HHHH-
Confidence 47788889999999999999999988633323455555554444333 44433221111 1222
Q ss_pred HHHhcCCHHHHHHHHHHhhhc
Q 038364 813 ACKNSGLVEEGWKYFDSMSTD 833 (1076)
Q Consensus 813 a~~~~g~~~eA~~~~~~m~~~ 833 (1076)
-|...|++..|..+|+...+.
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 245678999999998877543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=84.31 E-value=3.8 Score=37.78 Aligned_cols=86 Identities=8% Similarity=-0.013 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhhhcCCCCC--CcccHHHHHHHHHhcCCHH
Q 038364 783 GNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEE---GWKYFDSMSTDYNIIP--TIEHYSCMVDLLGKAGYLD 857 (1076)
Q Consensus 783 g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~e---A~~~~~~m~~~~g~~p--~~~~y~~li~~l~r~G~l~ 857 (1076)
.....+.+-|.+....|. |+..|-..+..++.++...++ |+.+++.+.+. -.| ..+..-.|.-++.|.|+++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhhHH
Confidence 334445555555555443 666665566677777776555 77777777653 113 2334445666778888888
Q ss_pred HHHHHHHhC-CCCCC
Q 038364 858 EAWDFIRTM-PFKPD 871 (1076)
Q Consensus 858 eA~~l~~~m-~~~pd 871 (1076)
+|.+.++.+ ..+|+
T Consensus 92 ~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCC
Confidence 888888776 34554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=83.69 E-value=17 Score=34.12 Aligned_cols=65 Identities=5% Similarity=-0.140 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHHcC---CchHHHHHHHHHhcCCCCC-chhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 870 PDATIWGALLGSCRIHG---HLEYAEIASRRLFKLEPCN-SANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 870 pd~~~~~~Ll~a~~~~g---~~e~A~~~~~~l~~l~P~~-~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
|+..+--.+..++.+.. +..+|+.+++.++..+|.+ -+....|+-.+.+.|++++|.+..+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44444444444444433 2345666666666555532 24455566666666666666666666643
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=83.63 E-value=4.2 Score=43.34 Aligned_cols=126 Identities=13% Similarity=0.057 Sum_probs=85.0
Q ss_pred CCCHHHHHHHHhhcCCCCH--hHHHHHHH-HHHhc--CC------hHHHHHHHHHHHHcCCCCC---ccchhhhhhhhhh
Q 038364 580 NDCLQNAQEVFDNMKNRNI--VAWNSLIS-GYCFK--GL------FVNAKKMLNQMEEEEIKPD---LVSWNSLVSGYSI 645 (1076)
Q Consensus 580 ~g~~~~A~~lf~~m~~~d~--~~~n~lI~-~~~~~--g~------~~~A~~lf~~M~~~g~~pd---~~t~~~Li~~y~k 645 (1076)
.++..+-...+.+....|+ ..|..++. +++.. |. ..+|..++++..+. .|+ ...|..|...|.+
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHh
Confidence 3444444555555554444 45776665 34442 32 45666666666655 455 4577888888888
Q ss_pred -----cCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcC-CChhHHHHHHHHHhhcCCC--CChhhHH
Q 038364 646 -----WGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQN-ENYRESLKFFIQMQQEDIK--PNSTTMS 707 (1076)
Q Consensus 646 -----~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~-g~~~eAl~l~~~m~~~gi~--pd~~t~~ 707 (1076)
-|+.++|.+.|++..+.+..-+..++....+.+++. |+.++|.+.+++.+..... |+....+
T Consensus 212 vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 489999999999988853323478888888888884 8899999999999887666 6544333
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=81.51 E-value=64 Score=34.97 Aligned_cols=83 Identities=10% Similarity=0.001 Sum_probs=50.5
Q ss_pred CCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhh
Q 038364 564 DYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGY 643 (1076)
Q Consensus 564 ~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y 643 (1076)
.-|+.....+...|.+.+++.+|+.-|-.-.+++...+..|+.-+.+.+...++--.+-+ .+-.|
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaR---------------aVL~y 197 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCAR---------------AVLPY 197 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHH---------------HHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHH---------------HHHHH
Confidence 346777788889999999999999988532222335665555554444433222211111 12245
Q ss_pred hhcCChhHHHHHHHHhHh
Q 038364 644 SIWGQSKEALVIIHHMKN 661 (1076)
Q Consensus 644 ~k~g~~~~A~~lf~~m~~ 661 (1076)
.-.+++..|..+|+...+
T Consensus 198 L~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 198 LLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 556788888887776654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=81.12 E-value=64 Score=34.68 Aligned_cols=82 Identities=11% Similarity=0.102 Sum_probs=53.7
Q ss_pred CchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCCccchhhhhh
Q 038364 565 YDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFK---GLFVNAKKMLNQMEEEEIKPDLVSWNSLVS 641 (1076)
Q Consensus 565 ~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~---g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~ 641 (1076)
-|+.....+...|.+.|++.+|+.-|-.-...|...+..|+.-+.+. |...++--..-+. +-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~Ra---------------VL 196 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRL---------------VF 196 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH---------------HH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHH---------------HH
Confidence 36777888899999999999999988733323566666666655554 5554432222221 22
Q ss_pred hhhhcCChhHHHHHHHHhHh
Q 038364 642 GYSIWGQSKEALVIIHHMKN 661 (1076)
Q Consensus 642 ~y~k~g~~~~A~~lf~~m~~ 661 (1076)
.|.-.|++..|..+|+...+
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 34456788888888887653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1076 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.83 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.81 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.34 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.23 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.78 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.72 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.64 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.63 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.54 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.53 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.51 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.47 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.44 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.34 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.22 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.1 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.05 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.04 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.04 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.0 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.99 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.93 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.79 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.77 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.77 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 97.76 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.75 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.71 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.66 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.62 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.5 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.49 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.48 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.48 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.43 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.39 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.38 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.34 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.33 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.23 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.18 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.08 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.74 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 96.67 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.64 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.63 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 96.52 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.44 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 95.98 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 95.83 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 95.8 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 95.8 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.77 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 95.61 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.1 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 85.55 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 84.77 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 84.33 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 83.43 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 82.84 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 80.37 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=8.5e-18 Score=189.17 Aligned_cols=346 Identities=13% Similarity=0.070 Sum_probs=247.7
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhh
Q 038364 567 LYVGTSLMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGY 643 (1076)
Q Consensus 567 ~~v~~aLi~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y 643 (1076)
..++..+...|.+.|++++|...|++..+ .+..+|..+...|.+.|++++|++.+....+... .+...........
T Consensus 33 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~ 111 (388)
T d1w3ba_ 33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP-DFIDGYINLAAAL 111 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccccccccccc-ccccccccccccc
Confidence 33445555556666666666666665432 3445666666667777777777777776665432 1222233333333
Q ss_pred hhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCC-ChhhHHHHHHHHhcCCCchhH
Q 038364 644 SIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKP-NSTTMSSLLQTCGGLGLLQNG 722 (1076)
Q Consensus 644 ~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~p-d~~t~~~lL~a~~~~g~~~~a 722 (1076)
...+....+........... ......+..........+....+...+.+.... .| +...+..+...+...++.+.|
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 188 (388)
T d1w3ba_ 112 VAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLA 188 (388)
T ss_dssp HHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred cccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhcc--CcchhHHHHhhcccccccCcHHHH
Confidence 44444444444444433321 233444445555566667777777776666543 23 345566666677777888888
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 038364 723 KEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSA---NKTLASWNCMIMGFAIYGNGKEAILLFHELLETG 799 (1076)
Q Consensus 723 ~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g 799 (1076)
...+...++.. +.+...+..+...|...|++++|.+.+++.. ..+...|..+...+.+.|++++|+..|++..+
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-- 265 (388)
T d1w3ba_ 189 IHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE-- 265 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 88887777642 2345677888889999999999999888765 34566788889999999999999999999988
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHH
Q 038364 800 FQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD-ATIWG 876 (1076)
Q Consensus 800 ~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd-~~~~~ 876 (1076)
+.|+. .++..+...+...|++++|.+.++..... .+.+...+..+...+.+.|++++|.+.+++. ...|+ ..+|.
T Consensus 266 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 343 (388)
T d1w3ba_ 266 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343 (388)
T ss_dssp TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 45654 57888888899999999999999988764 3445678888999999999999999999985 45564 66889
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCC
Q 038364 877 ALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNR 921 (1076)
Q Consensus 877 ~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~ 921 (1076)
.+..++...|++++|+..++++++++|+++.+|..|+++|.+.|+
T Consensus 344 ~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 344 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999988874
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=5.4e-17 Score=182.49 Aligned_cols=354 Identities=14% Similarity=0.074 Sum_probs=285.0
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCCh
Q 038364 573 LMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQS 649 (1076)
Q Consensus 573 Li~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~ 649 (1076)
+...+.+.|++++|.+.|+++.+ .+...|..+...|.+.|++++|+..|++..+.. +-+..+|..+...|.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence 34567788999999999988754 367889999999999999999999999998764 22456788899999999999
Q ss_pred hHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHH
Q 038364 650 KEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLC 729 (1076)
Q Consensus 650 ~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~ 729 (1076)
++|.+.+....+... .+...+..........+....+........... ..+..............+....+.......
T Consensus 84 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccccccccccccccc-ccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence 999999999887532 234445555555566666666666666655433 233344444555556667777777777666
Q ss_pred HHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 038364 730 LKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSA---NKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAIT 806 (1076)
Q Consensus 730 ~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t 806 (1076)
... ...+...+..+...+...|++++|...+++.. ..+...|..+...+...|++++|+..|++..... ..+...
