Citrus Sinensis ID: 038377

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------98

MQEEEDLPDHLRCKRTDGKQWRCNRRVMEDKKLCELHHLQGRHRQNREKVPESLKIQRKHKKIFKVQQRTEIRARKSKKLKRKKKKRVIGESEALDEALKKMKLKRGDLQLELIRMVLKREVEKRKRQKNFDFEDEENCDNSNYSDSDRELTRELPNGLMAISSTNSDNAGTSCAVKIGAEAAAVNRRRFRSKNIEPMPVGTLQVVPYKRDVVSLRRRRRRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTCGCKACSSSQYRDIDYKDLLKANNEVDKVLHFHYLICMLLPIVRQINQDQNVELEIEAKIKGQNPSEVQIQEAEFKYNRLYCCSCKTSIVDYHRSCASCSYTLCLSCCRDILQGSLSGCVRARLCKCPNGRKVCTSGVRILEKKSLRTYKEGYGSTYFDSSAASPSWKAPDGTAGILCPPMEFGGCGDSFLDLRCVFPSCWTKELEINAEQIVGCYELPETIDMSSCCSVCTGMDHEVDGTKQLKVAAIRENSNDNFLFFPTLMDVQGDKLEHFQKHWRKGQPIIVRNVLEVTSDLSWDPIVMFCTYLKNSSLKSENDGGAVEETGCSDWFEVEIGVKQLFLGSLRGPKHADMCNEKLKLKGWLSSRLFQEQFPAHYAEIIRGLPLPEYMDPKTGVLNIATKLPQNFPTSDLGPSVYISYSSGEELAQADSVTKLCYDLCDVVNVLAHTTDVPVSTKQLNNIRELMQGHTGQHQTDSVEVAPEQKMANGMGGKSHSDCENKEVGLCDVLGEEITRHEAGDLNVRDRNSSHDGDYDTDSDPDSLILGCGTNQNSKKSEKRMHFKDHKNNSNYFIKERLAESCGAQWDVFRREDVVHPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVTECIQLIDEIRLLPTDHKAKANKFEVTKMALYAINTAVKEIRELTCAE

ccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHccccccccccccccccccccccccHHcccHHHHccccccccccccccccccccccccccccHHHHHHcccccccHHHcccccEEEccccccccccccHHHHcccccHHHHHHccccccccccccccccccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHccccccccEEEcccccccccccHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHcccccccccccccccccccccccEEEEcccccccccccccccccccccEEEEccccccHHHHHHcHHHHHHHHHcccccccccccccccccccccccccccccccccEEEccccccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHccccEEEEEEcccEEEEcccccHHHcccccccEEEEcccccccHHHHHHHHHHHHcccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcc

cccccccccHccccccccccEEccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccccccccHHHcHHHHHcHcccccHHHHHHHHHHHccccccccHHEEEEEHHHcccccccccccEEcccccccccccccHHHHHHcccccEEccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccHHHHHHHccccHHHHHHHccccccccccHHHHHcccEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccEEccccccEEEEccccccccccHHHHHHHHHHHcccccccccccEEEcccccccccccccccccccccccccccccccccccccccccEccccccccccccHHcccccccEEEEHHcccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHccccccccEEEcccccccccccHHHHHHHHHccccEEEEcHHHccccccccHHHHHHHHHHHccccccccccEEEccccHHccccEEcHHHHHccccccccccccccEEEEcccccccHHHHHHccHHHHHHHHHcccccccccccccEEEEEEcccccccccccccEEEEEccccHccccccccEEEEcHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHcccccccccccccHcccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEcccccEEEcccccccccccccccccccHHcccccccccccHHHHHHHHccccccccccEEEEcHHHHHHHHHHHccccEEEEEccccEEEEEcccccHHHccHHHHHHHHHcccHHcHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccc

mqeeedlpdhlrckrtdgkqwrcnrrvmedKKLCELHHLQgrhrqnrekvpeSLKIQRKHKKIFKVQQRTEIRARKSKKLKRKKKKRVIGESEALDEALKKMKLKRGDLQLELIRMVLKREVEKRkrqknfdfedeencdnsnysdsdrELTRELPNGlmaisstnsdnagtSCAVKIGAEAAAVNRrrfrskniepmpvgtlqvvpykrdvvSLRRRRRrkrchwcrrrgqslikcsscrklffcvdCVKEWYFDTqedvkkacpvcrgtcgckacsssqyrdidYKDLLKANNEVDKVLHFHYLICMLLPIVRQINQDQNVELEIEAKikgqnpsevQIQEAEFKynrlyccscktsivdyhrscascsyTLCLSCCRDILQGSLSGCVrarlckcpngrkvctsgvrilekkSLRTYKegygstyfdssaaspswkapdgtagilcppmefggcgdsfldlrcvfpscwtkeleinaeqivgcyelpetidmssccsvctgmdhevdgtKQLKVAAIREnsndnflffptlmdvqgDKLEHFQKHWRKGQPIIVRNVLEvtsdlswdpIVMFCTYlknsslksendggaveetgcsdwFEVEIGVKQLFlgslrgpkhadmcneklKLKGWLSSRLFQEQFPAHYAEIIrglplpeymdpktgVLNIAtklpqnfptsdlgpsvyisyssgeelaQADSVTKLCYDLCDVVNVlahttdvpvstkQLNNIRELmqghtgqhqtdsvevapeqkmangmggkshsdcenkevglcdvlgeeitrheagdlnvrdrnsshdgdydtdsdpdslilgcgtnqnskksekrmhfkdhknnsnyFIKERLAESCGaqwdvfrredvvhpildqnffldaTHKMRlkeefeiepwtfeqhvgeaviipagcpyqirnLKSCVNVVLDFISPENVTECIQLIDEirllptdhkakanKFEVTKMALYAINTAVKEIRELTCAE

mqeeedlpdhlrckrtdgkqwrcnrrvmedkkLCELhhlqgrhrqnrekvpeslkiqrkhkkifkvqqrteirarkskklkrkkkkrvigesealdealkkmklkrgdlqleLIRMVLKRevekrkrqknfdfedeencdnsnysdsdrELTRELPNGLMAIsstnsdnagTSCAVKIGAEAaavnrrrfrskniepmpvgtlqvvpykrdvvslrrrrrrkrchwcrrrgqslikcsscrkLFFCVDCVKEWYFDTQEDVKKACPVCRGTcgckacsssqyrDIDYKDLLKANNEVDKVLHFHYLICMLLPIVRQINQDQNVELEIEakikgqnpseVQIQEAEFKYNRLYCCSCKTSIVDYHRSCASCSYTLCLSCCRDILQGSLSGCVRARlckcpngrkvctsgvrilekkslrtYKEGYgstyfdssaaspSWKAPDGTAGILCPPMEFGGCGDSFLDLRCVFPSCWTKELEINAEQIVGCYELPETIDMSSCCSVCTGMDHEVDGTKQLKVAAIRENSNDNFLFFPTLMDVQGDKLEHFQKhwrkgqpiiVRNVLEVTSDLSWDPIVMFCTYLKNSSLKSENDGGAVEETGCSDWFEVEIGVKQLFLGSLRGPKHADMCNEKLKLKGWLSSRLFQEQFPAHYAEIIRGLPLPEYMDPKTGVLNIATKLPQNFPTSDLGPSVYISYSSGEELAQADSVTKLCYDLCDVVNVLAhttdvpvsTKQLNNIRELMQGHTGQHQTDSVEVAPEQKMANgmggkshsdceNKEVGLCDVLGEEitrheagdlnvrdrnssHDGDYDtdsdpdslilgcgtnqnskksekrmhfkdhknnsnyFIKERLAESCGAQWDVFRREDVVHPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVTECIQLIDEIRLLPTDHKAKANKFEVTKMALYAINTAVKEIRELTCAE

MQEEEDLPDHLRCKRTDGKQWRCNRRVMEDKKLCELHHLQGRHRQNREKVPESLKIQRKHKKIFKVQQRTEIrarkskklkrkkkkrVIGESEALDEALKKMKLKRGDLQLELIRMVLKREVEKRKRQKNFDFEDEENCDNSNYSDSDRELTRELPNGLMAISSTNSDNAGTSCAVKIGAEAAAVNRRRFRSKNIEPMPVGTLQVVPYKRDVVSLrrrrrrkrchwcrrrGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTCGCKACSSSQYRDIDYKDLLKANNEVDKVLHFHYLICMLLPIVRQINQDQNVELEIEAKIKGQNPSEVQIQEAEFKYNRLYCCSCKTSIVDYHRSCASCSYTLCLSCCRDILQGSLSGCVRARLCKCPNGRKVCTSGVRILEKKSLRTYKEGYGSTYFDSSAASPSWKAPDGTAGILCPPMEFGGCGDSFLDLRCVFPSCWTKELEINAEQIVGCYELPETIDMSSCCSVCTGMDHEVDGTKQLKVAAIRENSNDNFLFFPTLMDVQGDKLEHFQKHWRKGQPIIVRNVLEVTSDLSWDPIVMFCTYLKNSSLKSENDGGAVEETGCSDWFEVEIGVKQLFLGSLRGPKHADMCNEKLKLKGWLSSRLFQEQFPAHYAEIIRGLPLPEYMDPKTGVLNIATKLPQNFPTSDLGPSVYISYSSGEELAQADSVTKLCYDLCDVVNVLAHTTDVPVSTKQLNNIRELMQGHTGQHQTDSVEVAPEQKMANGMGGKSHSDCENKEVGLCDVLGEEITRHEAGDLNVRDRNsshdgdydtdsdpdsLILGCGTNQNSKKSEKRMHFKDHKNNSNYFIKERLAESCGAQWDVFRREDVVHPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVTECIQLIDEIRLLPTDHKAKANKFEVTKMALYAINTAVKEIRELTCAE

