Citrus Sinensis ID: 038388

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
MSGAQGAQPPGSRTATTYESVPQDHNPRTDLHSREDERGIQIDKLQDKVEDAAGRGGPVFGAAATGIDDNNQQQQQKKKPDLGVTGTG
Secondary Structure (PSIPRED)
ccccccccccccccccEEEccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEEEEEcccccccccccccHHcccccEHHHHHcccccccccccccccccccccccccHHHcccccccccccccc
Coil and Loop (DISEMBL)
msgaqgaqppgsrtattyesvpqdhnprtdlhsredergiQIDKLQDKVEdaagrggpvfgaaatgiddnnqqqqqkkkpdlgvtgtg
Flexible Loop (DISEMBL)
msgaqgaqppgsrtattyesvpqdhnprtdlhsrederGIQIDKLQDKVEDAAGRGGPVFGAAATgiddnnqqqqqkkkpdlgvtgtg
Low Complexity Region (SEG)
MSGAQGAQPPGSRTATTYESVPQDHNPRTDLHSREDERGIQIDKLQDKVEDAAGRGGPVFGAAATGIDDNNqqqqqkkkPDLGVTGTG
Disordered region (IsUnstruct)
****************************************************************************************
Disordered Region (DISOPRED)
*****************************************************GRGGPVFGAAATG***************LGVT***
Disordered Region (DISEMBL)
***********************************DERGIQIDKLQDKVEDAAGRGGPVFGAAATGIDD*******************
Disordered Region (DISPRO)
************R**T**********************GIQIDKLQDKVED*************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSGAQGAQPPGSRTATTYESVPQDHNPRTDLHSREDERGIQIDKLQDKVEDAAGRGGPVFGAAATGIDDNNQQQQQKKKPDLGVTGTG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
225462346	84	PREDICTED: uncharacterized protein LOC10	0.931	0.976	0.636	2e-20
255584110	80	conserved hypothetical protein [Ricinus	0.875	0.962	0.674	6e-20
449461747	78	PREDICTED: uncharacterized protein LOC10	0.875	0.987	0.674	6e-19
18399803	78	uncharacterized protein [Arabidopsis tha	0.875	0.987	0.651	1e-18
224109134	79	predicted protein [Populus trichocarpa]	0.875	0.974	0.640	2e-18
147857568	349	hypothetical protein VITISV_001327 [Viti	0.920	0.232	0.593	8e-18
357451195	80	Seed maturation protein PM41 [Medicago t	0.875	0.962	0.617	8e-18
297736084	86	unnamed protein product [Vitis vinifera]	0.875	0.895	0.614	2e-17
297825033	71	hypothetical protein ARALYDRAFT_481046 [	0.784	0.971	0.684	6e-17
351727681	78	seed maturation protein PM41 [Glycine ma	0.875	0.987	0.617	8e-17

>gi|225462346|ref|XP_002269075.1| PREDICTED: uncharacterized protein LOC100265574 [Vitis vinifera]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/88 (63%), Positives = 66/88 (75%), Gaps = 6/88 (6%)

Query: 1  MSGAQGAQPPGSRTATTYESVPQDHNP-RTDLHSREDERGIQIDKLQDKVEDAAGRGGPV 59
          MSGAQGAQP  + TATTYESV  + N  + DL SREDE GI++DK QDKVEDAAG+GGPV
Sbjct: 1  MSGAQGAQPKEAYTATTYESVGGEENKTKLDLRSREDEGGIKVDKFQDKVEDAAGKGGPV 60

Query: 60 FGAAATGIDDNNQQQQQKKKPDLGVTGT 87
          FGAAA       ++++   KPDLGVTGT
Sbjct: 61 FGAAA-----QQEEEEGGDKPDLGVTGT 83

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584110|ref|XP_002532797.1| conserved hypothetical protein [Ricinus communis] gi|223527457|gb|EEF29590.1| conserved hypothetical protein [Ricinus communis]

 Score =  101 bits (252), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/89 (67%), Positives = 66/89 (74%), Gaps = 12/89 (13%)

Query: 1  MSGAQGAQPPGSRTATTYESVPQDHNP-RTDLHSREDERGIQIDKLQDKVEDAAGRGGPV 59
          MSGAQGAQPPGSRTATTYESV +  N  RTDL +RED+  IQIDK QDKV DAAG+GGPV
Sbjct: 1  MSGAQGAQPPGSRTATTYESVERGENKTRTDLRAREDQGMIQIDKEQDKVADAAGKGGPV 60

Query: 60 FGAAATGIDDNNQQQQQKKKPDLGVTGTG 88
          FGA   G D++        K DLGVTGTG
Sbjct: 61 FGA---GKDED--------KKDLGVTGTG 78