T Consensus 162 ~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 239 (388)
T d1w3ba_ 162 IET-QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred hcc-CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence 654 23356777888999999999999999998765 3456789999999999999999999999998853 344566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 038364 807 FTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM--PFKPDATIWGALLGSCR 883 (1076)
Q Consensus 807 ~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m--~~~pd~~~~~~Ll~a~~ 883 (1076)
+..+...+...|++++|.+.|++..+. .|+ ...+..+...|.+.|+.++|.+.++.. ..+.+...+..+...+.
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH
Confidence 777888899999999999999998753 454 668889999999999999999999886 24567788999999999
Q ss_pred HcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 884 IHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 884 ~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
..|++++|+..++++++++|+++.++..++.+|.+.|++++|.+.+++..+
T Consensus 317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999854
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=4.1e-11 Score=131.29 Aligned_cols=195 Identities=14% Similarity=0.066 Sum_probs=134.2
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----------
Q 038364 739 YVATGLIDMYSKSGNLKSAREVFRKSA---NKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAI---------- 805 (1076)
Q Consensus 739 ~~~~~Li~~y~k~G~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~---------- 805 (1076)
..+..+...|...|++++|...|++.. ..+...|..+...|...|+.++|++.+++... ..|+..
T Consensus 54 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~ 131 (323)
T d1fcha_ 54 EAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR--YTPAYAHLVTPAEEGA 131 (323)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSTTTGGGCC------
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHH--hccchHHHHHhhhhhh
Confidence 344444445555555555555554332 12334455555555555555555555555544 222210
Q ss_pred ------HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 038364 806 ------TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGA 877 (1076)
Q Consensus 806 ------t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~ 877 (1076)
.....+..+...+..+++.+.|.+..+...-.++...+..+...+.+.|++++|.+.+++. ...| +..+|..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 211 (323)
T d1fcha_ 132 GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNK 211 (323)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhh
Confidence 0111122234456677888888877654333445667888999999999999999999886 3334 5778999
Q ss_pred HHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 878 LLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 878 Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
+...+...|++++|+..++++++++|+++.+|..|+.+|.+.|++++|.+.+++..+.
T Consensus 212 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 212 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999998654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=2.7e-10 Score=124.58 Aligned_cols=266 Identities=14% Similarity=0.032 Sum_probs=173.9
Q ss_pred hhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCC-ChhhHHHHHHHHhcCC
Q 038364 639 LVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKP-NSTTMSSLLQTCGGLG 717 (1076)
Q Consensus 639 Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~p-d~~t~~~lL~a~~~~g 717 (1076)
....+.+.|++++|...|++..+.. +.+...|..+...|...|++++|+..|.+..+. .| +...+..+...+...|
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--ccccccccccccccccccc
Confidence 3445667778888888887777642 124567777777777777777777777776653 33 3345555555666666
Q ss_pred CchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038364 718 LLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLE 797 (1076)
Q Consensus 718 ~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~ 797 (1076)
++++|.+.+..+.+. .|+............ ...+.......+..+...+...+|.+.|++..+
T Consensus 102 ~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 164 (323)
T d1fcha_ 102 LQRQACEILRDWLRY--TPAYAHLVTPAEEGA---------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 164 (323)
T ss_dssp CHHHHHHHHHHHHHT--STTTGGGCC------------------------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHh--ccchHHHHHhhhhhh---------------hhcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 666666666665552 222111000000000 000011111122334455667888888888776
Q ss_pred CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHH
Q 038364 798 TG-FQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DAT 873 (1076)
Q Consensus 798 ~g-~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~ 873 (1076)
.. -.++...+..+...+...|++++|...|++.... .|+ ...|..+...|.+.|++++|.+.+++. ...| +..
T Consensus 165 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 165 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HhhcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 32 2334567777778889999999999999998754 344 667888999999999999999999886 3444 466
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchh-----------HHHHHHHHHHcCChHHHHH
Q 038364 874 IWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSAN-----------YNLMMNLLAMSNRWEDVER 927 (1076)
Q Consensus 874 ~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~-----------y~~L~~~y~~~G~~~eA~~ 927 (1076)
+|..+..+|...|++++|+..++++++++|++... +..+...+...|+++.+..
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 89999999999999999999999999998887543 4556777777777765543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.78 E-value=3e-07 Score=99.88 Aligned_cols=194 Identities=15% Similarity=0.046 Sum_probs=132.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcCC-------CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHH
Q 038364 741 ATGLIDMYSKSGNLKSAREVFRKSAN-------KT----LASWNCMIMGFAIYGNGKEAILLFHELLETGF----QPDAI 805 (1076)
Q Consensus 741 ~~~Li~~y~k~G~~~~A~~vf~~m~~-------~d----~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~----~Pd~~ 805 (1076)
+..+...|...|++..|...+..... +. ...+..+...+...|+.+++...+++.....- .....
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 34455666777777777766654321 11 12445566777788888888888877765321 22233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-----cccHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-----CHHH
Q 038364 806 TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-----IEHYSCMVDLLGKAGYLDEAWDFIRTMP-FKP-----DATI 874 (1076)
Q Consensus 806 t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-----~~~y~~li~~l~r~G~l~eA~~l~~~m~-~~p-----d~~~ 874 (1076)
++......+...+..+++...+........-... ...+..+...+...|+.++|.+.+++.. ..| ....
T Consensus 174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T d1hz4a_ 174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence 4455555677778888888777665443221111 2245566777888999999999988862 211 2346
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHhc------CCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 875 WGALLGSCRIHGHLEYAEIASRRLFK------LEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 875 ~~~Ll~a~~~~g~~e~A~~~~~~l~~------l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
+..+..++...|++++|...+++++. ..|.....+..++.+|.+.|++++|.+.+++..+
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67778889999999999999998873 4455667899999999999999999999988744
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.72 E-value=7.1e-07 Score=96.76 Aligned_cols=291 Identities=11% Similarity=0.004 Sum_probs=167.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCc------cchhhhhhhhhhcCChhHHHHHHHHhHhc----CCCC-chHHHHH
Q 038364 605 ISGYCFKGLFVNAKKMLNQMEEEEIKPDL------VSWNSLVSGYSIWGQSKEALVIIHHMKNS----GIYP-NVVTWTS 673 (1076)
Q Consensus 605 I~~~~~~g~~~~A~~lf~~M~~~g~~pd~------~t~~~Li~~y~k~g~~~~A~~lf~~m~~~----gi~p-d~~ty~~ 673 (1076)
...+...|++++|++++++..+. .|+. ..++.+...|...|++++|...|++..+. +..+ ....+..
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~--~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEE--LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHT--CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh--CcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 34456778888888888777654 2332 23455566667777777777777766541 1000 1223344
Q ss_pred HHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCC---ChhhHHHHHHHHhh
Q 038364 674 LISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIK---DAYVATGLIDMYSK 750 (1076)
Q Consensus 674 LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~---d~~~~~~Li~~y~k 750 (1076)
+...+...|++.+|...+.+.... ..+.+... ....+..+...|..
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~-------------------------------~~~~~~~~~~~~~~~~~~la~~~~~ 145 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQL-------------------------------INEQHLEQLPMHEFLVRIRAQLLWA 145 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-------------------------------HHHTTCTTSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------------------------hHhcccchhhHHHHHHHHHHHHHHH
Confidence 445555556666665555554321 00111111 11234445666667
Q ss_pred cCCHHHHHHHHHhcCC----C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH--HHHHHHHHHHHh
Q 038364 751 SGNLKSAREVFRKSAN----K----TLASWNCMIMGFAIYGNGKEAILLFHELLET----GFQPDA--ITFTALLAACKN 816 (1076)
Q Consensus 751 ~G~~~~A~~vf~~m~~----~----d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~----g~~Pd~--~t~~~ll~a~~~ 816 (1076)
.|+++.|...++.... . ....+..+...+...++..++...+.+.... +..+.. ..+..+...+..
T Consensus 146 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (366)
T d1hz4a_ 146 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM 225 (366)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred hcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHh
Confidence 7777777766654431 1 1234455556667777777777776665431 111111 133444445777
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCC--cccHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHHcC
Q 038364 817 SGLVEEGWKYFDSMSTDYNIIPT--IEHYSCMVDLLGKAGYLDEAWDFIRTM-------PFKPDA-TIWGALLGSCRIHG 886 (1076)
Q Consensus 817 ~g~~~eA~~~~~~m~~~~g~~p~--~~~y~~li~~l~r~G~l~eA~~l~~~m-------~~~pd~-~~~~~Ll~a~~~~g 886 (1076)
.|+.++|...+........-.+. ...+..+...|...|++++|.+.+++. +..|+. .+|..+...+...|
T Consensus 226 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 305 (366)
T d1hz4a_ 226 TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 305 (366)
T ss_dssp TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCC
Confidence 88888888888776543111111 223455677888888888888887764 333433 36777778888999
Q ss_pred CchHHHHHHHHHhcCCCCC---------chhHHHHHHHHHHcCChHHHHHH
Q 038364 887 HLEYAEIASRRLFKLEPCN---------SANYNLMMNLLAMSNRWEDVERL 928 (1076)
Q Consensus 887 ~~e~A~~~~~~l~~l~P~~---------~~~y~~L~~~y~~~G~~~eA~~~ 928 (1076)
++++|+..+++++++.+.. ...+..+...+...++.+|+.+-
T Consensus 306 ~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 306 RKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 9999999999888764321 22344455566777888887654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.64 E-value=6e-07 Score=97.02 Aligned_cols=184 Identities=11% Similarity=0.052 Sum_probs=129.4
Q ss_pred chhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CC-hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038364 719 LQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KT-LASWNCMIMGFAIYGNGKEAILLFHE 794 (1076)
Q Consensus 719 ~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d-~~s~n~li~~~~~~g~~~~Al~l~~~ 794 (1076)
.+++..+++..++.....+...+...+..+.+.|+++.|..+|+++.. .+ ...|...+....+.|+.++|.++|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 456677777777654444566777788888888888888888887653 23 24688888888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC----CCC
Q 038364 795 LLETGFQPDAITFTALLA-ACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM----PFK 869 (1076)
Q Consensus 795 M~~~g~~Pd~~t~~~ll~-a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m----~~~ 869 (1076)
+.+.+.. +...|..... -+...|+.+.|.++|+.+.+. ...+...|...++.+.+.|+++.|..+|++. +..