*******************QWRCNRRVMEDKKLCELH***********************************************************************LQLELIRMVL*******************************************************CAVKIGAEAAAVNRRRFRSKNIEPMPVGTLQVVPYKRDVVSLRRRRRRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTCGCKACSSSQYRDIDYKDLLKANNEVDKVLHFHYLICMLLPIVRQINQDQNVELEIEAKIK******VQIQEAEFKYNRLYCCSCKTSIVDYHRSCASCSYTLCLSCCRDILQGSLSGCVRARLCKCPNGRKVCTSGVRILEKKSLRTYKEGYGSTYFDS******WKAPDGTAGILCPPMEFGGCGDSFLDLRCVFPSCWTKELEINAEQIVGCYELPETIDMSSCCSVCTGMDHEVDGTKQLKVAAIRENSNDNFLFFPTLMDVQGDKLEHFQKHWRKGQPIIVRNVLEVTSDLSWDPIVMFCTYLKNS********GAVEETGCSDWFEVEIGVKQLFLGSLRGPKHADMCNEKLKLKGWLSSRLFQEQFPAHYAEIIRGLPLPEYMDPKTGVLNIATKLPQNFPTSDLGPSVYISYSSGEELAQADSVTKLCYDLCDVVNVLAHTTDVPVSTKQL*******************************************VGLCDVLGEE*********************************************************NYFIKERLAESCGAQWDVFRREDVVHPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVTECIQLIDEIRLLPTDHKAKANKFEVTKMALYAINTAVKEIREL****

******L*********DGKQWRCNRRVMEDKKLC*********************************************************************************************************************************************************************VGTLQVVPYKRDVVSLRRRRRRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTCGCKACSSSQYRDI*******ANNEVDKVLHFHYLICMLLPIVRQINQDQNV***************VQIQEAEFKYNRLYCCSCKTSIVDYHRSCASCSYTLCLSCCRDILQG***********KCPNGRKV******************************SPSWKAPDGTAGILCP*********SFLDLRCVFPS*W*************************************************ENSNDNFLFFPTLMDVQGDKLEHFQKHWRKGQPIIVRNVLEVTSDLSWDPIVMFCTYL************AVEETGCSDWFEVEIGVKQLFLGSLRGPKHADMCNEKLKLKGWLSSRLFQEQFPAHYAEIIRGLPLPEYMDPKTGVLNIATKLPQNFPTSDLGPSVYISYSSGEELAQADSVTKLCYDLCDVVNVLAHTTDVPV*TK****IRELMQGHTGQH******************************************************************PDSLILGCG*N*NSKKSEKRMHFKDHKNNSNYFIKERLAESCGAQWDVFRREDVVHPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVTECIQLIDEIRLLPTDHKAKANKFEVTKMALYAINTAVKEIRELT***

********DHLRCKRTDGKQWRCNRRVMEDKKLCELHHLQG***********SLKIQRKHKKIFKVQQRTEIRA***************GESEALDEALKKMKLKRGDLQLELIRMVLKREVEKRKRQKNFDFEDEENCDNSNYSDSDRELTRELPNGLMAISSTNSDNAGTSCAVKIGAEAAAVNRRRFRSKNIEPMPVGTLQVVPYKRDVVSLRRRRRRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTCGCKACSSSQYRDIDYKDLLKANNEVDKVLHFHYLICMLLPIVRQINQDQNVELEIEAKIKGQNPSEVQIQEAEFKYNRLYCCSCKTSIVDYHRSCASCSYTLCLSCCRDILQGSLSGCVRARLCKCPNGRKVCTSGVRILEKKSLRTYKEGYGSTYFDSSAASPSWKAPDGTAGILCPPMEFGGCGDSFLDLRCVFPSCWTKELEINAEQIVGCYELPETIDMSSCCSVCTGMDHEVDGTKQLKVAAIRENSNDNFLFFPTLMDVQGDKLEHFQKHWRKGQPIIVRNVLEVTSDLSWDPIVMFCTYLKNSS**********EETGCSDWFEVEIGVKQLFLGSLRGPKHADMCNEKLKLKGWLSSRLFQEQFPAHYAEIIRGLPLPEYMDPKTGVLNIATKLPQNFPTSDLGPSVYISYSSGEELAQADSVTKLCYDLCDVVNVLAHTTDVPVSTKQLNNIRELMQG**********EVAPEQKM***********CENKEVGLCDVLGEEITRHEAGDLNVRDR***********SDPDSLILGCGTNQ*********HFKDHKNNSNYFIKERLAESCGAQWDVFRREDVVHPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVTECIQLIDEIRLLPTDHKAKANKFEVTKMALYAINTAVKEIRELTCAE

*****D*PDHLRCKRTDGKQWRCNRRVMEDKKLCELHHLQGRHRQNR************************************************DEAL***KLKRGDLQLELIRMVLKREVE****************************T*********************C************************************************RCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTCGCKACSSSQYRDIDYKDLLKANNEVDKVLHFHYLICMLLPIVRQINQDQNVELEIEAKIKGQNPSEVQIQEAEFKYNRLYCCSCKTSIVDYHRSCASCSYTLCLSCCRDILQGSLS****ARLCK************************************ASPSWKAPDGTAGILCPPMEFGGCGDSFLDLRCVFPSCWTKELEINAEQIVGCYELPET****SCCSVC**********K*LKV*AIRENSNDNFLFFPTLMDVQGDKLEHFQKHWRKGQPIIVRNVLEVTSDLSWDPIVMFCTYLKNSSLKSENDGGAVEETGCSDWFEVEIGVKQLFLGSLRGPKHADMCNEKLKLKGWLSSRLFQEQFPAHYAEIIRGLPLPEYMDPKTGVLNIATKLPQNFPTSDLGPSVYISYSSGEELAQADSVTKLCYDLCDVVNVLAHTTDVPVSTKQLNNIRELMQGHTGQHQTDSVEVAPEQKMANGMGGKSHSDCENKEVGLCDVLGEEITRHEAGDLNVRDRNSSHDGDYDTDSDPDSLILGCGTNQNSKKSEKRMHFKDHKNNSNYFIKERLAESCGAQWDVFRREDVVHPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVTECIQLIDEIRLLPTDHKAKANKFEVTKMALYAINTAVKEIRELTC**

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		979	2.2.26 [Sep-21-2011]
Q7LBC6		1761	Lysine-specific demethyla	yes	no	0.094	0.052	0.411	8e-20
Q6ZPY7		1562	Lysine-specific demethyla	no	no	0.094	0.059	0.401	6e-19
Q5ZIX8		1325	Lysine-specific demethyla	no	no	0.168	0.124	0.296	3e-18
Q9Y4C1		1321	Lysine-specific demethyla	no	no	0.088	0.065	0.383	5e-18
Q6PCM1		1323	Lysine-specific demethyla	no	no	0.090	0.067	0.383	6e-18
Q63679		1214	Lysine-specific demethyla	no	no	0.092	0.074	0.376	1e-17
Q6IRB8		1331	Lysine-specific demethyla	N/A	no	0.100	0.073	0.383	2e-17
Q5HZN1		1334	Lysine-specific demethyla	N/A	no	0.100	0.073	0.373	2e-16
Q15652		2540	Probable JmjC domain-cont	no	no	0.129	0.05	0.284	6e-13
Q61645		1182	Protein hairless OS=Mus m	no	no	0.119	0.098	0.308	6e-13

>sp\|Q7LBC6\|KDM3B_HUMAN Lysine-specific demethylase 3B OS=Homo sapiens GN=KDM3B PE=1 SV=2	Back alignment and function desciption

 Score =  100 bits (248), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 66/107 (61%)

Query: 867  PILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFI 926
            PI DQ+++LD T + RL EE+ ++ W   Q +G+AV IPAG P+Q+ NL SC+ V  DF+
Sbjct: 1646 PIHDQSWYLDQTLRKRLYEEYGVQGWAIVQFLGDAVFIPAGAPHQVHNLYSCIKVAEDFV 1705

Query: 927  SPENVTECIQLIDEIRLLPTDHKAKANKFEVTKMALYAINTAVKEIR 973
            SPE+V  C +L  E R L   H    +K +V  +  +A+  AV  ++
Sbjct: 1706 SPEHVKHCFRLTQEFRHLSNTHTNHEDKLQVKNIIYHAVKDAVGTLK 1752

Histone demethylase that specifically demethylates 'Lys-9' of histone H3, thereby playing a central role in histone code. Demethylation of Lys residue generates formaldehyde and succinate. May have tumor suppressor activity.
Homo sapiens (taxid: 9606)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -

>sp\|Q6ZPY7\|KDM3B_MOUSE Lysine-specific demethylase 3B OS=Mus musculus GN=Kdm3b PE=1 SV=2	Back alignment and function description

>sp\|Q5ZIX8\|KDM3A_CHICK Lysine-specific demethylase 3A OS=Gallus gallus GN=KDM3A PE=2 SV=1	Back alignment and function description

>sp\|Q9Y4C1\|KDM3A_HUMAN Lysine-specific demethylase 3A OS=Homo sapiens GN=KDM3A PE=1 SV=4	Back alignment and function description

>sp\|Q6PCM1\|KDM3A_MOUSE Lysine-specific demethylase 3A OS=Mus musculus GN=Kdm3a PE=1 SV=1	Back alignment and function description