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461747|ref|XP_004148603.1| PREDICTED: uncharacterized protein LOC101209719 [Cucumis sativus] gi|449513239|ref|XP_004164271.1| PREDICTED: uncharacterized protein LOC101223335 [Cucumis sativus]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/89 (67%), Positives = 63/89 (70%), Gaps = 12/89 (13%)

Query: 1  MSGAQGAQPPGSRTATTYESVPQDHN-PRTDLHSREDERGIQIDKLQDKVEDAAGRGGPV 59
          MSGAQGAQP  S TATTYESV    N  RTD+ SRED   IQIDK+QDKVEDAAG+GGPV
Sbjct: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKIQDKVEDAAGKGGPV 60

Query: 60 FGAAATGIDDNNQQQQQKKKPDLGVTGTG 88
          FGA   G DD        KK DLGVTGTG
Sbjct: 61 FGA---GKDD--------KKQDLGVTGTG 78

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18399803|ref|NP_565518.1| uncharacterized protein [Arabidopsis thaliana] gi|11692848|gb|AAG40027.1|AF324676_1 At2g21820 [Arabidopsis thaliana] gi|12642934|gb|AAK00409.1|AF339727_1 unknown protein [Arabidopsis thaliana] gi|4417276|gb|AAD20401.1| expressed protein [Arabidopsis thaliana] gi|330252132|gb|AEC07226.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/89 (65%), Positives = 63/89 (70%), Gaps = 12/89 (13%)

Query: 1  MSGAQGAQPPGSRTATTYESVPQDHNP-RTDLHSREDERGIQIDKLQDKVEDAAGRGGPV 59
          MSGAQGA+P  SRTATTYESV    N  + D+ S+EDE GIQ+DKLQDKV DAAG GGPV
Sbjct: 1  MSGAQGAEPMDSRTATTYESVEGGQNKTKLDIRSKEDEGGIQVDKLQDKVSDAAGLGGPV 60

Query: 60 FGAAATGIDDNNQQQQQKKKPDLGVTGTG 88
          FGA   G DD        KK DLGVTGTG
Sbjct: 61 FGA---GKDD--------KKQDLGVTGTG 78

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109134|ref|XP_002315095.1| predicted protein [Populus trichocarpa] gi|222864135|gb|EEF01266.1| predicted protein [Populus trichocarpa]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 63/89 (70%), Gaps = 12/89 (13%)

Query: 1  MSGAQGAQPPGSRTATTYESVPQDHNP-RTDLHSREDERGIQIDKLQDKVEDAAGRGGPV 59
          MSGAQGAQPPGS TATTYESVP   N  R  + S+ED+  IQ+DKLQ+KV DAAG GGPV
Sbjct: 1  MSGAQGAQPPGSTTATTYESVPGGENKTRVKVDSKEDQGAIQVDKLQEKVPDAAGEGGPV 60

Query: 60 FGAAATGIDDNNQQQQQKKKPDLGVTGTG 88
          FGA   G D+N        K DLGVTGTG
Sbjct: 61 FGA---GKDEN--------KKDLGVTGTG 78

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147857568|emb|CAN83080.1| hypothetical protein VITISV_001327 [Vitis vinifera]

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 65/91 (71%), Gaps = 10/91 (10%)

Query: 1   MSGAQGAQPPGSRTATTYESVPQDHN-PRTDLHSREDERGIQIDKLQDKVEDAAGRGGPV 59
           + G  GAQP  + TATTYESV  + N  + DL SREDE GI++DK QDKVEDAAG+GGPV
Sbjct: 266 LLGFFGAQPKEAYTATTYESVGGEENKTKLDLRSREDEGGIKVDKFQDKVEDAAGKGGPV 325

Query: 60  FGAAATGIDDNNQQQQQK--KKPDLGVTGTG 88
           FGAAA       QQ++++   KPDLGVTGT 
Sbjct: 326 FGAAA-------QQEEEEGGDKPDLGVTGTA 349

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357451195|ref|XP_003595874.1| Seed maturation protein PM41 [Medicago truncatula] gi|124360189|gb|ABN08202.1| hypothetical protein MtrDRAFT_AC155884g16v2 [Medicago truncatula] gi|355484922|gb|AES66125.1| Seed maturation protein PM41 [Medicago truncatula]

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/89 (61%), Positives = 63/89 (70%), Gaps = 12/89 (13%)

Query: 1  MSGAQGAQPPGSRTATTYESVPQDHN-PRTDLHSREDERGIQIDKLQDKVEDAAGRGGPV 59
          MSGAQGAQP  S+TAT YES+    N  RTDL S+ED+ GIQ+DKLQ+KV D AG+GGPV
Sbjct: 1  MSGAQGAQPKESKTATIYESIEGGENRTRTDLFSKEDQGGIQVDKLQEKVHDPAGKGGPV 60