T Consensus 160 al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 160 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 8874322 2223322222 234467888888888888764 2334567788888888888888888888874 233
Q ss_pred CC--HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC
Q 038364 870 PD--ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 870 pd--~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
|+ ...|...+.--..+|+.+.+..+.+++.++.|++
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 32 4578888887788888888888888887777765
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.63 E-value=7.4e-09 Score=113.83 Aligned_cols=227 Identities=7% Similarity=-0.082 Sum_probs=151.8
Q ss_pred CChhHHHHHHHHHhhcCCCC-ChhhHHHHHHHHhcCC--CchhHHHHHHHHHHcCCCCChhhH-HHHHHHHhhcCCHHHH
Q 038364 682 ENYRESLKFFIQMQQEDIKP-NSTTMSSLLQTCGGLG--LLQNGKEIHCLCLKNGFIKDAYVA-TGLIDMYSKSGNLKSA 757 (1076)
Q Consensus 682 g~~~eAl~l~~~m~~~gi~p-d~~t~~~lL~a~~~~g--~~~~a~~i~~~~~~~g~~~d~~~~-~~Li~~y~k~G~~~~A 757 (1076)
|++++|+.++++..+. .| +...|..+..++...+ +.+++...+..+++... .+...+ ..+...+...|..++|
T Consensus 87 ~~~~~al~~~~~~l~~--~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 87 ALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHh--CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHH
Confidence 3445555555555442 23 2333333333333333 34556666666655311 223333 3345677778889999
Q ss_pred HHHHHhcCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 038364 758 REVFRKSANK---TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDY 834 (1076)
Q Consensus 758 ~~vf~~m~~~---d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~ 834 (1076)
...++...+. +..+|+.+...+...|+.++|...+++..+ +.|+... +...+...+..+++...+......
T Consensus 164 l~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~---~~~~~~~l~~~~~a~~~~~~~l~~- 237 (334)
T d1dcea1 164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKELE---LVQNAFFTDPNDQSAWFYHRWLLG- 237 (334)
T ss_dssp HHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHHHH---HHHHHHHHCSSCSHHHHHHHHHHS-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHHHH---HHHHHHHhcchhHHHHHHHHHHHh-
Confidence 9988877753 557888888888888888887666555444 2233222 233345566777788777776543
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHH
Q 038364 835 NIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLM 912 (1076)
Q Consensus 835 g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L 912 (1076)
-.++...+..++..+...|+.++|.+.+.+. ...|+ ..+|..+..++...|+.++|...++++++++|.+..+|..|
T Consensus 238 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L 316 (334)
T d1dcea1 238 -RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 316 (334)
T ss_dssp -CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred -CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 2344556667788888999999999998876 45554 45788888999999999999999999999999998899988
Q ss_pred HHHHHH
Q 038364 913 MNLLAM 918 (1076)
Q Consensus 913 ~~~y~~ 918 (1076)
...+.-
T Consensus 317 ~~~~~~ 322 (334)
T d1dcea1 317 RSKFLL 322 (334)
T ss_dssp HHHHHH
T ss_pred HHHHhH
Confidence 887764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.54 E-value=1.4e-06 Score=94.10 Aligned_cols=182 Identities=9% Similarity=0.026 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHH
Q 038364 614 FVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQ 693 (1076)
Q Consensus 614 ~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~ 693 (1076)
.++|..+|++..+...+.+...|...+..+.+.|+.+.|..+|+++.+.........|...+..+.+.|+.++|.++|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34555555555543222233344455555555666666666666655432222233455666666666666666666666
Q ss_pred HhhcCCCCChhhHHHHHH-HHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCC-----
Q 038364 694 MQQEDIKPNSTTMSSLLQ-TCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANK----- 767 (1076)
Q Consensus 694 m~~~gi~pd~~t~~~lL~-a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~----- 767 (1076)
+.+.+.. +...|..... -....++.+.|..+++.+++. ...+...+...++++.+.|+.+.|+.+|++....
T Consensus 160 al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 160 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 5543211 1122222111 122335555566666555553 2334455555566666666666666666553211
Q ss_pred --ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038364 768 --TLASWNCMIMGFAIYGNGKEAILLFHELLE 797 (1076)
Q Consensus 768 --d~~s~n~li~~~~~~g~~~~Al~l~~~M~~ 797 (1076)
....|...+.--..+|+.+.+.++++++.+
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 123455555555555555555555555544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=4e-07 Score=98.78 Aligned_cols=183 Identities=10% Similarity=0.133 Sum_probs=81.2
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC
Q 038364 744 LIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYG-NGKEAILLFHELLETGFQPDA-ITFTALLAACKNSG 818 (1076)
Q Consensus 744 Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g-~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g 818 (1076)
+...|.+.+..++|.+.++++.+ .+...|+.....+...| +.++|+..+++..+ +.|+. .+|..+...+...|
T Consensus 49 ~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~--~~p~~~~a~~~~~~~~~~l~ 126 (315)
T d2h6fa1 49 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHHRRVLVEWLR 126 (315)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HHHhhhhHHHHHhHHHHhhc
Confidence 33344444444444444444332 22334444444444433 24555555554444 23332 24444444444455
Q ss_pred CHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC------ch
Q 038364 819 LVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGH------LE 889 (1076)
Q Consensus 819 ~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~------~e 889 (1076)
++++|.+.++.+.+. .|+ ...|..+..++.+.|++++|++.++++ ...| +...|+.+...+...+. ++
T Consensus 127 ~~~eAl~~~~kal~~---dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~ 203 (315)
T d2h6fa1 127 DPSQELEFIADILNQ---DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLE 203 (315)
T ss_dssp CCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHH
T ss_pred cHHHHHHHHhhhhhh---hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhH
Confidence 555555555544432 222 334444445555555555555555444 1222 33344444443333332 24
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 890 YAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 890 ~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
+|+..++++++++|++...+..++.++...| .+++.+.+++.
T Consensus 204 ~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~ 245 (315)
T d2h6fa1 204 REVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQL 245 (315)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHH
T ss_pred HhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHH
Confidence 4555555555555555555555555443332 34444444444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.51 E-value=5.2e-07 Score=94.20 Aligned_cols=196 Identities=12% Similarity=-0.070 Sum_probs=111.1
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCC
Q 038364 708 SLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGN 784 (1076)
Q Consensus 708 ~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~ 784 (1076)
.+-.++...|++++|...+..+++. -+.++.++..+..+|.+.|++++|.+.|++..+ .+..+|..+...|...|+
T Consensus 42 ~~G~~y~~~g~~~~A~~~~~~al~l-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~ 120 (259)
T d1xnfa_ 42 ERGVLYDSLGLRALARNDFSQALAI-RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR 120 (259)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHhhcc-CCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhh
Confidence 3334444455555555555555442 112455667777778888888888888776653 345677778888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCC----HHHH
Q 038364 785 GKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGY----LDEA 859 (1076)
Q Consensus 785 ~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~----l~eA 859 (1076)
+++|++.|++..+. .|+. .....+..++...+..+....+...... ..+....++ ++..+..... .+.+
T Consensus 121 ~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 194 (259)
T d1xnfa_ 121 DKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWN-IVEFYLGNISEQTLMERL 194 (259)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHH-HHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhh-HHHHHHHHHHHHHHHHHH
Confidence 88888888888773 4433 3333333334444544444444444432 122222222 2222222112 2222
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHH
Q 038364 860 WDFIRTM-PFKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYN 910 (1076)
Q Consensus 860 ~~l~~~m-~~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~ 910 (1076)
...+... ...|+ ..+|..+...+...|++++|...++++++.+|++...|.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 195 KADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 2211111 11222 236777888899999999999999999999998755443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.47 E-value=2.9e-07 Score=96.22 Aligned_cols=192 Identities=12% Similarity=-0.023 Sum_probs=134.8
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 038364 739 YVATGLIDMYSKSGNLKSAREVFRKSA---NKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAAC 814 (1076)
Q Consensus 739 ~~~~~Li~~y~k~G~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~ 814 (1076)
.++..+...|.+.|++++|.+.|++.. ..++.+|+.+..+|.+.|++++|++.|++..+ +.|+. .++..+..++
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHH--HHhhhhhhHHHHHHHH
Confidence 456678899999999999999999765 35778999999999999999999999999998 56654 4677888889
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHH----HcCCc
Q 038364 815 KNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTMP-FKPDATIWGALLGSCR----IHGHL 888 (1076)
Q Consensus 815 ~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m~-~~pd~~~~~~Ll~a~~----~~g~~ 888 (1076)
...|++++|.+.|+...+. .|+ ......+...+.+.+..+.+..+..... ..++...+.. +..+. ..+..
T Consensus 116 ~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTLM 191 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHHH
Confidence 9999999999999998764 343 3333344445556665555544443331 1222222221 11111 11223
Q ss_pred hHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 889 EYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 889 e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
+.+...+.......|+...+|..|+.+|...|++++|.+.+++.....