>sp\|Q63679\|KDM3A_RAT Lysine-specific demethylase 3A OS=Rattus norvegicus GN=Kdm3a PE=2 SV=1	Back alignment and function description

>sp\|Q6IRB8\|KD3AA_XENLA Lysine-specific demethylase 3A-A OS=Xenopus laevis GN=kdm3a-a PE=2 SV=1	Back alignment and function description

>sp\|Q5HZN1\|KD3AB_XENLA Lysine-specific demethylase 3A-B OS=Xenopus laevis GN=kdm3a-b PE=2 SV=1	Back alignment and function description

>sp\|Q15652\|JHD2C_HUMAN Probable JmjC domain-containing histone demethylation protein 2C OS=Homo sapiens GN=JMJD1C PE=1 SV=2	Back alignment and function description

>sp\|Q61645\|HAIR_MOUSE Protein hairless OS=Mus musculus GN=Hr PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		979
255567441		1033	conserved hypothetical protein [Ricinus	0.972	0.921	0.584	0.0
224116248		893	predicted protein [Populus trichocarpa]	0.875	0.959	0.544	0.0
449479629		1005	PREDICTED: uncharacterized LOC101212609	0.979	0.954	0.492	0.0
449433904		1005	PREDICTED: uncharacterized protein LOC10	0.979	0.954	0.492	0.0
356519532		1030	PREDICTED: uncharacterized protein LOC10	0.968	0.920	0.483	0.0
356527941		1047	PREDICTED: uncharacterized protein LOC10	0.973	0.910	0.479	0.0
356557656		951	PREDICTED: uncharacterized protein LOC10	0.909	0.935	0.460	0.0
356546682		922	PREDICTED: uncharacterized protein LOC10	0.891	0.946	0.445	0.0
391224311		936	unnamed protein product [Arabidopsis hal	0.906	0.947	0.442	0.0
312162752		936	unknown [Arabidopsis lyrata]	0.906	0.947	0.438	0.0

>gi\|255567441\|ref\|XP_002524700.1\| conserved hypothetical protein [Ricinus communis] gi\|223536061\|gb\|EEF37719.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score = 1135 bits (2937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 614/1051 (58%), Positives = 746/1051 (70%), Gaps = 99/1051 (9%)

Query: 5    EDLPDHLRCKRTDGKQWRCNRRVMEDKKLCELHHLQGRHRQNREKVPESLKIQRKHKKIF 64
            E LP+HLRCKRTDG+QWRCNRRVM+DKKLCE+HHLQGRHRQ + KVPESLK+QRK+ K  
Sbjct: 6    EPLPEHLRCKRTDGRQWRCNRRVMDDKKLCEIHHLQGRHRQYKRKVPESLKLQRKYNKKL 65

Query: 65   K-----VQQRTEIRARKSKKLKRKKKKRVIGESEALDEALKKMKLKRGDLQLELIRMVLK 119
            K     +    EIRA+K ++  R  K     + +   +++      RG+LQLELIRMVLK
Sbjct: 66   KANADSISDNLEIRAQKEERFSRLVKLG---KLKKRKKSITGGGESRGNLQLELIRMVLK 122

Query: 120  REVEKRKRQKNFDF--------------EDEENCDNSNYSDSDR-ELTRELPNGLMAISS 164
            REVEKRK++K                   D +N D  + S+S+  EL R+LPNGLMAIS 
Sbjct: 123  REVEKRKKKKKKKIKNKNKKVVAVEEINSDNDNIDVDSSSNSEEGELMRDLPNGLMAISP 182

Query: 165  T--NSDNAG----TSCAVKIGAEAA---AVNRRRFRSKNIEPMPVGTLQVVPYKRDVVSL 215
               N  NA     T C +KIG  AA   A  RR FRSKNIEPMP+GTLQVVP+K+D+V L
Sbjct: 183  AKHNLSNAASCSTTPCDIKIGGAAADSSAFTRRCFRSKNIEPMPIGTLQVVPFKKDMVRL 242

Query: 216  RRRRRRKRCHWCRRRG-QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTCGC 274
            R+ +R+K CH+CRR G ++LI+CSSCRK FFC+DC+K+ YF+ QE+VK AC VCRGTC C
Sbjct: 243  RKGKRKK-CHFCRRSGLKTLIRCSSCRKQFFCMDCIKDQYFNMQEEVKIACSVCRGTCSC 301

Query: 275  KACSSSQYRDIDYKDLLKANNEVDKVLHFHYLICMLLPIVRQINQDQNVELEIEAKIKGQ 334
            KACS+ Q R+I+ K   K  ++V+KVLHFHYLICMLLP++++INQDQ++ELEIEAKI+GQ
Sbjct: 302  KACSAIQCRNIECKGFSKDKSKVNKVLHFHYLICMLLPVLKEINQDQSIELEIEAKIRGQ 361

Query: 335  NPSEVQIQEAEFKYNRLYCC-SCKTSIVDYHRSCASCSYTLCLSCCRDILQGSLSGCVRA 393
             PS++QIQ+AE   N+ +CC +CKTSI+D+HRSC SCSY LCLSCC+DI QGSL   V+ 
Sbjct: 362  KPSDLQIQQAEVGCNKRWCCDNCKTSIMDFHRSCPSCSYNLCLSCCQDIYQGSLLRSVKG 421

Query: 394  RLCKCPNGRKVCTSGVRILEKKSLRTYKEGYGSTYFDSSAASPSWKAPDGTAGILCPPME 453
             LCKCPN +K C SG +  E KS+ TYK+  G  Y D S +  S KAPDG  GI CPP E
Sbjct: 422  LLCKCPNRKKACLSGKQFSEMKSVCTYKQNNGIKYSDFSMSLLSLKAPDGNGGIPCPPTE 481

Query: 454  FGGCGDSFLDLRCVFPSCWTKELEINAEQIVGCYELPETIDMSSCCSVCTGMDHEVDGTK 513
            FGGCG S LDL C+FPS WTKELEI+AE+I+GCYELPET+D+ S CS+C GMD EV+ + 
Sbjct: 482  FGGCGKSLLDLCCIFPSSWTKELEISAEEIIGCYELPETVDVFSRCSLCIGMDCEVNESL 541

Query: 514  QLKVAAIRENSNDNFLFFPTLMDVQGDKLEHFQKHWRKGQPIIVRNVLEVTSDLSWDPIV 573
            QL+ AA RE SNDNFL++PT++D+  D LEHFQKHW KGQP+IVRNVL+ TSDLSWDPIV
Sbjct: 542  QLQEAATREESNDNFLYYPTVVDIHSDNLEHFQKHWGKGQPVIVRNVLQGTSDLSWDPIV 601

Query: 574  MFCTYLKNSSLKSENDGGAVEETGCSDWFEVEIGVKQLFLGSLRGPKHADMCNEKLKLKG 633
            MFCTYLKN++ KSEN+  A     C DWFEVEIG+KQLF+GS +GP HA+M +E+LKLKG
Sbjct: 602  MFCTYLKNNAAKSENEQVA----DCLDWFEVEIGIKQLFMGSFKGPTHANMWHERLKLKG 657

Query: 634  WLSSRLFQEQFPAHYAEIIRGLPLPEYMDPKTGVLNIATKLPQNFPTSDLGPSVYISYSS 693
            WLSS LFQE FPAHYAEI+  LPLPEYMDP +GVLNIA +LPQ     DLGP VYISY S
Sbjct: 658  WLSSHLFQEHFPAHYAEILHALPLPEYMDPISGVLNIAAELPQEIMKPDLGPCVYISYGS 717

Query: 694  GEELAQADSVTKLCYDLCDVVNVLAHTTDVPVSTKQLNNIRELMQGHTGQHQTDSVEVAP 753
            GE L QADSVTKL Y+  DVVN+LAHT D+PVST+QLN IR+LM+ H  Q          
Sbjct: 718  GENLVQADSVTKLRYNSYDVVNILAHTADIPVSTEQLNYIRKLMKKHKEQ---------- 767

Query: 754  EQKMANGMGGKSHSDCENKE-VGLCDVLGEEI--------------TRHEAGDLNVRDRN 798
                 N + G +  D +N E VGL D++ EE+                HEA     ++R+
Sbjct: 768  -----NEVSGAAPVDVQNIEDVGLHDMITEEMHLHKKVARVSWFSAASHEAHASRFKNRD 822

Query: 799  SSHDGDYDTDSDPDSLI------LGCGTNQNSKKSEKRMHFKDHKNNSNYFIKERLAESC 852
               D +YD+DSD D+           G  +N + SE          +S++  K +  ESC
Sbjct: 823  LFLDREYDSDSDSDTDTDTEVSKFFFGPVKNFRTSENHKFCGKLAESSHHCGKRKTVESC 882

Query: 853  GAQWDVFRREDVV------------------------HPILDQNFFLDATHKMRLKEEFE 888
            GAQWDVFRR+DV                         H ILDQNFFLD THK+RLKEEF+
Sbjct: 883  GAQWDVFRRQDVPKLIEYLRRHSNEFIQTHGFRKPVGHHILDQNFFLDTTHKLRLKEEFK 942

Query: 889  IEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVTECIQLIDEIRLLPTDH 948
            IEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDF+SPENVTECIQL+DE+RLLP +H
Sbjct: 943  IEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFVSPENVTECIQLVDELRLLPENH 1002

Query: 949  KAKANKFEVTKMALYAINTAVKEIRELTCAE 979
            KAK +  EV KMALY+I+ AVKEIRELTCAE
Sbjct: 1003 KAKMDSLEVKKMALYSISRAVKEIRELTCAE 1033