Query: 60 FGAAATGIDDNNQQQQQKKKPDLGVTGTG 88
          FGA   G D+N Q        DLGVTGTG
Sbjct: 61 FGA---GKDENKQ--------DLGVTGTG 78

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736084|emb|CBI24122.3| unnamed protein product [Vitis vinifera]

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/83 (61%), Positives = 61/83 (73%), Gaps = 6/83 (7%)

Query: 1  MSGAQGAQPPGSRTATTYESVPQDHNP-RTDLHSREDERGIQIDKLQDKVEDAAGRGGPV 59
          MSGAQGAQP  + TATTYESV  + N  + DL SREDE GI++DK QDKVEDAAG+GGPV
Sbjct: 1  MSGAQGAQPKEAYTATTYESVGGEENKTKLDLRSREDEGGIKVDKFQDKVEDAAGKGGPV 60

Query: 60 FGAAATGIDDNNQQQQQKKKPDL 82
          FGAAA       ++++   KPDL
Sbjct: 61 FGAAA-----QQEEEEGGDKPDL 78

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297825033|ref|XP_002880399.1| hypothetical protein ARALYDRAFT_481046 [Arabidopsis lyrata subsp. lyrata] gi|297326238|gb|EFH56658.1| hypothetical protein ARALYDRAFT_481046 [Arabidopsis lyrata subsp. lyrata]

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/73 (68%), Positives = 55/73 (75%), Gaps = 4/73 (5%)

Query: 1  MSGAQGAQPPGSRTATTYESVPQDHNP-RTDLHSREDERGIQIDKLQDKVEDAAGRGGPV 59
          MSGAQGA+P GSRTATTYESV    N  + D+ S+EDE GIQ+DKLQDKV DAAG GGPV
Sbjct: 1  MSGAQGAEPMGSRTATTYESVEGGQNKTKLDIKSKEDEGGIQVDKLQDKVSDAAGLGGPV 60

Query: 60 FGAAATGIDDNNQ 72
          FGA   G DD  Q
Sbjct: 61 FGA---GKDDKKQ 70

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727681|ref|NP_001237169.1| seed maturation protein PM41 [Glycine max] gi|5802250|gb|AAD51628.1|AF169025_1 seed maturation protein PM41 [Glycine max]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 55/89 (61%), Positives = 63/89 (70%), Gaps = 12/89 (13%)

Query: 1  MSGAQGAQPPGSRTATTYESVPQDHN-PRTDLHSREDERGIQIDKLQDKVEDAAGRGGPV 59
          MSGAQGAQP  S+TATTYESV    N  RTDL SRED+  IQ++KLQ+KV D AG+GGPV
Sbjct: 1  MSGAQGAQPKESKTATTYESVEGGENRTRTDLLSREDQGCIQVEKLQEKVHDPAGKGGPV 60

Query: 60 FGAAATGIDDNNQQQQQKKKPDLGVTGTG 88
          FGA   G D++ Q        DLGVTGTG
Sbjct: 61 FGA---GKDEDKQ--------DLGVTGTG 78

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
TAIR|locus:2052511	78	AT2G21820 "AT2G21820" [Arabido	0.875	0.987	0.629	3.5e-20

TAIR|locus:2052511 AT2G21820 "AT2G21820" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 56/89 (62%), Positives = 61/89 (68%)

Query:     1 MSGAQGAQPPGSRTATTYESVPQDHNP-RTDLHSREDERGIQIDKLQDKVEDAAGRGGPV 59
             MSGAQGA+P  SRTATTYESV    N  + D+ S+EDE GIQ+DKLQDKV DAAG GGPV
Sbjct:     1 MSGAQGAEPMDSRTATTYESVEGGQNKTKLDIRSKEDEGGIQVDKLQDKVSDAAGLGGPV 60

Query:    60 FGAAATGIDDNNXXXXXXXXPDLGVTGTG 88
             FGA   G DD           DLGVTGTG
Sbjct:    61 FGA---GKDDKKQ--------DLGVTGTG 78


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.308   0.131   0.381    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       88        80   0.00091  102 3  11 23  0.39    30
                                                     29  0.41    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  432 (46 KB)
  Total size of DFA:  85 KB (2067 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.79u 0.14s 9.93t   Elapsed:  00:00:00
  Total cpu time:  9.79u 0.14s 9.93t   Elapsed:  00:00:00
  Start:  Sat May 11 04:28:08 2013   End:  Sat May 11 04:28:08 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00