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 333333333344566667789999999999999999999999986543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=7.3e-06 Score=88.50 Aligned_cols=160 Identities=13% Similarity=0.070 Sum_probs=86.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccC-CcHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 038364 364 WNEIIMVKLRNEKWENAIKLFREMQFSSAKAISR-TIVKMLQACAKVG-AFHEGKQIHGYVLKSALESNLSVCNCLISMY 441 (1076)
Q Consensus 364 ~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~-t~~~ll~a~~~~g-~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y 441 (1076)
|+-+-..+.+.+.+++|++++++..+. .|+.. .|.....++...+ ++++|...+..+++... .+..+|+.+...+
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHHhHHH
Confidence 444444455555666666666655543 33332 3344444444443 35555555555555542 2345555555566
Q ss_pred HhCCChHHHHHHHHhcC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC------
Q 038364 442 SRNNKLELATRVFDSMK---DHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGS------ 512 (1076)
Q Consensus 442 ~k~g~~~~A~~lf~~m~---~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~------ 512 (1076)
.+.|+.++|...|+++. ..+...|+.+...+.+.|++++|++.|+++.+..+. +...|+.+...+.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhhh
Confidence 66666666666665552 234556666666666666666666666666665544 55566655555554443
Q ss_pred hhhHHHHHHHHHhcC
Q 038364 513 YQNVLTLLRGMQSLG 527 (1076)
Q Consensus 513 ~~~Al~l~~~m~~~g 527 (1076)
+++|++.+.+..+..
T Consensus 202 ~~~ai~~~~~al~~~ 216 (315)
T d2h6fa1 202 LEREVQYTLEMIKLV 216 (315)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred hHHhHHHHHHHHHhC
Confidence 345555555555443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.34 E-value=4.7e-07 Score=98.98 Aligned_cols=252 Identities=10% Similarity=-0.054 Sum_probs=168.5
Q ss_pred HHHHHHhcCCChhHHHHHHHHHhhcCCCCChhh-HH---HHHHHHhc-------CCCchhHHHHHHHHHHcCCCCChhhH
Q 038364 673 SLISGSLQNENYRESLKFFIQMQQEDIKPNSTT-MS---SLLQTCGG-------LGLLQNGKEIHCLCLKNGFIKDAYVA 741 (1076)
Q Consensus 673 ~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t-~~---~lL~a~~~-------~g~~~~a~~i~~~~~~~g~~~d~~~~ 741 (1076)
.++....+.+..++|++++++..+ ..|+..+ |+ .++..... .+.++++...++.+++. .+.+...+
T Consensus 34 ~~~~~~~~~~~~~~al~~~~~~l~--~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~-~pk~~~~~ 110 (334)
T d1dcea1 34 AVFQKRQAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-NPKSYGTW 110 (334)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-CTTCHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh-CCCcHHHH
Confidence 333333444445788888888775 4566543 22 22222222 23456677777777764 22345556
Q ss_pred HHHHHHHhhcC--CHHHHHHHHHhcCC---CChHHHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 038364 742 TGLIDMYSKSG--NLKSAREVFRKSAN---KTLASWNC-MIMGFAIYGNGKEAILLFHELLETGFQPD-AITFTALLAAC 814 (1076)
Q Consensus 742 ~~Li~~y~k~G--~~~~A~~vf~~m~~---~d~~s~n~-li~~~~~~g~~~~Al~l~~~M~~~g~~Pd-~~t~~~ll~a~ 814 (1076)
..+...+...+ ++++|...++++.+ ++...|.. ....+...++.++|+..++++.+ ..|+ ...|..+...+
T Consensus 111 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~--~~p~~~~a~~~l~~~~ 188 (334)
T d1dcea1 111 HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLL 188 (334)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHH--cCCCCHHHHHHHHHHH
Confidence 66666665554 48888888887643 45556654 44677778889999998888887 3454 45677777777
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHH
Q 038364 815 KNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM--PFKPDATIWGALLGSCRIHGHLEYAE 892 (1076)
Q Consensus 815 ~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m--~~~pd~~~~~~Ll~a~~~~g~~e~A~ 892 (1076)
...|++++|...+...... .|+ ...+...+...+..++|...+.+. ..+++...+..+...+...|+.++|.
T Consensus 189 ~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~ 262 (334)
T d1dcea1 189 PQLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESC 262 (334)
T ss_dssp HHHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHH
Confidence 7888777765544433221 111 122334455667777777766654 22334446667777888889999999
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 893 IASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 893 ~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
..+.+..+.+|++...+..++.+|.+.|++++|.+.+++..+.
T Consensus 263 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 263 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.22 E-value=2.4e-06 Score=85.21 Aligned_cols=97 Identities=10% Similarity=-0.074 Sum_probs=78.1
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHH
Q 038364 838 PTIEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNL 915 (1076)
Q Consensus 838 p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~ 915 (1076)
|+...+.-.+..|.+.|++++|++.|++. . .+.++..|..+..+|...|+++.|+..++++++++|+++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 45555566677788888888888888775 2 234566888888888888999999999999999999888888889999
Q ss_pred HHHcCChHHHHHHHHHHHh
Q 038364 916 LAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 916 y~~~G~~~eA~~~~~~m~~ 934 (1076)
|.+.|++++|...+++..+
T Consensus 82 ~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999888887754
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=6e-06 Score=74.89 Aligned_cols=89 Identities=15% Similarity=0.126 Sum_probs=71.1
Q ss_pred HHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHH
Q 038364 847 VDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWED 924 (1076)
Q Consensus 847 i~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~e 924 (1076)
.+.+.+.|++++|+..|++. . .+.+...|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence 45677778888888888775 2 334566788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhC
Q 038364 925 VERLRHSMDEV 935 (1076)
Q Consensus 925 A~~~~~~m~~~ 935 (1076)
|.+.+++..+.
T Consensus 90 A~~~~~~a~~~ 100 (117)
T d1elwa_ 90 AKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 88888887543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=3.5e-05 Score=76.38 Aligned_cols=139 Identities=11% Similarity=-0.008 Sum_probs=103.1
Q ss_pred HHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHH
Q 038364 745 IDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEG 823 (1076)
Q Consensus 745 i~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA 823 (1076)
...+...|+++.|.+.|+++.+++...|..+...|...|++++|++.|++.++ +.|+. ..|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHH
Confidence 45677889999999999999888888999999999999999999999999998 45655 4677777888999999999
Q ss_pred HHHHHHhhhcCCCCCCcc-cHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcC
Q 038364 824 WKYFDSMSTDYNIIPTIE-HYSCMVDLLGKAGYLDEAWDFIRTMPFKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKL 901 (1076)
Q Consensus 824 ~~~~~~m~~~~g~~p~~~-~y~~li~~l~r~G~l~eA~~l~~~m~~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l 901 (1076)
.+.|++.... ..++.. .|.. .| +..+.+ ..++..+..++...|++++|...+++++++
T Consensus 90 ~~~~~kAl~~--~~~n~~~~~~~-------~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 90 IKDLKEALIQ--LRGNQLIDYKI-------LG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHT--TTTCSEEECGG-------GT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh--CccCchHHHHH-------hh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999887642 111111 0000 00 011111 235566777788889999999999988888
Q ss_pred CCCC
Q 038364 902 EPCN 905 (1076)
Q Consensus 902 ~P~~ 905 (1076)
.|+.
T Consensus 150 ~~~~ 153 (192)
T d1hh8a_ 150 KSEP 153 (192)
T ss_dssp CCSG
T ss_pred CCCc
Confidence 8865
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.04 E-value=0.00014 Score=76.97 Aligned_cols=163 Identities=9% Similarity=-0.073 Sum_probs=83.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHH-cCCHHHHHHHHHHHHH----CCCCCCH-H
Q 038364 741 ATGLIDMYSKSGNLKSAREVFRKSAN-----KT----LASWNCMIMGFAI-YGNGKEAILLFHELLE----TGFQPDA-I 805 (1076)
Q Consensus 741 ~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d----~~s~n~li~~~~~-~g~~~~Al~l~~~M~~----~g~~Pd~-~ 805 (1076)
|..+..+|.+.|++++|.+.+++..+ .+ ...+..+...|.. .|++++|++.|++..+ .+-.+.. .
T Consensus 80 ~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~ 159 (290)
T d1qqea_ 80 YVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNK 159 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhh
Confidence 33344445555555555544443221 11 1233444555533 4777777777766543 1211211 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCc-----ccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC------HH
Q 038364 806 TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTI-----EHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD------AT 873 (1076)
Q Consensus 806 t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~-----~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd------~~ 873 (1076)
++..+...+...|++++|.++|+++.....-.+.. ..+..++..+...|+.+.|.+.+++. .+.|+ ..
T Consensus 160 ~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~ 239 (290)
T d1qqea_ 160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESN 239 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HH
T ss_pred HHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHH
Confidence 45556666777777787877777765532111111 12334445556677777777777776 22221 22
Q ss_pred HHHHHHHHHHHc--CCchHHHHHHHHHhcCCC
Q 038364 874 IWGALLGSCRIH--GHLEYAEIASRRLFKLEP 903 (1076)
Q Consensus 874 ~~~~Ll~a~~~~--g~~e~A~~~~~~l~~l~P 903 (1076)
....++.++... +.+++|+..|+++.+++|
T Consensus 240 ~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 240 FLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 345555555442 235666666666666654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.04 E-value=5.6e-06 Score=74.46 Aligned_cols=91 Identities=14% Similarity=-0.054 Sum_probs=81.5
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHc
Q 038364 842 HYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMS 919 (1076)
Q Consensus 842 ~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~ 919 (1076)
.+-.+...+.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..|+.+|...