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224116248\|ref\|XP_002317249.1\| predicted protein [Populus trichocarpa] gi\|222860314\|gb\|EEE97861.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449479629\|ref\|XP_004155657.1\| PREDICTED: uncharacterized LOC101212609 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449433904\|ref\|XP_004134736.1\| PREDICTED: uncharacterized protein LOC101212609 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356519532\|ref\|XP_003528426.1\| PREDICTED: uncharacterized protein LOC100787798 [Glycine max]	Back alignment and taxonomy information

>gi\|356527941\|ref\|XP_003532564.1\| PREDICTED: uncharacterized protein LOC100810673 [Glycine max]	Back alignment and taxonomy information

>gi\|356557656\|ref\|XP_003547131.1\| PREDICTED: uncharacterized protein LOC100802129 [Glycine max]	Back alignment and taxonomy information

>gi\|356546682\|ref\|XP_003541752.1\| PREDICTED: uncharacterized protein LOC100799234 [Glycine max]	Back alignment and taxonomy information

>gi\|391224311\|emb\|CCI61488.1\| unnamed protein product [Arabidopsis halleri]	Back alignment and taxonomy information

>gi\|312162752\|gb\|ADQ37367.1\| unknown [Arabidopsis lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		979
TAIR\|locus:2141221		927	B160 "AT4G21430" [Arabidopsis	0.409	0.432	0.430	2.6e-208
TAIR\|locus:2027109		883	AT1G62310 "AT1G62310" [Arabido	0.471	0.523	0.383	9.3e-119
TAIR\|locus:2125221		840	AT4G00990 "AT4G00990" [Arabido	0.623	0.726	0.325	6.4e-108
TAIR\|locus:2036014		944	AT1G09060 "AT1G09060" [Arabido	0.389	0.403	0.275	1.1e-98
TAIR\|locus:2008875		875	AT1G11950 "AT1G11950" [Arabido	0.445	0.498	0.326	2.2e-94
FB\|FBgn0037703		854	JHDM2 "JmjC domain-containing	0.109	0.125	0.411	1.8e-33
UNIPROTKB\|Q7LBC6		1761	KDM3B "Lysine-specific demethy	0.109	0.060	0.411	2.2e-31
UNIPROTKB\|E1BE97		1759	LOC100848816 "Uncharacterized	0.109	0.060	0.411	2.8e-31
UNIPROTKB\|F1RH75		1766	KDM3B "Uncharacterized protein	0.109	0.060	0.411	2.9e-31
MGI\|MGI:1923356		1562	Kdm3b "KDM3B lysine (K)-specif	0.109	0.068	0.401	6.5e-31

TAIR\|locus:2141221 B160 "AT4G21430" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 828 (296.5 bits), Expect = 2.6e-208, Sum P(4) = 2.6e-208
 Identities = 179/416 (43%), Positives = 250/416 (60%)

Query:     1 MQEEEDLPDHLRCKRTDGKQWRCNRRVMEDKKLCELHHLQGRHRQNREKVPESLKIQRKH 60
             M E E +PD  RC R+DGKQWRC RR +E KK+CE HH Q   +++++KV ES K+ R  
Sbjct:     1 MSENEIVPDEFRCNRSDGKQWRCKRRALEGKKMCESHHSQQSLKRSKQKVAESSKLVRSR 60

Query:    61 K----KIFKVQQRTEIXXXXXXXXXXXXXXXVIGESEALDEALKKMKLKRGDLQLELIRM 116
             +    ++   +                    V+GE+EA+DEA+KKMKLKRGDLQL+LIRM
Sbjct:    61 RGGGDEVASSEIEPNESRIRSKRLGKSKRKRVMGEAEAMDEAVKKMKLKRGDLQLDLIRM 120

Query:   117 VLKREVEKRKRQKNFDFEDEENCDNSNYSDSDRELTRELPNGLMAIS--STNSDNAGTSC 174
             VLKREVEKRKR  N + + + N   S +     ELTR LPNG+MAIS  S  + N  + C
Sbjct:   121 VLKREVEKRKRLPNSNNKKKSNGGFSEFVGE--ELTRVLPNGIMAISPPSPTTSNVSSPC 178

Query:   175 AVKIGAEAAAVNRRRFRSKNIEPMPVGTLQVVPYKRDVVSLXXXXXXXXXXXXXXXGQSL 234
              VK+G E  ++ +RRFRSKNIEP+P+G +QVVP+K D+V+                   L
Sbjct:   179 DVKVGEEPISMIKRRFRSKNIEPLPIGKMQVVPFKGDLVNGRKEKKMRCHWCGTRGFGDL 238

Query:   235 IKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTCGCKACSSSQYRDIDYKDLLKAN 294
             I C SC + FFC+DC+++    ++E+V+K CPVCRG+C CK CS +     + KD     
Sbjct:   239 ISCLSCEREFFCIDCIEKRNKGSKEEVEKKCPVCRGSCRCKVCSVTNSGVTECKDSQSVR 298

Query:   295 NEVDKVLHFHYLICMLLPIVRQINQDQNVELEIEAKIKGQNPSEVQIQEAEFKYN-RLYC 353
             +++D+VLH HY +CMLLP++++IN +  VE+E +A+ K  NP+E QI  +E   + R  C
Sbjct:   299 SDIDRVLHLHYAVCMLLPVLKEINAEHKVEVENDAEKKEGNPAEPQIHSSELTSDDRQPC 358

Query:   354 CSCKT-SIVDYHRSCASCSYTLCLSCCRDILQGSLSGCVRARLCKCPNG---RKVC 405
              + +  ++VD  R C   S  L L+  +D  Q SLS  V +   KC NG    KVC
Sbjct:   359 SNGRDFAVVDLQRMCTRSSSVLRLNSDQDQSQESLSRKVGS--VKCSNGIKSPKVC 412

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR\|locus:2027109 AT1G62310 "AT1G62310" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2125221 AT4G00990 "AT4G00990" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2036014 AT1G09060 "AT1G09060" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2008875 AT1G11950 "AT1G11950" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

FB\|FBgn0037703 JHDM2 "JmjC domain-containing histone demethylase 2" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|Q7LBC6 KDM3B "Lysine-specific demethylase 3B" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BE97 LOC100848816 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RH75 KDM3B "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

MGI\|MGI:1923356 Kdm3b "KDM3B lysine (K)-specific demethylase 3B" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		979
pfam08879		46	pfam08879, WRC, WRC	2e-16
pfam02373		114	pfam02373, JmjC, JmjC domain, hydroxylase	1e-08
pfam10497		105	pfam10497, zf-4CXXC_R1, Zinc-finger domain of mono	5e-04

>gnl\|CDD\|192171 pfam08879, WRC, WRC	Back alignment and domain information

 Score = 73.5 bits (181), Expect = 2e-16
 Identities = 24/45 (53%), Positives = 31/45 (68%)

Query: 7  LPDHLRCKRTDGKQWRCNRRVMEDKKLCELHHLQGRHRQNREKVP 51
           P+  RC+RTDGK+WRC+RRV+  KKLCE H  +GR R  + K  
Sbjct: 1  DPEPGRCRRTDGKKWRCSRRVLPGKKLCERHLHRGRSRSRKSKED 45

The WRC domain, named after the conserved Trp-Arg-Cys motif, contains two distinctive features: a putative nuclear localisation signal and a zinc-finger motif (C3H). It is suggested that the WRC domain functions in DNA binding. Length = 46

>gnl\|CDD\|202224 pfam02373, JmjC, JmjC domain, hydroxylase	Back alignment and domain information

>gnl\|CDD\|220784 pfam10497, zf-4CXXC_R1, Zinc-finger domain of monoamine-oxidase A repressor R1	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		979
KOG1356		889	consensus Putative transcription factor 5qNCA, con	100.0
PF08879		46	WRC: WRC; InterPro: IPR014977 WRC is named after t	99.62
PF10497		105	zf-4CXXC_R1: Zinc-finger domain of monoamine-oxida	99.45
PF02373		114	JmjC: JmjC domain, hydroxylase; InterPro: IPR01312	99.21
PF13621		251	Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU	98.69
smart00558		57	JmjC A domain family that is part of the cupin met	96.75
KOG2131		427	consensus Uncharacterized conserved protein, conta	95.24
cd02340		43	ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre	94.55
cd02335		49	ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present	93.47
cd02249		46	ZZ Zinc finger, ZZ type. Zinc finger present in dy	93.34
cd02339		45	ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre	92.51
COG1917		131	Uncharacterized conserved protein, contains double	92.31
PF07883		71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	92.1
cd02344		45	ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present	90.95
KOG2130		407	consensus Phosphatidylserine-specific receptor Ptd	90.26
PF00569		46	ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc	90.16
cd02345		49	ZZ_dah Zinc finger, ZZ type. Zinc finger present i	89.92
cd02341		48	ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present	89.09
COG0662		127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	88.72
smart00291		44	ZnF_ZZ Zinc-binding domain, present in Dystrophin,	88.71
cd02338		49	ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre	85.56
TIGR03214		260	ura-cupin putative allantoin catabolism protein. T	85.43
PHA02926		242	zinc finger-like protein; Provisional	84.66
cd02334		49	ZZ_dystrophin Zinc finger, ZZ type. Zinc finger pr	84.48
cd02337		41	ZZ_CBP Zinc finger, ZZ type. Zinc finger present i	84.44
PF13639		44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	84.04
KOG1356		889	consensus Putative transcription factor 5qNCA, con	81.37
cd02343		48	ZZ_EF Zinc finger, ZZ type. Zinc finger present in	80.81
KOG3899		381	consensus Uncharacterized conserved protein [Funct	80.29