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence 3445677888999999999999987 3445 5779999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHH
Q 038364 920 NRWEDVERLRHSM 932 (1076)
Q Consensus 920 G~~~eA~~~~~~m 932 (1076)
|++++|.+.+++.
T Consensus 98 g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 98 HNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999874
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.00 E-value=2.9e-05 Score=82.52 Aligned_cols=192 Identities=12% Similarity=-0.001 Sum_probs=130.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HHH
Q 038364 741 ATGLIDMYSKSGNLKSAREVFRKSAN-----KT----LASWNCMIMGFAIYGNGKEAILLFHELLETGF---QPD--AIT 806 (1076)
Q Consensus 741 ~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d----~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~---~Pd--~~t 806 (1076)
|.-..++|..+|++++|.+.|.+..+ .+ ..+|+.+...|.+.|++++|++.+++..+.-. .+. ..+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 44456789999999999999886543 22 24788999999999999999999998764211 111 234
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHhhhcC---CCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhCC-CC---C----CH-
Q 038364 807 FTALLAACK-NSGLVEEGWKYFDSMSTDY---NIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTMP-FK---P----DA- 872 (1076)
Q Consensus 807 ~~~ll~a~~-~~g~~~eA~~~~~~m~~~~---g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m~-~~---p----d~- 872 (1076)
+..+...|. ..|++++|.+.+++..+-+ +..+. ..+|..+...|.+.|++++|.+.+++.. .. + ..
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 555665664 4699999999998875422 11111 3457788999999999999999998851 11 1 11
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchh--H---HHHHHHHHH--cCChHHHHHHHHHH
Q 038364 873 TIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSAN--Y---NLMMNLLAM--SNRWEDVERLRHSM 932 (1076)
Q Consensus 873 ~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~--y---~~L~~~y~~--~G~~~eA~~~~~~m 932 (1076)
..+...+..+...|+.+.|...+++..+++|....+ + ..|+..|.. .+++++|..-++++
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 233445556778899999999999999999865433 3 334444444 35688888887655
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=1.7e-05 Score=71.78 Aligned_cols=104 Identities=13% Similarity=0.030 Sum_probs=83.9
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCC
Q 038364 811 LAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGH 887 (1076)
Q Consensus 811 l~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~ 887 (1076)
...+...|++++|...|+...+. .|+ ...|..+..+|.+.|++++|++.+++. . .+.+...|..+..++...|+
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 34466778888888888887653 343 567888888888888888888888876 2 34567789999999999999
Q ss_pred chHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 888 LEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 888 ~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
+++|+..++++++++|+++..+..+.++-+
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 999999999999999999888888777654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=4.4e-05 Score=73.02 Aligned_cols=90 Identities=14% Similarity=0.052 Sum_probs=75.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChH
Q 038364 846 MVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWE 923 (1076)
Q Consensus 846 li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~ 923 (1076)
....|.+.|++++|...|++. .. +-+...|..+...+...|++++|...++++++++|++..+|..++.+|...|+++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 356677888888888888876 23 3456688888888899999999999999999999999889999999999999999
Q ss_pred HHHHHHHHHHhC
Q 038364 924 DVERLRHSMDEV 935 (1076)
Q Consensus 924 eA~~~~~~m~~~ 935 (1076)
+|.+.+++..+.
T Consensus 96 eA~~~~~~a~~~ 107 (159)
T d1a17a_ 96 AALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999988888553
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.79 E-value=0.036 Score=58.64 Aligned_cols=130 Identities=12% Similarity=0.151 Sum_probs=69.0
Q ss_pred ChHHHHHHHHHHhcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038364 328 DVHLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACA 407 (1076)
Q Consensus 328 d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~ 407 (1076)
|.+--..+.+.+.+.|.++.|..+|..+.. |..++..|.+.+++++|++++.+.. +..+|..+..+|.
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACV 80 (336)
T ss_dssp ----------------CTTTHHHHHHHTTC------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHH
Confidence 333334455566677888888888877766 7788888888888888888877542 4557777777777
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcC---CCChhHHHHHHHHHHh
Q 038364 408 KVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMK---DHNLSSWNSMISSYTG 474 (1076)
Q Consensus 408 ~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~---~~d~~s~n~lI~~~~~ 474 (1076)
+......+ .+.......+..-...++..|-..|..++...+++... ..+...++-++..|++
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak 145 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 145 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHH
Confidence 65544322 12222223344444456666666666666555555431 2233344445555544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.77 E-value=2.3e-05 Score=77.81 Aligned_cols=115 Identities=12% Similarity=-0.065 Sum_probs=80.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHH
Q 038364 802 PDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD-ATIWGAL 878 (1076)
Q Consensus 802 Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd-~~~~~~L 878 (1076)
|+...+.-.-..+...|++++|...|++..+. .|+ ...|..+..+|.+.|++++|.+.+++. .+.|+ ...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 55555555566677777777777777776543 343 556777777888888888888888775 45554 5578888
Q ss_pred HHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHc
Q 038364 879 LGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMS 919 (1076)
Q Consensus 879 l~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~ 919 (1076)
..++...|++++|+..++++++++|++...+...+..+...
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~ 119 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 88888888888888888888888876655544444444333
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=9.4e-05 Score=70.59 Aligned_cols=114 Identities=10% Similarity=-0.047 Sum_probs=87.5
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCc
Q 038364 812 AACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHL 888 (1076)
Q Consensus 812 ~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~ 888 (1076)
..|.+.|++++|...|++..+. .|+ ...|..+...|.+.|++++|.+.|++. ...| +...|..+..++...|++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHhhhcccc---chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 3466778888888888777653 344 567777888888888888888888876 3334 556899999999999999
Q ss_pred hHHHHHHHHHhcCCCCCchhHHHHHHHHH--HcCChHHHHHH
Q 038364 889 EYAEIASRRLFKLEPCNSANYNLMMNLLA--MSNRWEDVERL 928 (1076)
Q Consensus 889 e~A~~~~~~l~~l~P~~~~~y~~L~~~y~--~~G~~~eA~~~ 928 (1076)
++|...++++++++|+++..+..+..+.. ..+.+++|...
T Consensus 95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 95 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999988877766643 34456666544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=0.00055 Score=67.39 Aligned_cols=88 Identities=11% Similarity=0.011 Sum_probs=79.4
Q ss_pred HHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHH
Q 038364 438 ISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVL 517 (1076)
Q Consensus 438 i~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al 517 (1076)
...+...|+++.|.+.|+++..++...|..+-..|...|++++|++.|++..+.... +...|..+..++.+.|++++|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHHHH
Confidence 445678899999999999999999999999999999999999999999999988766 7889999999999999999999
Q ss_pred HHHHHHHhc
Q 038364 518 TLLRGMQSL 526 (1076)
Q Consensus 518 ~l~~~m~~~ 526 (1076)
+.|++....
T Consensus 91 ~~~~kAl~~ 99 (192)
T d1hh8a_ 91 KDLKEALIQ 99 (192)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999987653
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=3e-05 Score=70.59 Aligned_cols=106 Identities=16% Similarity=-0.025 Sum_probs=79.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCH---HHHHHHHHhC-CCCCCH---HHHHHHHH
Q 038364 809 ALLAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYL---DEAWDFIRTM-PFKPDA---TIWGALLG 880 (1076)
Q Consensus 809 ~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l---~eA~~l~~~m-~~~pd~---~~~~~Ll~ 880 (1076)
.+++.+...+++++|.+.|+..... .| ++.++..+..+|.+.++. ++|++++++. ...|+. .+|..|..
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~---~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAA---GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 4667777778888888888887653 34 456777778888775554 4588888886 334433 37888899
Q ss_pred HHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 881 SCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 881 a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
+|...|++++|+..++++++++|++..+...+..+..
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999777666655443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=0.0002 Score=69.15 Aligned_cols=62 Identities=10% Similarity=-0.075 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 874 IWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 874 ~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
+|..+..+|.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 56667777888888888888888888888888888888888888888888888888887553
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=0.00022 Score=68.82 Aligned_cols=133 Identities=11% Similarity=-0.016 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHH
Q 038364 771 SWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLL 850 (1076)
Q Consensus 771 s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l 850 (1076)
.+......+.+.|++++|+..|++.++. .|... +..+.-......+. ...|+.+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~------------~~~~~~~~~~~~~~--------~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYES------------SFSNEEAQKAQALR--------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCC------------CCCSHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhcc------------ccchHHHhhhchhH--------HHHHHHHHHHH
Confidence 4455667788888888888888887752 11110 00000111111111 13466788889
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHH
Q 038364 851 GKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDV 925 (1076)
Q Consensus 851 ~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA 925 (1076)
.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|+++.....+..++.+.++..+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999886 3445 6778999999999999999999999999999999999999999998877766554
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.62 E-value=0.00033 Score=66.24 Aligned_cols=83 Identities=11% Similarity=-0.011 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCCCccCcceEEEEECCEE
Q 038364 873 TIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVGVKSVLVWSWIQIDQIV 952 (1076)
Q Consensus 873 ~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g~~~~~~~swi~~~~~~ 952 (1076)
.+|..+..++.+.|+++.|+..++++++++|++..+|..++.+|...|++++|...+++..+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~---------------- 131 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN---------------- 131 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----------------
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC----------------
Confidence 4677788889999999999999999999999999999999999999999999999999986532
Q ss_pred EEEEeCCCCCcCcHHHHHHHHHHHHHHHH
Q 038364 953 HVFSAEGAPHPATGEIYFELYHLVSEMKK 981 (1076)
Q Consensus 953 ~~f~~~~~~~~~~~~i~~~l~~l~~~m~~ 981 (1076)
|...++...+..+..++++
T Consensus 132 ----------P~n~~~~~~l~~~~~kl~~ 150 (153)
T d2fbna1 132 ----------PNNLDIRNSYELCVNKLKE 150 (153)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHH
T ss_pred ----------CCCHHHHHHHHHHHHHHHH
Confidence 4455666666666666654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.50 E-value=0.00031 Score=67.55 Aligned_cols=64 Identities=6% Similarity=-0.065 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 872 ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 872 ~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4467788888999999999999999999999999999999999999999999999999998664
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.49 E-value=0.00014 Score=66.03 Aligned_cols=94 Identities=4% Similarity=-0.132 Sum_probs=77.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHc---CCchHHHHHHHHHhcCCCCC--chhHHHHHHH
Q 038364 843 YSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIH---GHLEYAEIASRRLFKLEPCN--SANYNLMMNL 915 (1076)
Q Consensus 843 y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~---g~~e~A~~~~~~l~~l~P~~--~~~y~~L~~~ 915 (1076)
...+++.+...+++++|++.|++. .. +.+..++..+..++.+. +++++|+..++++++.+|.+ ..++..|+.+
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456788889999999999999997 33 45667888888888654 45667999999999998765 3478999999
Q ss_pred HHHcCChHHHHHHHHHHHhCC
Q 038364 916 LAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 916 y~~~G~~~eA~~~~~~m~~~g 936 (1076)
|.+.|++++|.+.+++..+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhhHHHHHHHHHHHHhC
Confidence 999999999999999996643
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=0.00013 Score=66.96 Aligned_cols=90 Identities=10% Similarity=0.022 Sum_probs=75.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCch-------hHHHHHH
Q 038364 844 SCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSA-------NYNLMMN 914 (1076)
Q Consensus 844 ~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~-------~y~~L~~ 914 (1076)
.-+.+.|.+.|++++|++.|++. .. +.+...|..+..+|...|+++.|+..++++++++|+++. +|..+++
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 35678888999999999999886 23 345778999999999999999999999999999988765 4566777
Q ss_pred HHHHcCChHHHHHHHHHHH
Q 038364 915 LLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 915 ~y~~~G~~~eA~~~~~~m~ 933 (1076)
.+...+++++|.+.+++..
T Consensus 88 ~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 8888999999999998764
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.48 E-value=0.0053 Score=62.96 Aligned_cols=229 Identities=10% Similarity=-0.005 Sum_probs=122.3
Q ss_pred hHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038364 668 VVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDM 747 (1076)
Q Consensus 668 ~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~ 747 (1076)
+..+..|-..+.+.+++++|++.|++..+.| |...+..|-..+..-. |
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~---------------~-------------- 49 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQ---------------G-------------- 49 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS---------------S--------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC---------------C--------------
Confidence 4455556666666777777777777766544 2222222222222200 0
Q ss_pred HhhcCCHHHHHHHHHhcCCC-ChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCH
Q 038364 748 YSKSGNLKSAREVFRKSANK-TLASWNCMIMGFAI----YGNGKEAILLFHELLETGFQPDAITFTALLAA--CKNSGLV 820 (1076)
Q Consensus 748 y~k~G~~~~A~~vf~~m~~~-d~~s~n~li~~~~~----~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a--~~~~g~~ 820 (1076)
...+...|...+.....+ +...+..+...+.. .++.++|+..+++..+.|..+... ....... .......
T Consensus 50 --~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~-~l~~~~~~~~~~~~~~ 126 (265)
T d1ouva_ 50 --VEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCA-SLGGIYHDGKVVTRDF 126 (265)
T ss_dssp --SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHCSSSCCCH
T ss_pred --cchhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHH-hhcccccCCCcccchh
Confidence 023344444444433322 22333333333322 345566666666666544221111 1111111 1123345
Q ss_pred HHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCchHHH
Q 038364 821 EEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGK----AGYLDEAWDFIRTMPFKPDATIWGALLGSCRI----HGHLEYAE 892 (1076)
Q Consensus 821 ~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r----~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~----~g~~e~A~ 892 (1076)
..+...+...... .+...+..|...|.. ..+...+..+++...-..+...+..|...+.. ..|.+.|+
T Consensus 127 ~~a~~~~~~~~~~----~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~ 202 (265)
T d1ouva_ 127 KKAVEYFTKACDL----NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEAL 202 (265)
T ss_dssp HHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHH
T ss_pred HHHHHHhhhhhcc----cccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhh
Confidence 5555555554332 334455555555554 34555666666654323455666566555554 56889999
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHH----cCChHHHHHHHHHHHhCCC
Q 038364 893 IASRRLFKLEPCNSANYNLMMNLLAM----SNRWEDVERLRHSMDEVGV 937 (1076)
Q Consensus 893 ~~~~~l~~l~P~~~~~y~~L~~~y~~----~G~~~eA~~~~~~m~~~g~ 937 (1076)
..++++.+.+ ++..+..|+.+|.+ ..+.++|.+.+++.-+.|.
T Consensus 203 ~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 203 ARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 9999988774 56788889999976 3368889999999877773
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.43 E-value=0.00074 Score=64.78 Aligned_cols=91 Identities=10% Similarity=-0.024 Sum_probs=74.7
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHc
Q 038364 842 HYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMS 919 (1076)
Q Consensus 842 ~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~ 919 (1076)
.|..+..+|.+.|++++|+..+++. . .+.+...|..+..++...|++++|+..++++++++|+++.+...+..+..+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4566778889999999999999886 2 3456778999999999999999999999999999999999999999888777
Q ss_pred CChHH-HHHHHHHH
Q 038364 920 NRWED-VERLRHSM 932 (1076)
Q Consensus 920 G~~~e-A~~~~~~m 932 (1076)
+...+ ..+++.+|
T Consensus 146 ~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 146 KEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHH
Confidence 66543 45555555
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.39 E-value=0.0011 Score=63.55 Aligned_cols=86 Identities=9% Similarity=-0.041 Sum_probs=71.7
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..++++++++|++...+..|..++.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 156 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 446677888899999999999999886 4445 56689999999999999999999999999999999998888888776
Q ss_pred HcCChHHH
Q 038364 918 MSNRWEDV 925 (1076)
Q Consensus 918 ~~G~~~eA 925 (1076)
+.....++
T Consensus 157 ~l~~~~~~ 164 (169)
T d1ihga1 157 KIKAQKDK 164 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.38 E-value=2.1e-05 Score=90.64 Aligned_cols=95 Identities=15% Similarity=-0.066 Sum_probs=44.3
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAM 918 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~ 918 (1076)
...+..+...+.+.|+.++|...+++.. .++ ...+..+...++..|++++|+..++++++++|++...|+.|+.+|..
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~ 198 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSC-SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS 198 (497)
T ss_dssp -----------------------CCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 3455556666666666666655443321 111 23455566666667777777777777777777777777777777777
Q ss_pred cCChHHHHHHHHHHHhC
Q 038364 919 SNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 919 ~G~~~eA~~~~~~m~~~ 935 (1076)
.|+..+|...+.+....
T Consensus 199 ~~~~~~A~~~y~ral~~ 215 (497)
T d1ya0a1 199 KGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp TTCHHHHHHHHHHHHSS
T ss_pred cCCHHHHHHHHHHHHhC
Confidence 77777776666665443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.34 E-value=0.001 Score=63.79 Aligned_cols=63 Identities=13% Similarity=0.004 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 873 TIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 873 ~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
.+|..+..++.+.|++++|+..++++++++|++..+|..++.+|...|++++|.+.+++..+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356667778899999999999999999999999999999999999999999999999998653
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.33 E-value=0.078 Score=55.97 Aligned_cols=177 Identities=9% Similarity=0.035 Sum_probs=104.8
Q ss_pred CCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhcCCCCChhhHHHHHHH
Q 038364 291 IFRSRILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMV 370 (1076)
Q Consensus 291 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~ 370 (1076)
.||.+--..+.+-|-+.|..+.|..++..+ .-+..++..|.+.+++..|..++... .+..+|..+...
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~---~~~~~~k~~~~~ 78 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA---NSTRTWKEVCFA 78 (336)
T ss_dssp CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH---TCHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHc---CCHHHHHHHHHH
Confidence 366666677778888888888888887642 23567778888899999888887755 456689999999
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHH
Q 038364 371 KLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELA 450 (1076)
Q Consensus 371 ~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A 450 (1076)
+.+.....-| .+.......+......++..+-..|..++...+++..+.. -..+..+++-|+.+|++.+. +.-
T Consensus 79 l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~kl 151 (336)
T d1b89a_ 79 CVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QKM 151 (336)
T ss_dssp HHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HHH
T ss_pred HHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HHH
Confidence 8888766543 2223334556667778889999999999888888876533 24577788999999998753 333
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHH
Q 038364 451 TRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKM 488 (1076)
Q Consensus 451 ~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M 488 (1076)
.+.+.... +.....-++..|-+.+.++++.-++.++
T Consensus 152 ~e~l~~~s--~~y~~~k~~~~c~~~~l~~elv~Ly~~~ 187 (336)
T d1b89a_ 152 REHLELFW--SRVNIPKVLRAAEQAHLWAELVFLYDKY 187 (336)
T ss_dssp HHHHHHHS--TTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHHHhcc--ccCCHHHHHHHHHHcCChHHHHHHHHhc
Confidence 33333321 2222333444555555544444444433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.23 E-value=0.058 Score=54.71 Aligned_cols=222 Identities=10% Similarity=-0.050 Sum_probs=117.2
Q ss_pred cchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhc----CCChhHHHHHHHHHhhcCCCCChhhHHHH
Q 038364 634 VSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQ----NENYRESLKFFIQMQQEDIKPNSTTMSSL 709 (1076)
Q Consensus 634 ~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~----~g~~~eAl~l~~~m~~~gi~pd~~t~~~l 709 (1076)
..+..|-..+.+.+++++|.+.|++..+.| +...+..|-..|.. ..+...|...+......+. | .....+
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~-~--~a~~~l 76 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY-S--NGCHLL 76 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-H--HHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc-c--chhhcc
Confidence 345556667778999999999999998865 55666666666665 5577778888877765542 2 222222
Q ss_pred HHHH----hcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHh----hcCCHHHHHHHHHhcC-CCChHHHHHHHHHHH
Q 038364 710 LQTC----GGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYS----KSGNLKSAREVFRKSA-NKTLASWNCMIMGFA 780 (1076)
Q Consensus 710 L~a~----~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~----k~G~~~~A~~vf~~m~-~~d~~s~n~li~~~~ 780 (1076)
...+ ....+.+.+...+....+.|.... ...+...+. .......|...+.... ..+...|..|...|.