>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]	Back alignment and domain information

Probab=100.00  E-value=7e-174  Score=1494.70  Aligned_cols=632  Identities=30%  Similarity=0.520  Sum_probs=545.1

Q ss_pred             ccCCcccccccCC-CceEecCCCCCcccchhhhhhhccCc-HHHHHhhCCCCCCCcccccccCCCCCCchhhhhh-hccc
Q 038377          219 RRRKRCHWCRRRG-QSLIKCSSCRKLFFCVDCVKEWYFDT-QEDVKKACPVCRGTCGCKACSSSQYRDIDYKDLL-KANN  295 (979)
Q Consensus       219 ~~~~~CHQC~r~d-~~vV~C~~C~rk~fC~~CI~~wYp~~-~edi~~~CP~CRg~CNCk~Clr~~~~~~~~K~~~-~~~~  295 (979)
                      |.+.|||||.+.+ ..+-+|++|+-+ ||++|++.|||.+ .++++.+|+||+..|||.+|+...+..++.+-.- .-.+
T Consensus       227 g~~~mC~~C~~tlfn~hw~C~~C~~~-~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~~~q~h~~~~Lm~Tq~i~~~al~~  305 (889)
T KOG1356|consen  227 GIREMCDRCETTLFNIHWRCPRCGFG-VCLDCYRKWYPRLSKEEVAEKCEFSWLKCNKGQCHALSELMPTQIIPGSALLD  305 (889)
T ss_pred             CcchhhhhhcccccceeEEccccCCe-eeecchhhccccchHhHhhhhhhHHHHhcCCccccchhhcccccccchhhhhh
Confidence            7788999999998 468999999988 9999999999997 7999999999999999999999999765432211 1134


Q ss_pred             hHHHHHHHH--HHHHHHhhHhhhchhhhhhhHHHHHHhhCCCCCcccchhhhcccCccc-cCCCCcccccccccCccCcc
Q 038377          296 EVDKVLHFH--YLICMLLPIVRQINQDQNVELEIEAKIKGQNPSEVQIQEAEFKYNRLY-CCSCKTSIVDYHRSCASCSY  372 (979)
Q Consensus       296 ~~dk~~h~~--YLL~~LLP~Lkqi~~EQ~~E~EiEAkIqG~~~sei~i~~A~~~~DERv-CDnCkTSIvD~HRSC~~Csy  372 (979)
                      ..+++.++.  |+|..++|+|+.++.+|-.+.+.||+|||..+++ ..+.+...++|++ ||+|.|||.|+||+||+|||
T Consensus       306 ~~~~~h~~r~k~~I~~~cpcl~~~~~~~~~~~~~e~~vq~~~~~~-~~~~~~~~~~e~~~~~~~~~si~~l~r~cP~~s~  384 (889)
T KOG1356|consen  306 LSDRVHAVREKFGIKAHCPCLKKQNKQQPLDAETEASVQGTEPTS-KPPVTQANPEEPLYCDHCATSIGDLKRSCPDSSY  384 (889)
T ss_pred             HHHHHHHHHHHhhHHhhChhHHhhhhhccccHHHHHHHhcCCCCC-CccccccCcCCCccccccccchhhccccCCCccc
Confidence            556788887  9999999999999999999999999999999998 5666777779999 99999999999999999999


Q ss_pred             cchhhhHHHhhcCCCCccccccccccCCCCcccccCccccccccccccccCCCCccCCCCCCCCCccCCCCCCcccCCCC
Q 038377          373 TLCLSCCRDILQGSLSGCVRARLCKCPNGRKVCTSGVRILEKKSLRTYKEGYGSTYFDSSAASPSWKAPDGTAGILCPPM  452 (979)
Q Consensus       373 DLCL~CC~ELR~G~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~W~a~n~dGsI~Cpp~  452 (979)
                      ++||.||.+||.|.+.-..+ ..+.+-+++..|.+|..-++...        +... ....  +.   +|.+|+|.|-|.
T Consensus       385 ~~~l~~~~~i~~g~l~~~~e-~~~~~~~r~~~~~~g~~~~~~~~--------~s~~-~~~~--~~---~~~ng~~r~l~~  449 (889)
T KOG1356|consen  385 AICLPWLADLRRGDLKEKEE-CELMLRSRGVKYEHGPDPIEPSL--------SSVS-VDEP--SS---ANENGSLRDLLL  449 (889)
T ss_pred             cccchHHHHhhcCCcccchh-HHHHHHHHHHHhhcCcccccccc--------CCCC-CCCC--cc---cccccchhhccc
Confidence            99999999999996665433 23445556666777653333221        0000 1111  11   367799999999


Q ss_pred             CCCCCCCccccccccCCCCchHHHHHHHHHHHhccCCcccccCCCCccCccCCCCCcccchhhHHHhhhcCCCCCeeecc
Q 038377          453 EFGGCGDSFLDLRCVFPSCWTKELEINAEQIVGCYELPETIDMSSCCSVCTGMDHEVDGTKQLKVAAIRENSNDNFLFFP  532 (979)
Q Consensus       453 e~GGCG~~~L~Lr~ifp~~wi~~L~~~aee~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~rkaA~Reds~DN~LYcP  532 (979)
                      ..+||+...|.|+|+||..|.+.|+.+||.-+..|-+...      +..|.   +..+..+.++++|.|+.+.|||||||
T Consensus       450 ~~~g~~~~~l~lkr~lpn~~~s~i~~~vE~k~~~~~~~~~------l~~~~---~~~~~~~~~~s~~~~~~~cdn~Ll~l  520 (889)
T KOG1356|consen  450 SLAGCLDRGLKLKRILPNILDSIIASVVENKLTSKLSKPP------LRLCR---SSQDGSGLLLSAASHSWLCDNRLLSL  520 (889)
T ss_pred             ccCccchhhhhhhhcCchHHHHHHHHHHHhhcccccCCch------hhcCc---cccccccCccccCCCCcCCCCceecC
Confidence            9999999999999999999999999999999988655443      33342   23344567899999999999999999


Q ss_pred             CccccccCcHHHHHHHHhcCCCEEEEeccccCCCCCCcchhhhhhhhhcccccCCCCCCceEEeeCCCCceEeechhccc
Q 038377          533 TLMDVQGDKLEHFQKHWRKGQPIIVRNVLEVTSDLSWDPIVMFCTYLKNSSLKSENDGGAVEETGCSDWFEVEIGVKQLF  612 (979)
Q Consensus       533 ~~~di~~~~l~hFQ~hW~kGePVIVr~Vl~~~s~lsWeP~~mwr~~~e~~~~~~~~~~~~VkaIDCld~~evei~v~qFF  612 (979)
                      .+.+++.+||.|||+||++|||||||||++.+++++|+||+|||+|.++...=..-.+.+|.++||++      ++.+||
T Consensus       521 ~~d~~~~~n~~~FQEhWkqGqPViVs~V~~~l~g~lW~P~a~~~~~g~q~~~l~n~~~~~i~s~d~~~------~fwegF  594 (889)
T KOG1356|consen  521 KVDPLNQNNLKHFQEHWKQGQPVIVSGVHKKLNGLLWKPEALSRAFGDQVVDLSNCNNSQIISNDCVD------NFWEGF  594 (889)
T ss_pred             ccCccchhHHHHHHHHHhcCCcEEehHhhhhccccccchHHHHHHhccchhhhhcCCCCCccccchhh------hHHHhh
Confidence            99889999999999999999999999999999999999999999998865432233345688888888      789999


Q ss_pred             ccccCCCCCCCCCccceeecCCCChhhHHHhchhhHHHHHhcCCCCCccCCCCccccccccCCCCCCCCCCCCcchhccc
Q 038377          613 LGSLRGPKHADMCNEKLKLKGWLSSRLFQEQFPAHYAEIIRGLPLPEYMDPKTGVLNIATKLPQNFPTSDLGPSVYISYS  692 (979)
Q Consensus       613 ~Gy~~gr~~~n~wp~mLKLKDWPps~~Fee~LP~h~~eFi~aLP~~EYT~Pr~G~LNLAskLP~~~lkPDLGPK~YIAYG  692 (979)
                      .||++|+++++|||+|||||||||+++|+++||+||+|||++|||||||| ++|+||||++||.+|++||||||||||||
T Consensus       595 e~~~kr~~~~~g~p~vLKLKDWpp~~~Fkd~lP~r~eell~sLPlpEYt~-r~G~LNlAs~LP~~fv~PDLGPk~y~AYG  673 (889)
T KOG1356|consen  595 EGYSKRLKSENGWPEVLKLKDWPPGEDFKDMLPRRFEELLASLPLPEYTD-RDGKLNLASKLPEGFVRPDLGPKLYNAYG  673 (889)
T ss_pred             cccccCcccccCCeeEEeecCCCchHhHhhhhhHHHHHHHHcCCchhhhc-CCCccchHhhCcccccCCCCCchhhhhcc
Confidence            99999999999999999999999999999999999999999999999999 89999999999999999999999999999