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~ 153 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEG---CASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYD 153 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccchhhHHHHHHHhhhhhhhhhhH---HHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhc
Confidence 2222 224455666666666666543211 112222222 2334444544444332 234445555544444
Q ss_pred H----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh----
Q 038364 781 I----YGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGK---- 852 (1076)
Q Consensus 781 ~----~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r---- 852 (1076)
. ..+...+..+++...+.| +......+..+|..
T Consensus 154 ~~~~~~~~~~~~~~~~~~a~~~g---------------------------------------~~~A~~~lg~~y~~g~~~ 194 (265)
T d1ouva_ 154 AGRGTPKDLKKALASYDKACDLK---------------------------------------DSPGCFNAGNMYHHGEGA 194 (265)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---------------------------------------CHHHHHHHHHHHHHTCSS
T ss_pred cCCCcccccccchhhhhcccccc---------------------------------------ccccccchhhhcccCccc
Confidence 3 223333444444433322 22222233333332
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHhcCCC
Q 038364 853 AGYLDEAWDFIRTMPFKPDATIWGALLGSCRI----HGHLEYAEIASRRLFKLEP 903 (1076)
Q Consensus 853 ~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~----~g~~e~A~~~~~~l~~l~P 903 (1076)
..+.++|..+|++....-++..+..|...|.. ..|.++|...++++.+..+
T Consensus 195 ~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 195 TKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred ccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 34566666666665222344555555555543 3377788888888766554
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.18 E-value=0.0019 Score=60.66 Aligned_cols=127 Identities=15% Similarity=-0.033 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHH
Q 038364 770 ASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDL 849 (1076)
Q Consensus 770 ~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~ 849 (1076)
..+......+.+.|++++|+..|++.++. .|... ...-+........+ ...+|+.+...
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~-----------~~~~~~~~~~~~~~--------~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTE-----------EWDDQILLDKKKNI--------EISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCT-----------TCCCHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchh-----------hhhhHHHHHhhhhH--------HHHHHhhHHHH
Confidence 46677788888999999999999988762 11110 00000000000111 12356778889
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 850 LGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 850 l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
|.+.|++++|++.+++. ...| +..+|..+..++...|++++|+..++++++++|++......+..+..
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999886 3444 66799999999999999999999999999999999888777666543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.08 E-value=0.00093 Score=64.81 Aligned_cols=111 Identities=8% Similarity=0.009 Sum_probs=80.1
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHH
Q 038364 812 AACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYA 891 (1076)
Q Consensus 812 ~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A 891 (1076)
......|++++|.+.|.....-+.-.+-... ...........-++. -....|..+..++...|++++|
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~--------~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~~~A 86 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPVLDDL--------RDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRASAV 86 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG--------TTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccccccC--------cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCchHH
Confidence 4577889999999999988764321111100 000011111111111 1234678889999999999999
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 892 EIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 892 ~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
+..++++++++|.+...|..++.+|.+.|++++|.+.+++++.
T Consensus 87 l~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 87 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999743
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.74 E-value=0.0017 Score=61.18 Aligned_cols=64 Identities=9% Similarity=-0.114 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC-------C----chhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 872 ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC-------N----SANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 872 ~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~-------~----~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
...|+.+..++...|++++|...+++.+++.|+ . ...|+.++.+|...|++++|.+.+++..+.
T Consensus 55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777888888888888888888887765332 1 235788999999999999999999997553
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=96.67 E-value=0.0037 Score=55.12 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=50.2
Q ss_pred HHHhCCChHHHHHHHHhcC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhH
Q 038364 440 MYSRNNKLELATRVFDSMK---DHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNV 516 (1076)
Q Consensus 440 ~y~k~g~~~~A~~lf~~m~---~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~A 516 (1076)
.+.+.|++++|...|++.. ..+...|..+...+.+.|++++|+..|++..+..+. +..+|..+...|...|++++|
T Consensus 25 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~~~A 103 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANAA 103 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCCHHHH
Confidence 4455566666666666542 124456666666666666666666666666655444 556666666666666666666
Q ss_pred HHHHHHH
Q 038364 517 LTLLRGM 523 (1076)
Q Consensus 517 l~l~~~m 523 (1076)
++.|++.
T Consensus 104 ~~~l~~~ 110 (112)
T d1hxia_ 104 LASLRAW 110 (112)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.64 E-value=0.0022 Score=54.77 Aligned_cols=73 Identities=11% Similarity=0.076 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHH
Q 038364 843 YSCMVDLLGKAGYLDEAWDFIRTM----P----FKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMM 913 (1076)
Q Consensus 843 y~~li~~l~r~G~l~eA~~l~~~m----~----~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~ 913 (1076)
+--+...+.+.|++++|.+.+++. + ..++ ..++..|..++.+.|++++|+..++++++++|+++.++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 345667777778877777777664 1 1223 457889999999999999999999999999999988877765
Q ss_pred HH
Q 038364 914 NL 915 (1076)
Q Consensus 914 ~~ 915 (1076)
..
T Consensus 88 ~~ 89 (95)
T d1tjca_ 88 YF 89 (95)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.63 E-value=0.00071 Score=63.22 Aligned_cols=86 Identities=7% Similarity=-0.060 Sum_probs=59.9
Q ss_pred HhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHH----------cCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 038364 851 GKAGYLDEAWDFIRTM-PFK-PDATIWGALLGSCRI----------HGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAM 918 (1076)
Q Consensus 851 ~r~G~l~eA~~l~~~m-~~~-pd~~~~~~Ll~a~~~----------~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~ 918 (1076)
-|.+.+++|.+.+++. ... .++.+|..+..++.. .+.+++|+..++++++++|+++.+|..++.+|..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 3445555666655554 222 234455555555442 2446789999999999999999999999999988
Q ss_pred cCC-----------hHHHHHHHHHHHhCC
Q 038364 919 SNR-----------WEDVERLRHSMDEVG 936 (1076)
Q Consensus 919 ~G~-----------~~eA~~~~~~m~~~g 936 (1076)
.|+ +++|.+.+++..+..
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l~ 116 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVDEQ 116 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccchhhHHHHHHhHHHhhhhhhcccccC
Confidence 765 588888888876543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.52 E-value=0.0024 Score=57.92 Aligned_cols=63 Identities=13% Similarity=0.023 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 873 TIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 873 ~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
..+..+...+...|++++|+..|+++++++|+++..|..++.+|.+.|+|++|.+.++++.+.
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 67 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHh
Confidence 346678889999999999999999999999999999999999999999999999999998654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.44 E-value=0.0012 Score=61.63 Aligned_cols=74 Identities=11% Similarity=0.071 Sum_probs=44.7
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-----------CchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChH
Q 038364 857 DEAWDFIRTM-PFKP-DATIWGALLGSCRIHG-----------HLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWE 923 (1076)
Q Consensus 857 ~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g-----------~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~ 923 (1076)
++|.+.+++. .+.| +..+|..+..++...| +++.|...|+++++++|++..++..|....
T Consensus 58 ~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~------- 130 (145)
T d1zu2a1 58 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA------- 130 (145)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH-------
Confidence 4444444443 1222 3345555555554332 468899999999999999977776666654
Q ss_pred HHHHHHHHHHhCCC
Q 038364 924 DVERLRHSMDEVGV 937 (1076)
Q Consensus 924 eA~~~~~~m~~~g~ 937 (1076)
.|.++..+..+.|+
T Consensus 131 ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 131 KAPQLHAEAYKQGL 144 (145)
T ss_dssp THHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhc
Confidence 45555555555543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.98 E-value=0.01 Score=57.13 Aligned_cols=71 Identities=11% Similarity=0.201 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHH-----hcCCCCCcc
Q 038364 462 LSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQ-----SLGFRPNGS 533 (1076)
Q Consensus 462 ~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~-----~~gi~pd~~ 533 (1076)
+..|..+...+.+.|++++|+..++++.+.... +...|..++.+|.+.|+..+|++.|+++. +.|+.|...
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 346777788888888888888888888877665 77888888888888888888888888764 357777643
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.83 E-value=0.0089 Score=67.78 Aligned_cols=219 Identities=11% Similarity=0.040 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHcCCCCC-ccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCch-HHHHHHHHHHhcCCChhHHHHHHHH
Q 038364 616 NAKKMLNQMEEEEIKPD-LVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNV-VTWTSLISGSLQNENYRESLKFFIQ 693 (1076)
Q Consensus 616 ~A~~lf~~M~~~g~~pd-~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~-~ty~~LI~~~~~~g~~~eAl~l~~~ 693 (1076)
+|.+.|++..+. +|| ...+..+...|...|++++| |+++... .|+. ..++ +....-...+..+.+.+++
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~--~e~~Lw~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKK--VEQDLWNHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHT--HHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHh--HHHHHHHHHHHHHHHHHHH
Confidence 566666666543 344 34556666777777777665 4444322 1110 0011 0011111123445555555
Q ss_pred HhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHc-----CCCC-ChhhHHHHHHHHhhcCCHHHHHHHHHhcCCC
Q 038364 694 MQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKN-----GFIK-DAYVATGLIDMYSKSGNLKSAREVFRKSANK 767 (1076)
Q Consensus 694 m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~-----g~~~-d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~ 767 (1076)
..+..-.++..-....+..+ +..+...+..++.. ++.| +...+..+...+.+.|+.++|...++.....
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~-----l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 149 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLF-----LEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY 149 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHH-----HHHHHHHHHHHHHHHTC-------------------------------CCHHHHH
T ss_pred hcccccCccHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC
Confidence 55433333332222222111 12233333322211 1222 3344555666666666666666555443322
Q ss_pred Ch-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHH
Q 038364 768 TL-ASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSC 845 (1076)
Q Consensus 768 d~-~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~ 845 (1076)
+. .++..+...+...|++++|+..|++..+ +.|+. .+|+.+...+...|+..+|...|.+.... -.|-...+..
T Consensus 150 ~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~--~~~~~~a~~n 225 (497)
T d1ya0a1 150 ICQHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV--KFPFPAASTN 225 (497)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SBCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCHHHHHH
Confidence 22 3455566666777777777777777666 45555 46666666666777777777766666531 2333455556
Q ss_pred HHHHHHh
Q 038364 846 MVDLLGK 852 (1076)
Q Consensus 846 li~~l~r 852 (1076)
|..+|.+
T Consensus 226 L~~~~~~ 232 (497)
T d1ya0a1 226 LQKALSK 232 (497)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=95.80 E-value=0.0024 Score=65.94 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=26.7
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 038364 781 IYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMST 832 (1076)
Q Consensus 781 ~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~ 832 (1076)
+.|+.++|+..+++.++ ..|+. ..+..+...++..|++++|.+.++...+
T Consensus 8 ~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34555666666655555 23333 3445555555555555555555555543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=95.80 E-value=0.02 Score=53.39 Aligned_cols=32 Identities=6% Similarity=-0.212 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC
Q 038364 874 IWGALLGSCRIHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 874 ~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
.+..+..++...|++++|+..+++++++.|+.
T Consensus 102 a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 102 AVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 46677888999999999999999998886654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.77 E-value=0.017 Score=48.93 Aligned_cols=63 Identities=6% Similarity=-0.085 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC-------chhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 873 TIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN-------SANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 873 ~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~-------~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
..+-.+...+.+.|+++.|+..+++++++.|.+ ..+|..|+.+|.+.|++++|.+.+++..+.
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 344567888999999999999999999875543 356899999999999999999999998654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=95.61 E-value=0.0074 Score=62.13 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=57.6
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCchHHH
Q 038364 816 NSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD-ATIWGALLGSCRIHGHLEYAE 892 (1076)
Q Consensus 816 ~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd-~~~~~~Ll~a~~~~g~~e~A~ 892 (1076)
+.|++++|...+++..+. .| +...+..++.+|++.|++++|.+.++.. ...|+ ...+..+...+...+..+++.
T Consensus 8 ~~G~l~eAl~~l~~al~~---~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence 346666666666666542 23 3456666666666666666666666654 23343 234444444433332222222
Q ss_pred HHHHHH-hcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 893 IASRRL-FKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 893 ~~~~~l-~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
...... ...+|++...+...+..+.+.|+.++|.+.+++..+.
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 111111 1123333344455556666666666666666665543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.10 E-value=0.7 Score=39.99 Aligned_cols=141 Identities=13% Similarity=0.088 Sum_probs=91.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHH
Q 038364 779 FAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDE 858 (1076)
Q Consensus 779 ~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~e 858 (1076)
+...|..++..++..+... ..+..-|+-++.-....-+-+-..+.++.+-+-+.+.|-.- ...++..+.+.+.
T Consensus 12 ~ildG~ve~Gveii~k~~~---ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~N-lk~vv~C~~~~n~--- 84 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQN-LKSVVECGVINNT--- 84 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSC-THHHHHHHHHTTC---
T ss_pred HHHhhhHHhHHHHHHHHcc---cCCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhc-HHHHHHHHHHhcc---
Confidence 3445666666666666655 22344455555544555555556666666644444333211 1223333333332
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCCCc
Q 038364 859 AWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVGVK 938 (1076)
Q Consensus 859 A~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g~~ 938 (1076)
+..-..-.++...++|.-+.-.+++..+++-+.-+++...-++++|.+.|...||-+++.+.=++|++
T Consensus 85 ------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 85 ------------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp ------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 33344556777888899999999999988876667888999999999999999999999999888865
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=85.55 E-value=2.1 Score=37.55 Aligned_cols=82 Identities=6% Similarity=-0.095 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHH----cCChHHH
Q 038364 854 GYLDEAWDFIRTMPFKPDATIWGALLGSCRI----HGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAM----SNRWEDV 925 (1076)
Q Consensus 854 G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~----~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~----~G~~~eA 925 (1076)
.+.++|.+++++.-..-++.....|...+.. ..|.++|.+.+++..+.. ++.....|+.+|.. ..+.++|
T Consensus 37 ~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A 114 (133)
T d1klxa_ 37 INKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQA 114 (133)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred cCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHH
Confidence 4555666666554222234444444444433 456788888888887654 46778888888877 4568899
Q ss_pred HHHHHHHHhCCC
Q 038364 926 ERLRHSMDEVGV 937 (1076)
Q Consensus 926 ~~~~~~m~~~g~ 937 (1076)
.+.+++.-+.|.
T Consensus 115 ~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 115 VKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 999999887774
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=84.77 E-value=11 Score=32.32 Aligned_cols=133 Identities=14% Similarity=0.050 Sum_probs=87.6
Q ss_pred hcCCHHHHHHHHHhcCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038364 750 KSGNLKSAREVFRKSAN-KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFD 828 (1076)
Q Consensus 750 k~G~~~~A~~vf~~m~~-~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~ 828 (1076)
-.|.+++..++..+... .+..-||=+|--....-+-+-..+.++..-. --| .+..+++......+-
T Consensus 14 ldG~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~---~FD----------ls~C~Nlk~vv~C~~ 80 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVVECGV 80 (161)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHHHHHH
T ss_pred HhhhHHhHHHHHHHHcccCCccccceeeeecccccchHHHHHHHHHHhh---hcC----------chhhhcHHHHHHHHH
Confidence 35777888888877654 3444455555444444444444444433322 111 234455655555554
Q ss_pred HhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcC
Q 038364 829 SMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM--PFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKL 901 (1076)
Q Consensus 829 ~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m--~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l 901 (1076)
.+- -+.++...-++.+.++|+-|.-.++.+.+ .-+|++...-.+..||.+-|+..++-.++.++-+.
T Consensus 81 ~~n------~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 81 INN------TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HTT------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred Hhc------chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 432 34567777789999999999999988874 35788899999999999999999999998887654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.33 E-value=2.5 Score=36.67 Aligned_cols=67 Identities=15% Similarity=-0.031 Sum_probs=43.6
Q ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCch
Q 038364 841 EHYSCMVDLLGKAGY---LDEAWDFIRTM-PFKP-DA-TIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSA 907 (1076)
Q Consensus 841 ~~y~~li~~l~r~G~---l~eA~~l~~~m-~~~p-d~-~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~ 907 (1076)
.+--....++.++.. +++|..++++. ...| +. ..|-.|.-+|.+.|+++.|++.++++++++|+|..
T Consensus 36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q 108 (124)
T d2pqrb1 36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 108 (124)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHH
Confidence 333344445554433 34555555554 1123 32 46677778899999999999999999999998843
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.43 E-value=3.1 Score=36.06 Aligned_cols=68 Identities=4% Similarity=-0.140 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHHHc---CCchHHHHHHHHHhcCCCCCc-hhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 869 KPDATIWGALLGSCRIH---GHLEYAEIASRRLFKLEPCNS-ANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 869 ~pd~~~~~~Ll~a~~~~---g~~e~A~~~~~~l~~l~P~~~-~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
.|...+.-.+..+..++ .+.++|+.+++++++.+|.+. ..+..|+-+|.+.|++++|.+.++++.+..
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 35555666666676655 456789999999999888764 678899999999999999999999996543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=82.84 E-value=7.4 Score=33.66 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=7.6
Q ss_pred CHHHHHHHHHHHHHCC
Q 038364 784 NGKEAILLFHELLETG 799 (1076)
Q Consensus 784 ~~~~Al~l~~~M~~~g 799 (1076)
+.++|+++|++..+.|
T Consensus 110 d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 110 NEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4444555555544443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=80.37 E-value=39 Score=35.56 Aligned_cols=52 Identities=4% Similarity=-0.123 Sum_probs=27.5
Q ss_pred hhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhc
Q 038364 641 SGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQE 697 (1076)
Q Consensus 641 ~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~ 697 (1076)
..+.+.+++++....+.. ..++...-.....+..+.|+.++|.+.+..+-..
T Consensus 80 ~~L~~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~ 131 (450)
T d1qsaa1 80 NELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (450)
T ss_dssp HHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHhccCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 444555665553332211 1223333344556667777777777777666443
|