Q ss_pred             ccccccCCCCcceeeeeccchhhhhhccCccCCChhhhHHHHHHhhcccCCccccccccchhhhhccCCCCCCCCCcccc
Q 038377          693 SGEELAQADSVTKLCYDLCDVVNVLAHTTDVPVSTKQLNNIRELMQGHTGQHQTDSVEVAPEQKMANGMGGKSHSDCENK  772 (979)
Q Consensus       693 ~~eElgrgDSVTkLH~DmSDAVNIL~htaev~~~~~q~~~I~kl~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  772 (979)
                      +++|+|||||||||||||||||||||||++++.   ++..|.+++++++..+.                           
T Consensus       674 ~~~e~gr~~gtTnLH~dvSDaVNILvyv~e~~~---~~~~~~~~~k~~~~~~~---------------------------  723 (889)
T KOG1356|consen  674 VSTELGRGDGTTNLHLDVSDAVNILVYVGEPPG---QIEQIAKVLKKIQEGDL---------------------------  723 (889)
T ss_pred             ccccccCCCCceeeceehhhhhhheeeeccCCc---hHHhHHHHHHhhhhcch---------------------------
Confidence            999999999999999999999999999999877   55566666666543110                           


Q ss_pred             cccccccccccccccccCccccccCCCCCCCCCCCCCCCccccccCCCCCCccchhhcccccccCCCcchhhhhccccCC
Q 038377          773 EVGLCDVLGEEITRHEAGDLNVRDRNSSHDGDYDTDSDPDSLILGCGTNQNSKKSEKRMHFKDHKNNSNYFIKERLAESC  852 (979)
Q Consensus       773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~e~~  852 (979)
                                                       |+.+                  ..+.              ....+.+
T Consensus       724 ---------------------------------de~~------------------~~~~--------------~~~~e~~  738 (889)
T KOG1356|consen  724 ---------------------------------DEIT------------------RSRI--------------SSVSETP  738 (889)
T ss_pred             ---------------------------------hhhh------------------hhhc--------------cccccCC
Confidence                                             0000                  0000              0123579


Q ss_pred             CccceeeccCCC---------------------CCCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccc
Q 038377          853 GAQWDVFRREDV---------------------VHPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQ  911 (979)
Q Consensus       853 GAlWDIFRreDv---------------------~hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQ  911 (979)
                      ||||||||+|||                     +||||||+||||++||+|||||||||||||+|+||||||||||||||
T Consensus       739 GALWhIF~~~Dv~KireyL~k~~~E~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyGVe~WtfvQ~LGdAVfIPAGaPHQ  818 (889)
T KOG1356|consen  739 GALWHIFRAQDVPKIREYLRKVCKEQGHEVPKVHHPIHDQSWYLDRYLRRRLKEEYGVEPWTFVQFLGDAVFIPAGAPHQ  818 (889)
T ss_pred             cchhhhhhhcchHHHHHHHHHhhHHhcCCCCcccCCCcccceeccHHHHHHHHHHhCCCccchhhcccceEEecCCCcHH
Confidence            999999999999                     89999999999999999999999999999999999999999999999


Q ss_pred             cccccccchhhccccCCcchHHHHHHHHHhhcCCcccccccchhhhhhHHHHHHHHHHHHHHHhhhc
Q 038377          912 IRNLKSCVNVVLDFISPENVTECIQLIDEIRLLPTDHKAKANKFEVTKMALYAINTAVKEIRELTCA  978 (979)
Q Consensus       912 VRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp~~H~akEDKLEVKkm~l~A~~~AV~ei~~l~~~  978 (979)
                      ||||+||||||+||||||||.||||||+|||+||++|.++|||||||||+||||++||++|+.++..
T Consensus       819 VrNLkSCikVa~DFVSPE~v~ec~rLT~EfR~Lp~~h~~~eDKLqvK~mi~hAVk~Av~~L~~~~s~  885 (889)
T KOG1356|consen  819 VRNLKSCIKVAEDFVSPEHVSECFRLTQEFRQLPQNHKNHEDKLQVKNMIYHAVKDAVGTLKEAESS  885 (889)
T ss_pred             hhhhhhHHHHHHhhCChhhHHHHHHHHHHHhhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999988753

>PF08879 WRC: WRC; InterPro: IPR014977 WRC is named after the conserved Trp-Arg-Cys motif, it contains two distinctive features: a putative nuclear localisation signal and a zinc-finger motif (C3H)	Back alignment and domain information

>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression	Back alignment and domain information

>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice []	Back alignment and domain information

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A	Back alignment and domain information

>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily	Back alignment and domain information

>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]	Back alignment and domain information

>cd02340 ZZ_NBR1_like Zinc finger, ZZ type	Back alignment and domain information

>cd02335 ZZ_ADA2 Zinc finger, ZZ type	Back alignment and domain information

>cd02249 ZZ Zinc finger, ZZ type	Back alignment and domain information

>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type	Back alignment and domain information

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	Back alignment and domain information

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)	Back alignment and domain information

>cd02344 ZZ_HERC2 Zinc finger, ZZ type	Back alignment and domain information

>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]	Back alignment and domain information

>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>cd02345 ZZ_dah Zinc finger, ZZ type	Back alignment and domain information

>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type	Back alignment and domain information

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]	Back alignment and domain information

>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein	Back alignment and domain information

>cd02338 ZZ_PCMF_like Zinc finger, ZZ type	Back alignment and domain information

>TIGR03214 ura-cupin putative allantoin catabolism protein	Back alignment and domain information

>PHA02926 zinc finger-like protein; Provisional	Back alignment and domain information

>cd02334 ZZ_dystrophin Zinc finger, ZZ type	Back alignment and domain information

>cd02337 ZZ_CBP Zinc finger, ZZ type	Back alignment and domain information

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A	Back alignment and domain information

>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]	Back alignment and domain information

>cd02343 ZZ_EF Zinc finger, ZZ type	Back alignment and domain information

>KOG3899 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		979
2ypd_A		392	Crystal Structure Of The Jumonji Domain Of Human Ju		9e-14

>pdb|2YPD|A Chain A, Crystal Structure Of The Jumonji Domain Of Human Jumonji Domain Containing 1c Protein Length = 392

Back alignment and structure

Iteration: 1

Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 65/107 (60%), Gaps = 1/107 (0%) Query: 867 PILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFI 926 PI DQ+++++ + RL EE+ + T Q +G+A+++PAG +Q++N SC+ V DF+ Sbjct: 268 PIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFV 327 Query: 927 SPENVTECIQLIDEIRLLPTDHKAKANKFEVTKMALYAINTAVKEIR 973 SPE++ E L E+RLL + +K +V + +A+ V+ ++ Sbjct: 328 SPEHLVESFHLTQELRLLKEEINYD-DKLQVKNILYHAVKEMVRALK 373

PyMOL of 2ypd

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		979
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
3kv9_A		397	JMJC domain-containing histone demethylation prote	3e-05
3k3o_A		371	PHF8, PHD finger protein 8; histone demethylase, c	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 58.7 bits (141), Expect = 9e-09
 Identities = 81/563 (14%), Positives = 154/563 (27%), Gaps = 182/563 (32%)

Query: 452 MEFGGCGDSFL--------DLRCVFPSC--WTKELEINAEQIVGCYELPETIDMSSCCSV 501
           +   G G +++         ++C       W     +N    +     PET+ +     +
Sbjct: 158 V--LGSGKTWVALDVCLSYKVQCKMDFKIFW-----LN----LKNCNSPETV-LEMLQKL 205

Query: 502 CTGMDHEVDGTKQLKVAAIRENSNDNFLFFPTLMDVQGDKLEHFQKHWRKGQP-IIVRNV 560
              +D                + +D+       +     +L    K        +++ NV
Sbjct: 206 LYQIDPNW------------TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253

Query: 561 LEVTSDLSWDP--IVMF---CTYLKNSSLKSENDGGAVEETGCSDWFEVEIGVKQLFLGS 615
                    +      F   C  L  +  K   D  +   T              + L  
Sbjct: 254 --------QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT------------THISLDH 293

Query: 616 LRGPKHADMCNEKLKL--KGWLSSRLFQEQFPAHYAEIIRGLPLPEYMDPKTGVLN-IAT 672
                  D   E   L  K +L  R   +  P    E++   P           L+ IA 
Sbjct: 294 HSMTLTPD---EVKSLLLK-YLDCRP--QDLPR---EVLTTNPR---------RLSIIAE 335

Query: 673 KLPQNFPTSDLGPSVYISYSSGEELAQA--DSVTKL-------CYDLCDVVNVLAHTTDV 723
            +     T D        + + ++L      S+  L        +D   V          
Sbjct: 336 SIRDGLATWD-----NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP-----SA 385

Query: 724 PVSTKQLNNIRELMQGHTGQHQTDSVEVAPEQKMANGMGGKSHSDCENKEVGLCDVLGEE 783
            + T  L     L+         D ++      + N +   S  + + KE          
Sbjct: 386 HIPTILL----SLIWF-------DVIKSDVMV-VVNKLHKYSLVEKQPKE---------- 423

Query: 784 ITRHEAGDLNVRDRNSSHDGDYDTDSDPDSLILGCGTNQNSKKSEKRMHFK--DHKNNSN 841
                          S      +     ++              E  +H    DH     
Sbjct: 424 ------------STISIPSIYLELKVKLEN--------------EYALHRSIVDH----- 452

Query: 842 YFIKERLAESCGAQWDVFRREDVVHPILDQNFF--LDATH--KMRLKEEFEIEPWTF--- 894
           Y I +            F  +D++ P LDQ F+  +   H   +   E   +    F   
Sbjct: 453 YNIPKT-----------FDSDDLIPPYLDQYFYSHI-GHHLKNIEHPERMTLFRMVFLDF 500

Query: 895 ---EQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVTECIQLIDEI-RLLPT-DHK 949
              EQ +             I N    +     +I  +N  +  +L++ I   LP  +  
Sbjct: 501 RFLEQKI-RHDSTAWNASGSILNTLQQLKFYKPYIC-DNDPKYERLVNAILDFLPKIEEN 558

Query: 950 AKANKF-EVTKMALYAINTAVKE 971
              +K+ ++ ++AL A + A+ E
Sbjct: 559 LICSKYTDLLRIALMAEDEAIFE 581

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A* Length = 397	Back alignment and structure

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A* Length = 371	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		979
2ypd_A		392	Probable JMJC domain-containing histone demethyla	100.0
4gjz_A		235	Lysine-specific demethylase 8; JMJC, beta barrel,	99.02
3k2o_A		336	Bifunctional arginine demethylase and lysyl-hydro	98.92
2yu1_A		451	JMJC domain-containing histone demethylation PROT;	98.88
3k3o_A		371	PHF8, PHD finger protein 8; histone demethylase, c	98.87
3kv4_A		447	PHD finger protein 8; epigenetics, histone CODE, c	98.83
3kv5_D		488	JMJC domain-containing histone demethylation prote	98.81
3pua_A		392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	98.72
3kv9_A		397	JMJC domain-containing histone demethylation prote	98.71
3al5_A		338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	98.66
3d8c_A		349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	98.46
3pur_A		528	Lysine-specific demethylase 7 homolog; oxidoreduct	97.24
2xxz_A		332	Lysine-specific demethylase 6B; oxidoreductase, hi	96.72
3avr_A		531	Lysine-specific demethylase 6A; cupin superfamily,	96.1
1vrb_A		342	Putative asparaginyl hydroxylase; 2636534, structu	95.52
4ask_A		510	Lysine-specific demethylase 6B; oxidoreductase, KD	94.99
2pfw_A		116	Cupin 2, conserved barrel domain protein; cupin do	92.66
4e2g_A		126	Cupin 2 conserved barrel domain protein; MCSG, PSI	92.17
3lrq_A		100	E3 ubiquitin-protein ligase TRIM37; structural gen	91.5
1x4j_A		75	Ring finger protein 38; structural genomics, NPPSF	91.09
2opk_A		112	Hypothetical protein; putative mannose-6-phosphate	90.24
2kiz_A		69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	90.22
3dxt_A		354	JMJC domain-containing histone demethylation PROT;	89.9
2q30_A		110	Uncharacterized protein; double-stranded beta-heli	89.72
3h7j_A		243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	89.62
1yhf_A		115	Hypothetical protein SPY1581; structural genomics,	89.61
2l0b_A		91	E3 ubiquitin-protein ligase praja-1; zinc finger,	89.47
1iym_A		55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	89.12
3lag_A		98	Uncharacterized protein RPA4178; functionally unkn	88.98
3ht1_A		145	REMF protein; cupin fold, Zn-binding, antibiotic b	88.87
3fjs_A		114	Uncharacterized protein with RMLC-like cupin fold;	88.83
3h8u_A		125	Uncharacterized conserved protein with double-STR	88.43
2djb_A		72	Polycomb group ring finger protein 6; PCGF6, ring	88.2
2ecm_A		55	Ring finger and CHY zinc finger domain- containing	88.08
1v70_A		105	Probable antibiotics synthesis protein; structural	88.04
2fc7_A		82	ZZZ3 protein; structure genomics, ZZ domain, struc	87.6
1chc_A		68	Equine herpes virus-1 ring domain; viral protein;	87.56
2b8m_A		117	Hypothetical protein MJ0764; structural genomics,	87.32
2xlg_A		239	SLL1785 protein, CUCA; metal binding protein, cupi	87.31
2fqp_A		97	Hypothetical protein BP2299; double-stranded beta-	87.25
2ozj_A		114	Cupin 2, conserved barrel; cupin superfamily prote	86.99
2ect_A		78	Ring finger protein 126; metal binding protein, st	86.58
1juh_A		350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	86.47
2ckl_B		165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	86.2
2gu9_A		113	Tetracenomycin polyketide synthesis protein; X-RAY	86.18
3ibm_A		167	Cupin 2, conserved barrel domain protein; cupin 2	86.09
3d82_A		102	Cupin 2, conserved barrel domain protein; structur	85.87
1o5u_A		101	Novel thermotoga maritima enzyme TM1112; cupin, st	85.75
2ckl_A		108	Polycomb group ring finger protein 4; BMI1, RING1B	85.31
3kgz_A		156	Cupin 2 conserved barrel domain protein; metallopr	85.26
3ng2_A		71	RNF4, snurf, ring finger protein 4; ring domain, E	85.22
2d8t_A		71	Dactylidin, ring finger protein 146; RNF146, ring	85.2
2ea6_A		69	Ring finger protein 4; RNF4, RES4-26, ring domain,	85.11
3opt_A		373	DNA damage-responsive transcriptional repressor R;	84.54
3rns_A		227	Cupin 2 conserved barrel domain protein; structura	84.34
2y43_A		99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	84.34
2csy_A		81	Zinc finger protein 183-like 1; ring finger protei	84.29
2ozi_A		98	Hypothetical protein RPA4178; APC6210, putative pr	83.87
2xeu_A		64	Ring finger protein 4; transcription, zinc-finger,	83.57
1y9q_A		192	Transcriptional regulator, HTH_3 family; transcrip	83.48
4h7l_A		157	Uncharacterized protein; structural genomics, PSI-	83.44
4ayc_A		138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	82.83
2ep4_A		74	Ring finger protein 24; zinc binding, ubiquitin, E	82.76
2dip_A		98	Zinc finger SWIM domain-containing protein 2; ZZ d	82.43
2ecy_A		66	TNF receptor-associated factor 3; metal binding pr	82.28
2i45_A		107	Hypothetical protein; neisseria meningitidis cupin	82.01
2e5r_A		63	Dystrobrevin alpha; ZZ domain, structural genomics	81.99
2ox0_A		381	JMJC domain-containing histone demethylation PROT;	81.98
2yur_A		74	Retinoblastoma-binding protein 6; P53-associated c	81.57
1lr5_A		163	Auxin binding protein 1; beta jellyroll, double st	81.44
3l2h_A		162	Putative sugar phosphate isomerase; AFE_0303, stru	80.89
2oa2_A		148	BH2720 protein; 10175341, structural genomics, joi	80.65
3cew_A		125	Uncharacterized cupin protein; all beta-protein, j	80.52
1tot_A		52	CREB-binding protein; zinc binding, CBP, TAZ2, tra	80.44

>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=9.8e-125  Score=1032.34  Aligned_cols=332  Identities=29%  Similarity=0.525  Sum_probs=253.5

Q ss_pred             ccCcHHHHHHHHhcCCCEEEEeccccCCCCCCcchhhhhhhhhcccccCCCCCCceEEeeCCCCceEeechhcccccccC
Q 038377          538 QGDKLEHFQKHWRKGQPIIVRNVLEVTSDLSWDPIVMFCTYLKNSSLKSENDGGAVEETGCSDWFEVEIGVKQLFLGSLR  617 (979)
Q Consensus       538 ~~~~l~hFQ~hW~kGePVIVr~Vl~~~s~lsWeP~~mwr~~~e~~~~~~~~~~~~VkaIDCld~~evei~v~qFF~Gy~~  617 (979)
                      +.+|+.|||+||++|||||||||++++++++|+|++||++|.        +.  .+++|||+||++++|+|++||+||.+
T Consensus        20 ~~~n~~~Fq~hW~~GePViVs~V~~~~~~~~W~Pe~~~~~~g--------d~--~~~lidC~~~~~~~i~v~~Ff~Gf~~   89 (392)
T 2ypd_A           20 NSSNWKLFKECWKQGQPAVVSGVHKKMNISLWKAESISLDFG--------DH--QADLLNCKDSIISNANVKEFWDGFEE   89 (392)
T ss_dssp             CTTHHHHHHHHHTTTCCEEECCHHHHSCGGGGSHHHHHHHHT--------TS--CCCCEETTTCCBCSCCHHHHHHTSSB
T ss_pred             CcccHHHHHHHHhCCCcEEEechhhhCcCCccCHHHHHHHhc--------Cc--eeeeeeCCCCccccCcHHHHhhhccc
Confidence            567999999999999999999999999999999999999985        22  35789999999999999999999987


Q ss_pred             CC---CCCCCCccceeecCCCChhhHHHhchhhHHHHHhcCCCCCccCCCCccccccccCCCCCCCCCCCCcchhccccc
Q 038377          618 GP---KHADMCNEKLKLKGWLSSRLFQEQFPAHYAEIIRGLPLPEYMDPKTGVLNIATKLPQNFPTSDLGPSVYISYSSG  694 (979)
Q Consensus       618 gr---~~~n~wp~mLKLKDWPps~~Fee~LP~h~~eFi~aLP~~EYT~Pr~G~LNLAskLP~~~lkPDLGPK~YIAYG~~  694 (979)
                      |+   .++++||+|||||||||+++|+++||+||+|||++|||||||||+ |+|||||+||+++++||||||||||||++
T Consensus        90 ~~~r~~~~~g~p~~LKLKDWPp~~~F~e~lP~~~~df~~~LPlpEYt~p~-G~LNLAs~LP~~~~kPDLGPK~YiAYG~~  168 (392)
T 2ypd_A           90 VSKRQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYCNPE-GKFNLASHLPGFFVRPDLGPRLCSAYGVV  168 (392)
T ss_dssp             GGGC------CCCCEEECSSSBTHHHHHHSHHHHHHHHHHCSSHHHHSTT-CTTCCTTTSCGGGCC---CCEEEEECCST
T ss_pred             cccCCcCCCCCcceeeecCCCChHHHHHHhHHHHHHHHHcCCchHhhCCC-ccchHHHhCCCCCCCCCCCcchhhhcCcc
Confidence            65   467999999999999999999999999999999999999999985 99999999999999999999999999999


Q ss_pred             ccccCCCCcceeeeeccchhhhhhccCccCCChhhhHHHHHHhhcccCCccccccccchhhhhccCCCCCCCCCcccccc
Q 038377          695 EELAQADSVTKLCYDLCDVVNVLAHTTDVPVSTKQLNNIRELMQGHTGQHQTDSVEVAPEQKMANGMGGKSHSDCENKEV  774 (979)
Q Consensus       695 eElgrgDSVTkLH~DmSDAVNIL~htaev~~~~~q~~~I~kl~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  774 (979)
                      +++|+++|||||||||||||||||||++.+.... .. ..++++.+.+                                
T Consensus       169 ~~~~~~~gvT~LH~DmsDaVNiL~h~~~~~~~~~-~~-~~~~l~~~~~--------------------------------  214 (392)
T 2ypd_A          169 AAKDHDIGTTNLHIEVSDVVNILVYVGIAKGNGI-LS-KAGILKKFEE--------------------------------  214 (392)
T ss_dssp             TTTCTTCCSEEEEECSSEEEEEEEEEECCBCTTC-CC-HHHHHHHHHT--------------------------------
T ss_pred             hhcccCCCcceeeeehhhhhhhhheecccCcccc-ch-hhhhhhhhhh--------------------------------
Confidence            9999999999999999999999999996432111 00 1111111100                                


Q ss_pred             cccccccccccccccCccccccCCCCCCCCCCCCCCCccccccCCCCCCccchhhcccccccCCCcchhhhhccccCCCc
Q 038377          775 GLCDVLGEEITRHEAGDLNVRDRNSSHDGDYDTDSDPDSLILGCGTNQNSKKSEKRMHFKDHKNNSNYFIKERLAESCGA  854 (979)
Q Consensus       775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~e~~GA  854 (979)
                                                  ++.+   +   .            ...|.              .+..+.+||
T Consensus       215 ----------------------------~~~d---~---~------------~~~r~--------------~~~~~~~GA  234 (392)
T 2ypd_A          215 ----------------------------EDLD---D---I------------LRKRL--------------KDSSEIPGA  234 (392)
T ss_dssp             ----------------------------SCCC---H---H------------HHHHH--------------TCTTCCEEE
T ss_pred             ----------------------------cccc---H---H------------Hhhhc--------------cCCCCCCCc
Confidence                                        0000   0   0            00000              012347899


Q ss_pred             cceeeccCCC---------------------CCCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccc
Q 038377          855 QWDVFRREDV---------------------VHPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIR  913 (979)
Q Consensus       855 lWDIFRreDv---------------------~hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVR  913 (979)
                      +|||||+||+                     +||||||+||||++||++|+|||||+||||+|++|||||||||||||||
T Consensus       235 lW~Ifr~~D~~klr~~L~~~~~e~~~~~~~~~dPihdq~~yL~~~~r~~L~ee~gv~~~~~~Q~~GeavfiPaG~~HQV~  314 (392)
T 2ypd_A          235 LWHIYAGKDVDKIREFLQKISKEQGLEVLPEHDPIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQVQ  314 (392)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHC------CCHHHHTCCCCCHHHHHHHHHHHCCCCEEEEEETTCEEEECTTCEEEEE
T ss_pred             eeeeeCHhhHHHHHHHHHHHHHhhCCCccCCCCcCcCCCEEecHHHHHHHHHhcCCeeEEEEEcCCCEEEecCCCHHHHh
Confidence            9999999999                     7999999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhccccCCcchHHHHHHHHHhhcCCcccccccchhhhhhHHHHHHHHHHHHHHHh
Q 038377          914 NLKSCVNVVLDFISPENVTECIQLIDEIRLLPTDHKAKANKFEVTKMALYAINTAVKEIREL  975 (979)
Q Consensus       914 NLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp~~H~akEDKLEVKkm~l~A~~~AV~ei~~l  975 (979)
                      ||+||||||+||||||||++|++||+|||+|| +|.++|||||||||+||||++||++|++.
T Consensus       315 Nl~~~i~va~df~spe~~~~c~~lt~E~R~l~-~~~~~edkLqvk~m~~~av~~av~~l~~~  375 (392)
T 2ypd_A          315 NFHSCIQVTEDFVSPEHLVESFHLTQELRLLK-EEINYDDKLQVKNILYHAVKEMVRALKIH  375 (392)
T ss_dssp             ESSEEEEEEEEECCGGGHHHHHHHHHHC----------------------------------
T ss_pred             cccchhhHhhhhcChhhHHHHHHHHHHHhhcc-hhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999997 69999999999999999999999999864

PyMOL of 2ypd

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*	Back alignment and structure

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*	Back alignment and structure

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A	Back alignment and structure

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*	Back alignment and structure

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}	Back alignment and structure

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*	Back alignment and structure

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*	Back alignment and structure

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*	Back alignment and structure

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*	Back alignment and structure

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...	Back alignment and structure

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*	Back alignment and structure

>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens}	Back alignment and structure

>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*	Back alignment and structure

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11	Back alignment and structure

>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A*	Back alignment and structure

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}	Back alignment and structure

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}	Back alignment and structure

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}	Back alignment and structure

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}	Back alignment and structure

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}	Back alignment and structure

>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*	Back alignment and structure

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}	Back alignment and structure

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*	Back alignment and structure

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9	Back alignment and structure

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}	Back alignment and structure

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1	Back alignment and structure

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}	Back alignment and structure

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A	Back alignment and structure

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}	Back alignment and structure

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}	Back alignment and structure

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A	Back alignment and structure

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A	Back alignment and structure

>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6	Back alignment and structure

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1	Back alignment and structure

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18	Back alignment and structure

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A	Back alignment and structure

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}	Back alignment and structure

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}	Back alignment and structure

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}	Back alignment and structure

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*	Back alignment and structure

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B	Back alignment and structure

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A	Back alignment and structure

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}	Back alignment and structure

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}	Back alignment and structure

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A	Back alignment and structure

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A	Back alignment and structure

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}	Back alignment and structure

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}	Back alignment and structure

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*	Back alignment and structure

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}	Back alignment and structure

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}	Back alignment and structure

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}	Back alignment and structure

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15	Back alignment and structure

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}	Back alignment and structure

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C	Back alignment and structure

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6	Back alignment and structure

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}	Back alignment and structure

>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*	Back alignment and structure

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}	Back alignment and structure

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*	Back alignment and structure

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}	Back alignment and structure

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}	Back alignment and structure

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}	Back alignment and structure

>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		979
d1h2ka_		335	Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum	98.64
d1vrba1		319	Putative asparaginyl hydroxylase YxbC {Bacillus su	98.62
d1v70a_		105	Hypothetical protein TTHA0104 {Thermus thermophilu	94.66
d1yhfa1		112	Hypothetical protein SPy1581 {Streptococcus pyogen	94.43
d1vj2a_		114	Hypothetical protein TM1459 {Thermotoga maritima [	93.29
d1chca_		68	Immediate early protein, IEEHV {Equine herpesvirus	91.62
d1iyma_		55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	90.56
d1jm7b_		97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	90.28
d1rc6a_		253	Hypothetical protein YlbA {Escherichia coli [TaxId	89.8
d1sefa_		250	Hypothetical protein EF2996 {Enterococcus faecalis	89.73
d2b8ma1		108	Hypothetical protein MJ0764 {Archaeon Methanococcu	89.65
d2fc7a1		69	Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu	89.51
d1lr5a_		160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	88.44
d1o4ta_		115	Hypothetical protein TM1287 {Thermotoga maritima [	87.92
d2dipa1		85	Zinc finger ZZ-type-containing protein 2 {Human (H	86.92
d1g25a_		65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	85.63
d1v87a_		114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	85.36
d2bnma2		122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	83.54
d1fbva4		79	CBL {Human (Homo sapiens) [TaxId: 9606]}	83.18
d1mm2a_		61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	81.28
d2baya1		56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	81.2
d1sfna_		245	Hypothetical protein DR1152 {Deinococcus radiodura	81.12

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=2.6e-09  Score=113.23  Aligned_cols=38  Identities=16%  Similarity=0.264  Sum_probs=34.6

Q ss_pred             CccceeEeeecCceeEecCCCccccccccc-cchhhccc
Q 038377          888 EIEPWTFEQHVGEAVIIPAGCPYQIRNLKS-CVNVVLDF  925 (979)
Q Consensus       888 GVEpWTF~Q~lGEAVFIPAGCPHQVRNLkS-CIKVAlDF  925 (979)
                      ++.+|.+++.+||++|||+|..|||+||.+ +|.|++.|
T Consensus       243 ~~~~~~~~l~pGd~L~iP~~w~H~V~~~~~~~~sisvn~  281 (335)
T d1h2ka_         243 NVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNF  281 (335)
T ss_dssp             GCCEEEEEECTTCEEEECTTCEEEEEECTTSCCEEEEEE
T ss_pred             cCCceEEEECCCCEEeeCCCCeEEEEEcCCCCeEEEEEe
Confidence            347999999999999999999999999965 89999987

PyMOL of d1h2ka_

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}	Back information, alignment and structure

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}	Back information, alignment and structure

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}	Back information, alignment and structure

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}	Back information, alignment and structure

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure