Citrus Sinensis ID: 038391
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 186 | 2.2.26 [Sep-21-2011] | |||||||
| B9LSX2 | 269 | Ribosomal RNA large subun | yes | no | 0.844 | 0.583 | 0.331 | 3e-23 | |
| A0LGZ0 | 197 | Ribosomal RNA large subun | yes | no | 0.795 | 0.751 | 0.373 | 4e-23 | |
| B8FL12 | 207 | Ribosomal RNA large subun | yes | no | 0.801 | 0.719 | 0.363 | 2e-22 | |
| A8ZT18 | 207 | Ribosomal RNA large subun | yes | no | 0.844 | 0.758 | 0.342 | 1e-21 | |
| Q58771 | 245 | Ribosomal RNA large subun | yes | no | 0.725 | 0.551 | 0.390 | 2e-21 | |
| Q18E61 | 256 | Ribosomal RNA large subun | yes | no | 0.822 | 0.597 | 0.316 | 8e-21 | |
| Q9HN40 | 259 | Ribosomal RNA large subun | yes | no | 0.833 | 0.598 | 0.318 | 1e-20 | |
| B0R7G3 | 259 | Ribosomal RNA large subun | yes | no | 0.833 | 0.598 | 0.318 | 1e-20 | |
| Q8TR92 | 272 | Ribosomal RNA large subun | yes | no | 0.768 | 0.525 | 0.355 | 1e-19 | |
| Q8PUP4 | 268 | Ribosomal RNA large subun | yes | no | 0.763 | 0.529 | 0.314 | 1e-19 |
| >sp|B9LSX2|RLME_HALLT Ribosomal RNA large subunit methyltransferase E OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rlmE PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 99/184 (53%), Gaps = 27/184 (14%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG D +Y ++++ GY ARSA+KL QI ++ L + G +V+DLG APG WLQVA +
Sbjct: 1 MSG---KDEYYNKSKQQGYRARSAYKLKQIDEEANLFERGDTVVDLGAAPGGWLQVAAEE 57
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
+G G+VVG+D++++ H V+T+ D+ + + ++G V++SD
Sbjct: 58 VG---ESGTVVGVDLQRIDDLDDHD---VETIRGDMTEERTRHYLREAIGERGADVVISD 111
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
M P+++G D A SV L +A D+A +L PGG V+K+
Sbjct: 112 MAPNMTGEYALDHARSVHLARQAFDVA------------------EELLAPGGDFVVKVF 153
Query: 181 ESQD 184
+ +D
Sbjct: 154 QGED 157
|
Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) (taxid: 416348) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 6EC: 6 |
| >sp|A0LGZ0|RLME_SYNFM Ribosomal RNA large subunit methyltransferase E OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rlmE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (268), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 96/174 (55%), Gaps = 26/174 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++ +A++ Y+AR+ +KL +IQ +YK++KPG+ VLDLG APG+W+Q A + +GP
Sbjct: 7 DHYFHKAKKEHYLARAVYKLQEIQDRYKILKPGNRVLDLGAAPGSWMQFAREIVGP---S 63
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VVG+D+K V+ V + DV + R+LS + F V+LSDM PS SG
Sbjct: 64 GLVVGVDLKGVE---HRFPEGVVVLQGDVTD--PELARSLSVEHGPFDVVLSDMAPSTSG 118
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
I D+A S L A+++A L+PGGH V KL +
Sbjct: 119 IRVADSARSALLFESALEMA------------------RSALRPGGHFVAKLFQ 154
|
Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) (taxid: 335543) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 6 |
| >sp|B8FL12|RLME_DESAA Ribosomal RNA large subunit methyltransferase E OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rlmE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 95/176 (53%), Gaps = 27/176 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +AQ+ G+ ARS FKL ++QK++K+++PG VLDLGCAPG+WL+ A Q +G +
Sbjct: 13 DHYTDKAQKAGFPARSVFKLEEMQKRWKILRPGQKVLDLGCAPGSWLKYASQIVG---DS 69
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+G+D+K + P Q + D L + + + F V+LSDM P+ +G
Sbjct: 70 GRVIGLDLKPMDQPD---KPNAQFIQGDAFELTQEFLDEIG---RDFDVVLSDMAPNTTG 123
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
I DA S AL +ALA+ V VLKPGG V K+ + +
Sbjct: 124 IKNVDALKSA---------ALCESALAAAVT---------VLKPGGSFVCKIFQGE 161
|
Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. Desulfatibacillum alkenivorans (strain AK-01) (taxid: 439235) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 6 |
| >sp|A8ZT18|RLME_DESOH Ribosomal RNA large subunit methyltransferase E OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=rlmE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 94/184 (51%), Gaps = 27/184 (14%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G PD + R+A+ Y ARS +KL +IQK++ ++KPG++VLDLGC PG+W+ A +++G
Sbjct: 8 GRKTPDHYARKAKTEHYPARSVYKLQEIQKKHNVLKPGNAVLDLGCFPGSWMMFAAETVG 67
Query: 63 PLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMC 122
GG V GID+KKV + H A+ ++ D+ + AL+ V+LSDM
Sbjct: 68 ---RGGKVTGIDLKKV---ATHMPAQATSLQEDIYEIDRE---ALAGTLGPLDVVLSDMA 118
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P G DAA S + + +LKPGGH V K+ +
Sbjct: 119 PDTMGNKFTDAARSFH------------------LAAAALDLALFLLKPGGHFVCKVFQG 160
Query: 183 QDAQ 186
+D Q
Sbjct: 161 EDFQ 164
|
Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. Desulfococcus oleovorans (strain DSM 6200 / Hxd3) (taxid: 96561) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 6 |
| >sp|Q58771|RLME_METJA Ribosomal RNA large subunit methyltransferase E OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=rlmE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 87/141 (61%), Gaps = 6/141 (4%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF+Y+ A++L Y +R++FKL+Q+ +++ +IKPG VLDLGCAPG W+QVA + +G +
Sbjct: 15 DFYYKLAKKLKYRSRASFKLMQLNEKFNVIKPGKIVLDLGCAPGGWMQVAREIVG---DK 71
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPK-QKGFSVILSDMCPSVS 126
G V+GID++ VK D V + N++R L P +K V++SD P++S
Sbjct: 72 GFVIGIDLQPVK--PFEYDNVVAIKGDFTLEENLNKIRELIPNDEKKVDVVISDASPNIS 129
Query: 127 GITTKDAALSVELGMRAVDLA 147
G D A S++L A+ +A
Sbjct: 130 GYWDIDHARSIDLVTTALQIA 150
|
Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 6 |
| >sp|Q18E61|RLME_HALWD Ribosomal RNA large subunit methyltransferase E OS=Haloquadratum walsbyi (strain DSM 16790) GN=rlmE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (248), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 24/177 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A++ GY RSA+KL QI + PG++V+DLG APG WLQVA +++GP
Sbjct: 5 DEYYNRAKQEGYRTRSAYKLQQIDADAGVFGPGNTVIDLGAAPGGWLQVAAEAVGP---S 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G+V+G+D ++++ L D V T+ D+ + + +V+LSDM P+++G
Sbjct: 62 GTVIGVDFQRIR--DLESDI-VDTIRGDMTDESTKNALRKRVNNSSVNVVLSDMAPNMTG 118
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ D A SV L +A +A + +L GG ++K+ + +D
Sbjct: 119 EYSVDHARSVHLARQAFSVA------------------TDILPAGGDFIVKVFDGRD 157
|
Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. Haloquadratum walsbyi (strain DSM 16790) (taxid: 362976) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 6 |
| >sp|Q9HN40|RLME_HALSA Ribosomal RNA large subunit methyltransferase E OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=rlmE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 92/179 (51%), Gaps = 24/179 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y ++++ GY +R+A+KL Q+ ++ ++ G+SV+DLG APG WLQVA + G
Sbjct: 6 DHYYNKSKQEGYRSRAAYKLQQLDDRFDVLFGGASVVDLGAAPGGWLQVAAERAGAR--- 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VVG+D + + DA ++TV D+ + Q R V++SDM P ++G
Sbjct: 63 GKVVGVDFQ--SITQFETDAGLETVRGDMTEDETRQ-RVRDAANGSADVVVSDMAPDMTG 119
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
D A SV L +A++ A +L GGH V+K+ + +D Q
Sbjct: 120 EYDLDHARSVHLARQALETA------------------RELLDAGGHFVVKVFDGRDFQ 160
|
Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) (taxid: 64091) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 6 |
| >sp|B0R7G3|RLME_HALS3 Ribosomal RNA large subunit methyltransferase E OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rlmE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 92/179 (51%), Gaps = 24/179 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y ++++ GY +R+A+KL Q+ ++ ++ G+SV+DLG APG WLQVA + G
Sbjct: 6 DHYYNKSKQEGYRSRAAYKLQQLDDRFDVLFGGASVVDLGAAPGGWLQVAAERAGAR--- 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VVG+D + + DA ++TV D+ + Q R V++SDM P ++G
Sbjct: 63 GKVVGVDFQ--SITQFETDAGLETVRGDMTEDETRQ-RVRDAANGSADVVVSDMAPDMTG 119
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
D A SV L +A++ A +L GGH V+K+ + +D Q
Sbjct: 120 EYDLDHARSVHLARQALETA------------------RELLDAGGHFVVKVFDGRDFQ 160
|
Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) (taxid: 478009) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 6 |
| >sp|Q8TR92|RLME_METAC Ribosomal RNA large subunit methyltransferase E OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rlmE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 99/177 (55%), Gaps = 34/177 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++Y +A+ GY +R++FKL QI +++ +IK G SV+DLG APG WLQVA Q +G
Sbjct: 7 DYYYHQAKEEGYRSRASFKLKQINEKHNVIKRGDSVVDLGAAPGGWLQVAKQL-----SG 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSN---QVRALSPKQKGFSVILSDMCPS 124
G V+G+D++++ P V+T+ D IN S +RA+ +KG V+L D P+
Sbjct: 62 GKVLGVDLQRI-API----EGVETIQGD-INADSTIKKIIRAVG--EKGADVVLCDAAPN 113
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+SG + D A S+EL A++ A +LKP G+ V+K+ +
Sbjct: 114 LSGNWSYDHARSIELTTSALECA------------------KKILKPKGNFVVKVFQ 152
|
Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) (taxid: 188937) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 6 |
| >sp|Q8PUP4|RLME_METMA Ribosomal RNA large subunit methyltransferase E OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=rlmE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 36/178 (20%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++Y +A+ GY +R++FKL QI +++ +IK G SV+DLG APG WLQVA Q +G
Sbjct: 7 DYYYHQAKEEGYRSRASFKLKQINEKHNVIKRGDSVVDLGAAPGGWLQVAKQL-----SG 61
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+G+D++++ V ++ D ++ +I + +KG V+L D P
Sbjct: 62 GKVLGVDLQRIDPIEGVETIQGDINAESTIKKIIKIVG---------EKGADVVLCDAAP 112
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG + D A S+EL A++ A +LKP G+ +K+ +
Sbjct: 113 NLSGNWSYDHARSIELATSALECA------------------KKILKPKGNFAVKVFQ 152
|
Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (taxid: 192952) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 186 | ||||||
| 255581527 | 228 | ftsj, putative [Ricinus communis] gi|223 | 1.0 | 0.815 | 0.791 | 6e-79 | |
| 449450030 | 238 | PREDICTED: ribosomal RNA large subunit m | 1.0 | 0.781 | 0.746 | 2e-77 | |
| 224112735 | 232 | predicted protein [Populus trichocarpa] | 0.989 | 0.793 | 0.756 | 1e-76 | |
| 225449466 | 233 | PREDICTED: ribosomal RNA large subunit m | 1.0 | 0.798 | 0.739 | 1e-75 | |
| 15240727 | 224 | FtsJ-like methyltransferase family prote | 0.994 | 0.825 | 0.756 | 3e-75 | |
| 297807411 | 229 | hypothetical protein ARALYDRAFT_325857 [ | 0.994 | 0.807 | 0.742 | 2e-74 | |
| 357492257 | 238 | Ribosomal RNA large subunit methyltransf | 0.983 | 0.768 | 0.715 | 1e-73 | |
| 356551705 | 221 | PREDICTED: ribosomal RNA large subunit m | 0.946 | 0.796 | 0.741 | 1e-70 | |
| 357123721 | 234 | PREDICTED: ribosomal RNA large subunit m | 0.989 | 0.786 | 0.668 | 3e-67 | |
| 414873670 | 232 | TPA: hypothetical protein ZEAMMB73_37532 | 0.983 | 0.788 | 0.651 | 1e-59 |
| >gi|255581527|ref|XP_002531569.1| ftsj, putative [Ricinus communis] gi|223528799|gb|EEF30805.1| ftsj, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 298 bits (763), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 152/192 (79%), Positives = 170/192 (88%), Gaps = 6/192 (3%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG GAPDFFYREAQRLGYVARSAFKLLQIQKQ+KLI PGSSVLDLGCAPGAWLQVACQS
Sbjct: 1 MSGAGAPDFFYREAQRLGYVARSAFKLLQIQKQHKLITPGSSVLDLGCAPGAWLQVACQS 60
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
LGPL NGGSVVGID+KKVKVP+ +CDARV+TV ADV+NLP +QVRALS +QKGFSV+LSD
Sbjct: 61 LGPLKNGGSVVGIDLKKVKVPNPYCDARVKTVCADVMNLPRDQVRALSLQQKGFSVVLSD 120
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASP--VNNSDSST----DSGVLKPGGH 174
MCP VSGITTKDAALS+ELGM+A+D+A+G AA A P N +D ST D+GVL+ GGH
Sbjct: 121 MCPPVSGITTKDAALSMELGMQALDIAIGGAASAHPDDENQNDDSTSGENDNGVLQAGGH 180
Query: 175 LVIKLLESQDAQ 186
LVIKLLES+D Q
Sbjct: 181 LVIKLLESEDIQ 192
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449450030|ref|XP_004142767.1| PREDICTED: ribosomal RNA large subunit methyltransferase E-like [Cucumis sativus] gi|449528435|ref|XP_004171210.1| PREDICTED: ribosomal RNA large subunit methyltransferase E-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 293 bits (750), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 147/197 (74%), Positives = 169/197 (85%), Gaps = 11/197 (5%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG GAPDFFYREAQRLGYVARSAFKLLQIQ Q+KLI GSSVLDLGCAPGAWLQVACQS
Sbjct: 1 MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQS 60
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
LGP NGGSV+GID+KKVKVP +HCD+RVQTVSADV+NLP +++++LSPK+KGFSVILSD
Sbjct: 61 LGPPRNGGSVLGIDIKKVKVPHMHCDSRVQTVSADVMNLPKSKLKSLSPKEKGFSVILSD 120
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALA----------SPVNNSDSSTD-SGVL 169
MCP VSGITT+DAALSVELGM+AV+LALG AAL V++S S++D GVL
Sbjct: 121 MCPLVSGITTRDAALSVELGMQAVNLALGEAALGVGDVIHGKDKDSVDDSTSASDCDGVL 180
Query: 170 KPGGHLVIKLLESQDAQ 186
+ GGHLV+KLLES+D Q
Sbjct: 181 RQGGHLVLKLLESEDTQ 197
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224112735|ref|XP_002316277.1| predicted protein [Populus trichocarpa] gi|222865317|gb|EEF02448.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 290 bits (743), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 146/193 (75%), Positives = 167/193 (86%), Gaps = 9/193 (4%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG G PDFFYREAQRLGYVARSAFKLLQIQK++KLI PGSSVLDLGCAPGAWLQVACQS
Sbjct: 1 MSGAGTPDFFYREAQRLGYVARSAFKLLQIQKKHKLIAPGSSVLDLGCAPGAWLQVACQS 60
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
LGPL NGG+VVGID+KKVKVP L+CD+RVQTV ADV+ LP NQVRALSP+QKGFSV+LSD
Sbjct: 61 LGPLKNGGAVVGIDLKKVKVPPLYCDSRVQTVCADVMKLPKNQVRALSPRQKGFSVVLSD 120
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALAS--------PVNNS-DSSTDSGVLKP 171
MCP VSGITT+DAALS ELGM+A+ LA+G AA A +N+S ++ D+G+L+P
Sbjct: 121 MCPLVSGITTRDAALSAELGMQALGLAVGRAATAHLDEIRTDRLLNDSVCTADDNGILQP 180
Query: 172 GGHLVIKLLESQD 184
GGHLVIKLLES+D
Sbjct: 181 GGHLVIKLLESED 193
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225449466|ref|XP_002283276.1| PREDICTED: ribosomal RNA large subunit methyltransferase E [Vitis vinifera] gi|296086215|emb|CBI31656.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 287 bits (734), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 145/196 (73%), Positives = 163/196 (83%), Gaps = 10/196 (5%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG G PDFFYREAQRLGY ARSAFKLLQ+QKQYKLIKPGSSVLDLGCAPGAWLQVACQS
Sbjct: 1 MSGAGTPDFFYREAQRLGYAARSAFKLLQMQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
LGPL NGG VVGID+KKVKVPS+HCD+RV+TV ADV+ LP +++RA SP++KGFSVILSD
Sbjct: 61 LGPLKNGGVVVGIDLKKVKVPSMHCDSRVKTVCADVMKLPKDEIRAFSPQRKGFSVILSD 120
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALA------SPVNNSDSST----DSGVLK 170
MCP VSGITTKDA LS ELGM+A+ LA+ ALA + D ST D G+L+
Sbjct: 121 MCPLVSGITTKDAVLSAELGMQALHLAVRGPALAPSGDEIQKGEHHDDSTSGPDDDGILQ 180
Query: 171 PGGHLVIKLLESQDAQ 186
PGGHLVIKLLES+DAQ
Sbjct: 181 PGGHLVIKLLESEDAQ 196
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240727|ref|NP_196887.1| FtsJ-like methyltransferase family protein [Arabidopsis thaliana] gi|5821280|dbj|BAA83750.1| FtsJ [Arabidopsis thaliana] gi|10177649|dbj|BAB11111.1| FtsJ [Arabidopsis thaliana] gi|332004564|gb|AED91947.1| FtsJ-like methyltransferase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 286 bits (731), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 143/189 (75%), Positives = 163/189 (86%), Gaps = 4/189 (2%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG G PDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS
Sbjct: 1 MSGAGVPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
LGPL +GG VVG+D+KKVKVP CD+RVQT++ADV+N P ++R LSP+Q GFSVILSD
Sbjct: 61 LGPLRSGGIVVGMDIKKVKVPP-QCDSRVQTIAADVLNFPRQKIRELSPQQLGFSVILSD 119
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSD---SSTDSGVLKPGGHLVI 177
MC SVSGITT+DAALS ELGMRA+DLA+G AA++ N+ D + + GVL+ GGHLVI
Sbjct: 120 MCHSVSGITTRDAALSAELGMRALDLAVGQAAISQSPNDDDGGPNESRPGVLRHGGHLVI 179
Query: 178 KLLESQDAQ 186
KLLES+DAQ
Sbjct: 180 KLLESEDAQ 188
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297807411|ref|XP_002871589.1| hypothetical protein ARALYDRAFT_325857 [Arabidopsis lyrata subsp. lyrata] gi|297317426|gb|EFH47848.1| hypothetical protein ARALYDRAFT_325857 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 144/194 (74%), Positives = 165/194 (85%), Gaps = 9/194 (4%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG G PDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS
Sbjct: 1 MSGAGVPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
LGPL +GG VVG+D+KKVKVP CD+RVQT++ADV+N P +R LSP+Q GFSVILSD
Sbjct: 61 LGPLKSGGIVVGMDIKKVKVPP-QCDSRVQTIAADVLNFPRQTIRELSPQQLGFSVILSD 119
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALA-SPVNNSD-------SSTDSGVLKPG 172
MC SVSGITT+DAALS ELGMRA+DLA+G AA++ SP +++D + + GVL+ G
Sbjct: 120 MCHSVSGITTRDAALSAELGMRALDLAVGQAAISQSPDDDNDGGDEVPSNESRRGVLRHG 179
Query: 173 GHLVIKLLESQDAQ 186
GHLVIKLLES+DAQ
Sbjct: 180 GHLVIKLLESEDAQ 193
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357492257|ref|XP_003616417.1| Ribosomal RNA large subunit methyltransferase E [Medicago truncatula] gi|355517752|gb|AES99375.1| Ribosomal RNA large subunit methyltransferase E [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 143/200 (71%), Positives = 162/200 (81%), Gaps = 17/200 (8%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
M+ GAPDFFY+EAQRLGYVARSAFKL+QIQKQ+KLIKPGSSVLDLGCAPG+WLQVACQS
Sbjct: 1 MAKSGAPDFFYKEAQRLGYVARSAFKLVQIQKQHKLIKPGSSVLDLGCAPGSWLQVACQS 60
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
LGP NGGSV+GID KKVKVP+ HCD+RV+TV+ADV+ LP Q+R LSPKQKGFSVILSD
Sbjct: 61 LGPFHNGGSVLGIDHKKVKVPTSHCDSRVKTVAADVMTLPKQQLRDLSPKQKGFSVILSD 120
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSST--------------DS 166
MCP VSGITTKDAALS ELGMRA+DLA+G A V NSD D
Sbjct: 121 MCPLVSGITTKDAALSFELGMRALDLAVGKVA---SVCNSDGDNLDEVKERCDPSGADDG 177
Query: 167 GVLKPGGHLVIKLLESQDAQ 186
G+L+ GGHLV+KLLES+DA+
Sbjct: 178 GLLRVGGHLVVKLLESEDAK 197
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356551705|ref|XP_003544214.1| PREDICTED: ribosomal RNA large subunit methyltransferase E-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 271 bits (692), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 135/182 (74%), Positives = 150/182 (82%), Gaps = 6/182 (3%)
Query: 5 GAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPL 64
G DFFY+EAQRLGYVARSAFKLLQIQ Q+K+I PGSS+LDLGCAPG WLQVACQSLGP
Sbjct: 5 GTADFFYKEAQRLGYVARSAFKLLQIQNQHKIISPGSSILDLGCAPGGWLQVACQSLGPF 64
Query: 65 DNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPS 124
GGSV+G+D KKVKVP LHCD+RVQT+SADV LP +++ALSPK+KGFSVILSDMCP
Sbjct: 65 RGGGSVLGVDTKKVKVPPLHCDSRVQTISADVTTLPHQRLKALSPKEKGFSVILSDMCPL 124
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
VSGITTKDAALS ELGMRA+DLALG P S GVLK GGHLVIKLLES+D
Sbjct: 125 VSGITTKDAALSFELGMRALDLALGSRIHLEP------SDCVGVLKVGGHLVIKLLESED 178
Query: 185 AQ 186
A+
Sbjct: 179 AK 180
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357123721|ref|XP_003563556.1| PREDICTED: ribosomal RNA large subunit methyltransferase E-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 259 bits (663), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 131/196 (66%), Positives = 155/196 (79%), Gaps = 12/196 (6%)
Query: 1 MSG-VGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQ 59
MSG G DFFYREAQRLGYVARSAFKL+QIQKQ+KLI PG++VLDLGCAPGAWLQVACQ
Sbjct: 1 MSGATGTADFFYREAQRLGYVARSAFKLIQIQKQHKLIAPGAAVLDLGCAPGAWLQVACQ 60
Query: 60 SLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILS 119
+LGPL+ GG V+G+DVKKVKVPS HCD+RV+TV ADV+ L Q RA+SP+++GFSVILS
Sbjct: 61 NLGPLEKGGVVIGLDVKKVKVPSAHCDSRVRTVCADVMALMKQQARAMSPQERGFSVILS 120
Query: 120 DMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNS------DSST-----DSGV 168
DMCP VSGITTKD A+S ELGMRA+ LA+G L + S SST + GV
Sbjct: 121 DMCPVVSGITTKDEAISCELGMRALSLAIGKIKLKESADYSITMEKFQSSTGPDPDEDGV 180
Query: 169 LKPGGHLVIKLLESQD 184
L+ GG+LVIK LE++D
Sbjct: 181 LRRGGNLVIKFLENED 196
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|414873670|tpg|DAA52227.1| TPA: hypothetical protein ZEAMMB73_375323 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 127/195 (65%), Positives = 154/195 (78%), Gaps = 12/195 (6%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
M+ G DFFYRE+QRLGYVARSAFKL+Q+QKQ+KLI PG++VLDLGCAPGAWLQVACQ+
Sbjct: 1 MAAGGTADFFYRESQRLGYVARSAFKLIQMQKQHKLIAPGAAVLDLGCAPGAWLQVACQN 60
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
LGPL+ GG VVG+DVKKVKVPS HCD+RV+TV ADV+ L Q RA+SP+++GFSVILSD
Sbjct: 61 LGPLEKGGIVVGVDVKKVKVPSAHCDSRVRTVCADVMTLMKRQARAMSPQERGFSVILSD 120
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDS-----------STDSGVL 169
MCP VSGITTKD A+S ELGMRA+ LA+G L N SD+ S + GVL
Sbjct: 121 MCPPVSGITTKDGAISCELGMRALSLAVGKIKLKDS-NYSDTLEKYLSSTEPESDEDGVL 179
Query: 170 KPGGHLVIKLLESQD 184
+ GG+LV+K LE++D
Sbjct: 180 RRGGNLVVKFLENED 194
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 186 | ||||||
| TAIR|locus:2159063 | 224 | AT5G13830 [Arabidopsis thalian | 0.994 | 0.825 | 0.756 | 2.9e-71 | |
| CGD|CAL0004884 | 293 | orf19.6751 [Candida albicans ( | 0.698 | 0.443 | 0.35 | 3.4e-17 | |
| TIGR_CMR|APH_0504 | 247 | APH_0504 "ribosomal RNA large | 0.709 | 0.534 | 0.347 | 1.6e-16 | |
| TIGR_CMR|CBU_1353 | 212 | CBU_1353 "ribosomal RNA large | 0.704 | 0.617 | 0.386 | 2.3e-16 | |
| UNIPROTKB|F1NZH9 | 240 | FTSJ2 "Uncharacterized protein | 0.720 | 0.558 | 0.380 | 4.7e-16 | |
| TIGR_CMR|CPS_3453 | 209 | CPS_3453 "ribosomal RNA large | 0.682 | 0.607 | 0.335 | 2.8e-15 | |
| UNIPROTKB|G4MS83 | 383 | MGG_04502 "Ribosomal RNA methy | 0.381 | 0.185 | 0.472 | 5.2e-15 | |
| WB|WBGene00009735 | 214 | F45G2.9 [Caenorhabditis elegan | 0.661 | 0.574 | 0.360 | 1.1e-14 | |
| UNIPROTKB|Q9KU87 | 209 | rlmE "Ribosomal RNA large subu | 0.682 | 0.607 | 0.321 | 1.5e-14 | |
| TIGR_CMR|VC_0636 | 209 | VC_0636 "cell division protein | 0.682 | 0.607 | 0.321 | 1.5e-14 |
| TAIR|locus:2159063 AT5G13830 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 143/189 (75%), Positives = 162/189 (85%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG G PDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS
Sbjct: 1 MSGAGVPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
LGPL +GG VVG+D+KKVKVP CD+RVQT++ADV+N P ++R LSP+Q GFSVILSD
Sbjct: 61 LGPLRSGGIVVGMDIKKVKVPP-QCDSRVQTIAADVLNFPRQKIRELSPQQLGFSVILSD 119
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDS---GVLKPGGHLVI 177
MC SVSGITT+DAALS ELGMRA+DLA+G AA++ N+ D + GVL+ GGHLVI
Sbjct: 120 MCHSVSGITTRDAALSAELGMRALDLAVGQAAISQSPNDDDGGPNESRPGVLRHGGHLVI 179
Query: 178 KLLESQDAQ 186
KLLES+DAQ
Sbjct: 180 KLLESEDAQ 188
|
|
| CGD|CAL0004884 orf19.6751 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 182 (69.1 bits), Expect = 3.4e-17, Sum P(2) = 3.4e-17
Identities = 49/140 (35%), Positives = 78/140 (55%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ G+ ARSAFKLLQ+ +++ L K + V+DL APG+W QV Q LGP D+
Sbjct: 10 DLYYRRAKEEGWRARSAFKLLQLNEEFNLFKDITRVVDLCAAPGSWSQVLSQKLGP-DS- 67
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ-VRALSPKQKGFSVILSDMCPSVS 126
++V +D++ P D V T+ AD+ + + Q +R + + SD P V+
Sbjct: 68 -TIVAVDLQ----PMTPIDG-VTTIQADITHPKTLQRIRDCFGGEPA-DFVCSDGAPDVT 120
Query: 127 GITTKDAALSVELGMRAVDL 146
G+ D + +L + A+ L
Sbjct: 121 GLHDLDEYIQSQLILSALQL 140
|
|
| TIGR_CMR|APH_0504 APH_0504 "ribosomal RNA large subunit methyltransferase J" [Anaplasma phagocytophilum HZ (taxid:212042)] | Back alignment and assigned GO terms |
|---|
Score = 182 (69.1 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 50/144 (34%), Positives = 79/144 (54%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + A++ GY +RSA+KL++I ++K+++ G VLDLG +PG W QVA ++ +D+
Sbjct: 56 DQYVSLAKKEGYRSRSAYKLIEINDKFKILQRGRFVLDLGSSPGGWAQVASKNTAIIDST 115
Query: 68 G-SVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKG--FSVILSDMCPS 124
+VV +D++ +K +H V V D+ + L+ K G F V+LSDM P
Sbjct: 116 EPTVVAVDIQSMK--DIH---NVSFVQCDI----DSDHDLLNEKLSGRKFDVVLSDMAPK 166
Query: 125 VSGITTKDAALSVELGMRAVDLAL 148
G D A + L A D+AL
Sbjct: 167 SCGHRQVDHANIINLCELARDIAL 190
|
|
| TIGR_CMR|CBU_1353 CBU_1353 "ribosomal RNA large subunit methyltransferase J" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 56/145 (38%), Positives = 85/145 (58%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + A++ GY +R+A+KLL+I ++YKL KP +V+DLG APG W QVA +GP
Sbjct: 14 DPYVKRAKKEGYPSRAAYKLLEIHQKYKLFKPSMNVIDLGAAPGGWSQVAKDLVGPK--- 70
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS--NQVRALSPKQK--G-FSVILSDMC 122
G V+ ID+ + + S+ D V + D N P NQ+ A+ K+ G +++SDM
Sbjct: 71 GVVIAIDL--LPMQSM-LD--VIFIQGD-FNEPEIFNQLEAIVAKKTLTGQVDLVISDMA 124
Query: 123 PSVSGITTKDAALSVELGMRAVDLA 147
P++SGI D + S+ L A D A
Sbjct: 125 PNISGIKNVDQSRSLHLVELAWDCA 149
|
|
| UNIPROTKB|F1NZH9 FTSJ2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 56/147 (38%), Positives = 83/147 (56%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQ---SLG-- 62
D F + A++ Y RSAFKLL+I + +++PG SVLD G APGAW QVA + +LG
Sbjct: 41 DPFVKAAKQQHYRCRSAFKLLEIDDKLHILRPGLSVLDCGAAPGAWSQVAVERVNALGTD 100
Query: 63 PLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ--VRALSPKQKGFSVILSD 120
P G V+G+D+ ++ P + V AD+ + P Q ++ L P +K VILSD
Sbjct: 101 PAAPTGFVIGVDLLRIS-P---LEGAVFLSQADITD-PGTQRAIQNLLPAEK-VDVILSD 154
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLA 147
M P+ +GI D + L + V+L+
Sbjct: 155 MAPNATGIKELDHQKLISLCLGLVNLS 181
|
|
| TIGR_CMR|CPS_3453 CPS_3453 "ribosomal RNA large subunit methyltransferase J" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 165 (63.1 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 48/143 (33%), Positives = 78/143 (54%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQRLG +R+ FKL +I + +LIKPG V+DLG APG W + A + +G +
Sbjct: 20 DEYVKKAQRLGLRSRAVFKLEEINIKDRLIKPGMKVVDLGAAPGGWSEYAVKVVG---DK 76
Query: 68 GSVVGIDVKK----VKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G VV D+ V V L D R + +V++ ++ K V++SDM
Sbjct: 77 GQVVACDILPMDAIVGVDFLEGDFREE----EVLDALLTRING-----KNIDVVMSDMAA 127
Query: 124 SVSGITTKDAALSVELGMRAVDL 146
+++G + D+A S+ L A+D+
Sbjct: 128 NMTGNESADSARSMYLVELALDM 150
|
|
| UNIPROTKB|G4MS83 MGG_04502 "Ribosomal RNA methyltransferase MRM2" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 167 (63.8 bits), Expect = 5.2e-15, Sum P(2) = 5.2e-15
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D+F REA+ G +R+AFKL+++ +Y+L K G V+DLG APG+W QVA + P G
Sbjct: 75 DYFAREAKVQGLKSRAAFKLIEMDSRYRLFKKGQLVVDLGYAPGSWSQVAMERTKP---G 131
Query: 68 GSVVGIDVKKVKVP 81
G V+GIDV + P
Sbjct: 132 GRVLGIDVIPAQPP 145
|
|
| WB|WBGene00009735 F45G2.9 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 48/133 (36%), Positives = 75/133 (56%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F +A+ Y ARSAFKL++I +++K +KP S+V+D+GCAPG+WLQV Q P
Sbjct: 21 DEFAVKAREHNYRARSAFKLIEINEKFKFLKPESTVIDIGCAPGSWLQVVVQKC-P---N 76
Query: 68 GSVVGIDVKKVKVPSLHCDA-RVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G G+D++ V +P D + ++ + L + L+ +Q V+LSDM P+ +
Sbjct: 77 GYASGVDLQNV-LPIRGADILSLSDITDPAVKLKIRE--KLAHRQ--VDVVLSDMAPNPT 131
Query: 127 GITTKDAALSVEL 139
G D +EL
Sbjct: 132 GDNATDHLRLIEL 144
|
|
| UNIPROTKB|Q9KU87 rlmE "Ribosomal RNA large subunit methyltransferase E" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 163 (62.4 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 46/143 (32%), Positives = 79/143 (55%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + EA++ GY +R+ FK+ +IQ + KL+K G +V+DLG APG W Q A + +G G
Sbjct: 20 DKYVNEAKKKGYRSRAIFKIEEIQNKDKLLKAGMTVVDLGAAPGGWSQFAAKVVG---EG 76
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ ++ V L D R + V +N ++++ P V++SDM P
Sbjct: 77 GRVIACDLLPMESIAGVSFLQGDFREEAV----LNALLDRIQ---PDM--VDVVMSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDL 146
+++G + D ++ L A+D+
Sbjct: 128 NMAGNLSVDQPRAMYLVELALDM 150
|
|
| TIGR_CMR|VC_0636 VC_0636 "cell division protein FtsJ" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 163 (62.4 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 46/143 (32%), Positives = 79/143 (55%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + EA++ GY +R+ FK+ +IQ + KL+K G +V+DLG APG W Q A + +G G
Sbjct: 20 DKYVNEAKKKGYRSRAIFKIEEIQNKDKLLKAGMTVVDLGAAPGGWSQFAAKVVG---EG 76
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ ++ V L D R + V +N ++++ P V++SDM P
Sbjct: 77 GRVIACDLLPMESIAGVSFLQGDFREEAV----LNALLDRIQ---PDM--VDVVMSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDL 146
+++G + D ++ L A+D+
Sbjct: 128 NMAGNLSVDQPRAMYLVELALDM 150
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.766 |
| 4th Layer | 2.1.1.166 | 0.824 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 186 | |||
| COG0293 | 205 | COG0293, FtsJ, 23S rRNA methylase [Translation, ri | 5e-38 | |
| pfam01728 | 177 | pfam01728, FtsJ, FtsJ-like methyltransferase | 2e-31 | |
| TIGR00438 | 188 | TIGR00438, rrmJ, cell division protein FtsJ | 4e-31 | |
| PRK11188 | 209 | PRK11188, rrmJ, 23S rRNA methyltransferase J; Prov | 1e-18 | |
| COG1189 | 245 | COG1189, COG1189, Predicted rRNA methylase [Transl | 1e-06 | |
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 0.001 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 0.002 | |
| TIGR00446 | 264 | TIGR00446, nop2p, NOL1/NOP2/sun family putative RN | 0.003 | |
| TIGR01983 | 224 | TIGR01983, UbiG, ubiquinone biosynthesis O-methylt | 0.003 |
| >gnl|CDD|223370 COG0293, FtsJ, 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 5e-38
Identities = 60/181 (33%), Positives = 91/181 (50%), Gaps = 34/181 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y++A++ GY +R+A+KLL++ +++KL KPG V+DLG APG W QVA + LG G
Sbjct: 14 DPYYKKAKKEGYRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGA---G 70
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G +V +D+ +K V L D + ++ V+LSDM P
Sbjct: 71 GKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEALGG---------APVDVVLSDMAP 121
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+ SG + D A S+ L A++ AL VLKPGG V K+ + +
Sbjct: 122 NTSGNRSVDHARSMYLCELALEFAL------------------EVLKPGGSFVAKVFQGE 163
Query: 184 D 184
D
Sbjct: 164 D 164
|
Length = 205 |
| >gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-31
Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 29/169 (17%)
Query: 19 YVARSAFKLLQIQKQYKL-IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKK 77
YV+R+A+KLL+I +++ L G +VLDLG APG + QV + G G VV +D+
Sbjct: 1 YVSRAAYKLLEIDERFGLKPGKGKTVLDLGAAPGGFSQVLLERGG----AGKVVAVDLGP 56
Query: 78 VKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSV 137
++ V + D+ + P + ++LSD P+VSGI D+ +S+
Sbjct: 57 MEPIQG-----VYFLRGDITD-PETLEKLRELLPGKVDLVLSDGAPNVSGIENTDSFISL 110
Query: 138 ELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
+L + A+ LAL VL+PGG+ V+K+ + +
Sbjct: 111 QLVLAALLLAL------------------EVLRPGGNFVVKVFKGFEFS 141
|
This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesised that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping. Length = 177 |
| >gnl|CDD|232976 TIGR00438, rrmJ, cell division protein FtsJ | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 4e-31
Identities = 59/178 (33%), Positives = 95/178 (53%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF+Y++A++ Y +R++FKLLQ+ +++KLIKPG +VLDLG APG W QVA + +G
Sbjct: 1 DFYYQKAKKEKYRSRASFKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVG---GK 57
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ +D++ +K V + D + V N++R K V++SD P
Sbjct: 58 GRVIAVDLQPMKPIENVDFIRGDFTDEEV--------LNKIRERVGDDK-VDVVMSDAAP 108
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D S++L A+D+A VLKP G+ V+K+ +
Sbjct: 109 NISGYWDIDHLRSIDLVELALDIA------------------KEVLKPKGNFVVKVFQ 148
|
Methylates the 23S rRNA. Previously known as cell division protein ftsJ.// Trusted cutoff too high? [SS 10/1/04] [Protein synthesis, tRNA and rRNA base modification]. Length = 188 |
| >gnl|CDD|183025 PRK11188, rrmJ, 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 1e-18
Identities = 59/182 (32%), Positives = 87/182 (47%), Gaps = 38/182 (20%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ G +R+ FKL +IQ+ KL KPG +V+DLG APG W Q A +G +
Sbjct: 20 DKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIG---DK 76
Query: 68 GSVVGIDVKK----VKVPSLHCDARVQTVSADVINLPSNQVRALSPK--QKGFSVILSDM 121
G V+ D+ V V L D R + V ++AL + V++SDM
Sbjct: 77 GRVIACDILPMDPIVGVDFLQGDFRDELV-----------LKALLERVGDSKVQVVMSDM 125
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P++SG D + M V+LAL D D VL PGG V+K+ +
Sbjct: 126 APNMSGTPAVDIPRA----MYLVELAL------------DMCRD--VLAPGGSFVVKVFQ 167
Query: 182 SQ 183
+
Sbjct: 168 GE 169
|
Length = 209 |
| >gnl|CDD|224110 COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-06
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 15/97 (15%)
Query: 19 YVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGS-VVGIDVKK 77
YV+R KL + ++++L G VLD+G + G + V L G V +DV
Sbjct: 59 YVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVL------LQRGAKHVYAVDVGY 112
Query: 78 VKV-PSLHCDARVQTVSADVINLPSNQVRALSPKQKG 113
++ L D R VI L VR L+P+
Sbjct: 113 GQLHWKLRNDPR-------VIVLERTNVRYLTPEDFT 142
|
Length = 245 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 0.001
Identities = 42/156 (26%), Positives = 54/156 (34%), Gaps = 59/156 (37%)
Query: 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGID-------VKKVKVPSLHCDARVQ 90
+PG VLDL C G +++G G VVG+D V + K+ L V+
Sbjct: 50 RPGDKVLDLACGTGDLAIALAKAVGK---TGEVVGLDFSEGMLAVGREKLRDLGLSGNVE 106
Query: 91 TVSADVINLP--SNQVRALSPKQKGFSVILSDMCPSVSGI---TTKDAALSVELGMRAVD 145
V D LP N A++ F G+ D AL E+ R
Sbjct: 107 FVQGDAEALPFPDNSFDAVT---IAF------------GLRNVPDIDKALR-EM-YR--- 146
Query: 146 LALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
VLKPGG LVI LE
Sbjct: 147 ----------------------VLKPGGRLVI--LE 158
|
Length = 239 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.002
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 23/86 (26%)
Query: 24 AFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL 83
F+LL +Q PG VLD+GC PG + + +GP G VVGID ++
Sbjct: 11 TFELLAVQ-------PGDRVLDVGCGPGNDARELARRVGP---EGRVVGIDRS----EAM 56
Query: 84 HCDAR---------VQTVSADVINLP 100
A+ V+ V D LP
Sbjct: 57 LALAKERAAGLGPNVEFVRGDADGLP 82
|
Length = 241 |
| >gnl|CDD|188051 TIGR00446, nop2p, NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Score = 37.1 bits (86), Expect = 0.003
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 14/140 (10%)
Query: 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCD-ARVQTVSADV 96
+ VLD+ APG Q + N G +V ++ K + +L + R+ ++ V
Sbjct: 70 REDERVLDMAAAPGGKTTQISQLM---KNKGCIVANEISKSRTKALISNINRMGVLNTIV 126
Query: 97 INLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASP 156
IN + A K F IL D S G+ KD + + + L
Sbjct: 127 INADGRKFGAYLLK---FDAILLDAPCSGEGVIRKDPSRKRNWSEEDI---KYCSLLQKE 180
Query: 157 VNNSDSSTDSGVLKPGGHLV 176
+ D++ D+ LKPGG LV
Sbjct: 181 L--IDAAIDA--LKPGGVLV 196
|
[Protein synthesis, tRNA and rRNA base modification]. Length = 264 |
| >gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.003
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 15/71 (21%)
Query: 16 RLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDV 75
RL Y+ I+K K + G VLD+GC G + + L G +V GID
Sbjct: 29 RLDYIRD------TIRKNKKPLF-GLRVLDVGCGGG----LLSEPLA--RLGANVTGIDA 75
Query: 76 KK--VKVPSLH 84
+ ++V LH
Sbjct: 76 SEENIEVAKLH 86
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 186 | |||
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 99.93 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 99.91 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.91 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 99.88 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.84 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 99.82 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 99.81 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.68 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.65 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.61 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.6 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.54 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.52 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.52 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.51 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.5 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.5 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.49 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.47 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.47 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.46 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.44 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.43 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.43 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.43 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.41 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.41 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.41 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.41 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.4 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.4 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 99.4 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.39 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.39 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.39 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.38 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.38 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.37 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.37 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.37 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.37 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.36 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.36 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.35 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.34 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.34 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.34 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.34 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 99.34 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.33 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.33 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.33 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.33 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.33 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.32 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.31 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.31 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.31 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.3 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.29 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.28 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.28 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.27 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.27 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.27 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.27 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.27 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.26 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.26 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.25 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.25 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.25 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.24 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.24 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.23 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.23 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.22 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.22 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.22 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.22 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.21 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.21 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.21 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.21 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.2 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.2 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.19 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.18 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.18 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.18 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.18 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.16 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.15 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.13 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.13 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.12 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.12 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.12 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.11 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.1 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.09 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.09 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.09 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.08 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.08 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.08 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.07 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.07 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.07 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.06 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.06 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.05 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.05 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.03 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 99.03 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.02 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 99.02 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.01 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.01 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.01 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.01 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.01 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.0 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.98 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.98 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.98 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.96 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 98.96 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.96 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.95 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.95 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.95 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.95 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.93 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 98.92 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.91 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.9 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.9 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.89 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.89 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.88 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.88 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.87 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.86 | |
| PLN02476 | 278 | O-methyltransferase | 98.86 | |
| PLN02366 | 308 | spermidine synthase | 98.83 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.83 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.81 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.81 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.81 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.8 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.79 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.78 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.76 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.75 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.75 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.72 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.7 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.7 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.7 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.7 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 98.7 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.69 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.69 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.68 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.66 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.65 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.64 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.63 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.62 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.61 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.6 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.6 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.58 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.55 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 98.55 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.55 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.53 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.52 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.46 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.46 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.45 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.45 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.43 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.42 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.41 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.4 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.39 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.37 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 98.37 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.35 | |
| PLN02823 | 336 | spermine synthase | 98.35 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.34 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.3 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.29 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.28 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.26 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.26 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.25 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.23 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.22 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.2 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.18 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.15 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.12 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.11 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.11 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.1 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.09 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.09 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 98.06 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.06 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.05 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.04 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.03 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.0 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.98 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 97.96 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.93 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.93 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.93 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.88 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.87 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.81 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.79 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.76 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.76 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.75 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 97.74 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.7 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.58 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 97.57 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 97.54 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.53 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.53 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.51 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.45 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.43 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 97.43 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.42 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.38 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.37 | |
| KOG3673 | 845 | consensus FtsJ-like RNA methyltransferase [RNA pro | 97.36 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.31 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.29 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.29 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.29 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.16 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.15 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.12 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.1 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.07 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.07 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 97.06 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 97.03 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 96.91 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.88 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 96.76 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 96.72 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 96.69 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.43 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.4 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 96.09 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 96.06 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 96.05 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 95.97 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 95.93 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 95.57 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 95.51 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 95.44 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 95.34 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 95.34 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 95.29 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 95.07 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 95.04 | |
| PF06460 | 299 | NSP13: Coronavirus NSP13; InterPro: IPR009461 This | 95.01 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 94.71 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.7 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 94.57 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 94.41 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 94.25 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 94.06 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 93.8 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 93.8 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 93.74 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 93.73 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 93.72 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 93.58 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 93.57 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 93.34 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 93.17 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 93.16 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 93.0 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 92.89 | |
| PF14314 | 675 | Methyltrans_Mon: Virus-capping methyltransferase | 92.79 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 92.59 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 92.56 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 92.49 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 92.41 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 92.4 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 92.17 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 92.14 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 92.07 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 91.65 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 91.59 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 91.55 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 91.37 | |
| PHA01634 | 156 | hypothetical protein | 91.24 | |
| PRK13699 | 227 | putative methylase; Provisional | 91.09 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 91.0 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 90.81 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 90.8 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 90.77 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 90.48 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 90.42 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 90.33 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 90.27 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 90.25 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 90.24 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 90.22 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 90.01 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 89.61 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 89.49 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 88.95 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 88.93 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 88.87 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 88.75 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 88.66 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 88.56 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 88.37 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 88.01 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 87.73 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 87.62 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 87.44 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 87.38 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 87.28 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 87.28 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 87.28 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 86.9 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 86.9 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 86.73 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 86.62 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 86.59 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 85.86 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 85.6 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 85.51 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 85.49 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 85.2 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 85.19 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 84.84 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 84.01 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 83.6 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 83.6 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 83.38 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 82.91 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 82.67 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 82.59 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 82.56 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 82.37 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 82.19 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 82.14 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 81.54 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 80.92 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 80.79 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 80.6 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 80.55 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 80.33 |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.3e-25 Score=175.70 Aligned_cols=155 Identities=38% Similarity=0.640 Sum_probs=138.5
Q ss_pred CCCCChHHHHHHhhchhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc
Q 038391 4 VGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL 83 (186)
Q Consensus 4 ~~~~~~~~~~~~~~~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~ 83 (186)
++..|+|+..++..+|++|++|||+|+.+.+..++++..|+||||.||+|++.+++..+. ++.|+|+|+.|-..-.
T Consensus 10 ~~~~D~Y~~~Ak~~gyRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~---~~~ivavDi~p~~~~~- 85 (205)
T COG0293 10 EHLRDPYYKKAKKEGYRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGA---GGKIVAVDILPMKPIP- 85 (205)
T ss_pred HhhcCHHHHHHhhccccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCC---CCcEEEEECcccccCC-
Confidence 467899999999999999999999999999999999999999999999999999999875 5679999999977443
Q ss_pred CCCCCeEEEEeeecCCCh-hhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCC
Q 038391 84 HCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDS 162 (186)
Q Consensus 84 ~~~~~~~~~~~d~~~~~~-~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (186)
++.++++|++.... ..|.+.. ....+|+|++||+|+.+|.+..|+..+..+...+++.+..
T Consensus 86 ----~V~~iq~d~~~~~~~~~l~~~l-~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~------------- 147 (205)
T COG0293 86 ----GVIFLQGDITDEDTLEKLLEAL-GGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALE------------- 147 (205)
T ss_pred ----CceEEeeeccCccHHHHHHHHc-CCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHH-------------
Confidence 49999999998763 3444443 2445799999999999999999999999999999999999
Q ss_pred CCCCcccccCcEEEEEEccCCCC
Q 038391 163 STDSGVLKPGGHLVIKLLESQDA 185 (186)
Q Consensus 163 ~~~~~~LkpgG~lvi~~~~~~~~ 185 (186)
+|+|||.++++.|.|+++
T Consensus 148 -----vL~~~G~fv~K~fqg~~~ 165 (205)
T COG0293 148 -----VLKPGGSFVAKVFQGEDF 165 (205)
T ss_pred -----eeCCCCeEEEEEEeCCCH
Confidence 999999999999999986
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-24 Score=167.26 Aligned_cols=154 Identities=34% Similarity=0.610 Sum_probs=134.6
Q ss_pred CCCCChHHHHHHhhchhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc
Q 038391 4 VGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL 83 (186)
Q Consensus 4 ~~~~~~~~~~~~~~~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~ 83 (186)
++..|+|...++..+||+|++|||+|+.+.|..++|+.+|||+||+||.|+....++.++ .+.|.|||+..-....
T Consensus 34 Rql~Dpy~kkAkv~NyR~RsAFKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p---~g~v~gVDllh~~p~~- 109 (232)
T KOG4589|consen 34 RQLKDPYVKKAKVQNYRSRSAFKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNP---NGMVLGVDLLHIEPPE- 109 (232)
T ss_pred HhccCHHHHHHHHhhhhhhhhhhheeehhhccccCCCCEEEEccCCCChHHHHHHHhhCC---CceEEEEeeeeccCCC-
Confidence 356799999999999999999999999999999999999999999999999999999865 7999999998866332
Q ss_pred CCCCCeEEEEe-eecCCCh-hhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCC
Q 038391 84 HCDARVQTVSA-DVINLPS-NQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSD 161 (186)
Q Consensus 84 ~~~~~~~~~~~-d~~~~~~-~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (186)
.++++++ |+++... ..|.+-. ++.++|+|++||.|+.+|....|+...++++..++..+..
T Consensus 110 ----Ga~~i~~~dvtdp~~~~ki~e~l-p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~------------ 172 (232)
T KOG4589|consen 110 ----GATIIQGNDVTDPETYRKIFEAL-PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALT------------ 172 (232)
T ss_pred ----CcccccccccCCHHHHHHHHHhC-CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhh------------
Confidence 4666766 7776543 2333333 5799999999999999999999999999999999999998
Q ss_pred CCCCCcccccCcEEEEEEccCCC
Q 038391 162 SSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 162 ~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
+++|+|.+++|+|.|++
T Consensus 173 ------~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 173 ------LLIPNGSFVCKLWDGSE 189 (232)
T ss_pred ------hcCCCcEEEEEEecCCc
Confidence 99999999999999986
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-23 Score=168.83 Aligned_cols=154 Identities=32% Similarity=0.478 Sum_probs=126.4
Q ss_pred CCCChHHHHHHhhchhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC
Q 038391 5 GAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH 84 (186)
Q Consensus 5 ~~~~~~~~~~~~~~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~ 84 (186)
+.+|+|+..++..+|++|+.+++.++...+..++++.+|||+|||||.++..+++..++ .++|+|||+++ |.
T Consensus 17 ~~~d~~~~~~~~~~~~~r~~~kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~---~~~V~aVDi~~-~~---- 88 (209)
T PRK11188 17 HFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGD---KGRVIACDILP-MD---- 88 (209)
T ss_pred hhcCHHHHHHhhcCCchhHHHhhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCC---CceEEEEeccc-cc----
Confidence 45799999999999999999999999999998899999999999999999999999764 57999999998 31
Q ss_pred CCCCeEEEEeeecCCCh-hhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCC
Q 038391 85 CDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSS 163 (186)
Q Consensus 85 ~~~~~~~~~~d~~~~~~-~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (186)
...+++++++|+.+... +.+.+-. ..++||+|++|++|+..+....+......+...++.++.+
T Consensus 89 ~~~~v~~i~~D~~~~~~~~~i~~~~-~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~-------------- 153 (209)
T PRK11188 89 PIVGVDFLQGDFRDELVLKALLERV-GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRD-------------- 153 (209)
T ss_pred CCCCcEEEecCCCChHHHHHHHHHh-CCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHH--------------
Confidence 12468999999987541 2221111 3578999999998888776655655555667789999998
Q ss_pred CCCcccccCcEEEEEEccCCCC
Q 038391 164 TDSGVLKPGGHLVIKLLESQDA 185 (186)
Q Consensus 164 ~~~~~LkpgG~lvi~~~~~~~~ 185 (186)
+|||||+|++++|.++++
T Consensus 154 ----~LkpGG~~vi~~~~~~~~ 171 (209)
T PRK11188 154 ----VLAPGGSFVVKVFQGEGF 171 (209)
T ss_pred ----HcCCCCEEEEEEecCcCH
Confidence 999999999999998874
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-22 Score=163.37 Aligned_cols=158 Identities=29% Similarity=0.521 Sum_probs=137.0
Q ss_pred CCCCCCCChHHHHHHhhchhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCC-CC-C---eEEEEeC
Q 038391 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLD-NG-G---SVVGIDV 75 (186)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~-~~-~---~v~gvDi 75 (186)
|+++..+|.||+.+++.+||+|++|||.++..+|..+..-.+++|||+.||.|+..+++++-... +. . .+++||+
T Consensus 3 ktskDKRDiYYRlAKe~gwRARSAFKLlqideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDL 82 (294)
T KOG1099|consen 3 KTSKDKRDIYYRLAKENGWRARSAFKLLQIDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDL 82 (294)
T ss_pred CccchhhHHHHHHHHhccchHHhHHHHhhhhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEec
Confidence 35677899999999999999999999999999999888889999999999999999998864211 11 1 3999999
Q ss_pred CCCC-CCCcCCCCCeEEEEeeecCCCh--hhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcc
Q 038391 76 KKVK-VPSLHCDARVQTVSADVINLPS--NQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAA 152 (186)
Q Consensus 76 s~~~-i~~~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (186)
++-. |+ .+..+++|+++... ..+++|. +.+.|+|+||++|+.+|+|.++.....+++..++.++..
T Consensus 83 Q~MaPI~------GV~qlq~DIT~~stae~Ii~hfg--gekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~--- 151 (294)
T KOG1099|consen 83 QPMAPIE------GVIQLQGDITSASTAEAIIEHFG--GEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATC--- 151 (294)
T ss_pred ccCCccC------ceEEeecccCCHhHHHHHHHHhC--CCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhh---
Confidence 8866 34 58899999998763 3455553 579999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 153 LASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 153 ~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
+|||||.||-|+|.|.+
T Consensus 152 ---------------Vlk~Gg~FVaKifRg~~ 168 (294)
T KOG1099|consen 152 ---------------VLKPGGSFVAKIFRGRD 168 (294)
T ss_pred ---------------eecCCCeeehhhhccCc
Confidence 99999999999999986
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-19 Score=142.54 Aligned_cols=150 Identities=38% Similarity=0.685 Sum_probs=121.6
Q ss_pred ChHHHHHHhhchhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCC
Q 038391 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDA 87 (186)
Q Consensus 8 ~~~~~~~~~~~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~ 87 (186)
|.||+.+..+.|+.|..+++.++...+..++++.+|||+|||+|.++..+++.+.. .++|+++|+++.+ ...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~---~~~v~~vDis~~~-----~~~ 72 (188)
T TIGR00438 1 DFYYQKAKKEKYRSRASFKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGG---KGRVIAVDLQPMK-----PIE 72 (188)
T ss_pred CHHHHHHhhcCCchhHHHHHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCC---CceEEEEeccccc-----cCC
Confidence 56888888888999999999999999999999999999999999999999988743 4689999999976 124
Q ss_pred CeEEEEeeecCCCh-hhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCC
Q 038391 88 RVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDS 166 (186)
Q Consensus 88 ~~~~~~~d~~~~~~-~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (186)
++.++++|+.+... ..+.+.. +.++||+|+++++++..+.+..++....+..+.++..+.+
T Consensus 73 ~i~~~~~d~~~~~~~~~l~~~~-~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~----------------- 134 (188)
T TIGR00438 73 NVDFIRGDFTDEEVLNKIRERV-GDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKE----------------- 134 (188)
T ss_pred CceEEEeeCCChhHHHHHHHHh-CCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHH-----------------
Confidence 57888888876431 1121111 3568999999988777788888877777777888999988
Q ss_pred cccccCcEEEEEEccCCC
Q 038391 167 GVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 167 ~~LkpgG~lvi~~~~~~~ 184 (186)
+|+|||++++..+..++
T Consensus 135 -~LkpgG~lvi~~~~~~~ 151 (188)
T TIGR00438 135 -VLKPKGNFVVKVFQGEE 151 (188)
T ss_pred -HccCCCEEEEEEccCcc
Confidence 99999999998877654
|
|
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-20 Score=166.81 Aligned_cols=158 Identities=41% Similarity=0.604 Sum_probs=134.2
Q ss_pred CCCCCCCChHHHHHHhhchhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCC
Q 038391 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKV 80 (186)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i 80 (186)
|++.+.+|.||+.+++.+|++|++|+|++++..|.++.++..||||||+||+|....++.++. ++-|+|||+-|-..
T Consensus 6 ~~gk~r~Dk~Y~lAke~GyrsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv---~slivGvDl~pikp 82 (780)
T KOG1098|consen 6 KSGKGRLDKYYRLAKELGYRSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPV---GSLIVGVDLVPIKP 82 (780)
T ss_pred cCCCccchHHHHHHHHhchhHHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCC---CceEEEeeeeeccc
Confidence 568899999999999999999999999999999999999999999999999999999999986 78999999999874
Q ss_pred CCcCCCCCeEEEEeeecCCC-hhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCC
Q 038391 81 PSLHCDARVQTVSADVINLP-SNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNN 159 (186)
Q Consensus 81 ~~~~~~~~~~~~~~d~~~~~-~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (186)
.. ++..++.|++... ...+.... ...+.|+|+.|++|+.++.|..++..+..+...++..+..
T Consensus 83 ~~-----~c~t~v~dIttd~cr~~l~k~l-~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~---------- 146 (780)
T KOG1098|consen 83 IP-----NCDTLVEDITTDECRSKLRKIL-KTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATE---------- 146 (780)
T ss_pred CC-----ccchhhhhhhHHHHHHHHHHHH-HhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHH----------
Confidence 43 3444445544221 11111111 1346799999999999999999999999999999999999
Q ss_pred CCCCCCCcccccCcEEEEEEccCCCC
Q 038391 160 SDSSTDSGVLKPGGHLVIKLLESQDA 185 (186)
Q Consensus 160 ~~~~~~~~~LkpgG~lvi~~~~~~~~ 185 (186)
.|+.||+++-++|.++|+
T Consensus 147 --------~l~~~g~fvtkvfrs~dy 164 (780)
T KOG1098|consen 147 --------FLAKGGTFVTKVFRSEDY 164 (780)
T ss_pred --------HHHhcCccccccccCCcc
Confidence 999999999999999986
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.7e-20 Score=145.02 Aligned_cols=141 Identities=42% Similarity=0.722 Sum_probs=106.6
Q ss_pred hhhhhHHhHHHHHHHcCCCCCC--CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeee
Q 038391 19 YVARSAFKLLQIQKQYKLIKPG--SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADV 96 (186)
Q Consensus 19 y~~r~~~~l~~~~~~~~~~~~~--~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~ 96 (186)
|++|+++||.|+...+..++++ .++||+||+||+|+..+.++.+. .++|+|+|+.+.... ..+.++++|+
T Consensus 1 yvsRa~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~---~~~v~avDl~~~~~~-----~~~~~i~~d~ 72 (181)
T PF01728_consen 1 YVSRAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGP---AGRVVAVDLGPMDPL-----QNVSFIQGDI 72 (181)
T ss_dssp SSSTHHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTT---EEEEEEEESSSTGS------TTEEBTTGGG
T ss_pred CCCHHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccc---cceEEEEeccccccc-----cceeeeeccc
Confidence 7899999999999999977664 89999999999999999998632 489999999988321 2455566666
Q ss_pred cCCCh-hhHhhhCC-CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcE
Q 038391 97 INLPS-NQVRALSP-KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGH 174 (186)
Q Consensus 97 ~~~~~-~~l~~~~~-~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~ 174 (186)
.+... ..+.+... ..+++|+|+||++++..+.+..++....++....+..+.. .|+|||.
T Consensus 73 ~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~------------------~L~~gG~ 134 (181)
T PF01728_consen 73 TNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALE------------------LLKPGGT 134 (181)
T ss_dssp EEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHH------------------HHCTTEE
T ss_pred chhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHh------------------hhcCCCE
Confidence 55422 22333221 2369999999999999999999999999999999999988 9999999
Q ss_pred EEEEEccCCCC
Q 038391 175 LVIKLLESQDA 185 (186)
Q Consensus 175 lvi~~~~~~~~ 185 (186)
+|+++|.+++.
T Consensus 135 ~v~K~~~~~~~ 145 (181)
T PF01728_consen 135 FVIKVFKGPEI 145 (181)
T ss_dssp EEEEESSSTTS
T ss_pred EEEEeccCccH
Confidence 99999998764
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-16 Score=129.29 Aligned_cols=136 Identities=26% Similarity=0.378 Sum_probs=99.0
Q ss_pred ChHHHHHHhhchhhhh-----HHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 8 DFFYREAQRLGYVARS-----AFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 8 ~~~~~~~~~~~y~~r~-----~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
+.|.+.++.++-.++- -..+.+.......+++|.+|||+|||||-++..+++..+ .++|+|+|+|+.|+..
T Consensus 15 ~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g----~g~v~~~D~s~~ML~~ 90 (238)
T COG2226 15 KVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG----TGEVVGLDISESMLEV 90 (238)
T ss_pred HHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC----CceEEEEECCHHHHHH
Confidence 5567777665433311 011222222222245899999999999999999999986 4899999999999765
Q ss_pred c------CCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCC
Q 038391 83 L------HCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASP 156 (186)
Q Consensus 83 ~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (186)
+ ....+++|+++|+.++++ ++++||.|.+. .++++... ...++.++.|
T Consensus 91 a~~k~~~~~~~~i~fv~~dAe~LPf--------~D~sFD~vt~~-----fglrnv~d------~~~aL~E~~R------- 144 (238)
T COG2226 91 AREKLKKKGVQNVEFVVGDAENLPF--------PDNSFDAVTIS-----FGLRNVTD------IDKALKEMYR------- 144 (238)
T ss_pred HHHHhhccCccceEEEEechhhCCC--------CCCccCEEEee-----ehhhcCCC------HHHHHHHHHH-------
Confidence 2 112238999999998875 47899999984 45555554 7789999999
Q ss_pred CCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 157 VNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 157 ~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
+|||||++++--+..++
T Consensus 145 -----------VlKpgG~~~vle~~~p~ 161 (238)
T COG2226 145 -----------VLKPGGRLLVLEFSKPD 161 (238)
T ss_pred -----------hhcCCeEEEEEEcCCCC
Confidence 99999999988776543
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.65 E-value=9e-17 Score=131.92 Aligned_cols=140 Identities=26% Similarity=0.397 Sum_probs=76.3
Q ss_pred CCCChHHHHHHhhchhhhh-HH----hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC
Q 038391 5 GAPDFFYREAQRLGYVARS-AF----KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK 79 (186)
Q Consensus 5 ~~~~~~~~~~~~~~y~~r~-~~----~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~ 79 (186)
.....|++.+..++..++- .+ .+..........++|.+|||+|||||.++..++++.++ .++|+|+|+|+.|
T Consensus 8 ~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~---~~~v~~vD~s~~M 84 (233)
T PF01209_consen 8 YVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGP---NGKVVGVDISPGM 84 (233)
T ss_dssp -----------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS------EEEEEES-HHH
T ss_pred HHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCC---ccEEEEecCCHHH
Confidence 3456777777775533221 00 11111111223578899999999999999999998764 5799999999999
Q ss_pred CCCc------CCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCccc
Q 038391 80 VPSL------HCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAAL 153 (186)
Q Consensus 80 i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (186)
+..+ ....+++++++|+.+++.+ +++||.|++. .+.++... ...++.++.|
T Consensus 85 L~~a~~k~~~~~~~~i~~v~~da~~lp~~--------d~sfD~v~~~-----fglrn~~d------~~~~l~E~~R---- 141 (233)
T PF01209_consen 85 LEVARKKLKREGLQNIEFVQGDAEDLPFP--------DNSFDAVTCS-----FGLRNFPD------RERALREMYR---- 141 (233)
T ss_dssp HHHHHHHHHHTT--SEEEEE-BTTB--S---------TT-EEEEEEE-----S-GGG-SS------HHHHHHHHHH----
T ss_pred HHHHHHHHHhhCCCCeeEEEcCHHHhcCC--------CCceeEEEHH-----hhHHhhCC------HHHHHHHHHH----
Confidence 8652 1234899999999888753 6899999983 34555433 5578899998
Q ss_pred CCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 154 ASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 154 ~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
+|||||+++|-.|+-++
T Consensus 142 --------------VLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 142 --------------VLKPGGRLVILEFSKPR 158 (233)
T ss_dssp --------------HEEEEEEEEEEEEEB-S
T ss_pred --------------HcCCCeEEEEeeccCCC
Confidence 99999999998876553
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.3e-15 Score=124.36 Aligned_cols=108 Identities=24% Similarity=0.397 Sum_probs=83.8
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC---------CCCCeEEEEeeecCCChhhHhh
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH---------CDARVQTVSADVINLPSNQVRA 106 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~---------~~~~~~~~~~d~~~~~~~~l~~ 106 (186)
.++++.+|||+|||+|.++..+++.+++ .++|+|+|+|+.|+..+. ...+++++++|+.+++.
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~---~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~----- 141 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVGS---DGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF----- 141 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC-----
Confidence 4678899999999999999999988653 479999999999976521 13478899999877653
Q ss_pred hCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 107 LSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 107 ~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
++++||+|++... .+.... ...++.++.+ +|||||++++..|..+
T Consensus 142 ---~~~sfD~V~~~~~-----l~~~~d------~~~~l~ei~r------------------vLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 142 ---DDCYFDAITMGYG-----LRNVVD------RLKAMQEMYR------------------VLKPGSRVSILDFNKS 186 (261)
T ss_pred ---CCCCEeEEEEecc-----cccCCC------HHHHHHHHHH------------------HcCcCcEEEEEECCCC
Confidence 3578999998543 232221 4578888888 9999999999887654
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-15 Score=108.72 Aligned_cols=103 Identities=26% Similarity=0.408 Sum_probs=77.1
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeee-cCCChhhHhhhCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADV-INLPSNQVRALSPK 110 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~-~~~~~~~l~~~~~~ 110 (186)
|+.+|||+|||+|.++..+++..+ +.+|+|+|+++.+++. .....+++++++|+ .... .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------~ 67 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP----GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD---------F 67 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT----TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT---------T
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC----CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc---------c
Confidence 578999999999999999999654 5899999999999754 24567999999998 2222 2
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
..+||+|++.. . ..+.... .+....+++.+.+ .|+|||+|+|..
T Consensus 68 ~~~~D~v~~~~-~---~~~~~~~---~~~~~~~l~~~~~------------------~L~pgG~lvi~~ 111 (112)
T PF12847_consen 68 LEPFDLVICSG-F---TLHFLLP---LDERRRVLERIRR------------------LLKPGGRLVINT 111 (112)
T ss_dssp SSCEEEEEECS-G---SGGGCCH---HHHHHHHHHHHHH------------------HEEEEEEEEEEE
T ss_pred CCCCCEEEECC-C---ccccccc---hhHHHHHHHHHHH------------------hcCCCcEEEEEE
Confidence 46799999943 0 1111111 1445677777777 999999999974
|
... |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.9e-14 Score=116.58 Aligned_cols=103 Identities=22% Similarity=0.316 Sum_probs=77.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC-CCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC-DARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~-~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
.++.+|||+|||+|.++..+++. +.+|+++|+++.|+..+.. .....++++|+..++. ++++||+
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~--------~~~~fD~ 106 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRER------GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPL--------ATATFDL 106 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHc------CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcC--------CCCcEEE
Confidence 45689999999999999988875 5799999999999765322 1235677888866542 3568999
Q ss_pred EEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 117 V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
|+++.. ..|..+ ...++.++.+ +|||||.+++..+...
T Consensus 107 V~s~~~----l~~~~d-------~~~~l~~~~~------------------~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 107 AWSNLA----VQWCGN-------LSTALRELYR------------------VVRPGGVVAFTTLVQG 144 (251)
T ss_pred EEECch----hhhcCC-------HHHHHHHHHH------------------HcCCCeEEEEEeCCCC
Confidence 999653 223333 4567788887 9999999999987653
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.2e-14 Score=119.81 Aligned_cols=102 Identities=25% Similarity=0.370 Sum_probs=79.9
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
+++.+|||+|||+|.++..+++.+ +.+|+|+|+++.++..+ ....+++++++|+.+.+. +
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-----g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~--------~ 183 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-----GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF--------E 183 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-----CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC--------C
Confidence 678899999999999999999986 47999999999987541 233578999999877643 3
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+++||+|++.. ...|..+ ...++.++.+ +|||||+|+|..+.
T Consensus 184 ~~~FD~V~s~~----~~~h~~d-------~~~~l~e~~r------------------vLkpGG~lvi~~~~ 225 (340)
T PLN02244 184 DGQFDLVWSME----SGEHMPD-------KRKFVQELAR------------------VAAPGGRIIIVTWC 225 (340)
T ss_pred CCCccEEEECC----chhccCC-------HHHHHHHHHH------------------HcCCCcEEEEEEec
Confidence 57999999854 2233333 4467888888 99999999998764
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-13 Score=111.86 Aligned_cols=107 Identities=23% Similarity=0.414 Sum_probs=79.3
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.++++.+|||+|||+|.++..+++.+++ +++|+|+|+++.+++.+ ....+++++++|+...+.
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-------- 110 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGP---EGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPF-------- 110 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCC--------
Confidence 3577899999999999999999998754 57999999999986541 122478888898866532
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
+.++||+|+++... .+..+ ....+.++.+ +|+|||.+++.....
T Consensus 111 ~~~~fD~V~~~~~l----~~~~~-------~~~~l~~~~~------------------~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 111 DDNSFDYVTIGFGL----RNVPD-------YMQVLREMYR------------------VVKPGGKVVCLETSQ 154 (231)
T ss_pred CCCCccEEEEeccc----ccCCC-------HHHHHHHHHH------------------HcCcCeEEEEEECCC
Confidence 35789999985421 12222 3357777777 999999999866543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.4e-14 Score=115.79 Aligned_cols=102 Identities=18% Similarity=0.266 Sum_probs=78.0
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
..++.+|||+|||+|.++..+++.++ +.+|+|+|+|+.|+..+.. .+++++++|+.++. +.++||+
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p----~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~---------~~~~fD~ 92 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWP----GAVIEALDSSPEMVAAARE-RGVDARTGDVRDWK---------PKPDTDV 92 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCC---------CCCCceE
Confidence 46788999999999999999999864 4799999999999876433 25788888876542 2468999
Q ss_pred EEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 117 V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
|+++.. ..|..+ ...++..+.+ .|||||.+++.++.
T Consensus 93 v~~~~~----l~~~~d-------~~~~l~~~~~------------------~LkpgG~l~~~~~~ 128 (255)
T PRK14103 93 VVSNAA----LQWVPE-------HADLLVRWVD------------------ELAPGSWIAVQVPG 128 (255)
T ss_pred EEEehh----hhhCCC-------HHHHHHHHHH------------------hCCCCcEEEEEcCC
Confidence 999653 223333 3467777777 99999999998643
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.7e-14 Score=117.60 Aligned_cols=122 Identities=26% Similarity=0.318 Sum_probs=86.1
Q ss_pred hhhhhHH--hHHHHHHH-cC--CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCC----CCcCCCCCe
Q 038391 19 YVARSAF--KLLQIQKQ-YK--LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKV----PSLHCDARV 89 (186)
Q Consensus 19 y~~r~~~--~l~~~~~~-~~--~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i----~~~~~~~~~ 89 (186)
||.+.++ ||...+.. .. .++++.+|||+|||+|.+++++++.+++ .++|+++|+++.++ ..+....++
T Consensus 107 yR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~---~G~VyAVD~s~r~~~dLl~~ak~r~NI 183 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGP---EGVVYAVEFSHRSGRDLTNMAKKRPNI 183 (293)
T ss_pred eeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCC---CCEEEEEECcHHHHHHHHHHhhhcCCC
Confidence 6666655 67754422 22 3689999999999999999999999875 57999999998753 333334678
Q ss_pred EEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCccc
Q 038391 90 QTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVL 169 (186)
Q Consensus 90 ~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 169 (186)
.++..|+..... +.. ...+||+|++|+. .+++ ...++.++.+ +|
T Consensus 184 ~~I~~Da~~p~~--y~~---~~~~vDvV~~Dva-------~pdq------~~il~~na~r------------------~L 227 (293)
T PTZ00146 184 VPIIEDARYPQK--YRM---LVPMVDVIFADVA-------QPDQ------ARIVALNAQY------------------FL 227 (293)
T ss_pred EEEECCccChhh--hhc---ccCCCCEEEEeCC-------Ccch------HHHHHHHHHH------------------hc
Confidence 899998764321 111 1347999999873 1222 4455666777 99
Q ss_pred ccCcEEEEEE
Q 038391 170 KPGGHLVIKL 179 (186)
Q Consensus 170 kpgG~lvi~~ 179 (186)
||||.|+|++
T Consensus 228 KpGG~~vI~i 237 (293)
T PTZ00146 228 KNGGHFIISI 237 (293)
T ss_pred cCCCEEEEEE
Confidence 9999999953
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-13 Score=122.19 Aligned_cols=117 Identities=24% Similarity=0.334 Sum_probs=87.7
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
+++|.+|||+|||+|+.|.++++.+++ +++|+++|+++.++... ....++.++++|...+... .
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~---~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~-------~ 304 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKD---QGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEY-------V 304 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCC---CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhh-------h
Confidence 578999999999999999999999865 58999999999997541 1123577888887654311 1
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHH-----------HHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSV-----------ELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
.++||.|++|++|+..|....+..... .+....+..+.+ .|||||+|+..+
T Consensus 305 ~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~------------------~LkpGG~LvYsT 366 (431)
T PRK14903 305 QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWK------------------LLEKGGILLYST 366 (431)
T ss_pred hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHH------------------hcCCCCEEEEEE
Confidence 458999999999988887554433222 234566666666 999999999887
Q ss_pred cc
Q 038391 180 LE 181 (186)
Q Consensus 180 ~~ 181 (186)
-.
T Consensus 367 Cs 368 (431)
T PRK14903 367 CT 368 (431)
T ss_pred CC
Confidence 54
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-13 Score=114.83 Aligned_cols=115 Identities=26% Similarity=0.288 Sum_probs=85.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
+++|.+|||+|||+|+++..+++.+++ .++|+++|+++.++.. .....++.+++.|...... .
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~---~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~--------~ 137 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKN---EGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGA--------A 137 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCC---CCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhh--------h
Confidence 578999999999999999999999865 5799999999999654 1122357777787654321 1
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHH-----------HHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSV-----------ELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
.++||.|++|++|+..|....+..... .+....+..+.+ +|||||+|+..+
T Consensus 138 ~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~------------------~lkpgG~lvYst 199 (264)
T TIGR00446 138 VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFD------------------ALKPGGVLVYST 199 (264)
T ss_pred ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHH------------------hcCCCCEEEEEe
Confidence 346999999999988887655543321 233456666666 999999999775
Q ss_pred c
Q 038391 180 L 180 (186)
Q Consensus 180 ~ 180 (186)
-
T Consensus 200 c 200 (264)
T TIGR00446 200 C 200 (264)
T ss_pred C
Confidence 3
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.2e-13 Score=120.94 Aligned_cols=118 Identities=25% Similarity=0.279 Sum_probs=86.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
+++|.+|||+|||+|+++.++++.+++ .++|+++|+++.++... ....+++++++|+...... ....
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~---~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~----~~~~ 322 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGD---QGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLEL----KPQW 322 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCC---CceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccc----cccc
Confidence 577899999999999999999999864 57999999999987541 1223588888887654311 0002
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHH-----------HHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSV-----------ELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
.++||.|++|++|+..|....+..... .+....+..+.+ +|||||+||..+
T Consensus 323 ~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~------------------~lkpgG~lvyst 384 (434)
T PRK14901 323 RGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAP------------------LLKPGGTLVYAT 384 (434)
T ss_pred cccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHH------------------hcCCCCEEEEEe
Confidence 468999999999988776544333222 224566777777 999999999765
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4e-13 Score=110.90 Aligned_cols=103 Identities=20% Similarity=0.365 Sum_probs=78.5
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-CCCCeEEEEeeecCCChhhHhhhCCCCCCcc
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-CDARVQTVSADVINLPSNQVRALSPKQKGFS 115 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D 115 (186)
++++.+|||+|||+|.++..+++..+ +.+|+|+|+++.|+..+. ...++.++.+|+.... +..+||
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~----~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~---------~~~~fD 95 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWP----AARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ---------PPQALD 95 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC---------CCCCcc
Confidence 56788999999999999999999864 479999999999986532 2346788888876442 245899
Q ss_pred EEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 116 VILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 116 ~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+|+++... .|..+ ....+..+.+ .|||||.+++.+..
T Consensus 96 ~v~~~~~l----~~~~d-------~~~~l~~~~~------------------~LkpgG~~~~~~~~ 132 (258)
T PRK01683 96 LIFANASL----QWLPD-------HLELFPRLVS------------------LLAPGGVLAVQMPD 132 (258)
T ss_pred EEEEccCh----hhCCC-------HHHHHHHHHH------------------hcCCCcEEEEECCC
Confidence 99997532 23323 3467777887 99999999997643
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-13 Score=105.31 Aligned_cols=105 Identities=26% Similarity=0.496 Sum_probs=78.2
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
+++.+|||+|||+|.++..+++...+ +.+++|+|+++.|+..+ ....+++|+++|+.+++.. + +
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~---~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~-----~- 71 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNP---GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-L-----E- 71 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTT---TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-S-----S-
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCC---CCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc-c-----C-
Confidence 46789999999999999999965443 68999999999997652 2234899999999875311 1 1
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
++||+|+++... .+..+ ...+++.+.+ .|+++|.+++..+.
T Consensus 72 ~~~D~I~~~~~l----~~~~~-------~~~~l~~~~~------------------~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 72 EKFDIIISNGVL----HHFPD-------PEKVLKNIIR------------------LLKPGGILIISDPN 112 (152)
T ss_dssp TTEEEEEEESTG----GGTSH-------HHHHHHHHHH------------------HEEEEEEEEEEEEE
T ss_pred CCeeEEEEcCch----hhccC-------HHHHHHHHHH------------------HcCCCcEEEEEECC
Confidence 689999996431 22222 4467777777 99999999998765
|
... |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.3e-13 Score=118.37 Aligned_cols=115 Identities=28% Similarity=0.373 Sum_probs=86.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
+.+|.+|||+|||+|+++.++++.++. +++|+++|+++.++... ....+++++++|+.... +
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~---~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~---------~ 315 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQN---RGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS---------P 315 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCC---CcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc---------c
Confidence 467899999999999999999998764 57999999999997541 11235788888876543 2
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHH-----------HHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALS-----------VELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
..+||.|++|++|+..|....+.... .......+..+.+ +|||||+|+..+
T Consensus 316 ~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~------------------~lkpgG~lvyst 377 (445)
T PRK14904 316 EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAAS------------------LLKPGGVLVYAT 377 (445)
T ss_pred CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHH------------------hcCCCcEEEEEe
Confidence 45899999999998887754332211 1233456777777 999999999887
Q ss_pred cc
Q 038391 180 LE 181 (186)
Q Consensus 180 ~~ 181 (186)
..
T Consensus 378 cs 379 (445)
T PRK14904 378 CS 379 (445)
T ss_pred CC
Confidence 54
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.7e-13 Score=109.77 Aligned_cols=112 Identities=17% Similarity=0.195 Sum_probs=79.7
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCC
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINL 99 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~ 99 (186)
+.+++.... .++.+|||+|||+|.++..+++. +.+|+|+|+++.|+..+ ....+++++++|+.++
T Consensus 34 ~~~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~------g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l 105 (255)
T PRK11036 34 LDRLLAELP--PRPLRVLDAGGGEGQTAIKLAEL------GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDI 105 (255)
T ss_pred HHHHHHhcC--CCCCEEEEeCCCchHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHH
Confidence 334444433 45679999999999999999987 57999999999997652 2235688888887654
Q ss_pred ChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 100 PSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 100 ~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
... ..++||+|++... ..+..+ ...++..+.+ +|||||++++..
T Consensus 106 ~~~-------~~~~fD~V~~~~v----l~~~~~-------~~~~l~~~~~------------------~LkpgG~l~i~~ 149 (255)
T PRK11036 106 AQH-------LETPVDLILFHAV----LEWVAD-------PKSVLQTLWS------------------VLRPGGALSLMF 149 (255)
T ss_pred hhh-------cCCCCCEEEehhH----HHhhCC-------HHHHHHHHHH------------------HcCCCeEEEEEE
Confidence 311 3578999998432 111222 3467777887 999999999876
Q ss_pred ccC
Q 038391 180 LES 182 (186)
Q Consensus 180 ~~~ 182 (186)
+..
T Consensus 150 ~n~ 152 (255)
T PRK11036 150 YNA 152 (255)
T ss_pred ECc
Confidence 653
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-13 Score=95.35 Aligned_cols=92 Identities=33% Similarity=0.517 Sum_probs=69.1
Q ss_pred EEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC---cCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeC
Q 038391 44 LDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS---LHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120 (186)
Q Consensus 44 LDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~---~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d 120 (186)
||+|||+|..+..+++. + +.+|+|+|+++.++.. .....++.+.++|+.+++. ++++||+|++.
T Consensus 1 LdiG~G~G~~~~~l~~~-~----~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~--------~~~sfD~v~~~ 67 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G----GASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPF--------PDNSFDVVFSN 67 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T----TCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS---------TT-EEEEEEE
T ss_pred CEecCcCCHHHHHHHhc-c----CCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCcc--------ccccccccccc
Confidence 89999999999999998 3 5899999999998755 2234556688899887764 36899999994
Q ss_pred CCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
.. .+.. +....+++++.| +|||||+++|
T Consensus 68 ~~-----~~~~------~~~~~~l~e~~r------------------vLk~gG~l~~ 95 (95)
T PF08241_consen 68 SV-----LHHL------EDPEAALREIYR------------------VLKPGGRLVI 95 (95)
T ss_dssp SH-----GGGS------SHHHHHHHHHHH------------------HEEEEEEEEE
T ss_pred cc-----eeec------cCHHHHHHHHHH------------------HcCcCeEEeC
Confidence 32 2222 226788889998 9999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-13 Score=111.14 Aligned_cols=118 Identities=19% Similarity=0.248 Sum_probs=89.1
Q ss_pred hhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-CCCCCeEEEEeeec
Q 038391 19 YVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-HCDARVQTVSADVI 97 (186)
Q Consensus 19 y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-~~~~~~~~~~~d~~ 97 (186)
-|.|.+..|...+. +....+|.|||||+|..|..++++++ +..++|+|-|+.|++++ ..-.+++|.++|+.
T Consensus 14 eRtRPa~dLla~Vp----~~~~~~v~DLGCGpGnsTelL~~RwP----~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~ 85 (257)
T COG4106 14 ERTRPARDLLARVP----LERPRRVVDLGCGPGNSTELLARRWP----DAVITGIDSSPAMLAKAAQRLPDATFEEADLR 85 (257)
T ss_pred hccCcHHHHHhhCC----ccccceeeecCCCCCHHHHHHHHhCC----CCeEeeccCCHHHHHHHHHhCCCCceecccHh
Confidence 46666665554333 34567999999999999999999996 69999999999999884 34578999999987
Q ss_pred CCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 98 NLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 98 ~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
... +...+|++++|+ ..+|..+| ..-+.. ... .|.|||.|.+
T Consensus 86 ~w~---------p~~~~dllfaNA----vlqWlpdH------~~ll~r-L~~------------------~L~Pgg~LAV 127 (257)
T COG4106 86 TWK---------PEQPTDLLFANA----VLQWLPDH------PELLPR-LVS------------------QLAPGGVLAV 127 (257)
T ss_pred hcC---------CCCccchhhhhh----hhhhcccc------HHHHHH-HHH------------------hhCCCceEEE
Confidence 664 456899999986 45666665 222222 222 7999999999
Q ss_pred EEccC
Q 038391 178 KLLES 182 (186)
Q Consensus 178 ~~~~~ 182 (186)
++-..
T Consensus 128 QmPdN 132 (257)
T COG4106 128 QMPDN 132 (257)
T ss_pred ECCCc
Confidence 98654
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-12 Score=106.30 Aligned_cols=104 Identities=24% Similarity=0.258 Sum_probs=76.4
Q ss_pred CCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 35 KLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
..++++.+|||+|||+|.++..+++.++ .++|+|+|+++.|++. +....++.++.+|+.+.... ..+
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~----~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~--~~l--- 138 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE----EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERY--AHV--- 138 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC----CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchh--hhc---
Confidence 3478999999999999999999999874 3799999999988653 23335788889988653110 011
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
..+||+|+++++ ..+ ....++.++.+ +|||||.++|.
T Consensus 139 ~~~~D~i~~d~~-------~p~------~~~~~L~~~~r------------------~LKpGG~lvI~ 175 (226)
T PRK04266 139 VEKVDVIYQDVA-------QPN------QAEIAIDNAEF------------------FLKDGGYLLLA 175 (226)
T ss_pred cccCCEEEECCC-------Chh------HHHHHHHHHHH------------------hcCCCcEEEEE
Confidence 246999998753 111 12346778887 99999999995
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-13 Score=111.71 Aligned_cols=105 Identities=26% Similarity=0.348 Sum_probs=72.9
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEE
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~ 118 (186)
+|.+|||+|||-|.++..+|+. |.+|+|+|+++.+|..++....-+-+..|.... .++++...+++||+|+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~------Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~---~~edl~~~~~~FDvV~ 129 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL------GASVTGIDASEKPIEVAKLHALESGVNIDYRQA---TVEDLASAGGQFDVVT 129 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC------CCeeEEecCChHHHHHHHHhhhhccccccchhh---hHHHHHhcCCCccEEE
Confidence 7899999999999999999998 789999999999987644222111222222211 2233333358999999
Q ss_pred eCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 119 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
|.- ...|-.+ .+.++..+.+ ++||||.+++++.+
T Consensus 130 cmE----VlEHv~d-------p~~~~~~c~~------------------lvkP~G~lf~STin 163 (243)
T COG2227 130 CME----VLEHVPD-------PESFLRACAK------------------LVKPGGILFLSTIN 163 (243)
T ss_pred Ehh----HHHccCC-------HHHHHHHHHH------------------HcCCCcEEEEeccc
Confidence 931 1123333 4567777887 99999999999875
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-12 Score=116.08 Aligned_cols=116 Identities=22% Similarity=0.275 Sum_probs=83.6
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
+.+|.+|||+|||+|+++..+++.++ +++|+++|+++.++... ....+++++++|+.+.... . ..
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~----~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~-----~-~~ 311 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAP----QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQW-----W-DG 311 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcC----CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhh-----c-cc
Confidence 57889999999999999999999863 37999999999997541 1222467888888754211 0 24
Q ss_pred CCccEEEeCCCCCCCCCcccchH-----------HHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 112 KGFSVILSDMCPSVSGITTKDAA-----------LSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
.+||.|++|++|+..|....+.. .........+..+.+ +|||||+|++.+-
T Consensus 312 ~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~------------------~LkpGG~lvystc 373 (427)
T PRK10901 312 QPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWP------------------LLKPGGTLLYATC 373 (427)
T ss_pred CCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHH------------------hcCCCCEEEEEeC
Confidence 68999999999877665322211 112334567777777 9999999997763
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-12 Score=115.47 Aligned_cols=118 Identities=21% Similarity=0.247 Sum_probs=82.9
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
+++|.+|||+|||+|+++..+++.++ .++|+++|+++.++... .....+.+..+|....... .
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~----~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~------~ 305 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAP----QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW------A 305 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcC----CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc------c
Confidence 57789999999999999999999875 37999999999996541 1111233345554433210 0
Q ss_pred CCCCccEEEeCCCCCCCCCcccchH-----------HHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAA-----------LSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
...+||.|++|++|+..|.....+. ....+....+..+.+ +|||||+|+..
T Consensus 306 ~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~------------------~LkpgG~lvys 367 (426)
T TIGR00563 306 ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWP------------------LLKTGGTLVYA 367 (426)
T ss_pred cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHH------------------hcCCCcEEEEE
Confidence 2468999999999988876433222 122345567777777 99999999988
Q ss_pred EccC
Q 038391 179 LLES 182 (186)
Q Consensus 179 ~~~~ 182 (186)
+.+-
T Consensus 368 tcs~ 371 (426)
T TIGR00563 368 TCSV 371 (426)
T ss_pred eCCC
Confidence 7643
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.8e-12 Score=93.39 Aligned_cols=101 Identities=17% Similarity=0.278 Sum_probs=74.6
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
++++.+|||+|||+|.++..+++.++ +.+|+++|+++.++... ....+++++.+|+...... .
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 85 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVP----NGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED-------S 85 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCC----CceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh-------h
Confidence 56678999999999999999999874 47999999999986541 1224677777776532111 1
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
..+||.|++... .. .....++.+.+ .|||||+|++...
T Consensus 86 ~~~~D~v~~~~~--------~~------~~~~~l~~~~~------------------~Lk~gG~li~~~~ 123 (124)
T TIGR02469 86 LPEPDRVFIGGS--------GG------LLQEILEAIWR------------------RLRPGGRIVLNAI 123 (124)
T ss_pred cCCCCEEEECCc--------ch------hHHHHHHHHHH------------------HcCCCCEEEEEec
Confidence 358999998542 11 13467888888 9999999999864
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=1e-12 Score=112.68 Aligned_cols=102 Identities=17% Similarity=0.266 Sum_probs=76.2
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-------CCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-------CDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-------~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
.++.+|||+|||+|.++..+++. +.+|+|||+++.++..++ ...+++++++|+.+++. .
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~------g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~--------~ 195 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM------GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD--------E 195 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh--------c
Confidence 35679999999999999999875 579999999999976521 12368888888765432 2
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
.++||+|++.. ...|..+ ...++..+.+ +|||||.++|.+++.
T Consensus 196 ~~~FD~Vi~~~----vLeHv~d-------~~~~L~~l~r------------------~LkPGG~liist~nr 238 (322)
T PLN02396 196 GRKFDAVLSLE----VIEHVAN-------PAEFCKSLSA------------------LTIPNGATVLSTINR 238 (322)
T ss_pred cCCCCEEEEhh----HHHhcCC-------HHHHHHHHHH------------------HcCCCcEEEEEECCc
Confidence 56899999832 1122222 4567888887 999999999998764
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-13 Score=122.35 Aligned_cols=125 Identities=21% Similarity=0.181 Sum_probs=86.7
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
.++|.+|||+|||+|+.|.++++.+++ .+.|+++|+++.++.. .....++.+...|...+... .
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~---~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~-------~ 180 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNN---QGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAA-------L 180 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCC---CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhh-------c
Confidence 578999999999999999999999875 5799999999988543 11224556666665543211 1
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCC-CCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDS-STDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~LkpgG~lvi~~ 179 (186)
...||.|++|++|+..|+...+.....++...-+....+ .|.++ ++|..+|||||+||-++
T Consensus 181 ~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~--------lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 181 PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAA--------TQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHH--------HHHHHHHHHHHHcCCCcEEEEEC
Confidence 357999999999999999887765544433222222222 22223 33334999999998654
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.1e-13 Score=101.00 Aligned_cols=100 Identities=27% Similarity=0.437 Sum_probs=72.0
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
.+++.+|||+|||+|.++..+++. +.+|+|+|+++.++.. ........+...... +.++||+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~------~~~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~--------~~~~fD~ 81 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR------GFEVTGVDISPQMIEK----RNVVFDNFDAQDPPF--------PDGSFDL 81 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT------TSEEEEEESSHHHHHH----TTSEEEEEECHTHHC--------HSSSEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh------CCEEEEEECCHHHHhh----hhhhhhhhhhhhhhc--------cccchhh
Confidence 577889999999999999999776 4699999999998765 222222222221111 3679999
Q ss_pred EEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 117 V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
|+|.. ..+.... ...++..+.+ +|||||.+++......
T Consensus 82 i~~~~-----~l~~~~d------~~~~l~~l~~------------------~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 82 IICND-----VLEHLPD------PEEFLKELSR------------------LLKPGGYLVISDPNRD 119 (161)
T ss_dssp EEEES-----SGGGSSH------HHHHHHHHHH------------------CEEEEEEEEEEEEBTT
T ss_pred HhhHH-----HHhhccc------HHHHHHHHHH------------------hcCCCCEEEEEEcCCc
Confidence 99953 2222221 5678888887 9999999999988753
|
... |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.9e-13 Score=104.47 Aligned_cols=104 Identities=24% Similarity=0.347 Sum_probs=75.4
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
++.+|||+|||+|.++..+++..+ ..+|+++|+++.++..+ +...+++++..|+.+.. +..
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~----~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~---------~~~ 97 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGP----DAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL---------PDG 97 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTST----CEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC---------CTT
T ss_pred cCCeEEEecCChHHHHHHHHHhCC----CCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc---------ccc
Confidence 677999999999999999999864 36899999999996541 22223888888876532 247
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
+||+|++|+|.+... .........++..+.+ .|||||.|++..
T Consensus 98 ~fD~Iv~NPP~~~~~------~~~~~~~~~~i~~a~~------------------~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 98 KFDLIVSNPPFHAGG------DDGLDLLRDFIEQARR------------------YLKPGGRLFLVI 140 (170)
T ss_dssp CEEEEEE---SBTTS------HCHHHHHHHHHHHHHH------------------HEEEEEEEEEEE
T ss_pred ceeEEEEccchhccc------ccchhhHHHHHHHHHH------------------hccCCCEEEEEe
Confidence 999999997622222 2234457788888888 999999997744
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-12 Score=114.83 Aligned_cols=115 Identities=25% Similarity=0.294 Sum_probs=83.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
++++.+|||+|||+|+++..+++.+++ .++|+++|+++.++... ....+++++++|+.+.... .
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~---~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~-------~ 317 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKN---TGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEK-------F 317 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccch-------h
Confidence 577899999999999999999998754 57999999999986431 1223588889988765321 1
Q ss_pred CCCccEEEeCCCCCCCCCcccchH-----------HHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAA-----------LSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
.++||+|++|++|+..|....+.. ....+....+..+.+ +|||||+|+..+
T Consensus 318 ~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~------------------~LkpGG~lvyst 379 (444)
T PRK14902 318 AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQ------------------YLKKGGILVYST 379 (444)
T ss_pred cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHH------------------HcCCCCEEEEEc
Confidence 258999999998876665332111 112234567777777 999999999544
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-12 Score=107.98 Aligned_cols=105 Identities=20% Similarity=0.250 Sum_probs=78.0
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
++++.+|||+|||+|..+..+++.+ +++|+|+|+++.++..+ ....++.+..+|+...+. +++
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~-----~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~--------~~~ 116 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKY-----GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDF--------PEN 116 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhc-----CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCC--------CCC
Confidence 6788999999999999999998764 47999999999986542 123568888888875432 357
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+||+|++... ..|.. .+....++..+.+ +|||||.|++..+.
T Consensus 117 ~FD~V~s~~~----l~h~~-----~~d~~~~l~~i~r------------------~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 117 TFDMIYSRDA----ILHLS-----YADKKKLFEKCYK------------------WLKPNGILLITDYC 158 (263)
T ss_pred CeEEEEEhhh----HHhCC-----HHHHHHHHHHHHH------------------HcCCCcEEEEEEec
Confidence 8999998321 11211 1124578888888 99999999998764
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-12 Score=108.02 Aligned_cols=105 Identities=30% Similarity=0.459 Sum_probs=78.9
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC------CCCCeEEEEeeecCCChhhHhhhCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH------CDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~------~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.++++.+|||+|||+|.++..+++.++. .++|+|+|+++.|++.++ ...+++++++|+.+++.
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~---~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~-------- 142 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGP---TGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV-------- 142 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCC---CCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCC--------
Confidence 3578999999999999999888887754 468999999999976521 22478888888766542
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
++++||+|+++.. ..+..+ ....+.++.+ +|||||+|++..+
T Consensus 143 ~~~~fD~Vi~~~v----~~~~~d-------~~~~l~~~~r------------------~LkpGG~l~i~~~ 184 (272)
T PRK11873 143 ADNSVDVIISNCV----INLSPD-------KERVFKEAFR------------------VLKPGGRFAISDV 184 (272)
T ss_pred CCCceeEEEEcCc----ccCCCC-------HHHHHHHHHH------------------HcCCCcEEEEEEe
Confidence 3568999998642 122222 3467788888 9999999999754
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.3e-12 Score=101.71 Aligned_cols=103 Identities=22% Similarity=0.217 Sum_probs=77.0
Q ss_pred cCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhh
Q 038391 34 YKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 34 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
...++++.+|||+|||+|..+..+++..+ +++|+|+|+++.|+..+ ....+++++++|+.+..
T Consensus 40 ~~~l~~g~~VLDiGcGtG~~al~la~~~~----~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~------- 108 (187)
T PRK00107 40 APYLPGGERVLDVGSGAGFPGIPLAIARP----ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFG------- 108 (187)
T ss_pred HhhcCCCCeEEEEcCCCCHHHHHHHHHCC----CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCC-------
Confidence 34466789999999999999999998754 58999999999987531 12235889999876543
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
..++||+|+++. ... ...++..+.+ .|||||++++.....
T Consensus 109 --~~~~fDlV~~~~------~~~---------~~~~l~~~~~------------------~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 109 --QEEKFDVVTSRA------VAS---------LSDLVELCLP------------------LLKPGGRFLALKGRD 148 (187)
T ss_pred --CCCCccEEEEcc------ccC---------HHHHHHHHHH------------------hcCCCeEEEEEeCCC
Confidence 135899999853 111 3467777777 999999999876543
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.5e-12 Score=107.44 Aligned_cols=121 Identities=19% Similarity=0.252 Sum_probs=86.1
Q ss_pred HHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC-------CcCCCCCeEEEEeeecCCChhhH
Q 038391 32 KQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP-------SLHCDARVQTVSADVINLPSNQV 104 (186)
Q Consensus 32 ~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~-------~~~~~~~~~~~~~d~~~~~~~~l 104 (186)
..+...+...+|||+|||+|..+..++++.. ..+++|||+++.+.. .+....+++++++|+.+.....
T Consensus 37 ~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~----~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~- 111 (248)
T COG4123 37 AAFAPVPKKGRILDLGAGNGALGLLLAQRTE----KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL- 111 (248)
T ss_pred HhhcccccCCeEEEecCCcCHHHHHHhccCC----CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc-
Confidence 3344445578999999999999999999965 389999999999843 3567789999999988765321
Q ss_pred hhhCCCCCCccEEEeCCCCCCCCCc-ccchHHH------HHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 105 RALSPKQKGFSVILSDMCPSVSGIT-TKDAALS------VELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 105 ~~~~~~~~~~D~V~~d~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
...+||+|+||+|....+.. ..+.... .-..+.++..+.+ +|||||.+.+
T Consensus 112 -----~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~------------------~lk~~G~l~~ 168 (248)
T COG4123 112 -----VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAK------------------LLKPGGRLAF 168 (248)
T ss_pred -----cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHH------------------HccCCCEEEE
Confidence 23479999999875433333 1211111 1124566666666 9999999988
Q ss_pred EEc
Q 038391 178 KLL 180 (186)
Q Consensus 178 ~~~ 180 (186)
.+-
T Consensus 169 V~r 171 (248)
T COG4123 169 VHR 171 (248)
T ss_pred Eec
Confidence 653
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-12 Score=102.81 Aligned_cols=104 Identities=21% Similarity=0.266 Sum_probs=73.2
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.++.+|||+|||+|..+..++++ +.+|+|+|+|+.+++.. ....++++...|+...+ ..
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~------g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~---------~~ 93 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAAN------GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT---------FD 93 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC---------cC
Confidence 45679999999999999999986 57999999999987541 11234677777765442 13
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE-EEccCC
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI-KLLESQ 183 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi-~~~~~~ 183 (186)
++||+|++... .+... ......++..+.+ +|||||.+++ ..+..+
T Consensus 94 ~~fD~I~~~~~-----~~~~~----~~~~~~~l~~i~~------------------~LkpgG~~~~~~~~~~~ 139 (197)
T PRK11207 94 GEYDFILSTVV-----LMFLE----AKTIPGLIANMQR------------------CTKPGGYNLIVAAMDTA 139 (197)
T ss_pred CCcCEEEEecc-----hhhCC----HHHHHHHHHHHHH------------------HcCCCcEEEEEEEecCC
Confidence 57999999542 22221 1235577888887 9999999654 555443
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-12 Score=103.70 Aligned_cols=118 Identities=25% Similarity=0.367 Sum_probs=83.1
Q ss_pred HHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc--CCCCCeEEEEeeecCCCh
Q 038391 24 AFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL--HCDARVQTVSADVINLPS 101 (186)
Q Consensus 24 ~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~--~~~~~~~~~~~d~~~~~~ 101 (186)
...+.+...... ..++.+|||+|||+|.++..+++..+ ..+++++|+++.++... ....+++++.+|+...+.
T Consensus 20 ~~~l~~~~~~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 94 (240)
T TIGR02072 20 AKRLLALLKEKG-IFIPASVLDIGCGTGYLTRALLKRFP----QAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPL 94 (240)
T ss_pred HHHHHHHhhhhc-cCCCCeEEEECCCccHHHHHHHHhCC----CCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCC
Confidence 334555444432 23347999999999999999999864 47899999999987542 222467888888876542
Q ss_pred hhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 102 NQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 102 ~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+.++||+|+++... .+..+ ....+..+.+ .|||||.+++..+.
T Consensus 95 --------~~~~fD~vi~~~~l----~~~~~-------~~~~l~~~~~------------------~L~~~G~l~~~~~~ 137 (240)
T TIGR02072 95 --------EDSSFDLIVSNLAL----QWCDD-------LSQALSELAR------------------VLKPGGLLAFSTFG 137 (240)
T ss_pred --------CCCceeEEEEhhhh----hhccC-------HHHHHHHHHH------------------HcCCCcEEEEEeCC
Confidence 35689999996531 22222 3467777887 99999999998765
Q ss_pred CC
Q 038391 182 SQ 183 (186)
Q Consensus 182 ~~ 183 (186)
..
T Consensus 138 ~~ 139 (240)
T TIGR02072 138 PG 139 (240)
T ss_pred cc
Confidence 43
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.8e-12 Score=113.88 Aligned_cols=109 Identities=26% Similarity=0.325 Sum_probs=81.6
Q ss_pred HHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhH
Q 038391 30 IQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQV 104 (186)
Q Consensus 30 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l 104 (186)
+..... ++++.+|||+|||+|..+..+++.+ +.+|+|+|+|+.++..+ ....++++.++|+...+.
T Consensus 258 l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-----~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~--- 328 (475)
T PLN02336 258 FVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-----DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTY--- 328 (475)
T ss_pred HHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-----CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCC---
Confidence 344433 5778899999999999999999875 47999999999987542 223468898998876542
Q ss_pred hhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 105 RALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 105 ~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+.++||+|++.. ...|..+ ...++.++.+ +|||||.|++..+.
T Consensus 329 -----~~~~fD~I~s~~----~l~h~~d-------~~~~l~~~~r------------------~LkpgG~l~i~~~~ 371 (475)
T PLN02336 329 -----PDNSFDVIYSRD----TILHIQD-------KPALFRSFFK------------------WLKPGGKVLISDYC 371 (475)
T ss_pred -----CCCCEEEEEECC----cccccCC-------HHHHHHHHHH------------------HcCCCeEEEEEEec
Confidence 356899999953 2233333 4567888888 99999999998764
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.8e-12 Score=109.15 Aligned_cols=114 Identities=25% Similarity=0.368 Sum_probs=80.6
Q ss_pred hHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEee
Q 038391 23 SAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSAD 95 (186)
Q Consensus 23 ~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d 95 (186)
+.++...+...+..+ ++.+|||+|||+|.++..++... ..+|+|+|+|+.++.. .....++.++.+|
T Consensus 107 s~~k~~~l~~~l~~l-~g~~VLDIGCG~G~~~~~la~~g-----~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d 180 (322)
T PRK15068 107 SDWKWDRVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGAG-----AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLG 180 (322)
T ss_pred HHhHHHHHHHhhCCC-CCCEEEEeccCCcHHHHHHHHcC-----CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCC
Confidence 334444444454433 57899999999999999999872 2479999999987643 1123578888887
Q ss_pred ecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEE
Q 038391 96 VINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHL 175 (186)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~l 175 (186)
+.+++. .++||+|+|... ..|..+ ...++..+.+ .|+|||.|
T Consensus 181 ~e~lp~---------~~~FD~V~s~~v----l~H~~d-------p~~~L~~l~~------------------~LkpGG~l 222 (322)
T PRK15068 181 IEQLPA---------LKAFDTVFSMGV----LYHRRS-------PLDHLKQLKD------------------QLVPGGEL 222 (322)
T ss_pred HHHCCC---------cCCcCEEEECCh----hhccCC-------HHHHHHHHHH------------------hcCCCcEE
Confidence 765532 468999999432 223333 4467888888 99999999
Q ss_pred EEEEc
Q 038391 176 VIKLL 180 (186)
Q Consensus 176 vi~~~ 180 (186)
++..+
T Consensus 223 vl~~~ 227 (322)
T PRK15068 223 VLETL 227 (322)
T ss_pred EEEEE
Confidence 99865
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.8e-12 Score=108.15 Aligned_cols=117 Identities=22% Similarity=0.221 Sum_probs=80.8
Q ss_pred hhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEE
Q 038391 21 ARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVS 93 (186)
Q Consensus 21 ~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~ 93 (186)
.++.++...+..... ..++.+|||+|||+|.++..++... ...|+|+|+|+.|+.. .....++.+..
T Consensus 104 ~~s~~~~~~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g-----~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~ 177 (314)
T TIGR00452 104 WRSDIKWDRVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHG-----AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEP 177 (314)
T ss_pred HHHHHHHHHHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcC-----CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEE
Confidence 344445555555544 3557899999999999998888762 2479999999988643 12234666776
Q ss_pred eeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCc
Q 038391 94 ADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGG 173 (186)
Q Consensus 94 ~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG 173 (186)
.++.+++. ..+||+|++.. ...|..+ ...++.++.+ .|||||
T Consensus 178 ~~ie~lp~---------~~~FD~V~s~g----vL~H~~d-------p~~~L~el~r------------------~LkpGG 219 (314)
T TIGR00452 178 LGIEQLHE---------LYAFDTVFSMG----VLYHRKS-------PLEHLKQLKH------------------QLVIKG 219 (314)
T ss_pred CCHHHCCC---------CCCcCEEEEcc----hhhccCC-------HHHHHHHHHH------------------hcCCCC
Confidence 66654431 34899999954 2234333 4567888888 999999
Q ss_pred EEEEEEcc
Q 038391 174 HLVIKLLE 181 (186)
Q Consensus 174 ~lvi~~~~ 181 (186)
.|++.++.
T Consensus 220 ~Lvletl~ 227 (314)
T TIGR00452 220 ELVLETLV 227 (314)
T ss_pred EEEEEEEE
Confidence 99998654
|
Known examples to date are restricted to the proteobacteria. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.6e-12 Score=101.34 Aligned_cols=75 Identities=19% Similarity=0.220 Sum_probs=57.7
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
.++++.+|||+|||+|..+..+++.++. .++|+++|+++.++..+ ....+++++.+|+.....
T Consensus 69 ~~~~~~~VLDiG~GsG~~~~~la~~~~~---~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~------- 138 (205)
T PRK13944 69 EPRPGMKILEVGTGSGYQAAVCAEAIER---RGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE------- 138 (205)
T ss_pred CCCCCCEEEEECcCccHHHHHHHHhcCC---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc-------
Confidence 3578899999999999999999998754 47999999999986531 122358888888865321
Q ss_pred CCCCCccEEEeCC
Q 038391 109 PKQKGFSVILSDM 121 (186)
Q Consensus 109 ~~~~~~D~V~~d~ 121 (186)
...+||.|+++.
T Consensus 139 -~~~~fD~Ii~~~ 150 (205)
T PRK13944 139 -KHAPFDAIIVTA 150 (205)
T ss_pred -cCCCccEEEEcc
Confidence 235899999964
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-12 Score=105.05 Aligned_cols=114 Identities=17% Similarity=0.268 Sum_probs=80.1
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----C--------------CCCC
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----H--------------CDAR 88 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----~--------------~~~~ 88 (186)
|.+...... ++++.+|||+|||.|..+..++++ |.+|+|+|+|+.+++.. . ...+
T Consensus 23 l~~~~~~l~-~~~~~rvLd~GCG~G~da~~LA~~------G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (213)
T TIGR03840 23 LVKHWPALG-LPAGARVFVPLCGKSLDLAWLAEQ------GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGN 95 (213)
T ss_pred HHHHHHhhC-CCCCCeEEEeCCCchhHHHHHHhC------CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCc
Confidence 444444322 357789999999999999999997 68999999999987641 0 1246
Q ss_pred eEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcc
Q 038391 89 VQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGV 168 (186)
Q Consensus 89 ~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (186)
++++++|+.++... ....||.|+.... ..+. . .+.....+..+.+ +
T Consensus 96 v~~~~~D~~~~~~~-------~~~~fD~i~D~~~----~~~l-~----~~~R~~~~~~l~~------------------l 141 (213)
T TIGR03840 96 IEIFCGDFFALTAA-------DLGPVDAVYDRAA----LIAL-P----EEMRQRYAAHLLA------------------L 141 (213)
T ss_pred eEEEEccCCCCCcc-------cCCCcCEEEechh----hccC-C----HHHHHHHHHHHHH------------------H
Confidence 88889998876532 1357999987432 1121 1 2345567777777 9
Q ss_pred cccCcEEEEEEcc
Q 038391 169 LKPGGHLVIKLLE 181 (186)
Q Consensus 169 LkpgG~lvi~~~~ 181 (186)
|||||++++..+.
T Consensus 142 LkpgG~~ll~~~~ 154 (213)
T TIGR03840 142 LPPGARQLLITLD 154 (213)
T ss_pred cCCCCeEEEEEEE
Confidence 9999987777664
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.5e-12 Score=104.56 Aligned_cols=104 Identities=20% Similarity=0.378 Sum_probs=76.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
++++.+|||+|||+|..+..+++.+.. ++.+|+|+|+|+.|++.+ ....+++++++|+.+.+
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~--~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~--------- 122 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHH--DNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA--------- 122 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC---------
Confidence 467889999999999999999886421 268999999999998652 22347899999886553
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
...+|+|+++.. .+.... ......+.++.+ .|||||.|++..
T Consensus 123 -~~~~D~vv~~~~-----l~~l~~----~~~~~~l~~i~~------------------~LkpGG~l~l~e 164 (247)
T PRK15451 123 -IENASMVVLNFT-----LQFLEP----SERQALLDKIYQ------------------GLNPGGALVLSE 164 (247)
T ss_pred -CCCCCEEehhhH-----HHhCCH----HHHHHHHHHHHH------------------hcCCCCEEEEEE
Confidence 235899988542 222221 124567788887 999999999875
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.7e-12 Score=108.61 Aligned_cols=116 Identities=23% Similarity=0.225 Sum_probs=83.6
Q ss_pred CCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhC
Q 038391 35 KLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
..++++.+|||+|||+|.++..++.. +.+|+|+|+++.|+..+ ....++.+.++|+.+++..
T Consensus 178 ~~~~~g~~vLDp~cGtG~~lieaa~~------~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~------ 245 (329)
T TIGR01177 178 ARVTEGDRVLDPFCGTGGFLIEAGLM------GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS------ 245 (329)
T ss_pred hCCCCcCEEEECCCCCCHHHHHHHHh------CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc------
Confidence 34688999999999999999887664 57999999999997541 1123377888998776432
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
.++||+|++|+++....... ......+...++..+.+ .|||||++++.+-...+
T Consensus 246 --~~~~D~Iv~dPPyg~~~~~~--~~~~~~l~~~~l~~~~r------------------~Lk~gG~lv~~~~~~~~ 299 (329)
T TIGR01177 246 --SESVDAIATDPPYGRSTTAA--GDGLESLYERSLEEFHE------------------VLKSEGWIVYAVPTRID 299 (329)
T ss_pred --cCCCCEEEECCCCcCccccc--CCchHHHHHHHHHHHHH------------------HccCCcEEEEEEcCCCC
Confidence 46899999998743321111 11123456778888888 99999999988766544
|
This family is found exclusively in the Archaea. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.2e-13 Score=114.63 Aligned_cols=119 Identities=31% Similarity=0.373 Sum_probs=85.7
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
..++|++|||+|+++|+.|.++++.+.+ .+..|+++|+++..+.. +....++..++.|........ .
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~--~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~-----~ 225 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMEN--EGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELL-----P 225 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCC--CCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccc-----c
Confidence 3688999999999999999999999875 25678999999988654 122334666777765443211 1
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHH-----------HHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSV-----------ELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
...+||.|++|++|+..|....+..... .+..+.+..+.+ +|||||+||-+
T Consensus 226 ~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~------------------~lk~GG~LVYS 287 (355)
T COG0144 226 GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALK------------------LLKPGGVLVYS 287 (355)
T ss_pred ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHH------------------hcCCCCEEEEE
Confidence 1236999999999999998755444433 344455555555 99999999966
Q ss_pred E
Q 038391 179 L 179 (186)
Q Consensus 179 ~ 179 (186)
+
T Consensus 288 T 288 (355)
T COG0144 288 T 288 (355)
T ss_pred c
Confidence 5
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.8e-12 Score=102.26 Aligned_cols=75 Identities=21% Similarity=0.201 Sum_probs=58.4
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.++++.+|||+|||+|.++..+++..+. .++|+++|+++.+++.+ ....+++++.+|......
T Consensus 74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~---~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~-------- 142 (215)
T TIGR00080 74 ELKPGMKVLEIGTGSGYQAAVLAEIVGR---DGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE-------- 142 (215)
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc--------
Confidence 3688999999999999999999998754 46899999999987542 122578899888765321
Q ss_pred CCCCccEEEeCC
Q 038391 110 KQKGFSVILSDM 121 (186)
Q Consensus 110 ~~~~~D~V~~d~ 121 (186)
...+||+|+++.
T Consensus 143 ~~~~fD~Ii~~~ 154 (215)
T TIGR00080 143 PLAPYDRIYVTA 154 (215)
T ss_pred ccCCCCEEEEcC
Confidence 135899999865
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.6e-12 Score=101.69 Aligned_cols=100 Identities=18% Similarity=0.206 Sum_probs=68.7
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
++.+|||+|||+|.++..++++ +.+|+|+|+++.++... ...-++++...|+.... ..++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~------g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~---------~~~~ 94 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA------GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAA---------LNED 94 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcc---------ccCC
Confidence 4569999999999999999986 57999999999997641 11113555566654332 1357
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
||+|++... .+..+ .......+..+.+ .|||||+++|..+
T Consensus 95 fD~I~~~~~-----~~~~~----~~~~~~~l~~~~~------------------~LkpgG~lli~~~ 134 (195)
T TIGR00477 95 YDFIFSTVV-----FMFLQ----AGRVPEIIANMQA------------------HTRPGGYNLIVAA 134 (195)
T ss_pred CCEEEEecc-----cccCC----HHHHHHHHHHHHH------------------HhCCCcEEEEEEe
Confidence 999998543 12221 1224567777787 9999999655443
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.7e-13 Score=95.80 Aligned_cols=109 Identities=31% Similarity=0.433 Sum_probs=75.2
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
|.+|||+|||+|.++..+++.. ..+++|+|+++..++. .....+++++++|+..... .+ ..+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-----~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~----~~--~~~ 69 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-----AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE----PL--PDG 69 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-----TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH----TC--TTT
T ss_pred CCEEEEcCcchHHHHHHHHHHC-----CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh----hc--cCc
Confidence 5689999999999999999984 2799999999988543 3345679999999865431 11 368
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
+||+|++|++..... .......+....+++.+.+ +|||||.+++.+.
T Consensus 70 ~~D~Iv~npP~~~~~---~~~~~~~~~~~~~~~~~~~------------------~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 70 KFDLIVTNPPYGPRS---GDKAALRRLYSRFLEAAAR------------------LLKPGGVLVFITP 116 (117)
T ss_dssp -EEEEEE--STTSBT---T----GGCHHHHHHHHHHH------------------HEEEEEEEEEEEE
T ss_pred eeEEEEECCCCcccc---ccchhhHHHHHHHHHHHHH------------------HcCCCeEEEEEeC
Confidence 999999998743211 1111111245577777887 9999999998653
|
... |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.3e-12 Score=99.48 Aligned_cols=94 Identities=20% Similarity=0.204 Sum_probs=70.1
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
+.+|||+|||+|..+..++...+ +++|+|+|+++.|+.. .....+++++++|+.+.. ..++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~----~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~---------~~~~ 109 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARP----ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ---------HEEQ 109 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCC----CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc---------ccCC
Confidence 78999999999999999987643 4799999999988643 112246899999887642 2468
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
||+|+++. .+. ....++.+.+ +|+|||.+++..
T Consensus 110 fD~I~s~~------~~~---------~~~~~~~~~~------------------~LkpgG~lvi~~ 142 (181)
T TIGR00138 110 FDVITSRA------LAS---------LNVLLELTLN------------------LLKVGGYFLAYK 142 (181)
T ss_pred ccEEEehh------hhC---------HHHHHHHHHH------------------hcCCCCEEEEEc
Confidence 99999843 111 2345566676 999999999864
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.9e-12 Score=111.14 Aligned_cols=103 Identities=18% Similarity=0.144 Sum_probs=75.5
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-------C--CCCeEEEEeeecCCChhhHhhhCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-------C--DARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-------~--~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
+.+|||+|||+|.++..++++.+ ..+|+++|+|+.+++.++ . ..+++++..|+.+.. .
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P----~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~---------~ 295 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNP----QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV---------E 295 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC---------C
Confidence 46999999999999999999864 489999999998876521 1 135777777764321 2
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
..+||+|+||++++.... .. .+....++..+.+ .|+|||.|+|..
T Consensus 296 ~~~fDlIlsNPPfh~~~~--~~----~~ia~~l~~~a~~------------------~LkpGG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHA--LT----DNVAWEMFHHARR------------------CLKINGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCcc--CC----HHHHHHHHHHHHH------------------hcccCCEEEEEE
Confidence 458999999987554321 11 1234567777787 999999999875
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.5e-12 Score=101.57 Aligned_cols=76 Identities=20% Similarity=0.200 Sum_probs=59.3
Q ss_pred CCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhC
Q 038391 35 KLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
..++++.+|||+|||+|+.+..+++.++. .++|+++|+++.++..+ ....+++++++|......
T Consensus 72 l~~~~g~~VLdIG~GsG~~t~~la~~~~~---~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~------- 141 (212)
T PRK13942 72 LDLKEGMKVLEIGTGSGYHAAVVAEIVGK---SGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE------- 141 (212)
T ss_pred cCCCCcCEEEEECCcccHHHHHHHHhcCC---CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC-------
Confidence 34688999999999999999999998754 57999999999996541 123478999998765421
Q ss_pred CCCCCccEEEeCC
Q 038391 109 PKQKGFSVILSDM 121 (186)
Q Consensus 109 ~~~~~~D~V~~d~ 121 (186)
+..+||+|+++.
T Consensus 142 -~~~~fD~I~~~~ 153 (212)
T PRK13942 142 -ENAPYDRIYVTA 153 (212)
T ss_pred -cCCCcCEEEECC
Confidence 246899999854
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.6e-12 Score=89.75 Aligned_cols=93 Identities=20% Similarity=0.378 Sum_probs=53.3
Q ss_pred EEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC------CCCeEEEEeeecCCChhhHhhhCCCCCCccEE
Q 038391 44 LDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC------DARVQTVSADVINLPSNQVRALSPKQKGFSVI 117 (186)
Q Consensus 44 LDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~------~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V 117 (186)
||+|||+|.++..+.+.++ ..+++|+|+|+.|+..++. ......+..+..+..... ..++||+|
T Consensus 1 LdiGcG~G~~~~~l~~~~~----~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~fD~V 70 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP----DARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYD------PPESFDLV 70 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-----EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CC------C----SEE
T ss_pred CEeCccChHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcc------ccccccee
Confidence 7999999999999999974 5899999999999955221 122333333332221110 12599999
Q ss_pred EeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEE
Q 038391 118 LSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHL 175 (186)
Q Consensus 118 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~l 175 (186)
++... .+... -...++..+.+ +|||||+|
T Consensus 71 ~~~~v-----l~~l~------~~~~~l~~~~~------------------~L~pgG~l 99 (99)
T PF08242_consen 71 VASNV-----LHHLE------DIEAVLRNIYR------------------LLKPGGIL 99 (99)
T ss_dssp EEE-T-----TS--S-------HHHHHHHHTT------------------T-TSS-EE
T ss_pred hhhhh-----Hhhhh------hHHHHHHHHHH------------------HcCCCCCC
Confidence 98432 22222 25688888888 99999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-11 Score=102.77 Aligned_cols=113 Identities=17% Similarity=0.192 Sum_probs=79.7
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
+++.+|||+|||+|.++..++...+ +.+|+|+|+|+.++..+ ....+++++++|+.+.. +
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~----~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~---------~ 186 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFP----EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL---------P 186 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc---------C
Confidence 3457999999999999999999864 47999999999997541 22346889999875421 2
Q ss_pred CCCccEEEeCCCCCCCCCc-cc----chH---------HHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEE
Q 038391 111 QKGFSVILSDMCPSVSGIT-TK----DAA---------LSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV 176 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~-~~----~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lv 176 (186)
..+||+|++|++....... .. .++ ...+.....+..+.+ .|+|||+++
T Consensus 187 ~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~------------------~L~~gG~l~ 248 (284)
T TIGR03533 187 GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAAD------------------HLNENGVLV 248 (284)
T ss_pred CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHH------------------hcCCCCEEE
Confidence 4579999999764222110 00 001 123445677777777 999999999
Q ss_pred EEEcc
Q 038391 177 IKLLE 181 (186)
Q Consensus 177 i~~~~ 181 (186)
+.+-+
T Consensus 249 ~e~g~ 253 (284)
T TIGR03533 249 VEVGN 253 (284)
T ss_pred EEECc
Confidence 88754
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.4e-13 Score=93.91 Aligned_cols=96 Identities=23% Similarity=0.350 Sum_probs=65.6
Q ss_pred EEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHhhhCCCCCCccEE
Q 038391 43 VLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVRALSPKQKGFSVI 117 (186)
Q Consensus 43 vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V 117 (186)
|||+|||+|..+..+.+.+.. ++..+++|+|+++.|+... ....+++++++|+.+++. ..++||+|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~-~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~--------~~~~~D~v 71 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDA-GPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPF--------SDGKFDLV 71 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHH--------HSSSEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhh-cccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcc--------cCCCeeEE
Confidence 799999999999999998722 1137999999999997651 122488999999977542 25699999
Q ss_pred EeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCc
Q 038391 118 LSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGG 173 (186)
Q Consensus 118 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG 173 (186)
++.+. ...+ .. .+....+++.+.+ +|||||
T Consensus 72 ~~~~~---~~~~-~~----~~~~~~ll~~~~~------------------~l~pgG 101 (101)
T PF13649_consen 72 VCSGL---SLHH-LS----PEELEALLRRIAR------------------LLRPGG 101 (101)
T ss_dssp EE-TT---GGGG-SS----HHHHHHHHHHHHH------------------TEEEEE
T ss_pred EEcCC---ccCC-CC----HHHHHHHHHHHHH------------------HhCCCC
Confidence 99431 1112 22 3446677777777 999998
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.9e-12 Score=104.86 Aligned_cols=115 Identities=25% Similarity=0.365 Sum_probs=86.4
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVIN 98 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~ 98 (186)
|+..+...+. +++|.+|||||||-|.+++++++.+ +.+|+|+++|+++... .....+++++..|..+
T Consensus 60 k~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-----~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd 133 (283)
T COG2230 60 KLDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-----GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD 133 (283)
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-----CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc
Confidence 4444444444 7999999999999999999999998 5899999999988533 3455678888888766
Q ss_pred CChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 99 LPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 99 ~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
+. ++||-|++-......| .+.....+..+.+ +|+|||.+++.
T Consensus 134 ~~-----------e~fDrIvSvgmfEhvg---------~~~~~~ff~~~~~------------------~L~~~G~~llh 175 (283)
T COG2230 134 FE-----------EPFDRIVSVGMFEHVG---------KENYDDFFKKVYA------------------LLKPGGRMLLH 175 (283)
T ss_pred cc-----------cccceeeehhhHHHhC---------cccHHHHHHHHHh------------------hcCCCceEEEE
Confidence 53 4599999832211111 2335578888888 99999999998
Q ss_pred EccCCC
Q 038391 179 LLESQD 184 (186)
Q Consensus 179 ~~~~~~ 184 (186)
.+...+
T Consensus 176 ~I~~~~ 181 (283)
T COG2230 176 SITGPD 181 (283)
T ss_pred EecCCC
Confidence 877654
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.7e-12 Score=99.54 Aligned_cols=106 Identities=23% Similarity=0.307 Sum_probs=71.5
Q ss_pred HHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCChhhHhh
Q 038391 32 KQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPSNQVRA 106 (186)
Q Consensus 32 ~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~~~l~~ 106 (186)
.....++ ++++||+|||.|..+.+++++ |..|+++|+|+..++. ....-.+++...|+.....
T Consensus 24 ~a~~~~~-~g~~LDlgcG~GRNalyLA~~------G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~----- 91 (192)
T PF03848_consen 24 EAVPLLK-PGKALDLGCGEGRNALYLASQ------GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDF----- 91 (192)
T ss_dssp HHCTTS--SSEEEEES-TTSHHHHHHHHT------T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS------
T ss_pred HHHhhcC-CCcEEEcCCCCcHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccc-----
Confidence 3344454 569999999999999999998 7899999999988765 1223347788888765542
Q ss_pred hCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 107 LSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 107 ~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
...||+|++.. .....+ .+.....++.+.. .++|||++++..+
T Consensus 92 ----~~~yD~I~st~-----v~~fL~----~~~~~~i~~~m~~------------------~~~pGG~~li~~~ 134 (192)
T PF03848_consen 92 ----PEEYDFIVSTV-----VFMFLQ----RELRPQIIENMKA------------------ATKPGGYNLIVTF 134 (192)
T ss_dssp ----TTTEEEEEEES-----SGGGS-----GGGHHHHHHHHHH------------------TEEEEEEEEEEEE
T ss_pred ----cCCcCEEEEEE-----EeccCC----HHHHHHHHHHHHh------------------hcCCcEEEEEEEe
Confidence 35899998732 122222 2234566777776 8999999988654
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.2e-12 Score=104.52 Aligned_cols=104 Identities=28% Similarity=0.366 Sum_probs=70.8
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
.+++|.+|||+|||-|.++..+++++ +++|+||.+|++..+. .....++++...|..+++
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~-----g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~-------- 125 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERY-----GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP-------- 125 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH-------EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----------
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHc-----CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--------
Confidence 47999999999999999999999997 5899999999988542 455567888888876542
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
.+||.|++- ....+.. .+....++..+.+ +|||||.+++..+..
T Consensus 126 ---~~fD~IvSi--------~~~Ehvg-~~~~~~~f~~~~~------------------~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 126 ---GKFDRIVSI--------EMFEHVG-RKNYPAFFRKISR------------------LLKPGGRLVLQTITH 169 (273)
T ss_dssp ----S-SEEEEE--------SEGGGTC-GGGHHHHHHHHHH------------------HSETTEEEEEEEEEE
T ss_pred ---CCCCEEEEE--------echhhcC-hhHHHHHHHHHHH------------------hcCCCcEEEEEeccc
Confidence 389999982 1122211 1224577888888 999999999887654
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-11 Score=100.31 Aligned_cols=86 Identities=17% Similarity=0.168 Sum_probs=64.2
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEE
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVI 117 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V 117 (186)
.++.+|||+|||+|..+..+++.. +.+|+|+|+|+.|++.+... ..++++|+.+++. ++++||+|
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~-----~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~--------~d~sfD~v 114 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF-----KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPF--------RDKSFDVV 114 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc-----CCEEEEECCCHHHHHHHHhc--cceEEechhhCCC--------CCCCEEEE
Confidence 357899999999999999999875 36999999999998764332 2456777766543 36899999
Q ss_pred EeCCCCCCCCCcccchHHHHHHHHHHHHHHcC
Q 038391 118 LSDMCPSVSGITTKDAALSVELGMRAVDLALG 149 (186)
Q Consensus 118 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (186)
++... .+.... ...++.++.+
T Consensus 115 ~~~~~-----l~~~~d------~~~~l~e~~R 135 (226)
T PRK05785 115 MSSFA-----LHASDN------IEKVIAEFTR 135 (226)
T ss_pred EecCh-----hhccCC------HHHHHHHHHH
Confidence 99542 232221 5678888888
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-11 Score=100.74 Aligned_cols=105 Identities=24% Similarity=0.361 Sum_probs=76.7
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
++++.+|||+|||+|.++..+++.+.. ++.+|+|+|+++.|+..+ ....+++++++|+...+.
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~--p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------- 120 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQ--PNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-------- 120 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC--------
Confidence 357789999999999999999987532 268999999999997542 123468899998876542
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
..+|+|++... .+.... .....++.++.+ .|||||.+++...
T Consensus 121 --~~~d~v~~~~~-----l~~~~~----~~~~~~l~~i~~------------------~LkpgG~l~i~d~ 162 (239)
T TIGR00740 121 --KNASMVILNFT-----LQFLPP----EDRIALLTKIYE------------------GLNPNGVLVLSEK 162 (239)
T ss_pred --CCCCEEeeecc-----hhhCCH----HHHHHHHHHHHH------------------hcCCCeEEEEeec
Confidence 35899888542 222211 124567888888 9999999999853
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-11 Score=105.62 Aligned_cols=102 Identities=21% Similarity=0.209 Sum_probs=73.6
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-----CCCCeEEEEeeecCCChhhHhhhCCCCCCc
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-----CDARVQTVSADVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-----~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~ 114 (186)
..+|||+|||+|.++..++++.+ ..+|+++|+++.++..+. .....+++..|+.+. ..++|
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p----~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~----------~~~~f 262 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSP----KIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD----------IKGRF 262 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc----------cCCCc
Confidence 45899999999999999999864 479999999999976521 112345556665432 14689
Q ss_pred cEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 115 SVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 115 D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
|+|++|++.+...... ....+.++..+.+ .|||||.|+|..
T Consensus 263 DlIvsNPPFH~g~~~~------~~~~~~~i~~a~~------------------~LkpgG~L~iVa 303 (342)
T PRK09489 263 DMIISNPPFHDGIQTS------LDAAQTLIRGAVR------------------HLNSGGELRIVA 303 (342)
T ss_pred cEEEECCCccCCcccc------HHHHHHHHHHHHH------------------hcCcCCEEEEEE
Confidence 9999998754322221 2346678888887 999999998754
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.3e-12 Score=101.33 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=75.5
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeee-cCCChhhHhhhCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADV-INLPSNQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~-~~~~~~~l~~~~~~~ 111 (186)
++.+|||+|||+|.++..+++.++ +.+|+|+|+++.++..+ ....++.++++|+ ..++ .. .+.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p----~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~-----~~-~~~ 109 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANP----DINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL-----DM-FPD 109 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCC----CccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH-----HH-cCc
Confidence 578999999999999999998864 47999999999997542 1225788898887 4322 11 135
Q ss_pred CCccEEEeCCCCCCCC-CcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 112 KGFSVILSDMCPSVSG-ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
++||.|+++.+.+... .+... ......++..+.+ +|||||.|+|..
T Consensus 110 ~~~D~V~~~~~~p~~~~~~~~~----~~~~~~~l~~i~~------------------~LkpgG~l~i~~ 156 (202)
T PRK00121 110 GSLDRIYLNFPDPWPKKRHHKR----RLVQPEFLALYAR------------------KLKPGGEIHFAT 156 (202)
T ss_pred cccceEEEECCCCCCCcccccc----ccCCHHHHHHHHH------------------HcCCCCEEEEEc
Confidence 6899999976421111 01100 0113467777787 999999999875
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.4e-11 Score=96.80 Aligned_cols=104 Identities=33% Similarity=0.509 Sum_probs=77.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
++++.+|||+|||+|.++..+++.+++ .++|+|+|+++.++..+ ....++++..+|+...+. ..
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~---~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~--------~~ 85 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGP---EGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPF--------PD 85 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCC---CcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCC--------CC
Confidence 577889999999999999999998743 57999999999886442 223568888888765432 25
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
++||+|++... ..+..+ ....+..+.+ +|||||.+++...
T Consensus 86 ~~~D~v~~~~~----~~~~~~-------~~~~l~~~~~------------------~L~~gG~l~~~~~ 125 (241)
T PRK08317 86 GSFDAVRSDRV----LQHLED-------PARALAEIAR------------------VLRPGGRVVVLDT 125 (241)
T ss_pred CCceEEEEech----hhccCC-------HHHHHHHHHH------------------HhcCCcEEEEEec
Confidence 68999998542 112222 3456777777 9999999998764
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.3e-11 Score=95.43 Aligned_cols=110 Identities=18% Similarity=0.145 Sum_probs=75.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
.++.+|||+|||+|.++..+++. +.+|+++|+++.++..+ ....+++++.+|+.+.. .+
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~----------~~ 81 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGK------GKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV----------RG 81 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhc------CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc----------CC
Confidence 45679999999999999999986 34899999999997541 12235777778765432 34
Q ss_pred CccEEEeCCCCCCCCC-cccchH---------HHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 113 GFSVILSDMCPSVSGI-TTKDAA---------LSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+||+|+++.+...... ...... ........++..+.+ +|||||.+++....
T Consensus 82 ~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 82 KFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPE------------------ILKEGGRVQLIQSS 142 (179)
T ss_pred cccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHH------------------hhCCCCEEEEEEec
Confidence 8999999876422111 000000 112335677777777 99999999887644
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.9e-11 Score=97.34 Aligned_cols=107 Identities=15% Similarity=0.158 Sum_probs=76.5
Q ss_pred CCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC-CCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 35 KLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC-DARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~-~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
..++++.+|||+|||+|.++..+++.++ +.+++|+|+|+.+++.++. ..++++.++|+.+ +. +.++
T Consensus 39 ~~~~~~~~VLDiGCG~G~~~~~L~~~~~----~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~--------~~~s 105 (204)
T TIGR03587 39 NRLPKIASILELGANIGMNLAALKRLLP----FKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PF--------KDNF 105 (204)
T ss_pred HhcCCCCcEEEEecCCCHHHHHHHHhCC----CCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CC--------CCCC
Confidence 3456788999999999999999998764 4799999999999876433 3567788888765 22 3579
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
||+|+++.. ..|. + .+....++.++.+ ++ ++.++|..+..+
T Consensus 106 fD~V~~~~v----L~hl-~----p~~~~~~l~el~r------------------~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 106 FDLVLTKGV----LIHI-N----PDNLPTAYRELYR------------------CS--NRYILIAEYYNP 146 (204)
T ss_pred EEEEEECCh----hhhC-C----HHHHHHHHHHHHh------------------hc--CcEEEEEEeeCC
Confidence 999998542 1121 1 1335677777777 55 567777766554
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.5e-11 Score=98.59 Aligned_cols=120 Identities=25% Similarity=0.289 Sum_probs=77.9
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLP 100 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~ 100 (186)
.+.+.+.... ++++.+|||+|||+|.++..+++. + ..+|+++|+++.++..+ ....++.++.+|+....
T Consensus 24 ~l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~-~----~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~ 97 (223)
T PRK14967 24 LLADALAAEG-LGPGRRVLDLCTGSGALAVAAAAA-G----AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAV 97 (223)
T ss_pred HHHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHc-C----CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhc
Confidence 3444444433 577889999999999999998875 2 25999999999987541 11224677777765421
Q ss_pred hhhHhhhCCCCCCccEEEeCCCCCCCCCc-cc---------chHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccc
Q 038391 101 SNQVRALSPKQKGFSVILSDMCPSVSGIT-TK---------DAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLK 170 (186)
Q Consensus 101 ~~~l~~~~~~~~~~D~V~~d~~~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk 170 (186)
+.++||+|++|++....... .. ...........++..+.+ +||
T Consensus 98 ---------~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~------------------~Lk 150 (223)
T PRK14967 98 ---------EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPA------------------LLA 150 (223)
T ss_pred ---------cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHH------------------hcC
Confidence 34689999999753221110 00 001122334567777777 999
Q ss_pred cCcEEEEE
Q 038391 171 PGGHLVIK 178 (186)
Q Consensus 171 pgG~lvi~ 178 (186)
|||++++.
T Consensus 151 ~gG~l~~~ 158 (223)
T PRK14967 151 PGGSLLLV 158 (223)
T ss_pred CCcEEEEE
Confidence 99999874
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-11 Score=102.11 Aligned_cols=99 Identities=20% Similarity=0.350 Sum_probs=73.2
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-CCCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-HCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
.+..+|||+|||+|.++..+++.++.. ++.+|+|+|+|+.++..+ ....++++..+|+.+++. ++++||+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~-~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~--------~~~sfD~ 154 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEI-TTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPF--------ADQSLDA 154 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccc-cCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCC--------cCCceeE
Confidence 345789999999999999999886531 124899999999998763 233568888998876653 3579999
Q ss_pred EEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 117 V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
|++... . ....+..+ +|||||.|++....
T Consensus 155 I~~~~~--------~----------~~~~e~~r------------------vLkpgG~li~~~p~ 183 (272)
T PRK11088 155 IIRIYA--------P----------CKAEELAR------------------VVKPGGIVITVTPG 183 (272)
T ss_pred EEEecC--------C----------CCHHHHHh------------------hccCCCEEEEEeCC
Confidence 998432 1 12345666 99999999987643
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.3e-11 Score=94.98 Aligned_cols=102 Identities=18% Similarity=0.290 Sum_probs=74.7
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
.+.++.+|||+|||+|.++..++...++ .++|+++|+++.+++.. ....++.++.+|+.+....
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~---~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~------ 107 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGE---TGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT------ 107 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh------
Confidence 4678999999999999999999987653 57999999999997531 2135688888877542111
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
...+||.|+++.. ... ....+..+.+ +|||||++++..
T Consensus 108 -~~~~~D~V~~~~~-----~~~---------~~~~l~~~~~------------------~LkpgG~lv~~~ 145 (198)
T PRK00377 108 -INEKFDRIFIGGG-----SEK---------LKEIISASWE------------------IIKKGGRIVIDA 145 (198)
T ss_pred -cCCCCCEEEECCC-----ccc---------HHHHHHHHHH------------------HcCCCcEEEEEe
Confidence 1358999998431 111 3456777777 999999999754
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.8e-11 Score=94.54 Aligned_cols=106 Identities=28% Similarity=0.447 Sum_probs=77.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
..++.+|||+|||+|.++..++...+. ..+++++|+++.++... ....+++++.+|+.+...
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-------- 117 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGK---TGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF-------- 117 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCC---CCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC--------
Confidence 456789999999999999999998642 47999999999886441 123568888888876542
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
..++||+|++... .+.... ....+..+.+ +|+|||.+++..+..
T Consensus 118 ~~~~~D~I~~~~~-----l~~~~~------~~~~l~~~~~------------------~L~~gG~li~~~~~~ 161 (239)
T PRK00216 118 PDNSFDAVTIAFG-----LRNVPD------IDKALREMYR------------------VLKPGGRLVILEFSK 161 (239)
T ss_pred CCCCccEEEEecc-----cccCCC------HHHHHHHHHH------------------hccCCcEEEEEEecC
Confidence 2468999998432 222221 4466777777 999999998876544
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-11 Score=102.58 Aligned_cols=99 Identities=21% Similarity=0.247 Sum_probs=70.1
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
++++|||+|||+|..+.++++. +.+|+|+|+|+.++... ....++++...|+.... ..++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~------g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~---------~~~~ 184 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL------GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS---------IQEE 184 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc---------ccCC
Confidence 3459999999999999999986 57999999999997641 11225677777665432 1468
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
||+|++... .+..+ .+.....+..+.+ .|+|||++++..
T Consensus 185 fD~I~~~~v-----l~~l~----~~~~~~~l~~~~~------------------~LkpgG~~l~v~ 223 (287)
T PRK12335 185 YDFILSTVV-----LMFLN----RERIPAIIKNMQE------------------HTNPGGYNLIVC 223 (287)
T ss_pred ccEEEEcch-----hhhCC----HHHHHHHHHHHHH------------------hcCCCcEEEEEE
Confidence 999998542 12222 1235577788887 999999976643
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.5e-11 Score=93.67 Aligned_cols=106 Identities=25% Similarity=0.370 Sum_probs=77.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC----CCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH----CDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~----~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
..++.+|||+|||+|.++..+++..+. ..+++++|+++.++.... ...++++..+|+.+.+. +.+
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~---~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~ 105 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPD---RGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPF--------EDN 105 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCC---CceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCC--------CCC
Confidence 346889999999999999999998642 269999999998865421 23468888888876542 246
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
+||+|++... .+.... ....++.+.+ .|+|||++++..+..
T Consensus 106 ~~D~i~~~~~-----~~~~~~------~~~~l~~~~~------------------~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 106 SFDAVTIAFG-----LRNVTD------IQKALREMYR------------------VLKPGGRLVILEFSK 146 (223)
T ss_pred cEEEEEEeee-----eCCccc------HHHHHHHHHH------------------HcCCCcEEEEEEecC
Confidence 8999988432 222221 4467788887 999999999876643
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.9e-11 Score=105.14 Aligned_cols=102 Identities=25% Similarity=0.327 Sum_probs=72.8
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC---CCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH---CDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~---~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
++++.+|||+|||+|.++..+++.+ +.+|+|+|+|+.+++.+. ....+++...|+... .++
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~-----g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l-----------~~~ 228 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHY-----GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL-----------NGQ 228 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc-----------CCC
Confidence 6789999999999999999999875 479999999999976521 112356665654322 358
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
||.|++.... .... .......+..+.+ +|||||.+++..+.
T Consensus 229 fD~Ivs~~~~-----ehvg----~~~~~~~l~~i~r------------------~LkpGG~lvl~~i~ 269 (383)
T PRK11705 229 FDRIVSVGMF-----EHVG----PKNYRTYFEVVRR------------------CLKPDGLFLLHTIG 269 (383)
T ss_pred CCEEEEeCch-----hhCC----hHHHHHHHHHHHH------------------HcCCCcEEEEEEcc
Confidence 9999984321 1110 1123467777887 99999999998764
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.3e-11 Score=93.16 Aligned_cols=98 Identities=15% Similarity=0.201 Sum_probs=71.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
+.++.+|||+|||+|.++..+++..+ +.+|+++|+++.++..+ ....+++++++|.... .
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~----~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~----------~ 94 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFP----SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE----------L 94 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh----------c
Confidence 56788999999999999999998854 47999999999986541 1124678887775311 1
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
.++||+|+++.. ... ....+..+.+ .|+|||++++...
T Consensus 95 ~~~~D~v~~~~~-----~~~---------~~~~l~~~~~------------------~Lk~gG~lv~~~~ 132 (187)
T PRK08287 95 PGKADAIFIGGS-----GGN---------LTAIIDWSLA------------------HLHPGGRLVLTFI 132 (187)
T ss_pred CcCCCEEEECCC-----ccC---------HHHHHHHHHH------------------hcCCCeEEEEEEe
Confidence 357999998542 111 2345666776 9999999998764
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.2e-11 Score=105.49 Aligned_cols=114 Identities=17% Similarity=0.133 Sum_probs=77.6
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
++++.+|||+|||+|.++..++...+ +.+|+|+|+|+.+++.+ ....+++++++|+.+.... ..
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~p----~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~-------~~ 317 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALERP----DAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMP-------SE 317 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccc-------cC
Confidence 45677999999999999999998754 47999999999997542 1234788999987543211 13
Q ss_pred CCccEEEeCCCCCCCCCccc-c-------------hHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 112 KGFSVILSDMCPSVSGITTK-D-------------AALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
++||+|++|+|.-....... . .....+..+..+..+.+ .|+|||.+++
T Consensus 318 ~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~------------------~LkpgG~lil 379 (423)
T PRK14966 318 GKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPD------------------RLAEGGFLLL 379 (423)
T ss_pred CCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHH------------------hcCCCcEEEE
Confidence 57999999986422221110 0 01122334456666666 9999999987
Q ss_pred EE
Q 038391 178 KL 179 (186)
Q Consensus 178 ~~ 179 (186)
.+
T Consensus 380 Ei 381 (423)
T PRK14966 380 EH 381 (423)
T ss_pred EE
Confidence 65
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.5e-11 Score=97.58 Aligned_cols=112 Identities=22% Similarity=0.270 Sum_probs=79.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
..++.+|||+|||+|.++..++..++ ..+|+|+|+++.++..+ ....++.++.+|+.... .
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~----~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~---------~ 172 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERP----DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL---------P 172 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC---------C
Confidence 35677999999999999999999874 47999999999986541 23357888888874421 2
Q ss_pred CCCccEEEeCCCCCCCCCcc-cc--------------hHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEE
Q 038391 111 QKGFSVILSDMCPSVSGITT-KD--------------AALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHL 175 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~-~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~l 175 (186)
.++||+|++|+++....... .. .....+.....+..+.+ +|+|||++
T Consensus 173 ~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~------------------~Lk~gG~l 234 (275)
T PRK09328 173 GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPR------------------YLKPGGWL 234 (275)
T ss_pred CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHH------------------hcccCCEE
Confidence 36899999987643221110 00 01133445667777777 99999999
Q ss_pred EEEE
Q 038391 176 VIKL 179 (186)
Q Consensus 176 vi~~ 179 (186)
++.+
T Consensus 235 ~~e~ 238 (275)
T PRK09328 235 LLEI 238 (275)
T ss_pred EEEE
Confidence 9865
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.7e-11 Score=98.89 Aligned_cols=111 Identities=17% Similarity=0.216 Sum_probs=78.1
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
.+|||+|||+|.++..++...+ +.+|+|+|+++.++..+ ....+++++++|+.+.. +..+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~----~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~---------~~~~ 182 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP----NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL---------AGQK 182 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC---------cCCC
Confidence 6999999999999999999864 47999999999997541 22235889999875421 2348
Q ss_pred ccEEEeCCCCCCCCC---------cccc-----hHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 114 FSVILSDMCPSVSGI---------TTKD-----AALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~---------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
||+|++|++.-.... +.+. ...........+..+.+ .|+|||.|++.+
T Consensus 183 fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~------------------~L~~gG~l~~e~ 244 (284)
T TIGR00536 183 IDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPD------------------YLKPNGFLVCEI 244 (284)
T ss_pred ccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHH------------------hccCCCEEEEEE
Confidence 999999976322211 0000 01123456677777777 999999999987
Q ss_pred ccC
Q 038391 180 LES 182 (186)
Q Consensus 180 ~~~ 182 (186)
-+.
T Consensus 245 g~~ 247 (284)
T TIGR00536 245 GNW 247 (284)
T ss_pred Ccc
Confidence 543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-11 Score=98.98 Aligned_cols=112 Identities=16% Similarity=0.174 Sum_probs=77.7
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
...+|||+|||+|.++..+++..+ ..+|+|+|+++.++..+ ....+++++++|+.++.. .+. +.+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p----~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~----~~~-~~~ 86 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNP----DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLD----KFF-PDG 86 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCC----CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHH----hhC-CCC
Confidence 456999999999999999999864 48999999999987542 122479999998865321 111 346
Q ss_pred CccEEEeCCCCCC-CCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 113 GFSVILSDMCPSV-SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 113 ~~D~V~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
++|.|+.+.+.+. ...|.... -....++..+.+ +|||||.|++.+-.
T Consensus 87 ~~d~v~~~~pdpw~k~~h~~~r----~~~~~~l~~~~r------------------~LkpgG~l~~~td~ 134 (194)
T TIGR00091 87 SLSKVFLNFPDPWPKKRHNKRR----ITQPHFLKEYAN------------------VLKKGGVIHFKTDN 134 (194)
T ss_pred ceeEEEEECCCcCCCCCccccc----cCCHHHHHHHHH------------------HhCCCCEEEEEeCC
Confidence 8999999864221 11111110 012467777777 99999999987643
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.8e-11 Score=96.62 Aligned_cols=103 Identities=16% Similarity=0.235 Sum_probs=74.0
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----C--------------CCCCeEEEEeeecC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----H--------------CDARVQTVSADVIN 98 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----~--------------~~~~~~~~~~d~~~ 98 (186)
++++.+|||+|||.|..+..++++ |.+|+|||+|+..++.. . ...++++.++|+.+
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~------G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~ 108 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ------GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFA 108 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC------CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccC
Confidence 356789999999999999999997 68999999999876531 1 13468888999887
Q ss_pred CChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 99 LPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 99 ~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
+... ....||.|+.... .+.. ..+.....+..+.+ +|||||++++.
T Consensus 109 l~~~-------~~~~fd~v~D~~~-----~~~l----~~~~R~~~~~~l~~------------------lL~pgG~~~l~ 154 (218)
T PRK13255 109 LTAA-------DLADVDAVYDRAA-----LIAL----PEEMRERYVQQLAA------------------LLPAGCRGLLV 154 (218)
T ss_pred CCcc-------cCCCeeEEEehHh-----HhhC----CHHHHHHHHHHHHH------------------HcCCCCeEEEE
Confidence 7532 1247999986321 1111 13445677777777 99999975543
Q ss_pred E
Q 038391 179 L 179 (186)
Q Consensus 179 ~ 179 (186)
+
T Consensus 155 ~ 155 (218)
T PRK13255 155 T 155 (218)
T ss_pred E
Confidence 3
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.2e-11 Score=97.91 Aligned_cols=114 Identities=20% Similarity=0.220 Sum_probs=76.9
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC---CCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC---DARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~---~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
..+|||+|||+|.++..+++.++ +.+|+|+|+++.++..++. ..+.+++++|+.+..... ..++||+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~----~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~------~~~~fDl 156 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD----GIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTA------LRGRVDI 156 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchh------cCCCEeE
Confidence 45899999999999999998864 4699999999999764211 112578888876432111 1357999
Q ss_pred EEeCCCCCCCCCcc-cch--------------HHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 117 ILSDMCPSVSGITT-KDA--------------ALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 117 V~~d~~~~~~~~~~-~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
|++|+++...+... ... ....+....++..+.+ +|||||++++.+-.
T Consensus 157 Vv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~------------------~L~~gG~l~l~~~~ 218 (251)
T TIGR03704 157 LAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPD------------------WLAPGGHLLVETSE 218 (251)
T ss_pred EEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHH------------------hcCCCCEEEEEECc
Confidence 99998754332211 110 0122334566666666 99999999987643
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-10 Score=99.25 Aligned_cols=110 Identities=16% Similarity=0.199 Sum_probs=77.9
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
.+|||+|||+|.++..++...+ +.+|+++|+++.++..+ ....+++++++|+.+.. +..+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p----~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l---------~~~~ 201 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP----DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL---------PGRR 201 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC---------CCCC
Confidence 6899999999999999999864 47999999999997541 22346889999875421 2358
Q ss_pred ccEEEeCCCCCCCCCc---------ccc-----hHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 114 FSVILSDMCPSVSGIT---------TKD-----AALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~---------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
||+|++|++.-..... .+. .....+.....+..+.+ .|+|||.+++.+
T Consensus 202 fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~------------------~L~pgG~l~~E~ 263 (307)
T PRK11805 202 YDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPD------------------YLTEDGVLVVEV 263 (307)
T ss_pred ccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHH------------------hcCCCCEEEEEE
Confidence 9999999763221110 000 01123455677777777 999999999976
Q ss_pred cc
Q 038391 180 LE 181 (186)
Q Consensus 180 ~~ 181 (186)
-+
T Consensus 264 g~ 265 (307)
T PRK11805 264 GN 265 (307)
T ss_pred Cc
Confidence 54
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.5e-11 Score=97.12 Aligned_cols=99 Identities=22% Similarity=0.247 Sum_probs=72.8
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
++|||+|||+|.++..+++.++ +.+|+|+|+|+.++.. .....+++++..|+...+. .++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~----~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~---------~~~ 67 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP----HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF---------PDT 67 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC---------CCC
Confidence 4799999999999999999864 4799999999988643 2234578888888754421 358
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
||+|++... ..+..+ ....+..+.+ +|||||.+++..+.
T Consensus 68 fD~I~~~~~----l~~~~~-------~~~~l~~~~~------------------~LkpgG~l~i~~~~ 106 (224)
T smart00828 68 YDLVFGFEV----IHHIKD-------KMDLFSNISR------------------HLKDGGHLVLADFI 106 (224)
T ss_pred CCEeehHHH----HHhCCC-------HHHHHHHHHH------------------HcCCCCEEEEEEcc
Confidence 999998321 111111 3467778887 99999999998753
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-11 Score=101.00 Aligned_cols=96 Identities=25% Similarity=0.391 Sum_probs=69.0
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC--------CC----CeEEEEeeecCCChhhHhhh
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC--------DA----RVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~--------~~----~~~~~~~d~~~~~~~~l~~~ 107 (186)
|.+|||+|||.|.++..+++. +.+|+|||+++.|++.++. .. +++++..+....
T Consensus 90 g~~ilDvGCGgGLLSepLArl------ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~-------- 155 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL------GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL-------- 155 (282)
T ss_pred CceEEEeccCccccchhhHhh------CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc--------
Confidence 478999999999999999998 7899999999999765221 11 233443333222
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
.++||.|+|.. ..........++.-+.+ .|||+|.|+|+++.
T Consensus 156 ---~~~fDaVvcse-----------vleHV~dp~~~l~~l~~------------------~lkP~G~lfittin 197 (282)
T KOG1270|consen 156 ---TGKFDAVVCSE-----------VLEHVKDPQEFLNCLSA------------------LLKPNGRLFITTIN 197 (282)
T ss_pred ---ccccceeeeHH-----------HHHHHhCHHHHHHHHHH------------------HhCCCCceEeeehh
Confidence 34699999933 12223336677777777 99999999999865
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.4e-11 Score=96.89 Aligned_cols=110 Identities=22% Similarity=0.242 Sum_probs=86.0
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCC--CCCeEEEEeCCCCCCCC----c-----CCCCCeEEEEeeecCCChhhHh
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLD--NGGSVVGIDVKKVKVPS----L-----HCDARVQTVSADVINLPSNQVR 105 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~--~~~~v~gvDis~~~i~~----~-----~~~~~~~~~~~d~~~~~~~~l~ 105 (186)
..++.++||+|||||-++.-+.+..+..+ ...+|+..||+|.|+.. + ....++.++.+|+.++++
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpF---- 173 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPF---- 173 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCC----
Confidence 35678999999999999999999876421 23799999999999754 1 223458899999988875
Q ss_pred hhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 106 ALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 106 ~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
++.+||..... .|+.+.-+ ...++.+++| +|||||++.|-.|.-.
T Consensus 174 ----dd~s~D~yTia-----fGIRN~th------~~k~l~EAYR------------------VLKpGGrf~cLeFskv 218 (296)
T KOG1540|consen 174 ----DDDSFDAYTIA-----FGIRNVTH------IQKALREAYR------------------VLKPGGRFSCLEFSKV 218 (296)
T ss_pred ----CCCcceeEEEe-----cceecCCC------HHHHHHHHHH------------------hcCCCcEEEEEEcccc
Confidence 47899998773 45555554 7789999999 9999999998877643
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.5e-11 Score=103.14 Aligned_cols=101 Identities=18% Similarity=0.114 Sum_probs=75.0
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC---CCCeEEEEeeecCCChhhHhhhCCCCCCc
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC---DARVQTVSADVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~---~~~~~~~~~d~~~~~~~~l~~~~~~~~~~ 114 (186)
+++.+|||+|||+|.++..+++.++ +.+|+++|+++.|+..+.. ..+++++.+|+.+.+. +.++|
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~----~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~--------~~~sF 179 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD----AKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPF--------PTDYA 179 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCC--------CCCce
Confidence 5678999999999999999998864 4799999999999765321 2467788888765542 35689
Q ss_pred cEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 115 SVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 115 D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
|+|++... ..+..+ ....++++.+ +|||||++++..
T Consensus 180 DvVIs~~~----L~~~~d-------~~~~L~e~~r------------------vLkPGG~LvIi~ 215 (340)
T PLN02490 180 DRYVSAGS----IEYWPD-------PQRGIKEAYR------------------VLKIGGKACLIG 215 (340)
T ss_pred eEEEEcCh----hhhCCC-------HHHHHHHHHH------------------hcCCCcEEEEEE
Confidence 99998532 122222 3357888888 999999998753
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.2e-11 Score=108.62 Aligned_cols=114 Identities=21% Similarity=0.319 Sum_probs=77.3
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-----CCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-----CDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-----~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
.++.+|||+|||+|..+..+++.++ +.+|+|+|+|+.|+..+. ...++.++++|+.+++.. .+.+
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P----~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~------fede 486 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETE----DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSS------FEKE 486 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccc------cCCC
Confidence 4678999999999999999998864 589999999999976521 224577788887664311 0357
Q ss_pred CccEEEeCCCCCCCCCccc--chHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 113 GFSVILSDMCPSVSGITTK--DAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
+||+|+++...+....+.. ...........++..+.+ +|||||.++|..
T Consensus 487 SFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~R------------------VLKPGGrLII~D 537 (677)
T PRK06922 487 SVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYE------------------VLKPGGRIIIRD 537 (677)
T ss_pred CEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHH------------------HcCCCcEEEEEe
Confidence 8999998643110000000 000012345677888887 999999999974
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.8e-10 Score=92.76 Aligned_cols=95 Identities=18% Similarity=0.108 Sum_probs=63.3
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC---CCCCeEEEEeeecCCChhhHhhhCCCCCCc
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH---CDARVQTVSADVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~---~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~ 114 (186)
+++.+|||+|||+|.++..+++.....+++.+|+|+|+++.|+..+. ...++++...+...++. .+++|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~--------~~~~f 130 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVA--------EGERF 130 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccc--------cCCCc
Confidence 56779999999999999999876532212469999999999976532 22356666666544432 25689
Q ss_pred cEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcC
Q 038391 115 SVILSDMCPSVSGITTKDAALSVELGMRAVDLALG 149 (186)
Q Consensus 115 D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (186)
|+|+++.. .+.... .....++.++.+
T Consensus 131 D~V~~~~~-----lhh~~d----~~~~~~l~~~~r 156 (232)
T PRK06202 131 DVVTSNHF-----LHHLDD----AEVVRLLADSAA 156 (232)
T ss_pred cEEEECCe-----eecCCh----HHHHHHHHHHHH
Confidence 99999642 222221 123467777777
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.3e-11 Score=98.13 Aligned_cols=110 Identities=17% Similarity=0.193 Sum_probs=79.7
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
+++.+|||+|||.|.++..+++.++ +.+|+++|+++.+++.+ ....+++++.+|+.+.-.. .
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p----~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~-------~ 133 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLP----DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV-------H 133 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCC----CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh-------C
Confidence 4568999999999999999999875 58999999999997541 1246788998987643211 1
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
..+||+|++|... +.....+ -....++..+.+ .|+|||+|++.++..+
T Consensus 134 ~~~yD~I~~D~~~---~~~~~~~----l~t~efl~~~~~------------------~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 134 RHSTDVILVDGFD---GEGIIDA----LCTQPFFDDCRN------------------ALSSDGIFVVNLWSRD 181 (262)
T ss_pred CCCCCEEEEeCCC---CCCCccc----cCcHHHHHHHHH------------------hcCCCcEEEEEcCCCc
Confidence 3589999998621 1111110 113578888887 9999999999987654
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-10 Score=95.42 Aligned_cols=110 Identities=21% Similarity=0.219 Sum_probs=76.2
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
.+.+|||+|||+|.++..+++.++ ..+++|+|+++.++..+ ....+++++++|+.+.. +.+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~----~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---------~~~ 153 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERP----DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL---------PGG 153 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC---------cCC
Confidence 356999999999999999999864 47999999999997542 12236888888876421 246
Q ss_pred CccEEEeCCCCCCCCCc-ccch--------------HHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 113 GFSVILSDMCPSVSGIT-TKDA--------------ALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~-~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
+||+|++|+++...... .... .........++..+.+ +|+|||.+++
T Consensus 154 ~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~------------------~L~~gG~~~~ 215 (251)
T TIGR03534 154 KFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPR------------------LLKPGGWLLL 215 (251)
T ss_pred ceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHH------------------hcccCCEEEE
Confidence 89999998764322211 0000 0112223466777777 9999999998
Q ss_pred EE
Q 038391 178 KL 179 (186)
Q Consensus 178 ~~ 179 (186)
..
T Consensus 216 ~~ 217 (251)
T TIGR03534 216 EI 217 (251)
T ss_pred EE
Confidence 75
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-10 Score=97.55 Aligned_cols=107 Identities=15% Similarity=0.234 Sum_probs=72.1
Q ss_pred CCCEEEEEcccCCh----HHHHHHHHhCC-CCCCCeEEEEeCCCCCCCCcCC----------------------------
Q 038391 39 PGSSVLDLGCAPGA----WLQVACQSLGP-LDNGGSVVGIDVKKVKVPSLHC---------------------------- 85 (186)
Q Consensus 39 ~~~~vLDlGcG~G~----~~~~l~~~~~~-~~~~~~v~gvDis~~~i~~~~~---------------------------- 85 (186)
++.+|||+|||+|. ++..+++.++. ..++.+|+|+|+|+.|++.+..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45699999999996 45556665431 0124689999999999764221
Q ss_pred -----CCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCC
Q 038391 86 -----DARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNS 160 (186)
Q Consensus 86 -----~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (186)
..+++|.+.|+.+.+. +.++||+|+|.. ..+..+ ......++....+
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~--------~~~~fD~I~crn-----vl~yf~----~~~~~~~l~~l~~----------- 230 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESP--------PLGDFDLIFCRN-----VLIYFD----EPTQRKLLNRFAE----------- 230 (264)
T ss_pred EChHHhCcCEEeeccCCCCCC--------ccCCCCEEEech-----hHHhCC----HHHHHHHHHHHHH-----------
Confidence 1257888888876542 257899999942 122222 1235577777777
Q ss_pred CCCCCCcccccCcEEEEEEc
Q 038391 161 DSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 161 ~~~~~~~~LkpgG~lvi~~~ 180 (186)
.|+|||+|++..-
T Consensus 231 -------~L~pGG~L~lg~~ 243 (264)
T smart00138 231 -------ALKPGGYLFLGHS 243 (264)
T ss_pred -------HhCCCeEEEEECc
Confidence 9999999998643
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.3e-10 Score=96.59 Aligned_cols=99 Identities=24% Similarity=0.331 Sum_probs=68.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.+++.+|||+|||+|.++..+++. + ..+|+|+|+++.++..+ ....++.+...+....
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~-g----~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~---------- 221 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKL-G----AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP---------- 221 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHc-C----CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc----------
Confidence 357899999999999999887764 2 36899999999987542 2223344444432111
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
..++||+|++|.. . ......+..+.+ .|||||+|+++.+..
T Consensus 222 ~~~~fDlVvan~~--------~------~~l~~ll~~~~~------------------~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 222 IEGKADVIVANIL--------A------EVIKELYPQFSR------------------LVKPGGWLILSGILE 262 (288)
T ss_pred cCCCceEEEEecC--------H------HHHHHHHHHHHH------------------HcCCCcEEEEEeCcH
Confidence 2468999999652 1 113456666776 999999999987643
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.6e-10 Score=96.18 Aligned_cols=105 Identities=24% Similarity=0.265 Sum_probs=75.8
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC------CCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH------CDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~------~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
..+.+|||+|||.|.++..+++..+ ..+++.+|++...++.++ ...+..+...|..+.. .
T Consensus 157 ~~~~~vlDlGCG~Gvlg~~la~~~p----~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v----------~ 222 (300)
T COG2813 157 DLGGKVLDLGCGYGVLGLVLAKKSP----QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV----------E 222 (300)
T ss_pred cCCCcEEEeCCCccHHHHHHHHhCC----CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc----------c
Confidence 3455999999999999999999975 489999999999976522 1122245555554332 3
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
++||+|+||+|.+...... ..+..+.+..+.+ .|++||.|.|..=
T Consensus 223 ~kfd~IisNPPfh~G~~v~------~~~~~~~i~~A~~------------------~L~~gGeL~iVan 267 (300)
T COG2813 223 GKFDLIISNPPFHAGKAVV------HSLAQEIIAAAAR------------------HLKPGGELWIVAN 267 (300)
T ss_pred ccccEEEeCCCccCCcchh------HHHHHHHHHHHHH------------------hhccCCEEEEEEc
Confidence 4999999998865433222 2346677888887 9999999887653
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.9e-10 Score=91.42 Aligned_cols=74 Identities=20% Similarity=0.137 Sum_probs=54.7
Q ss_pred cCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhh
Q 038391 34 YKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 34 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
+..++++.+|||+|||+|.++..+++.. .+|+++|+++.++..+ ....++++..+|..+...
T Consensus 73 ~l~~~~~~~VLeiG~GsG~~t~~la~~~------~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~------ 140 (212)
T PRK00312 73 LLELKPGDRVLEIGTGSGYQAAVLAHLV------RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP------ 140 (212)
T ss_pred hcCCCCCCEEEEECCCccHHHHHHHHHh------CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC------
Confidence 3346788999999999999999888763 5899999999886541 122358888888654211
Q ss_pred CCCCCCccEEEeCC
Q 038391 108 SPKQKGFSVILSDM 121 (186)
Q Consensus 108 ~~~~~~~D~V~~d~ 121 (186)
..++||+|+++.
T Consensus 141 --~~~~fD~I~~~~ 152 (212)
T PRK00312 141 --AYAPFDRILVTA 152 (212)
T ss_pred --cCCCcCEEEEcc
Confidence 236899999965
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.8e-11 Score=94.31 Aligned_cols=101 Identities=22% Similarity=0.274 Sum_probs=69.5
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----CCCCCeEEEEeeecCCChhhHhhhCCCCCCcc
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----HCDARVQTVSADVINLPSNQVRALSPKQKGFS 115 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D 115 (186)
-.++||+|||.|.+|..++.+. .+++++|+++..++.+ ....++++.+.|+.... +.++||
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC------d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~---------P~~~FD 108 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC------DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFW---------PEGRFD 108 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE------EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT------------SS-EE
T ss_pred cceeEecCCCccHHHHHHHHhh------CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCC---------CCCCee
Confidence 4689999999999999999984 6899999999998652 33468999999886543 468999
Q ss_pred EEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 116 VILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 116 ~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+|++.- .+++..+ .+....++..+.. .|+|||.||+-.+.
T Consensus 109 LIV~SE----VlYYL~~----~~~L~~~l~~l~~------------------~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 109 LIVLSE----VLYYLDD----AEDLRAALDRLVA------------------ALAPGGHLVFGHAR 148 (201)
T ss_dssp EEEEES-----GGGSSS----HHHHHHHHHHHHH------------------TEEEEEEEEEEEE-
T ss_pred EEEEeh----HhHcCCC----HHHHHHHHHHHHH------------------HhCCCCEEEEEEec
Confidence 999832 2222222 2335566677776 89999999998764
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-10 Score=102.75 Aligned_cols=103 Identities=21% Similarity=0.248 Sum_probs=75.5
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----CCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----HCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
.++.+|||+|||+|.++..+++. ..+|+|+|+++.++..+ ....+++++++|+.....+ .+.++
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~------~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~------~~~~~ 103 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKK------AGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLN------ISDGS 103 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhh------CCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccC------CCCCC
Confidence 45679999999999999999987 36899999999998652 2235788999988643211 13578
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
||+|+++.+ ..+..+ .....++..+.+ .|||||+++++.
T Consensus 104 fD~I~~~~~----l~~l~~-----~~~~~~l~~~~r------------------~Lk~gG~l~~~d 142 (475)
T PLN02336 104 VDLIFSNWL----LMYLSD-----KEVENLAERMVK------------------WLKVGGYIFFRE 142 (475)
T ss_pred EEEEehhhh----HHhCCH-----HHHHHHHHHHHH------------------hcCCCeEEEEEe
Confidence 999999542 112111 124577777887 999999999874
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.3e-10 Score=94.67 Aligned_cols=105 Identities=16% Similarity=0.216 Sum_probs=74.0
Q ss_pred CCCEEEEEcccCChHHHHHH-HHhCCCCCCCeEEEEeCCCCCCCC--------cCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 39 PGSSVLDLGCAPGAWLQVAC-QSLGPLDNGGSVVGIDVKKVKVPS--------LHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~-~~~~~~~~~~~v~gvDis~~~i~~--------~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
++++|+|+|||+|.++..+. +...+ +++++|+|+++.++.. .....+++|.++|+.+...
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p---~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-------- 191 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLP---TTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE-------- 191 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCC---CCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc--------
Confidence 67899999999987655444 33332 6899999999999654 1234679999999876431
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
..+.||+|+++. .+..+. +.....++...+ .|+|||.|++..-+|
T Consensus 192 ~l~~FDlVF~~A------Li~~dk----~~k~~vL~~l~~------------------~LkPGG~Lvlr~~~G 236 (296)
T PLN03075 192 SLKEYDVVFLAA------LVGMDK----EEKVKVIEHLGK------------------HMAPGALLMLRSAHG 236 (296)
T ss_pred ccCCcCEEEEec------cccccc----ccHHHHHHHHHH------------------hcCCCcEEEEecccc
Confidence 136899999952 222211 114567777777 999999999987554
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.2e-10 Score=103.66 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=75.0
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
+.+|||+|||+|.++..++..++ +.+|+|+|+|+.++..+ ....+++++++|+.+.. +.+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p----~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~---------~~~ 205 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELP----NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI---------EKQ 205 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCC----CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC---------cCC
Confidence 46899999999999999998864 47999999999886541 22346888888864321 245
Q ss_pred CccEEEeCCCCCCCCCc------ccch---------HHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 113 GFSVILSDMCPSVSGIT------TKDA---------ALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
+||+|++|++.-..... ..++ ....+.....+..+.+ +|+|||.+++
T Consensus 206 ~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~------------------~L~~gG~l~l 267 (506)
T PRK01544 206 KFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQ------------------FLKPNGKIIL 267 (506)
T ss_pred CccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHH------------------hccCCCEEEE
Confidence 89999999763221110 0001 1123344556666666 9999999998
Q ss_pred EE
Q 038391 178 KL 179 (186)
Q Consensus 178 ~~ 179 (186)
.+
T Consensus 268 Ei 269 (506)
T PRK01544 268 EI 269 (506)
T ss_pred EE
Confidence 65
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.4e-10 Score=96.43 Aligned_cols=74 Identities=20% Similarity=0.195 Sum_probs=56.4
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.++++.+|||+|||+|.++..+++..+. .++|+++|+++.+++.+ ....++.++++|+.....
T Consensus 77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~---~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~-------- 145 (322)
T PRK13943 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGE---KGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP-------- 145 (322)
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHhcCC---CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc--------
Confidence 3678899999999999999999998753 36899999999986431 123468888888654322
Q ss_pred CCCCccEEEeC
Q 038391 110 KQKGFSVILSD 120 (186)
Q Consensus 110 ~~~~~D~V~~d 120 (186)
...+||+|+++
T Consensus 146 ~~~~fD~Ii~~ 156 (322)
T PRK13943 146 EFAPYDVIFVT 156 (322)
T ss_pred ccCCccEEEEC
Confidence 13579999984
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.6e-10 Score=88.82 Aligned_cols=103 Identities=18% Similarity=0.199 Sum_probs=72.4
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.++++.+|||+|||+|.++..+++..+ +++|+++|+++.++... ....+++++.+|+.+. +..+
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~----~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~----~~~~-- 106 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCP----KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPEC----LAQL-- 106 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHH----HhhC--
Confidence 467889999999999999999987643 47999999999996541 1224688888877431 1111
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
...+|.++.+.. .. ....+..+.+ .|+|||.+++....-
T Consensus 107 -~~~~d~v~~~~~--------~~-------~~~~l~~~~~------------------~LkpgG~li~~~~~~ 145 (196)
T PRK07402 107 -APAPDRVCIEGG--------RP-------IKEILQAVWQ------------------YLKPGGRLVATASSL 145 (196)
T ss_pred -CCCCCEEEEECC--------cC-------HHHHHHHHHH------------------hcCCCeEEEEEeecH
Confidence 234677766321 01 3467777777 999999999987653
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.2e-11 Score=100.06 Aligned_cols=114 Identities=24% Similarity=0.294 Sum_probs=83.0
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------------CCCCCeEEEEeeecCCChhhHh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------------HCDARVQTVSADVINLPSNQVR 105 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------------~~~~~~~~~~~d~~~~~~~~l~ 105 (186)
+++..++|||||.|+.++-.-.. +-+.++|+||...-|..+ .....+.|+.+|++......+-
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kA-----gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~ 190 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKA-----GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLL 190 (389)
T ss_pred ccccccceeccCCcccHhHhhhh-----cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhc
Confidence 78899999999999988777654 246999999999887651 1223578999999876533222
Q ss_pred hhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 106 ALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 106 ~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
+ .++.+||+|-|-.++|+. ..+.+....++.++.+ +|||||+++-++-.++
T Consensus 191 e--~~dp~fDivScQF~~HYa-------Fetee~ar~~l~Nva~------------------~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 191 E--FKDPRFDIVSCQFAFHYA-------FETEESARIALRNVAK------------------CLKPGGVFIGTIPDSD 241 (389)
T ss_pred c--CCCCCcceeeeeeeEeee-------eccHHHHHHHHHHHHh------------------hcCCCcEEEEecCcHH
Confidence 1 224459999886554332 2345667788888888 9999999998876653
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.8e-10 Score=106.63 Aligned_cols=112 Identities=18% Similarity=0.177 Sum_probs=77.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCC-CCeEEEEeeecCCChhhHhhhCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCD-ARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~-~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.++.+|||+|||+|.++..++.. + ..+|+++|+|+.+++. +... .+++++++|+.+.. ..+
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-G----a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l----~~~-- 605 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-G----AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWL----KEA-- 605 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-C----CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHH----HHc--
Confidence 35889999999999999999985 2 3479999999999754 2222 47899999986432 111
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
+++||+|++|++.........+...........+..+.+ +|+|||.|++..
T Consensus 606 -~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~------------------lL~~gG~l~~~~ 656 (702)
T PRK11783 606 -REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKR------------------LLRPGGTLYFSN 656 (702)
T ss_pred -CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHH------------------HcCCCCEEEEEe
Confidence 468999999976433221111112223334456666666 999999998754
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.4e-11 Score=99.15 Aligned_cols=102 Identities=27% Similarity=0.446 Sum_probs=67.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEE----eeecCCChhhHhhhCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVS----ADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~----~d~~~~~~~~l~~~~~~~~ 112 (186)
.+++.+|||+|||+|.+++..++. |..+|+|+|+.|..+..++...+.+.+. .-..+.... . ..+
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kL-----GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~-----~-~~~ 228 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKL-----GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV-----P-ENG 228 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHc-----CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh-----c-ccC
Confidence 358999999999999999988886 2357999999999976532221111111 111111111 0 246
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+||+|++|. ... ..........+ .|||||+++++-+-
T Consensus 229 ~~DvIVANI------LA~--------vl~~La~~~~~------------------~lkpgg~lIlSGIl 265 (300)
T COG2264 229 PFDVIVANI------LAE--------VLVELAPDIKR------------------LLKPGGRLILSGIL 265 (300)
T ss_pred cccEEEehh------hHH--------HHHHHHHHHHH------------------HcCCCceEEEEeeh
Confidence 999999975 122 24466666666 99999999998653
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=5e-10 Score=95.08 Aligned_cols=110 Identities=17% Similarity=0.163 Sum_probs=70.5
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
++++.+|||+|||+|.++..+++.+.. +.+|+++|+|+.|+..+ ....++.++++|+.+... .....
T Consensus 61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~---~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~-~~~~~-- 134 (301)
T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALRQ---PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLA-LPPEP-- 134 (301)
T ss_pred hCCCCeEEecCCCcchhHHHHHHhhcc---CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh-hhccc--
Confidence 567789999999999999999998742 47899999999997542 122356778999875321 00000
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
......+++++ ...+.... +....++..+.+ .|+|||.|+|.+
T Consensus 135 ~~~~~~~~~~g-----s~~~~~~~----~e~~~~L~~i~~------------------~L~pgG~~lig~ 177 (301)
T TIGR03438 135 AAGRRLGFFPG-----STIGNFTP----EEAVAFLRRIRQ------------------LLGPGGGLLIGV 177 (301)
T ss_pred ccCCeEEEEec-----ccccCCCH----HHHHHHHHHHHH------------------hcCCCCEEEEec
Confidence 00112233332 11222222 224567777777 999999999754
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.08 E-value=5e-10 Score=94.66 Aligned_cols=118 Identities=24% Similarity=0.293 Sum_probs=80.2
Q ss_pred hhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----c--CCCCCeEEE
Q 038391 20 VARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----L--HCDARVQTV 92 (186)
Q Consensus 20 ~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~--~~~~~~~~~ 92 (186)
..||.+|...+..++..+ .|++|||||||+|+++..++.+ +...|+|+|.++..... . .....+.++
T Consensus 97 EWrSd~KW~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~-----GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~l 170 (315)
T PF08003_consen 97 EWRSDWKWDRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGR-----GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFEL 170 (315)
T ss_pred cccccchHHHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhc-----CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEc
Confidence 456777777777776533 5889999999999999999987 23589999999876432 1 111112222
Q ss_pred EeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccC
Q 038391 93 SADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPG 172 (186)
Q Consensus 93 ~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lkpg 172 (186)
.. .+++++. .+.||+|+|.+ ...|..+ ....+..... .|+||
T Consensus 171 pl--------gvE~Lp~-~~~FDtVF~MG----VLYHrr~-------Pl~~L~~Lk~------------------~L~~g 212 (315)
T PF08003_consen 171 PL--------GVEDLPN-LGAFDTVFSMG----VLYHRRS-------PLDHLKQLKD------------------SLRPG 212 (315)
T ss_pred Cc--------chhhccc-cCCcCEEEEee----ehhccCC-------HHHHHHHHHH------------------hhCCC
Confidence 11 2233332 46899999943 4566666 4456666666 89999
Q ss_pred cEEEEEEcc
Q 038391 173 GHLVIKLLE 181 (186)
Q Consensus 173 G~lvi~~~~ 181 (186)
|.||+.++-
T Consensus 213 GeLvLETlv 221 (315)
T PF08003_consen 213 GELVLETLV 221 (315)
T ss_pred CEEEEEEee
Confidence 999998874
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.1e-10 Score=86.24 Aligned_cols=110 Identities=25% Similarity=0.319 Sum_probs=73.4
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCC-CCeEEEEeeecCCChhhHhhhCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCD-ARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~-~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.++.+|||+|||+|.++..++.. +.+|+|+|+++.++... ... .++.+++.|+.+..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--------- 86 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN------GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF--------- 86 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh------cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc---------
Confidence 57889999999999999999987 47999999999886542 111 12777888765432
Q ss_pred CCCCccEEEeCCCCCCCCC-cc---------cchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 110 KQKGFSVILSDMCPSVSGI-TT---------KDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
...+||+|++|.+...... .. ............++..+.+ +|||||.+++.+
T Consensus 87 ~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------------------~Lk~gG~~~~~~ 148 (188)
T PRK14968 87 RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGR------------------YLKPGGRILLLQ 148 (188)
T ss_pred cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHH------------------hcCCCeEEEEEE
Confidence 2348999999865322110 00 0000112334566777777 999999988765
Q ss_pred c
Q 038391 180 L 180 (186)
Q Consensus 180 ~ 180 (186)
-
T Consensus 149 ~ 149 (188)
T PRK14968 149 S 149 (188)
T ss_pred c
Confidence 4
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.5e-10 Score=91.55 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=58.1
Q ss_pred HHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCCh
Q 038391 28 LQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPS 101 (186)
Q Consensus 28 ~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~ 101 (186)
..++.... +++|.+|||+|||+|+.+..++...+. .++|++||+.+.....+ ....++.++++|......
T Consensus 62 a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~---~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~ 137 (209)
T PF01135_consen 62 ARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGP---VGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP 137 (209)
T ss_dssp HHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHST---TEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG
T ss_pred HHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCc---cceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc
Confidence 33444433 899999999999999999999999875 46899999999886541 123489999999765432
Q ss_pred hhHhhhCCCCCCccEEEeCC
Q 038391 102 NQVRALSPKQKGFSVILSDM 121 (186)
Q Consensus 102 ~~l~~~~~~~~~~D~V~~d~ 121 (186)
. ...||.|++..
T Consensus 138 ~--------~apfD~I~v~~ 149 (209)
T PF01135_consen 138 E--------EAPFDRIIVTA 149 (209)
T ss_dssp G--------G-SEEEEEESS
T ss_pred c--------CCCcCEEEEee
Confidence 2 45899999954
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.3e-10 Score=99.10 Aligned_cols=109 Identities=18% Similarity=0.243 Sum_probs=78.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
..+..+||||||+|.++..+++..+ ...++|+|+++.++.. .....++.++++|+..+.. .+ +.
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P----~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~----~~--~~ 190 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNP----NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLE----LL--PS 190 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCC----CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhh----hC--CC
Confidence 4467999999999999999999975 4899999999988654 1223579999998764321 11 46
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
+++|.|+++.+.+. ...... .-....++.++.+ +|+|||.+.+++
T Consensus 191 ~s~D~I~lnFPdPW----~KkrHR-Rlv~~~fL~e~~R------------------vLkpGG~l~l~T 235 (390)
T PRK14121 191 NSVEKIFVHFPVPW----DKKPHR-RVISEDFLNEALR------------------VLKPGGTLELRT 235 (390)
T ss_pred CceeEEEEeCCCCc----cccchh-hccHHHHHHHHHH------------------HcCCCcEEEEEE
Confidence 79999999764221 111100 0113577888888 999999999875
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.4e-10 Score=96.34 Aligned_cols=106 Identities=20% Similarity=0.190 Sum_probs=76.0
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----------CCCCCeEEEEeeecCCChhhHhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----------HCDARVQTVSADVINLPSNQVRA 106 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----------~~~~~~~~~~~d~~~~~~~~l~~ 106 (186)
+..++||++|||.|..+..++++.+ ..+|++||+++.+++.+ ...++++++.+|+......
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~----~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~---- 146 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPS----VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE---- 146 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCC----CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh----
Confidence 4567999999999999999998632 36899999999986441 1356889999987653211
Q ss_pred hCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 107 LSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 107 ~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
..++||+|++|.+.+..... .-....++..+.+ .|+|||.+++..
T Consensus 147 ---~~~~yDvIi~D~~dp~~~~~-------~l~t~ef~~~~~~------------------~L~~gGvlv~~~ 191 (283)
T PRK00811 147 ---TENSFDVIIVDSTDPVGPAE-------GLFTKEFYENCKR------------------ALKEDGIFVAQS 191 (283)
T ss_pred ---CCCcccEEEECCCCCCCchh-------hhhHHHHHHHHHH------------------hcCCCcEEEEeC
Confidence 25689999998753321110 1123567777777 999999999863
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.9e-10 Score=86.90 Aligned_cols=101 Identities=22% Similarity=0.301 Sum_probs=76.8
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.++++.+++|+|||+|..+..++ ..++ .++||+||-+++++.. +....++..+.+++-+....
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a-~~~p---~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~------- 99 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWA-LAGP---SGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPD------- 99 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHH-HhCC---CceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcC-------
Confidence 36889999999999999999999 4444 6999999999998654 23467899999987543211
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
-.+||.|+.. |... ....++.+.. .|||||++|++...
T Consensus 100 -~~~~daiFIG------Gg~~---------i~~ile~~~~------------------~l~~ggrlV~nait 137 (187)
T COG2242 100 -LPSPDAIFIG------GGGN---------IEEILEAAWE------------------RLKPGGRLVANAIT 137 (187)
T ss_pred -CCCCCEEEEC------CCCC---------HHHHHHHHHH------------------HcCcCCeEEEEeec
Confidence 1279999983 3333 3467777777 89999999987643
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.1e-10 Score=93.77 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=57.2
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-CCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-CDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
+...+|||+|||+|.++..++.+.+ +.+|+|+|+++.++..++ ...+++++++|+.+.. ...+||+
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~----~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~---------~~~kFDl 129 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCK----PEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE---------SNEKFDV 129 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc---------ccCCCcE
Confidence 4467999999999999999888753 369999999999976532 2346888888886543 2458999
Q ss_pred EEeCCCCC
Q 038391 117 ILSDMCPS 124 (186)
Q Consensus 117 V~~d~~~~ 124 (186)
|++|++..
T Consensus 130 IIsNPPF~ 137 (279)
T PHA03411 130 VISNPPFG 137 (279)
T ss_pred EEEcCCcc
Confidence 99998643
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.1e-10 Score=89.54 Aligned_cols=76 Identities=22% Similarity=0.366 Sum_probs=59.2
Q ss_pred HcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 33 QYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 33 ~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
...++++|.+|||+|||.|.+..++.+.- +.+.+|+|+++..+..... ..++++++|+... +..+ +++
T Consensus 7 I~~~I~pgsrVLDLGCGdG~LL~~L~~~k-----~v~g~GvEid~~~v~~cv~-rGv~Viq~Dld~g----L~~f--~d~ 74 (193)
T PF07021_consen 7 IAEWIEPGSRVLDLGCGDGELLAYLKDEK-----QVDGYGVEIDPDNVAACVA-RGVSVIQGDLDEG----LADF--PDQ 74 (193)
T ss_pred HHHHcCCCCEEEecCCCchHHHHHHHHhc-----CCeEEEEecCHHHHHHHHH-cCCCEEECCHHHh----HhhC--CCC
Confidence 34468999999999999999999999863 5899999999998654221 2477899988653 2233 578
Q ss_pred CccEEEeC
Q 038391 113 GFSVILSD 120 (186)
Q Consensus 113 ~~D~V~~d 120 (186)
+||.||.+
T Consensus 75 sFD~VIls 82 (193)
T PF07021_consen 75 SFDYVILS 82 (193)
T ss_pred CccEEehH
Confidence 99999984
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-09 Score=91.85 Aligned_cols=107 Identities=22% Similarity=0.269 Sum_probs=75.2
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCCCCCCc
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~ 114 (186)
+|||+|||+|.++..++...+ ..+|+|+|+|+.++..+ .. .++.+++.|..+.. .++|
T Consensus 113 ~ilDlGTGSG~iai~la~~~~----~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~----------~~~f 177 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP----DAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPL----------RGKF 177 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc----CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeeccccc----------CCce
Confidence 799999999999999999875 37999999999987542 22 45566666554321 3499
Q ss_pred cEEEeCCCCCCCCC-c-------------ccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 115 SVILSDMCPSVSGI-T-------------TKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 115 D~V~~d~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
|+|++|+|.-.... . ........+.....+..+.. .|+|||.+++.+=
T Consensus 178 DlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~------------------~l~~~g~l~le~g 239 (280)
T COG2890 178 DLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPD------------------ILKPGGVLILEIG 239 (280)
T ss_pred eEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHH------------------HcCCCcEEEEEEC
Confidence 99999986322220 0 00111345566777777777 9999999998764
Q ss_pred c
Q 038391 181 E 181 (186)
Q Consensus 181 ~ 181 (186)
.
T Consensus 240 ~ 240 (280)
T COG2890 240 L 240 (280)
T ss_pred C
Confidence 3
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.5e-10 Score=91.09 Aligned_cols=76 Identities=26% Similarity=0.428 Sum_probs=59.8
Q ss_pred hhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-cCCCCCeE-EEEeee
Q 038391 19 YVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-LHCDARVQ-TVSADV 96 (186)
Q Consensus 19 y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-~~~~~~~~-~~~~d~ 96 (186)
|++|.+++|.+++..+....++.++||+|||||+++..+++. + ..+|+|+|+++.|+.. .....++. +...|+
T Consensus 55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-g----a~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni 129 (228)
T TIGR00478 55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-G----AKEVYGVDVGYNQLAEKLRQDERVKVLERTNI 129 (228)
T ss_pred hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-C----CCEEEEEeCCHHHHHHHHhcCCCeeEeecCCc
Confidence 999999999999999886567889999999999999999997 2 3689999999987654 33444543 334455
Q ss_pred cCC
Q 038391 97 INL 99 (186)
Q Consensus 97 ~~~ 99 (186)
...
T Consensus 130 ~~~ 132 (228)
T TIGR00478 130 RYV 132 (228)
T ss_pred ccC
Confidence 543
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-09 Score=90.28 Aligned_cols=97 Identities=26% Similarity=0.445 Sum_probs=63.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCC---CCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCD---ARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~---~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
++++.+|||+|||+|.++..++.. + ..+|+|+|+++.++..+... .++. ..+ .+.. .+.+
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g----~~~v~giDis~~~l~~A~~n~~~~~~~---~~~-~~~~--------~~~~ 179 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-G----AKKVLAVDIDPQAVEAARENAELNGVE---LNV-YLPQ--------GDLK 179 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-C----CCeEEEEECCHHHHHHHHHHHHHcCCC---ceE-EEcc--------CCCC
Confidence 467899999999999988876664 2 24699999999997652211 1110 000 0000 1127
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
||+|+++.. . +.....+..+.+ +|||||++++..+..
T Consensus 180 fD~Vvani~------~--------~~~~~l~~~~~~------------------~LkpgG~lilsgi~~ 216 (250)
T PRK00517 180 ADVIVANIL------A--------NPLLELAPDLAR------------------LLKPGGRLILSGILE 216 (250)
T ss_pred cCEEEEcCc------H--------HHHHHHHHHHHH------------------hcCCCcEEEEEECcH
Confidence 999999642 1 113456666777 999999999986543
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.9e-10 Score=94.04 Aligned_cols=116 Identities=28% Similarity=0.375 Sum_probs=84.5
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
..++..|||+|||+|+.|.++++.+++ .+.|+++|+++.++.. .....++.....|........ .
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~---~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~------~ 153 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGN---KGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKK------P 153 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTT---TSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHH------H
T ss_pred ccccccccccccCCCCceeeeeecccc---hhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccc------c
Confidence 578999999999999999999999975 6899999999988644 222345666666665442221 1
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHH-----------HHHHHHHHHHcCCcccCCCCCCCCCCCCCccc----ccCcEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSV-----------ELGMRAVDLALGPAALASPVNNSDSSTDSGVL----KPGGHL 175 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L----kpgG~l 175 (186)
...||.|++|.+|+..|....+..... ++....+..+.+ .+ ||||++
T Consensus 154 ~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~------------------~~~~~~k~gG~l 215 (283)
T PF01189_consen 154 ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAK------------------LLNIDFKPGGRL 215 (283)
T ss_dssp TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHH------------------CEHHHBEEEEEE
T ss_pred ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHH------------------hhcccccCCCeE
Confidence 346999999999999887665543332 234455555555 99 999999
Q ss_pred EEEE
Q 038391 176 VIKL 179 (186)
Q Consensus 176 vi~~ 179 (186)
|-++
T Consensus 216 vYsT 219 (283)
T PF01189_consen 216 VYST 219 (283)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9664
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-09 Score=88.40 Aligned_cols=103 Identities=21% Similarity=0.306 Sum_probs=70.8
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-----CCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-----CDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-----~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
..++.+|||+|||+|.++..+++. +.+|+++|+++.++..+. ...++++...++...... ..
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 112 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARL------GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAE-------HP 112 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc------CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhh-------cC
Confidence 456889999999999999988876 478999999999865421 122456666655433211 24
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
++||+|++... ..+..+ ....+..+.+ +|+|||.+++..+.
T Consensus 113 ~~fD~Ii~~~~----l~~~~~-------~~~~l~~~~~------------------~L~~gG~l~v~~~~ 153 (233)
T PRK05134 113 GQFDVVTCMEM----LEHVPD-------PASFVRACAK------------------LVKPGGLVFFSTLN 153 (233)
T ss_pred CCccEEEEhhH----hhccCC-------HHHHHHHHHH------------------HcCCCcEEEEEecC
Confidence 68999998431 111122 3356677777 99999999988654
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=89.92 Aligned_cols=102 Identities=19% Similarity=0.276 Sum_probs=74.9
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
+.++.+|||+|||+|+.+..++..++. +++|+++|+++.++.. .....+++++.+|+.+. +..+..
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~---~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~----L~~l~~ 138 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPE---DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA----LDQLLN 138 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH----HHHHHh
Confidence 456789999999999999999988764 5899999999988543 33446789999988653 222211
Q ss_pred --CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 110 --KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 110 --~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
+.++||+|+.|... ......+..+.+ +|||||.+++
T Consensus 139 ~~~~~~fD~VfiDa~k--------------~~y~~~~~~~~~------------------ll~~GG~ii~ 176 (234)
T PLN02781 139 NDPKPEFDFAFVDADK--------------PNYVHFHEQLLK------------------LVKVGGIIAF 176 (234)
T ss_pred CCCCCCCCEEEECCCH--------------HHHHHHHHHHHH------------------hcCCCeEEEE
Confidence 14689999997531 113345666677 9999999887
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-09 Score=95.50 Aligned_cols=112 Identities=22% Similarity=0.221 Sum_probs=73.2
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCC-CCeEEEEeeecCCChhhHhhhCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCD-ARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~-~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.++++|||+|||+|+++..++.. +..+|+++|+++.++.. +... .+++++++|+.+.. ..+..
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-----ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l----~~~~~ 289 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-----GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLL----RTYRD 289 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-----CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHH----HHHHh
Confidence 46889999999999998876643 13599999999999754 2222 36889999986532 22211
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
.+++||+|++|++.-..... ............+..+.+ +|+|||.|+.-
T Consensus 290 ~~~~fDlVilDPP~f~~~k~--~l~~~~~~y~~l~~~a~~------------------lLk~gG~lv~~ 338 (396)
T PRK15128 290 RGEKFDVIVMDPPKFVENKS--QLMGACRGYKDINMLAIQ------------------LLNPGGILLTF 338 (396)
T ss_pred cCCCCCEEEECCCCCCCChH--HHHHHHHHHHHHHHHHHH------------------HcCCCeEEEEE
Confidence 24689999999864221111 111111223344555666 99999999864
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=89.54 Aligned_cols=142 Identities=16% Similarity=0.164 Sum_probs=93.1
Q ss_pred CCCCCChHHHHHHhhchhh--hhHH-hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC
Q 038391 3 GVGAPDFFYREAQRLGYVA--RSAF-KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK 79 (186)
Q Consensus 3 ~~~~~~~~~~~~~~~~y~~--r~~~-~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~ 79 (186)
+....++|....+...+-. ...- .|.+...... ..++.+||+.|||.|.....|+++ |.+|+|+|+|+..
T Consensus 5 ~~~~~~fW~~rw~~~~~~f~~~~pnp~L~~~~~~l~-~~~~~rvLvPgCGkg~D~~~LA~~------G~~V~GvDlS~~A 77 (226)
T PRK13256 5 ETNNNQYWLDRWQNDDVGFCQESPNEFLVKHFSKLN-INDSSVCLIPMCGCSIDMLFFLSK------GVKVIGIELSEKA 77 (226)
T ss_pred ccCCHHHHHHHHhcCCCCCccCCCCHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHhC------CCcEEEEecCHHH
Confidence 4455677877665543221 1111 2333333322 345789999999999999999998 6899999999988
Q ss_pred CCCc------------------CCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHH
Q 038391 80 VPSL------------------HCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGM 141 (186)
Q Consensus 80 i~~~------------------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~ 141 (186)
++.. ....++++.++|+.+++... ...++||.|+--.+ ..... .++..
T Consensus 78 i~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~-----~~~~~fD~VyDra~-----~~Alp----p~~R~ 143 (226)
T PRK13256 78 VLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA-----NNLPVFDIWYDRGA-----YIALP----NDLRT 143 (226)
T ss_pred HHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc-----cccCCcCeeeeehh-----HhcCC----HHHHH
Confidence 7541 12347899999998875310 02358999876321 22222 24455
Q ss_pred HHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 142 RAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
..++.+.+ +|+|||.+++-+|+-+
T Consensus 144 ~Y~~~l~~------------------lL~pgg~llll~~~~~ 167 (226)
T PRK13256 144 NYAKMMLE------------------VCSNNTQILLLVMEHD 167 (226)
T ss_pred HHHHHHHH------------------HhCCCcEEEEEEEecC
Confidence 66666776 9999999999888643
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.3e-09 Score=90.91 Aligned_cols=102 Identities=12% Similarity=0.147 Sum_probs=73.8
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
++++.+|||+|||+|.++..++++++ ..+++++|. +.+++. .....+++++.+|+.+...
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p----~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~-------- 213 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFP----ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-------- 213 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCC----CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC--------
Confidence 56778999999999999999999975 489999997 555433 2344679999999875431
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
..+|+|+... ..|.... +.....+..+.+ .|||||+++|..+
T Consensus 214 --~~~D~v~~~~-----~lh~~~~----~~~~~il~~~~~------------------~L~pgG~l~i~d~ 255 (306)
T TIGR02716 214 --PEADAVLFCR-----ILYSANE----QLSTIMCKKAFD------------------AMRSGGRLLILDM 255 (306)
T ss_pred --CCCCEEEeEh-----hhhcCCh----HHHHHHHHHHHH------------------hcCCCCEEEEEEe
Confidence 2369887622 2232221 234567777887 9999999998854
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.5e-10 Score=93.91 Aligned_cols=98 Identities=26% Similarity=0.472 Sum_probs=64.5
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.++|.+|||+|||+|.+++..++. + ..+|+|+|+++..+.. +....++... ...+.
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~kl-G----A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~---------- 221 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKL-G----AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL---------- 221 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHT-T----BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT----------
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHc-C----CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc----------
Confidence 468899999999999998888886 3 3689999999998654 2333344331 11111
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
...+||+|++|.- .. ..........+ .|+|||+|+++-+-.+
T Consensus 222 ~~~~~dlvvANI~------~~--------vL~~l~~~~~~------------------~l~~~G~lIlSGIl~~ 263 (295)
T PF06325_consen 222 VEGKFDLVVANIL------AD--------VLLELAPDIAS------------------LLKPGGYLILSGILEE 263 (295)
T ss_dssp CCS-EEEEEEES-------HH--------HHHHHHHHCHH------------------HEEEEEEEEEEEEEGG
T ss_pred ccccCCEEEECCC------HH--------HHHHHHHHHHH------------------hhCCCCEEEEccccHH
Confidence 2479999999752 11 13344444555 8999999999876543
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.3e-09 Score=86.52 Aligned_cols=66 Identities=23% Similarity=0.375 Sum_probs=51.8
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-------CCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-------CDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-------~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
..++.+|||+|||+|.++..++.. +.+|+|+|+++.|+..++ ...++.+.++|+.+.
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~------~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---------- 116 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR------GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL---------- 116 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC----------
Confidence 456889999999999999999886 469999999999975421 123678888877543
Q ss_pred CCCCccEEEe
Q 038391 110 KQKGFSVILS 119 (186)
Q Consensus 110 ~~~~~D~V~~ 119 (186)
.++||+|++
T Consensus 117 -~~~fD~ii~ 125 (219)
T TIGR02021 117 -CGEFDIVVC 125 (219)
T ss_pred -CCCcCEEEE
Confidence 258999988
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=6e-10 Score=87.91 Aligned_cols=110 Identities=18% Similarity=0.209 Sum_probs=72.5
Q ss_pred CCC-CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhC
Q 038391 37 IKP-GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 37 ~~~-~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
+.+ ..+|||||||+|.++..+++.-.. +..+|+|.|+..+..+ .....++|.+.|+.....
T Consensus 64 v~~~A~~VlDLGtGNG~~L~~L~~egf~----~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~------- 132 (227)
T KOG1271|consen 64 VSKQADRVLDLGTGNGHLLFQLAKEGFQ----SKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDF------- 132 (227)
T ss_pred hcccccceeeccCCchHHHHHHHHhcCC----CCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcc-------
Confidence 444 349999999999999999987332 5699999999986541 233349999999987642
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
..++||+|+--+..+..+.+-..... ....-+....+ +|+|||+|+|.-
T Consensus 133 -~~~qfdlvlDKGT~DAisLs~d~~~~---r~~~Y~d~v~~------------------ll~~~gifvItS 181 (227)
T KOG1271|consen 133 -LSGQFDLVLDKGTLDAISLSPDGPVG---RLVVYLDSVEK------------------LLSPGGIFVITS 181 (227)
T ss_pred -cccceeEEeecCceeeeecCCCCccc---ceeeehhhHhh------------------ccCCCcEEEEEe
Confidence 25789999864432222222111100 01233444455 999999999974
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.5e-10 Score=90.63 Aligned_cols=101 Identities=12% Similarity=0.060 Sum_probs=67.4
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-CCCCeEEEEeeecCCChhhHhhhCCCCCCccEE
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-CDARVQTVSADVINLPSNQVRALSPKQKGFSVI 117 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V 117 (186)
.+.+|||+|||+|.++..+++.+... +..+|+++|+++.++..++ ...++.++++|+.... ...+||+|
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~-~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~---------~~~~FDlI 118 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYA-KPREIVCVELNHTYYKLGKRIVPEATWINADALTTE---------FDTLFDMA 118 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccC-CCcEEEEEECCHHHHHHHHhhccCCEEEEcchhccc---------ccCCccEE
Confidence 36799999999999999999875310 1368999999999976532 2346788888876432 13589999
Q ss_pred EeCCCCCCCCCccc-chHHHHHHHHHHHHHHcC
Q 038391 118 LSDMCPSVSGITTK-DAALSVELGMRAVDLALG 149 (186)
Q Consensus 118 ~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 149 (186)
|+|+|......... ...........++..+.+
T Consensus 119 IsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~ 151 (241)
T PHA03412 119 ISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQ 151 (241)
T ss_pred EECCCCCCccccccCCcccccHHHHHHHHHHHH
Confidence 99987543221111 111123445566776666
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.9e-09 Score=84.84 Aligned_cols=107 Identities=12% Similarity=0.109 Sum_probs=70.2
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.++.+|||+|||+|.++..++.+. ..+|+++|+++..++.. ....+++++++|+.+... . ..
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~-----a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~----~---~~ 119 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY-----AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLA----Q---PG 119 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC-----CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHh----h---cC
Confidence 467899999999999998765552 36999999999885431 112468888888754211 1 23
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
.+||+|++|+|... +. .+.....+.. .. +|+|++.+++.+-..++
T Consensus 120 ~~fDlV~~DPPy~~-g~--------~~~~l~~l~~-~~------------------~l~~~~iv~ve~~~~~~ 164 (199)
T PRK10909 120 TPHNVVFVDPPFRK-GL--------LEETINLLED-NG------------------WLADEALIYVESEVENG 164 (199)
T ss_pred CCceEEEECCCCCC-Ch--------HHHHHHHHHH-CC------------------CcCCCcEEEEEecCCCC
Confidence 57999999986321 11 1112222222 12 68999999998766544
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.6e-09 Score=93.34 Aligned_cols=117 Identities=22% Similarity=0.266 Sum_probs=83.5
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
.++|++|||+||.||+.|.++|..|.+ .+.|++.|.+...+.. .....+......|...++... .+
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn---~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~-----~~ 310 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKN---TGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKE-----FP 310 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcC---CceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccc-----cC
Confidence 378999999999999999999999986 6899999999988654 122345555556665544222 12
Q ss_pred CCCccEEEeCCCCCCCCCcccchH-----------HHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAA-----------LSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
+ +||-|+.|++|+.+|.-..+.. .-..+.+..+..+.. ++++||+||-++
T Consensus 311 ~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~------------------lv~~GGvLVYST 371 (460)
T KOG1122|consen 311 G-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAID------------------LVKAGGVLVYST 371 (460)
T ss_pred c-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHh------------------hccCCcEEEEEe
Confidence 3 8999999999998776443321 112244455555555 999999999665
Q ss_pred c
Q 038391 180 L 180 (186)
Q Consensus 180 ~ 180 (186)
=
T Consensus 372 C 372 (460)
T KOG1122|consen 372 C 372 (460)
T ss_pred e
Confidence 3
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.9e-09 Score=104.37 Aligned_cols=113 Identities=19% Similarity=0.253 Sum_probs=77.8
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------C---------------CCCCeEEEEeeec
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------H---------------CDARVQTVSADVI 97 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~---------------~~~~~~~~~~d~~ 97 (186)
+.+|||+|||+|.++..+++.++ ..+|+|+|+|+.++..+ . ...+++++++|+.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~----~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~ 194 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL----PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLL 194 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchh
Confidence 46899999999999999999875 37999999999996431 1 1246899999986
Q ss_pred CCChhhHhhhCCCCCCccEEEeCCCCCCCCC----------c-------------ccc----hHHHHHHHHHHHHHHcCC
Q 038391 98 NLPSNQVRALSPKQKGFSVILSDMCPSVSGI----------T-------------TKD----AALSVELGMRAVDLALGP 150 (186)
Q Consensus 98 ~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~----------~-------------~~~----~~~~~~~~~~~~~~~~~~ 150 (186)
+.... .+.+||+|++|++.=..+. + ..+ ........+..+..+.+
T Consensus 195 ~~~~~-------~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~- 266 (1082)
T PLN02672 195 GYCRD-------NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIS- 266 (1082)
T ss_pred hhccc-------cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHH-
Confidence 53211 1237999999976211110 0 000 13344555667777776
Q ss_pred cccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 151 AALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
.|+|||.+++.+=.
T Consensus 267 -----------------~L~pgG~l~lEiG~ 280 (1082)
T PLN02672 267 -----------------VIKPMGIMIFNMGG 280 (1082)
T ss_pred -----------------hccCCCEEEEEECc
Confidence 99999999988643
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.4e-09 Score=92.02 Aligned_cols=121 Identities=27% Similarity=0.291 Sum_probs=89.1
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC------CCCeEEEEe-eecC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC------DARVQTVSA-DVIN 98 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~------~~~~~~~~~-d~~~ 98 (186)
++.-..-....+++|+.|||--||||+++..+.-. |.+|+|.|++..|+..+.. .....++.. |+.+
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~------G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~ 257 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM------GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATN 257 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc------CceEeecchHHHHHhhhhhhhhhhCcCceeEEEeccccc
Confidence 34445555666899999999999999999998876 7899999999999876321 133445555 8887
Q ss_pred CChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 99 LPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 99 ~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
++.+ ++++|.|++|++.-... ........++...+++.+.. +||+||++++-
T Consensus 258 lpl~--------~~~vdaIatDPPYGrst--~~~~~~l~~Ly~~~le~~~e------------------vLk~gG~~vf~ 309 (347)
T COG1041 258 LPLR--------DNSVDAIATDPPYGRST--KIKGEGLDELYEEALESASE------------------VLKPGGRIVFA 309 (347)
T ss_pred CCCC--------CCccceEEecCCCCccc--ccccccHHHHHHHHHHHHHH------------------HhhcCcEEEEe
Confidence 7633 45799999998732221 12222345778888888888 99999999987
Q ss_pred Ec
Q 038391 179 LL 180 (186)
Q Consensus 179 ~~ 180 (186)
..
T Consensus 310 ~p 311 (347)
T COG1041 310 AP 311 (347)
T ss_pred cC
Confidence 65
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.4e-09 Score=81.81 Aligned_cols=73 Identities=16% Similarity=0.329 Sum_probs=57.9
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
+.++.+|||+|||+|.++..++++ +.+|+++|+++.++... ....+++++++|+.+.... +.
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~------~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~--------~~ 76 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLER------AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLP--------KL 76 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhc------CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCcc--------cc
Confidence 467789999999999999999997 37999999999886541 1235788999998876432 34
Q ss_pred CccEEEeCCCC
Q 038391 113 GFSVILSDMCP 123 (186)
Q Consensus 113 ~~D~V~~d~~~ 123 (186)
+||.|++|.+.
T Consensus 77 ~~d~vi~n~Py 87 (169)
T smart00650 77 QPYKVVGNLPY 87 (169)
T ss_pred CCCEEEECCCc
Confidence 69999998763
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.4e-09 Score=89.43 Aligned_cols=90 Identities=27% Similarity=0.414 Sum_probs=70.0
Q ss_pred chhhhhHHhHHHHHHHcC-------CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeE
Q 038391 18 GYVARSAFKLLQIQKQYK-------LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQ 90 (186)
Q Consensus 18 ~y~~r~~~~l~~~~~~~~-------~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~ 90 (186)
+-.+|+.+||.+....+. .+.+|.++||+||+||+||..+.++ +.+|++||..+-. ..-....++.
T Consensus 183 ~apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r------G~~V~AVD~g~l~-~~L~~~~~V~ 255 (357)
T PRK11760 183 DAPSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR------GMFVTAVDNGPMA-QSLMDTGQVE 255 (357)
T ss_pred CCCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc------CCEEEEEechhcC-HhhhCCCCEE
Confidence 356899999999977765 3578999999999999999999998 6799999966532 2234557788
Q ss_pred EEEeeecCCChhhHhhhCCCCCCccEEEeCCC
Q 038391 91 TVSADVINLPSNQVRALSPKQKGFSVILSDMC 122 (186)
Q Consensus 91 ~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~ 122 (186)
...+|...... ..+.+|+++|||.
T Consensus 256 h~~~d~fr~~p--------~~~~vDwvVcDmv 279 (357)
T PRK11760 256 HLRADGFKFRP--------PRKNVDWLVCDMV 279 (357)
T ss_pred EEeccCcccCC--------CCCCCCEEEEecc
Confidence 88887654432 1468999999984
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.3e-09 Score=86.35 Aligned_cols=78 Identities=21% Similarity=0.195 Sum_probs=59.5
Q ss_pred HHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhh
Q 038391 30 IQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQ 103 (186)
Q Consensus 30 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~ 103 (186)
...+...++++.+||++|||+|+.+..+++.. ++|+.+|+.+...+.+ ....++.++++|-+.-..
T Consensus 63 ~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~------~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~-- 134 (209)
T COG2518 63 RMLQLLELKPGDRVLEIGTGSGYQAAVLARLV------GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP-- 134 (209)
T ss_pred HHHHHhCCCCCCeEEEECCCchHHHHHHHHHh------CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC--
Confidence 33444447999999999999999999999984 6999999999875442 123469999999765321
Q ss_pred HhhhCCCCCCccEEEeCC
Q 038391 104 VRALSPKQKGFSVILSDM 121 (186)
Q Consensus 104 l~~~~~~~~~~D~V~~d~ 121 (186)
....||.|++..
T Consensus 135 ------~~aPyD~I~Vta 146 (209)
T COG2518 135 ------EEAPYDRIIVTA 146 (209)
T ss_pred ------CCCCcCEEEEee
Confidence 247999999854
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-09 Score=94.31 Aligned_cols=106 Identities=20% Similarity=0.129 Sum_probs=75.5
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-------------CCCCeEEEEeeecCCChhhH
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-------------CDARVQTVSADVINLPSNQV 104 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-------------~~~~~~~~~~d~~~~~~~~l 104 (186)
....+||++|||.|..+..+.+..+ ..+|++||+++++++.+. ..++++++.+|+......
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~----v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~-- 222 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYET----VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS-- 222 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCC----CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh--
Confidence 4457999999999998888887632 369999999999865321 356899999988753221
Q ss_pred hhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 105 RALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 105 ~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
..++||+|++|.+-+... . ...-....++..+.+ .|+|||++++.
T Consensus 223 -----~~~~YDVIIvDl~DP~~~-~-----~~~LyT~EFy~~~~~------------------~LkPgGV~V~Q 267 (374)
T PRK01581 223 -----PSSLYDVIIIDFPDPATE-L-----LSTLYTSELFARIAT------------------FLTEDGAFVCQ 267 (374)
T ss_pred -----cCCCccEEEEcCCCcccc-c-----hhhhhHHHHHHHHHH------------------hcCCCcEEEEe
Confidence 246899999996421111 0 111224577888887 99999999886
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-08 Score=82.94 Aligned_cols=95 Identities=26% Similarity=0.383 Sum_probs=76.8
Q ss_pred hchhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-cCCCCCeEEE-Ee
Q 038391 17 LGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-LHCDARVQTV-SA 94 (186)
Q Consensus 17 ~~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-~~~~~~~~~~-~~ 94 (186)
..|++|.++||...+..|....++..+||+|+.||++|..+.++ +..+|+|+|.....+.. -+.++++..+ ..
T Consensus 57 ~~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~-----gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~t 131 (245)
T COG1189 57 QPYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQR-----GAKHVYAVDVGYGQLHWKLRNDPRVIVLERT 131 (245)
T ss_pred cCccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHc-----CCcEEEEEEccCCccCHhHhcCCcEEEEecC
Confidence 45999999999999999998899999999999999999999998 34699999999988765 3445555554 56
Q ss_pred eecCCChhhHhhhCCCCCCccEEEeCCC
Q 038391 95 DVINLPSNQVRALSPKQKGFSVILSDMC 122 (186)
Q Consensus 95 d~~~~~~~~l~~~~~~~~~~D~V~~d~~ 122 (186)
|+..+....+ .+..|+++||.+
T Consensus 132 N~r~l~~~~~------~~~~d~~v~DvS 153 (245)
T COG1189 132 NVRYLTPEDF------TEKPDLIVIDVS 153 (245)
T ss_pred ChhhCCHHHc------ccCCCeEEEEee
Confidence 7777665443 347899999763
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.2e-10 Score=98.63 Aligned_cols=113 Identities=27% Similarity=0.362 Sum_probs=73.9
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----------------CCCCCeEEEEeeecCCChh
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----------------HCDARVQTVSADVINLPSN 102 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----------------~~~~~~~~~~~d~~~~~~~ 102 (186)
++.+|||||||.|+.+.-.... + -..++|+||+...|..+ .......|+.+|+...
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~----i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~--- 133 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-K----IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSE--- 133 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-----SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCS---
T ss_pred CCCeEEEecCCCchhHHHHHhc-C----CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccc---
Confidence 7889999999999988888775 1 36999999999886431 0113456667776643
Q ss_pred hHhhhCCC-CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 103 QVRALSPK-QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 103 ~l~~~~~~-~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
.+.....+ ..+||+|-|-.+ .|- ...+.+..+.++.++.. .|+|||+++.++..
T Consensus 134 ~l~~~~~~~~~~FDvVScQFa-----lHY--~Fese~~ar~~l~Nvs~------------------~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 134 SLREKLPPRSRKFDVVSCQFA-----LHY--AFESEEKARQFLKNVSS------------------LLKPGGYFIGTTPD 188 (331)
T ss_dssp HHHCTSSSTTS-EEEEEEES------GGG--GGSSHHHHHHHHHHHHH------------------TEEEEEEEEEEEE-
T ss_pred hhhhhccccCCCcceeehHHH-----HHH--hcCCHHHHHHHHHHHHH------------------hcCCCCEEEEEecC
Confidence 23333222 369999998543 222 12345567778888888 99999999999987
Q ss_pred CCC
Q 038391 182 SQD 184 (186)
Q Consensus 182 ~~~ 184 (186)
++.
T Consensus 189 ~~~ 191 (331)
T PF03291_consen 189 SDE 191 (331)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.2e-09 Score=83.79 Aligned_cols=101 Identities=24% Similarity=0.348 Sum_probs=70.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-----CC-CCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-----CD-ARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-----~~-~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
.+.+|||+|||+|.++..+++. +.+++++|+++.++.... .. .++++...|+.+.... ..+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~-------~~~ 111 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL------GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEK-------GAK 111 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcC-------CCC
Confidence 4779999999999999988875 467999999998865421 11 1467777766543221 136
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+||+|++... ..+..+ ....+..+.+ .|+|||.+++....
T Consensus 112 ~~D~i~~~~~----l~~~~~-------~~~~l~~~~~------------------~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 112 SFDVVTCMEV----LEHVPD-------PQAFIRACAQ------------------LLKPGGILFFSTIN 151 (224)
T ss_pred CccEEEehhH----HHhCCC-------HHHHHHHHHH------------------hcCCCcEEEEEecC
Confidence 8999998431 111111 3467777777 99999999987653
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.4e-09 Score=97.34 Aligned_cols=107 Identities=22% Similarity=0.198 Sum_probs=74.7
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-------------CCCCeEEEEeeecCCChhhH
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-------------CDARVQTVSADVINLPSNQV 104 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-------------~~~~~~~~~~d~~~~~~~~l 104 (186)
++.++|||+|||+|..+..++++ +. ..+|+++|+++++++.++ .+++++++.+|..+...
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~---v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~--- 368 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PD---VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLR--- 368 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CC---cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHH---
Confidence 55789999999999999999876 21 269999999999865421 23678888888764321
Q ss_pred hhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 105 RALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 105 ~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
. ..++||+|++|.+.+.... . ..-...++++.+.+ .|||||.++++.
T Consensus 369 -~---~~~~fDvIi~D~~~~~~~~--~----~~L~t~ef~~~~~~------------------~L~pgG~lv~~~ 415 (521)
T PRK03612 369 -K---LAEKFDVIIVDLPDPSNPA--L----GKLYSVEFYRLLKR------------------RLAPDGLLVVQS 415 (521)
T ss_pred -h---CCCCCCEEEEeCCCCCCcc--h----hccchHHHHHHHHH------------------hcCCCeEEEEec
Confidence 1 2468999999864221100 0 01113467777777 999999999874
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-09 Score=88.26 Aligned_cols=110 Identities=18% Similarity=0.263 Sum_probs=73.4
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC-CCCeEEEEeeecCCChhhHhhhCCCCCCccEEE
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC-DARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~-~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~ 118 (186)
..-|||||||+|.-+..+.+. +-..+|+|||+.|++.+.. .-.-.++..|+-. +++...+.||.+|
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~------Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~-------GlpfrpGtFDg~I 117 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDS------GHQWIGVDISPSMLEQAVERELEGDLILCDMGE-------GLPFRPGTFDGVI 117 (270)
T ss_pred CcEEEEeccCCCcchheeccC------CceEEeecCCHHHHHHHHHhhhhcCeeeeecCC-------CCCCCCCccceEE
Confidence 678999999999999888875 6789999999999876432 1113455666642 1222468999987
Q ss_pred eCCC----CCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 119 SDMC----PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 119 ~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
+=.+ |+. +.........+..++...+. +|++|++.|++.+...+
T Consensus 118 SISAvQWLcnA----~~s~~~P~~Rl~~FF~tLy~------------------~l~rg~raV~QfYpen~ 165 (270)
T KOG1541|consen 118 SISAVQWLCNA----DKSLHVPKKRLLRFFGTLYS------------------CLKRGARAVLQFYPENE 165 (270)
T ss_pred Eeeeeeeeccc----CccccChHHHHHHHhhhhhh------------------hhccCceeEEEecccch
Confidence 6211 111 11111122335567777777 99999999999886543
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-09 Score=89.68 Aligned_cols=144 Identities=19% Similarity=0.247 Sum_probs=85.9
Q ss_pred CChHHHHHHhhchhhhhHHhHHHHHHHcCCC-CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC--c
Q 038391 7 PDFFYREAQRLGYVARSAFKLLQIQKQYKLI-KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS--L 83 (186)
Q Consensus 7 ~~~~~~~~~~~~y~~r~~~~l~~~~~~~~~~-~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~--~ 83 (186)
-|-||...+...+..|.+. +.+.-..+..- +...+||++|||.|.....+.+-.++ ++-+|+++|.|+.++.. .
T Consensus 39 wD~fy~~~~~rFfkdR~wL-~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n--~~l~v~acDfsp~Ai~~vk~ 115 (264)
T KOG2361|consen 39 WDTFYKIHENRFFKDRNWL-LREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPN--NRLKVYACDFSPRAIELVKK 115 (264)
T ss_pred hhhhhhhccccccchhHHH-HHhhHHhhCccccChhhheeeccCCCcccchhhhcCCC--CCeEEEEcCCChHHHHHHHh
Confidence 3445555554445555543 11111111111 22238999999999999999998664 35799999999999754 1
Q ss_pred C---CCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCC
Q 038391 84 H---CDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNS 160 (186)
Q Consensus 84 ~---~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (186)
+ ...++.....|++... +..- ...+++|+|++ +....+ ...+....++.+..+
T Consensus 116 ~~~~~e~~~~afv~Dlt~~~---~~~~-~~~~svD~it~--------IFvLSA-i~pek~~~a~~nl~~----------- 171 (264)
T KOG2361|consen 116 SSGYDESRVEAFVWDLTSPS---LKEP-PEEGSVDIITL--------IFVLSA-IHPEKMQSVIKNLRT----------- 171 (264)
T ss_pred ccccchhhhcccceeccchh---ccCC-CCcCccceEEE--------EEEEec-cChHHHHHHHHHHHH-----------
Confidence 1 1123333334444332 1111 13579998866 222222 123346688888888
Q ss_pred CCCCCCcccccCcEEEEEEccCCC
Q 038391 161 DSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 161 ~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
+|||||.|++.-+..=|
T Consensus 172 -------llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 172 -------LLKPGGSLLFRDYGRYD 188 (264)
T ss_pred -------HhCCCcEEEEeecccch
Confidence 99999999998765433
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.3e-09 Score=72.18 Aligned_cols=97 Identities=34% Similarity=0.483 Sum_probs=69.3
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCCCCCcc
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPKQKGFS 115 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D 115 (186)
+|+|+|||+|..+..+++. . ..+++++|+++..+.. .....+++++..|+.+.... ...++|
T Consensus 1 ~ildig~G~G~~~~~~~~~-~----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~d 68 (107)
T cd02440 1 RVLDLGCGTGALALALASG-P----GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPE-------ADESFD 68 (107)
T ss_pred CeEEEcCCccHHHHHHhcC-C----CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccc-------cCCceE
Confidence 4899999999999999882 2 5799999999987542 22345678888887655321 246899
Q ss_pred EEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 116 VILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 116 ~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
+|+++...... .......+....+ .|+|||.+++.
T Consensus 69 ~i~~~~~~~~~----------~~~~~~~l~~~~~------------------~l~~~g~~~~~ 103 (107)
T cd02440 69 VIISDPPLHHL----------VEDLARFLEEARR------------------LLKPGGVLVLT 103 (107)
T ss_pred EEEEccceeeh----------hhHHHHHHHHHHH------------------HcCCCCEEEEE
Confidence 99997642211 2235566666666 89999999886
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-09 Score=89.33 Aligned_cols=115 Identities=16% Similarity=0.153 Sum_probs=76.3
Q ss_pred HhHHHHHHHcCCCCCCC-EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhh
Q 038391 25 FKLLQIQKQYKLIKPGS-SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ 103 (186)
Q Consensus 25 ~~l~~~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~ 103 (186)
..+...+.. ..++. .++|+|||+|.-++.++.++ .+|+|+|+|+.||..+....++++.+.-.+ .+...
T Consensus 21 tdw~~~ia~---~~~~h~~a~DvG~G~Gqa~~~iae~~------k~VIatD~s~~mL~~a~k~~~~~y~~t~~~-ms~~~ 90 (261)
T KOG3010|consen 21 TDWFKKIAS---RTEGHRLAWDVGTGNGQAARGIAEHY------KEVIATDVSEAMLKVAKKHPPVTYCHTPST-MSSDE 90 (261)
T ss_pred HHHHHHHHh---hCCCcceEEEeccCCCcchHHHHHhh------hhheeecCCHHHHHHhhcCCCcccccCCcc-ccccc
Confidence 344443333 33443 89999999998888888886 579999999999876554444444432111 11112
Q ss_pred HhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 104 VRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 104 l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
...+....+++|+|+|- ...|+.+ .+++..++.+ +||+.|-++..-
T Consensus 91 ~v~L~g~e~SVDlI~~A-----qa~HWFd-------le~fy~~~~r------------------vLRk~Gg~iavW 136 (261)
T KOG3010|consen 91 MVDLLGGEESVDLITAA-----QAVHWFD-------LERFYKEAYR------------------VLRKDGGLIAVW 136 (261)
T ss_pred cccccCCCcceeeehhh-----hhHHhhc-------hHHHHHHHHH------------------HcCCCCCEEEEE
Confidence 22333347899999994 4466666 7789999998 999888444433
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.8e-09 Score=86.56 Aligned_cols=125 Identities=29% Similarity=0.371 Sum_probs=87.9
Q ss_pred hchhhhhHH--hHHHHHHHc---CCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCC----CCcCCCC
Q 038391 17 LGYVARSAF--KLLQIQKQY---KLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKV----PSLHCDA 87 (186)
Q Consensus 17 ~~y~~r~~~--~l~~~~~~~---~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i----~~~~~~~ 87 (186)
..||.+.++ ||...+... ..+++|.+||-||+++|...+++++..++ .+.||+||+|+... ..+....
T Consensus 46 ~eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~---~G~VYaVEfs~r~~rdL~~la~~R~ 122 (229)
T PF01269_consen 46 VEYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGP---DGVVYAVEFSPRSMRDLLNLAKKRP 122 (229)
T ss_dssp EEEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTT---TSEEEEEESSHHHHHHHHHHHHHST
T ss_pred cceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCC---CCcEEEEEecchhHHHHHHHhccCC
Confidence 357666655 677655432 24689999999999999999999999986 69999999999663 3355567
Q ss_pred CeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCc
Q 038391 88 RVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSG 167 (186)
Q Consensus 88 ~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (186)
|+-.+-+|+..+... ..+ -+.+|+|++|.+ ..+ +.+.+..++..
T Consensus 123 NIiPIl~DAr~P~~Y--~~l---v~~VDvI~~DVa-------Qp~------Qa~I~~~Na~~------------------ 166 (229)
T PF01269_consen 123 NIIPILEDARHPEKY--RML---VEMVDVIFQDVA-------QPD------QARIAALNARH------------------ 166 (229)
T ss_dssp TEEEEES-TTSGGGG--TTT---S--EEEEEEE-S-------STT------HHHHHHHHHHH------------------
T ss_pred ceeeeeccCCChHHh--hcc---cccccEEEecCC-------ChH------HHHHHHHHHHh------------------
Confidence 888888999866432 222 358999999853 223 36778888877
Q ss_pred ccccCcEEEEEEc
Q 038391 168 VLKPGGHLVIKLL 180 (186)
Q Consensus 168 ~LkpgG~lvi~~~ 180 (186)
.||+||.++|.+-
T Consensus 167 fLk~gG~~~i~iK 179 (229)
T PF01269_consen 167 FLKPGGHLIISIK 179 (229)
T ss_dssp HEEEEEEEEEEEE
T ss_pred hccCCcEEEEEEe
Confidence 9999999998763
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-08 Score=90.86 Aligned_cols=86 Identities=21% Similarity=0.222 Sum_probs=61.2
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCC
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLP 100 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~ 100 (186)
+.+.......+.++.+|||+|||+|.++..+++. ..+|+|+|+|+.++..+ ....+++++++|+.+..
T Consensus 285 l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~------~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l 358 (443)
T PRK13168 285 MVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ------AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDF 358 (443)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh------CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhh
Confidence 4443333333567889999999999999999987 37999999999997641 12246899999886432
Q ss_pred hhhHhhhCCCCCCccEEEeCCC
Q 038391 101 SNQVRALSPKQKGFSVILSDMC 122 (186)
Q Consensus 101 ~~~l~~~~~~~~~~D~V~~d~~ 122 (186)
. .+...+++||+|++|++
T Consensus 359 ~----~~~~~~~~fD~Vi~dPP 376 (443)
T PRK13168 359 T----DQPWALGGFDKVLLDPP 376 (443)
T ss_pred h----hhhhhcCCCCEEEECcC
Confidence 1 11112457999999876
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.86 E-value=1e-08 Score=86.33 Aligned_cols=103 Identities=14% Similarity=0.209 Sum_probs=76.4
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
+.+.++|||+|+++|+.+..++..+++ +++|+++|.+++.... +....+++++.+|+.+. +..+..
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~---~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~----L~~l~~ 188 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPE---SGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAES----LKSMIQ 188 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHh
Confidence 356789999999999999999998875 5789999999987432 44556899999987653 222210
Q ss_pred --CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 110 --KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 110 --~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
..++||+|+.|+. . ......++.+.+ +|+|||.+++-
T Consensus 189 ~~~~~~FD~VFIDa~--------K------~~Y~~y~e~~l~------------------lL~~GGvIV~D 227 (278)
T PLN02476 189 NGEGSSYDFAFVDAD--------K------RMYQDYFELLLQ------------------LVRVGGVIVMD 227 (278)
T ss_pred cccCCCCCEEEECCC--------H------HHHHHHHHHHHH------------------hcCCCcEEEEe
Confidence 1358999999863 1 124456666677 99999999873
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.2e-09 Score=89.34 Aligned_cols=106 Identities=16% Similarity=0.186 Sum_probs=74.9
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----------CCCCCeEEEEeeecCCChhhHhhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----------HCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----------~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
+..++||++|||.|.....++++.+ ..+|+.+|+++.+++.+ ..+++++++.+|+..... ..
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~----v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~----~~ 161 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSS----VEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK----NA 161 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCC----CCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh----hc
Confidence 5578999999999999999988731 36899999999875431 134689999998754321 11
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
++++||+|++|...+... . ..-....+++.+.+ .|+|||.++++
T Consensus 162 --~~~~yDvIi~D~~dp~~~---~----~~L~t~ef~~~~~~------------------~L~pgGvlv~q 205 (308)
T PLN02366 162 --PEGTYDAIIVDSSDPVGP---A----QELFEKPFFESVAR------------------ALRPGGVVCTQ 205 (308)
T ss_pred --cCCCCCEEEEcCCCCCCc---h----hhhhHHHHHHHHHH------------------hcCCCcEEEEC
Confidence 246899999987432211 0 01124567777887 99999999874
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.7e-09 Score=84.22 Aligned_cols=115 Identities=25% Similarity=0.402 Sum_probs=78.4
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------------------CCCC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------------------HCDA 87 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------------------~~~~ 87 (186)
.|.+..... ..+++.+||+.|||.|.....++++ |.+|+|+|+|+..++.. ....
T Consensus 25 ~L~~~~~~l-~~~~~~rvLvPgCG~g~D~~~La~~------G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~ 97 (218)
T PF05724_consen 25 ALVEYLDSL-ALKPGGRVLVPGCGKGYDMLWLAEQ------GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAG 97 (218)
T ss_dssp HHHHHHHHH-TTSTSEEEEETTTTTSCHHHHHHHT------TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTS
T ss_pred HHHHHHHhc-CCCCCCeEEEeCCCChHHHHHHHHC------CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCC
Confidence 355555552 2567789999999999999999998 67999999999886431 1134
Q ss_pred CeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCc
Q 038391 88 RVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSG 167 (186)
Q Consensus 88 ~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (186)
++++.++|+.+++.. ..++||+|+--. ....+.. ++.....+.+.+
T Consensus 98 ~i~~~~gDfF~l~~~-------~~g~fD~iyDr~-----~l~Alpp----~~R~~Ya~~l~~------------------ 143 (218)
T PF05724_consen 98 RITIYCGDFFELPPE-------DVGKFDLIYDRT-----FLCALPP----EMRERYAQQLAS------------------ 143 (218)
T ss_dssp SEEEEES-TTTGGGS-------CHHSEEEEEECS-----STTTS-G----GGHHHHHHHHHH------------------
T ss_pred ceEEEEcccccCChh-------hcCCceEEEEec-----ccccCCH----HHHHHHHHHHHH------------------
Confidence 688999999887643 125899998632 2333322 235566666776
Q ss_pred ccccCcEEEEEEcc
Q 038391 168 VLKPGGHLVIKLLE 181 (186)
Q Consensus 168 ~LkpgG~lvi~~~~ 181 (186)
+|+|||.+++.++.
T Consensus 144 ll~p~g~~lLi~l~ 157 (218)
T PF05724_consen 144 LLKPGGRGLLITLE 157 (218)
T ss_dssp CEEEEEEEEEEEEE
T ss_pred HhCCCCcEEEEEEE
Confidence 99999995444443
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.81 E-value=6e-09 Score=82.76 Aligned_cols=73 Identities=26% Similarity=0.385 Sum_probs=54.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
++++.+|||+|||+|.++..+++.. +.+++|+|+++.++..+.. .+++++++|+...... + +.++||+
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~-----~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~----~--~~~sfD~ 78 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEK-----QVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEA----F--PDKSFDY 78 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhcc-----CCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccc----c--CCCCcCE
Confidence 4678899999999999999888763 4688999999998765322 2477888887542100 0 3578999
Q ss_pred EEeCC
Q 038391 117 ILSDM 121 (186)
Q Consensus 117 V~~d~ 121 (186)
|+++.
T Consensus 79 Vi~~~ 83 (194)
T TIGR02081 79 VILSQ 83 (194)
T ss_pred EEEhh
Confidence 99964
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-08 Score=86.73 Aligned_cols=71 Identities=18% Similarity=0.237 Sum_probs=55.1
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.+ ....+++++++|+...... ..+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~------~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~-------~~~ 239 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP------GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA-------QGE 239 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc------CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh-------cCC
Confidence 4689999999999999999986 47999999999997542 1224689999988653211 135
Q ss_pred CccEEEeCCC
Q 038391 113 GFSVILSDMC 122 (186)
Q Consensus 113 ~~D~V~~d~~ 122 (186)
+||+|++|++
T Consensus 240 ~~D~Vv~dPP 249 (315)
T PRK03522 240 VPDLVLVNPP 249 (315)
T ss_pred CCeEEEECCC
Confidence 7999999965
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.81 E-value=2e-08 Score=79.25 Aligned_cols=108 Identities=18% Similarity=0.134 Sum_probs=73.3
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCe---------EEEEeCCCCCCCC-------cCCCCCeE
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGS---------VVGIDVKKVKVPS-------LHCDARVQ 90 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~---------v~gvDis~~~i~~-------~~~~~~~~ 90 (186)
+..........+++..|||-.||+|.+.+..+..... .. ++|.|+++.++.. +.....+.
T Consensus 16 lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~----~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~ 91 (179)
T PF01170_consen 16 LAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGAN----IPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYID 91 (179)
T ss_dssp HHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT----TSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEE
T ss_pred HHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhC----cccccccccccEEecCCCHHHHHHHHHHHHhcccCCceE
Confidence 4444445555688999999999999999998877543 33 8999999999754 33445688
Q ss_pred EEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcC
Q 038391 91 TVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALG 149 (186)
Q Consensus 91 ~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (186)
+.+.|+.+++. ..+++|.|++|++ -|..........++...++..+.+
T Consensus 92 ~~~~D~~~l~~--------~~~~~d~IvtnPP---yG~r~~~~~~~~~ly~~~~~~~~~ 139 (179)
T PF01170_consen 92 FIQWDARELPL--------PDGSVDAIVTNPP---YGRRLGSKKDLEKLYRQFLRELKR 139 (179)
T ss_dssp EEE--GGGGGG--------TTSBSCEEEEE-----STTSHCHHHHHHHHHHHHHHHHHC
T ss_pred EEecchhhccc--------ccCCCCEEEECcc---hhhhccCHHHHHHHHHHHHHHHHH
Confidence 88999887752 2569999999986 344444444557777888999998
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.9e-08 Score=83.01 Aligned_cols=109 Identities=23% Similarity=0.292 Sum_probs=83.4
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVIN 98 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~ 98 (186)
|-+.++.....+.+|.+|+|.|.|+|.++.+++..+++ .++|+.+|+-+...+. .....++++..+|+.+
T Consensus 81 KD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~---~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~ 157 (256)
T COG2519 81 KDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGP---EGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVRE 157 (256)
T ss_pred CCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCC---CceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccc
Confidence 34445566666899999999999999999999998875 6999999999988543 2334458888888876
Q ss_pred CChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 99 LPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 99 ~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
... ...||.|+.|++- .-.+++.+.. .|||||.+++=
T Consensus 158 ~~~---------~~~vDav~LDmp~----------------PW~~le~~~~------------------~Lkpgg~~~~y 194 (256)
T COG2519 158 GID---------EEDVDAVFLDLPD----------------PWNVLEHVSD------------------ALKPGGVVVVY 194 (256)
T ss_pred ccc---------ccccCEEEEcCCC----------------hHHHHHHHHH------------------HhCCCcEEEEE
Confidence 543 3489999999852 1246666676 99999999875
Q ss_pred Ec
Q 038391 179 LL 180 (186)
Q Consensus 179 ~~ 180 (186)
.-
T Consensus 195 ~P 196 (256)
T COG2519 195 SP 196 (256)
T ss_pred cC
Confidence 43
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.8e-09 Score=86.49 Aligned_cols=105 Identities=19% Similarity=0.191 Sum_probs=71.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----------CCCCCeEEEEeeecCCChhhHhhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----------HCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----------~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
+...+||++|||+|..+..+++..+ ..+|+++|+++.+++.+ ....+++++.+|.... +..
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~----~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~----l~~- 141 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKS----VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKF----LAD- 141 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCC----cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHH----HHh-
Confidence 3456999999999999998887642 36899999999886431 1235677777665432 111
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
..++||+|++|.+.+...... -....+++.+.+ .|+|||.+++.
T Consensus 142 --~~~~yDvIi~D~~~~~~~~~~-------l~~~ef~~~~~~------------------~L~pgG~lv~~ 185 (270)
T TIGR00417 142 --TENTFDVIIVDSTDPVGPAET-------LFTKEFYELLKK------------------ALNEDGIFVAQ 185 (270)
T ss_pred --CCCCccEEEEeCCCCCCcccc-------hhHHHHHHHHHH------------------HhCCCcEEEEc
Confidence 146899999986422211111 013466677777 99999999986
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-08 Score=84.45 Aligned_cols=89 Identities=21% Similarity=0.312 Sum_probs=62.8
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVIN 98 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~ 98 (186)
+-+.++.....++||.+||+-|+|+|.+|..+++.+++ .++|+.+|+.+...+. .....++++.+.|+..
T Consensus 27 kD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p---~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~ 103 (247)
T PF08704_consen 27 KDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGP---TGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCE 103 (247)
T ss_dssp HHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTT---TSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGC
T ss_pred chHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCC---CeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceec
Confidence 44455566666899999999999999999999999876 6999999999988543 3455689999999865
Q ss_pred CChhhHhhhCCCCCCccEEEeCCC
Q 038391 99 LPSNQVRALSPKQKGFSVILSDMC 122 (186)
Q Consensus 99 ~~~~~l~~~~~~~~~~D~V~~d~~ 122 (186)
..+. .+ ....+|.|+.|++
T Consensus 104 ~g~~--~~---~~~~~DavfLDlp 122 (247)
T PF08704_consen 104 EGFD--EE---LESDFDAVFLDLP 122 (247)
T ss_dssp G--S--TT----TTSEEEEEEESS
T ss_pred cccc--cc---ccCcccEEEEeCC
Confidence 3321 00 1368999999986
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.2e-08 Score=87.30 Aligned_cols=65 Identities=18% Similarity=0.269 Sum_probs=49.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC-----------CCCeEEEEeeecCCChhhHhhh
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC-----------DARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~-----------~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|+..++. ..++.+...|+..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~------g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l-------- 209 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE------GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL-------- 209 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--------
Confidence 5789999999999999999986 5799999999999754211 12456666664321
Q ss_pred CCCCCCccEEEeC
Q 038391 108 SPKQKGFSVILSD 120 (186)
Q Consensus 108 ~~~~~~~D~V~~d 120 (186)
.++||+|+|.
T Consensus 210 ---~~~fD~Vv~~ 219 (315)
T PLN02585 210 ---SGKYDTVTCL 219 (315)
T ss_pred ---CCCcCEEEEc
Confidence 3689999983
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.6e-09 Score=84.31 Aligned_cols=105 Identities=18% Similarity=0.323 Sum_probs=74.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
....++||++||++|+-+..+++.+++ +++|+.+|+++..... +....+++++.+|+.+.-.....+.
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~---~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~-- 117 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPE---DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDG-- 117 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTT---TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTT--
T ss_pred hcCCceEEEeccccccHHHHHHHhhcc---cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhcc--
Confidence 345779999999999999999999875 6899999999987433 3445689999998865322111111
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
..++||+|+.|.. ... ....++.+.+ +|+|||.+++-
T Consensus 118 ~~~~fD~VFiDa~--------K~~------y~~y~~~~~~------------------ll~~ggvii~D 154 (205)
T PF01596_consen 118 EEGQFDFVFIDAD--------KRN------YLEYFEKALP------------------LLRPGGVIIAD 154 (205)
T ss_dssp TTTSEEEEEEEST--------GGG------HHHHHHHHHH------------------HEEEEEEEEEE
T ss_pred CCCceeEEEEccc--------ccc------hhhHHHHHhh------------------hccCCeEEEEc
Confidence 1358999999763 111 3345555666 99999999873
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.7e-08 Score=76.32 Aligned_cols=76 Identities=16% Similarity=0.086 Sum_probs=54.2
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
++.++||++||+|.++..++.+. ..+|++||+++..+.. .....+++++++|+... +..+....
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg-----a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~----l~~~~~~~ 119 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG-----AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA----LKFLAKKP 119 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC-----CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH----HHHhhccC
Confidence 58899999999999999999982 3589999999988543 22234678888887432 11121112
Q ss_pred CCccEEEeCCCC
Q 038391 112 KGFSVILSDMCP 123 (186)
Q Consensus 112 ~~~D~V~~d~~~ 123 (186)
..||+|+.|++.
T Consensus 120 ~~~dvv~~DPPy 131 (189)
T TIGR00095 120 TFDNVIYLDPPF 131 (189)
T ss_pred CCceEEEECcCC
Confidence 358999998764
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.8e-08 Score=78.81 Aligned_cols=66 Identities=20% Similarity=0.274 Sum_probs=50.6
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
.++.+|||+|||+|.++..+++. +.+|+|+|+++.++..+ ....++++..+|+.. .
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~------~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-----------~ 124 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR------GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES-----------L 124 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh-----------c
Confidence 56789999999999999999886 46799999999997542 112467888877321 2
Q ss_pred CCCccEEEeC
Q 038391 111 QKGFSVILSD 120 (186)
Q Consensus 111 ~~~~D~V~~d 120 (186)
.++||+|++.
T Consensus 125 ~~~fD~v~~~ 134 (230)
T PRK07580 125 LGRFDTVVCL 134 (230)
T ss_pred cCCcCEEEEc
Confidence 4689999984
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.9e-08 Score=80.50 Aligned_cols=107 Identities=23% Similarity=0.344 Sum_probs=73.5
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCCCCCcc
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPKQKGFS 115 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D 115 (186)
.+||||||.|.++..+|+..+ ...++|+|+....+.. .....|+.++++|+... +..+. +.+++|
T Consensus 20 l~lEIG~G~G~~l~~~A~~~P----d~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~----l~~~~-~~~~v~ 90 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNP----DINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDAREL----LRRLF-PPGSVD 90 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHST----TSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTH----HHHHS-TTTSEE
T ss_pred eEEEecCCCCHHHHHHHHHCC----CCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHH----Hhhcc-cCCchh
Confidence 899999999999999999975 5899999999988654 23457899999998653 33333 357999
Q ss_pred EEEeCCC-CCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 116 VILSDMC-PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 116 ~V~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
.|..+.+ |....-|...+.. ...++....+ .|+|||.+.+++
T Consensus 91 ~i~i~FPDPWpK~rH~krRl~----~~~fl~~~~~------------------~L~~gG~l~~~T 133 (195)
T PF02390_consen 91 RIYINFPDPWPKKRHHKRRLV----NPEFLELLAR------------------VLKPGGELYFAT 133 (195)
T ss_dssp EEEEES-----SGGGGGGSTT----SHHHHHHHHH------------------HEEEEEEEEEEE
T ss_pred eEEEeCCCCCcccchhhhhcC----CchHHHHHHH------------------HcCCCCEEEEEe
Confidence 9988765 2222222222111 3366667776 999999998875
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.5e-08 Score=85.04 Aligned_cols=72 Identities=13% Similarity=0.194 Sum_probs=54.4
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.+ ....+++++++|+.+.... ..
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~------~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~-------~~ 298 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGP------DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA-------QM 298 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhc------CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh-------cC
Confidence 35679999999999999999975 47899999999997541 1223788998887543211 12
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
.+||+|++|++
T Consensus 299 ~~~D~vi~DPP 309 (374)
T TIGR02085 299 SAPELVLVNPP 309 (374)
T ss_pred CCCCEEEECCC
Confidence 46999999976
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.4e-08 Score=80.91 Aligned_cols=73 Identities=18% Similarity=0.284 Sum_probs=58.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
+.++.+|||+|||+|.+|..+++. +.+|+++|+++.++... ....+++++++|+..... .
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~------~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~----------~ 90 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKR------AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDL----------P 90 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHh------CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCc----------h
Confidence 567899999999999999999998 36899999999996541 113579999999876542 2
Q ss_pred CccEEEeCCCCCC
Q 038391 113 GFSVILSDMCPSV 125 (186)
Q Consensus 113 ~~D~V~~d~~~~~ 125 (186)
.||.|++|.+...
T Consensus 91 ~~d~Vv~NlPy~i 103 (258)
T PRK14896 91 EFNKVVSNLPYQI 103 (258)
T ss_pred hceEEEEcCCccc
Confidence 5799999987443
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.5e-08 Score=77.50 Aligned_cols=114 Identities=25% Similarity=0.271 Sum_probs=85.3
Q ss_pred hHHHHHHHcC---CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCCCCeEEEEeeecC
Q 038391 26 KLLQIQKQYK---LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCDARVQTVSADVIN 98 (186)
Q Consensus 26 ~l~~~~~~~~---~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~~~~~~~~~d~~~ 98 (186)
||...+.... .+++|++||-||+.+|...+++++..++ +.+||||+|+..... +....|+--+.+|+..
T Consensus 60 KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~----G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~ 135 (231)
T COG1889 60 KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGE----GRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARK 135 (231)
T ss_pred HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCC----CcEEEEEecchhHHHHHHHHHhCCCceeeecccCC
Confidence 5665444322 3689999999999999999999999863 899999999988533 4556678888899886
Q ss_pred CChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 99 LPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 99 ~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
+.. ...+ -+.+|+|+.|.+ .++ +.+.+..++.. +||+||.++|.
T Consensus 136 P~~--Y~~~---Ve~VDviy~DVA-------Qp~------Qa~I~~~Na~~------------------FLk~~G~~~i~ 179 (231)
T COG1889 136 PEK--YRHL---VEKVDVIYQDVA-------QPN------QAEILADNAEF------------------FLKKGGYVVIA 179 (231)
T ss_pred cHH--hhhh---cccccEEEEecC-------Cch------HHHHHHHHHHH------------------hcccCCeEEEE
Confidence 643 2333 357999999753 232 36778888888 99999965554
Q ss_pred E
Q 038391 179 L 179 (186)
Q Consensus 179 ~ 179 (186)
+
T Consensus 180 i 180 (231)
T COG1889 180 I 180 (231)
T ss_pred E
Confidence 3
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.3e-08 Score=78.90 Aligned_cols=105 Identities=24% Similarity=0.394 Sum_probs=68.9
Q ss_pred CCC-CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeE-EEEeeecCCChhhHhhhCC
Q 038391 38 KPG-SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQ-TVSADVINLPSNQVRALSP 109 (186)
Q Consensus 38 ~~~-~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~-~~~~d~~~~~~~~l~~~~~ 109 (186)
+.+ ..||++|||||..-.+.-.. ++.+|+++|.++.|-+. .+...++. |+.++..+++. +
T Consensus 74 k~~K~~vLEvgcGtG~Nfkfy~~~-----p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~--l----- 141 (252)
T KOG4300|consen 74 KSGKGDVLEVGCGTGANFKFYPWK-----PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQ--L----- 141 (252)
T ss_pred ccCccceEEecccCCCCcccccCC-----CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcc--c-----
Confidence 444 36899999999765554433 36899999999999332 11223444 77887776641 1
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEE-EEEccCC
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV-IKLLESQ 183 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lv-i~~~~~~ 183 (186)
++.++|.|++-.. .-. .+-....+.+..+ +|||||+++ |.+..++
T Consensus 142 ~d~s~DtVV~Tlv-----LCS------ve~~~k~L~e~~r------------------lLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 142 ADGSYDTVVCTLV-----LCS------VEDPVKQLNEVRR------------------LLRPGGRIIFIEHVAGE 187 (252)
T ss_pred ccCCeeeEEEEEE-----Eec------cCCHHHHHHHHHH------------------hcCCCcEEEEEeccccc
Confidence 4789999988321 111 1225678888888 999999977 4444443
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.7e-08 Score=79.71 Aligned_cols=86 Identities=20% Similarity=0.224 Sum_probs=58.1
Q ss_pred HHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCCh
Q 038391 29 QIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPS 101 (186)
Q Consensus 29 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~ 101 (186)
+..+.....+ +..|||+|||+|.+++.++..+++ ++|+++|.|+.++.. .....++..++-++.+...
T Consensus 139 d~~~~~~~~~-~~~ildlgtGSGaIslsll~~L~~----~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~ 213 (328)
T KOG2904|consen 139 DALNNSEHSK-HTHILDLGTGSGAISLSLLHGLPQ----CTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDAS 213 (328)
T ss_pred HHHhhhhhcc-cceEEEecCCccHHHHHHHhcCCC----ceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccc
Confidence 3334433333 448999999999999999999874 899999999999654 2344566666443333211
Q ss_pred hhHhhhCCCCCCccEEEeCCC
Q 038391 102 NQVRALSPKQKGFSVILSDMC 122 (186)
Q Consensus 102 ~~l~~~~~~~~~~D~V~~d~~ 122 (186)
. +...+.+++|++++|++
T Consensus 214 ~---~~~l~~~~~dllvsNPP 231 (328)
T KOG2904|consen 214 D---EHPLLEGKIDLLVSNPP 231 (328)
T ss_pred c---ccccccCceeEEecCCC
Confidence 1 01113579999999975
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.2e-08 Score=85.20 Aligned_cols=86 Identities=20% Similarity=0.145 Sum_probs=61.4
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCC
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLP 100 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~ 100 (186)
+.+....+..++++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.+ ....+++++++|+.+..
T Consensus 280 l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~------~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l 353 (431)
T TIGR00479 280 LVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ------AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVL 353 (431)
T ss_pred HHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh------CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHH
Confidence 3443333333567789999999999999999987 36899999999997542 12357899999886421
Q ss_pred hhhHhhhCCCCCCccEEEeCCC
Q 038391 101 SNQVRALSPKQKGFSVILSDMC 122 (186)
Q Consensus 101 ~~~l~~~~~~~~~~D~V~~d~~ 122 (186)
..+...+.+||+|+.|++
T Consensus 354 ----~~~~~~~~~~D~vi~dPP 371 (431)
T TIGR00479 354 ----PKQPWAGQIPDVLLLDPP 371 (431)
T ss_pred ----HHHHhcCCCCCEEEECcC
Confidence 122112457999999876
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.2e-08 Score=84.65 Aligned_cols=110 Identities=25% Similarity=0.276 Sum_probs=77.9
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCC-------cCC-CCCeEEEEeeecCCChhhHhhhCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPS-------LHC-DARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~-------~~~-~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
|++|||+.|=||+++.+.+.. |+ +|++||+|...+.. +.. ..+..++++|+... +...-..
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g------GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~----l~~~~~~ 287 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG------GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKW----LRKAERR 287 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc------CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHH----HHHHHhc
Confidence 999999999999999999986 45 99999999998754 222 34678999998654 2223224
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
+.+||+|+.|+|.-..+-... ....+-....+..+.+ +|+|||++++..
T Consensus 288 g~~fDlIilDPPsF~r~k~~~--~~~~rdy~~l~~~~~~------------------iL~pgG~l~~~s 336 (393)
T COG1092 288 GEKFDLIILDPPSFARSKKQE--FSAQRDYKDLNDLALR------------------LLAPGGTLVTSS 336 (393)
T ss_pred CCcccEEEECCcccccCcccc--hhHHHHHHHHHHHHHH------------------HcCCCCEEEEEe
Confidence 569999999986222221111 2233344466666666 999999998764
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.3e-08 Score=81.14 Aligned_cols=74 Identities=15% Similarity=0.293 Sum_probs=57.8
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc---CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL---HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~---~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
.+.++.+|||+|||+|.++..++++ +.+|+|+|+++.|++.. ....+++++++|+...+... -
T Consensus 39 ~~~~~~~VLEiG~G~G~lt~~L~~~------~~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~--------~ 104 (272)
T PRK00274 39 GPQPGDNVLEIGPGLGALTEPLLER------AAKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSE--------L 104 (272)
T ss_pred CCCCcCeEEEeCCCccHHHHHHHHh------CCcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHH--------c
Confidence 3577889999999999999999998 35899999999997652 11258999999988765331 1
Q ss_pred CccEEEeCCCC
Q 038391 113 GFSVILSDMCP 123 (186)
Q Consensus 113 ~~D~V~~d~~~ 123 (186)
.++.|++|.+.
T Consensus 105 ~~~~vv~NlPY 115 (272)
T PRK00274 105 QPLKVVANLPY 115 (272)
T ss_pred CcceEEEeCCc
Confidence 15899998763
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.4e-09 Score=85.74 Aligned_cols=115 Identities=20% Similarity=0.236 Sum_probs=73.2
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCC-CCeEEEEeeecCCChhhH
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCD-ARVQTVSADVINLPSNQV 104 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~-~~~~~~~~d~~~~~~~~l 104 (186)
.|.+++..... .+-.++||+|||||..+..+-... .+++|||||+.|++++... ..-+..+++...+.
T Consensus 113 ~l~emI~~~~~-g~F~~~lDLGCGTGL~G~~lR~~a------~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl---- 181 (287)
T COG4976 113 LLAEMIGKADL-GPFRRMLDLGCGTGLTGEALRDMA------DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFL---- 181 (287)
T ss_pred HHHHHHHhccC-CccceeeecccCcCcccHhHHHHH------hhccCCchhHHHHHHHHhccchHHHHHHHHHHHh----
Confidence 45555555331 224799999999999999998874 6899999999999875432 22233344433221
Q ss_pred hhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 105 RALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 105 ~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
+.. .++.||+|.+-- - ..=+--.+..+..+.. .|+|||.|.++.=..
T Consensus 182 ~~~--~~er~DLi~AaD-----V------l~YlG~Le~~~~~aa~------------------~L~~gGlfaFSvE~l 228 (287)
T COG4976 182 EDL--TQERFDLIVAAD-----V------LPYLGALEGLFAGAAG------------------LLAPGGLFAFSVETL 228 (287)
T ss_pred hhc--cCCcccchhhhh-----H------HHhhcchhhHHHHHHH------------------hcCCCceEEEEeccc
Confidence 111 367999997621 0 0001114466666676 999999999876443
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.4e-08 Score=81.10 Aligned_cols=40 Identities=25% Similarity=0.590 Sum_probs=35.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.+..+||+||-+|..|..+++.+++ ..|+|+||.+..|..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~----r~iLGvDID~~LI~~ 97 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGP----RRILGVDIDPVLIQR 97 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhcc----ceeeEeeccHHHHHH
Confidence 3678999999999999999999975 689999999987543
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.5e-08 Score=78.49 Aligned_cols=101 Identities=18% Similarity=0.195 Sum_probs=75.3
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCCcC--------CCCCeEEEEeeecCCChhhHhhhC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPSLH--------CDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~~~--------~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
+.|++|||-|.|-|+.++..+++ |+ +|+.||.++.-+..+. ....+.++.+|+.++- +.+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~r------GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V----~~~- 201 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALER------GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVV----KDF- 201 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHc------CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHH----hcC-
Confidence 56999999999999999999998 45 9999999998865522 1235788889876542 222
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEE
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV 176 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lv 176 (186)
.+.+||.|+-|++.-.... .--.+++..+..+ +|||||.|+
T Consensus 202 -~D~sfDaIiHDPPRfS~Ag--------eLYseefY~El~R------------------iLkrgGrlF 242 (287)
T COG2521 202 -DDESFDAIIHDPPRFSLAG--------ELYSEEFYRELYR------------------ILKRGGRLF 242 (287)
T ss_pred -CccccceEeeCCCccchhh--------hHhHHHHHHHHHH------------------HcCcCCcEE
Confidence 4789999999875211111 1125678888888 999999987
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.2e-08 Score=82.06 Aligned_cols=101 Identities=17% Similarity=0.239 Sum_probs=69.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC------CCCcCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK------VPSLHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~------i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
+=+++.|||+|||+|.++.+.++. |..+|++||.|.-+ +..+.....++++++.+.+... |
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akA-----GA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~L--------P 124 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKA-----GARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIEL--------P 124 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHh-----CcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEec--------C
Confidence 446889999999999888888887 24699999999865 2234555668888887765522 3
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV 176 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lv 176 (186)
-.++|+|++.. .|.+.. -..++...+..--+ .|+|||.++
T Consensus 125 ~eKVDiIvSEW----MGy~Ll----~EsMldsVl~ARdk------------------wL~~~G~i~ 164 (346)
T KOG1499|consen 125 VEKVDIIVSEW----MGYFLL----YESMLDSVLYARDK------------------WLKEGGLIY 164 (346)
T ss_pred ccceeEEeehh----hhHHHH----Hhhhhhhhhhhhhh------------------ccCCCceEc
Confidence 47999999942 222222 22334444444444 999999875
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=9e-08 Score=81.27 Aligned_cols=75 Identities=21% Similarity=0.347 Sum_probs=59.5
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
.+.++.+|||+|||+|.+|..+++. +.+|+++|+++.++... ....+++++++|+....
T Consensus 33 ~~~~~~~VLEIG~G~G~LT~~Ll~~------~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~-------- 98 (294)
T PTZ00338 33 AIKPTDTVLEIGPGTGNLTEKLLQL------AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE-------- 98 (294)
T ss_pred CCCCcCEEEEecCchHHHHHHHHHh------CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc--------
Confidence 3678899999999999999999987 46899999999996541 12467999999987643
Q ss_pred CCCCCccEEEeCCCCCCC
Q 038391 109 PKQKGFSVILSDMCPSVS 126 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~ 126 (186)
-..||+|++|.+..++
T Consensus 99 --~~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 99 --FPYFDVCVANVPYQIS 114 (294)
T ss_pred --ccccCEEEecCCcccC
Confidence 1368999999875443
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1e-07 Score=77.58 Aligned_cols=100 Identities=21% Similarity=0.322 Sum_probs=75.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEE-eeecCCChhhHhhhC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVS-ADVINLPSNQVRALS 108 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~-~d~~~~~~~~l~~~~ 108 (186)
++..++||++|++.|+-+..++..++. .++++.+|+++++... +....++..+. +|..+. +..+
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~---~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~----l~~~- 128 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPD---DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV----LSRL- 128 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCC---CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH----HHhc-
Confidence 457889999999999999999999874 4799999999999543 44556677777 465432 2221
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
..++||+|+.|.. + ......++.+.. +|+|||.+|+
T Consensus 129 -~~~~fDliFIDad--------K------~~yp~~le~~~~------------------lLr~GGliv~ 164 (219)
T COG4122 129 -LDGSFDLVFIDAD--------K------ADYPEYLERALP------------------LLRPGGLIVA 164 (219)
T ss_pred -cCCCccEEEEeCC--------h------hhCHHHHHHHHH------------------HhCCCcEEEE
Confidence 3579999999763 1 113467777887 9999999986
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-07 Score=78.54 Aligned_cols=101 Identities=13% Similarity=0.219 Sum_probs=74.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCC-
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSP- 109 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~- 109 (186)
.+..+||++|+++|+-+..++..+++ +++|+.+|+++..... +....+++++.+++.+. +..+..
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~---~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~----L~~l~~~ 150 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPE---DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV----LDQMIED 150 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCC---CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHH----HHHHHhc
Confidence 45679999999999999999998865 6899999999977432 45567899999987653 222211
Q ss_pred --CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 110 --KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 110 --~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
..++||+|+.|.. . ......++.+.+ +|+|||.+++
T Consensus 151 ~~~~~~fD~iFiDad--------K------~~Y~~y~~~~l~------------------ll~~GGviv~ 188 (247)
T PLN02589 151 GKYHGTFDFIFVDAD--------K------DNYINYHKRLID------------------LVKVGGVIGY 188 (247)
T ss_pred cccCCcccEEEecCC--------H------HHhHHHHHHHHH------------------hcCCCeEEEE
Confidence 1268999999763 1 113345555666 9999999886
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2e-07 Score=70.44 Aligned_cols=100 Identities=20% Similarity=0.135 Sum_probs=72.4
Q ss_pred CCCCEEEEEcccCCh-HHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 38 KPGSSVLDLGCAPGA-WLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~-~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
.++.+|||+|||+|. .+..+++. +..|+++|+++..++.+... .+.++.+|+.+..... -..+|+
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~------G~~ViaIDi~~~aV~~a~~~-~~~~v~dDlf~p~~~~-------y~~a~l 80 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKES------GFDVIVIDINEKAVEKAKKL-GLNAFVDDLFNPNLEI-------YKNAKL 80 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHC------CCEEEEEECCHHHHHHHHHh-CCeEEECcCCCCCHHH-------HhcCCE
Confidence 346799999999996 77777764 67999999999987653322 4688899998876542 468999
Q ss_pred EEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCCC
Q 038391 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDA 185 (186)
Q Consensus 117 V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~ 185 (186)
|.+--+ ..++....++.+.+ -|.-++|+.|.+|+.
T Consensus 81 iysirp-------------p~el~~~~~~la~~---------------------~~~~~~i~~l~~e~~ 115 (134)
T PRK04148 81 IYSIRP-------------PRDLQPFILELAKK---------------------INVPLIIKPLSGEEP 115 (134)
T ss_pred EEEeCC-------------CHHHHHHHHHHHHH---------------------cCCCEEEEcCCCCCC
Confidence 988211 12445556666653 378899999998863
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1e-07 Score=78.13 Aligned_cols=108 Identities=19% Similarity=0.232 Sum_probs=76.8
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCC-CeEEEEeeecCCChhhHhhhCCCCCCc
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDA-RVQTVSADVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~-~~~~~~~d~~~~~~~~l~~~~~~~~~~ 114 (186)
..+||||||.|.++..+|+..++ ..++|||+...-+.. ....- |+.+++.|+..+.. .+ .++++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~----~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~----~~-~~~~sl 120 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPE----KNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLD----YL-IPDGSL 120 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCC----CCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHH----hc-CCCCCe
Confidence 58999999999999999999764 899999999987544 12223 88899998865432 22 245699
Q ss_pred cEEEeCCC-CCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 115 SVILSDMC-PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 115 D~V~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
|.|..+.+ |+...-|...+.. ...+++...+ .|+|||.|.+++
T Consensus 121 ~~I~i~FPDPWpKkRH~KRRl~----~~~fl~~~a~------------------~Lk~gG~l~~aT 164 (227)
T COG0220 121 DKIYINFPDPWPKKRHHKRRLT----QPEFLKLYAR------------------KLKPGGVLHFAT 164 (227)
T ss_pred eEEEEECCCCCCCccccccccC----CHHHHHHHHH------------------HccCCCEEEEEe
Confidence 99988764 3333333222211 3366777776 999999999875
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.7e-07 Score=79.77 Aligned_cols=126 Identities=26% Similarity=0.311 Sum_probs=78.9
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhC-C
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALS-P 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~-~ 109 (186)
++||.+|||+|++||+.|..+.+.....-..+.|++-|+++.++.. .....++.....|+...+...+..+. .
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~ 232 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDK 232 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchh
Confidence 5899999999999999998888876431013589999999987422 23334444444454433321111111 0
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHH------------HHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSV------------ELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
....||-|+||.+|+..|....+...-. .+....+..+.+ +||+||+||-
T Consensus 233 ~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~------------------lLk~GG~lVY 294 (375)
T KOG2198|consen 233 EQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLR------------------LLKVGGRLVY 294 (375)
T ss_pred hhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHH------------------HhcCCCEEEE
Confidence 2358999999999987766433221111 122344455555 9999999997
Q ss_pred EEc
Q 038391 178 KLL 180 (186)
Q Consensus 178 ~~~ 180 (186)
++=
T Consensus 295 STC 297 (375)
T KOG2198|consen 295 STC 297 (375)
T ss_pred ecc
Confidence 653
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.5e-07 Score=78.56 Aligned_cols=80 Identities=18% Similarity=0.171 Sum_probs=54.1
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------c-CCCCCeEEEE-eeecCCChhhHhhhCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------L-HCDARVQTVS-ADVINLPSNQVRALSP 109 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~-~~~~~~~~~~-~d~~~~~~~~l~~~~~ 109 (186)
++.++||||||+|.+...++.+.. +.+++|+|+++.++.. + ....++++.+ .+..+.. .....
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~----~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~----~~i~~ 185 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY----GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIF----KGIIH 185 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC----CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhh----hcccc
Confidence 457999999999999888887753 4799999999988654 2 2344666653 2222211 11111
Q ss_pred CCCCccEEEeCCCCCCC
Q 038391 110 KQKGFSVILSDMCPSVS 126 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~ 126 (186)
+.+.||+|+||+++...
T Consensus 186 ~~~~fDlivcNPPf~~s 202 (321)
T PRK11727 186 KNERFDATLCNPPFHAS 202 (321)
T ss_pred cCCceEEEEeCCCCcCc
Confidence 35689999999875443
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.53 E-value=4e-07 Score=73.46 Aligned_cols=103 Identities=21% Similarity=0.252 Sum_probs=61.6
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHh
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVR 105 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~ 105 (186)
.+..++......++...|.|+|||-+.++..+.. +.+|+.+|+-... -.+...|+.+++.+
T Consensus 59 Pvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~-------~~~V~SfDLva~n---------~~Vtacdia~vPL~--- 119 (219)
T PF05148_consen 59 PVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN-------KHKVHSFDLVAPN---------PRVTACDIANVPLE--- 119 (219)
T ss_dssp HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S----------EEEEESS-SS---------TTEEES-TTS-S-----
T ss_pred cHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc-------CceEEEeeccCCC---------CCEEEecCccCcCC---
Confidence 3444555555556678999999999988854432 3689999987754 23556888877653
Q ss_pred hhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 106 ALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 106 ~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
++++|++++-.+ ..|.- ....+.++.| +|||||.|.|.-..+
T Consensus 120 -----~~svDv~VfcLS--LMGTn----------~~~fi~EA~R------------------vLK~~G~L~IAEV~S 161 (219)
T PF05148_consen 120 -----DESVDVAVFCLS--LMGTN----------WPDFIREANR------------------VLKPGGILKIAEVKS 161 (219)
T ss_dssp -----TT-EEEEEEES-----SS-----------HHHHHHHHHH------------------HEEEEEEEEEEEEGG
T ss_pred -----CCceeEEEEEhh--hhCCC----------cHHHHHHHHh------------------eeccCcEEEEEEecc
Confidence 689999987321 22222 4478999998 999999999976543
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.5e-07 Score=74.74 Aligned_cols=68 Identities=25% Similarity=0.347 Sum_probs=54.7
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
.|..|+|+|||||.++...+-. + ..+|+|||+++++++.. ....++.|+..|++.. ...
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~l-G----a~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~-----------~~~ 108 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALL-G----ASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF-----------RGK 108 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhc-C----CcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc-----------CCc
Confidence 5778999999999998887775 2 36999999999997541 2445799999998765 357
Q ss_pred ccEEEeCCC
Q 038391 114 FSVILSDMC 122 (186)
Q Consensus 114 ~D~V~~d~~ 122 (186)
+|.++.|++
T Consensus 109 ~dtvimNPP 117 (198)
T COG2263 109 FDTVIMNPP 117 (198)
T ss_pred cceEEECCC
Confidence 899998876
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.6e-07 Score=78.52 Aligned_cols=86 Identities=21% Similarity=0.258 Sum_probs=63.5
Q ss_pred HHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC--C--CCCeEEEEeeecCCChhh
Q 038391 28 LQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH--C--DARVQTVSADVINLPSNQ 103 (186)
Q Consensus 28 ~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~--~--~~~~~~~~~d~~~~~~~~ 103 (186)
.+++..+. ++++..+||.+||.|+.+..+++.+++ .++|+|+|.++.++..+. . ..+++++++|+.++...
T Consensus 9 ~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~---~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~- 83 (296)
T PRK00050 9 DEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGP---KGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEV- 83 (296)
T ss_pred HHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCC---CCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHH-
Confidence 34555544 577889999999999999999999854 589999999999975521 1 35899999998875321
Q ss_pred HhhhCCCCCCccEEEeCC
Q 038391 104 VRALSPKQKGFSVILSDM 121 (186)
Q Consensus 104 l~~~~~~~~~~D~V~~d~ 121 (186)
+.. .-.++|.|+.|.
T Consensus 84 l~~---~~~~vDgIl~DL 98 (296)
T PRK00050 84 LAE---GLGKVDGILLDL 98 (296)
T ss_pred HHc---CCCccCEEEECC
Confidence 111 012799999975
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.7e-07 Score=73.21 Aligned_cols=110 Identities=20% Similarity=0.235 Sum_probs=66.3
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
-+|.++||+.||+|.++...+.+ |..+|+.||.++..+.. .....++..+..|+... +..+...
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSR-----GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~----l~~~~~~ 111 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSR-----GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKF----LLKLAKK 111 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHT-----T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHH----HHHHHHC
T ss_pred cCCCeEEEcCCccCccHHHHHhc-----CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHH----HHhhccc
Confidence 36889999999999999999988 34699999999987432 12233577788875432 2222113
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
+.+||+|+.|+|...... .......+.. .. +|+++|.+++.+-..+
T Consensus 112 ~~~fDiIflDPPY~~~~~--------~~~~l~~l~~-~~------------------~l~~~~~ii~E~~~~~ 157 (183)
T PF03602_consen 112 GEKFDIIFLDPPYAKGLY--------YEELLELLAE-NN------------------LLNEDGLIIIEHSKKE 157 (183)
T ss_dssp TS-EEEEEE--STTSCHH--------HHHHHHHHHH-TT------------------SEEEEEEEEEEEETTS
T ss_pred CCCceEEEECCCcccchH--------HHHHHHHHHH-CC------------------CCCCCEEEEEEecCCC
Confidence 579999999986322110 0112222222 23 8999999999885543
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.8e-07 Score=74.86 Aligned_cols=70 Identities=19% Similarity=0.309 Sum_probs=55.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
+.++.+|||+|||+|.++..+++.. .+|+++|+++.++... ....+++++++|+...+..
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L~~~~------~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~---------- 90 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPLLKRA------KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP---------- 90 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHHhC------CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh----------
Confidence 5678899999999999999999983 5799999999996542 1246788999998776532
Q ss_pred Ccc---EEEeCCC
Q 038391 113 GFS---VILSDMC 122 (186)
Q Consensus 113 ~~D---~V~~d~~ 122 (186)
++| +|++|.+
T Consensus 91 ~~d~~~~vvsNlP 103 (253)
T TIGR00755 91 DFPKQLKVVSNLP 103 (253)
T ss_pred HcCCcceEEEcCC
Confidence 344 8888875
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-07 Score=79.25 Aligned_cols=108 Identities=23% Similarity=0.236 Sum_probs=69.3
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCC-CCCeEEEEeeecCCChhhHhhhCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHC-DARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~-~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.+|++|||+.|=+|+++.+.+.. |..+|++||.|...++. +.. ..++++++.|+.+.- ..+.
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-----GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l----~~~~- 191 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-----GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFL----KRLK- 191 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-----TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHH----HHHH-
T ss_pred cCCCceEEecCCCCHHHHHHHHC-----CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHH----HHHh-
Confidence 35889999999999999988764 13489999999998754 222 357899999986532 1111
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
..++||+||+|+|.-..+.+.. ..-....+..+.+ +|+|||.|++.
T Consensus 192 ~~~~fD~IIlDPPsF~k~~~~~-----~~~y~~L~~~a~~------------------ll~~gG~l~~~ 237 (286)
T PF10672_consen 192 KGGRFDLIILDPPSFAKSKFDL-----ERDYKKLLRRAMK------------------LLKPGGLLLTC 237 (286)
T ss_dssp HTT-EEEEEE--SSEESSTCEH-----HHHHHHHHHHHHH------------------TEEEEEEEEEE
T ss_pred cCCCCCEEEECCCCCCCCHHHH-----HHHHHHHHHHHHH------------------hcCCCCEEEEE
Confidence 2468999999987443333222 2233355556666 99999998754
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.4e-06 Score=71.30 Aligned_cols=103 Identities=20% Similarity=0.208 Sum_probs=72.8
Q ss_pred CCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCc
Q 038391 35 KLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~ 114 (186)
..+.+..+|+|+|+|.|.++..+++.++ +.+++.+|. |..++......+++++.+|+.+ +. .. +
T Consensus 96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~P----~l~~~v~Dl-p~v~~~~~~~~rv~~~~gd~f~-~~---------P~-~ 159 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGHFAIALARAYP----NLRATVFDL-PEVIEQAKEADRVEFVPGDFFD-PL---------PV-A 159 (241)
T ss_dssp STTTTSSEEEEET-TTSHHHHHHHHHST----TSEEEEEE--HHHHCCHHHTTTEEEEES-TTT-CC---------SS-E
T ss_pred ccccCccEEEeccCcchHHHHHHHHHCC----CCcceeecc-HhhhhccccccccccccccHHh-hh---------cc-c
Confidence 3356678999999999999999999986 589999998 5556654447899999999973 21 23 9
Q ss_pred cEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccC--cEEEEEEc
Q 038391 115 SVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPG--GHLVIKLL 180 (186)
Q Consensus 115 D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lkpg--G~lvi~~~ 180 (186)
|+++.. .-.|... .+.....++.+.+ .|+|| |+|+|.-.
T Consensus 160 D~~~l~-----~vLh~~~----d~~~~~iL~~~~~------------------al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 160 DVYLLR-----HVLHDWS----DEDCVKILRNAAA------------------ALKPGKDGRLLIIEM 200 (241)
T ss_dssp SEEEEE-----SSGGGS-----HHHHHHHHHHHHH------------------HSEECTTEEEEEEEE
T ss_pred cceeee-----hhhhhcc----hHHHHHHHHHHHH------------------HhCCCCCCeEEEEee
Confidence 999872 2234333 2445566666666 89999 99887643
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.5e-07 Score=84.24 Aligned_cols=101 Identities=23% Similarity=0.302 Sum_probs=65.7
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCC-------CCcCCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKV-------PSLHCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i-------~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
+..|+|+|||+|-+....++.....+...+|++||.++.++ .......+++++++|+.+... ..
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l---------pe 257 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL---------PE 257 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH---------SS
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC---------CC
Confidence 57899999999998877765521000136999999998763 224456789999999988763 35
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEE
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV 176 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lv 176 (186)
++|+|++-. -|. ..+. ++..+.+..+.+ .|||+|+++
T Consensus 258 kvDIIVSEl----LGs-fg~n----El~pE~Lda~~r------------------fLkp~Gi~I 294 (448)
T PF05185_consen 258 KVDIIVSEL----LGS-FGDN----ELSPECLDAADR------------------FLKPDGIMI 294 (448)
T ss_dssp -EEEEEE-------BT-TBTT----TSHHHHHHHGGG------------------GEEEEEEEE
T ss_pred ceeEEEEec----cCC-cccc----ccCHHHHHHHHh------------------hcCCCCEEe
Confidence 999999953 121 1122 224455676777 999999986
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.9e-07 Score=70.10 Aligned_cols=76 Identities=21% Similarity=0.284 Sum_probs=56.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.|.++||+.+|+|.++...+.+ +..+++.||.+...... .....+..++..|+.. .+.... ..
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSR-----GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~----~L~~~~-~~ 112 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSR-----GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALR----ALKQLG-TR 112 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhC-----CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHH----HHHhcC-CC
Confidence 5889999999999999999998 34699999999987432 2345678888888762 222222 12
Q ss_pred CCccEEEeCCCCC
Q 038391 112 KGFSVILSDMCPS 124 (186)
Q Consensus 112 ~~~D~V~~d~~~~ 124 (186)
++||+|+.|+|+.
T Consensus 113 ~~FDlVflDPPy~ 125 (187)
T COG0742 113 EPFDLVFLDPPYA 125 (187)
T ss_pred CcccEEEeCCCCc
Confidence 3599999998744
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.1e-07 Score=73.33 Aligned_cols=75 Identities=24% Similarity=0.314 Sum_probs=57.5
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----------------cCCCCCeEEEEeeecCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----------------LHCDARVQTVSADVINLP 100 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----------------~~~~~~~~~~~~d~~~~~ 100 (186)
++||.+.||+|.|+|+++..++..++. ++..++|||.-++.++. .....++.++.+|+....
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~--~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~ 157 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGA--TGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY 157 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcC--CCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC
Confidence 689999999999999999999988765 35566999988877432 112357888889887654
Q ss_pred hhhHhhhCCCCCCccEEEeCC
Q 038391 101 SNQVRALSPKQKGFSVILSDM 121 (186)
Q Consensus 101 ~~~l~~~~~~~~~~D~V~~d~ 121 (186)
. +..+||-|.+.+
T Consensus 158 ~--------e~a~YDaIhvGA 170 (237)
T KOG1661|consen 158 A--------EQAPYDAIHVGA 170 (237)
T ss_pred C--------ccCCcceEEEcc
Confidence 3 257999999943
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.6e-07 Score=73.54 Aligned_cols=80 Identities=18% Similarity=0.289 Sum_probs=52.7
Q ss_pred HHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChh
Q 038391 30 IQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSN 102 (186)
Q Consensus 30 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~ 102 (186)
.......+++++.|+|+.||.|.++..+++..+ +..|+++|++|..+.. ++...++..+++|+.....
T Consensus 92 r~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~----~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~- 166 (200)
T PF02475_consen 92 RRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGK----AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP- 166 (200)
T ss_dssp HHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-----SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----
T ss_pred HHHHHhcCCcceEEEEccCCccHHHHHHhhhcC----ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-
Confidence 334445578999999999999999999998532 4689999999987432 5566778899999887642
Q ss_pred hHhhhCCCCCCccEEEeCCC
Q 038391 103 QVRALSPKQKGFSVILSDMC 122 (186)
Q Consensus 103 ~l~~~~~~~~~~D~V~~d~~ 122 (186)
...||.|+.+.+
T Consensus 167 --------~~~~drvim~lp 178 (200)
T PF02475_consen 167 --------EGKFDRVIMNLP 178 (200)
T ss_dssp --------TT-EEEEEE--T
T ss_pred --------ccccCEEEECCh
Confidence 468999999764
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.9e-07 Score=76.36 Aligned_cols=69 Identities=20% Similarity=0.333 Sum_probs=54.7
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC------CCCcCCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK------VPSLHCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~------i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
.++.|||+|||+|.++.+.++. |..+|++||.|.-. ++.+....+++++.+.+.+... .+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA-----GA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL---------PE 242 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA-----GAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIEL---------PE 242 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh-----CcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccC---------ch
Confidence 4779999999999888887776 34699999998744 4556777899999998876542 46
Q ss_pred CccEEEeCC
Q 038391 113 GFSVILSDM 121 (186)
Q Consensus 113 ~~D~V~~d~ 121 (186)
+.|+||+.+
T Consensus 243 k~DviISEP 251 (517)
T KOG1500|consen 243 KVDVIISEP 251 (517)
T ss_pred hccEEEecc
Confidence 899999954
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.2e-07 Score=73.40 Aligned_cols=126 Identities=25% Similarity=0.309 Sum_probs=89.7
Q ss_pred hchhhhhHH--hHHHHHHH---cCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC----CCCcCCCC
Q 038391 17 LGYVARSAF--KLLQIQKQ---YKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK----VPSLHCDA 87 (186)
Q Consensus 17 ~~y~~r~~~--~l~~~~~~---~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~----i~~~~~~~ 87 (186)
..|+.+.+| ||..-+.- ..+++||.+||-||+++|..-+++++.+++ .+-||+||+|+.. +.-++...
T Consensus 129 vEyRVWnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGp---eG~VYAVEfs~rsGRdL~nmAkkRt 205 (317)
T KOG1596|consen 129 VEYRVWNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGP---EGCVYAVEFSHRSGRDLINMAKKRT 205 (317)
T ss_pred EEEEEeChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCC---CceEEEEEecccchHHHHHHhhccC
Confidence 347777766 66653322 224799999999999999999999999986 6899999999976 22244556
Q ss_pred CeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCc
Q 038391 88 RVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSG 167 (186)
Q Consensus 88 ~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (186)
|+..+..|+..+.... + .-.-+|+|++|.++ + .+...+..++..
T Consensus 206 NiiPIiEDArhP~KYR---m--lVgmVDvIFaDvaq-------p------dq~RivaLNA~~------------------ 249 (317)
T KOG1596|consen 206 NIIPIIEDARHPAKYR---M--LVGMVDVIFADVAQ-------P------DQARIVALNAQY------------------ 249 (317)
T ss_pred CceeeeccCCCchhee---e--eeeeEEEEeccCCC-------c------hhhhhhhhhhhh------------------
Confidence 7777778887665321 1 12468999998642 1 124455556666
Q ss_pred ccccCcEEEEEEcc
Q 038391 168 VLKPGGHLVIKLLE 181 (186)
Q Consensus 168 ~LkpgG~lvi~~~~ 181 (186)
+||+||.++|.+-.
T Consensus 250 FLk~gGhfvisika 263 (317)
T KOG1596|consen 250 FLKNGGHFVISIKA 263 (317)
T ss_pred hhccCCeEEEEEec
Confidence 99999999998754
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.1e-06 Score=78.23 Aligned_cols=86 Identities=19% Similarity=0.218 Sum_probs=65.4
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINL 99 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~ 99 (186)
++.+.........++++|||+-||.|.++..++++ ..+|+|+|+++.+++. .+...|++|..++....
T Consensus 280 kl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~------~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~ 353 (432)
T COG2265 280 KLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR------VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEF 353 (432)
T ss_pred HHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc------CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHH
Confidence 56665555555567889999999999999999977 4799999999999765 23445688888887665
Q ss_pred ChhhHhhhCCCCCCccEEEeCCC
Q 038391 100 PSNQVRALSPKQKGFSVILSDMC 122 (186)
Q Consensus 100 ~~~~l~~~~~~~~~~D~V~~d~~ 122 (186)
..... .+..+|.|+.|++
T Consensus 354 ~~~~~-----~~~~~d~VvvDPP 371 (432)
T COG2265 354 TPAWW-----EGYKPDVVVVDPP 371 (432)
T ss_pred hhhcc-----ccCCCCEEEECCC
Confidence 43210 2458999999986
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.2e-06 Score=75.80 Aligned_cols=106 Identities=21% Similarity=0.272 Sum_probs=73.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----------CCCCCeEEEEeeecCCChhhHhhhC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----------HCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----------~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
...+||.+|+|.|..+..+.+..+ ..+|+.||+++..++.+ ..+++++++.+|.......
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~----~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~------ 172 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKT----VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK------ 172 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCC----CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh------
Confidence 457999999999999998888642 36899999999885431 1357899999988754211
Q ss_pred CCCCCccEEEeCCCCCCC-CCcccchHHHHHHHHHHHH-HHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 109 PKQKGFSVILSDMCPSVS-GITTKDAALSVELGMRAVD-LALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
..++||+|++|..-+.. +... . -....+++ .+.+ .|+|||.++++.
T Consensus 173 -~~~~yDvIi~D~~dp~~~~~~~--~----Lyt~eF~~~~~~~------------------~L~p~Gvlv~q~ 220 (336)
T PLN02823 173 -RDEKFDVIIGDLADPVEGGPCY--Q----LYTKSFYERIVKP------------------KLNPGGIFVTQA 220 (336)
T ss_pred -CCCCccEEEecCCCccccCcch--h----hccHHHHHHHHHH------------------hcCCCcEEEEec
Confidence 25689999999631111 1100 0 01335665 6666 999999999874
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.8e-06 Score=71.71 Aligned_cols=100 Identities=21% Similarity=0.278 Sum_probs=70.6
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHh
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVR 105 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~ 105 (186)
.+..++..+...+....|.|+|||-+.+++ .. .-.|+.+|+-+.. -+++..|+.+++.+
T Consensus 167 Pld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~------~~kV~SfDL~a~~---------~~V~~cDm~~vPl~--- 225 (325)
T KOG3045|consen 167 PLDVIIRKIKRRPKNIVIADFGCGEAKIAS---SE------RHKVHSFDLVAVN---------ERVIACDMRNVPLE--- 225 (325)
T ss_pred hHHHHHHHHHhCcCceEEEecccchhhhhh---cc------ccceeeeeeecCC---------CceeeccccCCcCc---
Confidence 345555555544555688999999998776 21 3689999987765 34566788887653
Q ss_pred hhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 106 ALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 106 ~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
++++|++++- ..+-..+ ...++.++.| +||+||.|.|.-..
T Consensus 226 -----d~svDvaV~C-----LSLMgtn-------~~df~kEa~R------------------iLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 226 -----DESVDVAVFC-----LSLMGTN-------LADFIKEANR------------------ILKPGGLLYIAEVK 266 (325)
T ss_pred -----cCcccEEEee-----Hhhhccc-------HHHHHHHHHH------------------HhccCceEEEEehh
Confidence 7899999772 1121122 5579999999 99999999987654
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.7e-06 Score=71.09 Aligned_cols=82 Identities=17% Similarity=0.250 Sum_probs=64.5
Q ss_pred HHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cC--CCCCeEEEEeeecCCC
Q 038391 28 LQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LH--CDARVQTVSADVINLP 100 (186)
Q Consensus 28 ~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~--~~~~~~~~~~d~~~~~ 100 (186)
++-+..-..++++..||++|.|||.+|..+.+. +.+|+++|+++.|++. .. ....++++.+|+....
T Consensus 47 ~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~------~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 47 IDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA------GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD 120 (315)
T ss_pred HHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh------cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC
Confidence 333444456899999999999999999999998 6899999999999654 22 2367899999998764
Q ss_pred hhhHhhhCCCCCCccEEEeCCCCCC
Q 038391 101 SNQVRALSPKQKGFSVILSDMCPSV 125 (186)
Q Consensus 101 ~~~l~~~~~~~~~~D~V~~d~~~~~ 125 (186)
. ..||++++|.++..
T Consensus 121 ~----------P~fd~cVsNlPyqI 135 (315)
T KOG0820|consen 121 L----------PRFDGCVSNLPYQI 135 (315)
T ss_pred C----------cccceeeccCCccc
Confidence 2 37999999876443
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.2e-06 Score=72.87 Aligned_cols=96 Identities=18% Similarity=0.210 Sum_probs=64.9
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEE
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~ 118 (186)
...++||||+|.|..|..++..+ .+|++.|+|+.|...-.. .+.+.+ +..+... .+.+||+|.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f------~~v~aTE~S~~Mr~rL~~-kg~~vl--~~~~w~~--------~~~~fDvIs 156 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF------KEVYATEASPPMRWRLSK-KGFTVL--DIDDWQQ--------TDFKFDVIS 156 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc------ceEEeecCCHHHHHHHHh-CCCeEE--ehhhhhc--------cCCceEEEe
Confidence 35689999999999999999987 579999999999432111 123333 3222211 246899998
Q ss_pred eCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 119 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
|- +..-. .......+..+++ .|+|+|++++.+.
T Consensus 157 cL-----NvLDR------c~~P~~LL~~i~~------------------~l~p~G~lilAvV 189 (265)
T PF05219_consen 157 CL-----NVLDR------CDRPLTLLRDIRR------------------ALKPNGRLILAVV 189 (265)
T ss_pred eh-----hhhhc------cCCHHHHHHHHHH------------------HhCCCCEEEEEEE
Confidence 81 11111 2225567777777 8999999998764
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.6e-06 Score=71.04 Aligned_cols=78 Identities=15% Similarity=0.244 Sum_probs=62.7
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC---c-CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS---L-HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~---~-~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.+.++..||++|+|.|.+|..++++ +.+|++||+++.+++. . ....+++++++|+.......+
T Consensus 27 ~~~~~d~VlEIGpG~GaLT~~Ll~~------~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l------- 93 (259)
T COG0030 27 NISPGDNVLEIGPGLGALTEPLLER------AARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSL------- 93 (259)
T ss_pred CCCCCCeEEEECCCCCHHHHHHHhh------cCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhh-------
Confidence 3566899999999999999999998 5789999999999654 1 245789999999998865422
Q ss_pred CCccEEEeCCCCCCC
Q 038391 112 KGFSVILSDMCPSVS 126 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~ 126 (186)
-+++.|++|.+.+++
T Consensus 94 ~~~~~vVaNlPY~Is 108 (259)
T COG0030 94 AQPYKVVANLPYNIS 108 (259)
T ss_pred cCCCEEEEcCCCccc
Confidence 178999999875543
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.6e-06 Score=66.55 Aligned_cols=113 Identities=14% Similarity=0.217 Sum_probs=74.9
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCChhhHhhhCCCCCCc
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~ 114 (186)
.+.++++|||+|..+.++++..++ .....+.||++.+.+. .....++..++.|..+-- ..+++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~---~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l---------~~~~V 111 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGP---QALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGL---------RNESV 111 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCC---CceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhh---------ccCCc
Confidence 678999999999999999999864 6789999999998654 223345677777764321 23799
Q ss_pred cEEEeCCCCCCCCC-----cccc-----hHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 115 SVILSDMCPSVSGI-----TTKD-----AALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 115 D~V~~d~~~~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
|+++.|.+.-.... ..+. .....+.....+..... +|.|.|.+++..++.
T Consensus 112 DvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~------------------iLSp~Gv~Ylv~~~~ 171 (209)
T KOG3191|consen 112 DVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPD------------------ILSPRGVFYLVALRA 171 (209)
T ss_pred cEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhh------------------hcCcCceEEeeehhh
Confidence 99999875321111 1110 01112223344444444 899999999887764
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.7e-06 Score=75.38 Aligned_cols=76 Identities=18% Similarity=0.298 Sum_probs=53.5
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhC-----C
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALS-----P 109 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~-----~ 109 (186)
.+|||++||+|.++..+++.. .+|+|||+++.+++.+ ....+++++++|+.+.... +.... .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~------~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~-~~~~~~~~~~~ 280 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF------RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQA-MNGVREFNRLK 280 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC------CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHH-Hhhcccccccc
Confidence 579999999999999988873 6899999999997541 2224788999988653211 11000 0
Q ss_pred ----CCCCccEEEeCCCC
Q 038391 110 ----KQKGFSVILSDMCP 123 (186)
Q Consensus 110 ----~~~~~D~V~~d~~~ 123 (186)
...+||+|+.|+|.
T Consensus 281 ~~~~~~~~~D~v~lDPPR 298 (362)
T PRK05031 281 GIDLKSYNFSTIFVDPPR 298 (362)
T ss_pred cccccCCCCCEEEECCCC
Confidence 02258999999873
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.9e-06 Score=74.88 Aligned_cols=76 Identities=18% Similarity=0.229 Sum_probs=52.7
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHh--hh---C-
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVR--AL---S- 108 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~--~~---~- 108 (186)
.+|||+|||+|.++..+++.. .+|+|+|+++.+++.+ ....+++++++|+.+....... .+ .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~------~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 272 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF------RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKG 272 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC------CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccc
Confidence 479999999999999999873 5899999999997541 2224688999988653211000 00 0
Q ss_pred --CCCCCccEEEeCCC
Q 038391 109 --PKQKGFSVILSDMC 122 (186)
Q Consensus 109 --~~~~~~D~V~~d~~ 122 (186)
.....||+|+.|++
T Consensus 273 ~~~~~~~~d~v~lDPP 288 (353)
T TIGR02143 273 IDLKSYNCSTIFVDPP 288 (353)
T ss_pred cccccCCCCEEEECCC
Confidence 00124899999986
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.5e-07 Score=75.89 Aligned_cols=93 Identities=19% Similarity=0.272 Sum_probs=52.0
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCC---CCCCCeEEEEeCCCCCCCC-------cC-CCCCeEEEEee
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGP---LDNGGSVVGIDVKKVKVPS-------LH-CDARVQTVSAD 95 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~---~~~~~~v~gvDis~~~i~~-------~~-~~~~~~~~~~d 95 (186)
+.++........++.+|+|.+||+|.++..+.+.+.. .....+++|+|+++.++.. +. ......+..+|
T Consensus 34 i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d 113 (311)
T PF02384_consen 34 IVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGD 113 (311)
T ss_dssp HHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-
T ss_pred HHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccc
Confidence 3444444334577889999999999999988875410 0014799999999987432 11 11223466676
Q ss_pred ecCCChhhHhhhCCCCCCccEEEeCCCCCC
Q 038391 96 VINLPSNQVRALSPKQKGFSVILSDMCPSV 125 (186)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~ 125 (186)
........ ...+||+|++|+|...
T Consensus 114 ~l~~~~~~------~~~~~D~ii~NPPf~~ 137 (311)
T PF02384_consen 114 SLENDKFI------KNQKFDVIIGNPPFGS 137 (311)
T ss_dssp TTTSHSCT------ST--EEEEEEE--CTC
T ss_pred cccccccc------cccccccccCCCCccc
Confidence 54332110 1468999999986443
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.9e-06 Score=78.17 Aligned_cols=110 Identities=13% Similarity=0.113 Sum_probs=74.7
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
..+..+||||||.|.++..+|...+ ...++|+|+....+.. ...-.|+.++..|+.. +.... +.
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p----~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~-----~~~~~-~~ 415 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNP----DALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDL-----ILNDL-PN 415 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCC----CCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHH-----HHHhc-Cc
Confidence 3456899999999999999999975 4899999999976443 1223467776665432 22222 46
Q ss_pred CCccEEEeCCC-CCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 112 KGFSVILSDMC-PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 112 ~~~D~V~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
+++|.|+.+.+ |+...-|...+.. ...++....+ .|||||.+.+++
T Consensus 416 ~sv~~i~i~FPDPWpKkrh~krRl~----~~~fl~~~~~------------------~Lk~gG~i~~~T 462 (506)
T PRK01544 416 NSLDGIYILFPDPWIKNKQKKKRIF----NKERLKILQD------------------KLKDNGNLVFAS 462 (506)
T ss_pred ccccEEEEECCCCCCCCCCcccccc----CHHHHHHHHH------------------hcCCCCEEEEEc
Confidence 78999988764 3333333332211 2356666676 999999998875
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.1e-06 Score=70.96 Aligned_cols=105 Identities=17% Similarity=0.153 Sum_probs=62.4
Q ss_pred CEEEEEcccCCh--HH--HHHHHHhCCCCCCCeEEEEeCCCCCCCCcC--------------------------------
Q 038391 41 SSVLDLGCAPGA--WL--QVACQSLGPLDNGGSVVGIDVKKVKVPSLH-------------------------------- 84 (186)
Q Consensus 41 ~~vLDlGcG~G~--~~--~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-------------------------------- 84 (186)
-+|+..||++|. ++ ..+.+.++......+|+|.||++.+|+.+.
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 589999999995 33 333343322112468999999998864310
Q ss_pred -----CCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCC
Q 038391 85 -----CDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNN 159 (186)
Q Consensus 85 -----~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (186)
....++|.+.|+.+.+.. +.+.||+|+|.- . .++. + .+....++....+
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~-------~~~~fD~I~cRN---v-liyF-~----~~~~~~vl~~l~~---------- 250 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWA-------VPGPFDAIFCRN---V-MIYF-D----KTTQERILRRFVP---------- 250 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCc-------cCCCcceeeHhh---H-HhcC-C----HHHHHHHHHHHHH----------
Confidence 002345555555432211 246899999931 1 1111 1 2335567777777
Q ss_pred CCCCCCCcccccCcEEEEEE
Q 038391 160 SDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 160 ~~~~~~~~~LkpgG~lvi~~ 179 (186)
.|+|||.|++-.
T Consensus 251 --------~L~pgG~L~lG~ 262 (287)
T PRK10611 251 --------LLKPDGLLFAGH 262 (287)
T ss_pred --------HhCCCcEEEEeC
Confidence 999999998764
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.7e-07 Score=68.53 Aligned_cols=76 Identities=22% Similarity=0.398 Sum_probs=55.2
Q ss_pred EEEeCCCCCCCCcC---------CCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHH
Q 038391 71 VGIDVKKVKVPSLH---------CDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGM 141 (186)
Q Consensus 71 ~gvDis~~~i~~~~---------~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~ 141 (186)
.|+|+|+.|++.++ ...+++++++|+.+++. ++++||+|++.. +.+.... ..
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~--------~~~~fD~v~~~~-----~l~~~~d------~~ 61 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF--------DDCEFDAVTMGY-----GLRNVVD------RL 61 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC--------CCCCeeEEEecc-----hhhcCCC------HH
Confidence 48999999986421 12368999999887753 367999999843 2332221 55
Q ss_pred HHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 142 RAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
.++.++.+ +|||||.|+|..+.-+
T Consensus 62 ~~l~ei~r------------------vLkpGG~l~i~d~~~~ 85 (160)
T PLN02232 62 RAMKEMYR------------------VLKPGSRVSILDFNKS 85 (160)
T ss_pred HHHHHHHH------------------HcCcCeEEEEEECCCC
Confidence 78888888 9999999999877643
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.2e-05 Score=63.02 Aligned_cols=122 Identities=24% Similarity=0.234 Sum_probs=64.2
Q ss_pred hhhhHHhHHHHHHH------cCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cC--
Q 038391 20 VARSAFKLLQIQKQ------YKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LH-- 84 (186)
Q Consensus 20 ~~r~~~~l~~~~~~------~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~-- 84 (186)
.+.++..|.+.+.. .....++.+||+||||+|..+..++...+ ..+|+..|..+ .+.. +.
T Consensus 20 vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~----~~~Vv~TD~~~-~l~~l~~Ni~~N~~~ 94 (173)
T PF10294_consen 20 VWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFG----AARVVLTDYNE-VLELLRRNIELNGSL 94 (173)
T ss_dssp ---HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-----SEEEEEE-S--HHHHHHHHHHTT---
T ss_pred EechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccC----CceEEEeccch-hhHHHHHHHHhcccc
Confidence 45556666655444 23356788999999999999988888743 47999999998 4322 11
Q ss_pred CCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCC
Q 038391 85 CDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSST 164 (186)
Q Consensus 85 ~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (186)
...++.+...|-.+.... ... ..++||+|++. .-.+... .....+....+
T Consensus 95 ~~~~v~v~~L~Wg~~~~~---~~~-~~~~~D~Ilas-----Dv~Y~~~------~~~~L~~tl~~--------------- 144 (173)
T PF10294_consen 95 LDGRVSVRPLDWGDELDS---DLL-EPHSFDVILAS-----DVLYDEE------LFEPLVRTLKR--------------- 144 (173)
T ss_dssp -----EEEE--TTS-HHH---HHH-S-SSBSEEEEE-----S--S-GG------GHHHHHHHHHH---------------
T ss_pred ccccccCcEEEecCcccc---ccc-ccccCCEEEEe-----cccchHH------HHHHHHHHHHH---------------
Confidence 234556555554332111 111 24689999982 1223322 24556666666
Q ss_pred CCcccccCcEEEEEE
Q 038391 165 DSGVLKPGGHLVIKL 179 (186)
Q Consensus 165 ~~~~LkpgG~lvi~~ 179 (186)
+|+++|.+++..
T Consensus 145 ---ll~~~~~vl~~~ 156 (173)
T PF10294_consen 145 ---LLKPNGKVLLAY 156 (173)
T ss_dssp ---HBTT-TTEEEEE
T ss_pred ---HhCCCCEEEEEe
Confidence 888988866554
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.4e-05 Score=64.34 Aligned_cols=118 Identities=20% Similarity=0.184 Sum_probs=72.0
Q ss_pred HHHHHHcCCCCCCC-EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCC
Q 038391 28 LQIQKQYKLIKPGS-SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINL 99 (186)
Q Consensus 28 ~~~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~ 99 (186)
.+++.++ +++.. +||+||||+|....++++.++. .+-.--|+.+..... .....-..-+..|++..
T Consensus 15 l~vL~~~--l~~~~~~vLEiaSGtGqHa~~FA~~lP~----l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~ 88 (204)
T PF06080_consen 15 LEVLKQY--LPDSGTRVLEIASGTGQHAVYFAQALPH----LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAP 88 (204)
T ss_pred HHHHHHH--hCccCceEEEEcCCccHHHHHHHHHCCC----CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCC
Confidence 4444443 23443 5999999999999999999863 666666777766422 11111112234566554
Q ss_pred ChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 100 PSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 100 ~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
.......-.....+||.|+| .+..|.. ..+.++..+..+.+ .|++||.|++=
T Consensus 89 ~w~~~~~~~~~~~~~D~i~~-----~N~lHI~----p~~~~~~lf~~a~~------------------~L~~gG~L~~Y 140 (204)
T PF06080_consen 89 PWPWELPAPLSPESFDAIFC-----INMLHIS----PWSAVEGLFAGAAR------------------LLKPGGLLFLY 140 (204)
T ss_pred CCccccccccCCCCcceeee-----hhHHHhc----CHHHHHHHHHHHHH------------------hCCCCCEEEEe
Confidence 21100000002468999998 3334443 35667788888888 99999999873
|
The function of this family is unknown. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.11 E-value=9.7e-07 Score=68.85 Aligned_cols=71 Identities=20% Similarity=0.315 Sum_probs=46.3
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
+.|+|++||.|+.++.+|+.+ .+|++||+++.++.- .....++.++++|+.+.... +. ....
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~------~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~----~~-~~~~ 69 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF------DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKR----LK-SNKI 69 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-------EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGG----B------
T ss_pred CEEEEeccCcCHHHHHHHHhC------CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhh----cc-cccc
Confidence 379999999999999999984 689999999998653 22356899999998764321 11 1112
Q ss_pred ccEEEeCCC
Q 038391 114 FSVILSDMC 122 (186)
Q Consensus 114 ~D~V~~d~~ 122 (186)
+|+|+.++|
T Consensus 70 ~D~vFlSPP 78 (163)
T PF09445_consen 70 FDVVFLSPP 78 (163)
T ss_dssp -SEEEE---
T ss_pred ccEEEECCC
Confidence 899999763
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.2e-05 Score=65.55 Aligned_cols=104 Identities=18% Similarity=0.237 Sum_probs=78.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC-------CcCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP-------SLHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~-------~~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
-.+++.||+|.=+|+-+..+|..+++ +++|+++|+.+...+ .+.....++++++.+.+--.+.+.+. .
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~---dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~--~ 146 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPE---DGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADG--E 146 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCC---CceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcC--C
Confidence 45789999999999999999999987 799999999997743 25566789999998765333333333 3
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
.+.||+++.|. +.+. -....+.+.+ +||+||.|++-
T Consensus 147 ~~tfDfaFvDa--------dK~n------Y~~y~e~~l~------------------Llr~GGvi~~D 182 (237)
T KOG1663|consen 147 SGTFDFAFVDA--------DKDN------YSNYYERLLR------------------LLRVGGVIVVD 182 (237)
T ss_pred CCceeEEEEcc--------chHH------HHHHHHHHHh------------------hcccccEEEEe
Confidence 67999999964 2221 2256666666 99999999874
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=5e-06 Score=73.05 Aligned_cols=95 Identities=24% Similarity=0.211 Sum_probs=65.9
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
++.+|||++||+|..+..++...+ ..+|+++|+++..++.. +...++.+.++|+..+.. ..+
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~----~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~--------~~~ 124 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETG----VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLH--------EER 124 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHh--------hcC
Confidence 356899999999999999998753 25899999999886531 122345567777643211 035
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
+||+|+.|+. |. ...+++.+.+ .+++||.+.++
T Consensus 125 ~fD~V~lDP~----Gs-----------~~~~l~~al~------------------~~~~~gilyvS 157 (382)
T PRK04338 125 KFDVVDIDPF----GS-----------PAPFLDSAIR------------------SVKRGGLLCVT 157 (382)
T ss_pred CCCEEEECCC----CC-----------cHHHHHHHHH------------------HhcCCCEEEEE
Confidence 7999999862 21 1135555444 78999999998
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.7e-06 Score=70.98 Aligned_cols=105 Identities=18% Similarity=0.197 Sum_probs=73.7
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC--CCCeEEE--EeeecCCChhhHhhhCCCCCCc
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC--DARVQTV--SADVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~--~~~~~~~--~~d~~~~~~~~l~~~~~~~~~~ 114 (186)
.-..++|+|||.|....++...- -.+++-+|.|..|++..+. ++.+... .+|-.-+++ ..+++
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-----vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf--------~ens~ 138 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-----VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDF--------KENSV 138 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-----hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccc--------cccch
Confidence 35689999999999999998872 3589999999999887432 2333333 344322222 46899
Q ss_pred cEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCCC
Q 038391 115 SVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDA 185 (186)
Q Consensus 115 D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~ 185 (186)
|+|++.++ .|+.++ ...++..+.. .|||.|.|+-.+|-|+.+
T Consensus 139 DLiisSls-----lHW~Nd------LPg~m~~ck~------------------~lKPDg~FiasmlggdTL 180 (325)
T KOG2940|consen 139 DLIISSLS-----LHWTND------LPGSMIQCKL------------------ALKPDGLFIASMLGGDTL 180 (325)
T ss_pred hhhhhhhh-----hhhhcc------CchHHHHHHH------------------hcCCCccchhHHhccccH
Confidence 99999653 444443 3444555555 899999999999988763
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.6e-05 Score=67.11 Aligned_cols=102 Identities=19% Similarity=0.194 Sum_probs=75.9
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----------cCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----------LHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----------~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
++||-+|-|.|+.++.+.++.+ -.+++.|||.+..++. ...++|++++..|....-.. .
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~----ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~----~--- 146 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLP----VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD----C--- 146 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCC----cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHh----C---
Confidence 6999999999999999999954 2699999999988543 11258899998887654322 2
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
.++||+|++|...+.+...... ...+.+.+.+ .|+++|+++.+
T Consensus 147 ~~~fDvIi~D~tdp~gp~~~Lf-------t~eFy~~~~~------------------~L~~~Gi~v~q 189 (282)
T COG0421 147 EEKFDVIIVDSTDPVGPAEALF-------TEEFYEGCRR------------------ALKEDGIFVAQ 189 (282)
T ss_pred CCcCCEEEEcCCCCCCcccccC-------CHHHHHHHHH------------------hcCCCcEEEEe
Confidence 3489999998753321111111 4578888888 99999999998
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=98.06 E-value=2e-05 Score=63.54 Aligned_cols=111 Identities=23% Similarity=0.344 Sum_probs=57.9
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCC-----CCcCCCCCeEEEEeeecCCCh-hhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKV-----PSLHCDARVQTVSADVINLPS-NQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i-----~~~~~~~~~~~~~~d~~~~~~-~~l~~~~~~ 110 (186)
++|. .|+++|...|+-+..++..+...++.++|+||||.-... +.+....+++++++|..+... ..+..+. .
T Consensus 31 ~kPd-~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~-~ 108 (206)
T PF04989_consen 31 LKPD-LIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELA-S 108 (206)
T ss_dssp H--S-EEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred hCCC-eEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhh-c
Confidence 4444 999999999999988886553222368999999954442 323344799999999876542 1111221 1
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
.....+|+.|. .|..++ +...++.... ++++|+++|+.-
T Consensus 109 ~~~~vlVilDs------~H~~~h------vl~eL~~y~p------------------lv~~G~Y~IVeD 147 (206)
T PF04989_consen 109 PPHPVLVILDS------SHTHEH------VLAELEAYAP------------------LVSPGSYLIVED 147 (206)
T ss_dssp --SSEEEEESS----------SS------HHHHHHHHHH------------------T--TT-EEEETS
T ss_pred cCCceEEEECC------CccHHH------HHHHHHHhCc------------------cCCCCCEEEEEe
Confidence 24556888865 444444 3344444444 899999998753
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=1e-05 Score=69.92 Aligned_cols=106 Identities=21% Similarity=0.246 Sum_probs=77.3
Q ss_pred HHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhH
Q 038391 32 KQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQV 104 (186)
Q Consensus 32 ~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l 104 (186)
....+..+|++|||+.||.|.+++.++..- ..+|+++|++|..+.. +.....+..+++|+......
T Consensus 181 Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g-----~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~-- 253 (341)
T COG2520 181 RVAELVKEGETVLDMFAGVGPFSIPIAKKG-----RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE-- 253 (341)
T ss_pred HHHhhhcCCCEEEEccCCcccchhhhhhcC-----CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhc--
Confidence 333445779999999999999999999982 3459999999988432 45556688999998876533
Q ss_pred hhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 105 RALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 105 ~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
-+.+|-|+.+.+. . ...++..+.+ .+++||++-.-.+.-+
T Consensus 254 ------~~~aDrIim~~p~---~------------a~~fl~~A~~------------------~~k~~g~iHyy~~~~e 293 (341)
T COG2520 254 ------LGVADRIIMGLPK---S------------AHEFLPLALE------------------LLKDGGIIHYYEFVPE 293 (341)
T ss_pred ------cccCCEEEeCCCC---c------------chhhHHHHHH------------------HhhcCcEEEEEeccch
Confidence 2689999986642 1 1245555666 8888998877665443
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.9e-06 Score=72.91 Aligned_cols=91 Identities=19% Similarity=0.316 Sum_probs=54.5
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINL 99 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~ 99 (186)
++.+....+...+++ .|||+.||.|.++..+++.+ .+|+|||+++.++..+ +...+++|+++++.++
T Consensus 184 ~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~------~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 184 KLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA------KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDF 256 (352)
T ss_dssp HHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS------SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHC
T ss_pred HHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC------CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccch
Confidence 455544444434445 89999999999999999984 7999999999997542 3346899998876554
Q ss_pred Chh--------hHhhhCCCCCCccEEEeCCCC
Q 038391 100 PSN--------QVRALSPKQKGFSVILSDMCP 123 (186)
Q Consensus 100 ~~~--------~l~~~~~~~~~~D~V~~d~~~ 123 (186)
... .+.........+|+|+.|+|.
T Consensus 257 ~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR 288 (352)
T PF05958_consen 257 AKALAKAREFNRLKGIDLKSFKFDAVILDPPR 288 (352)
T ss_dssp CCHHCCS-GGTTGGGS-GGCTTESEEEE---T
T ss_pred hHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCC
Confidence 211 111111123478999999863
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.9e-06 Score=66.75 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=57.3
Q ss_pred CCEEEEEcccCCh--HH--HHHHHHhCCCC-CCCeEEEEeCCCCCCCCc-------------------------------
Q 038391 40 GSSVLDLGCAPGA--WL--QVACQSLGPLD-NGGSVVGIDVKKVKVPSL------------------------------- 83 (186)
Q Consensus 40 ~~~vLDlGcG~G~--~~--~~l~~~~~~~~-~~~~v~gvDis~~~i~~~------------------------------- 83 (186)
.-+|+..||++|. ++ ..+.+..+... ...+|+|.||++..++.+
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 3589999999995 33 33334222111 135999999999775320
Q ss_pred ---CCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCC
Q 038391 84 ---HCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNS 160 (186)
Q Consensus 84 ---~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (186)
....+++|.+.|+.+.. . ..+.||+|+|. +..- .-..+.....++...+
T Consensus 112 v~~~lr~~V~F~~~NL~~~~-~-------~~~~fD~I~CR-----NVlI----YF~~~~~~~vl~~l~~----------- 163 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLDPD-P-------PFGRFDLIFCR-----NVLI----YFDPETQQRVLRRLHR----------- 163 (196)
T ss_dssp E-HHHHTTEEEEE--TT-S--------------EEEEEE------SSGG----GS-HHHHHHHHHHHGG-----------
T ss_pred EChHHcCceEEEecccCCCC-c-------ccCCccEEEec-----CEEE----EeCHHHHHHHHHHHHH-----------
Confidence 01135777777776611 1 35799999993 2121 2223446677777887
Q ss_pred CCCCCCcccccCcEEEEEE
Q 038391 161 DSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 161 ~~~~~~~~LkpgG~lvi~~ 179 (186)
.|+|||.|++-.
T Consensus 164 -------~L~pgG~L~lG~ 175 (196)
T PF01739_consen 164 -------SLKPGGYLFLGH 175 (196)
T ss_dssp -------GEEEEEEEEE-T
T ss_pred -------HcCCCCEEEEec
Confidence 999999999853
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.1e-06 Score=70.06 Aligned_cols=106 Identities=20% Similarity=0.185 Sum_probs=74.6
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----------cCCCCCeEEEEeeecCCChhhHhhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----------LHCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----------~~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
+..++||-+|-|.|..+..+.+..+ -.+|+.||+++..++. ...+++++++.+|....-.. .
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~----~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~----~ 146 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPP----VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKE----T 146 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-----SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHT----S
T ss_pred CCcCceEEEcCCChhhhhhhhhcCC----cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHh----c
Confidence 4578999999999999999988743 3689999999988543 12467899999987654222 2
Q ss_pred CCCCC-CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 108 SPKQK-GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 108 ~~~~~-~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
.+ +||+|+.|..-+....... ....+++.+.+ .|+|+|.++++.
T Consensus 147 ---~~~~yDvIi~D~~dp~~~~~~l-------~t~ef~~~~~~------------------~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 147 ---QEEKYDVIIVDLTDPDGPAPNL-------FTREFYQLCKR------------------RLKPDGVLVLQA 191 (246)
T ss_dssp ---SST-EEEEEEESSSTTSCGGGG-------SSHHHHHHHHH------------------HEEEEEEEEEEE
T ss_pred ---cCCcccEEEEeCCCCCCCcccc-------cCHHHHHHHHh------------------hcCCCcEEEEEc
Confidence 34 8999999874322111111 14578888888 999999999986
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.1e-06 Score=69.71 Aligned_cols=105 Identities=27% Similarity=0.384 Sum_probs=80.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
...+..++|.|||.|-.+..- +...++|.|++...+..+..........+|+.+++.. ..+||.
T Consensus 43 ~~~gsv~~d~gCGngky~~~~--------p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~--------~~s~d~ 106 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLGVN--------PLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFR--------EESFDA 106 (293)
T ss_pred cCCcceeeecccCCcccCcCC--------CcceeeecchhhhhccccccCCCceeehhhhhcCCCC--------CCcccc
Confidence 445889999999999654321 2478999999999887655444436677888887754 578999
Q ss_pred EEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 117 V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
+++ .....+..+......++++..+ .|+|||...|-.|.-+
T Consensus 107 ~ls--------iavihhlsT~~RR~~~l~e~~r------------------~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 107 ALS--------IAVIHHLSTRERRERALEELLR------------------VLRPGGNALVYVWALE 147 (293)
T ss_pred chh--------hhhhhhhhhHHHHHHHHHHHHH------------------HhcCCCceEEEEehhh
Confidence 887 4455566677778899999998 9999999988877543
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.4e-05 Score=60.41 Aligned_cols=79 Identities=19% Similarity=0.197 Sum_probs=58.9
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-cCCCCCeEEEEeeecCCChhhHhhhCCCCCCcc
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-LHCDARVQTVSADVINLPSNQVRALSPKQKGFS 115 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D 115 (186)
...|.-||++|+|+|.+|..+.++.-. ...++++|+++..... ++..+.++++.+|+.++.. .+.+. ++..||
T Consensus 46 pesglpVlElGPGTGV~TkaIL~~gv~---~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~-~l~e~--~gq~~D 119 (194)
T COG3963 46 PESGLPVLELGPGTGVITKAILSRGVR---PESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRT-TLGEH--KGQFFD 119 (194)
T ss_pred cccCCeeEEEcCCccHhHHHHHhcCCC---ccceEEEEeCHHHHHHHHHhCCCccccccchhhHHH-HHhhc--CCCeee
Confidence 355779999999999999999988532 4689999999988644 4455667788898876642 12222 367899
Q ss_pred EEEeCC
Q 038391 116 VILSDM 121 (186)
Q Consensus 116 ~V~~d~ 121 (186)
.|+|..
T Consensus 120 ~viS~l 125 (194)
T COG3963 120 SVISGL 125 (194)
T ss_pred eEEecc
Confidence 999954
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.1e-06 Score=63.66 Aligned_cols=72 Identities=18% Similarity=0.290 Sum_probs=52.9
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc---C--CCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL---H--CDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~---~--~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
.|+.++|+|||+|-+....+- ++ ...|+|+||.++.++-. . ..-++.+++.|+..+-.. ++.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm-~~----~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~--------~g~ 114 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSM-PK----NESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELK--------GGI 114 (185)
T ss_pred cCcchhhhcCchhhhHHHhhc-CC----CceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhcc--------CCe
Confidence 588999999999988833332 32 36899999999997641 1 123567888888776432 578
Q ss_pred ccEEEeCCCC
Q 038391 114 FSVILSDMCP 123 (186)
Q Consensus 114 ~D~V~~d~~~ 123 (186)
||.++.|+++
T Consensus 115 fDtaviNppF 124 (185)
T KOG3420|consen 115 FDTAVINPPF 124 (185)
T ss_pred EeeEEecCCC
Confidence 9999998863
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.2e-06 Score=59.36 Aligned_cols=98 Identities=21% Similarity=0.274 Sum_probs=42.8
Q ss_pred EEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCC---C---CCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEE
Q 038391 44 LDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKV---K---VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVI 117 (186)
Q Consensus 44 LDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~---~---i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V 117 (186)
|++|+..|..+..+++.+... +.++++++|..+. . ++......++++++++..+. +..+. .+++|++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~-~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~----l~~~~--~~~~dli 73 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDN-GRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDF----LPSLP--DGPIDLI 73 (106)
T ss_dssp ---------------------------EEEESS------------GGG-BTEEEEES-THHH----HHHHH--H--EEEE
T ss_pred Ccccccccccccccccccccc-ccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHH----HHHcC--CCCEEEE
Confidence 689999999999999887641 1138999999993 2 22234456799999987542 33332 4699999
Q ss_pred EeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 118 LSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 118 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
+.|+. |.. +.....+..+.. .|+|||.+++-
T Consensus 74 ~iDg~------H~~------~~~~~dl~~~~~------------------~l~~ggviv~d 104 (106)
T PF13578_consen 74 FIDGD------HSY------EAVLRDLENALP------------------RLAPGGVIVFD 104 (106)
T ss_dssp EEES---------H------HHHHHHHHHHGG------------------GEEEEEEEEEE
T ss_pred EECCC------CCH------HHHHHHHHHHHH------------------HcCCCeEEEEe
Confidence 99763 332 225566777777 89999999874
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.2e-05 Score=62.36 Aligned_cols=98 Identities=19% Similarity=0.191 Sum_probs=68.2
Q ss_pred cCCCCCCC-EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhh
Q 038391 34 YKLIKPGS-SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRA 106 (186)
Q Consensus 34 ~~~~~~~~-~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~ 106 (186)
...++... +++|+|+|.|.-+..++=..+ ..+++.+|....++.. .-.-.++++++..+.+..
T Consensus 42 ~~~~~~~~~~~lDiGSGaGfPGipLaI~~p----~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~------ 111 (184)
T PF02527_consen 42 LPFLPDFGKKVLDIGSGAGFPGIPLAIARP----DLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPE------ 111 (184)
T ss_dssp GGCS-CCCSEEEEETSTTTTTHHHHHHH-T----TSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTT------
T ss_pred hhhhccCCceEEecCCCCCChhHHHHHhCC----CCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccc------
Confidence 33445544 899999999999999998775 4899999999988543 112246888888776511
Q ss_pred hCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 107 LSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 107 ~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
...+||+|++.+ ... ....+..+.. +|++||.+++
T Consensus 112 ---~~~~fd~v~aRA------v~~---------l~~l~~~~~~------------------~l~~~G~~l~ 146 (184)
T PF02527_consen 112 ---YRESFDVVTARA------VAP---------LDKLLELARP------------------LLKPGGRLLA 146 (184)
T ss_dssp ---TTT-EEEEEEES------SSS---------HHHHHHHHGG------------------GEEEEEEEEE
T ss_pred ---cCCCccEEEeeh------hcC---------HHHHHHHHHH------------------hcCCCCEEEE
Confidence 357999999944 232 3367777777 9999998764
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.4e-05 Score=70.46 Aligned_cols=80 Identities=18% Similarity=0.223 Sum_probs=57.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhC---C---------C--------------------------CCCCeEEEEeCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLG---P---------L--------------------------DNGGSVVGIDVKKV 78 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~---~---------~--------------------------~~~~~v~gvDis~~ 78 (186)
.+++..++|.+||+|.+.+..+.... + . ....+++|+|+++.
T Consensus 188 ~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~ 267 (702)
T PRK11783 188 PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPR 267 (702)
T ss_pred CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHH
Confidence 36788999999999999988876411 0 0 01237999999999
Q ss_pred CCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCC
Q 038391 79 KVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMC 122 (186)
Q Consensus 79 ~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~ 122 (186)
++.. +.....+.+.++|+.++.... ..++||+|++|+|
T Consensus 268 av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~------~~~~~d~IvtNPP 312 (702)
T PRK11783 268 VIQAARKNARRAGVAELITFEVKDVADLKNPL------PKGPTGLVISNPP 312 (702)
T ss_pred HHHHHHHHHHHcCCCcceEEEeCChhhccccc------ccCCCCEEEECCC
Confidence 9754 334456889999988764321 2357999999976
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.88 E-value=7.1e-05 Score=63.29 Aligned_cols=111 Identities=18% Similarity=0.186 Sum_probs=78.8
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
.-+|||++||.|....-+....+.. ..+|.-.|+++..++. .....-++|.++|+.+.. .++.+ ..
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~--~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~--~l~~l---~p 208 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPER--PDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRD--SLAAL---DP 208 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCC--CceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHh--Hhhcc---CC
Confidence 4589999999999988888876531 2589999999988654 345555699999987643 33333 34
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE--ccCC
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL--LESQ 183 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~--~~~~ 183 (186)
..++++. +|.+... ...+++...+.-... .+.|||+||-+- ||.+
T Consensus 209 ~P~l~iV------sGL~ElF--~Dn~lv~~sl~gl~~------------------al~pgG~lIyTgQPwHPQ 255 (311)
T PF12147_consen 209 APTLAIV------SGLYELF--PDNDLVRRSLAGLAR------------------ALEPGGYLIYTGQPWHPQ 255 (311)
T ss_pred CCCEEEE------ecchhhC--CcHHHHHHHHHHHHH------------------HhCCCcEEEEcCCCCCcc
Confidence 6799987 4454432 233556667777776 899999999776 6543
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.6e-05 Score=68.38 Aligned_cols=95 Identities=21% Similarity=0.212 Sum_probs=66.8
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCCCCc
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~ 114 (186)
-+|||+.||+|..++.++...+. ..+|+++|+++..++.. +...++.+++.|+...... ...+|
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~g---a~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~-------~~~~f 115 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEG---VREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRY-------RNRKF 115 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCC---CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH-------hCCCC
Confidence 58999999999999999987421 35899999999885431 1123567777776544211 13579
Q ss_pred cEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 115 SVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 115 D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
|+|..|+. | . ...+++.+.+ .+++||.|.++
T Consensus 116 DvIdlDPf----G--s---------~~~fld~al~------------------~~~~~glL~vT 146 (374)
T TIGR00308 116 HVIDIDPF----G--T---------PAPFVDSAIQ------------------ASAERGLLLVT 146 (374)
T ss_pred CEEEeCCC----C--C---------cHHHHHHHHH------------------hcccCCEEEEE
Confidence 99999862 1 1 1146666666 78999999987
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00021 Score=61.45 Aligned_cols=81 Identities=14% Similarity=0.165 Sum_probs=52.4
Q ss_pred hhhhhHHhHHH--HHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----c-CCCCCeE
Q 038391 19 YVARSAFKLLQ--IQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----L-HCDARVQ 90 (186)
Q Consensus 19 y~~r~~~~l~~--~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~-~~~~~~~ 90 (186)
|-.|....+++ .......+.++..|+|+|||+|..+..+.+.+.......+.+++|||..++.. . ...+.+.
T Consensus 54 Yptr~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~ 133 (319)
T TIGR03439 54 YLTNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVR 133 (319)
T ss_pred CChHHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeE
Confidence 44555444443 11222236778899999999999999999887532123579999999988654 1 2223444
Q ss_pred E--EEeeecCC
Q 038391 91 T--VSADVINL 99 (186)
Q Consensus 91 ~--~~~d~~~~ 99 (186)
+ +.+|+.+.
T Consensus 134 v~~l~gdy~~~ 144 (319)
T TIGR03439 134 CAGLLGTYDDG 144 (319)
T ss_pred EEEEEecHHHH
Confidence 4 67877653
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00012 Score=64.03 Aligned_cols=124 Identities=19% Similarity=0.170 Sum_probs=84.1
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCC----------------------------C-------eEE
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG----------------------------G-------SVV 71 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~----------------------------~-------~v~ 71 (186)
|...+......+++..++|--||+|.+.+..+....+--|| . .++
T Consensus 179 LAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~ 258 (381)
T COG0116 179 LAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY 258 (381)
T ss_pred HHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence 55555555556778899999999999999998874210000 1 378
Q ss_pred EEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHH
Q 038391 72 GIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAV 144 (186)
Q Consensus 72 gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~ 144 (186)
|+|+++.+++. +.....++|.++|+..+..+ -+.+|+||||+| -|....+...-..+-..+-
T Consensus 259 G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~--------~~~~gvvI~NPP---YGeRlg~~~~v~~LY~~fg 327 (381)
T COG0116 259 GSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP--------LEEYGVVISNPP---YGERLGSEALVAKLYREFG 327 (381)
T ss_pred EecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC--------CCcCCEEEeCCC---cchhcCChhhHHHHHHHHH
Confidence 99999999765 34556799999999877532 268999999986 3444444322233555666
Q ss_pred HHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 145 DLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
..+.+ .++.-+.+|+..
T Consensus 328 ~~lk~------------------~~~~ws~~v~tt 344 (381)
T COG0116 328 RTLKR------------------LLAGWSRYVFTT 344 (381)
T ss_pred HHHHH------------------HhcCCceEEEEc
Confidence 66655 666666666653
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.76 E-value=5.8e-05 Score=68.71 Aligned_cols=81 Identities=7% Similarity=0.146 Sum_probs=49.6
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCC----CCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLD----NGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~----~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
...+|||.|||+|.++..++..+.... -...++|+|+++..+..+ .......+...|......... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~---~ 107 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNI---E 107 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccc---c
Confidence 356899999999999999998764210 025799999999885431 111123444444332211000 0
Q ss_pred CCCCCccEEEeCCC
Q 038391 109 PKQKGFSVILSDMC 122 (186)
Q Consensus 109 ~~~~~~D~V~~d~~ 122 (186)
...++||+|++|+|
T Consensus 108 ~~~~~fD~IIgNPP 121 (524)
T TIGR02987 108 SYLDLFDIVITNPP 121 (524)
T ss_pred cccCcccEEEeCCC
Confidence 01358999999986
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00015 Score=60.71 Aligned_cols=86 Identities=17% Similarity=0.253 Sum_probs=68.2
Q ss_pred HHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCC
Q 038391 28 LQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLP 100 (186)
Q Consensus 28 ~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~ 100 (186)
+.++.....++||.+|++-|+|+|.++.++++.+++ -++++.+|+.+..-.+ +....++++.+-|+....
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~p---tGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~G 170 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAP---TGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSG 170 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCc---CcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCC
Confidence 444555555899999999999999999999999886 6999999998877433 345678999999987654
Q ss_pred hhhHhhhCCCCCCccEEEeCCC
Q 038391 101 SNQVRALSPKQKGFSVILSDMC 122 (186)
Q Consensus 101 ~~~l~~~~~~~~~~D~V~~d~~ 122 (186)
+.. ....+|.|+.|++
T Consensus 171 F~~------ks~~aDaVFLDlP 186 (314)
T KOG2915|consen 171 FLI------KSLKADAVFLDLP 186 (314)
T ss_pred ccc------cccccceEEEcCC
Confidence 321 3568999999986
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=7.7e-05 Score=62.42 Aligned_cols=90 Identities=14% Similarity=0.100 Sum_probs=66.7
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----------cCCCCCeEEEEeeecCCChhhHhhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----------LHCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----------~~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
+..++||=+|-|-|+..+.++++ ..+|+.|||+++.++. ...++|++++.. + . +.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh------~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~---~-----~~ 135 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY------DTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-L---L-----DL 135 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc------CCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-h---h-----hc
Confidence 45689999999999999999998 2499999999988643 234567777641 1 0 00
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
..++||+||+|..+ ...+.+.+.+ .|+|||.++.+
T Consensus 136 --~~~~fDVIIvDs~~----------------~~~fy~~~~~------------------~L~~~Gi~v~Q 170 (262)
T PRK00536 136 --DIKKYDLIICLQEP----------------DIHKIDGLKR------------------MLKEDGVFISV 170 (262)
T ss_pred --cCCcCCEEEEcCCC----------------ChHHHHHHHH------------------hcCCCcEEEEC
Confidence 23689999998531 1356667777 99999999985
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=97.74 E-value=1.6e-05 Score=64.50 Aligned_cols=100 Identities=14% Similarity=0.095 Sum_probs=61.2
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-----CCCC-eEEEEeeecCCChhhHhhhCCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-----CDAR-VQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-----~~~~-~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
..+.||.|||-|..|..+...+. .+|-.||..+..+..+. ...+ .++.+.-+. +|....++
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f-----~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ--------~f~P~~~~ 122 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVF-----DEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQ--------DFTPEEGK 122 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC------SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GG--------G----TT-
T ss_pred cceEEecccccchhHHHHHHHhc-----CEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHh--------hccCCCCc
Confidence 46899999999999987765432 58999999998876532 1112 233333222 33323479
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
||+|++ .|-.-+....+ ...++..+.. .|+|+|.+|||-
T Consensus 123 YDlIW~--------QW~lghLTD~d-lv~fL~RCk~------------------~L~~~G~IvvKE 161 (218)
T PF05891_consen 123 YDLIWI--------QWCLGHLTDED-LVAFLKRCKQ------------------ALKPNGVIVVKE 161 (218)
T ss_dssp EEEEEE--------ES-GGGS-HHH-HHHHHHHHHH------------------HEEEEEEEEEEE
T ss_pred EeEEEe--------hHhhccCCHHH-HHHHHHHHHH------------------hCcCCcEEEEEe
Confidence 999999 45444433334 4467777776 899999999984
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.70 E-value=6.6e-05 Score=62.53 Aligned_cols=75 Identities=15% Similarity=0.349 Sum_probs=58.0
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
+.++..|||+|+|+|.+|..+++. +.+|+++|+++.+... .....+++++.+|+........ ..+
T Consensus 28 ~~~~~~VlEiGpG~G~lT~~L~~~------~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~-----~~~ 96 (262)
T PF00398_consen 28 LSEGDTVLEIGPGPGALTRELLKR------GKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDL-----LKN 96 (262)
T ss_dssp CGTTSEEEEESSTTSCCHHHHHHH------SSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGH-----CSS
T ss_pred CCCCCEEEEeCCCCccchhhHhcc------cCcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHh-----hcC
Confidence 458899999999999999999998 4799999999988543 2246789999999988765421 134
Q ss_pred CccEEEeCCC
Q 038391 113 GFSVILSDMC 122 (186)
Q Consensus 113 ~~D~V~~d~~ 122 (186)
....|++|.+
T Consensus 97 ~~~~vv~NlP 106 (262)
T PF00398_consen 97 QPLLVVGNLP 106 (262)
T ss_dssp SEEEEEEEET
T ss_pred CceEEEEEec
Confidence 6678888764
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00016 Score=61.80 Aligned_cols=87 Identities=22% Similarity=0.319 Sum_probs=63.8
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCCh
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPS 101 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~ 101 (186)
+.+++..+. ++++..++|..+|.|+.+..+++.++ .++|+|+|.++.++..+ ....+++++++++.++..
T Consensus 9 l~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~----~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~ 83 (305)
T TIGR00006 9 LDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLG----TGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFE 83 (305)
T ss_pred HHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCC----CCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHH
Confidence 334555543 57788999999999999999999875 38999999999987542 223589999998877542
Q ss_pred hhHhhhCCCCCCccEEEeCC
Q 038391 102 NQVRALSPKQKGFSVILSDM 121 (186)
Q Consensus 102 ~~l~~~~~~~~~~D~V~~d~ 121 (186)
.+... ...++|.|+.|.
T Consensus 84 -~l~~~--~~~~vDgIl~DL 100 (305)
T TIGR00006 84 -HLDEL--LVTKIDGILVDL 100 (305)
T ss_pred -HHHhc--CCCcccEEEEec
Confidence 22222 135799999975
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00016 Score=62.49 Aligned_cols=80 Identities=26% Similarity=0.342 Sum_probs=60.3
Q ss_pred HHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC-Cc-------------C-CCCCeEEEEe
Q 038391 30 IQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP-SL-------------H-CDARVQTVSA 94 (186)
Q Consensus 30 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~-~~-------------~-~~~~~~~~~~ 94 (186)
+......+++|+.|+|--.|||.+....+.. |+.|+|-||+-.++. .+ . ...-+.++.+
T Consensus 199 i~AN~Amv~pGdivyDPFVGTGslLvsaa~F------Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~ 272 (421)
T KOG2671|consen 199 IMANQAMVKPGDIVYDPFVGTGSLLVSAAHF------GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTA 272 (421)
T ss_pred HHhhhhccCCCCEEecCccccCceeeehhhh------cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeee
Confidence 3444445799999999999999998877776 789999999998876 21 1 1223667788
Q ss_pred eecCCChhhHhhhCCCCCCccEEEeCCC
Q 038391 95 DVINLPSNQVRALSPKQKGFSVILSDMC 122 (186)
Q Consensus 95 d~~~~~~~~l~~~~~~~~~~D~V~~d~~ 122 (186)
|+++.+..+ .-.||.|+||++
T Consensus 273 D~sn~~~rs-------n~~fDaIvcDPP 293 (421)
T KOG2671|consen 273 DFSNPPLRS-------NLKFDAIVCDPP 293 (421)
T ss_pred cccCcchhh-------cceeeEEEeCCC
Confidence 888876542 358999999985
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00077 Score=57.29 Aligned_cols=86 Identities=22% Similarity=0.288 Sum_probs=64.7
Q ss_pred HHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhh
Q 038391 29 QIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQ 103 (186)
Q Consensus 29 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~ 103 (186)
|.+..+. ++++...+|..-|.|+.+..+...++. .++++|+|-++.+++.+ ....+++++++++.++...
T Consensus 14 E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~---~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~- 88 (314)
T COG0275 14 EVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPD---LGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEA- 88 (314)
T ss_pred HHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCC---CCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHH-
Confidence 3444433 678899999999999999999999875 57899999999997652 2356899999988775421
Q ss_pred HhhhCCCCCCccEEEeCC
Q 038391 104 VRALSPKQKGFSVILSDM 121 (186)
Q Consensus 104 l~~~~~~~~~~D~V~~d~ 121 (186)
+... ..+++|.|+.|.
T Consensus 89 l~~~--~i~~vDGiL~DL 104 (314)
T COG0275 89 LKEL--GIGKVDGILLDL 104 (314)
T ss_pred HHhc--CCCceeEEEEec
Confidence 2222 246899998864
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00022 Score=58.04 Aligned_cols=69 Identities=17% Similarity=0.115 Sum_probs=50.9
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
+.+++|+|+|.|.-+..++=.++ ..+|+-+|-...++.. .-.-.+++++++.+.+... ...
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p----~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~---------~~~ 134 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP----DLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ---------EKK 134 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc----CCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc---------ccc
Confidence 58999999999999999985443 4779999999988544 1223568888887655532 123
Q ss_pred -ccEEEeCC
Q 038391 114 -FSVILSDM 121 (186)
Q Consensus 114 -~D~V~~d~ 121 (186)
||+|++.+
T Consensus 135 ~~D~vtsRA 143 (215)
T COG0357 135 QYDVVTSRA 143 (215)
T ss_pred cCcEEEeeh
Confidence 99999843
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00032 Score=58.92 Aligned_cols=42 Identities=12% Similarity=0.225 Sum_probs=28.8
Q ss_pred CCEEEEEcccCCh----HHHHHHHHhCC-CCCCCeEEEEeCCCCCCC
Q 038391 40 GSSVLDLGCAPGA----WLQVACQSLGP-LDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 40 ~~~vLDlGcG~G~----~~~~l~~~~~~-~~~~~~v~gvDis~~~i~ 81 (186)
.-+|+-.||++|. ++..+.+.++. .....+|+|.||+...|+
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~ 143 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLE 143 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHH
Confidence 4589999999995 34444455531 112469999999997753
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.51 E-value=5.7e-05 Score=67.88 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=55.9
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCC---CCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEE
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVK---KVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis---~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~ 118 (186)
.+||+|||+|.|+.++.++ +..+..+-.. +..+..+.. ..+--+.+-+ ....++.+++.||+|.
T Consensus 120 ~~LDvGcG~aSF~a~l~~r------~V~t~s~a~~d~~~~qvqfale-RGvpa~~~~~------~s~rLPfp~~~fDmvH 186 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLER------NVTTMSFAPNDEHEAQVQFALE-RGVPAMIGVL------GSQRLPFPSNAFDMVH 186 (506)
T ss_pred EEEeccceeehhHHHHhhC------CceEEEcccccCCchhhhhhhh-cCcchhhhhh------ccccccCCccchhhhh
Confidence 6899999999999999997 3444443322 112211111 1111111111 1134445789999999
Q ss_pred eCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 119 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
|.-+ .-.|..+ ....+.+..| +|||||+++++..
T Consensus 187 csrc---~i~W~~~-------~g~~l~evdR------------------vLRpGGyfv~S~p 220 (506)
T PF03141_consen 187 CSRC---LIPWHPN-------DGFLLFEVDR------------------VLRPGGYFVLSGP 220 (506)
T ss_pred cccc---cccchhc-------ccceeehhhh------------------hhccCceEEecCC
Confidence 9543 1223222 1235566677 9999999998754
|
; GO: 0008168 methyltransferase activity |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00016 Score=65.20 Aligned_cols=68 Identities=13% Similarity=0.246 Sum_probs=54.6
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINL 99 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~ 99 (186)
+|...+.....++.++.+||++||+|.++..+++.+ .+|+||++++..++.+ +...+.+|+++-+.++
T Consensus 370 vLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~------~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 370 VLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV------KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDL 443 (534)
T ss_pred HHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc------cceeeeecChhhcchhhhcchhcCccceeeeecchhhc
Confidence 456666666667889999999999999999999985 7999999999998652 3446889998855443
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00058 Score=48.15 Aligned_cols=99 Identities=31% Similarity=0.489 Sum_probs=61.3
Q ss_pred EEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC----CCC--eEEEEeeecC--CChhhHhhhCCCC-CC
Q 038391 43 VLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC----DAR--VQTVSADVIN--LPSNQVRALSPKQ-KG 113 (186)
Q Consensus 43 vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~----~~~--~~~~~~d~~~--~~~~~l~~~~~~~-~~ 113 (186)
++|+|||+|..+ .+...... +..++|+|+++.++..... ... +.+...+... .+. .. ..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 119 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGR---GAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPF--------EDSAS 119 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCC---CceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCC--------CCCCc
Confidence 999999999988 44444321 2489999999988654111 111 4666666554 221 12 47
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
||++.. .. ..+... ....+....+ .|+|+|.+++......
T Consensus 120 ~d~~~~-~~----~~~~~~-------~~~~~~~~~~------------------~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 120 FDLVIS-LL----VLHLLP-------PAKALRELLR------------------VLKPGGRLVLSDLLRD 159 (257)
T ss_pred eeEEee-ee----ehhcCC-------HHHHHHHHHH------------------hcCCCcEEEEEeccCC
Confidence 999933 21 111111 3456666776 8999999998876543
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00036 Score=59.82 Aligned_cols=108 Identities=23% Similarity=0.304 Sum_probs=69.8
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCC-CCeEEEEeeecCCChhhHhhhC---CC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCD-ARVQTVSADVINLPSNQVRALS---PK 110 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~-~~~~~~~~d~~~~~~~~l~~~~---~~ 110 (186)
.+++|.+||-+|||| |..+...++.++. .+|+.+|+.+.+++.++.. .....-..... ..+.+.+.. ..
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA----~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~--~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGA----SDVVITDLVANRLELAKKFGATVTDPSSHKS--SPQELAELVEKALG 239 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCC----CcEEEeecCHHHHHHHHHhCCeEEeeccccc--cHHHHHHHHHhhcc
Confidence 368899999999998 8888888999864 7999999999998775432 22211111111 122222221 11
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
...+|+.+. ++|. +..++.+.. .||+||++++..+-.+.
T Consensus 240 ~~~~d~~~d-----CsG~------------~~~~~aai~------------------a~r~gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 240 KKQPDVTFD-----CSGA------------EVTIRAAIK------------------ATRSGGTVVLVGMGAEE 278 (354)
T ss_pred ccCCCeEEE-----ccCc------------hHHHHHHHH------------------HhccCCEEEEeccCCCc
Confidence 245898886 3442 234444555 78999998888776554
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00048 Score=60.12 Aligned_cols=107 Identities=21% Similarity=0.249 Sum_probs=75.5
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------------cCCCCCeEEEEeeecCCChhh
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------------LHCDARVQTVSADVINLPSNQ 103 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------------~~~~~~~~~~~~d~~~~~~~~ 103 (186)
++...+||-+|-|-|--.+.+.+.-+ -.+++-||++|+|++. +..++|++.+..|+.+.-..
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellkyP~----~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~- 361 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKYPQ----VEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT- 361 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhCCC----cceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh-
Confidence 45568999999999999999988632 3699999999999754 22457888888877654222
Q ss_pred HhhhCCCCCCccEEEeCCC-CCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 104 VRALSPKQKGFSVILSDMC-PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 104 l~~~~~~~~~~D~V~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
..+.||.||.|.+ |+....... -..++...+.+ .|+++|.+|++-
T Consensus 362 ------a~~~fD~vIVDl~DP~tps~~rl-------YS~eFY~ll~~------------------~l~e~Gl~VvQa 407 (508)
T COG4262 362 ------AADMFDVVIVDLPDPSTPSIGRL-------YSVEFYRLLSR------------------HLAETGLMVVQA 407 (508)
T ss_pred ------hcccccEEEEeCCCCCCcchhhh-------hhHHHHHHHHH------------------hcCcCceEEEec
Confidence 2569999999864 211111111 13356666676 899999999873
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00035 Score=56.47 Aligned_cols=85 Identities=18% Similarity=0.244 Sum_probs=48.3
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC---------------cCCCCCeEE
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS---------------LHCDARVQT 91 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~---------------~~~~~~~~~ 91 (186)
+..++.... ++++...+|||||.|.....++...+- .+++|||+.+..... .....++.+
T Consensus 31 ~~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~----~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l 105 (205)
T PF08123_consen 31 VSKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGC----KKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVEL 105 (205)
T ss_dssp HHHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH------SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEE
T ss_pred HHHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCC----cEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccccee
Confidence 344455544 678899999999999998888877632 469999999976211 112356778
Q ss_pred EEeeecCCChhhHhhhCCCCCCccEEEeCC
Q 038391 92 VSADVINLPSNQVRALSPKQKGFSVILSDM 121 (186)
Q Consensus 92 ~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~ 121 (186)
.++|+.+... ...+ -...|+|++|-
T Consensus 106 ~~gdfl~~~~--~~~~---~s~AdvVf~Nn 130 (205)
T PF08123_consen 106 IHGDFLDPDF--VKDI---WSDADVVFVNN 130 (205)
T ss_dssp ECS-TTTHHH--HHHH---GHC-SEEEE--
T ss_pred eccCccccHh--Hhhh---hcCCCEEEEec
Confidence 8888775432 1111 13689999963
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00033 Score=52.96 Aligned_cols=45 Identities=29% Similarity=0.305 Sum_probs=36.9
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.+...|+|+|||.|+++..++..+++...+.+|+|||.++..+..
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~ 68 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVES 68 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHH
Confidence 567799999999999999999955433346899999999988644
|
|
| >KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0005 Score=62.43 Aligned_cols=152 Identities=18% Similarity=0.229 Sum_probs=96.2
Q ss_pred ChHHHHHHhhchhhhhHHhHHHHHHHcCCC------CCCCE-----------EEEEcccCChHHHHHHHHhCCCCCCCeE
Q 038391 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLI------KPGSS-----------VLDLGCAPGAWLQVACQSLGPLDNGGSV 70 (186)
Q Consensus 8 ~~~~~~~~~~~y~~r~~~~l~~~~~~~~~~------~~~~~-----------vLDlGcG~G~~~~~l~~~~~~~~~~~~v 70 (186)
++|.-+ +-..|.+|++.|..++...+.++ +-|.. ..|+|+|||+++.++..+-. +.++-
T Consensus 220 NPyEtI-rs~fFlNRAAmKmANmD~i~d~mftNpRdp~g~~lva~~~~eLlYFaDvCAGPGGFSEYvLwRK~---w~AKG 295 (845)
T KOG3673|consen 220 NPYETI-RSAFFLNRAAMKMANMDKIYDWMFTNPRDPLGESLVAENVEELLYFADVCAGPGGFSEYVLWRKF---WNAKG 295 (845)
T ss_pred ChHHHH-HHHHHhhHHHHHhhhHHHHHHHHhCCCCCcccCccccccHHHHHHHHhhhcCCCccchhhhhhhh---hcccc
Confidence 555333 34557889999888877776654 11222 13799999999999986522 13444
Q ss_pred EEEeCCCCC---CCC---c-CC-CC--CeEEEEeeecCCCh-hhHhhhC---CCCCCccEEEeCCCCCCCCCcccchHHH
Q 038391 71 VGIDVKKVK---VPS---L-HC-DA--RVQTVSADVINLPS-NQVRALS---PKQKGFSVILSDMCPSVSGITTKDAALS 136 (186)
Q Consensus 71 ~gvDis~~~---i~~---~-~~-~~--~~~~~~~d~~~~~~-~~l~~~~---~~~~~~D~V~~d~~~~~~~~~~~~~~~~ 136 (186)
+|+-+.-.. ++. + .. .. .-.--.+|+.++.. ..+.++. .++..+.+..+|+.++..|..++....+
T Consensus 296 FGfTL~G~nDFKLekF~aaS~e~FetfYG~k~dGdi~dp~Nidsl~~~i~~~T~~~GVHf~MADGGFSVEGQeNiQEILS 375 (845)
T KOG3673|consen 296 FGFTLAGKNDFKLEKFTAASQEFFETFYGTKDDGDIMDPVNIDSLEAHISRGTSGLGVHFMMADGGFSVEGQENIQEILS 375 (845)
T ss_pred ceeEeccCCccchhhhhhcCHHhhhccccccCCCCcCCccchHHHHHHHhcCCCCcceEEEEecCCccccchhhHHHHHH
Confidence 554433221 221 0 00 00 00001234444321 1222221 2345788899999999999999999999
Q ss_pred HHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 137 VELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
.++..+-+..+.. ++++||.+++|+|.
T Consensus 376 KqLyLCQfL~aL~------------------IvR~gG~F~CK~FD 402 (845)
T KOG3673|consen 376 KQLYLCQFLVALC------------------IVREGGNFFCKLFD 402 (845)
T ss_pred HHHHHHHHHHHhe------------------eeecCCeEEEeeec
Confidence 9999988888888 99999999999985
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00082 Score=54.62 Aligned_cols=128 Identities=18% Similarity=0.140 Sum_probs=76.0
Q ss_pred CCChHHHHHHhhchhhh---hHHhHHHHHHHcCCCCCC----CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCC
Q 038391 6 APDFFYREAQRLGYVAR---SAFKLLQIQKQYKLIKPG----SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKV 78 (186)
Q Consensus 6 ~~~~~~~~~~~~~y~~r---~~~~l~~~~~~~~~~~~~----~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~ 78 (186)
-.+.|..++....-..| +...+++.+.....-.+. -++||+||=+......-... -.|+.||+.+.
T Consensus 11 Gl~~YQ~AS~~Gq~~~RGGdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~-------fdvt~IDLns~ 83 (219)
T PF11968_consen 11 GLEAYQRASKQGQSKDRGGDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGW-------FDVTRIDLNSQ 83 (219)
T ss_pred CHHHHHHHHHhcCCCCCCCchhHHHHHHhhhhccccccccccceEEeecccCCCCcccccCc-------eeeEEeecCCC
Confidence 34567666665444444 444566655554432222 48999999765544333333 47999999984
Q ss_pred CCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCC
Q 038391 79 KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVN 158 (186)
Q Consensus 79 ~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (186)
- -.+.+.|+.+.+.+.- +.++||+|.+.. .....+++.. .-..+..+.+
T Consensus 84 ~---------~~I~qqDFm~rplp~~-----~~e~FdvIs~SL----VLNfVP~p~~----RG~Ml~r~~~--------- 132 (219)
T PF11968_consen 84 H---------PGILQQDFMERPLPKN-----ESEKFDVISLSL----VLNFVPDPKQ----RGEMLRRAHK--------- 132 (219)
T ss_pred C---------CCceeeccccCCCCCC-----cccceeEEEEEE----EEeeCCCHHH----HHHHHHHHHH---------
Confidence 4 3355677776543211 367999998843 1222333322 3345555555
Q ss_pred CCCCCCCCcccccCcE-----EEEEEc
Q 038391 159 NSDSSTDSGVLKPGGH-----LVIKLL 180 (186)
Q Consensus 159 ~~~~~~~~~~LkpgG~-----lvi~~~ 180 (186)
+|+|+|. |+|.+-
T Consensus 133 ---------fL~~~g~~~~~~LFlVlP 150 (219)
T PF11968_consen 133 ---------FLKPPGLSLFPSLFLVLP 150 (219)
T ss_pred ---------HhCCCCccCcceEEEEeC
Confidence 9999999 777653
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00025 Score=56.71 Aligned_cols=65 Identities=20% Similarity=0.311 Sum_probs=50.4
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCCCCCc
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~ 114 (186)
..+.|+|+|+|.++...+.. .-+|++|+..|..... -....+++.+.+|++...+ ...
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~------A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f----------e~A 97 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA------AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF----------ENA 97 (252)
T ss_pred hceeeccCCcchHHHHHHhh------hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc----------ccc
Confidence 58999999999888777776 3699999999976322 1234689999999987754 367
Q ss_pred cEEEeCC
Q 038391 115 SVILSDM 121 (186)
Q Consensus 115 D~V~~d~ 121 (186)
|+|+|-|
T Consensus 98 DvvicEm 104 (252)
T COG4076 98 DVVICEM 104 (252)
T ss_pred ceeHHHH
Confidence 9999965
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00018 Score=54.77 Aligned_cols=90 Identities=19% Similarity=0.261 Sum_probs=55.4
Q ss_pred eEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHH
Q 038391 69 SVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGM 141 (186)
Q Consensus 69 ~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~ 141 (186)
+|+|+||+++++.. .....++++++..-.++. +.. +.+++|.++.|...-..|.+.+ ....+-..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~-----~~i-~~~~v~~~iFNLGYLPggDk~i--~T~~~TTl 72 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLD-----EYI-PEGPVDAAIFNLGYLPGGDKSI--TTKPETTL 72 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGG-----GT---S--EEEEEEEESB-CTS-TTS--B--HHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHH-----hhC-ccCCcCEEEEECCcCCCCCCCC--CcCcHHHH
Confidence 69999999999754 334457888877554433 222 2258999999876545555443 23344466
Q ss_pred HHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 142 RAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
.+++.+.. +|+|||.++|.++.|-+
T Consensus 73 ~Al~~al~------------------lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 73 KALEAALE------------------LLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HHHHHHHH------------------HEEEEEEEEEEE--STC
T ss_pred HHHHHHHH------------------hhccCCEEEEEEeCCCC
Confidence 77777777 99999999999998743
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00036 Score=57.90 Aligned_cols=75 Identities=19% Similarity=0.112 Sum_probs=55.0
Q ss_pred CCCCC--EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------c------CC--CCCeEEEEeeecCC
Q 038391 37 IKPGS--SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------L------HC--DARVQTVSADVINL 99 (186)
Q Consensus 37 ~~~~~--~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~------~~--~~~~~~~~~d~~~~ 99 (186)
+++|. +|||+.+|.|..+..++.+ |++|+++|-++..... . .. ..+++++++|....
T Consensus 84 lk~g~~p~VLD~TAGlG~Da~~las~------G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~ 157 (250)
T PRK10742 84 IKGDYLPDVVDATAGLGRDAFVLASV------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA 157 (250)
T ss_pred CCCCCCCEEEECCCCccHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHH
Confidence 57777 8999999999999999998 6789999999977211 1 11 14677777776543
Q ss_pred ChhhHhhhCCCCCCccEEEeCCCCC
Q 038391 100 PSNQVRALSPKQKGFSVILSDMCPS 124 (186)
Q Consensus 100 ~~~~l~~~~~~~~~~D~V~~d~~~~ 124 (186)
+... ..+||+|+.|++++
T Consensus 158 ----L~~~---~~~fDVVYlDPMfp 175 (250)
T PRK10742 158 ----LTDI---TPRPQVVYLDPMFP 175 (250)
T ss_pred ----HhhC---CCCCcEEEECCCCC
Confidence 2221 34799999998643
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0011 Score=53.23 Aligned_cols=43 Identities=26% Similarity=0.474 Sum_probs=36.7
Q ss_pred cCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC
Q 038391 34 YKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK 79 (186)
Q Consensus 34 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~ 79 (186)
|..+++|.+|+|+=.|.|+||..++..+++ .+.|+++=..+..
T Consensus 43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp---~G~Vy~~~p~e~~ 85 (238)
T COG4798 43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGP---KGKVYAYVPAELT 85 (238)
T ss_pred EeccCCCCEEEEEecCCccHhhhhchhcCC---ceeEEEecchhhc
Confidence 445799999999999999999999999987 6799998665553
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0013 Score=55.34 Aligned_cols=36 Identities=19% Similarity=0.137 Sum_probs=32.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK 79 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~ 79 (186)
+...+||--|||-|.++..++.+ |-.|.|.|.|-.|
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~------G~~~~gnE~S~~M 90 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL------GYAVQGNEFSYFM 90 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc------cceEEEEEchHHH
Confidence 33568999999999999999998 6799999999977
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0016 Score=54.81 Aligned_cols=52 Identities=25% Similarity=0.303 Sum_probs=38.5
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
|.|+......++| .+|||+|||+|.-+..+.+.++. -.+++++|.|+.|+..
T Consensus 22 l~El~~r~p~f~P-~~vLD~GsGpGta~wAa~~~~~~---~~~~~~vd~s~~~~~l 73 (274)
T PF09243_consen 22 LSELRKRLPDFRP-RSVLDFGSGPGTALWAAREVWPS---LKEYTCVDRSPEMLEL 73 (274)
T ss_pred HHHHHHhCcCCCC-ceEEEecCChHHHHHHHHHHhcC---ceeeeeecCCHHHHHH
Confidence 4445444433333 48999999999888888888763 4689999999999653
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00049 Score=56.17 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=54.1
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
....|+|..||.|+.++.++.+ +..|++||++|..|.- ..-..+++|+++|+.++... + .+ ..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~------~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~-l-q~--~K 163 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ------GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASK-L-KA--DK 163 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh------CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHH-H-hh--hh
Confidence 4568999999999999999988 5799999999988643 22345999999998765321 1 00 13
Q ss_pred CCccEEEeCCCC
Q 038391 112 KGFSVILSDMCP 123 (186)
Q Consensus 112 ~~~D~V~~d~~~ 123 (186)
..+|+|+..+++
T Consensus 164 ~~~~~vf~sppw 175 (263)
T KOG2730|consen 164 IKYDCVFLSPPW 175 (263)
T ss_pred heeeeeecCCCC
Confidence 356677765543
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0019 Score=54.19 Aligned_cols=114 Identities=23% Similarity=0.231 Sum_probs=63.9
Q ss_pred CEEEEEccc--CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----CCCC--CeEEEEeeecCCC----hhhHhhhC
Q 038391 41 SSVLDLGCA--PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----HCDA--RVQTVSADVINLP----SNQVRALS 108 (186)
Q Consensus 41 ~~vLDlGcG--~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----~~~~--~~~~~~~d~~~~~----~~~l~~~~ 108 (186)
.+.|||||| +-..+-.+++...+ .++|+-+|+.|..+... .... +..++++|+.+.. ...+.++.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P---~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~l 146 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAP---DARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLL 146 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-T---T-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC-
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCC---CceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcC
Confidence 689999999 34567778887654 79999999999775431 1223 4889999998753 12344455
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
..++.+-+++.. ..++..+... ....+..... .|.||.+|+|+++..+.
T Consensus 147 D~~rPVavll~~-----vLh~v~D~~d----p~~iv~~l~d------------------~lapGS~L~ish~t~d~ 195 (267)
T PF04672_consen 147 DFDRPVAVLLVA-----VLHFVPDDDD----PAGIVARLRD------------------ALAPGSYLAISHATDDG 195 (267)
T ss_dssp -TTS--EEEECT------GGGS-CGCT----HHHHHHHHHC------------------CS-TT-EEEEEEEB-TT
T ss_pred CCCCCeeeeeee-----eeccCCCccC----HHHHHHHHHH------------------hCCCCceEEEEecCCCC
Confidence 556667677662 2233333222 4456666666 89999999999998764
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0047 Score=52.09 Aligned_cols=103 Identities=23% Similarity=0.344 Sum_probs=54.9
Q ss_pred CEEEEEcccCChHH-HHHHHHhCCCCCCCeEEEEeCCCCCCCC--------cCCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 41 SSVLDLGCAPGAWL-QVACQSLGPLDNGGSVVGIDVKKVKVPS--------LHCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 41 ~~vLDlGcG~G~~~-~~l~~~~~~~~~~~~v~gvDis~~~i~~--------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.+|+=+||||==+| +.+++..+. +..|+++|+++..+.. .....+++|+.+|..+.... -
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~---~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d--------l 190 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGP---GARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD--------L 190 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT-----EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG---------
T ss_pred ceEEEEcCCCcchHHHHHHHHhCC---CCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc--------c
Confidence 59999999996555 455555433 5789999999988543 13467899999998765432 2
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
..||+|+... ...++.+. ....+....+ .++||..+++..-+|
T Consensus 191 ~~~DvV~lAa------lVg~~~e~----K~~Il~~l~~------------------~m~~ga~l~~Rsa~G 233 (276)
T PF03059_consen 191 KEYDVVFLAA------LVGMDAEP----KEEILEHLAK------------------HMAPGARLVVRSAHG 233 (276)
T ss_dssp ---SEEEE-T------T-S----S----HHHHHHHHHH------------------HS-TTSEEEEEE--G
T ss_pred ccCCEEEEhh------hcccccch----HHHHHHHHHh------------------hCCCCcEEEEecchh
Confidence 5899998732 33333222 4455666655 788999988875443
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0022 Score=55.62 Aligned_cols=108 Identities=22% Similarity=0.383 Sum_probs=68.3
Q ss_pred CCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCcc
Q 038391 37 IKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFS 115 (186)
Q Consensus 37 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D 115 (186)
.+++.+|+-+|||+ |.++..+++.++. .+|+.+|.++.+++.+........+...-.+.....+.... .+..+|
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga----~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t-~g~g~D 240 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGA----SVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELT-GGRGAD 240 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC----ceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHh-CCCCCC
Confidence 34555999999999 7777888888754 79999999999987653311111111111101111122222 245799
Q ss_pred EEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 116 VILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 116 ~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
+++- +.| . ..++..+.+ .++|||++++.-+.+.+
T Consensus 241 ~vie-----~~G--~----------~~~~~~ai~------------------~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 241 VVIE-----AVG--S----------PPALDQALE------------------ALRPGGTVVVVGVYGGE 274 (350)
T ss_pred EEEE-----CCC--C----------HHHHHHHHH------------------HhcCCCEEEEEeccCCc
Confidence 9987 344 1 135666666 89999999988877654
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.003 Score=53.05 Aligned_cols=87 Identities=23% Similarity=0.383 Sum_probs=65.1
Q ss_pred hhhhHHhHHHHHHHcCC-------CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEE
Q 038391 20 VARSAFKLLQIQKQYKL-------IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTV 92 (186)
Q Consensus 20 ~~r~~~~l~~~~~~~~~-------~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~ 92 (186)
-+|+..||.|....|.. +.+|...+|+|+.||+||-.+.++ +..|++||.-+-. +.-.....++-.
T Consensus 185 PSRStLKLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr------~m~V~aVDng~ma-~sL~dtg~v~h~ 257 (358)
T COG2933 185 PSRSTLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKR------NMRVYAVDNGPMA-QSLMDTGQVTHL 257 (358)
T ss_pred CchhhhhHHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhc------ceEEEEeccchhh-hhhhcccceeee
Confidence 47888888887766543 477889999999999999999998 6899999976644 222333456666
Q ss_pred EeeecCCChhhHhhhCCCCCCccEEEeCC
Q 038391 93 SADVINLPSNQVRALSPKQKGFSVILSDM 121 (186)
Q Consensus 93 ~~d~~~~~~~~l~~~~~~~~~~D~V~~d~ 121 (186)
..|-....+. ...+|..+|||
T Consensus 258 r~DGfk~~P~--------r~~idWmVCDm 278 (358)
T COG2933 258 REDGFKFRPT--------RSNIDWMVCDM 278 (358)
T ss_pred eccCcccccC--------CCCCceEEeeh
Confidence 6776555421 46899999998
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.00052 Score=60.00 Aligned_cols=104 Identities=25% Similarity=0.239 Sum_probs=74.6
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
..+++..++|+|||-|....++...- +..++|+|.++..+.. ........+...|+-..++
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~-----~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~f------- 174 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFK-----KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPF------- 174 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhc-----cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCC-------
Confidence 35778899999999999999999873 5799999999977533 1222334445566655543
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
.++.||.+.+.- .+.+..+ ...+..+..+ ++||||.++++.|.
T Consensus 175 -edn~fd~v~~ld----~~~~~~~-------~~~~y~Ei~r------------------v~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 175 -EDNTFDGVRFLE----VVCHAPD-------LEKVYAEIYR------------------VLKPGGLFIVKEWI 217 (364)
T ss_pred -CccccCcEEEEe----ecccCCc-------HHHHHHHHhc------------------ccCCCceEEeHHHH
Confidence 367899986632 2334444 5678889998 99999999987654
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0012 Score=49.17 Aligned_cols=53 Identities=19% Similarity=0.137 Sum_probs=39.7
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecC
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVIN 98 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~ 98 (186)
.+||+|||.|.++..+++..+ +.+|+++|.++.+... .+...++++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~----~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA----EGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC----CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999998753 4699999999988543 1112357777766654
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.004 Score=56.49 Aligned_cols=90 Identities=14% Similarity=0.209 Sum_probs=53.6
Q ss_pred HHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhH
Q 038391 32 KQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQV 104 (186)
Q Consensus 32 ~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l 104 (186)
.+.....+..+|+|.+||+|++.....+.++..+....++|.|+.+..... +.....+....+|-..-+...
T Consensus 179 v~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~- 257 (489)
T COG0286 179 VELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHD- 257 (489)
T ss_pred HHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCccc-
Confidence 333334677799999999999999999888642112679999998866322 111112233333322211100
Q ss_pred hhhCCCCCCccEEEeCCCCC
Q 038391 105 RALSPKQKGFSVILSDMCPS 124 (186)
Q Consensus 105 ~~~~~~~~~~D~V~~d~~~~ 124 (186)
. ....+.||.|++|++.+
T Consensus 258 -~-~~~~~~~D~viaNPPf~ 275 (489)
T COG0286 258 -D-KDDKGKFDFVIANPPFS 275 (489)
T ss_pred -c-cCCccceeEEEeCCCCC
Confidence 0 01236799999998755
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0047 Score=53.40 Aligned_cols=105 Identities=18% Similarity=0.146 Sum_probs=70.9
Q ss_pred HHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-cCCC-CCeEEEEeeecCCChhhHhhhCC
Q 038391 32 KQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-LHCD-ARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 32 ~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-~~~~-~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
..+..++.-...+|+|.|.|..+..+...+ .+|-++++....+.. +... ..+..+-+|+....
T Consensus 170 ~~~~Gf~~v~~avDvGgGiG~v~k~ll~~f------p~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~--------- 234 (342)
T KOG3178|consen 170 EVYTGFKGVNVAVDVGGGIGRVLKNLLSKY------PHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDT--------- 234 (342)
T ss_pred hhhcccccCceEEEcCCcHhHHHHHHHHhC------CCCceeecCHHHHHhhhhhhcCCcceecccccccC---------
Confidence 333334445789999999999999999976 458888887766543 2222 55788888876432
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
| +-|+|+.-. +.+.|.- +-+...++.+++ .|+|||.++++--
T Consensus 235 P--~~daI~mkW---iLhdwtD------edcvkiLknC~~------------------sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 235 P--KGDAIWMKW---ILHDWTD------EDCVKILKNCKK------------------SLPPGGKIIVVEN 276 (342)
T ss_pred C--CcCeEEEEe---ecccCCh------HHHHHHHHHHHH------------------hCCCCCEEEEEec
Confidence 1 346887722 2223322 236688888888 9999999998754
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0027 Score=54.35 Aligned_cols=88 Identities=22% Similarity=0.309 Sum_probs=57.7
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCCh
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPS 101 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~ 101 (186)
+-|.+..+. ++++...+|..-|.|+.+..+.+.++ .++|+|+|-++.++.. .....++.++++++.++..
T Consensus 9 l~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~----~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~ 83 (310)
T PF01795_consen 9 LKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLP----NGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDE 83 (310)
T ss_dssp HHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-T----T-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHH
T ss_pred HHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCC----CCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHH
Confidence 334445444 67788999999999999999999986 3899999999999743 2235789999999987643
Q ss_pred hhHhhhCCCCCCccEEEeCC
Q 038391 102 NQVRALSPKQKGFSVILSDM 121 (186)
Q Consensus 102 ~~l~~~~~~~~~~D~V~~d~ 121 (186)
. +.... ...++|.|+.|.
T Consensus 84 ~-l~~~~-~~~~~dgiL~DL 101 (310)
T PF01795_consen 84 Y-LKELN-GINKVDGILFDL 101 (310)
T ss_dssp H-HHHTT-TTS-EEEEEEE-
T ss_pred H-HHHcc-CCCccCEEEEcc
Confidence 2 22221 236899999975
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0072 Score=52.40 Aligned_cols=98 Identities=20% Similarity=0.272 Sum_probs=63.2
Q ss_pred CCCCCEEEEEccc-CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCcc
Q 038391 37 IKPGSSVLDLGCA-PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFS 115 (186)
Q Consensus 37 ~~~~~~vLDlGcG-~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D 115 (186)
++||++|+-+|+| .|..+..+++.+ +.+|+++|.++...+.+.....-.++... .......+ .+.||
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~-----ga~Via~~~~~~K~e~a~~lGAd~~i~~~-~~~~~~~~------~~~~d 231 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAM-----GAEVIAITRSEEKLELAKKLGADHVINSS-DSDALEAV------KEIAD 231 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-----CCeEEEEeCChHHHHHHHHhCCcEEEEcC-CchhhHHh------HhhCc
Confidence 6889999999888 245666777766 58999999999987654333333344332 11111111 22499
Q ss_pred EEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 116 VILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 116 ~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
+|+.- .+ . ..+....+ .||+||++++.-+.+
T Consensus 232 ~ii~t-----v~----~---------~~~~~~l~------------------~l~~~G~~v~vG~~~ 262 (339)
T COG1064 232 AIIDT-----VG----P---------ATLEPSLK------------------ALRRGGTLVLVGLPG 262 (339)
T ss_pred EEEEC-----CC----h---------hhHHHHHH------------------HHhcCCEEEEECCCC
Confidence 99872 12 1 24444555 899999999988774
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0075 Score=48.51 Aligned_cols=67 Identities=24% Similarity=0.343 Sum_probs=47.7
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.-.|++|||+|+|+|.-++..+.. +...|+..|+.+..+.. ..+.-.+.+...|+.. + .
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~a-----GA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-~----------~ 140 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARA-----GAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-S----------P 140 (218)
T ss_pred ccccceeeecccccChHHHHHHHh-----hhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-C----------C
Confidence 344899999999999877777765 24689999999876443 2233456666666543 1 4
Q ss_pred CCccEEEe
Q 038391 112 KGFSVILS 119 (186)
Q Consensus 112 ~~~D~V~~ 119 (186)
..||++++
T Consensus 141 ~~~Dl~La 148 (218)
T COG3897 141 PAFDLLLA 148 (218)
T ss_pred cceeEEEe
Confidence 58999987
|
|
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0048 Score=54.05 Aligned_cols=85 Identities=22% Similarity=0.354 Sum_probs=63.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCC-hhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLP-SNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~-~~~l~~~~~~ 110 (186)
.+|.+|+|.||.+|..|++++..+.+ .++++|+|.++..... ......+..+.+|+.+.. +..
T Consensus 212 ~~g~~v~d~caapg~KTsH~a~i~~n---~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~------- 281 (413)
T KOG2360|consen 212 RPGSRVIDTCAAPGNKTSHLAAIMRN---QGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEK------- 281 (413)
T ss_pred CCCCceeeeccccccchhhHHHHhhc---cCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCccc-------
Confidence 66899999999999999999999986 6899999999987432 112223444467777642 111
Q ss_pred CCCccEEEeCCCCCCCCCcccc
Q 038391 111 QKGFSVILSDMCPSVSGITTKD 132 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~ 132 (186)
=..+-.|++|.+|+.+|++...
T Consensus 282 ~~~v~~iL~DpscSgSgm~~r~ 303 (413)
T KOG2360|consen 282 FRDVTYILVDPSCSGSGMVSRQ 303 (413)
T ss_pred ccceeEEEeCCCCCCCccccce
Confidence 2467789999999999887553
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.0088 Score=50.21 Aligned_cols=71 Identities=11% Similarity=0.135 Sum_probs=49.3
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-CCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeC
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-CDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d 120 (186)
+++|+.||.|+++..+.+. + -..|+++|+++..++... .... ..+.+|+.+.....+ ...+|+++.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G----~~~v~a~e~~~~a~~~~~~N~~~-~~~~~Di~~~~~~~~------~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-G----FEIVAANEIDKSAAETYEANFPN-KLIEGDITKIDEKDF------IPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHc-C----CEEEEEEeCCHHHHHHHHHhCCC-CCccCccccCchhhc------CCCCCEEEeC
Confidence 6899999999999888775 1 236899999998865421 1112 256678776653321 2479999998
Q ss_pred CCCC
Q 038391 121 MCPS 124 (186)
Q Consensus 121 ~~~~ 124 (186)
.+|.
T Consensus 70 pPCq 73 (275)
T cd00315 70 FPCQ 73 (275)
T ss_pred CCCh
Confidence 8764
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.014 Score=49.80 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=40.4
Q ss_pred CCEEEEEcccCChH-HHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------c-CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 40 GSSVLDLGCAPGAW-LQVACQSLGPLDNGGSVVGIDVKKVKVPS-------L-HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 40 ~~~vLDlGcG~G~~-~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~-~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
.-++||+|||.-.+ .+.-++.+ +.+++|.||++..++. + .+..++++++..-...- +......
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-----~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i---~~~i~~~ 174 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-----GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNI---FDGIIQP 174 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH-------EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SS---TTTSTT-
T ss_pred ceEeecCCccHHHHHHHHhhhhc-----CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCcccc---chhhhcc
Confidence 45899999998755 45555554 4799999999988643 3 56678888765322111 1122223
Q ss_pred CCCccEEEeCCCC
Q 038391 111 QKGFSVILSDMCP 123 (186)
Q Consensus 111 ~~~~D~V~~d~~~ 123 (186)
.+.||+..||+++
T Consensus 175 ~e~~dftmCNPPF 187 (299)
T PF05971_consen 175 NERFDFTMCNPPF 187 (299)
T ss_dssp -S-EEEEEE----
T ss_pred cceeeEEecCCcc
Confidence 5689999999864
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.0056 Score=53.32 Aligned_cols=49 Identities=27% Similarity=0.280 Sum_probs=32.6
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK 79 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~ 79 (186)
|-++...-..+.+. +|||+|.|||.-...+-+.++. =.+++.++.|+..
T Consensus 102 L~~L~~~~~dfapq-siLDvG~GPgtgl~A~n~i~Pd---l~sa~ile~sp~l 150 (484)
T COG5459 102 LDELQKRVPDFAPQ-SILDVGAGPGTGLWALNDIWPD---LKSAVILEASPAL 150 (484)
T ss_pred HHHHHHhCCCcCcc-hhhccCCCCchhhhhhcccCCC---chhhhhhccCHHH
Confidence 44455544444444 6999999999877777777754 2467777777654
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.0016 Score=54.32 Aligned_cols=111 Identities=23% Similarity=0.338 Sum_probs=58.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC-------C------------------cC---------
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP-------S------------------LH--------- 84 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~-------~------------------~~--------- 84 (186)
+|.++||+||||-.+-..-+..+ -.+++..|+++.... . ..
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~-----f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~ 130 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEW-----FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEK 130 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGT-----EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHh-----hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHH
Confidence 46799999999965533333222 147999999985521 0 00
Q ss_pred CCCCeE-EEEeeecCCChhhHhh-hCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCC
Q 038391 85 CDARVQ-TVSADVINLPSNQVRA-LSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDS 162 (186)
Q Consensus 85 ~~~~~~-~~~~d~~~~~~~~l~~-~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (186)
....++ ++..|+....+ +.. .. ...+||+|++-.+ .-....+ .+.-..++.....
T Consensus 131 lR~~Vk~Vv~cDV~~~~p--l~~~~~-~p~~~D~v~s~fc---LE~a~~d----~~~y~~al~ni~~------------- 187 (256)
T PF01234_consen 131 LRRAVKQVVPCDVTQPNP--LDPPVV-LPPKFDCVISSFC---LESACKD----LDEYRRALRNISS------------- 187 (256)
T ss_dssp HHHHEEEEEE--TTSSST--TTTS-S-S-SSEEEEEEESS---HHHH-SS----HHHHHHHHHHHHT-------------
T ss_pred HHHhhceEEEeeccCCCC--CCcccc-CccchhhhhhhHH---HHHHcCC----HHHHHHHHHHHHH-------------
Confidence 001122 55677765432 111 11 1235999988432 0001111 2335577777777
Q ss_pred CCCCcccccCcEEEEEEccC
Q 038391 163 STDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 163 ~~~~~~LkpgG~lvi~~~~~ 182 (186)
+|||||.|++...-+
T Consensus 188 -----lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 188 -----LLKPGGHLILAGVLG 202 (256)
T ss_dssp -----TEEEEEEEEEEEESS
T ss_pred -----HcCCCcEEEEEEEcC
Confidence 999999999876544
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.076 Score=47.92 Aligned_cols=112 Identities=20% Similarity=0.275 Sum_probs=73.6
Q ss_pred CCCCC-EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGS-SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~-~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
+++-. ++|-+|||.-.++..+.+- +--.|+.+|+|+..++. +....-..+...|+....+ +
T Consensus 45 ~~p~~~~~l~lGCGNS~l~e~ly~~-----G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~f--------e 111 (482)
T KOG2352|consen 45 LSPSDFKILQLGCGNSELSEHLYKN-----GFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVF--------E 111 (482)
T ss_pred hchhhceeEeecCCCCHHHHHHHhc-----CCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccC--------C
Confidence 35555 9999999999888888775 23479999999987543 2344567777888877654 3
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
+.+||+|+.-+..+........ ..........+.+..+ +|++||+++.-++
T Consensus 112 dESFdiVIdkGtlDal~~de~a-~~~~~~v~~~~~eVsr------------------vl~~~gk~~svtl 162 (482)
T KOG2352|consen 112 DESFDIVIDKGTLDALFEDEDA-LLNTAHVSNMLDEVSR------------------VLAPGGKYISVTL 162 (482)
T ss_pred CcceeEEEecCccccccCCchh-hhhhHHhhHHHhhHHH------------------HhccCCEEEEEEe
Confidence 6899999874421111111111 0101234566667776 9999999887665
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.0058 Score=50.34 Aligned_cols=75 Identities=25% Similarity=0.309 Sum_probs=44.4
Q ss_pred CCCCC--CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC-------C--cC------CCCCeEEEEeeecC
Q 038391 36 LIKPG--SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP-------S--LH------CDARVQTVSADVIN 98 (186)
Q Consensus 36 ~~~~~--~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~-------~--~~------~~~~~~~~~~d~~~ 98 (186)
.++++ .+|||..+|-|.-+..++.. |++|+++|-+|..-. . .. ...+++++++|..+
T Consensus 70 Glk~~~~~~VLDaTaGLG~Da~vlA~~------G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~ 143 (234)
T PF04445_consen 70 GLKPGMRPSVLDATAGLGRDAFVLASL------GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE 143 (234)
T ss_dssp T-BTTB---EEETT-TTSHHHHHHHHH------T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC
T ss_pred CCCCCCCCEEEECCCcchHHHHHHHcc------CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH
Confidence 35665 48999999999999999975 579999999997611 1 11 12479999998776
Q ss_pred CChhhHhhhCCCCCCccEEEeCCCC
Q 038391 99 LPSNQVRALSPKQKGFSVILSDMCP 123 (186)
Q Consensus 99 ~~~~~l~~~~~~~~~~D~V~~d~~~ 123 (186)
.-.. +..+||+|..|+.+
T Consensus 144 ~L~~-------~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 144 YLRQ-------PDNSFDVVYFDPMF 161 (234)
T ss_dssp HCCC-------HSS--SEEEE--S-
T ss_pred HHhh-------cCCCCCEEEECCCC
Confidence 4221 36799999999643
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.0014 Score=53.21 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=32.3
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
..++||+|+|.|-+|..++..+ .+|++.|.|..|...
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f------eevyATElS~tMr~r 149 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF------EEVYATELSWTMRDR 149 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH------HHHHHHHhhHHHHHH
Confidence 4689999999999999999887 579999999999543
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.0045 Score=51.95 Aligned_cols=95 Identities=9% Similarity=0.059 Sum_probs=57.2
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCC
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~ 121 (186)
+++|+.||.|++..-+-+.- --.|+++|+++....-....-. ....+|+.......+ +. .+|+++...
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-----~~~~~a~e~~~~a~~~y~~N~~-~~~~~Di~~~~~~~l-----~~-~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-----FEVVWAVEIDPDACETYKANFP-EVICGDITEIDPSDL-----PK-DVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-----EEEEEEEESSHHHHHHHHHHHT-EEEESHGGGCHHHHH-----HH-T-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcC-----cEEEEEeecCHHHHHhhhhccc-ccccccccccccccc-----cc-cceEEEecc
Confidence 68999999999999998871 1369999999998654211111 777889988865544 22 599999987
Q ss_pred CCCCCCCcc---cchHHHHHHHHHHHHHHc
Q 038391 122 CPSVSGITT---KDAALSVELGMRAVDLAL 148 (186)
Q Consensus 122 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 148 (186)
+|..-.... ........+....++.+.
T Consensus 70 PCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~ 99 (335)
T PF00145_consen 70 PCQGFSIAGKRKGFDDPRNSLFFEFLRIVK 99 (335)
T ss_dssp --TTTSTTSTHHCCCCHTTSHHHHHHHHHH
T ss_pred CCceEeccccccccccccchhhHHHHHHHh
Confidence 664322211 111122245556666555
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.028 Score=47.29 Aligned_cols=67 Identities=15% Similarity=0.160 Sum_probs=42.9
Q ss_pred CeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCc-----ccchHHHHHHHHHHHHHHcCCcccCCCCCCCCC
Q 038391 88 RVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGIT-----TKDAALSVELGMRAVDLALGPAALASPVNNSDS 162 (186)
Q Consensus 88 ~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (186)
.-+++++|+.+.. ..+ ++++||+|++|++....... ......-......++.++.+
T Consensus 8 ~~~i~~gD~~~~l----~~l--~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~r------------- 68 (284)
T PRK11524 8 AKTIIHGDALTEL----KKI--PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHR------------- 68 (284)
T ss_pred CCEEEeccHHHHH----Hhc--ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHH-------------
Confidence 3467788886532 122 46799999999875431110 01112233456678888888
Q ss_pred CCCCcccccCcEEEEE
Q 038391 163 STDSGVLKPGGHLVIK 178 (186)
Q Consensus 163 ~~~~~~LkpgG~lvi~ 178 (186)
+|||||.|+|.
T Consensus 69 -----vLK~~G~i~i~ 79 (284)
T PRK11524 69 -----VLKKQGTMYIM 79 (284)
T ss_pred -----HhCCCcEEEEE
Confidence 99999999984
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.083 Score=48.31 Aligned_cols=40 Identities=28% Similarity=0.279 Sum_probs=33.4
Q ss_pred CCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 38 KPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 38 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.++.+|+-+|||+ |..+...++.+ |.+|+++|.++..++.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l-----GA~V~a~D~~~~rle~ 203 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL-----GAIVRAFDTRPEVAEQ 203 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHH
Confidence 5688999999998 67777788887 4689999999988665
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.13 Score=42.07 Aligned_cols=121 Identities=16% Similarity=0.040 Sum_probs=59.3
Q ss_pred hhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------------------
Q 038391 22 RSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------------------- 82 (186)
Q Consensus 22 r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------------------- 82 (186)
|-+.++.+.-..+..-+..-++.|-|||.|++...+.-.-+. .-..|+|-||++.+++.
T Consensus 34 RLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~--~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~e 111 (246)
T PF11599_consen 34 RLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRR--RLRRVYASDIDEDALELARKNLSLLTPEGLEARREE 111 (246)
T ss_dssp HHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGG--GEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhH--HHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHH
Confidence 334444444433332233458999999999999888765332 02379999999977321
Q ss_pred -----------------------------cCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccch
Q 038391 83 -----------------------------LHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDA 133 (186)
Q Consensus 83 -----------------------------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~ 133 (186)
..........++|+++.. .+..+. .+...|+|++|.+.--...|. .
T Consensus 112 L~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~--~~~~~~-~~~~~diViTDlPYG~~t~W~--g 186 (246)
T PF11599_consen 112 LRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPS--PLAVLD-AGFTPDIVITDLPYGEMTSWQ--G 186 (246)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HH--HHHHHH-TT---SEEEEE--CCCSSSTT--S
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCc--hhhhhc-cCCCCCEEEecCCCccccccc--C
Confidence 001223445567776532 222221 245679999998643222232 2
Q ss_pred HHHHHHHHHHHHHHcC
Q 038391 134 ALSVELGMRAVDLALG 149 (186)
Q Consensus 134 ~~~~~~~~~~~~~~~~ 149 (186)
..+..-...++.....
T Consensus 187 ~~~~~p~~~ml~~l~~ 202 (246)
T PF11599_consen 187 EGSGGPVAQMLNSLAP 202 (246)
T ss_dssp ---HHHHHHHHHHHHC
T ss_pred CCCCCcHHHHHHHHHh
Confidence 2444556677777776
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.11 Score=42.54 Aligned_cols=73 Identities=18% Similarity=0.170 Sum_probs=49.0
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
.+|.+||.+|-|-|.....+-+. ++ .+=+.||..+.-+.. -....++..+.+--.+... .+ +++
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~-~p----~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~----~L--~d~ 168 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA-PP----DEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLN----TL--PDK 168 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc-CC----cceEEEecCHHHHHHHHhcccccccceEEEecchHhhhc----cc--ccc
Confidence 67899999999999888877766 32 456678888766543 1234567777664333221 11 467
Q ss_pred CccEEEeCC
Q 038391 113 GFSVILSDM 121 (186)
Q Consensus 113 ~~D~V~~d~ 121 (186)
.||.|+-|.
T Consensus 169 ~FDGI~yDT 177 (271)
T KOG1709|consen 169 HFDGIYYDT 177 (271)
T ss_pred CcceeEeec
Confidence 899999863
|
|
| >PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.14 Score=42.91 Aligned_cols=109 Identities=21% Similarity=0.218 Sum_probs=52.8
Q ss_pred CCCCCEEEEEcccC--Ch--HHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 37 IKPGSSVLDLGCAP--GA--WLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 37 ~~~~~~vLDlGcG~--G~--~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
++...+||-+|+|+ |. -+..+.+.++. +.-++-.|+.+-.-.. -..+.+|+..+. +..
T Consensus 59 VP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~---~ailvDnDi~d~vSDa------~~~~~~Dc~t~~---------~~~ 120 (299)
T PF06460_consen 59 VPHNMRVLHLGAGSDKGVAPGTAVLRQWLPE---DAILVDNDIRDYVSDA------DQSIVGDCRTYM---------PPD 120 (299)
T ss_dssp --TT-EEEEES---TTSB-HHHHHHHHHS-T---T-EEEEEESS--B-SS------SEEEES-GGGEE---------ESS
T ss_pred eccCcEEEEecccccCCcCCchHHHHHhCCC---CcEEEecchhhhcccc------CCceeccccccC---------CCC
Confidence 36678999999996 32 34555566655 6788888887654221 234567876553 357
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+||+|++||=-.....-..+................. .|+=||.++||+=+
T Consensus 121 k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~------------------kLaLGGSvaiKiTE 171 (299)
T PF06460_consen 121 KFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKE------------------KLALGGSVAIKITE 171 (299)
T ss_dssp -EEEEEE----TTS-SS-S------THHHHHHHHHHH------------------HEEEEEEEEEEE-S
T ss_pred cccEEEEecccccccccccccCCccccHHHHHHHHHh------------------hhhcCceEEEEeec
Confidence 9999999982000001111111112223344555555 78889999999743
|
This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.048 Score=44.03 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=39.4
Q ss_pred EEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecC
Q 038391 43 VLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVIN 98 (186)
Q Consensus 43 vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~ 98 (186)
|.|+||--|++..++++.-. ..+++++|+++.-+.. .....++.+..+|-..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~----~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~ 59 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK----APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE 59 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS----EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG
T ss_pred CceeccchhHHHHHHHhcCC----CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc
Confidence 68999999999999999832 2379999999977544 4556789999998654
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.037 Score=45.28 Aligned_cols=64 Identities=19% Similarity=0.117 Sum_probs=41.8
Q ss_pred EEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCc----ccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCC
Q 038391 90 QTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGIT----TKDAALSVELGMRAVDLALGPAALASPVNNSDSSTD 165 (186)
Q Consensus 90 ~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (186)
+++++|+.+. +..+ +++++|+|++|+|....... ........+....++.++.+
T Consensus 3 ~l~~gD~le~----l~~l--pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~R---------------- 60 (227)
T PRK13699 3 RFILGNCIDV----MARF--PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYR---------------- 60 (227)
T ss_pred eEEechHHHH----HHhC--CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHH----------------
Confidence 4667887643 2222 57899999999876431110 01112234667788888888
Q ss_pred CcccccCcEEEE
Q 038391 166 SGVLKPGGHLVI 177 (186)
Q Consensus 166 ~~~LkpgG~lvi 177 (186)
+|||||.+++
T Consensus 61 --VLKpgg~l~i 70 (227)
T PRK13699 61 --VLKKDALMVS 70 (227)
T ss_pred --HcCCCCEEEE
Confidence 9999999886
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.0077 Score=51.33 Aligned_cols=92 Identities=13% Similarity=0.068 Sum_probs=63.9
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVIN 98 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~ 98 (186)
++.|......+...++.|+|+-+|-|++|..+.=..+ ..+|+++|.+|..++. +....+...+.+|...
T Consensus 181 N~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~ag----Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~ 256 (351)
T KOG1227|consen 181 NIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAG----AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRN 256 (351)
T ss_pred cHHHHHHhhhcccccchhhhhhcccceEEeehhhccC----ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccc
Confidence 4556556656556678999999999999994444433 4799999999988654 2334455566666665
Q ss_pred CChhhHhhhCCCCCCccEEEeCCCCCCCCCcc
Q 038391 99 LPSNQVRALSPKQKGFSVILSDMCPSVSGITT 130 (186)
Q Consensus 99 ~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~ 130 (186)
.. +....|-|...+-|+....|-
T Consensus 257 ~~---------~~~~AdrVnLGLlPSse~~W~ 279 (351)
T KOG1227|consen 257 PK---------PRLRADRVNLGLLPSSEQGWP 279 (351)
T ss_pred cC---------ccccchheeeccccccccchH
Confidence 43 346788888877666666554
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.061 Score=39.19 Aligned_cols=36 Identities=28% Similarity=0.432 Sum_probs=29.4
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKV 80 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i 80 (186)
+-..-+|+|||+|.+.-.+.+. |-.-+|+|.-...+
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E------Gy~G~GiD~R~Rk~ 93 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE------GYPGWGIDARRRKS 93 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC------CCCccccccccccc
Confidence 3457999999999888887775 67899999887763
|
; GO: 0008168 methyltransferase activity |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.094 Score=45.62 Aligned_cols=77 Identities=23% Similarity=0.434 Sum_probs=47.0
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCC--ChhhHhhhCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINL--PSNQVRALSPKQK 112 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~--~~~~l~~~~~~~~ 112 (186)
.++++.+||.+|||+ |..+..+++..+. .+|+++|.++.+++.........++ +.... ....+..+. .+.
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~----~~vi~~~~~~~~~~~~~~~~~~~vi--~~~~~~~~~~~l~~~~-~~~ 253 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGA----ERVIAIDRVPERLEMARSHLGAETI--NFEEVDDVVEALRELT-GGR 253 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEEcCCHHHHHHHHHcCCcEEE--cCCcchHHHHHHHHHc-CCC
Confidence 357889999999987 8888888888632 4699999998775542221122222 11111 112233333 245
Q ss_pred CccEEEe
Q 038391 113 GFSVILS 119 (186)
Q Consensus 113 ~~D~V~~ 119 (186)
.+|+|+.
T Consensus 254 ~~D~vld 260 (386)
T cd08283 254 GPDVCID 260 (386)
T ss_pred CCCEEEE
Confidence 7999987
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.086 Score=41.61 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=30.5
Q ss_pred HhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC
Q 038391 25 FKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK 79 (186)
Q Consensus 25 ~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~ 79 (186)
.+|++.+.... -.+|..|||..||+|..+....+. +-+.+|+|+++..
T Consensus 178 ~~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l------~R~~ig~E~~~~y 225 (231)
T PF01555_consen 178 VELIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEEL------GRRYIGIEIDEEY 225 (231)
T ss_dssp HHHHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHHT------T-EEEEEESSHHH
T ss_pred HHHHHHHHHhh-hccceeeehhhhccChHHHHHHHc------CCeEEEEeCCHHH
Confidence 35555333322 377999999999999655555554 5689999998764
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.1 Score=47.29 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=54.9
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
..|+|+.+|.|+|+..+.+. .|+.+-+-+..-.. +.+ +-..+.=+..++. =.+.
T Consensus 367 RNVMDMnAg~GGFAAAL~~~--------~VWVMNVVP~~~~ntL~vIydRGL---IG~yhDWCE~fsT--------YPRT 427 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD--------PVWVMNVVPVSGPNTLPVIYDRGL---IGVYHDWCEAFST--------YPRT 427 (506)
T ss_pred eeeeeecccccHHHHHhccC--------CceEEEecccCCCCcchhhhhccc---chhccchhhccCC--------CCcc
Confidence 36999999999999999765 25555444442111 111 1111111222222 2579
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
||+|.++.-++ ..... -..+..+.++.| +|+|+|.++|.-
T Consensus 428 YDLlHA~~lfs--~~~~r------C~~~~illEmDR------------------ILRP~G~~iiRD 467 (506)
T PF03141_consen 428 YDLLHADGLFS--LYKDR------CEMEDILLEMDR------------------ILRPGGWVIIRD 467 (506)
T ss_pred hhheehhhhhh--hhccc------ccHHHHHHHhHh------------------hcCCCceEEEec
Confidence 99999864211 11111 125577778888 999999999853
|
; GO: 0008168 methyltransferase activity |
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.28 Score=36.71 Aligned_cols=94 Identities=24% Similarity=0.300 Sum_probs=50.4
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEe
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILS 119 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~ 119 (186)
..+|+++|-|.=.......+.. |..|+++|+.+.... ..+.++.-|+.++..... ...|+|.+
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~-----G~dV~~tDi~~~~a~-----~g~~~v~DDif~P~l~iY-------~~a~lIYS 76 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER-----GFDVIATDINPRKAP-----EGVNFVVDDIFNPNLEIY-------EGADLIYS 76 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH-----S-EEEEE-SS-S---------STTEE---SSS--HHHH-------TTEEEEEE
T ss_pred CCcEEEECcCCCHHHHHHHHHc-----CCcEEEEECcccccc-----cCcceeeecccCCCHHHh-------cCCcEEEE
Confidence 4499999998765444444433 579999999999322 468899999998765432 57899988
Q ss_pred CCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 120 DMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 120 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
= .| . .++....++.+. +-|.-++|+.|.+|.
T Consensus 77 i-RP----P--------~El~~~il~lA~---------------------~v~adlii~pL~~e~ 107 (127)
T PF03686_consen 77 I-RP----P--------PELQPPILELAK---------------------KVGADLIIRPLGGES 107 (127)
T ss_dssp E-S--------------TTSHHHHHHHHH---------------------HHT-EEEEE-BTTB-
T ss_pred e-CC----C--------hHHhHHHHHHHH---------------------HhCCCEEEECCCCCC
Confidence 1 11 1 122444555554 337888999888875
|
; PDB: 2K4M_A. |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.085 Score=45.38 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=50.3
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCCcC-CCCCeEEEEeeecCCChhhHhhhCCCCCCccEEE
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPSLH-CDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~~~-~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~ 118 (186)
-+++||.||.|++..-+-+. +- -+.++|+.+..+.... ......++..|+.......+ ...++|+++
T Consensus 4 ~~~idLFsG~GG~~lGf~~a------gf~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~-----~~~~~Dvli 72 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA------GFEIVFANEIDPPAVATYKANFPHGDIILGDIKELDGEAL-----RKSDVDVLI 72 (328)
T ss_pred ceEEeeccCCchHHHHHHhc------CCeEEEEEecCHHHHHHHHHhCCCCceeechHhhcChhhc-----cccCCCEEE
Confidence 47999999999999888876 33 5888999999876522 22224556677765543322 112899999
Q ss_pred eCCCCC
Q 038391 119 SDMCPS 124 (186)
Q Consensus 119 ~d~~~~ 124 (186)
...+|.
T Consensus 73 gGpPCQ 78 (328)
T COG0270 73 GGPPCQ 78 (328)
T ss_pred eCCCCc
Confidence 987764
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.16 Score=43.25 Aligned_cols=42 Identities=26% Similarity=0.398 Sum_probs=29.4
Q ss_pred CCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 37 IKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 37 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
..++++||-.|||+ |..+..+++..+ ..+|+++|.+++.++.
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G----~~~Vi~~~~~~~~~~~ 209 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLG----AAEIVCADVSPRSLSL 209 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC----CcEEEEEeCCHHHHHH
Confidence 34688999998764 555556666653 1379999999887654
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.044 Score=39.99 Aligned_cols=43 Identities=26% Similarity=0.293 Sum_probs=30.1
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
+||+|+| .+-..+++-...-+.+..++..+.. .|+|||.|++.
T Consensus 1 ~yDvilc-----lSVtkWIHLn~GD~Gl~~~f~~~~~------------------~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILC-----LSVTKWIHLNWGDEGLKRFFRRIYS------------------LLRPGGILILE 43 (110)
T ss_dssp -EEEEEE-----ES-HHHHHHHHHHHHHHHHHHHHHH------------------HEEEEEEEEEE
T ss_pred CccEEEE-----EEeeEEEEecCcCHHHHHHHHHHHH------------------hhCCCCEEEEe
Confidence 4899998 3444444444445566677888887 99999999985
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.58 E-value=1.5 Score=35.48 Aligned_cols=73 Identities=12% Similarity=0.167 Sum_probs=51.5
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-CCCCCeEEEEeeecCCC
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-HCDARVQTVSADVINLP 100 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-~~~~~~~~~~~d~~~~~ 100 (186)
+...+.....++| ..|+++|..-|+-+.+++..+..-+...+|+++||+-..+..+ ....++.|++++-.++.
T Consensus 58 ~~~yQellw~~~P-~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpa 131 (237)
T COG3510 58 MWNYQELLWELQP-SLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPA 131 (237)
T ss_pred HHHHHHHHHhcCC-ceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHH
Confidence 3334444333444 4899999999999988887765421135899999998886653 33678999999877654
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=93.57 E-value=1.1 Score=37.56 Aligned_cols=79 Identities=18% Similarity=0.259 Sum_probs=54.8
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCC-CCCCeEEEEeCCCCCCCC----cCCC--CCeEEEEeeecC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPL-DNGGSVVGIDVKKVKVPS----LHCD--ARVQTVSADVIN 98 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~-~~~~~v~gvDis~~~i~~----~~~~--~~~~~~~~d~~~ 98 (186)
.|+..+....++.+...++|+|||.|.++.++++.+... .+...++.||-....... .... ..+.=++.|+.+
T Consensus 5 Sli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~d 84 (259)
T PF05206_consen 5 SLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIKD 84 (259)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEeec
Confidence 466667777778888999999999999999999987421 014689999987765433 1111 245555778877
Q ss_pred CChhhH
Q 038391 99 LPSNQV 104 (186)
Q Consensus 99 ~~~~~l 104 (186)
+....+
T Consensus 85 l~l~~~ 90 (259)
T PF05206_consen 85 LDLSKL 90 (259)
T ss_pred cchhhc
Confidence 764433
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.21 Score=46.88 Aligned_cols=37 Identities=11% Similarity=0.110 Sum_probs=27.4
Q ss_pred CEEEEEcccCChHHHHHHHHhC------C--CCCCCeEEEEeCCC
Q 038391 41 SSVLDLGCAPGAWLQVACQSLG------P--LDNGGSVVGIDVKK 77 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~------~--~~~~~~v~gvDis~ 77 (186)
-+|+|+|-|+|.......+.+. + .+...+++++|..|
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p 103 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFP 103 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCC
Confidence 5899999999998888877661 1 11135899999866
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.069 Score=44.42 Aligned_cols=73 Identities=19% Similarity=0.253 Sum_probs=43.5
Q ss_pred cCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCChhhHhhhC
Q 038391 34 YKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 34 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
+..+++..+|+|||||-==++....... ++..++|+||+..+++. .....+.+....|.....
T Consensus 100 f~~~~~p~sVlDigCGlNPlalp~~~~~----~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-------- 167 (251)
T PF07091_consen 100 FGRIPPPDSVLDIGCGLNPLALPWMPEA----PGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-------- 167 (251)
T ss_dssp CCCS---SEEEEET-TTCHHHHHTTTSS----TT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH--------
T ss_pred HhcCCCCchhhhhhccCCceehhhcccC----CCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC--------
Confidence 4455667899999999766665555432 35799999999998654 233345556666654332
Q ss_pred CCCCCccEEEe
Q 038391 109 PKQKGFSVILS 119 (186)
Q Consensus 109 ~~~~~~D~V~~ 119 (186)
+....|+.+.
T Consensus 168 -~~~~~DlaLl 177 (251)
T PF07091_consen 168 -PKEPADLALL 177 (251)
T ss_dssp -TTSEESEEEE
T ss_pred -CCCCcchhhH
Confidence 3456788776
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.32 Score=41.54 Aligned_cols=42 Identities=12% Similarity=0.010 Sum_probs=29.5
Q ss_pred CCCCCEEEEEcccC-ChHHHHHHHH-hCCCCCCCeEEEEeCCCCCCCC
Q 038391 37 IKPGSSVLDLGCAP-GAWLQVACQS-LGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 37 ~~~~~~vLDlGcG~-G~~~~~l~~~-~~~~~~~~~v~gvDis~~~i~~ 82 (186)
+++|++||-+|||+ |.++..++++ ++ +.+|+++|.++.+++.
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g----~~~vi~~~~~~~k~~~ 204 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYP----ESKLVVFGKHQEKLDL 204 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcC----CCcEEEEeCcHhHHHH
Confidence 47799999999865 3344455554 32 3689999999877554
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.52 Score=38.60 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=53.6
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
++.+.++.|+||=-++++.++.+.-. ..++++.|+++..+.. +.+..+++...+|....-.
T Consensus 14 V~~~~~iaDIGsDHAYLp~~Lv~~~~----~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~-------- 81 (226)
T COG2384 14 VKQGARIADIGSDHAYLPIYLVKNNP----ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLE-------- 81 (226)
T ss_pred HHcCCceeeccCchhHhHHHHHhcCC----cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccC--------
Confidence 45677899999999999999999854 4689999999987543 5666778888887643321
Q ss_pred CCCCccEEEe
Q 038391 110 KQKGFSVILS 119 (186)
Q Consensus 110 ~~~~~D~V~~ 119 (186)
++..+|.|+.
T Consensus 82 ~~d~~d~ivI 91 (226)
T COG2384 82 LEDEIDVIVI 91 (226)
T ss_pred ccCCcCEEEE
Confidence 3457887754
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.12 Score=40.34 Aligned_cols=114 Identities=21% Similarity=0.291 Sum_probs=58.9
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEe
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILS 119 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~ 119 (186)
+++.+-+|...= |-..++-+. +..+|+.||..+--+..... .+++.+ .+.....++..-.++||.+.|
T Consensus 2 ~~~g~V~GS~~P-wvEv~aL~~----GA~~iltveyn~L~i~~~~~-dr~ssi------~p~df~~~~~~y~~~fD~~as 69 (177)
T PF03269_consen 2 GKSGLVVGSMQP-WVEVMALQH----GAAKILTVEYNKLEIQEEFR-DRLSSI------LPVDFAKNWQKYAGSFDFAAS 69 (177)
T ss_pred CceEEEEecCCc-hhhHHHHHc----CCceEEEEeecccccCcccc-cccccc------cHHHHHHHHHHhhccchhhhe
Confidence 567777777744 334444333 34689999988765543211 122111 111222233222468999877
Q ss_pred CCCCCCCCCc-ccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 120 DMCPSVSGIT-TKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 120 d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
--.....|.. --++.....-. ..+....+ +|||||.|++.+--|+|
T Consensus 70 ~~siEh~GLGRYGDPidp~Gdl-~~m~~i~~------------------vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 70 FSSIEHFGLGRYGDPIDPIGDL-RAMAKIKC------------------VLKPGGLLFLGVPVGTD 116 (177)
T ss_pred echhccccccccCCCCCccccH-HHHHHHHH------------------hhccCCeEEEEeecCCc
Confidence 3221111111 01111111112 44555555 99999999999988876
|
|
| >PF14314 Methyltrans_Mon: Virus-capping methyltransferase | Back alignment and domain information |
|---|
Probab=92.79 E-value=1.8 Score=40.91 Aligned_cols=129 Identities=17% Similarity=0.190 Sum_probs=74.4
Q ss_pred hhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEE---eCCCCCCCCcC----------CCCC
Q 038391 22 RSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGI---DVKKVKVPSLH----------CDAR 88 (186)
Q Consensus 22 r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gv---Dis~~~i~~~~----------~~~~ 88 (186)
.+-+|+..++..++ ++. .-.|-.|=|+|++|..+++.++. ++++-. |++..++.... ...+
T Consensus 307 GAHYKlRsIL~~~~-i~~-~d~l~~GDGSGGita~lLR~~p~----sr~iFNSLL~~~~~~l~Gs~P~PPsAi~~~g~~~ 380 (675)
T PF14314_consen 307 GAHYKLRSILKNLN-IKY-RDALCGGDGSGGITACLLRMNPT----SRGIFNSLLELDGSDLRGSHPSPPSAIMALGNDK 380 (675)
T ss_pred cchhhHHHHHHhcC-CCc-ceeEEEecCchHHHHHHHHhCcc----cceeeeccccccCCCCCCCCCCCcHHHhccCccc
Confidence 34458888888877 444 34588888999999999999764 565543 44444433211 1111
Q ss_pred eEEE--------EeeecCCChhh-Hhhh-CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCC
Q 038391 89 VQTV--------SADVINLPSNQ-VRAL-SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVN 158 (186)
Q Consensus 89 ~~~~--------~~d~~~~~~~~-l~~~-~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (186)
-+.+ ..|.++...+. ...+ ...+-++|+|++||- ..+......+.....+.+..
T Consensus 381 ~Rcvn~~~~W~~pSDLs~~~TW~YF~~l~~~~~~~idLiv~DmE-------V~d~~~~~kIe~~l~~~~~~--------- 444 (675)
T PF14314_consen 381 SRCVNLDTCWEHPSDLSDPETWKYFVSLKKQHNLSIDLIVMDME-------VRDDSIIRKIEDNLRDYVHS--------- 444 (675)
T ss_pred ceeecchhhhcCccccCCccHHHHHHHHHhhcCCcccEEEEece-------ecChHHHHHHHHHHHHHHHH---------
Confidence 2222 12333332111 1111 123569999999982 22322333334445555555
Q ss_pred CCCCCCCCcccccCcEEEEEEcc
Q 038391 159 NSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 159 ~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+|.++|+|++|++-
T Consensus 445 ---------ll~~~gtLIfKTYl 458 (675)
T PF14314_consen 445 ---------LLEEPGTLIFKTYL 458 (675)
T ss_pred ---------hcCCCcEEEEehhH
Confidence 88999999999874
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.27 Score=42.15 Aligned_cols=42 Identities=24% Similarity=0.411 Sum_probs=29.9
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~ 82 (186)
.++++.+||-.|||+ |..+..+++.+ +. +|+++|.++...+.
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~-----G~~~Vi~~~~~~~~~~~ 216 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALA-----GASKIIAVDIDDRKLEW 216 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCeEEEEcCCHHHHHH
Confidence 467899999998754 44555566665 34 59999998877543
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.22 Score=41.90 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=30.3
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
.+|..|||..||+|..+.. |.++ +-+.+|+|++++.++
T Consensus 207 ~~GD~VLDPF~GSGTT~~A-A~~l-----gR~~IG~Ei~~~Y~~ 244 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAV-AKAS-----GRKFIGIEINSEYIK 244 (284)
T ss_pred CCCCEEEECCCCCcHHHHH-HHHc-----CCCEEEEeCCHHHHH
Confidence 7899999999999965544 4444 568999999997754
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.17 Score=43.23 Aligned_cols=68 Identities=15% Similarity=0.140 Sum_probs=46.4
Q ss_pred EEEEcccCChHHHHHHHHhCCCCCCCe-EEEEeCCCCCCCCc-CCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeC
Q 038391 43 VLDLGCAPGAWLQVACQSLGPLDNGGS-VVGIDVKKVKVPSL-HCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120 (186)
Q Consensus 43 vLDlGcG~G~~~~~l~~~~~~~~~~~~-v~gvDis~~~i~~~-~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d 120 (186)
|+|+.||.|+++.-+-+. |.+ +.++|+.+...... ..... .++.+|+.++.... -..+|+++..
T Consensus 1 vidLF~G~GG~~~Gl~~a------G~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~-------~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA------GFKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSD-------IPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHc------CCeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhh-------CCCcCEEEec
Confidence 689999999999888765 344 67899999886541 11222 44567777664332 1368999988
Q ss_pred CCCC
Q 038391 121 MCPS 124 (186)
Q Consensus 121 ~~~~ 124 (186)
.+|.
T Consensus 67 ~PCq 70 (315)
T TIGR00675 67 FPCQ 70 (315)
T ss_pred CCCc
Confidence 7653
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.17 Score=43.58 Aligned_cols=34 Identities=15% Similarity=0.019 Sum_probs=27.8
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK 79 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~ 79 (186)
.-+||--|||.|.++.-++.. |-++-|-|+|--|
T Consensus 151 ki~iLvPGaGlGRLa~dla~~------G~~~qGNEfSy~M 184 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACL------GFKCQGNEFSYFM 184 (369)
T ss_pred CceEEecCCCchhHHHHHHHh------cccccccHHHHHH
Confidence 457999999999999999987 4567777887766
|
|
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.81 Score=35.32 Aligned_cols=83 Identities=14% Similarity=0.108 Sum_probs=43.8
Q ss_pred HHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhh
Q 038391 28 LQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 28 ~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
.....+...+ ..-|||+|=|+|..=-++.+.++ +-+|+.+|-.-..-...- -+.-.++++|+.+.... ++.+
T Consensus 19 ~~a~~~v~~~--~G~VlElGLGNGRTydHLRe~~p----~R~I~vfDR~l~~hp~~~-P~~~~~ilGdi~~tl~~-~~~~ 90 (160)
T PF12692_consen 19 NWAAAQVAGL--PGPVLELGLGNGRTYDHLREIFP----DRRIYVFDRALACHPSST-PPEEDLILGDIRETLPA-LARF 90 (160)
T ss_dssp HHHHHHTTT----S-EEEE--TTSHHHHHHHHH------SS-EEEEESS--S-GGG----GGGEEES-HHHHHHH-HHHH
T ss_pred HHHHHHhcCC--CCceEEeccCCCccHHHHHHhCC----CCeEEEEeeecccCCCCC-CchHheeeccHHHHhHH-HHhc
Confidence 3344443322 35899999999999999999986 489999996554422211 12346788988754322 3333
Q ss_pred CCCCCCccEEEeCC
Q 038391 108 SPKQKGFSVILSDM 121 (186)
Q Consensus 108 ~~~~~~~D~V~~d~ 121 (186)
+.+.-++.+|.
T Consensus 91 ---g~~a~laHaD~ 101 (160)
T PF12692_consen 91 ---GAGAALAHADI 101 (160)
T ss_dssp ----S-EEEEEE--
T ss_pred ---CCceEEEEeec
Confidence 56888898886
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.5 Score=39.45 Aligned_cols=43 Identities=28% Similarity=0.491 Sum_probs=31.4
Q ss_pred cCCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 34 YKLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 34 ~~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
...++++.+||..|+|. |..+..+++.. +.+|++++.++...+
T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~-----G~~V~~~~~s~~~~~ 203 (338)
T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAM-----GAAVIAVDIKEEKLE 203 (338)
T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHc-----CCEEEEEcCCHHHHH
Confidence 33467888999987763 66777777775 468999998887643
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.4 Score=40.48 Aligned_cols=40 Identities=25% Similarity=0.486 Sum_probs=28.0
Q ss_pred CCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCe-EEEEeCCCCCCC
Q 038391 37 IKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGS-VVGIDVKKVKVP 81 (186)
Q Consensus 37 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~-v~gvDis~~~i~ 81 (186)
+++|.+||=+|+|. |..+..+++.+ +.+ |++++.++....
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~-----G~~~vi~~~~~~~~~~ 202 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARAL-----GAEDVIGVDPSPERLE 202 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-----CCCEEEEECCCHHHHH
Confidence 57799999998754 44555566665 355 999998877644
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.25 Score=43.69 Aligned_cols=48 Identities=19% Similarity=0.177 Sum_probs=37.3
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK 79 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~ 79 (186)
+-+++........-..|+|+|+|.|+++++++-.+ +-.|++||-++..
T Consensus 141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-----~lsV~aIegsq~~ 188 (476)
T KOG2651|consen 141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-----GLSVKAIEGSQRL 188 (476)
T ss_pred HHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc-----CceEEEeccchHH
Confidence 34444444444556799999999999999999886 5799999999755
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.5 Score=37.74 Aligned_cols=43 Identities=28% Similarity=0.428 Sum_probs=31.1
Q ss_pred HcCCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCC
Q 038391 33 QYKLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKV 80 (186)
Q Consensus 33 ~~~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i 80 (186)
....++++.+||..|+|+ |..+..+++.. +.+|++++.++...
T Consensus 128 ~~~~~~~~~~vli~g~~~~G~~~~~~a~~~-----g~~v~~~~~~~~~~ 171 (271)
T cd05188 128 RAGVLKPGDTVLVLGAGGVGLLAAQLAKAA-----GARVIVTDRSDEKL 171 (271)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHc-----CCeEEEEcCCHHHH
Confidence 344457899999999986 55555666654 57899999887553
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.51 Score=39.70 Aligned_cols=41 Identities=12% Similarity=0.042 Sum_probs=27.4
Q ss_pred CCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 38 KPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 38 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.++.+||-+|||+ |.++..+++.++. ..|+++|..+.++..
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~----~~v~~~~~~~~rl~~ 184 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGG----SPPAVWETNPRRRDG 184 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCC----ceEEEeCCCHHHHHh
Confidence 3577899888875 5566666666531 347778887766544
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.37 Score=44.23 Aligned_cols=102 Identities=21% Similarity=0.298 Sum_probs=68.2
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
...|.-+|+|-|=+.....+......-+.++++||.+|.++.- .-...+++++..|++.... +..+
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~a--------p~eq 439 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNA--------PREQ 439 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCC--------chhh
Confidence 3457789999997665544433221126799999999998532 2235689999999988752 2368
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEE
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV 176 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lv 176 (186)
.|++++-. -|.. -+ .++..+.++-+.+ .|||.|+.|
T Consensus 440 ~DI~VSEL----LGSF-GD----NELSPECLDG~q~------------------fLkpdgIsI 475 (649)
T KOG0822|consen 440 ADIIVSEL----LGSF-GD----NELSPECLDGAQK------------------FLKPDGISI 475 (649)
T ss_pred ccchHHHh----hccc-cC----ccCCHHHHHHHHh------------------hcCCCceEc
Confidence 99998743 1111 11 2345578888888 999998765
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.53 Score=42.00 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=35.4
Q ss_pred HHHHHHcCCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 28 LQIQKQYKLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 28 ~~~~~~~~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
..+.......-+|++|+-+|||+ |......++.+ |.+|+.+|.++.....
T Consensus 190 ~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~-----Ga~ViV~d~d~~R~~~ 240 (413)
T cd00401 190 DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-----GARVIVTEVDPICALQ 240 (413)
T ss_pred HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CCEEEEEECChhhHHH
Confidence 33445445456799999999998 54555555554 5689999999887554
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.31 Score=36.85 Aligned_cols=38 Identities=11% Similarity=-0.033 Sum_probs=32.9
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
++++|+|+|++.|-.+++++-+ +..+|++++.++....
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~-----GAK~Vva~E~~~kl~k 65 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR-----GASFVVQYEKEEKLRK 65 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc-----CccEEEEeccCHHHHH
Confidence 5789999999999999999987 3468999999998743
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.45 Score=38.87 Aligned_cols=37 Identities=30% Similarity=0.335 Sum_probs=29.9
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKV 80 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i 80 (186)
.+|..|||..||+|.......+. +-+.+|+|+++...
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~------~r~~~g~e~~~~y~ 198 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQS------GRRYIGIELLEQYH 198 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHc------CCCEEEEecCHHHH
Confidence 68999999999999666555553 56899999999764
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=91.00 E-value=4.9 Score=29.80 Aligned_cols=94 Identities=23% Similarity=0.246 Sum_probs=61.7
Q ss_pred CCCCEEEEEcccCCh-HHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 38 KPGSSVLDLGCAPGA-WLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~-~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
.+| +|+++|.|-=. .+..++++ |..|+++||.+.... ..++++..|++++.... -...|+
T Consensus 13 ~~g-kVvEVGiG~~~~VA~~L~e~------g~dv~atDI~~~~a~-----~g~~~v~DDitnP~~~i-------Y~~A~l 73 (129)
T COG1255 13 ARG-KVVEVGIGFFLDVAKRLAER------GFDVLATDINEKTAP-----EGLRFVVDDITNPNISI-------YEGADL 73 (129)
T ss_pred cCC-cEEEEccchHHHHHHHHHHc------CCcEEEEecccccCc-----ccceEEEccCCCccHHH-------hhCccc
Confidence 345 99999876432 22333333 679999999998422 57899999999876542 357899
Q ss_pred EEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 117 V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
|.+=-+ . .++....++.+.+ -|..++|+-|.||.
T Consensus 74 IYSiRp--------p-----pEl~~~ildva~a---------------------Vga~l~I~pL~Ge~ 107 (129)
T COG1255 74 IYSIRP--------P-----PELQSAILDVAKA---------------------VGAPLYIKPLTGEP 107 (129)
T ss_pred eeecCC--------C-----HHHHHHHHHHHHh---------------------hCCCEEEEecCCCC
Confidence 987211 1 2334455555543 37778888888876
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.15 Score=36.97 Aligned_cols=91 Identities=21% Similarity=0.320 Sum_probs=57.4
Q ss_pred cCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCC-hhhHhhhCCCCCCccEEEeCCCCCCCC
Q 038391 49 APGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLP-SNQVRALSPKQKGFSVILSDMCPSVSG 127 (186)
Q Consensus 49 G~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~-~~~l~~~~~~~~~~D~V~~d~~~~~~~ 127 (186)
|.|..+..+++.+ +.+|+++|.++..++...... ...+ .|..+.. .+.+.++.. +..+|+|+- +.+
T Consensus 1 ~vG~~a~q~ak~~-----G~~vi~~~~~~~k~~~~~~~G-a~~~-~~~~~~~~~~~i~~~~~-~~~~d~vid-----~~g 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAM-----GAKVIATDRSEEKLELAKELG-ADHV-IDYSDDDFVEQIRELTG-GRGVDVVID-----CVG 67 (130)
T ss_dssp HHHHHHHHHHHHT-----TSEEEEEESSHHHHHHHHHTT-ESEE-EETTTSSHHHHHHHHTT-TSSEEEEEE-----SSS
T ss_pred ChHHHHHHHHHHc-----CCEEEEEECCHHHHHHHHhhc-cccc-ccccccccccccccccc-cccceEEEE-----ecC
Confidence 4577888888886 489999999997755432222 1111 2222222 235555553 468999987 223
Q ss_pred CcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
. ...+..+.. +|+++|++++--+.+
T Consensus 68 ~------------~~~~~~~~~------------------~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 S------------GDTLQEAIK------------------LLRPGGRIVVVGVYG 92 (130)
T ss_dssp S------------HHHHHHHHH------------------HEEEEEEEEEESSTS
T ss_pred c------------HHHHHHHHH------------------HhccCCEEEEEEccC
Confidence 1 245555666 899999999877665
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.80 E-value=0.89 Score=38.60 Aligned_cols=42 Identities=24% Similarity=0.326 Sum_probs=29.4
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCe-EEEEeCCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGS-VVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~-v~gvDis~~~i~~ 82 (186)
.++++.+||-.|||+ |..+..+++.+ +.+ |++++.++...+.
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~-----G~~~v~~~~~~~~~~~~ 200 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVAL-----GAKSVTAIDINSEKLAL 200 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCeEEEECCCHHHHHH
Confidence 457889999998765 55556666665 344 7899988876543
|
|
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=90.77 E-value=0.9 Score=41.34 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=30.2
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKV 80 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i 80 (186)
+++.|.|.+||+|++.....+.....-...+++|.+..+.+.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~ 258 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTY 258 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHH
Confidence 568999999999998876554432100135799999999874
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=90.48 E-value=0.88 Score=39.44 Aligned_cols=43 Identities=23% Similarity=0.418 Sum_probs=30.9
Q ss_pred CCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCC
Q 038391 35 KLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPS 82 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~ 82 (186)
..+++|++||-+|||+ |..+..+++.. +. +|+++|.++..++.
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~-----G~~~Vi~~~~~~~r~~~ 238 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARAR-----GASKIIGVDINPEKFEK 238 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHC-----CCCcEEEEcCChHHHHH
Confidence 3468899999998764 44555566654 34 69999999877554
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.42 E-value=0.14 Score=41.62 Aligned_cols=36 Identities=17% Similarity=0.407 Sum_probs=30.3
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK 79 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~ 79 (186)
.-.+.|||||-|+++..++..++ ..-++|+||--.-
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fP----dtLiLGmEIR~KV 96 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFP----DTLILGMEIRDKV 96 (249)
T ss_pred cceEEeeccCccchhhhccccCc----cceeeeehhhHHH
Confidence 34689999999999999999986 4889999986543
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.38 Score=41.15 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=24.8
Q ss_pred CCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeC
Q 038391 37 IKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDV 75 (186)
Q Consensus 37 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDi 75 (186)
++++.+||-+|+|+ |.++..+++.. +.+|++++.
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~-----G~~vi~~~~ 204 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLR-----GFEVYVLNR 204 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHc-----CCeEEEEec
Confidence 45788999998865 55555566664 468999987
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=90.27 E-value=0.24 Score=43.60 Aligned_cols=98 Identities=26% Similarity=0.212 Sum_probs=61.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCC-CeEEEEeeecCCChhhHhhhCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDA-RVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~-~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
..-+|||.=+|+|.-++-.+...+. ..+|+..|+++..++. +.... ++.+.+.|+..+-.. .
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~---~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~-------~ 118 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAG---VDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYS-------R 118 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SS---ECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCH-------S
T ss_pred CCceEEeccccccHHHHHHHHHcCC---CCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhh-------c
Confidence 3458999999999988888877542 3689999999987543 23333 567767776542110 3
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
...||+|=.|+ -| . ...+++-+.+ .+|.||.|.|+.
T Consensus 119 ~~~fD~IDlDP----fG--S---------p~pfldsA~~------------------~v~~gGll~vTa 154 (377)
T PF02005_consen 119 QERFDVIDLDP----FG--S---------PAPFLDSALQ------------------AVKDGGLLCVTA 154 (377)
T ss_dssp TT-EEEEEE------SS-------------HHHHHHHHH------------------HEEEEEEEEEEE
T ss_pred cccCCEEEeCC----CC--C---------ccHhHHHHHH------------------HhhcCCEEEEec
Confidence 57999998875 12 1 2246666666 889999999874
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.25 E-value=0.59 Score=38.66 Aligned_cols=41 Identities=24% Similarity=0.208 Sum_probs=27.8
Q ss_pred CCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCC
Q 038391 37 IKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPS 82 (186)
Q Consensus 37 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~ 82 (186)
..++++||-+|+|+ |..+..+++.. +. +|+++|.++..++.
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~-----G~~~Vi~~~~~~~r~~~ 160 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAA-----GAARVVAADPSPDRREL 160 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-----CCCEEEEECCCHHHHHH
Confidence 35788999998764 44555555554 34 49999988876543
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=90.24 E-value=0.42 Score=39.61 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=36.5
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
.|++||=+| -+-+++..+...+. ..+|+.+||.+..+.. ....-.++.++.|+.+.-++. ..++
T Consensus 44 ~gk~il~lG--DDDLtSlA~al~~~---~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~------~~~~ 112 (243)
T PF01861_consen 44 EGKRILFLG--DDDLTSLALALTGL---PKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEE------LRGK 112 (243)
T ss_dssp TT-EEEEES---TT-HHHHHHHHT-----SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TT------TSS-
T ss_pred cCCEEEEEc--CCcHHHHHHHhhCC---CCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHH------HhcC
Confidence 478898777 44444443333332 4799999999998654 122334888888988754332 2579
Q ss_pred ccEEEeCCC
Q 038391 114 FSVILSDMC 122 (186)
Q Consensus 114 ~D~V~~d~~ 122 (186)
||++++|++
T Consensus 113 fD~f~TDPP 121 (243)
T PF01861_consen 113 FDVFFTDPP 121 (243)
T ss_dssp BSEEEE---
T ss_pred CCEEEeCCC
Confidence 999999985
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=90.22 E-value=0.79 Score=39.50 Aligned_cols=43 Identities=26% Similarity=0.386 Sum_probs=30.3
Q ss_pred CCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCC
Q 038391 35 KLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPS 82 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~ 82 (186)
..++++.+||=.|+|+ |..+..+++.. +. +|+++|.++..++.
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~-----G~~~Vi~~~~~~~r~~~ 231 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAA-----GASQVVAVDLNEDKLAL 231 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCcEEEEcCCHHHHHH
Confidence 3467899999998764 44555566654 34 69999998877543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.01 E-value=2.9 Score=36.04 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=28.2
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVK 79 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~ 79 (186)
.+++|.+||-.|+|+ |..+..+++.. +.+|++++.++..
T Consensus 180 ~~~~g~~VlV~G~G~vG~~avq~Ak~~-----Ga~vi~~~~~~~~ 219 (360)
T PLN02586 180 MTEPGKHLGVAGLGGLGHVAVKIGKAF-----GLKVTVISSSSNK 219 (360)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHC-----CCEEEEEeCCcch
Confidence 356788999888865 55666666665 4689999887755
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=89.61 E-value=1.2 Score=38.77 Aligned_cols=107 Identities=18% Similarity=0.260 Sum_probs=63.3
Q ss_pred CCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCcc
Q 038391 37 IKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFS 115 (186)
Q Consensus 37 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D 115 (186)
+++|.+|.-+|||. |.....-+...+ ..+++++|+.+.+++.+....-..++...-...-.+.+.++. ++..|
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~ag----A~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T--~gG~d 256 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAAG----AGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELT--DGGAD 256 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHcC----CceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhc--CCCCC
Confidence 58899999999986 444445555554 479999999999987654444344443211101122334443 34677
Q ss_pred EEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 116 VILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 116 ~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
.++- ..|.. ..++.+.. .++++|..++.-+.+..
T Consensus 257 ~~~e-----~~G~~------------~~~~~al~------------------~~~~~G~~v~iGv~~~~ 290 (366)
T COG1062 257 YAFE-----CVGNV------------EVMRQALE------------------ATHRGGTSVIIGVAGAG 290 (366)
T ss_pred EEEE-----ccCCH------------HHHHHHHH------------------HHhcCCeEEEEecCCCC
Confidence 7754 22221 23444444 66679998887776543
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.49 E-value=0.32 Score=41.17 Aligned_cols=39 Identities=26% Similarity=0.145 Sum_probs=32.8
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
-.+++|||+|||+|...+...... ...+...|++..-+.
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~-----~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG-----AVSVHFQDFNAEVLR 153 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc-----cceeeeEecchhhee
Confidence 458999999999999999888872 368999999988763
|
|
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.95 E-value=5.5 Score=31.57 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=28.5
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK 79 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~ 79 (186)
.+|+-+| |.|.+++...+.|.. .+.-|..||+++.-
T Consensus 4 grVivYG-GkGALGSacv~~Fka--nnywV~siDl~eNe 39 (236)
T KOG4022|consen 4 GRVIVYG-GKGALGSACVEFFKA--NNYWVLSIDLSENE 39 (236)
T ss_pred ceEEEEc-CcchHhHHHHHHHHh--cCeEEEEEeecccc
Confidence 4677666 889999999998875 35689999998865
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=88.93 E-value=0.55 Score=36.89 Aligned_cols=48 Identities=23% Similarity=0.274 Sum_probs=31.1
Q ss_pred ccEEEeCCCCCCCCC--------cccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 114 FSVILSDMCPSVSGI--------TTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
+|+|++|+|...... .......=.+....++.++.+ +|||+|.++|.+
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~r------------------vLk~~g~~~i~~ 56 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYR------------------VLKPGGSIFIFI 56 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHH------------------HEEEEEEEEEEE
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHh------------------hcCCCeeEEEEe
Confidence 488999887544433 112233445567788889998 999999999864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.87 E-value=0.51 Score=42.71 Aligned_cols=114 Identities=16% Similarity=0.187 Sum_probs=73.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC------CCCeEEEEeeecCCChhhHhhhCC---
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC------DARVQTVSADVINLPSNQVRALSP--- 109 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~------~~~~~~~~~d~~~~~~~~l~~~~~--- 109 (186)
.+..+|-+|-|.|+++.++-..++ ..++++|++.|+++..+.. ..+....-.|-. ..+..+..
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p----~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl----~~~~~~~k~~~ 366 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLP----KFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGL----DFLQRTAKSQQ 366 (482)
T ss_pred ccCcEEEEecCCCccccceeeecC----ccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhch----HHHHHHhhccc
Confidence 356889999999999999998875 4899999999999765211 011111112221 22333321
Q ss_pred CCCCccEEEeCCC-CCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 110 KQKGFSVILSDMC-PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 110 ~~~~~D~V~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
.+-.||++..|-. ++..|..-. ........++..+.. .|.|.|.++|.+..
T Consensus 367 ~~~~~dvl~~dvds~d~~g~~~p---p~~fva~~~l~~~k~------------------~l~p~g~f~inlv~ 418 (482)
T KOG2352|consen 367 EDICPDVLMVDVDSKDSHGMQCP---PPAFVAQVALQPVKM------------------ILPPRGMFIINLVT 418 (482)
T ss_pred cccCCcEEEEECCCCCcccCcCC---chHHHHHHHHHHHhh------------------ccCccceEEEEEec
Confidence 3468999988753 123333322 334455567777777 99999999998764
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.75 E-value=1.7 Score=35.78 Aligned_cols=39 Identities=8% Similarity=0.105 Sum_probs=31.0
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCC----CCeEEEEeCCCCC
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDN----GGSVVGIDVKKVK 79 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~----~~~v~gvDis~~~ 79 (186)
-+|+++|+|+|.+...+.+.+....+ ..+++-||+|+.+
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L 62 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYL 62 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHH
Confidence 58999999999999999998765322 3589999999988
|
; PDB: 4F3N_A 1ZKD_B. |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.66 E-value=0.39 Score=43.31 Aligned_cols=48 Identities=23% Similarity=0.256 Sum_probs=35.5
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEe
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSA 94 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~ 94 (186)
-|||+|+|+|.++...++.. +-.|+++|.-.-|... +....+++++.-
T Consensus 69 ~vLdigtGTGLLSmMAvrag-----aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInk 123 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG-----ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINK 123 (636)
T ss_pred EEEEccCCccHHHHHHHHhc-----CCeEEeehhhchHHHHHHHHHhcCCCccceeeecc
Confidence 48999999998888888773 4589999999888432 344456666644
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=88.56 E-value=3.2 Score=34.32 Aligned_cols=86 Identities=15% Similarity=0.170 Sum_probs=57.2
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh-hhH-hhh-CCCCCCcc
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQV-RAL-SPKQKGFS 115 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~-~~l-~~~-~~~~~~~D 115 (186)
....||-.||..|+++..++..+-. .|..|++.--+-+....-....++.....|+++... ..+ .++ ..+.++.|
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~--~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld 83 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFAR--NGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLD 83 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHh--CCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceE
Confidence 4568999999999999999988865 377999986555443332223457777888876541 111 111 12578999
Q ss_pred EEEeCCCCCCC
Q 038391 116 VILSDMCPSVS 126 (186)
Q Consensus 116 ~V~~d~~~~~~ 126 (186)
+.+.|+.-++.
T Consensus 84 ~L~NNAG~~C~ 94 (289)
T KOG1209|consen 84 LLYNNAGQSCT 94 (289)
T ss_pred EEEcCCCCCcc
Confidence 99998754433
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.37 E-value=0.58 Score=38.89 Aligned_cols=92 Identities=12% Similarity=0.090 Sum_probs=51.0
Q ss_pred hHHHHHHHcCC--CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc--------CCCCCeEEEEee
Q 038391 26 KLLQIQKQYKL--IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL--------HCDARVQTVSAD 95 (186)
Q Consensus 26 ~l~~~~~~~~~--~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~--------~~~~~~~~~~~d 95 (186)
-|.+++..-+. +.++-++||+|.|.-.+--.+..+.= +.+.+|-|+++..+..+ .....++...-.
T Consensus 63 ~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eY----gwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk 138 (292)
T COG3129 63 HLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEY----GWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQK 138 (292)
T ss_pred HHHHHHHhcCCCCCcCceEEEeeccCcccccccccceee----cceeecCccCHHHHHHHHHHHHcCcchhhheeEEecc
Confidence 34555554332 23456899999997654444433321 46899999999886542 222334444322
Q ss_pred ecCCChhhHhhhCCCCCCccEEEeCCCCC
Q 038391 96 VINLPSNQVRALSPKQKGFSVILSDMCPS 124 (186)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~D~V~~d~~~~ 124 (186)
-...-++ +.....+.||.++||++++
T Consensus 139 ~~~~if~---giig~nE~yd~tlCNPPFh 164 (292)
T COG3129 139 DSDAIFN---GIIGKNERYDATLCNPPFH 164 (292)
T ss_pred Ccccccc---ccccccceeeeEecCCCcc
Confidence 1111111 1112257999999998743
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.01 E-value=0.45 Score=40.73 Aligned_cols=107 Identities=19% Similarity=0.203 Sum_probs=71.0
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----------cCCCCCeEEEEeeecCCChhhHhhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----------LHCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----------~~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
...++||-+|-|-|+..+..+.+ .. =..++-+|+...-++. .....++.+.-+|-..+ ++..
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~~---ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~f----l~~~ 191 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-KS---VENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLF----LEDL 191 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-cc---ccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHH----HHHh
Confidence 44579999999999999999988 32 2478888888766433 23456788777765432 2222
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
+.+.||+|++|.+-+... . -.-..+..+..+.+ .||++|++++.-
T Consensus 192 --~~~~~dVii~dssdpvgp-a------~~lf~~~~~~~v~~------------------aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 192 --KENPFDVIITDSSDPVGP-A------CALFQKPYFGLVLD------------------ALKGDGVVCTQG 236 (337)
T ss_pred --ccCCceEEEEecCCccch-H------HHHHHHHHHHHHHH------------------hhCCCcEEEEec
Confidence 367999999976411111 1 11124466677777 899999998763
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.73 E-value=2.7 Score=35.40 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=39.7
Q ss_pred HcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 33 QYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 33 ~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
+...+..++..+|+|+|+...+..+.+.+.+.+.-.+.+.||++...+..
T Consensus 72 Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ 121 (321)
T COG4301 72 EIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRA 121 (321)
T ss_pred HHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHH
Confidence 33345568899999999999999999888764444589999999988654
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.62 E-value=3 Score=35.71 Aligned_cols=42 Identities=26% Similarity=0.173 Sum_probs=31.6
Q ss_pred CCCCCCCEEEEEcc-c-CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 35 KLIKPGSSVLDLGC-A-PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 35 ~~~~~~~~vLDlGc-G-~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
..+++|.+||=.|+ | .|..+..+++.. +.+|++++.++...+
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~-----G~~Vi~~~~~~~k~~ 197 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLH-----GCYVVGSAGSSQKVD 197 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc-----CCEEEEEcCCHHHHH
Confidence 34688999999998 3 466777777775 468999988876644
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=87.44 E-value=1.3 Score=38.54 Aligned_cols=43 Identities=23% Similarity=0.402 Sum_probs=29.0
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.+++|.+||-.|+|+ |..+..+++..+ ...|+++|.++...+.
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G----~~~vi~~~~~~~~~~~ 233 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRG----ASQIIGVDINPEKAEK 233 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC----CCeEEEECCCHHHHHH
Confidence 467899999998754 444455555552 1368999988876443
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=87.38 E-value=1.5 Score=37.32 Aligned_cols=42 Identities=12% Similarity=0.062 Sum_probs=29.9
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.+++|.+||-.|+|+ |..+..+++.+ +.+|++++.++...+.
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~-----G~~vi~~~~~~~~~~~ 204 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQ-----GATVHVMTRGAAARRL 204 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHC-----CCeEEEEeCChHHHHH
Confidence 468899999999754 34445555554 4689999998877543
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.28 E-value=8.2 Score=31.23 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=49.6
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh--hhHhhhCCCCCCccEE
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS--NQVRALSPKQKGFSVI 117 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~~D~V 117 (186)
+..||-.|+ +|+++..+++.+-.. +.+|++++-++..... ..++.+++.|+.+... ..+.......+.+|++
T Consensus 4 ~~~vlVtGa-sg~iG~~~a~~l~~~--g~~V~~~~r~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~l 77 (270)
T PRK06179 4 SKVALVTGA-SSGIGRATAEKLARA--GYRVFGTSRNPARAAP---IPGVELLELDVTDDASVQAAVDEVIARAGRIDVL 77 (270)
T ss_pred CCEEEEecC-CCHHHHHHHHHHHHC--CCEEEEEeCChhhccc---cCCCeeEEeecCCHHHHHHHHHHHHHhCCCCCEE
Confidence 457787784 677888888776542 6789999887655432 2357788899886531 1122221123578999
Q ss_pred EeCCC
Q 038391 118 LSDMC 122 (186)
Q Consensus 118 ~~d~~ 122 (186)
+.+..
T Consensus 78 i~~ag 82 (270)
T PRK06179 78 VNNAG 82 (270)
T ss_pred EECCC
Confidence 98764
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=87.28 E-value=1.4 Score=40.48 Aligned_cols=39 Identities=28% Similarity=0.300 Sum_probs=30.2
Q ss_pred CCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 39 PGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 39 ~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
++.+|+-+|||+ |.....++..+ +..|+.+|.++..++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-----GA~V~v~d~~~~rle~ 202 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-----GAIVRAFDTRPEVKEQ 202 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHH
Confidence 467999999998 56666677776 4679999999876543
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=87.28 E-value=1.2 Score=37.91 Aligned_cols=42 Identities=26% Similarity=0.509 Sum_probs=31.6
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.++++.+||-+|||+ |..+..+++.+ +.+|+++|.++..++.
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~-----G~~vi~~~~~~~~~~~ 205 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAM-----GAAVVAIDIDPEKLEM 205 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-----CCeEEEEcCCHHHHHH
Confidence 467899999999865 55666666665 4689999998877544
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=86.90 E-value=1.3 Score=40.12 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=48.4
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC---cC-CCCCeEEEEeeecCCChhhH---------hhh
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS---LH-CDARVQTVSADVINLPSNQV---------RAL 107 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~---~~-~~~~~~~~~~d~~~~~~~~l---------~~~ 107 (186)
-+++|+.||.|++..-+-+. +.-.|.++|+.+.+..- +. .......+..|+..+....+ ..+
T Consensus 89 ~~~iDLFsGiGGl~lGfe~a-----G~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~ 163 (467)
T PRK10458 89 FRFIDLFAGIGGIRRGFEAI-----GGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHI 163 (467)
T ss_pred ceEEEeCcCccHHHHHHHHc-----CCEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhh
Confidence 38999999999999999765 12367899999877543 11 12233445567766542111 000
Q ss_pred CCCCCCccEEEeCCCCC
Q 038391 108 SPKQKGFSVILSDMCPS 124 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~ 124 (186)
...-..+|+++...+|.
T Consensus 164 ~~~~p~~DvL~gGpPCQ 180 (467)
T PRK10458 164 RQHIPDHDVLLAGFPCQ 180 (467)
T ss_pred hccCCCCCEEEEcCCCC
Confidence 00113689998877664
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.90 E-value=1.8 Score=35.24 Aligned_cols=80 Identities=13% Similarity=0.202 Sum_probs=48.6
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC--cCCCCCeEEEEeeecCCCh--hhHhhhCCCCCCcc
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS--LHCDARVQTVSADVINLPS--NQVRALSPKQKGFS 115 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~--~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~~D 115 (186)
++++|-.|+ +|+++..+++.+... +.+|+.++.++..+.. .....++.+++.|+.+... ..+......-+.+|
T Consensus 6 ~k~vlItGa-s~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id 82 (261)
T PRK08265 6 GKVAIVTGG-ATLIGAAVARALVAA--GARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVD 82 (261)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 567777775 556787777776432 6799999988754322 1112457888899887531 11111111124789
Q ss_pred EEEeCCC
Q 038391 116 VILSDMC 122 (186)
Q Consensus 116 ~V~~d~~ 122 (186)
+++.+..
T Consensus 83 ~lv~~ag 89 (261)
T PRK08265 83 ILVNLAC 89 (261)
T ss_pred EEEECCC
Confidence 9988764
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.73 E-value=0.077 Score=41.68 Aligned_cols=39 Identities=23% Similarity=0.146 Sum_probs=27.4
Q ss_pred CCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 40 GSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 40 ~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
|.+||++|.|- |.-+..++-..+ ...|+-.|-++..+..
T Consensus 30 g~~ilelgggft~laglmia~~a~----~~~v~ltdgne~svrn 69 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAP----DSSVWLTDGNEESVRN 69 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecC----CceEEEecCCHHHHHH
Confidence 67899999995 555555555543 4688888888876543
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.62 E-value=1.7 Score=35.31 Aligned_cols=82 Identities=11% Similarity=0.058 Sum_probs=49.1
Q ss_pred CCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCC---CC-cCCCCCeEEEEeeecCCCh--hhHhhhCCCC
Q 038391 39 PGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKV---PS-LHCDARVQTVSADVINLPS--NQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i---~~-~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~ 111 (186)
+++.+|-.|+++ ++++..+++++-.. +.+|+.++.+.... .. ........+++.|+++... ..+......-
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~--G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 86 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRAL--GAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEW 86 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHc--CCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHc
Confidence 467889999988 48888888776532 67898888775431 11 1111234567788876531 1111111112
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
+.+|+++.+..
T Consensus 87 g~ld~lv~nAg 97 (258)
T PRK07533 87 GRLDFLLHSIA 97 (258)
T ss_pred CCCCEEEEcCc
Confidence 57999999864
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=86.59 E-value=4 Score=34.19 Aligned_cols=42 Identities=26% Similarity=0.227 Sum_probs=30.3
Q ss_pred CCCCCCCEEEEEccc--CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 35 KLIKPGSSVLDLGCA--PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG--~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
..+++|.+||=.|++ .|..+..+++.. +.+|++++-++...+
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~-----G~~Vi~~~~s~~~~~ 177 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLK-----GCKVVGAAGSDEKVA 177 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHc-----CCEEEEEeCCHHHHH
Confidence 346889999988853 466666677765 468999988776643
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=85.86 E-value=2.1 Score=36.36 Aligned_cols=42 Identities=24% Similarity=0.424 Sum_probs=29.3
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
.++++++||-.|+|+ |..+..+++.++ ...|+++|.++....
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G----~~~v~~~~~~~~~~~ 205 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRG----AGRIIAVGSRPNRVE 205 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC----CCeEEEEeCCHHHHH
Confidence 467889999988764 555566666653 236999998876643
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=85.60 E-value=2.3 Score=37.34 Aligned_cols=45 Identities=24% Similarity=0.217 Sum_probs=31.1
Q ss_pred CCCCCCEEEEEc-ccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 36 LIKPGSSVLDLG-CAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~~vLDlG-cG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.+++|.+||-+| +|+ |..+..+++..+. +..+|+++|.++.+++.
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~--g~~~Vi~~~~~~~r~~~ 218 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPI--GPSLLVVTDVNDERLAR 218 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhccc--CCceEEEEcCCHHHHHH
Confidence 357888999997 454 6666667776531 12379999999887554
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.51 E-value=3.1 Score=35.88 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=31.2
Q ss_pred CCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCC
Q 038391 35 KLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPS 82 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~ 82 (186)
..++++.+||-+|||+ |..+..+++.+ +. +|+++|.++..++.
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~-----G~~~Vi~~~~~~~~~~~ 225 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMA-----KASRIIAIDINPAKFEL 225 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCeEEEEcCCHHHHHH
Confidence 3467899999998865 55556666665 34 79999998877543
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=85.49 E-value=2.3 Score=37.36 Aligned_cols=43 Identities=28% Similarity=0.410 Sum_probs=27.8
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.++++++||-.|+|+ |..+..+++.++. ..|+.+|.++..++.
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga----~~vi~~d~~~~r~~~ 225 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLLGA----AVVIVGDLNPARLAQ 225 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----ceEEEeCCCHHHHHH
Confidence 367788888888765 5555666666531 346667887755443
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.20 E-value=3.1 Score=33.80 Aligned_cols=82 Identities=12% Similarity=0.110 Sum_probs=49.7
Q ss_pred CCCEEEEEccc-CChHHHHHHHHhCCCCCCCeEEEEeCCC--CCCCC--cCCCCCeEEEEeeecCCCh-h-hHhhhCCCC
Q 038391 39 PGSSVLDLGCA-PGAWLQVACQSLGPLDNGGSVVGIDVKK--VKVPS--LHCDARVQTVSADVINLPS-N-QVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG-~G~~~~~l~~~~~~~~~~~~v~gvDis~--~~i~~--~~~~~~~~~~~~d~~~~~~-~-~l~~~~~~~ 111 (186)
.++.+|-.|+| +++++..+++.+-. .+.+|+.++.+. ..+.. .....++.+++.|+.+... . .+.......
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~--~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 83 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQE--QGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREHV 83 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHH--CCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHHc
Confidence 35688989986 67888888877654 267899888764 22211 1111246677888876531 1 111111112
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
+.+|+++.+..
T Consensus 84 g~iD~li~nAG 94 (256)
T PRK07889 84 DGLDGVVHSIG 94 (256)
T ss_pred CCCcEEEEccc
Confidence 57999999764
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=85.19 E-value=2.7 Score=37.26 Aligned_cols=19 Identities=26% Similarity=0.428 Sum_probs=15.4
Q ss_pred CCEEEEEcccCChHHHHHH
Q 038391 40 GSSVLDLGCAPGAWLQVAC 58 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~ 58 (186)
.-.|+|+|||+|..+..+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~v 82 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHII 82 (386)
T ss_pred ceeEEEecCCCCccHHHHH
Confidence 4589999999998876554
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=84.84 E-value=3.4 Score=32.14 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=65.5
Q ss_pred cccCChHHHHHHHHhCCCCCCCeEEEE--eCCCCCCCCcC---------CCCCeEEEE-eeecCCChhhHhhhCCCCCCc
Q 038391 47 GCAPGAWLQVACQSLGPLDNGGSVVGI--DVKKVKVPSLH---------CDARVQTVS-ADVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 47 GcG~G~~~~~l~~~~~~~~~~~~v~gv--Dis~~~i~~~~---------~~~~~~~~~-~d~~~~~~~~l~~~~~~~~~~ 114 (186)
|=|.=-++..+++..+. ..++++. |-..+...+.. ...+++++. .|+..+.... ......|
T Consensus 4 GeGdfSFs~sL~~~~~~---~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~----~~~~~~F 76 (166)
T PF10354_consen 4 GEGDFSFSLSLARAFGS---ATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHF----RLKNQRF 76 (166)
T ss_pred eccchHHHHHHHHHcCC---CCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccc----cccCCcC
Confidence 33444566777777652 3455555 44433333211 122344443 3555543221 1135789
Q ss_pred cEEEeCCCCCCCCCc--ccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCCC
Q 038391 115 SVILSDMCPSVSGIT--TKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDA 185 (186)
Q Consensus 115 D~V~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~ 185 (186)
|.|+-|.|-...+.. ..+.....+++..++..+.. +|+++|.+.|++..++-+
T Consensus 77 DrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~------------------~L~~~G~IhVTl~~~~py 131 (166)
T PF10354_consen 77 DRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQ------------------LLKPDGEIHVTLKDGQPY 131 (166)
T ss_pred CEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHH------------------hcCCCCEEEEEeCCCCCC
Confidence 999998753221111 12223445677788888887 999999999999998753
|
|
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=84.01 E-value=2.9 Score=35.96 Aligned_cols=42 Identities=26% Similarity=0.472 Sum_probs=29.7
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~ 82 (186)
.++++.+||-+|+|+ |..+..+++.+ +. +|+++|.++..++.
T Consensus 183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~-----G~~~vi~~~~~~~~~~~ 226 (368)
T cd08300 183 KVEPGSTVAVFGLGAVGLAVIQGAKAA-----GASRIIGIDINPDKFEL 226 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCeEEEEeCCHHHHHH
Confidence 467899999998754 44455555655 35 79999999877543
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.60 E-value=16 Score=29.50 Aligned_cols=74 Identities=15% Similarity=0.211 Sum_probs=46.9
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh--hhHhhhCCCCCCccEE
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS--NQVRALSPKQKGFSVI 117 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~~D~V 117 (186)
++++|-.|+ +|+++..+++++.. .+.+|+.++.++... .++.+++.|+.+... ..+......-+.+|++
T Consensus 6 gk~vlItGa-s~gIG~~ia~~l~~--~G~~Vi~~~r~~~~~------~~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~l 76 (258)
T PRK06398 6 DKVAIVTGG-SQGIGKAVVNRLKE--EGSNVINFDIKEPSY------NDVDYFKVDVSNKEQVIKGIDYVISKYGRIDIL 76 (258)
T ss_pred CCEEEEECC-CchHHHHHHHHHHH--CCCeEEEEeCCcccc------CceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 567888885 56677777777643 267999988765432 257788888876531 1122221112479999
Q ss_pred EeCCC
Q 038391 118 LSDMC 122 (186)
Q Consensus 118 ~~d~~ 122 (186)
+.+..
T Consensus 77 i~~Ag 81 (258)
T PRK06398 77 VNNAG 81 (258)
T ss_pred EECCC
Confidence 98764
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.60 E-value=6.1 Score=32.18 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=49.1
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh--hhHhhhCCCCCCccEE
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS--NQVRALSPKQKGFSVI 117 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~~D~V 117 (186)
++.+|=.|+ +|+++..+++.+-. .+.+|++++-++..+.... ..++.++..|+.+... ..+.......+.+|++
T Consensus 3 ~k~vlItGa-sggiG~~la~~l~~--~G~~V~~~~r~~~~l~~~~-~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~l 78 (273)
T PRK06182 3 KKVALVTGA-SSGIGKATARRLAA--QGYTVYGAARRVDKMEDLA-SLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVL 78 (273)
T ss_pred CCEEEEECC-CChHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHH-hCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 457777775 56688888877643 2679999987766543211 1247788899876531 1122221123478999
Q ss_pred EeCCC
Q 038391 118 LSDMC 122 (186)
Q Consensus 118 ~~d~~ 122 (186)
+.+..
T Consensus 79 i~~ag 83 (273)
T PRK06182 79 VNNAG 83 (273)
T ss_pred EECCC
Confidence 98764
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=83.38 E-value=1.7 Score=38.20 Aligned_cols=96 Identities=24% Similarity=0.226 Sum_probs=61.8
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
..+|+|--+|+|.=++-++...+. .+|+..|++|..++.. +.......+..|+..+-.. ....
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~----~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~-------~~~~ 121 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGV----VKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHE-------LHRA 121 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCc----cEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHh-------cCCC
Confidence 669999999999999888877542 4899999999885441 1122333333444322111 2478
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
||+|=.|+ -| .+ .-+++.+.+ .++.+|.|.++-
T Consensus 122 fd~IDiDP----FG--SP---------aPFlDaA~~------------------s~~~~G~l~vTA 154 (380)
T COG1867 122 FDVIDIDP----FG--SP---------APFLDAALR------------------SVRRGGLLCVTA 154 (380)
T ss_pred ccEEecCC----CC--CC---------chHHHHHHH------------------HhhcCCEEEEEe
Confidence 99997665 12 11 135555555 677799998864
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=82.91 E-value=4.3 Score=34.04 Aligned_cols=38 Identities=29% Similarity=0.517 Sum_probs=27.0
Q ss_pred CCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCC
Q 038391 39 PGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVKVP 81 (186)
Q Consensus 39 ~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~ 81 (186)
++.+||-.|||. |..+..+++.+ +. +|++++.++.+..
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~-----G~~~v~~~~~s~~~~~ 204 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA-----GAAEIVATDLADAPLA 204 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-----CCcEEEEECCCHHHHH
Confidence 788999888764 55666666665 34 7999988776543
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=82.67 E-value=5.5 Score=33.89 Aligned_cols=41 Identities=24% Similarity=0.400 Sum_probs=26.8
Q ss_pred CCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCCC
Q 038391 35 KLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVKV 80 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i 80 (186)
...+++.+||=.|+|. |..+..+++.+ +. +|++++.++...
T Consensus 173 ~~~~~g~~vlI~g~g~vG~~~~~lak~~-----G~~~v~~~~~~~~~~ 215 (361)
T cd08231 173 GPVGAGDTVVVQGAGPLGLYAVAAAKLA-----GARRVIVIDGSPERL 215 (361)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCeEEEEcCCHHHH
Confidence 3345788898887643 44445555554 45 899998777653
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.59 E-value=5.9 Score=32.22 Aligned_cols=81 Identities=19% Similarity=0.206 Sum_probs=48.7
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCCh--hhHhhhCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPS--NQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~ 111 (186)
+++++|-.| |+|+++..+++.+.. .+.+|+.++.++..+.. .....++.++..|+++... ..+.+.....
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 84 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFAR--AGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEF 84 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 466788777 567788877776643 26789999987654322 1112356677888876431 1122221112
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
+++|+++.+..
T Consensus 85 ~~iD~vi~~ag 95 (264)
T PRK07576 85 GPIDVLVSGAA 95 (264)
T ss_pred CCCCEEEECCC
Confidence 47899998753
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=82.56 E-value=4.6 Score=35.10 Aligned_cols=77 Identities=14% Similarity=0.264 Sum_probs=49.4
Q ss_pred CCCCCEEEEEcccCChHHHHH-HHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEe-eecCCChhhHhhhCCCCCCc
Q 038391 37 IKPGSSVLDLGCAPGAWLQVA-CQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSA-DVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l-~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~-d~~~~~~~~l~~~~~~~~~~ 114 (186)
+++|.++.-+|+|.=+++... ++..+ .++++|||+++...+.++...-..++.. |......+.+.+++ ++.+
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~G----AsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmT--dgGv 263 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAAG----ASRIIGVDINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEMT--DGGV 263 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhcC----cccEEEEecCHHHHHHHHhcCcceecChhhccccHHHHHHHHh--cCCc
Confidence 588999999999975555444 44443 4799999999999777554443444432 33332234555665 4677
Q ss_pred cEEEe
Q 038391 115 SVILS 119 (186)
Q Consensus 115 D~V~~ 119 (186)
|.-+-
T Consensus 264 DysfE 268 (375)
T KOG0022|consen 264 DYSFE 268 (375)
T ss_pred eEEEE
Confidence 87764
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=82.37 E-value=1 Score=31.92 Aligned_cols=65 Identities=17% Similarity=0.145 Sum_probs=43.3
Q ss_pred ccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEe
Q 038391 48 CAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILS 119 (186)
Q Consensus 48 cG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~ 119 (186)
||.|..+..+++.+.. .+..|+.+|.++..+...... .+.++.+|..+.. .+.+. .-.+++.|++
T Consensus 4 ~G~g~~~~~i~~~L~~--~~~~vvvid~d~~~~~~~~~~-~~~~i~gd~~~~~--~l~~a--~i~~a~~vv~ 68 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKE--GGIDVVVIDRDPERVEELREE-GVEVIYGDATDPE--VLERA--GIEKADAVVI 68 (116)
T ss_dssp ES-SHHHHHHHHHHHH--TTSEEEEEESSHHHHHHHHHT-TSEEEES-TTSHH--HHHHT--TGGCESEEEE
T ss_pred EcCCHHHHHHHHHHHh--CCCEEEEEECCcHHHHHHHhc-ccccccccchhhh--HHhhc--CccccCEEEE
Confidence 6778899999988765 134899999999886542222 2778899988654 23222 1257888887
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.19 E-value=7.9 Score=31.50 Aligned_cols=82 Identities=12% Similarity=0.031 Sum_probs=50.3
Q ss_pred CCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCC---CCC---cCCCCCeEEEEeeecCCCh--hhHhhhCC
Q 038391 39 PGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVK---VPS---LHCDARVQTVSADVINLPS--NQVRALSP 109 (186)
Q Consensus 39 ~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~---i~~---~~~~~~~~~~~~d~~~~~~--~~l~~~~~ 109 (186)
.++.+|-.|+++ ++++..+++.+-. .+.+|+.++.+... ++. .....++.+++.|+.+... ..+.....
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~--~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 83 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHN--AGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKE 83 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHH--CCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHH
Confidence 467899999884 7889888888754 26788888654321 211 1112457778889887531 12222211
Q ss_pred CCCCccEEEeCCC
Q 038391 110 KQKGFSVILSDMC 122 (186)
Q Consensus 110 ~~~~~D~V~~d~~ 122 (186)
.-+++|+++.+..
T Consensus 84 ~~g~ld~lv~nag 96 (257)
T PRK08594 84 EVGVIHGVAHCIA 96 (257)
T ss_pred hCCCccEEEECcc
Confidence 1257999988753
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.14 E-value=3.5 Score=35.36 Aligned_cols=42 Identities=24% Similarity=0.477 Sum_probs=29.6
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~ 82 (186)
.++++.+||-+|+|+ |..+..+++.+ +. +|+++|.++...+.
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~-----G~~~Vi~~~~~~~~~~~ 224 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAKIA-----GASRIIGVDINEDKFEK 224 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCeEEEEeCCHHHHHH
Confidence 467899999998754 44555566665 34 79999988766443
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=81.54 E-value=2.5 Score=34.27 Aligned_cols=82 Identities=16% Similarity=0.145 Sum_probs=49.4
Q ss_pred CCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC--cCCCCCeEEEEeeecCCCh--hhHhhhCCCCCC
Q 038391 39 PGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS--LHCDARVQTVSADVINLPS--NQVRALSPKQKG 113 (186)
Q Consensus 39 ~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~--~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~ 113 (186)
.++.+|-.|+++ ++++..+++.+-. .|.+|+.++.+...... .....++.+++.|+++... ..++.....-+.
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~--~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 83 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKD--QGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAFATIKERVGK 83 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHH--CCCEEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 467888888875 6788888887754 26789988765321110 1112356778888876531 111222111257
Q ss_pred ccEEEeCCC
Q 038391 114 FSVILSDMC 122 (186)
Q Consensus 114 ~D~V~~d~~ 122 (186)
+|+++.+..
T Consensus 84 iD~lv~nAg 92 (252)
T PRK06079 84 IDGIVHAIA 92 (252)
T ss_pred CCEEEEccc
Confidence 999998764
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.92 E-value=5.9 Score=31.33 Aligned_cols=77 Identities=19% Similarity=0.200 Sum_probs=50.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEE
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVI 117 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V 117 (186)
.+++||=.| |+|+.+..+++.+... +. +|+.++-++..+.. ...++.++..|+.+.. .+..+...-+.+|.|
T Consensus 5 ~~~~vlItG-gsg~iG~~la~~l~~~--G~~~V~~~~r~~~~~~~--~~~~~~~~~~D~~~~~--~~~~~~~~~~~id~v 77 (238)
T PRK08264 5 KGKVVLVTG-ANRGIGRAFVEQLLAR--GAAKVYAAARDPESVTD--LGPRVVPLQLDVTDPA--SVAAAAEAASDVTIL 77 (238)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHC--CcccEEEEecChhhhhh--cCCceEEEEecCCCHH--HHHHHHHhcCCCCEE
Confidence 356788888 4777888888776542 55 89999887765443 3346888889987653 222222112468999
Q ss_pred EeCCC
Q 038391 118 LSDMC 122 (186)
Q Consensus 118 ~~d~~ 122 (186)
+.+..
T Consensus 78 i~~ag 82 (238)
T PRK08264 78 VNNAG 82 (238)
T ss_pred EECCC
Confidence 88764
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.79 E-value=11 Score=29.75 Aligned_cols=81 Identities=10% Similarity=0.063 Sum_probs=49.9
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCCh--hhHhhhCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPS--NQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~ 111 (186)
..+++|-.|+ +|+++..+++.+... +.+|+.++-++..... .....++.++..|+++... ..++......
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKA--GWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4567888885 678888888776542 5699999987654321 1123467788899887531 1112111112
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
++.|.++.+..
T Consensus 82 ~~id~lv~~ag 92 (241)
T PRK07454 82 GCPDVLINNAG 92 (241)
T ss_pred CCCCEEEECCC
Confidence 46899988653
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=80.60 E-value=7.2 Score=32.77 Aligned_cols=39 Identities=33% Similarity=0.394 Sum_probs=28.0
Q ss_pred CCCC--CEEEEEcc--cCChHHHHHHHHhCCCCCCC-eEEEEeCCCCCC
Q 038391 37 IKPG--SSVLDLGC--APGAWLQVACQSLGPLDNGG-SVVGIDVKKVKV 80 (186)
Q Consensus 37 ~~~~--~~vLDlGc--G~G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i 80 (186)
++++ .+||=.|+ |.|..+..+++.+ +. +|++++-+++..
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~-----G~~~Vi~~~~s~~~~ 193 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLL-----GCSRVVGICGSDEKC 193 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHc-----CCCEEEEEcCCHHHH
Confidence 5655 89999987 3466666677775 45 799998887654
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.55 E-value=0.79 Score=35.84 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=34.5
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
.++++|+|++ -|...+..- +....+++++.+ +|||||.|-|.+-..
T Consensus 44 ~dns~d~iya--------eHvlEHlt~-~Eg~~alkechr------------------~Lrp~G~LriAvPdl 89 (185)
T COG4627 44 EDNSVDAIYA--------EHVLEHLTY-DEGTSALKECHR------------------FLRPGGKLRIAVPDL 89 (185)
T ss_pred CCcchHHHHH--------HHHHHHHhH-HHHHHHHHHHHH------------------HhCcCcEEEEEcCCc
Confidence 4689999987 455554333 445578888998 999999999987654
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.33 E-value=11 Score=30.18 Aligned_cols=78 Identities=14% Similarity=0.176 Sum_probs=47.6
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc---CCCCCeEEEEeeecCCCh--hhHhhhCCC-CCCcc
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL---HCDARVQTVSADVINLPS--NQVRALSPK-QKGFS 115 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~---~~~~~~~~~~~d~~~~~~--~~l~~~~~~-~~~~D 115 (186)
++|-.|++ |+++..+++.+.. .+.+|+.++.++..+... ....++.+++.|+.+... ..+.+.... .+++|
T Consensus 3 ~vlItGas-g~iG~~la~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id 79 (260)
T PRK08267 3 SIFITGAA-SGIGRATALLFAA--EGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLD 79 (260)
T ss_pred EEEEeCCC-chHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 56667755 6677777776643 267999998776654321 113468888999987541 122222111 35789
Q ss_pred EEEeCCC
Q 038391 116 VILSDMC 122 (186)
Q Consensus 116 ~V~~d~~ 122 (186)
.++.+..
T Consensus 80 ~vi~~ag 86 (260)
T PRK08267 80 VLFNNAG 86 (260)
T ss_pred EEEECCC
Confidence 9998764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 186 | ||||
| 2nyu_A | 196 | Crystal Structure Of Human Ftsj Homolog 2 (E.Coli) | 1e-11 | ||
| 1eiz_A | 180 | Ftsj Rna Methyltransferase Complexed With S- Adenos | 6e-10 | ||
| 3dou_A | 191 | Crystal Structure Of Methyltransferase Involved In | 8e-10 | ||
| 2plw_A | 201 | Crystal Structure Of A Ribosomal Rna Methyltransfer | 2e-07 |
| >pdb|2NYU|A Chain A, Crystal Structure Of Human Ftsj Homolog 2 (E.Coli) Protein In Complex With S-Adenosylmethionine Length = 196 | Back alignment and structure |
|
| >pdb|1EIZ|A Chain A, Ftsj Rna Methyltransferase Complexed With S- Adenosylmethionine Length = 180 | Back alignment and structure |
|
| >pdb|3DOU|A Chain A, Crystal Structure Of Methyltransferase Involved In Cell Division From Thermoplasma Volcanicum Gss1 Length = 191 | Back alignment and structure |
|
| >pdb|2PLW|A Chain A, Crystal Structure Of A Ribosomal Rna Methyltransferase, Putative, From Plasmodium Falciparum (Pf13_0052) Length = 201 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* Length = 180 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 2e-38
Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 34/171 (19%)
Query: 18 GYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKK 77
G +R+ FKL +IQ+ KL KPG +V+DLG APG W Q +G G ++ D+
Sbjct: 1 GLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGG---KGRIIACDLLP 57
Query: 78 VK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDA 133
+ V L D R + V ++ + V++SDM P++SG D
Sbjct: 58 MDPIVGVDFLQGDFRDELVMKALLERVGD---------SKVQVVMSDMAPNMSGTPAVDI 108
Query: 134 ALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
++ L A+++ VL PGG V+K+ + +
Sbjct: 109 PRAMYLVELALEMCR------------------DVLAPGGSFVVKVFQGEG 141
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} Length = 201 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 6e-38
Identities = 35/178 (19%), Positives = 62/178 (34%), Gaps = 32/178 (17%)
Query: 19 YVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKV 78
Y +R+A+KL+++ +Y +K +LD+GC PG+W QV + ++GID K +
Sbjct: 2 YRSRAAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYK--NKIIGIDKKIM 59
Query: 79 K----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFS--------VILSDMCPSVS 126
V + + ++ + + S K +ILSD
Sbjct: 60 DPIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCI 119
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G D S EL + + GG ++K+
Sbjct: 120 GNKIDDHLNSCELTLSITHFME------------------QYINIGGTYIVKMYLGSQ 159
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} Length = 191 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 3e-37
Identities = 38/172 (22%), Positives = 81/172 (47%), Gaps = 34/172 (19%)
Query: 17 LGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVK 76
L +R+AFKL + +Y++++ G +V+++G +PG W QV ++ ID++
Sbjct: 3 LQLRSRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNS------LARKIISIDLQ 56
Query: 77 KVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKD 132
+++ V + CD +T+ D+ + + ++SD VSGI ++D
Sbjct: 57 EMEEIAGVRFIRCDIFKETIFDDIDRALREE------GIEKVDDVVSDAMAKVSGIPSRD 110
Query: 133 AALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
A+S ++G R +++A+ L+ GG++++K +
Sbjct: 111 HAVSYQIGQRVMEIAV------------------RYLRNGGNVLLKQFQGDM 144
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 9e-35
Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 31/173 (17%)
Query: 19 YVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG-----PLDNGGSVVGI 73
Y +RSAFKLL++ +++++++PG VLD G APGAW QVA Q + P G V+G+
Sbjct: 2 YRSRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGV 61
Query: 74 DVKKVKVPSLHCDARVQTVSADVINLPS--NQVRALSPKQKGFSVILSDMCPSVSGITTK 131
D+ + P AD + P ++ + P ++ VILSDM P+ +G
Sbjct: 62 DLLHIF-PLEGATFLCP---AD-VTDPRTSQRILEVLPGRR-ADVILSDMAPNATGFRDL 115
Query: 132 DAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
D + L + + + +L+PGG + K
Sbjct: 116 DHDRLISLCLTLLSVTP------------------DILQPGGTFLCKTWAGSQ 150
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* Length = 277 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 5e-27
Identities = 32/176 (18%), Positives = 55/176 (31%), Gaps = 35/176 (19%)
Query: 13 EAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVG 72
+ V+R KL ++ +K V+DLGC G W A G +G
Sbjct: 49 KVDTGVAVSRGTAKLRWFHERG-YVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLG 107
Query: 73 IDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVSGITTK 131
D + + VQ++ ++I + L P + +L D+ S S
Sbjct: 108 RDGHEKPMN-------VQSLGWNIITFKDKTDIHRLEPVK--CDTLLCDIGESSS----- 153
Query: 132 DAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPG-GHLVIKLLESQDAQ 186
+ E +R +D L G + +K+L
Sbjct: 154 SSVTEGERTVRVLDTV------------------EKWLACGVDNFCVKVLAPYMPD 191
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* Length = 300 | Back alignment and structure |
|---|
Score = 94.6 bits (235), Expect = 7e-24
Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 33/169 (19%)
Query: 13 EAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVG 72
V+R A K+ + ++ L G VLDLGC G W A + G +G
Sbjct: 56 RTDVGISVSRGAAKIRWLHERGYLRITGR-VLDLGCGRGGWSYYAAAQKEVMSVKGYTLG 114
Query: 73 IDVKKVKVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMCPSVSGITTK 131
I+ + + +QT+ +++ V + + +L D+ S S
Sbjct: 115 IEGHEKPIH-------MQTLGWNIVKFKDKSNVFTMPTEP--SDTLLCDIGESSSNP-LV 164
Query: 132 DAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
+ + M+ ++ + + +K+L
Sbjct: 165 ERDRT----MKVLENF-----------------ERWKHVNTENFCVKVL 192
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* Length = 375 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 7e-12
Identities = 22/122 (18%), Positives = 36/122 (29%), Gaps = 22/122 (18%)
Query: 7 PDFFYREAQRLGYVARSAFKLLQ-------IQKQYKLIKPGSSVLDLGCAPGAWLQVACQ 59
R +RS KL + + + + G +DLG PG W +
Sbjct: 172 YMGIPRLKFPADAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVK 231
Query: 60 SLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILS 119
V +D + SL +V + D P + S ++
Sbjct: 232 ------RNMWVYSVDNGPMA-QSLMDTGQVTWLRED--------GFKFRPTRSNISWMVC 276
Query: 120 DM 121
DM
Sbjct: 277 DM 278
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* Length = 305 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 2e-09
Identities = 29/164 (17%), Positives = 54/164 (32%), Gaps = 34/164 (20%)
Query: 18 GYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKK 77
V+R + KL ++ L+ P V+DLGC G W + G G +
Sbjct: 62 HAVSRGSAKLRWFVERN-LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE 120
Query: 78 VKVPSLHCDARVQTVSADVINLPSNQ-VRALSPKQKGFSVILSDMCPSVSGITTKDAALS 136
+P + T +++ L S V + P++ +L D+ S + +
Sbjct: 121 EPIP-------MSTYGWNLVRLQSGVDVFFIPPER--CDTLLCDIGESSP-----NPTVE 166
Query: 137 VELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
+R ++L L +K+L
Sbjct: 167 AGRTLRVLNLV------------------ENWLSNNTQFCVKVL 192
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* Length = 269 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 4e-08
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 11/110 (10%)
Query: 19 YVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKV 78
V+R KL + ++ ++P V+DLGC G W A + G G +
Sbjct: 54 PVSRGTAKLRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEE 112
Query: 79 KVPSLHCDARVQTVSADVINLPSNQ-VRALSPKQKGFSVILSDMCPSVSG 127
+ +Q+ +++ + S V + +L D+ S
Sbjct: 113 PML-------MQSYGWNIVTMKSGVDVFYKPSEI--SDTLLCDIGESSPS 153
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} Length = 282 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 5e-08
Identities = 29/136 (21%), Positives = 47/136 (34%), Gaps = 13/136 (9%)
Query: 19 YVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKV 78
V+R + KL ++++ +KP V+DLGC G W A L N V+ +
Sbjct: 71 AVSRGSAKLRWMEERG-YVKPTGIVVDLGCGRGGWSYYAAS----LKNVKKVMAFTLGV- 124
Query: 79 KVPSLHCDARVQTVSADVINLPSNQ-VRALSPKQKGFSVILSDMCPSVSGITTKDA-ALS 136
T+ ++I V + +L D+ S I ++ L
Sbjct: 125 --QGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIP--GDTLLCDIGESSPSIAVEEQRTLR 180
Query: 137 VELGMRAVDLALGPAA 152
V L L G
Sbjct: 181 V-LNCAKQWLQEGNYT 195
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* Length = 276 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 8e-08
Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 11/110 (10%)
Query: 19 YVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKV 78
V+R KL I ++ ++ +V+DLGC G+W A N V +
Sbjct: 63 AVSRGTAKLAWIDERG-GVELKGTVVDLGCGRGSWSYYAAS----QPNVREVKAYTLGT- 116
Query: 79 KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMCPSVSG 127
V+T ++I S V + P Q +L D+ S
Sbjct: 117 --SGHEKPRLVETFGWNLITFKSKVDVTKMEPFQ--ADTVLCDIGESNPT 162
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} Length = 321 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 8e-08
Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 11/116 (9%)
Query: 19 YVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKV 78
V+R KL + ++ ++P V+DLGC G W V G
Sbjct: 75 PVSRGTAKLRWLVERR-FLEPVGKVIDLGCGRGGWCYYMAT----QKRVQEVRGYTKGG- 128
Query: 79 KVPSLHCDARVQTVSADVINLPSNQ-VRALSPKQKGFSVILSDMCPSVSGITTKDA 133
P VQ+ +++ + S V + +L D+ S S ++
Sbjct: 129 --PGHEEPQLVQSYGWNIVTMKSGVDVFYRPSEC--CDTLLCDIGESSSSAEVEEH 180
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} PDB: 3p97_A* 2xbm_A* 3evg_A* Length = 267 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 1e-07
Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 16/123 (13%)
Query: 11 YREAQRLG-----YVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLD 65
+E + G V+R + KL ++ ++ P V+DLGC G W +
Sbjct: 46 AKEGLKRGETTHHAVSRGSAKLQWFVERN-MVIPEGRVIDLGCGRGGWSYYCAGLKKVTE 104
Query: 66 NGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ-VRALSPKQKGFSVILSDMCPS 124
G G + VP + T +++ L S + V L P++ +L D+ S
Sbjct: 105 VRGYTKGGPGHEEPVP-------MSTYGWNIVKLMSGKDVFYLPPEK--CDTLLCDIGES 155
Query: 125 VSG 127
Sbjct: 156 SPS 158
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} Length = 265 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 2e-06
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 19 YVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGID 74
V+R KL ++++ ++ V+DLGC G W A +D +G+
Sbjct: 55 SVSRGTAKLAWMEER-GYVELTGRVVDLGCGRGGWSYYAASRPHVMDVRAYTLGVG 109
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 2e-06
Identities = 16/86 (18%), Positives = 25/86 (29%), Gaps = 11/86 (12%)
Query: 22 RSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKV--- 78
R + Q + ++PG V + C + L S P G +VGID
Sbjct: 102 RERHGHFRRALQ-RHLRPGCVVASVPCGWMSELLALDYSACP---GVQLVGIDYDPEALD 157
Query: 79 ----KVPSLHCDARVQTVSADVINLP 100
++ D L
Sbjct: 158 GATRLAAGHALAGQITLHRQDAWKLD 183
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 3e-06
Identities = 12/73 (16%), Positives = 19/73 (26%), Gaps = 16/73 (21%)
Query: 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDV---------KKVKVPSLHCDA 87
I ++D GC G V L G GID + +
Sbjct: 20 ITKPVHIVDYGCGYGYLGLVLMPLLPE---GSKYTGIDSGETLLAEARELFR----LLPY 72
Query: 88 RVQTVSADVINLP 100
+ + D +
Sbjct: 73 DSEFLEGDATEIE 85
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 4e-06
Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 17/111 (15%)
Query: 10 FYREAQRLGYVARSAFKLLQIQKQY-KLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGG 68
+Y + +R K ++Y K VLD+GC G +L++ + G
Sbjct: 13 YYFLFEEKFRGSRELVK--ARLRRYIPYFKGCRRVLDIGCGRGEFLELC------KEEGI 64
Query: 69 SVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILS 119
+G+D+ + + C+ + V +D I + K ++
Sbjct: 65 ESIGVDINEDMI--KFCEGKFNVVKSDAIEYLKSL------PDKYLDGVMI 107
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 8e-06
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 12/75 (16%)
Query: 32 KQYKLIKPGSSVLDLGCAPG-AWLQVACQSLGPLDNGGSVVGID-----VKKVKVPSLHC 85
K +VLD G L + + +G GI+ +KK + S
Sbjct: 16 KYCNESNLDKTVLDCGAGGDLPPLSIFVE------DGYKTYGIEISDLQLKKAENFSREN 69
Query: 86 DARVQTVSADVINLP 100
+ ++ D+ LP
Sbjct: 70 NFKLNISKGDIRKLP 84
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 9e-06
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 19/98 (19%)
Query: 12 REAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVV 71
REA RL A + KLL PG+ VL+ GC GA + + P +
Sbjct: 13 REALRLSEQAETLEKLLHHDTV---YPPGAKVLEAGCGIGAQTVILAK-NNP---DAEIT 65
Query: 72 GIDV---------KKVKVPSLHCDARVQTVSADVINLP 100
ID+ + + + V+ + A++ +LP
Sbjct: 66 SIDISPESLEKARENTEKNGI---KNVKFLQANIFSLP 100
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 1e-05
Identities = 29/142 (20%), Positives = 50/142 (35%), Gaps = 20/142 (14%)
Query: 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADV 96
G++VLDLGC G + +A + +G G V+G+D+ + + AR
Sbjct: 81 SLEGATVLDLGCGTGRDVYLASKLVGE---HGKVIGVDM----LDNQLEVARKYVEYHAE 133
Query: 97 INLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASP 156
S + + GF L+ P ++ D +S + + + A
Sbjct: 134 KFFGSPSRSNVRFLK-GFIENLATAEPEGVPDSSVDIVISNCVCNLSTNK---LALFKEI 189
Query: 157 VNNSDSSTDSGVLKPGGHLVIK 178
VL+ GG L
Sbjct: 190 HR---------VLRDGGELYFS 202
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 1e-05
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDV 75
+KPG +L++GC G V +G G V GID+
Sbjct: 41 VKPGEKILEIGCGQGDLSAVLADQVGS---SGHVTGIDI 76
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-05
Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 14/98 (14%)
Query: 10 FYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGS 69
+++ +R G + A + + + + + D+GC G + G
Sbjct: 19 YFKLLKRQGPGSPEATR--KAVSFINELTDDAKIADIGCGTGGQTLFLADYV-----KGQ 71
Query: 70 VVGIDVKKV-------KVPSLHCDARVQTVSADVINLP 100
+ GID+ +C RV+ ++ + NLP
Sbjct: 72 ITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP 109
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-05
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Query: 35 KLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGID-----VKKVKVPSLHCDARV 89
K +K VLDL C G + S D G VVG+D ++K + + ++ V
Sbjct: 34 KYMKKRGKVLDLACGVGGF------SFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNV 87
Query: 90 QTVSADVINLP 100
+ + D L
Sbjct: 88 EFIVGDARKLS 98
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-05
Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 12/71 (16%)
Query: 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKV-------KVPSLHCDARV 89
+ S + D+GC G V + G V G+D RV
Sbjct: 44 LTEKSLIADIGCGTGGQTMVLAGHV-----TGQVTGLDFLSGFIDIFNRNARQSGLQNRV 98
Query: 90 QTVSADVINLP 100
+ + +LP
Sbjct: 99 TGIVGSMDDLP 109
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 3e-05
Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 37/148 (25%)
Query: 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVK-------KVKVPSLHCDARV 89
+K G +V+D C G +G G V G D++ K+ L+ RV
Sbjct: 20 VKEGDTVVDATCGNGNDTAFLASLVGE---NGRVFGFDIQDKAIANTTKKLTDLNLIDRV 76
Query: 90 QTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALG 149
+ N+ ++ ++ SG + E ++A+ A+
Sbjct: 77 TLIKDGHQNMD-------KYIDCPVKAVMFNLGYLPSG--DHSISTRPETTIQALSKAM- 126
Query: 150 PAALASPVNNSDSSTDSGVLKPGGHLVI 177
+L GG + +
Sbjct: 127 -----------------ELLVTGGIITV 137
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 4e-05
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 15/96 (15%)
Query: 10 FYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGS 69
F+ + + + S + I + +K + VLD+GC G G
Sbjct: 26 FWNQNSQEMW--DSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKL------SRTGYK 77
Query: 70 VVGID-----VKKVKVPSLHCDARVQTVSADVINLP 100
VG+D ++K K + + D+ +LP
Sbjct: 78 AVGVDISEVMIQKGK--ERGEGPDLSFIKGDLSSLP 111
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 6e-05
Identities = 33/154 (21%), Positives = 47/154 (30%), Gaps = 64/154 (41%)
Query: 35 KLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDV---------KKVKVPSLHC 85
+ +K VLDLG G W SL + G VV +D +K +
Sbjct: 50 EYLKNPCRVLDLGGGTGKW------SLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEA 103
Query: 86 DARVQTVSADVINLP--SNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRA 143
A +LP S F +L+ + +S + KD A S E+ R
Sbjct: 104 KAE---------DLPFPSGA----------FEAVLA-LGDVLSYVENKDKAFS-EI-RR- 140
Query: 144 VDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177
VL P G L+
Sbjct: 141 ------------------------VLVPDGLLIA 150
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 6e-05
Identities = 30/119 (25%), Positives = 42/119 (35%), Gaps = 14/119 (11%)
Query: 10 FYREAQRLGYVARSAFKLLQIQK-----QYKLI----KPGSSVLDLGCAPGAWLQVACQS 60
Y + G +R K + I+ + LI K G SVLDLGC G L ++
Sbjct: 26 HYNSIRERGRESRQRSKTINIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERA 85
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILS 119
G G+D+ +V + AR V + K F VI S
Sbjct: 86 -----GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISS 139
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 1e-04
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 15/61 (24%)
Query: 15 QRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGID 74
QRLG V + V+DLGC G L L + + G+D
Sbjct: 16 QRLGTVVAVLKSV-----------NAKKVIDLGCGEGNLL----SLLLKDKSFEQITGVD 60
Query: 75 V 75
V
Sbjct: 61 V 61
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 3e-04
Identities = 31/156 (19%), Positives = 44/156 (28%), Gaps = 64/156 (41%)
Query: 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDAR-------- 88
+K G +VLD+G G +L + +G G V IDV + A
Sbjct: 35 LKEGMTVLDVGTGAGFYLPYLSKMVGE---KGKVYAIDV----QEEMVNYAWEKVNKLGL 87
Query: 89 --VQTVSADV--INLPSNQVRALSPKQKGFSVILSDMCPSVSGI---TTKDAALSVELGM 141
V+ + ++ I LP N V D + L EL
Sbjct: 88 KNVEVLKSEENKIPLPDNTV---------------DFIFMAFTFHELSEPLKFLE-EL-K 130
Query: 142 RAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177
R V KP +L I
Sbjct: 131 R-------------------------VAKPFAYLAI 141
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 38.5 bits (90), Expect = 3e-04
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 20/75 (26%)
Query: 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGID-----VKKVKVPSLHCDARVQT 91
++D GC G + + L+ + ID +K+VK + +
Sbjct: 15 EGKKGVIVDYGCGNGFYCKYL------LEFATKLYCIDINVIALKEVK-------EKFDS 61
Query: 92 V--SADVINLPSNQV 104
V +D +P N V
Sbjct: 62 VITLSDPKEIPDNSV 76
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 39.5 bits (91), Expect = 3e-04
Identities = 25/161 (15%), Positives = 38/161 (23%), Gaps = 59/161 (36%)
Query: 7 PDFFYREAQRLGYVARSAFKLLQIQKQYK--LIKPGSSVLDLGCAPGAWLQVACQSLGPL 64
D R+ ++ + L K Y+ L+ VL
Sbjct: 217 SDHSSNIKLRIH-SIQAELRRLLKSKPYENCLL-----VLL-----NVQ----------- 254
Query: 65 DNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVR---ALSPKQKGFSVILSDM 121
+ K +L C + T V + S +L
Sbjct: 255 ---------NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL------- 298
Query: 122 CPSVSGITTKDAALSV---ELGMRAVDL---ALG--PAALA 154
T D S+ L R DL L P L+
Sbjct: 299 --------TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 38.6 bits (90), Expect = 5e-04
Identities = 33/151 (21%), Positives = 47/151 (31%), Gaps = 51/151 (33%)
Query: 35 KL-IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKV-------KVPSLHCD 86
L +KPG+ +LDLG G L + D+G + GID+ + + L
Sbjct: 31 VLRMKPGTRILDLGSGSGEMLCTWAR-----DHGITGTGIDMSSLFTAQAKRRAEELGVS 85
Query: 87 ARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDL 146
RV + D +N+ D A V A
Sbjct: 86 ERVHFIHNDAAGYVANE---------KC-----------------DVAACVGATWIAGGF 119
Query: 147 ALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177
A LA LKPGG ++I
Sbjct: 120 AGAEELLAQ------------SLKPGGIMLI 138
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 38.6 bits (90), Expect = 5e-04
Identities = 24/152 (15%), Positives = 43/152 (28%), Gaps = 54/152 (35%)
Query: 35 KLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDV---------KKVKVPSLHC 85
+ ++PG + D+GC G L + V G+D+ +K + H
Sbjct: 29 EQVEPGKRIADIGCGTGTATL-------LLADHYEVTGVDLSEEMLEIAQEKAMETNRH- 80
Query: 86 DARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVD 145
V D+ L + I +C S++ + T+
Sbjct: 81 ---VDFWVQDMRELELPE---------PVDAITI-LCDSLNYLQTEADVK---------- 117
Query: 146 LALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177
S +L GG L+
Sbjct: 118 -----QTFDS-AAR--------LLTDGGKLLF 135
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 38.0 bits (88), Expect = 6e-04
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 15/61 (24%)
Query: 15 QRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGID 74
QR+ V + + V+DLGC G L++ + + G+D
Sbjct: 16 QRMNGVVAALKQS-----------NARRVIDLGCGQGNLLKILLKDSF----FEQITGVD 60
Query: 75 V 75
V
Sbjct: 61 V 61
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 37.9 bits (88), Expect = 6e-04
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 12/44 (27%)
Query: 35 KLIKPGSSVLDLGCAPG---AWLQVACQSLGPLDNGGSVVGIDV 75
+ G+ +L+LGC G + L G V D
Sbjct: 39 GELPAGAKILELGCGAGYQAEAM---------LAAGFDVDATDG 73
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 37.8 bits (88), Expect = 7e-04
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 13/71 (18%)
Query: 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGID-------VKKVKVPSLHCDARV 89
I G+ +D+G PGA + S+ +D + + + + R+
Sbjct: 42 ITAGT-CIDIGSGPGALSIALAKQS-----DFSIRALDFSKHMNEIALKNIADANLNDRI 95
Query: 90 QTVSADVINLP 100
Q V DV N+P
Sbjct: 96 QIVQGDVHNIP 106
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 38.0 bits (88), Expect = 8e-04
Identities = 10/65 (15%), Positives = 17/65 (26%), Gaps = 8/65 (12%)
Query: 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKK--VKVPSLHCDARVQTVSAD 95
VL+L G W + V +D + H V+ D
Sbjct: 45 NIRGDVLELASGTGYWTRHL------SGLADRVTALDGSAEMIAEAGRHGLDNVEFRQQD 98
Query: 96 VINLP 100
+ +
Sbjct: 99 LFDWT 103
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 38.0 bits (88), Expect = 8e-04
Identities = 23/153 (15%), Positives = 42/153 (27%), Gaps = 52/153 (33%)
Query: 35 KLIKPGSSVLDLGCAPGAWLQVACQSLGPL-DNGGSVVGIDV---------KKVKVPSLH 84
+ VL+L G P D G V +++ K++
Sbjct: 78 RTGPVSGPVLELAAGMGRLTF-------PFLDLGWEVTALELSTSVLAAFRKRLAEAPAD 130
Query: 85 CDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAV 144
R V D + A + ++ F ++ S++ + D
Sbjct: 131 VRDRCTLVQGD--------MSAFALDKR-FGTVVI-SSGSINELDEADRR---------- 170
Query: 145 DLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177
AS V L+PGG ++
Sbjct: 171 ------GLYAS-VRE--------HLEPGGKFLL 188
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 186 | |||
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.91 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.85 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.83 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 99.81 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 99.81 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 99.8 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.77 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 99.77 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.76 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.75 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.73 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.72 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 99.68 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.61 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.6 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.59 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.58 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.57 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.55 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.55 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 99.54 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.54 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.54 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.53 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.53 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.52 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.51 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.51 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.51 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.5 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.5 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.5 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.49 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.49 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.49 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.49 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.49 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.48 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.47 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.47 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.47 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.46 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.46 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.46 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.46 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.46 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.46 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.46 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.46 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.46 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.45 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.45 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 99.44 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.44 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.44 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.44 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.44 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.44 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.43 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.43 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.43 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.43 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.43 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.43 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.43 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.42 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.42 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.42 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.42 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.42 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.42 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.42 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.42 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.41 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.41 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.41 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.41 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.41 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.4 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.4 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.4 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.4 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.39 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.39 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.39 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.39 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.39 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.39 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.39 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.38 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.38 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.38 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.38 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.38 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.38 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.38 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.38 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.37 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.37 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.37 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.37 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.37 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.37 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.37 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.37 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.36 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.36 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.36 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.36 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.36 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.35 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.35 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.35 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.34 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.34 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.34 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.34 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.34 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.34 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.34 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.33 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.33 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.33 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.33 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.33 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.33 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.33 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.32 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.32 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.32 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.32 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.32 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.32 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.32 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.31 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.31 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.3 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.3 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.3 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.3 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.3 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.3 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.3 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.29 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.29 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.29 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.28 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.28 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.28 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.28 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.28 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.28 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.27 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.27 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.27 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.27 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.27 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.26 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.26 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.26 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.25 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.25 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.25 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.25 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.25 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.25 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.25 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.24 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.24 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.24 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.24 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.23 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.22 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 99.22 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.22 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.22 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.22 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.21 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.21 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.21 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.21 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.21 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.21 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.21 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.2 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.2 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.2 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.2 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.2 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.2 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.19 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.19 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.19 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.19 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.19 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.19 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.19 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.18 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.18 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.17 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.16 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.15 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.15 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 99.15 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.15 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.15 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.15 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.15 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.15 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.15 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.13 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.13 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.13 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.13 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.12 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.12 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.12 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.12 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.12 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.12 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.11 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.11 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.11 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.11 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.11 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.11 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.1 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.1 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.1 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.1 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.08 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.08 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.08 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.08 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.07 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.07 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.07 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.07 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.06 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.06 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.03 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.01 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.01 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.0 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.99 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.98 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.97 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.97 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.96 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.96 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.95 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.94 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.93 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.91 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.89 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.87 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.86 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.84 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.81 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.81 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.8 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.75 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.75 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.74 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.73 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.73 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.73 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.72 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.71 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.7 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.7 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.62 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.56 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.56 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.55 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.54 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.54 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.53 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.49 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.49 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.48 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.45 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.45 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.42 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.4 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.39 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.37 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 98.19 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.16 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.15 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.14 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 98.06 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.06 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.04 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.95 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.93 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.87 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.77 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.75 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.39 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.15 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.97 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 96.95 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 96.7 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 96.53 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 96.41 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 96.28 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.22 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 96.15 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 95.98 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 95.71 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 95.67 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.63 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 95.41 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.39 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.27 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 95.26 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 95.23 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.17 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 95.12 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 95.08 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 95.06 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 94.99 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 94.98 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 94.93 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 94.93 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 94.78 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 94.69 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 94.64 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 94.38 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 94.38 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 94.36 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 94.35 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 94.31 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 94.28 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 94.26 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 94.25 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 94.24 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 94.22 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 94.14 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 94.11 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 94.08 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 94.06 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 94.02 | |
| 3trk_A | 324 | Nonstructural polyprotein; hydrolase; 2.40A {Chiku | 93.86 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 93.78 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 93.74 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 93.72 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 93.66 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 93.59 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 93.56 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 93.49 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 93.32 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 93.25 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 93.21 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 93.16 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 92.81 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 92.78 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 92.7 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 92.62 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 92.28 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 92.04 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 91.99 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 91.22 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 91.12 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 91.11 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 91.09 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 90.99 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 90.92 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 90.91 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 90.83 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 90.73 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 90.63 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 90.56 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 90.54 | |
| 4gua_A | 670 | Non-structural polyprotein; viral precursor polypr | 90.32 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 89.99 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 89.93 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 89.76 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 89.56 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 89.53 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 89.5 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 89.18 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 88.74 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 88.63 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 88.61 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 88.57 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 88.24 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 88.02 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 87.96 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 87.94 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 87.44 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 87.33 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 86.73 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 86.56 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 86.43 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 86.36 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 86.31 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 86.28 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 86.22 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 86.12 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 85.99 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 85.51 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 85.37 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 85.28 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 85.26 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 84.97 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 84.85 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 84.69 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 84.64 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 84.53 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 84.43 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 84.39 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 83.58 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 83.37 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 83.37 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 83.17 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 82.75 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 82.71 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 82.61 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 82.11 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 81.94 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 81.93 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 80.98 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 80.91 | |
| 3mag_A | 307 | VP39; methylated adenine, methyltransferase, RNA C | 80.53 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 80.2 |
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=5.3e-24 Score=167.93 Aligned_cols=139 Identities=26% Similarity=0.506 Sum_probs=117.7
Q ss_pred hchhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeee
Q 038391 17 LGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADV 96 (186)
Q Consensus 17 ~~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~ 96 (186)
.+|++|+++||.++...+..++++.+|||+|||+|.|+..+++. +++|+|+|+++... ..+++++++|+
T Consensus 3 ~~yr~Ra~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~------~~~V~gvD~~~~~~-----~~~v~~~~~D~ 71 (191)
T 3dou_A 3 LQLRSRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL------ARKIISIDLQEMEE-----IAGVRFIRCDI 71 (191)
T ss_dssp -CTTSHHHHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT------CSEEEEEESSCCCC-----CTTCEEEECCT
T ss_pred CCCCCcHHHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc------CCcEEEEecccccc-----CCCeEEEEccc
Confidence 57999999999999999999999999999999999999999987 48999999998642 24799999999
Q ss_pred cCCChh-hHhhhCC--CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCc
Q 038391 97 INLPSN-QVRALSP--KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGG 173 (186)
Q Consensus 97 ~~~~~~-~l~~~~~--~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG 173 (186)
.+.... .+.+... ..++||+|++|++|+..+.+..++....++.+.++..+.+ +|||||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~------------------~LkpGG 133 (191)
T 3dou_A 72 FKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVR------------------YLRNGG 133 (191)
T ss_dssp TSSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHH------------------HEEEEE
T ss_pred cCHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHH------------------HccCCC
Confidence 876532 2222110 0148999999999999999999988888899999999998 999999
Q ss_pred EEEEEEccCCC
Q 038391 174 HLVIKLLESQD 184 (186)
Q Consensus 174 ~lvi~~~~~~~ 184 (186)
+|++++|.+++
T Consensus 134 ~lv~k~~~~~~ 144 (191)
T 3dou_A 134 NVLLKQFQGDM 144 (191)
T ss_dssp EEEEEEECSTH
T ss_pred EEEEEEcCCCC
Confidence 99999998875
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=147.66 Aligned_cols=140 Identities=25% Similarity=0.455 Sum_probs=110.4
Q ss_pred chhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeec
Q 038391 18 GYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVI 97 (186)
Q Consensus 18 ~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~ 97 (186)
+|++|++++|.++...+..++++.+|||+|||+|.++..+++.+++ .+++|+|+|+++... ..+++++++|+.
T Consensus 1 ~~~~r~~~kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~--~~~~v~gvD~s~~~~-----~~~v~~~~~d~~ 73 (201)
T 2plw_A 1 NYRSRAAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKN--YKNKIIGIDKKIMDP-----IPNVYFIQGEIG 73 (201)
T ss_dssp -CCSTTHHHHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTT--SCEEEEEEESSCCCC-----CTTCEEEECCTT
T ss_pred CcchHHHHHHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCC--CCceEEEEeCCccCC-----CCCceEEEcccc
Confidence 5899999999999999998899999999999999999999998741 037999999999532 246889999987
Q ss_pred CCCh------------------hhHhh-hCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCC
Q 038391 98 NLPS------------------NQVRA-LSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVN 158 (186)
Q Consensus 98 ~~~~------------------~~l~~-~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (186)
+... ..+.. + +..+||+|++++.++..+.+..++....++...++..+.+
T Consensus 74 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~--------- 142 (201)
T 2plw_A 74 KDNMNNIKNINYIDNMNNNSVDYKLKEIL--QDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQ--------- 142 (201)
T ss_dssp TTSSCCC-----------CHHHHHHHHHH--TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred chhhhhhccccccccccchhhHHHHHhhc--CCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHH---------
Confidence 6540 01111 1 3568999999987776666666666666666778888888
Q ss_pred CCCCCCCCcccccCcEEEEEEccCCC
Q 038391 159 NSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 159 ~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
+|||||+|+++++.+++
T Consensus 143 ---------~LkpgG~lv~~~~~~~~ 159 (201)
T 2plw_A 143 ---------YINIGGTYIVKMYLGSQ 159 (201)
T ss_dssp ---------HEEEEEEEEEEEECSTT
T ss_pred ---------HccCCCEEEEEEeCCCC
Confidence 99999999999988654
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-20 Score=144.04 Aligned_cols=143 Identities=31% Similarity=0.537 Sum_probs=111.5
Q ss_pred chhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCC-----CCCCeEEEEeCCCCCCCCcCCCCCeEEE
Q 038391 18 GYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPL-----DNGGSVVGIDVKKVKVPSLHCDARVQTV 92 (186)
Q Consensus 18 ~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~-----~~~~~v~gvDis~~~i~~~~~~~~~~~~ 92 (186)
+|++|+++++.++...+..++++.+|||+|||+|.++..+++.++.. .+.++|+|+|+++.+. ..+++++
T Consensus 1 ~~~~r~~~kl~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----~~~~~~~ 75 (196)
T 2nyu_A 1 SYRSRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----LEGATFL 75 (196)
T ss_dssp CCSSTHHHHHHHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----CTTCEEE
T ss_pred CchhHHHHHHHHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc-----CCCCeEE
Confidence 48999999999999999989999999999999999999999997520 0017999999999652 1357888
Q ss_pred -EeeecCCChh-hHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccc
Q 038391 93 -SADVINLPSN-QVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLK 170 (186)
Q Consensus 93 -~~d~~~~~~~-~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk 170 (186)
++|+.+.... .+.... ++++||+|++++.++..+.+..+......+...++..+.+ +||
T Consensus 76 ~~~d~~~~~~~~~~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------~Lk 136 (196)
T 2nyu_A 76 CPADVTDPRTSQRILEVL-PGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPD------------------ILQ 136 (196)
T ss_dssp CSCCTTSHHHHHHHHHHS-GGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHH------------------HEE
T ss_pred EeccCCCHHHHHHHHHhc-CCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHH------------------Hhc
Confidence 8887654211 111111 2458999999998888787777766666667788888888 999
Q ss_pred cCcEEEEEEccCCC
Q 038391 171 PGGHLVIKLLESQD 184 (186)
Q Consensus 171 pgG~lvi~~~~~~~ 184 (186)
|||+|+++++.+++
T Consensus 137 pgG~lv~~~~~~~~ 150 (196)
T 2nyu_A 137 PGGTFLCKTWAGSQ 150 (196)
T ss_dssp EEEEEEEEECCSGG
T ss_pred CCCEEEEEecCCcc
Confidence 99999999987764
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-20 Score=154.02 Aligned_cols=133 Identities=19% Similarity=0.173 Sum_probs=103.3
Q ss_pred hchhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC----CCCCeEEE
Q 038391 17 LGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH----CDARVQTV 92 (186)
Q Consensus 17 ~~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~----~~~~~~~~ 92 (186)
.+|++|++|||+++++.+ .++++.+|||||||+|+|+.++++..+ ...|+|+|+...+..... ...++.+.
T Consensus 69 g~YrSRAAfKL~ei~eK~-~Lk~~~~VLDLGaAPGGWsQvAa~~~g----v~sV~GvdvG~d~~~~pi~~~~~g~~ii~~ 143 (282)
T 3gcz_A 69 GIAVSRGSAKLRWMEERG-YVKPTGIVVDLGCGRGGWSYYAASLKN----VKKVMAFTLGVQGHEKPIMRTTLGWNLIRF 143 (282)
T ss_dssp SBCSSTHHHHHHHHHHTT-SCCCCEEEEEETCTTCHHHHHHHTSTT----EEEEEEECCCCTTSCCCCCCCBTTGGGEEE
T ss_pred CCEecHHHHHHHHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHhcC----CCeeeeEEeccCccccccccccCCCceEEe
Confidence 469999999999999998 789999999999999999999998754 358999999876532211 12233333
Q ss_pred EeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccC
Q 038391 93 SADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPG 172 (186)
Q Consensus 93 ~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lkpg 172 (186)
+.++.. ..+ +..++|+|+|||+|+ +|.+..|+..++++ ++.+.. +|+||
T Consensus 144 ~~~~dv------~~l--~~~~~DvVLSDmApn-sG~~~~D~~rs~~L----L~~A~~------------------~Lk~g 192 (282)
T 3gcz_A 144 KDKTDV------FNM--EVIPGDTLLCDIGES-SPSIAVEEQRTLRV----LNCAKQ------------------WLQEG 192 (282)
T ss_dssp ECSCCG------GGS--CCCCCSEEEECCCCC-CSCHHHHHHHHHHH----HHHHHH------------------HHHHH
T ss_pred eCCcch------hhc--CCCCcCEEEecCccC-CCChHHHHHHHHHH----HHHHHH------------------HcCCC
Confidence 332211 111 357999999999999 99999998777766 777777 99999
Q ss_pred --cEEEEEEcc--CCCC
Q 038391 173 --GHLVIKLLE--SQDA 185 (186)
Q Consensus 173 --G~lvi~~~~--~~~~ 185 (186)
|.||+|+|. |+++
T Consensus 193 ~~G~Fv~KvF~pyg~~~ 209 (282)
T 3gcz_A 193 NYTEFCIKVLCPYTPLI 209 (282)
T ss_dssp CCCEEEEEESCCCSHHH
T ss_pred CCCcEEEEEecCCCccH
Confidence 999999999 7653
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-19 Score=150.68 Aligned_cols=133 Identities=21% Similarity=0.247 Sum_probs=103.0
Q ss_pred hchhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC----CCCeEEE
Q 038391 17 LGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC----DARVQTV 92 (186)
Q Consensus 17 ~~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~----~~~~~~~ 92 (186)
.+|++|+++||+++.+. ..++++.+|||||||+|+|+.+++++.+ ...|+|+|+.-.+...... ..++.++
T Consensus 53 ~~YrSRaA~KL~ei~ek-~~l~~~~~VLDLGaAPGGWSQvAa~~~~----~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~ 127 (277)
T 3evf_A 53 GVAVSRGTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKE----VSGVKGFTLGRDGHEKPMNVQSLGWNIITF 127 (277)
T ss_dssp CBCSSTHHHHHHHHHHT-TSSCCCEEEEEETCTTCHHHHHHHTSTT----EEEEEEECCCCTTCCCCCCCCBTTGGGEEE
T ss_pred CCccccHHHHHHHHHHh-CCCCCCCEEEEecCCCCHHHHHHHHhcC----CCcceeEEEeccCcccccccCcCCCCeEEE
Confidence 35999999999999999 6789999999999999999999998753 2578899988554211111 1245555
Q ss_pred EeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccC
Q 038391 93 SADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPG 172 (186)
Q Consensus 93 ~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lkpg 172 (186)
+.++.... + ++++||+|+||++|+ +|.+..++..++++ ++++.+ +||||
T Consensus 128 ~~~~dv~~------l--~~~~~DlVlsD~apn-sG~~~~D~~rs~~L----L~~a~~------------------~LkpG 176 (277)
T 3evf_A 128 KDKTDIHR------L--EPVKCDTLLCDIGES-SSSSVTEGERTVRV----LDTVEK------------------WLACG 176 (277)
T ss_dssp ECSCCTTT------S--CCCCCSEEEECCCCC-CSCHHHHHHHHHHH----HHHHHH------------------HHTTC
T ss_pred eccceehh------c--CCCCccEEEecCccC-cCchHHHHHHHHHH----HHHHHH------------------HhCCC
Confidence 66542211 1 367899999999999 99999888776666 777777 99999
Q ss_pred -cEEEEEEcc--CCCC
Q 038391 173 -GHLVIKLLE--SQDA 185 (186)
Q Consensus 173 -G~lvi~~~~--~~~~ 185 (186)
|.||+|+|. |+++
T Consensus 177 ~G~FV~KVf~pyg~~~ 192 (277)
T 3evf_A 177 VDNFCVKVLAPYMPDV 192 (277)
T ss_dssp CSEEEEEESCTTSHHH
T ss_pred CCeEEEEecCCCCccH
Confidence 999999999 7653
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-19 Score=148.31 Aligned_cols=129 Identities=22% Similarity=0.264 Sum_probs=97.7
Q ss_pred hchhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCC-CCeEEEEeCCCCCCCCcCCCCCe---EEE
Q 038391 17 LGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDN-GGSVVGIDVKKVKVPSLHCDARV---QTV 92 (186)
Q Consensus 17 ~~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~-~~~v~gvDis~~~i~~~~~~~~~---~~~ 92 (186)
.+|++|++|||.|+.+.+ +++|+.+||||||+||+|+.++++..+- +. .+.|+|+|+ + ..+......++ ++.
T Consensus 52 g~yRSRAayKL~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~v-g~V~G~vig~D~-~-~~P~~~~~~Gv~~i~~~ 127 (269)
T 2px2_A 52 GHPVSRGTAKLRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNV-QEVRGYTKGGPG-H-EEPMLMQSYGWNIVTMK 127 (269)
T ss_dssp SCCSSTHHHHHHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTE-EEEEEECCCSTT-S-CCCCCCCSTTGGGEEEE
T ss_pred CCcccHHHHHHHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCC-CCceeEEEcccc-c-cCCCcccCCCceEEEee
Confidence 469999999999999998 8999999999999999999999997221 00 145556663 1 11111111334 333
Q ss_pred Ee-eecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCccccc
Q 038391 93 SA-DVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKP 171 (186)
Q Consensus 93 ~~-d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lkp 171 (186)
++ |+.++ .+.++|+|+|||+|+ +|....|+..+++ +++.+.+ +|+|
T Consensus 128 ~G~Df~~~----------~~~~~DvVLSDMAPn-SG~~~vD~~Rs~~----aL~~A~~------------------~Lk~ 174 (269)
T 2px2_A 128 SGVDVFYK----------PSEISDTLLCDIGES-SPSAEIEEQRTLR----ILEMVSD------------------WLSR 174 (269)
T ss_dssp CSCCGGGS----------CCCCCSEEEECCCCC-CSCHHHHHHHHHH----HHHHHHH------------------HHTT
T ss_pred ccCCccCC----------CCCCCCEEEeCCCCC-CCccHHHHHHHHH----HHHHHHH------------------Hhhc
Confidence 46 88764 246899999999998 9999888877666 7788877 9999
Q ss_pred Cc-EEEEEEccC
Q 038391 172 GG-HLVIKLLES 182 (186)
Q Consensus 172 gG-~lvi~~~~~ 182 (186)
|| .|++|+|.+
T Consensus 175 gG~~FvvKVFqg 186 (269)
T 2px2_A 175 GPKEFCIKILCP 186 (269)
T ss_dssp CCSEEEEEESCT
T ss_pred CCcEEEEEECCC
Confidence 99 999999997
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.1e-18 Score=128.53 Aligned_cols=140 Identities=31% Similarity=0.518 Sum_probs=108.7
Q ss_pred chhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeec
Q 038391 18 GYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVI 97 (186)
Q Consensus 18 ~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~ 97 (186)
+|++|+.+++.++...+..++++.+|||+|||+|.++..+++.+++ +.+|+|+|+++ ++.. .+++++++|+.
T Consensus 1 ~y~~r~~~~l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~---~~~v~~~D~~~-~~~~----~~~~~~~~d~~ 72 (180)
T 1ej0_A 1 GLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGG---KGRIIACDLLP-MDPI----VGVDFLQGDFR 72 (180)
T ss_dssp CCSCHHHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCT---TCEEEEEESSC-CCCC----TTEEEEESCTT
T ss_pred CcchhHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCC---CCeEEEEECcc-cccc----CcEEEEEcccc
Confidence 4888999999999999888889999999999999999999998753 47999999999 7654 57888888887
Q ss_pred CCCh-hhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEE
Q 038391 98 NLPS-NQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV 176 (186)
Q Consensus 98 ~~~~-~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lv 176 (186)
+.+. ..+.... +.++||+|+++.+++..+....+.....+.....+..+.+ +|||||.++
T Consensus 73 ~~~~~~~~~~~~-~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------~L~~gG~l~ 133 (180)
T 1ej0_A 73 DELVMKALLERV-GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRD------------------VLAPGGSFV 133 (180)
T ss_dssp SHHHHHHHHHHH-TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHH------------------HEEEEEEEE
T ss_pred cchhhhhhhccC-CCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHH------------------HcCCCcEEE
Confidence 6431 0111101 3568999999887666665555554455555788888888 999999999
Q ss_pred EEEccCCC
Q 038391 177 IKLLESQD 184 (186)
Q Consensus 177 i~~~~~~~ 184 (186)
+..+..+.
T Consensus 134 ~~~~~~~~ 141 (180)
T 1ej0_A 134 VKVFQGEG 141 (180)
T ss_dssp EEEESSTT
T ss_pred EEEecCCc
Confidence 99887654
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=145.28 Aligned_cols=133 Identities=17% Similarity=0.178 Sum_probs=102.8
Q ss_pred hchhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----CCCCCeEEE
Q 038391 17 LGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----HCDARVQTV 92 (186)
Q Consensus 17 ~~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----~~~~~~~~~ 92 (186)
.+|++|+++||.++... ..++++.+||||||+||+|+.++++..+ ...|+|+|+...+.... ....++...
T Consensus 60 g~yrSRaa~KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~g----v~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~ 134 (300)
T 3eld_A 60 GISVSRGAAKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKE----VMSVKGYTLGIEGHEKPIHMQTLGWNIVKF 134 (300)
T ss_dssp CCCSSTTHHHHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTT----EEEEEEECCCCTTSCCCCCCCBTTGGGEEE
T ss_pred CCccchHHHHHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcC----CceeeeEEeccccccccccccccCCceEEe
Confidence 37999999999999999 8899999999999999999999998753 25899999986542221 112233333
Q ss_pred EeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccC
Q 038391 93 SADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPG 172 (186)
Q Consensus 93 ~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lkpg 172 (186)
..++... .+ .+..+|+|+||++|+ +|.+..|+..+.++ +..+.. +|+||
T Consensus 135 ~~~~di~------~l--~~~~~DlVlsD~APn-sG~~~~D~~rs~~L----L~~A~~------------------~LkpG 183 (300)
T 3eld_A 135 KDKSNVF------TM--PTEPSDTLLCDIGES-SSNPLVERDRTMKV----LENFER------------------WKHVN 183 (300)
T ss_dssp ECSCCTT------TS--CCCCCSEEEECCCCC-CSSHHHHHHHHHHH----HHHHHH------------------HCCTT
T ss_pred ecCceee------ec--CCCCcCEEeecCcCC-CCCHHHHHHHHHHH----HHHHHH------------------HhcCC
Confidence 3222111 11 357899999999999 99999998877777 777777 99999
Q ss_pred -cEEEEEEcc--CCCC
Q 038391 173 -GHLVIKLLE--SQDA 185 (186)
Q Consensus 173 -G~lvi~~~~--~~~~ 185 (186)
|.||+|+|. |+++
T Consensus 184 ~G~FV~KvF~~yG~~~ 199 (300)
T 3eld_A 184 TENFCVKVLAPYHPDV 199 (300)
T ss_dssp CCEEEEEESSTTSHHH
T ss_pred CCcEEEEeccccCccH
Confidence 999999999 8653
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-18 Score=143.54 Aligned_cols=125 Identities=24% Similarity=0.327 Sum_probs=96.4
Q ss_pred chhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeC----CCCCCCCc--CC--CCCe
Q 038391 18 GYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDV----KKVKVPSL--HC--DARV 89 (186)
Q Consensus 18 ~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDi----s~~~i~~~--~~--~~~~ 89 (186)
+|++|.+++|.+++.. ..++++.+|||+|||||.++..+++. ++|+|+|+ ++.++... .. ..++
T Consensus 62 ~~~sR~a~KL~~i~~~-~~~~~g~~VLDlGcG~G~~s~~la~~-------~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v 133 (305)
T 2p41_A 62 HAVSRGSAKLRWFVER-NLVTPEGKVVDLGCGRGGWSYYCGGL-------KNVREVKGLTKGGPGHEEPIPMSTYGWNLV 133 (305)
T ss_dssp CCSSTHHHHHHHHHHT-TSSCCCEEEEEETCTTSHHHHHHHTS-------TTEEEEEEECCCSTTSCCCCCCCSTTGGGE
T ss_pred CccccHHHHHHHHHHc-CCCCCCCEEEEEcCCCCHHHHHHHhc-------CCEEEEeccccCchhHHHHHHhhhcCCCCe
Confidence 5899999999998888 66788999999999999999999986 58999999 56544321 11 2568
Q ss_pred EEEEe-eecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcc
Q 038391 90 QTVSA-DVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGV 168 (186)
Q Consensus 90 ~~~~~-d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (186)
+++++ |+..++ ..+||+|+||++++ .+.+..++.... .++..+.+ +
T Consensus 134 ~~~~~~D~~~l~----------~~~fD~V~sd~~~~-~g~~~~d~~~~l----~~L~~~~~------------------~ 180 (305)
T 2p41_A 134 RLQSGVDVFFIP----------PERCDTLLCDIGES-SPNPTVEAGRTL----RVLNLVEN------------------W 180 (305)
T ss_dssp EEECSCCTTTSC----------CCCCSEEEECCCCC-CSSHHHHHHHHH----HHHHHHHH------------------H
T ss_pred EEEeccccccCC----------cCCCCEEEECCccc-cCcchhhHHHHH----HHHHHHHH------------------H
Confidence 88888 776542 35899999999876 566655432221 46677777 9
Q ss_pred cccCcEEEEEEccCC
Q 038391 169 LKPGGHLVIKLLESQ 183 (186)
Q Consensus 169 LkpgG~lvi~~~~~~ 183 (186)
|||||.|++++|.++
T Consensus 181 LkpGG~~v~kv~~~~ 195 (305)
T 2p41_A 181 LSNNTQFCVKVLNPY 195 (305)
T ss_dssp CCTTCEEEEEESCCC
T ss_pred hCCCCEEEEEeCCCC
Confidence 999999999999874
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-18 Score=141.39 Aligned_cols=122 Identities=20% Similarity=0.254 Sum_probs=93.9
Q ss_pred chhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc--CCCC------Ce
Q 038391 18 GYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL--HCDA------RV 89 (186)
Q Consensus 18 ~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~--~~~~------~~ 89 (186)
.|++|++++|.++... ..++++.+|||+|||+|.|+..+++. ++|+|||+++ |+... .... ++
T Consensus 54 ~~~sR~a~KL~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~-------~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v 124 (265)
T 2oxt_A 54 LSVSRGTAKLAWMEER-GYVELTGRVVDLGCGRGGWSYYAASR-------PHVMDVRAYT-LGVGGHEVPRITESYGWNI 124 (265)
T ss_dssp BCSSTHHHHHHHHHHH-TSCCCCEEEEEESCTTSHHHHHHHTS-------TTEEEEEEEC-CCCSSCCCCCCCCBTTGGG
T ss_pred CccchHHHHHHHHHHc-CCCCCCCEEEEeCcCCCHHHHHHHHc-------CcEEEEECch-hhhhhhhhhhhhhccCCCe
Confidence 4899999999998888 66788999999999999999999886 5899999999 53221 1111 67
Q ss_pred EEE--EeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCc
Q 038391 90 QTV--SADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSG 167 (186)
Q Consensus 90 ~~~--~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (186)
.++ ++|+.+++ +++||+|+||+. +..+.+..++... ..++..+.+
T Consensus 125 ~~~~~~~D~~~l~----------~~~fD~V~sd~~-~~~~~~~~d~~~~----l~~L~~~~r------------------ 171 (265)
T 2oxt_A 125 VKFKSRVDIHTLP----------VERTDVIMCDVG-ESSPKWSVESERT----IKILELLEK------------------ 171 (265)
T ss_dssp EEEECSCCTTTSC----------CCCCSEEEECCC-CCCSCHHHHHHHH----HHHHHHHHH------------------
T ss_pred EEEecccCHhHCC----------CCCCcEEEEeCc-ccCCccchhHHHH----HHHHHHHHH------------------
Confidence 888 88887642 468999999986 5555554443221 126777777
Q ss_pred ccccCc--EEEEEEcc
Q 038391 168 VLKPGG--HLVIKLLE 181 (186)
Q Consensus 168 ~LkpgG--~lvi~~~~ 181 (186)
+||||| .|++++|.
T Consensus 172 ~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 172 WKVKNPSADFVVKVLC 187 (265)
T ss_dssp HHHHCTTCEEEEEESC
T ss_pred HhccCCCeEEEEEeCC
Confidence 999999 99999998
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=138.96 Aligned_cols=122 Identities=20% Similarity=0.267 Sum_probs=91.0
Q ss_pred chhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC--CC------CCe
Q 038391 18 GYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH--CD------ARV 89 (186)
Q Consensus 18 ~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~--~~------~~~ 89 (186)
.|++|.+++|.++... ..++++.+|||+|||+|.++..+++. ++|+|||+++ |+.... .. .++
T Consensus 62 ~~~sR~a~KL~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~-------~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v 132 (276)
T 2wa2_A 62 HAVSRGTAKLAWIDER-GGVELKGTVVDLGCGRGSWSYYAASQ-------PNVREVKAYT-LGTSGHEKPRLVETFGWNL 132 (276)
T ss_dssp ---CHHHHHHHHHHHT-TSCCCCEEEEEESCTTCHHHHHHHTS-------TTEEEEEEEC-CCCTTSCCCCCCCCTTGGG
T ss_pred CcCchHHHHHHHHHHc-CCCCCCCEEEEeccCCCHHHHHHHHc-------CCEEEEECch-hhhhhhhchhhhhhcCCCe
Confidence 4899999999998887 66788999999999999999999986 5899999999 532211 11 167
Q ss_pred EEE--EeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCc
Q 038391 90 QTV--SADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSG 167 (186)
Q Consensus 90 ~~~--~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (186)
.++ ++|+.+++ +++||+|+||+. +..+.+..++... ..++.++.+
T Consensus 133 ~~~~~~~D~~~l~----------~~~fD~Vvsd~~-~~~~~~~~d~~~~----l~~L~~~~r------------------ 179 (276)
T 2wa2_A 133 ITFKSKVDVTKME----------PFQADTVLCDIG-ESNPTAAVEASRT----LTVLNVISR------------------ 179 (276)
T ss_dssp EEEECSCCGGGCC----------CCCCSEEEECCC-CCCSCHHHHHHHH----HHHHHHHHH------------------
T ss_pred EEEeccCcHhhCC----------CCCcCEEEECCC-cCCCchhhhHHHH----HHHHHHHHH------------------
Confidence 888 88887642 468999999986 4545444443221 126777777
Q ss_pred ccccCc--EEEEEEcc
Q 038391 168 VLKPGG--HLVIKLLE 181 (186)
Q Consensus 168 ~LkpgG--~lvi~~~~ 181 (186)
+||||| .|++++|.
T Consensus 180 ~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 180 WLEYNQGCGFCVKVLN 195 (276)
T ss_dssp HHHHSTTCEEEEEESC
T ss_pred HhccCCCcEEEEEeCC
Confidence 999999 99999997
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.2e-18 Score=138.10 Aligned_cols=133 Identities=16% Similarity=0.095 Sum_probs=89.5
Q ss_pred CCCCCChHHHHHHhhc-hhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 3 GVGAPDFFYREAQRLG-YVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 3 ~~~~~~~~~~~~~~~~-y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
+..+.|.|...+..+. ||....-.+.+.+..+. ..+.+|||+|||+|.++..+++. +.+|+|+|+|+.|++
T Consensus 4 ms~f~d~F~~~a~~Y~~~Rp~yp~~l~~~l~~~~--~~~~~vLDvGcGtG~~~~~l~~~------~~~v~gvD~s~~ml~ 75 (257)
T 4hg2_A 4 MAAFKDHFTPVADAYRAFRPRYPRALFRWLGEVA--PARGDALDCGCGSGQASLGLAEF------FERVHAVDPGEAQIR 75 (257)
T ss_dssp ----------------CCCCCCCHHHHHHHHHHS--SCSSEEEEESCTTTTTHHHHHTT------CSEEEEEESCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhc--CCCCCEEEEcCCCCHHHHHHHHh------CCEEEEEeCcHHhhh
Confidence 4456788887766532 34332334555555433 45679999999999999999987 479999999999998
Q ss_pred CcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCC
Q 038391 82 SLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSD 161 (186)
Q Consensus 82 ~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (186)
.+....+++++++|+.+++. ++++||+|++... .|..+ ...++.++.+
T Consensus 76 ~a~~~~~v~~~~~~~e~~~~--------~~~sfD~v~~~~~-----~h~~~-------~~~~~~e~~r------------ 123 (257)
T 4hg2_A 76 QALRHPRVTYAVAPAEDTGL--------PPASVDVAIAAQA-----MHWFD-------LDRFWAELRR------------ 123 (257)
T ss_dssp TCCCCTTEEEEECCTTCCCC--------CSSCEEEEEECSC-----CTTCC-------HHHHHHHHHH------------
T ss_pred hhhhcCCceeehhhhhhhcc--------cCCcccEEEEeee-----hhHhh-------HHHHHHHHHH------------
Confidence 87777899999999877653 4689999999543 34444 3467888888
Q ss_pred CCCCCcccccCcEEEEEEcc
Q 038391 162 SSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 162 ~~~~~~~LkpgG~lvi~~~~ 181 (186)
+|||||+|++..+.
T Consensus 124 ------vLkpgG~l~~~~~~ 137 (257)
T 4hg2_A 124 ------VARPGAVFAAVTYG 137 (257)
T ss_dssp ------HEEEEEEEEEEEEC
T ss_pred ------HcCCCCEEEEEECC
Confidence 99999999987664
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5e-16 Score=125.86 Aligned_cols=129 Identities=23% Similarity=0.275 Sum_probs=101.1
Q ss_pred hchhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEE
Q 038391 17 LGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQT 91 (186)
Q Consensus 17 ~~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~ 91 (186)
.+|++|+++||.++++.+ .++++.+||||||+||+|+.+++.+.+. .+|+|+|+-..-.+. ...-..++|
T Consensus 57 g~yrSRa~~KL~ei~ek~-~l~~g~~VvDLGaapGGWSq~~a~~~g~----~~V~avdvG~~ghe~P~~~~s~gwn~v~f 131 (267)
T 3p8z_A 57 HHAVSRGSAKLQWFVERN-MVIPEGRVIDLGCGRGGWSYYCAGLKKV----TEVRGYTKGGPGHEEPVPMSTYGWNIVKL 131 (267)
T ss_dssp SCCSSTHHHHHHHHHHTT-SSCCCEEEEEESCTTSHHHHHHHTSTTE----EEEEEECCCSTTSCCCCCCCCTTTTSEEE
T ss_pred CCccchHHHHHHHHHHhc-CCCCCCEEEEcCCCCCcHHHHHHHhcCC----CEEEEEecCCCCccCcchhhhcCcCceEE
Confidence 369999999999999999 7899999999999999999999988643 589999998765432 122245888
Q ss_pred EEe-eecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccc
Q 038391 92 VSA-DVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLK 170 (186)
Q Consensus 92 ~~~-d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk 170 (186)
.++ |+.... ..++|.|+||+.+ .++....+... ...+++.+.+ .|+
T Consensus 132 k~gvDv~~~~----------~~~~DtllcDIge-Ss~~~~vE~~R----tlrvLela~~------------------wL~ 178 (267)
T 3p8z_A 132 MSGKDVFYLP----------PEKCDTLLCDIGE-SSPSPTVEESR----TIRVLKMVEP------------------WLK 178 (267)
T ss_dssp ECSCCGGGCC----------CCCCSEEEECCCC-CCSCHHHHHHH----HHHHHHHHGG------------------GCS
T ss_pred EeccceeecC----------CccccEEEEecCC-CCCChhhhhhH----HHHHHHHHHH------------------hcc
Confidence 887 764442 3679999999987 55555544433 3348888888 999
Q ss_pred cCcEEEEEEccCCC
Q 038391 171 PGGHLVIKLLESQD 184 (186)
Q Consensus 171 pgG~lvi~~~~~~~ 184 (186)
+ |.|+||+|++.+
T Consensus 179 ~-~~fc~KVl~py~ 191 (267)
T 3p8z_A 179 N-NQFCIKVLNPYM 191 (267)
T ss_dssp S-CEEEEEESCCCS
T ss_pred c-CCEEEEEccCCC
Confidence 8 899999999875
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.7e-16 Score=124.66 Aligned_cols=123 Identities=19% Similarity=0.266 Sum_probs=90.7
Q ss_pred chhhhhHH--hHHHHHHH-c--CCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCCCC
Q 038391 18 GYVARSAF--KLLQIQKQ-Y--KLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCDAR 88 (186)
Q Consensus 18 ~y~~r~~~--~l~~~~~~-~--~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~~~ 88 (186)
.||.+.++ ||...+.. . ..++||.+|||+|||+|.++..+++.+++ .++|+|+|+++.|+.. +....+
T Consensus 51 e~r~w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~---~G~V~avD~s~~~~~~l~~~a~~~~n 127 (233)
T 4df3_A 51 EYREWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGP---RGRIYGVEFAPRVMRDLLTVVRDRRN 127 (233)
T ss_dssp EEEECCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCT---TCEEEEEECCHHHHHHHHHHSTTCTT
T ss_pred eeeeECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHhhHhhcC
Confidence 36655544 66654433 1 23699999999999999999999999986 7999999999999754 334468
Q ss_pred eEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcc
Q 038391 89 VQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGV 168 (186)
Q Consensus 89 ~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (186)
+..+.+|....... ....+++|+|+++.. .+ . ....++.++.+ .
T Consensus 128 i~~V~~d~~~p~~~-----~~~~~~vDvVf~d~~-----~~--~------~~~~~l~~~~r------------------~ 171 (233)
T 4df3_A 128 IFPILGDARFPEKY-----RHLVEGVDGLYADVA-----QP--E------QAAIVVRNARF------------------F 171 (233)
T ss_dssp EEEEESCTTCGGGG-----TTTCCCEEEEEECCC-----CT--T------HHHHHHHHHHH------------------H
T ss_pred eeEEEEeccCcccc-----ccccceEEEEEEecc-----CC--h------hHHHHHHHHHH------------------h
Confidence 88998887654321 113578999998753 11 1 14567888887 9
Q ss_pred cccCcEEEEEE
Q 038391 169 LKPGGHLVIKL 179 (186)
Q Consensus 169 LkpgG~lvi~~ 179 (186)
|||||+++|.+
T Consensus 172 LKpGG~lvI~i 182 (233)
T 4df3_A 172 LRDGGYMLMAI 182 (233)
T ss_dssp EEEEEEEEEEE
T ss_pred ccCCCEEEEEE
Confidence 99999999875
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.60 E-value=5.8e-16 Score=123.21 Aligned_cols=132 Identities=8% Similarity=0.099 Sum_probs=82.2
Q ss_pred CChHHHHHHhhchhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC--
Q 038391 7 PDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-- 84 (186)
Q Consensus 7 ~~~~~~~~~~~~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-- 84 (186)
.++|+...+.+.|..........+...+....++.+|||+|||+|.++..+++. +.+|+|+|+++.++..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~ 83 (250)
T 2p7i_A 10 QEIKDTAGHKYAYNFDFDVMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEH------FNDITCVEASEEAISHAQGR 83 (250)
T ss_dssp -------------CHHHHTHHHHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTT------CSCEEEEESCHHHHHHHHHH
T ss_pred HHHHhhHHHHhcCccchhhHHHHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHh------CCcEEEEeCCHHHHHHHHHh
Confidence 567776666655533221111122233332346789999999999999999986 468999999999875521
Q ss_pred CCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHc-CCcccCCCCCCCCCC
Q 038391 85 CDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLAL-GPAALASPVNNSDSS 163 (186)
Q Consensus 85 ~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 163 (186)
...+++++++|+.+.. ++++||+|++... ..|..+ ...++.++. +
T Consensus 84 ~~~~v~~~~~d~~~~~---------~~~~fD~v~~~~~----l~~~~~-------~~~~l~~~~~~-------------- 129 (250)
T 2p7i_A 84 LKDGITYIHSRFEDAQ---------LPRRYDNIVLTHV----LEHIDD-------PVALLKRINDD-------------- 129 (250)
T ss_dssp SCSCEEEEESCGGGCC---------CSSCEEEEEEESC----GGGCSS-------HHHHHHHHHHT--------------
T ss_pred hhCCeEEEEccHHHcC---------cCCcccEEEEhhH----HHhhcC-------HHHHHHHHHHH--------------
Confidence 1127899999887652 3578999999532 122222 357888888 8
Q ss_pred CCCcccccCcEEEEEEccC
Q 038391 164 TDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 164 ~~~~~LkpgG~lvi~~~~~ 182 (186)
+|||||+|++.....
T Consensus 130 ----~LkpgG~l~i~~~~~ 144 (250)
T 2p7i_A 130 ----WLAEGGRLFLVCPNA 144 (250)
T ss_dssp ----TEEEEEEEEEEEECT
T ss_pred ----hcCCCCEEEEEcCCh
Confidence 999999999988654
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.2e-15 Score=124.51 Aligned_cols=119 Identities=21% Similarity=0.243 Sum_probs=89.3
Q ss_pred chhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-cCCCCCeEEE-Eee
Q 038391 18 GYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-LHCDARVQTV-SAD 95 (186)
Q Consensus 18 ~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-~~~~~~~~~~-~~d 95 (186)
.|.+|..++|.+++..+....++.+|||+|||||.++..+++. + ..+|+|+|+++.|+.. .....++... ..|
T Consensus 64 ~yvsrg~~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~-g----a~~V~aVDvs~~mL~~a~r~~~rv~~~~~~n 138 (291)
T 3hp7_A 64 RYVSRGGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQN-G----AKLVYAVDVGTNQLVWKLRQDDRVRSMEQYN 138 (291)
T ss_dssp CSSSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-T----CSEEEEECSSSSCSCHHHHTCTTEEEECSCC
T ss_pred ccccchHHHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhC-C----CCEEEEEECCHHHHHHHHHhCcccceecccC
Confidence 5999999999999999886567889999999999999999987 2 3699999999999976 3334455433 345
Q ss_pred ecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEE
Q 038391 96 VINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHL 175 (186)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~l 175 (186)
+..+....+ +..+||+|++|..+. .. ..++.++.+ +|||||.|
T Consensus 139 i~~l~~~~l-----~~~~fD~v~~d~sf~-----sl---------~~vL~e~~r------------------vLkpGG~l 181 (291)
T 3hp7_A 139 FRYAEPVDF-----TEGLPSFASIDVSFI-----SL---------NLILPALAK------------------ILVDGGQV 181 (291)
T ss_dssp GGGCCGGGC-----TTCCCSEEEECCSSS-----CG---------GGTHHHHHH------------------HSCTTCEE
T ss_pred ceecchhhC-----CCCCCCEEEEEeeHh-----hH---------HHHHHHHHH------------------HcCcCCEE
Confidence 544433221 234599999987421 11 357777777 99999999
Q ss_pred EEE
Q 038391 176 VIK 178 (186)
Q Consensus 176 vi~ 178 (186)
++.
T Consensus 182 v~l 184 (291)
T 3hp7_A 182 VAL 184 (291)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.5e-15 Score=121.58 Aligned_cols=106 Identities=20% Similarity=0.352 Sum_probs=81.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
+++|.+|||+|||+|..+..+++.+.. ++.+|+|||+|+.|++.+ ....+++++++|+.+++
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~--~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~--------- 136 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHH--DNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA--------- 136 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCS--SSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCC---------
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCC--CCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccc---------
Confidence 589999999999999999999998754 367999999999997652 33458999999987764
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
-++||+|++... .+.... .....++.++.+ .|||||.|++....
T Consensus 137 -~~~~d~v~~~~~-----l~~~~~----~~~~~~l~~i~~------------------~LkpGG~lii~e~~ 180 (261)
T 4gek_A 137 -IENASMVVLNFT-----LQFLEP----SERQALLDKIYQ------------------GLNPGGALVLSEKF 180 (261)
T ss_dssp -CCSEEEEEEESC-----GGGSCH----HHHHHHHHHHHH------------------HEEEEEEEEEEEEB
T ss_pred -ccccccceeeee-----eeecCc----hhHhHHHHHHHH------------------HcCCCcEEEEEecc
Confidence 347999998542 222221 123467788887 99999999987543
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-15 Score=123.26 Aligned_cols=106 Identities=21% Similarity=0.242 Sum_probs=78.4
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC----CcCCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP----SLHCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~----~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
+++|.+|||+|||+|.++..+++.+++ .++|+|+|+++.|+. .+....++.++++|+...... .. ..+
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~---~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~--~~---~~~ 145 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIEL---NGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSY--KS---VVE 145 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTT---TSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGT--TT---TCC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCC---CCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhh--hc---ccc
Confidence 688999999999999999999999875 689999999998752 222235799999998754321 00 135
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+||+|++|++. .+ ....+...+.+ .|||||+|++.+..
T Consensus 146 ~~D~I~~d~a~-------~~------~~~il~~~~~~------------------~LkpGG~lvisik~ 183 (232)
T 3id6_C 146 NVDVLYVDIAQ-------PD------QTDIAIYNAKF------------------FLKVNGDMLLVIKA 183 (232)
T ss_dssp CEEEEEECCCC-------TT------HHHHHHHHHHH------------------HEEEEEEEEEEEC-
T ss_pred ceEEEEecCCC-------hh------HHHHHHHHHHH------------------hCCCCeEEEEEEcc
Confidence 89999998752 22 13344555666 89999999998643
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-15 Score=118.71 Aligned_cols=103 Identities=14% Similarity=0.182 Sum_probs=76.8
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC------------------CCCCeEEEEeeecC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH------------------CDARVQTVSADVIN 98 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~------------------~~~~~~~~~~d~~~ 98 (186)
++++.+|||+|||+|..+..++++ +.+|+|+|+|+.|++.++ ...+++++++|+.+
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~------g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 93 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQ------GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA 93 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH------CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHC------CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcccc
Confidence 567889999999999999999997 579999999999976521 13579999999988
Q ss_pred CChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 99 LPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 99 ~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
++... .++||+|++... .+... ......++.++.+ +|||||++++.
T Consensus 94 l~~~~-------~~~fD~v~~~~~-----l~~l~----~~~~~~~l~~~~r------------------~LkpgG~~~l~ 139 (203)
T 1pjz_A 94 LTARD-------IGHCAAFYDRAA-----MIALP----ADMRERYVQHLEA------------------LMPQACSGLLI 139 (203)
T ss_dssp STHHH-------HHSEEEEEEESC-----GGGSC----HHHHHHHHHHHHH------------------HSCSEEEEEEE
T ss_pred CCccc-------CCCEEEEEECcc-----hhhCC----HHHHHHHHHHHHH------------------HcCCCcEEEEE
Confidence 76431 158999998432 22222 1234567788887 99999984444
Q ss_pred E
Q 038391 179 L 179 (186)
Q Consensus 179 ~ 179 (186)
+
T Consensus 140 ~ 140 (203)
T 1pjz_A 140 T 140 (203)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.1e-15 Score=120.06 Aligned_cols=102 Identities=15% Similarity=0.191 Sum_probs=80.9
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
++++.+|||+|||+|.++..+++. +.+|+|+|+|+.++..+....+++++++|+.+.+. +.++||+
T Consensus 32 ~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~--------~~~~fD~ 97 (261)
T 3ege_A 32 LPKGSVIADIGAGTGGYSVALANQ------GLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLAL--------PDKSVDG 97 (261)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHTT------TCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCS--------CTTCBSE
T ss_pred CCCCCEEEEEcCcccHHHHHHHhC------CCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCC--------CCCCEeE
Confidence 577899999999999999999973 58999999999998765554589999999877643 3579999
Q ss_pred EEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 117 V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
|++... ..+..+ ...++.++.+ +|| ||++++..+..
T Consensus 98 v~~~~~----l~~~~~-------~~~~l~~~~~------------------~Lk-gG~~~~~~~~~ 133 (261)
T 3ege_A 98 VISILA----IHHFSH-------LEKSFQEMQR------------------IIR-DGTIVLLTFDI 133 (261)
T ss_dssp EEEESC----GGGCSS-------HHHHHHHHHH------------------HBC-SSCEEEEEECG
T ss_pred EEEcch----HhhccC-------HHHHHHHHHH------------------HhC-CcEEEEEEcCC
Confidence 999542 122222 4577888888 999 99999887764
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-14 Score=119.48 Aligned_cols=127 Identities=21% Similarity=0.296 Sum_probs=94.5
Q ss_pred chhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCC-CCeEEE
Q 038391 18 GYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCD-ARVQTV 92 (186)
Q Consensus 18 ~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~-~~~~~~ 92 (186)
+|++|+++||.+++..+ .++++.+||||||+||+|+.+++.+.+. .+|+|+|+-..-.+. .... .-+.+.
T Consensus 74 ~y~SR~~~KL~ei~~~~-~l~~~~~VlDLGaapGGwsq~~~~~~gv----~~V~avdvG~~~he~P~~~~ql~w~lV~~~ 148 (321)
T 3lkz_A 74 HPVSRGTAKLRWLVERR-FLEPVGKVIDLGCGRGGWCYYMATQKRV----QEVRGYTKGGPGHEEPQLVQSYGWNIVTMK 148 (321)
T ss_dssp CCSSTHHHHHHHHHHTT-SCCCCEEEEEETCTTCHHHHHHTTCTTE----EEEEEECCCSTTSCCCCCCCBTTGGGEEEE
T ss_pred CccchHHHHHHHHHHhc-CCCCCCEEEEeCCCCCcHHHHHHhhcCC----CEEEEEEcCCCCccCcchhhhcCCcceEEE
Confidence 49999999999999994 5789999999999999999999988642 479999998874221 1111 126666
Q ss_pred Ee-eecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCccccc
Q 038391 93 SA-DVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKP 171 (186)
Q Consensus 93 ~~-d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lkp 171 (186)
.+ |+..+. ...+|+|+||+. ..++....+.. ....+++.+.+ .|++
T Consensus 149 ~~~Dv~~l~----------~~~~D~ivcDig-eSs~~~~ve~~----Rtl~vLel~~~------------------wL~~ 195 (321)
T 3lkz_A 149 SGVDVFYRP----------SECCDTLLCDIG-ESSSSAEVEEH----RTIRVLEMVED------------------WLHR 195 (321)
T ss_dssp CSCCTTSSC----------CCCCSEEEECCC-CCCSCHHHHHH----HHHHHHHHHHH------------------HHTT
T ss_pred eccCHhhCC----------CCCCCEEEEECc-cCCCChhhhhh----HHHHHHHHHHH------------------Hhcc
Confidence 65 665443 357999999986 34444444432 23347777777 9999
Q ss_pred C-cEEEEEEccC
Q 038391 172 G-GHLVIKLLES 182 (186)
Q Consensus 172 g-G~lvi~~~~~ 182 (186)
| |.|+||+|++
T Consensus 196 ~~~~f~~KVl~p 207 (321)
T 3lkz_A 196 GPREFCVKVLCP 207 (321)
T ss_dssp CCCEEEEEESCT
T ss_pred CCCcEEEEEcCC
Confidence 9 9999999998
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-14 Score=114.43 Aligned_cols=142 Identities=15% Similarity=0.158 Sum_probs=94.1
Q ss_pred CCCCCCCChHHHHHHhhchhhhhH---H-hHHH-HHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeC
Q 038391 1 MSGVGAPDFFYREAQRLGYVARSA---F-KLLQ-IQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDV 75 (186)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~y~~r~~---~-~l~~-~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDi 75 (186)
|+.....+.|+..+..++-..+.. + .+.+ +.......+++.+|||+|||+|.++..+++..+ +.+|+|+|+
T Consensus 1 M~~~~~~~~f~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~----~~~v~~vD~ 76 (234)
T 3dtn_A 1 MSLSEIKRKFDAVSGKYDEQRRKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYP----EATFTLVDM 76 (234)
T ss_dssp --CCSSCCCCCHHHHHHHHHHHHHCTTHHHHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCT----TCEEEEEES
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHhCcCHHHHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCC----CCeEEEEEC
Confidence 565666777776665533221111 1 2222 333333356788999999999999999999863 579999999
Q ss_pred CCCCCCCc----CCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCc
Q 038391 76 KKVKVPSL----HCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPA 151 (186)
Q Consensus 76 s~~~i~~~----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (186)
++.++..+ ....+++++++|+.+.+. .++||+|++... .+.... .....++.++.+
T Consensus 77 s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~---------~~~fD~v~~~~~-----l~~~~~----~~~~~~l~~~~~-- 136 (234)
T 3dtn_A 77 SEKMLEIAKNRFRGNLKVKYIEADYSKYDF---------EEKYDMVVSALS-----IHHLED----EDKKELYKRSYS-- 136 (234)
T ss_dssp CHHHHHHHHHHTCSCTTEEEEESCTTTCCC---------CSCEEEEEEESC-----GGGSCH----HHHHHHHHHHHH--
T ss_pred CHHHHHHHHHhhccCCCEEEEeCchhccCC---------CCCceEEEEeCc-----cccCCH----HHHHHHHHHHHH--
Confidence 99986541 122379999999877642 368999999542 222221 112357777777
Q ss_pred ccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 152 ALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 152 ~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
+|||||.|++..+..
T Consensus 137 ----------------~LkpgG~l~~~~~~~ 151 (234)
T 3dtn_A 137 ----------------ILKESGIFINADLVH 151 (234)
T ss_dssp ----------------HEEEEEEEEEEEECB
T ss_pred ----------------hcCCCcEEEEEEecC
Confidence 999999999987543
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-14 Score=119.25 Aligned_cols=104 Identities=15% Similarity=0.258 Sum_probs=77.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----C-------------------CCCCeEEEE
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----H-------------------CDARVQTVS 93 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----~-------------------~~~~~~~~~ 93 (186)
.+++.+|||+|||+|..+..+++. +.+|+|||+|+.|++.+ . ...++++++
T Consensus 66 ~~~~~~vLD~GCG~G~~~~~La~~------G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 139 (252)
T 2gb4_A 66 GQSGLRVFFPLCGKAIEMKWFADR------GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYC 139 (252)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT------TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEE
T ss_pred CCCCCeEEEeCCCCcHHHHHHHHC------CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEE
Confidence 457889999999999999999997 57999999999997642 1 125799999
Q ss_pred eeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCc
Q 038391 94 ADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGG 173 (186)
Q Consensus 94 ~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG 173 (186)
+|+.+++.. ..++||+|++..... +.. . .....++..+.+ +|||||
T Consensus 140 ~D~~~l~~~-------~~~~FD~V~~~~~l~----~l~-~----~~~~~~l~~~~~------------------~LkpGG 185 (252)
T 2gb4_A 140 CSIFDLPRA-------NIGKFDRIWDRGALV----AIN-P----GDHDRYADIILS------------------LLRKEF 185 (252)
T ss_dssp SCTTTGGGG-------CCCCEEEEEESSSTT----TSC-G----GGHHHHHHHHHH------------------TEEEEE
T ss_pred CccccCCcc-------cCCCEEEEEEhhhhh----hCC-H----HHHHHHHHHHHH------------------HcCCCe
Confidence 999876532 126899999854311 111 1 124467777777 999999
Q ss_pred EEEEEEc
Q 038391 174 HLVIKLL 180 (186)
Q Consensus 174 ~lvi~~~ 180 (186)
+|++.++
T Consensus 186 ~l~l~~~ 192 (252)
T 2gb4_A 186 QYLVAVL 192 (252)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9976554
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=4e-15 Score=114.57 Aligned_cols=114 Identities=15% Similarity=0.113 Sum_probs=76.5
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC------CCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH------CDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~------~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
++++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.+. ...++++++.+...+.. + .
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~------~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~-----~--~ 86 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL------SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDH-----Y--V 86 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT------SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGG-----T--C
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh------CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHh-----h--c
Confidence 578999999999999999999987 489999999999976521 12678888866654321 1 2
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
.++||+|+++......+.+.. ....+.....+..+.+ +|||||++++..+.+.
T Consensus 87 ~~~fD~v~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~------------------~LkpgG~l~i~~~~~~ 139 (185)
T 3mti_A 87 REPIRAAIFNLGYLPSADKSV--ITKPHTTLEAIEKILD------------------RLEVGGRLAIMIYYGH 139 (185)
T ss_dssp CSCEEEEEEEEC-------------CHHHHHHHHHHHHH------------------HEEEEEEEEEEEC---
T ss_pred cCCcCEEEEeCCCCCCcchhc--ccChhhHHHHHHHHHH------------------hcCCCcEEEEEEeCCC
Confidence 568999998742111100000 0111234466777777 9999999999998754
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-14 Score=111.49 Aligned_cols=114 Identities=11% Similarity=0.141 Sum_probs=85.3
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc--CCCCCeEEEEeeecCCChhhH
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL--HCDARVQTVSADVINLPSNQV 104 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~--~~~~~~~~~~~d~~~~~~~~l 104 (186)
+..+......++++.+|||+|||+|.++..+++. +.+|+|+|+++.++..+ ....+++++++|+.+..
T Consensus 34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~---- 103 (218)
T 3ou2_A 34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGL------ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWT---- 103 (218)
T ss_dssp HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH------SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCC----
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCC----
Confidence 3345555555778889999999999999999998 47999999999987652 22357999999987651
Q ss_pred hhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 105 RALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 105 ~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
+.++||+|++... .+.... .....++..+.+ +|||||.+++..+..
T Consensus 104 -----~~~~~D~v~~~~~-----l~~~~~----~~~~~~l~~~~~------------------~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 104 -----PDRQWDAVFFAHW-----LAHVPD----DRFEAFWESVRS------------------AVAPGGVVEFVDVTD 149 (218)
T ss_dssp -----CSSCEEEEEEESC-----GGGSCH----HHHHHHHHHHHH------------------HEEEEEEEEEEEECC
T ss_pred -----CCCceeEEEEech-----hhcCCH----HHHHHHHHHHHH------------------HcCCCeEEEEEeCCC
Confidence 3679999999532 222221 223567777777 999999999987654
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-14 Score=111.79 Aligned_cols=117 Identities=19% Similarity=0.284 Sum_probs=83.7
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
++++.+|||+|||+|.++..+++.+++ .++|+|+|+++.++..+ ....+++++++|+.+....
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------- 89 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGE---NGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKY------- 89 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCT---TCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGT-------
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhh-------
Confidence 578899999999999999999999753 47999999999997552 1235799999998655321
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
..++||+|+++.+.-..+.+... ...+....++..+.+ +|||||++++..+.+.
T Consensus 90 ~~~~fD~v~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~------------------~Lk~gG~l~~~~~~~~ 143 (197)
T 3eey_A 90 IDCPVKAVMFNLGYLPSGDHSIS--TRPETTIQALSKAME------------------LLVTGGIITVVIYYGG 143 (197)
T ss_dssp CCSCEEEEEEEESBCTTSCTTCB--CCHHHHHHHHHHHHH------------------HEEEEEEEEEEECCBT
T ss_pred ccCCceEEEEcCCcccCcccccc--cCcccHHHHHHHHHH------------------hCcCCCEEEEEEccCC
Confidence 34789999998642111111110 011123457777887 9999999999987653
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-14 Score=116.71 Aligned_cols=111 Identities=20% Similarity=0.323 Sum_probs=79.9
Q ss_pred HHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 32 KQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 32 ~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.....++++.+|||+|||+|.++..+++. +.+|+|+|+++.++..+... ++++++|+.+.. ..+ +.
T Consensus 34 ~~l~~~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~----~~~--~~ 99 (240)
T 3dli_A 34 RYIPYFKGCRRVLDIGCGRGEFLELCKEE------GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYL----KSL--PD 99 (240)
T ss_dssp GGGGGTTTCSCEEEETCTTTHHHHHHHHH------TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHH----HTS--CT
T ss_pred HHHhhhcCCCeEEEEeCCCCHHHHHHHhC------CCcEEEEECCHHHHHHHHhh--cceeeccHHHHh----hhc--CC
Confidence 33444678899999999999999999987 47899999999997664332 777777765421 111 36
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
++||+|++... .+.... .....++..+.+ +|||||.+++.+...+
T Consensus 100 ~~fD~i~~~~~-----l~~~~~----~~~~~~l~~~~~------------------~LkpgG~l~~~~~~~~ 144 (240)
T 3dli_A 100 KYLDGVMISHF-----VEHLDP----ERLFELLSLCYS------------------KMKYSSYIVIESPNPT 144 (240)
T ss_dssp TCBSEEEEESC-----GGGSCG----GGHHHHHHHHHH------------------HBCTTCCEEEEEECTT
T ss_pred CCeeEEEECCc-----hhhCCc----HHHHHHHHHHHH------------------HcCCCcEEEEEeCCcc
Confidence 79999999532 222211 114577888887 9999999999987654
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.8e-14 Score=114.00 Aligned_cols=102 Identities=25% Similarity=0.298 Sum_probs=79.2
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
.++++.+|||+|||+|.++..+++.+ +.+|+|+|+++.+++.+ ....+++++++|+.+.+.
T Consensus 33 ~~~~~~~VLDiGcG~G~~~~~la~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~------- 100 (256)
T 1nkv_A 33 RMKPGTRILDLGSGSGEMLCTWARDH-----GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA------- 100 (256)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHHT-----CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-------
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHhc-----CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-------
Confidence 46889999999999999999999986 36999999999997542 223579999999876542
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
.++||+|++... ..+..+ ...++.++.+ +|||||+|++...
T Consensus 101 --~~~fD~V~~~~~----~~~~~~-------~~~~l~~~~r------------------~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 101 --NEKCDVAACVGA----TWIAGG-------FAGAEELLAQ------------------SLKPGGIMLIGEP 141 (256)
T ss_dssp --SSCEEEEEEESC----GGGTSS-------SHHHHHHHTT------------------SEEEEEEEEEEEE
T ss_pred --CCCCCEEEECCC----hHhcCC-------HHHHHHHHHH------------------HcCCCeEEEEecC
Confidence 468999998432 122222 4578888888 9999999999753
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-14 Score=120.87 Aligned_cols=111 Identities=20% Similarity=0.259 Sum_probs=84.0
Q ss_pred CCCCCCEEEEEcccC------ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEE-EEeeecCCChhhHhhhC
Q 038391 36 LIKPGSSVLDLGCAP------GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQT-VSADVINLPSNQVRALS 108 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~------G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~-~~~d~~~~~~~~l~~~~ 108 (186)
.++++.+|||+|||+ |. ..+++.++. +++|+|+|+++. + .++++ +++|+.++..
T Consensus 60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~---~~~V~gvDis~~-v------~~v~~~i~gD~~~~~~------- 120 (290)
T 2xyq_A 60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPT---GTLLVDSDLNDF-V------SDADSTLIGDCATVHT------- 120 (290)
T ss_dssp CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCT---TCEEEEEESSCC-B------CSSSEEEESCGGGCCC-------
T ss_pred CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCC---CCEEEEEECCCC-C------CCCEEEEECccccCCc-------
Confidence 468899999999944 66 666777653 589999999998 3 36888 9999976542
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCCC
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDA 185 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~ 185 (186)
.++||+|++|+.++..+.+..+.....++...++.++.+ +|||||+|+++++++.+.
T Consensus 121 --~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r------------------~LkpGG~~v~~~~~~~~~ 177 (290)
T 2xyq_A 121 --ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQ------------------KLALGGSIAVKITEHSWN 177 (290)
T ss_dssp --SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHH------------------HEEEEEEEEEEECSSSCC
T ss_pred --cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHH------------------hcCCCcEEEEEEeccCCH
Confidence 358999999987666666655544444556688888888 999999999999887653
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.6e-14 Score=115.08 Aligned_cols=107 Identities=21% Similarity=0.266 Sum_probs=81.8
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC----CCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH----CDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~----~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
++++.+|||+|||+|.++..+++.+ +.+|+|+|+++.++..+. ...+++++++|+.+.+. +.+
T Consensus 53 ~~~~~~vLdiG~G~G~~~~~l~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~--------~~~ 119 (266)
T 3ujc_A 53 LNENSKVLDIGSGLGGGCMYINEKY-----GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEF--------PEN 119 (266)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCC--------CTT
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCC--------CCC
Confidence 5778899999999999999999986 379999999999875421 11689999999877643 357
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
+||+|++... .+... ......++..+.+ +|||||.+++..+...
T Consensus 120 ~fD~v~~~~~-----l~~~~----~~~~~~~l~~~~~------------------~L~pgG~l~~~~~~~~ 163 (266)
T 3ujc_A 120 NFDLIYSRDA-----ILALS----LENKNKLFQKCYK------------------WLKPTGTLLITDYCAT 163 (266)
T ss_dssp CEEEEEEESC-----GGGSC----HHHHHHHHHHHHH------------------HEEEEEEEEEEEEEES
T ss_pred cEEEEeHHHH-----HHhcC----hHHHHHHHHHHHH------------------HcCCCCEEEEEEeccC
Confidence 9999999532 22221 1225677888887 9999999999887544
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.5e-14 Score=120.51 Aligned_cols=115 Identities=28% Similarity=0.351 Sum_probs=85.6
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
++++.+|||+|||+|.++..+++.+++ +++|+|+|+++.++... ....+++++++|+..+.. .
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~---~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~--------~ 184 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRN---DGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE--------L 184 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTT---CSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG--------G
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCC---CCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc--------c
Confidence 678999999999999999999998754 58999999999986541 122368888888876532 1
Q ss_pred CCCccEEEeCCCCCCCCCcccchH-----------HHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAA-----------LSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
.++||+|++|++|+..|....+.. .........+..+.+ +|||||+|++.+
T Consensus 185 ~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~------------------~LkpGG~lv~st 246 (315)
T 1ixk_A 185 NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLE------------------VLKPGGILVYST 246 (315)
T ss_dssp CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHH------------------HEEEEEEEEEEE
T ss_pred cccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHH------------------hCCCCCEEEEEe
Confidence 458999999999877765433221 112334577777877 999999999976
Q ss_pred c
Q 038391 180 L 180 (186)
Q Consensus 180 ~ 180 (186)
.
T Consensus 247 c 247 (315)
T 1ixk_A 247 C 247 (315)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-14 Score=115.59 Aligned_cols=104 Identities=17% Similarity=0.215 Sum_probs=77.8
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-CCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-CDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
+++.+|||+|||+|.++..+++. +.+|+|+|+++.++..+. ...+++++++|+.+++. .++||+
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~---------~~~fD~ 113 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADS------FGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL---------GRRFSA 113 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTT------SSEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCC---------SCCEEE
T ss_pred CCCCcEEEeCCcCCHHHHHHHHc------CCeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCc---------cCCcCE
Confidence 56789999999999999999987 469999999999976522 22378999999877642 468999
Q ss_pred EEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 117 V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
|++... ..+ +....+....++..+.+ +|||||.|+|..+.
T Consensus 114 v~~~~~----~l~---~~~~~~~~~~~l~~~~~------------------~L~pgG~l~i~~~~ 153 (263)
T 3pfg_A 114 VTCMFS----SIG---HLAGQAELDAALERFAA------------------HVLPDGVVVVEPWW 153 (263)
T ss_dssp EEECTT----GGG---GSCHHHHHHHHHHHHHH------------------TEEEEEEEEECCCC
T ss_pred EEEcCc----hhh---hcCCHHHHHHHHHHHHH------------------hcCCCcEEEEEecc
Confidence 999431 111 11122335677888887 99999999997543
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-14 Score=114.37 Aligned_cols=108 Identities=16% Similarity=0.215 Sum_probs=81.2
Q ss_pred cCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 34 YKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 34 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
...++++.+|||+|||+|.++..+++. +.+|+|+|+++.++..+....++.+..+|+..++ ..++
T Consensus 38 ~~~~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~---------~~~~ 102 (211)
T 3e23_A 38 LGELPAGAKILELGCGAGYQAEAMLAA------GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLD---------AIDA 102 (211)
T ss_dssp HTTSCTTCEEEESSCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCC---------CCSC
T ss_pred HHhcCCCCcEEEECCCCCHHHHHHHHc------CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCC---------CCCc
Confidence 344678899999999999999999987 4799999999999765333225777888877654 3579
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
||+|++... .+... .+....++..+.+ +|||||++++....++
T Consensus 103 fD~v~~~~~-----l~~~~----~~~~~~~l~~~~~------------------~LkpgG~l~~~~~~~~ 145 (211)
T 3e23_A 103 YDAVWAHAC-----LLHVP----RDELADVLKLIWR------------------ALKPGGLFYASYKSGE 145 (211)
T ss_dssp EEEEEECSC-----GGGSC----HHHHHHHHHHHHH------------------HEEEEEEEEEEEECCS
T ss_pred EEEEEecCc-----hhhcC----HHHHHHHHHHHHH------------------hcCCCcEEEEEEcCCC
Confidence 999999542 22221 1225577778887 9999999999977654
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.4e-14 Score=112.07 Aligned_cols=103 Identities=25% Similarity=0.363 Sum_probs=80.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc---CCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL---HCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~---~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
++++.+|||+|||+|.++..+++. +.+|+|+|+++.++..+ ....+++++++|+.+.+. +.++
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~--------~~~~ 116 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRT------GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPF--------ENEQ 116 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSS--------CTTC
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHc------CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCC--------CCCC
Confidence 467889999999999999999997 47999999999987552 234679999999887642 3579
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
||+|++... ..+..+ ....+..+.+ +|||||.+++..+..
T Consensus 117 fD~v~~~~~----l~~~~~-------~~~~l~~~~~------------------~L~pgG~l~i~~~~~ 156 (242)
T 3l8d_A 117 FEAIMAINS----LEWTEE-------PLRALNEIKR------------------VLKSDGYACIAILGP 156 (242)
T ss_dssp EEEEEEESC----TTSSSC-------HHHHHHHHHH------------------HEEEEEEEEEEEECT
T ss_pred ccEEEEcCh----HhhccC-------HHHHHHHHHH------------------HhCCCeEEEEEEcCC
Confidence 999999542 122222 3467777887 999999999998654
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.49 E-value=8.1e-14 Score=111.99 Aligned_cols=103 Identities=21% Similarity=0.301 Sum_probs=75.9
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.+++.+|||+|||+|.++..+++. +.+|+|+|+++.++..+ ....+++++++|+.+.+. .
T Consensus 39 ~~~~~~vLDlGcG~G~~~~~l~~~------~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~---------~ 103 (252)
T 1wzn_A 39 KREVRRVLDLACGTGIPTLELAER------GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAF---------K 103 (252)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCC---------C
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhccc---------C
Confidence 356789999999999999999986 47999999999997652 122368999999876542 3
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
++||+|++... ..+... .+....++..+.+ +|||||.+++.+.
T Consensus 104 ~~fD~v~~~~~----~~~~~~----~~~~~~~l~~~~~------------------~L~pgG~li~~~~ 146 (252)
T 1wzn_A 104 NEFDAVTMFFS----TIMYFD----EEDLRKLFSKVAE------------------ALKPGGVFITDFP 146 (252)
T ss_dssp SCEEEEEECSS----GGGGSC----HHHHHHHHHHHHH------------------HEEEEEEEEEEEE
T ss_pred CCccEEEEcCC----chhcCC----HHHHHHHHHHHHH------------------HcCCCeEEEEecc
Confidence 68999998421 111111 1235567777777 9999999998753
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.5e-14 Score=112.48 Aligned_cols=114 Identities=21% Similarity=0.258 Sum_probs=83.0
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----CCCCCeEEEEeeecCCChh
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----HCDARVQTVSADVINLPSN 102 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----~~~~~~~~~~~d~~~~~~~ 102 (186)
+..++.......++.+|||+|||+|.++..+++. +.+|+|+|+++.++..+ ....+++++++|+.+..
T Consensus 39 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-- 110 (216)
T 3ofk_A 39 HTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH------CKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-- 110 (216)
T ss_dssp HHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGG------EEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC--
T ss_pred HHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC--
Confidence 3344444444567789999999999999999987 46999999999987541 22347999999987764
Q ss_pred hHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 103 QVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 103 ~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+.++||+|++... ..+..+ .+....++..+.+ +|||||.|++....
T Consensus 111 -------~~~~fD~v~~~~~----l~~~~~----~~~~~~~l~~~~~------------------~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 111 -------TAELFDLIVVAEV----LYYLED----MTQMRTAIDNMVK------------------MLAPGGHLVFGSAR 156 (216)
T ss_dssp -------CSCCEEEEEEESC----GGGSSS----HHHHHHHHHHHHH------------------TEEEEEEEEEEEEC
T ss_pred -------CCCCccEEEEccH----HHhCCC----HHHHHHHHHHHHH------------------HcCCCCEEEEEecC
Confidence 2579999999532 122222 2234567788887 99999999997643
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=8.2e-14 Score=112.12 Aligned_cols=109 Identities=20% Similarity=0.322 Sum_probs=83.2
Q ss_pred HHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCCh
Q 038391 29 QIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPS 101 (186)
Q Consensus 29 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~ 101 (186)
.++.....++++.+|||+|||+|.++..+++.. ..+|+|+|+++.++.. .....+++++++|+.+++.
T Consensus 36 ~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 110 (257)
T 3f4k_A 36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYV-----KGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPF 110 (257)
T ss_dssp HHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHC-----CSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSS
T ss_pred HHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhC-----CCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCC
Confidence 344444456788999999999999999999985 2499999999998754 2233469999999876643
Q ss_pred hhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 102 NQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 102 ~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
+.++||+|++... .+..+ ...++..+.+ +|||||++++...
T Consensus 111 --------~~~~fD~v~~~~~-----l~~~~-------~~~~l~~~~~------------------~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 111 --------QNEELDLIWSEGA-----IYNIG-------FERGMNEWSK------------------YLKKGGFIAVSEA 151 (257)
T ss_dssp --------CTTCEEEEEEESC-----SCCCC-------HHHHHHHHHT------------------TEEEEEEEEEEEE
T ss_pred --------CCCCEEEEEecCh-----HhhcC-------HHHHHHHHHH------------------HcCCCcEEEEEEe
Confidence 3579999999643 22223 3467888888 9999999999874
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.9e-14 Score=111.91 Aligned_cols=105 Identities=26% Similarity=0.386 Sum_probs=77.0
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEE
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVI 117 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V 117 (186)
.++.+|||+|||+|.++..+++. +.+|+|+|+++.++..+....++.+...|+.+.... ......+||+|
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~~~~~fD~v 120 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADR------GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEA----KVPVGKDYDLI 120 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTT------TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTT----CSCCCCCEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHC------CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhccc----ccccCCCccEE
Confidence 45689999999999999999987 479999999999987644446677777776543100 01134569999
Q ss_pred EeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 118 LSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 118 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
++..... ..+ ...++..+.+ +|||||+|++..++.
T Consensus 121 ~~~~~l~-----~~~-------~~~~l~~~~~------------------~L~pgG~l~~~~~~~ 155 (227)
T 3e8s_A 121 CANFALL-----HQD-------IIELLSAMRT------------------LLVPGGALVIQTLHP 155 (227)
T ss_dssp EEESCCC-----SSC-------CHHHHHHHHH------------------TEEEEEEEEEEECCT
T ss_pred EECchhh-----hhh-------HHHHHHHHHH------------------HhCCCeEEEEEecCc
Confidence 9965422 122 3467777887 999999999998754
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.5e-14 Score=126.44 Aligned_cols=116 Identities=22% Similarity=0.211 Sum_probs=87.7
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
++++.+|||+|||+|+++..+++.+++ .++|+++|+++.++... ....++.++++|...+... .
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~---~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~-------~ 172 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKG---KGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPH-------F 172 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTT---CSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHH-------H
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCC---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhh-------c
Confidence 578999999999999999999999864 57999999999986541 1224678888877544211 1
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHH-----------HHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSV-----------ELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
.++||+|++|++|+..|....+..... .+....+..+.+ +|||||+|+..+
T Consensus 173 ~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~------------------~LkpGG~LvYsT 234 (456)
T 3m4x_A 173 SGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIK------------------MLKNKGQLIYST 234 (456)
T ss_dssp TTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHH------------------TEEEEEEEEEEE
T ss_pred cccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHH------------------hcCCCcEEEEEE
Confidence 468999999999988887655443322 334467777777 999999999865
Q ss_pred c
Q 038391 180 L 180 (186)
Q Consensus 180 ~ 180 (186)
-
T Consensus 235 C 235 (456)
T 3m4x_A 235 C 235 (456)
T ss_dssp S
T ss_pred e
Confidence 4
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=9.3e-14 Score=112.99 Aligned_cols=109 Identities=21% Similarity=0.238 Sum_probs=83.0
Q ss_pred HHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChh
Q 038391 30 IQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSN 102 (186)
Q Consensus 30 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~ 102 (186)
++.....++++.+|||+|||+|.++..+++. + +.+|+|+|+++.++.. .....+++++++|+.+++.
T Consensus 37 ~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~- 110 (267)
T 3kkz_A 37 ALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-V----TGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPF- 110 (267)
T ss_dssp HHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-C----SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC-
T ss_pred HHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-c----CCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCC-
Confidence 3344344678899999999999999999997 2 4799999999998654 2233579999999977642
Q ss_pred hHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 103 QVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 103 ~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+.++||+|++... .+..+ ...++..+.+ +|||||++++....
T Consensus 111 -------~~~~fD~i~~~~~-----~~~~~-------~~~~l~~~~~------------------~LkpgG~l~~~~~~ 152 (267)
T 3kkz_A 111 -------RNEELDLIWSEGA-----IYNIG-------FERGLNEWRK------------------YLKKGGYLAVSECS 152 (267)
T ss_dssp -------CTTCEEEEEESSC-----GGGTC-------HHHHHHHHGG------------------GEEEEEEEEEEEEE
T ss_pred -------CCCCEEEEEEcCC-----ceecC-------HHHHHHHHHH------------------HcCCCCEEEEEEee
Confidence 3579999999543 22222 4567888888 99999999998753
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-14 Score=115.49 Aligned_cols=112 Identities=20% Similarity=0.238 Sum_probs=82.3
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC------CCCCeEEEEeeecCCC
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH------CDARVQTVSADVINLP 100 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~------~~~~~~~~~~d~~~~~ 100 (186)
+..+..... ++++.+|||+|||+|.++..+++. ..+|+|+|+++.|+..+. ...+++++++|+.+++
T Consensus 26 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~ 98 (260)
T 1vl5_A 26 LAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPF------VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP 98 (260)
T ss_dssp HHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGG------SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC
T ss_pred HHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHh------CCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCC
Confidence 333444433 567889999999999999999987 369999999999976521 2247899999987764
Q ss_pred hhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 101 SNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 101 ~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
. ++++||+|++... ..|..+ ...++.++.+ +|||||+|++..+
T Consensus 99 ~--------~~~~fD~V~~~~~----l~~~~d-------~~~~l~~~~r------------------~LkpgG~l~~~~~ 141 (260)
T 1vl5_A 99 F--------TDERFHIVTCRIA----AHHFPN-------PASFVSEAYR------------------VLKKGGQLLLVDN 141 (260)
T ss_dssp S--------CTTCEEEEEEESC----GGGCSC-------HHHHHHHHHH------------------HEEEEEEEEEEEE
T ss_pred C--------CCCCEEEEEEhhh----hHhcCC-------HHHHHHHHHH------------------HcCCCCEEEEEEc
Confidence 3 3579999999642 233333 3477888887 9999999999765
Q ss_pred cC
Q 038391 181 ES 182 (186)
Q Consensus 181 ~~ 182 (186)
..
T Consensus 142 ~~ 143 (260)
T 1vl5_A 142 SA 143 (260)
T ss_dssp EB
T ss_pred CC
Confidence 43
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.5e-14 Score=113.78 Aligned_cols=114 Identities=21% Similarity=0.316 Sum_probs=86.1
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINL 99 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~ 99 (186)
.+.+++.....++++.+|||+|||+|.++..+++..+ +.+|+|+|+++.++..+ ....+++++++|+.++
T Consensus 24 ~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~ 99 (276)
T 3mgg_A 24 TLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNP----DAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSL 99 (276)
T ss_dssp HHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCT----TSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGC
T ss_pred HHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccC
Confidence 4555666666678899999999999999999999853 58999999999987542 1224799999998776
Q ss_pred ChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 100 PSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 100 ~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
+. +.++||+|++... ..+..+ ...++..+.+ +|||||++++..
T Consensus 100 ~~--------~~~~fD~v~~~~~----l~~~~~-------~~~~l~~~~~------------------~L~pgG~l~~~~ 142 (276)
T 3mgg_A 100 PF--------EDSSFDHIFVCFV----LEHLQS-------PEEALKSLKK------------------VLKPGGTITVIE 142 (276)
T ss_dssp CS--------CTTCEEEEEEESC----GGGCSC-------HHHHHHHHHH------------------HEEEEEEEEEEE
T ss_pred CC--------CCCCeeEEEEech----hhhcCC-------HHHHHHHHHH------------------HcCCCcEEEEEE
Confidence 43 3579999999542 222223 3467777787 999999999976
Q ss_pred c
Q 038391 180 L 180 (186)
Q Consensus 180 ~ 180 (186)
.
T Consensus 143 ~ 143 (276)
T 3mgg_A 143 G 143 (276)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.7e-14 Score=115.17 Aligned_cols=119 Identities=16% Similarity=0.208 Sum_probs=85.6
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc--------CCCCCeEEEEeeec
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL--------HCDARVQTVSADVI 97 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~--------~~~~~~~~~~~d~~ 97 (186)
.+.+.+..+. .+++.+|||+|||+|.++..+++.+.. +.+|+|+|+++.++..+ ....+++++++|+.
T Consensus 24 ~~~~~l~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 99 (299)
T 3g5t_A 24 DFYKMIDEYH-DGERKLLVDVGCGPGTATLQMAQELKP---FEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSD 99 (299)
T ss_dssp HHHHHHHHHC-CSCCSEEEEETCTTTHHHHHHHHHSSC---CSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTT
T ss_pred HHHHHHHHHh-cCCCCEEEEECCCCCHHHHHHHHhCCC---CCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHH
Confidence 4555555543 257889999999999999999987632 58999999999997652 12568999999998
Q ss_pred CCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 98 NLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 98 ~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
+++......+ ..++||+|++... .+..+ ...++..+.+ +|||||.|++
T Consensus 100 ~~~~~~~~~~--~~~~fD~V~~~~~-----l~~~~-------~~~~l~~~~~------------------~LkpgG~l~i 147 (299)
T 3g5t_A 100 DFKFLGADSV--DKQKIDMITAVEC-----AHWFD-------FEKFQRSAYA------------------NLRKDGTIAI 147 (299)
T ss_dssp CCGGGCTTTT--TSSCEEEEEEESC-----GGGSC-------HHHHHHHHHH------------------HEEEEEEEEE
T ss_pred hCCccccccc--cCCCeeEEeHhhH-----HHHhC-------HHHHHHHHHH------------------hcCCCcEEEE
Confidence 7653210000 1279999999542 22223 4577888887 9999999998
Q ss_pred EEc
Q 038391 178 KLL 180 (186)
Q Consensus 178 ~~~ 180 (186)
..+
T Consensus 148 ~~~ 150 (299)
T 3g5t_A 148 WGY 150 (299)
T ss_dssp EEE
T ss_pred Eec
Confidence 443
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-13 Score=114.17 Aligned_cols=109 Identities=11% Similarity=0.123 Sum_probs=81.8
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCC
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINL 99 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~ 99 (186)
+.+.......++++.+|||+|||+|.++..++.+.. +++|+|+|+++.|++.+ .. .+++++++|+.++
T Consensus 110 l~~~E~~la~l~~g~rVLDIGcG~G~~ta~~lA~~~----ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l 184 (298)
T 3fpf_A 110 LLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVY----GMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVI 184 (298)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCCSSCHHHHHHHHTT----CCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGG
T ss_pred HHHHHHHHcCCCCcCEEEEECCCccHHHHHHHHHcc----CCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhC
Confidence 343333455689999999999999988866555432 58999999999997652 23 6899999998764
Q ss_pred ChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 100 PSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 100 ~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
+ +++||+|++... ..+ ...++.++.+ +|||||+|++..
T Consensus 185 ~----------d~~FDvV~~~a~-------~~d-------~~~~l~el~r------------------~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 185 D----------GLEFDVLMVAAL-------AEP-------KRRVFRNIHR------------------YVDTETRIIYRT 222 (298)
T ss_dssp G----------GCCCSEEEECTT-------CSC-------HHHHHHHHHH------------------HCCTTCEEEEEE
T ss_pred C----------CCCcCEEEECCC-------ccC-------HHHHHHHHHH------------------HcCCCcEEEEEc
Confidence 2 468999998431 122 4578888888 999999999987
Q ss_pred ccC
Q 038391 180 LES 182 (186)
Q Consensus 180 ~~~ 182 (186)
.++
T Consensus 223 ~~~ 225 (298)
T 3fpf_A 223 YTG 225 (298)
T ss_dssp CCG
T ss_pred Ccc
Confidence 665
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-13 Score=109.91 Aligned_cols=105 Identities=26% Similarity=0.333 Sum_probs=81.2
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
.++++.+|||+|||+|.++..+++.. +.+|+|+|+++.++..+ ....+++++.+|+.+++.
T Consensus 58 ~~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------- 125 (273)
T 3bus_A 58 DVRSGDRVLDVGCGIGKPAVRLATAR-----DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPF------- 125 (273)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHHHS-----CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS-------
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhc-----CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCC-------
Confidence 35788999999999999999999875 47999999999986541 234579999999877643
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
++++||+|++... ..+..+ ...++..+.+ +|||||++++..+..
T Consensus 126 -~~~~fD~v~~~~~----l~~~~~-------~~~~l~~~~~------------------~L~pgG~l~i~~~~~ 169 (273)
T 3bus_A 126 -EDASFDAVWALES----LHHMPD-------RGRALREMAR------------------VLRPGGTVAIADFVL 169 (273)
T ss_dssp -CTTCEEEEEEESC----TTTSSC-------HHHHHHHHHT------------------TEEEEEEEEEEEEEE
T ss_pred -CCCCccEEEEech----hhhCCC-------HHHHHHHHHH------------------HcCCCeEEEEEEeec
Confidence 3578999998542 122223 3577888888 999999999987653
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-13 Score=111.06 Aligned_cols=101 Identities=19% Similarity=0.206 Sum_probs=77.5
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc---CCCCCeEEEEeeecCCChhhHhhhCCCCCCc
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL---HCDARVQTVSADVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~---~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~ 114 (186)
.++.+|||+|||+|.++..+++.. ..+|+|+|+++.++..+ ....+++++++|+.+++. +.++|
T Consensus 43 ~~~~~vLD~GcG~G~~~~~l~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~--------~~~~f 109 (253)
T 3g5l_A 43 FNQKTVLDLGCGFGWHCIYAAEHG-----AKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAI--------EPDAY 109 (253)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTT-----CSEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCC--------CTTCE
T ss_pred cCCCEEEEECCCCCHHHHHHHHcC-----CCEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCC--------CCCCe
Confidence 468899999999999999999872 23999999999987552 124679999999876642 35799
Q ss_pred cEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 115 SVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 115 D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
|+|++... ..+..+ ...++..+.+ +|||||.|++.+.
T Consensus 110 D~v~~~~~----l~~~~~-------~~~~l~~~~~------------------~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 110 NVVLSSLA----LHYIAS-------FDDICKKVYI------------------NLKSSGSFIFSVE 146 (253)
T ss_dssp EEEEEESC----GGGCSC-------HHHHHHHHHH------------------HEEEEEEEEEEEE
T ss_pred EEEEEchh----hhhhhh-------HHHHHHHHHH------------------HcCCCcEEEEEeC
Confidence 99999542 112222 4577888887 9999999999854
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.46 E-value=5.3e-14 Score=111.93 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=74.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
++++.+|||+|||+|.++..+++.++ +++|+|+|+|+.|++. +....++.++.+|+...... .. ..+
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~----~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~----~~-~~~ 125 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVD----EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKY----SG-IVE 125 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTT----TSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGT----TT-TCC
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcC----CCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhh----cc-ccc
Confidence 57889999999999999999999864 3799999999986432 22234688888877653110 00 136
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
+||+|+++.. . .+ ....++.++.+ +|||||+|++.+
T Consensus 126 ~fD~V~~~~~-----~--~~------~~~~~l~~~~r------------------~LkpgG~l~i~~ 161 (210)
T 1nt2_A 126 KVDLIYQDIA-----Q--KN------QIEILKANAEF------------------FLKEKGEVVIMV 161 (210)
T ss_dssp CEEEEEECCC-----S--TT------HHHHHHHHHHH------------------HEEEEEEEEEEE
T ss_pred ceeEEEEecc-----C--hh------HHHHHHHHHHH------------------HhCCCCEEEEEE
Confidence 8999999742 1 11 13345777787 999999999985
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.1e-14 Score=109.62 Aligned_cols=113 Identities=21% Similarity=0.289 Sum_probs=84.2
Q ss_pred HHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhh
Q 038391 30 IQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQ 103 (186)
Q Consensus 30 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~ 103 (186)
+..... ++++.+|||+|||+|.++..+++..++ ..+|+|+|+++.++..+ ....+++++++|+.+.+.
T Consensus 29 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-- 102 (219)
T 3dh0_A 29 VLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGE---KGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPL-- 102 (219)
T ss_dssp HHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTT---TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSS--
T ss_pred HHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCC---CcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCC--
Confidence 334433 577889999999999999999999743 47999999999987542 122379999999876642
Q ss_pred HhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 104 VRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 104 l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
+.++||+|++... ..+..+ ...++..+.+ +|||||.+++..+...
T Consensus 103 ------~~~~fD~v~~~~~----l~~~~~-------~~~~l~~~~~------------------~LkpgG~l~i~~~~~~ 147 (219)
T 3dh0_A 103 ------PDNTVDFIFMAFT----FHELSE-------PLKFLEELKR------------------VAKPFAYLAIIDWKKE 147 (219)
T ss_dssp ------CSSCEEEEEEESC----GGGCSS-------HHHHHHHHHH------------------HEEEEEEEEEEEECSS
T ss_pred ------CCCCeeEEEeehh----hhhcCC-------HHHHHHHHHH------------------HhCCCeEEEEEEeccc
Confidence 3578999999542 112222 3567788887 9999999999877644
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-14 Score=114.07 Aligned_cols=101 Identities=21% Similarity=0.243 Sum_probs=77.8
Q ss_pred CCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 35 KLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
..++++.+|||+|||+|.++..+++. +.+|+|+|+++.++..+ ....++++.++|+.+.+.
T Consensus 35 ~~~~~~~~vLDiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-------- 100 (263)
T 2yqz_A 35 HPKGEEPVFLELGVGTGRIALPLIAR------GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPL-------- 100 (263)
T ss_dssp CCSSSCCEEEEETCTTSTTHHHHHTT------TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCS--------
T ss_pred cCCCCCCEEEEeCCcCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCC--------
Confidence 34678899999999999999999986 47999999999997552 224679999999876542
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
++++||+|++... .+.... ...++.++.+ +|||||.+++.
T Consensus 101 ~~~~fD~v~~~~~-----l~~~~~------~~~~l~~~~~------------------~L~pgG~l~~~ 140 (263)
T 2yqz_A 101 PDESVHGVIVVHL-----WHLVPD------WPKVLAEAIR------------------VLKPGGALLEG 140 (263)
T ss_dssp CTTCEEEEEEESC-----GGGCTT------HHHHHHHHHH------------------HEEEEEEEEEE
T ss_pred CCCCeeEEEECCc-----hhhcCC------HHHHHHHHHH------------------HCCCCcEEEEE
Confidence 3578999999542 222211 4567777887 99999999987
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.6e-14 Score=125.71 Aligned_cols=115 Identities=28% Similarity=0.304 Sum_probs=85.9
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
++++.+|||+|||+|+++..+++.+++ .++|+++|+++.++... .... +.++++|+..+... .
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~---~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~-------~ 167 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGG---KGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEA-------F 167 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTT---CSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHH-------H
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhh-------c
Confidence 578999999999999999999999864 57999999999997541 1122 77888877554211 1
Q ss_pred CCCccEEEeCCCCCCCCCcccchH-----------HHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAA-----------LSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
.++||+|++|++|+..|....+.. ....+....+..+.+ +|||||+|+..+
T Consensus 168 ~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~------------------~LkpGG~LvysT 229 (464)
T 3m6w_A 168 GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASR------------------LLGPGGVLVYST 229 (464)
T ss_dssp CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHT------------------TEEEEEEEEEEE
T ss_pred cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHH------------------hcCCCcEEEEEe
Confidence 468999999999887776433221 123345678888888 999999999865
Q ss_pred c
Q 038391 180 L 180 (186)
Q Consensus 180 ~ 180 (186)
-
T Consensus 230 C 230 (464)
T 3m6w_A 230 C 230 (464)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-13 Score=107.15 Aligned_cols=102 Identities=25% Similarity=0.278 Sum_probs=77.8
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
++++ +|||+|||+|.++..+++. + +.+|+|+|+++.++..+ ....+++++++|+.+++.
T Consensus 42 ~~~~-~vLdiG~G~G~~~~~l~~~-~----~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-------- 107 (219)
T 3dlc_A 42 ITAG-TCIDIGSGPGALSIALAKQ-S----DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPI-------- 107 (219)
T ss_dssp CCEE-EEEEETCTTSHHHHHHHHH-S----EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSS--------
T ss_pred CCCC-EEEEECCCCCHHHHHHHHc-C----CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCC--------
Confidence 4555 9999999999999999998 2 47999999999987541 234579999999877653
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+.++||+|+++.. ..+..+ ...++..+.+ +|||||.+++....
T Consensus 108 ~~~~~D~v~~~~~----l~~~~~-------~~~~l~~~~~------------------~L~pgG~l~~~~~~ 150 (219)
T 3dlc_A 108 EDNYADLIVSRGS----VFFWED-------VATAFREIYR------------------ILKSGGKTYIGGGF 150 (219)
T ss_dssp CTTCEEEEEEESC----GGGCSC-------HHHHHHHHHH------------------HEEEEEEEEEEECC
T ss_pred CcccccEEEECch----HhhccC-------HHHHHHHHHH------------------hCCCCCEEEEEecc
Confidence 3579999999642 122222 4567788887 99999999997543
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-13 Score=109.62 Aligned_cols=105 Identities=22% Similarity=0.250 Sum_probs=77.3
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-CCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-CDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
+++.+|||+|||+|.++..+++.. .+|+|+|+++.++..+. ...+++++++|+.+.+ ..++||+
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~------~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~---------~~~~~D~ 103 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEF------GDTAGLELSEDMLTHARKRLPDATLHQGDMRDFR---------LGRKFSA 103 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHH------SEEEEEESCHHHHHHHHHHCTTCEEEECCTTTCC---------CSSCEEE
T ss_pred CCCCeEEEecccCCHHHHHHHHhC------CcEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcc---------cCCCCcE
Confidence 678899999999999999999984 58999999999976532 2246889999887653 1468999
Q ss_pred EEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 117 V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
|+|... ...+..+ .+....++..+.+ +|||||.+++..+..
T Consensus 104 v~~~~~---~~~~~~~----~~~~~~~l~~~~~------------------~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 104 VVSMFS---SVGYLKT----TEELGAAVASFAE------------------HLEPGGVVVVEPWWF 144 (239)
T ss_dssp EEECTT---GGGGCCS----HHHHHHHHHHHHH------------------TEEEEEEEEECCCCC
T ss_pred EEEcCc---hHhhcCC----HHHHHHHHHHHHH------------------hcCCCeEEEEEeccC
Confidence 996321 1112211 1235567777777 999999999987654
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.7e-14 Score=115.68 Aligned_cols=111 Identities=20% Similarity=0.260 Sum_probs=89.3
Q ss_pred CCCCCEEEEEcc------cCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGC------APGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGc------G~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
++.+.+|||+|| .||.+ +++++.+ .++.|+++|+.+-.... . .++++|+.... .
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~---VLr~~~p--~g~~VVavDL~~~~sda-----~-~~IqGD~~~~~---------~ 166 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA---VLRQWLP--TGTLLVDSDLNDFVSDA-----D-STLIGDCATVH---------T 166 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH---HHHHHSC--TTCEEEEEESSCCBCSS-----S-EEEESCGGGEE---------E
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH---HHHHhCC--CCcEEEEeeCcccccCC-----C-eEEEccccccc---------c
Confidence 477999999996 78873 4444444 14699999999976322 2 45899986532 2
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCCC
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDA 185 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~ 185 (186)
+++||+|++||+|+.+|....++..+..+.+.+++.+.+ .|+|||.|++|+|.|++.
T Consensus 167 ~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~------------------~LkpGGsFvVKVFQGsg~ 223 (344)
T 3r24_A 167 ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQ------------------KLALGGSIAVKITEHSWN 223 (344)
T ss_dssp SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHH------------------HEEEEEEEEEEECSSSCC
T ss_pred CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHH------------------hCcCCCEEEEEEecCCCH
Confidence 478999999999999999777777788899999999998 999999999999999874
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-13 Score=114.88 Aligned_cols=104 Identities=17% Similarity=0.241 Sum_probs=81.6
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
++++.+|||+|||+|.++..+++.+ +.+|+|+|+++.+++.+ ....+++++++|+.+++.
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------- 181 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRF-----GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPF-------- 181 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC--------
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCC--------
Confidence 6788999999999999999999986 47999999999997542 233579999999877642
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
+.++||+|++... .+..+ ....+..+.+ +|||||+|++..+...
T Consensus 182 ~~~~fD~V~~~~~-----l~~~~-------~~~~l~~~~~------------------~LkpgG~l~~~~~~~~ 225 (312)
T 3vc1_A 182 DKGAVTASWNNES-----TMYVD-------LHDLFSEHSR------------------FLKVGGRYVTITGCWN 225 (312)
T ss_dssp CTTCEEEEEEESC-----GGGSC-------HHHHHHHHHH------------------HEEEEEEEEEEEEEEC
T ss_pred CCCCEeEEEECCc-----hhhCC-------HHHHHHHHHH------------------HcCCCcEEEEEEcccc
Confidence 3579999999432 22222 5577888887 9999999999876544
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.1e-14 Score=109.25 Aligned_cols=104 Identities=16% Similarity=0.225 Sum_probs=79.3
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-CCCCeEEEEeeecCCChhhHhhhCCCCCCccEEE
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-CDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~ 118 (186)
+.+|||+|||+|.++..+++. +.+|+|+|+++.++..+. ...+++++++|+.+++. +.++||+|+
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~--------~~~~fD~v~ 107 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL------GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSD--------SPKRWAGLL 107 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT------TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGG--------SCCCEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHHhCCCCeEEeCccccccc--------CCCCeEEEE
Confidence 789999999999999999997 469999999999976532 24578999998876542 357999999
Q ss_pred eCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 119 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
+.... .+.. .+....++..+.+ +|||||.+++..+..+.
T Consensus 108 ~~~~l----~~~~-----~~~~~~~l~~~~~------------------~L~pgG~l~i~~~~~~~ 146 (203)
T 3h2b_A 108 AWYSL----IHMG-----PGELPDALVALRM------------------AVEDGGGLLMSFFSGPS 146 (203)
T ss_dssp EESSS----TTCC-----TTTHHHHHHHHHH------------------TEEEEEEEEEEEECCSS
T ss_pred ehhhH----hcCC-----HHHHHHHHHHHHH------------------HcCCCcEEEEEEccCCc
Confidence 95421 1211 0114577778887 99999999999887653
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=6e-13 Score=110.22 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=80.7
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
.++++.+|||+|||+|.++..+++.+ +.+|+|+|+|+.++..+ ....+++++++|+.++
T Consensus 69 ~~~~~~~vLDiGcG~G~~~~~la~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--------- 134 (302)
T 3hem_A 69 NLEPGMTLLDIGCGWGSTMRHAVAEY-----DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--------- 134 (302)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHH-----CCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---------
T ss_pred CCCCcCEEEEeeccCcHHHHHHHHhC-----CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---------
Confidence 36789999999999999999999987 37999999999997541 2334799999988654
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchH--HHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAA--LSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
.++||+|++.... .+..+.. ...+.....+..+.+ +|||||++++..+..+
T Consensus 135 --~~~fD~v~~~~~~----~~~~d~~~~~~~~~~~~~l~~~~~------------------~LkpgG~l~i~~~~~~ 187 (302)
T 3hem_A 135 --DEPVDRIVSLGAF----EHFADGAGDAGFERYDTFFKKFYN------------------LTPDDGRMLLHTITIP 187 (302)
T ss_dssp --CCCCSEEEEESCG----GGTTCCSSCCCTTHHHHHHHHHHH------------------SSCTTCEEEEEEEECC
T ss_pred --CCCccEEEEcchH----HhcCccccccchhHHHHHHHHHHH------------------hcCCCcEEEEEEEecc
Confidence 3689999995421 1111100 001224577888887 9999999999887654
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.6e-13 Score=109.00 Aligned_cols=121 Identities=23% Similarity=0.278 Sum_probs=82.6
Q ss_pred hchhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-CCCCCeEEE-Ee
Q 038391 17 LGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-HCDARVQTV-SA 94 (186)
Q Consensus 17 ~~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-~~~~~~~~~-~~ 94 (186)
..|.+|..++|..++..+....++.+|||+|||+|.++..+++. + ..+|+|+|+++.|+..+ ....++... ..
T Consensus 15 ~~yvsrg~~kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g----~~~V~gvDis~~ml~~a~~~~~~~~~~~~~ 89 (232)
T 3opn_A 15 LRYVSRGGLKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-G----AKLVYALDVGTNQLAWKIRSDERVVVMEQF 89 (232)
T ss_dssp CCSSSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-T----CSEEEEECSSCCCCCHHHHTCTTEEEECSC
T ss_pred CCccCCcHHHHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-C----CCEEEEEcCCHHHHHHHHHhCccccccccc
Confidence 35999999999999998876566889999999999999999987 2 25999999999998862 222333322 12
Q ss_pred eecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcE
Q 038391 95 DVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGH 174 (186)
Q Consensus 95 d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~ 174 (186)
++.......+ ....||.+.+|..... ...++.++.+ +|||||.
T Consensus 90 ~~~~~~~~~~-----~~~~~d~~~~D~v~~~--------------l~~~l~~i~r------------------vLkpgG~ 132 (232)
T 3opn_A 90 NFRNAVLADF-----EQGRPSFTSIDVSFIS--------------LDLILPPLYE------------------ILEKNGE 132 (232)
T ss_dssp CGGGCCGGGC-----CSCCCSEEEECCSSSC--------------GGGTHHHHHH------------------HSCTTCE
T ss_pred eEEEeCHhHc-----CcCCCCEEEEEEEhhh--------------HHHHHHHHHH------------------hccCCCE
Confidence 2322221111 1113566666542111 1357777777 9999999
Q ss_pred EEEEE
Q 038391 175 LVIKL 179 (186)
Q Consensus 175 lvi~~ 179 (186)
|++.+
T Consensus 133 lv~~~ 137 (232)
T 3opn_A 133 VAALI 137 (232)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99853
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-13 Score=114.85 Aligned_cols=112 Identities=22% Similarity=0.240 Sum_probs=79.2
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC---------------------------------
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH--------------------------------- 84 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~--------------------------------- 84 (186)
.++.+|||+|||+|.++..+++.++ ..+|+|+|+++.++..+.
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~----~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWG----PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTV 120 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTC----CSEEEEEESCHHHHHHHHHTC------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcC----CCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 3578999999999999999999985 479999999998864310
Q ss_pred -------------------------------CCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccch
Q 038391 85 -------------------------------CDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDA 133 (186)
Q Consensus 85 -------------------------------~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~ 133 (186)
...+++|+++|+....... ..+ ..++||+|+|.. ......-
T Consensus 121 ~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~-~~~--~~~~fD~I~~~~-----vl~~ihl 192 (292)
T 3g07_A 121 RKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDL-VEA--QTPEYDVVLCLS-----LTKWVHL 192 (292)
T ss_dssp ---------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHH-HTT--CCCCEEEEEEES-----CHHHHHH
T ss_pred cccccccchhhhccCccccccccccccccccccccceEEecccccCcccc-ccc--cCCCcCEEEECh-----HHHHhhh
Confidence 0047999999987654221 111 357999999932 1211111
Q ss_pred HHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 134 ALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
....+....++..+.+ +|||||+|++..
T Consensus 193 ~~~~~~~~~~l~~~~~------------------~LkpGG~lil~~ 220 (292)
T 3g07_A 193 NWGDEGLKRMFRRIYR------------------HLRPGGILVLEP 220 (292)
T ss_dssp HHHHHHHHHHHHHHHH------------------HEEEEEEEEEEC
T ss_pred cCCHHHHHHHHHHHHH------------------HhCCCcEEEEec
Confidence 1133356678888888 999999999963
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-13 Score=110.79 Aligned_cols=103 Identities=17% Similarity=0.250 Sum_probs=80.4
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-CCCCeEEEEeeecCCChhhHhhhCCCCCCcc
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-CDARVQTVSADVINLPSNQVRALSPKQKGFS 115 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D 115 (186)
++++.+|||+|||+|.++..+++.++ +.+|+|+|+++.++..+. ...+++++++|+.+.+ +.++||
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~~~----~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~---------~~~~fD 97 (259)
T 2p35_A 31 LERVLNGYDLGCGPGNSTELLTDRYG----VNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK---------PAQKAD 97 (259)
T ss_dssp CSCCSSEEEETCTTTHHHHHHHHHHC----TTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC---------CSSCEE
T ss_pred CCCCCEEEEecCcCCHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC---------ccCCcC
Confidence 46788999999999999999999874 479999999999976532 1357899999887654 256899
Q ss_pred EEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 116 VILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 116 ~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+|+++.. ..+..+ ...++..+.+ +|||||+|++..+.
T Consensus 98 ~v~~~~~----l~~~~~-------~~~~l~~~~~------------------~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 98 LLYANAV----FQWVPD-------HLAVLSQLMD------------------QLESGGVLAVQMPD 134 (259)
T ss_dssp EEEEESC----GGGSTT-------HHHHHHHHGG------------------GEEEEEEEEEEEEC
T ss_pred EEEEeCc----hhhCCC-------HHHHHHHHHH------------------hcCCCeEEEEEeCC
Confidence 9999542 222222 4577888888 99999999998864
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.8e-14 Score=123.65 Aligned_cols=115 Identities=23% Similarity=0.264 Sum_probs=85.4
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
++.+|||+|||+|++|..+++.+++ .++|+++|+++.++... ....++.++++|+..+... ..+
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~---~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~-------~~~ 186 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNN---EGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAA-------VPE 186 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTT---CSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHH-------STT
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhh-------ccc
Confidence 8999999999999999999999864 58999999999996541 1224688888887654321 246
Q ss_pred CccEEEeCCCCCCCCCcccch-----------HHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 113 GFSVILSDMCPSVSGITTKDA-----------ALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+||.|++|++|+..|....+. .....+....+..+.+ +|||||+|++.+..
T Consensus 187 ~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~------------------~LkpGG~LvysTcs 248 (479)
T 2frx_A 187 MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFH------------------ALRPGGTLVYSTCT 248 (479)
T ss_dssp CEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHH------------------HEEEEEEEEEEESC
T ss_pred cCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHH------------------hcCCCCEEEEeccc
Confidence 899999999987766543221 1112334567777777 99999999988653
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.7e-14 Score=113.03 Aligned_cols=119 Identities=9% Similarity=0.177 Sum_probs=80.9
Q ss_pred HHcCCCC-CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhh
Q 038391 32 KQYKLIK-PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQ 103 (186)
Q Consensus 32 ~~~~~~~-~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~ 103 (186)
..+..++ ++.+|||+|||+|.++..+++.. ..+|+|+|+++.++.. .....+++++++|+.+....
T Consensus 41 ~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~-----~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~- 114 (259)
T 3lpm_A 41 AKFSYLPIRKGKIIDLCSGNGIIPLLLSTRT-----KAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL- 114 (259)
T ss_dssp HHHCCCCSSCCEEEETTCTTTHHHHHHHTTC-----CCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT-
T ss_pred HHHhcCCCCCCEEEEcCCchhHHHHHHHHhc-----CCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh-
Confidence 3444567 88999999999999999999883 2499999999998654 23345799999998765421
Q ss_pred HhhhCCCCCCccEEEeCCCCCCC---CCcccc------hHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcE
Q 038391 104 VRALSPKQKGFSVILSDMCPSVS---GITTKD------AALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGH 174 (186)
Q Consensus 104 l~~~~~~~~~~D~V~~d~~~~~~---~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~ 174 (186)
+ +.++||+|++|+++... +....+ ..........++..+.+ +|||||+
T Consensus 115 ---~--~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~------------------~LkpgG~ 171 (259)
T 3lpm_A 115 ---I--PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAAS------------------LLKQGGK 171 (259)
T ss_dssp ---S--CTTCEEEEEECCCC-----------------------HHHHHHHHHHHH------------------HEEEEEE
T ss_pred ---h--ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHH------------------HccCCcE
Confidence 1 35799999999764332 111110 00111234567788887 9999999
Q ss_pred EEEEE
Q 038391 175 LVIKL 179 (186)
Q Consensus 175 lvi~~ 179 (186)
|++..
T Consensus 172 l~~~~ 176 (259)
T 3lpm_A 172 ANFVH 176 (259)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99954
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.5e-13 Score=111.05 Aligned_cols=105 Identities=17% Similarity=0.269 Sum_probs=81.6
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
.++++.+|||+|||+|.++..+++.+ +.+|+|+|+++.++..+ ....+++++++|+.+++.
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------- 146 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKF-----GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC------- 146 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS-------
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHh-----CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCC-------
Confidence 46788999999999999999999986 36999999999987542 233579999999887653
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
++++||+|++... ..+..+ ...++.++.+ +|||||+|++..+..
T Consensus 147 -~~~~fD~v~~~~~----l~~~~~-------~~~~l~~~~~------------------~LkpgG~l~~~~~~~ 190 (297)
T 2o57_A 147 -EDNSYDFIWSQDA----FLHSPD-------KLKVFQECAR------------------VLKPRGVMAITDPMK 190 (297)
T ss_dssp -CTTCEEEEEEESC----GGGCSC-------HHHHHHHHHH------------------HEEEEEEEEEEEEEE
T ss_pred -CCCCEeEEEecch----hhhcCC-------HHHHHHHHHH------------------HcCCCeEEEEEEecc
Confidence 3578999998532 122222 4577888887 999999999987653
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.6e-13 Score=106.31 Aligned_cols=118 Identities=16% Similarity=0.206 Sum_probs=80.6
Q ss_pred CCCCCCCEEEEEccc-CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-----CCCCeEEEEeeecCCChhhHhhhC
Q 038391 35 KLIKPGSSVLDLGCA-PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-----CDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG-~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-----~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
..++++.+|||+||| +|.++..+++.. +.+|+|+|+++.++..+. ...+++++++|+.....-
T Consensus 51 ~~~~~~~~vLDlG~G~~G~~~~~la~~~-----~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~------ 119 (230)
T 3evz_A 51 TFLRGGEVALEIGTGHTAMMALMAEKFF-----NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGV------ 119 (230)
T ss_dssp TTCCSSCEEEEECCTTTCHHHHHHHHHH-----CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTT------
T ss_pred hhcCCCCEEEEcCCCHHHHHHHHHHHhc-----CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhc------
Confidence 346789999999999 999999999985 379999999999975421 112789999987543211
Q ss_pred CCCCCccEEEeCCCCCCCCCcccch--------HHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDA--------ALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
+.++||+|++|++........... ....+....++..+.+ +|||||++++.+-
T Consensus 120 -~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------~LkpgG~l~~~~~ 180 (230)
T 3evz_A 120 -VEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFD------------------HLNPGGKVALYLP 180 (230)
T ss_dssp -CCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGG------------------GEEEEEEEEEEEE
T ss_pred -ccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHH------------------HhCCCeEEEEEec
Confidence 347999999987643222110000 0001223678888888 9999999999765
Q ss_pred cC
Q 038391 181 ES 182 (186)
Q Consensus 181 ~~ 182 (186)
++
T Consensus 181 ~~ 182 (230)
T 3evz_A 181 DK 182 (230)
T ss_dssp SC
T ss_pred cc
Confidence 43
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.3e-14 Score=116.10 Aligned_cols=107 Identities=21% Similarity=0.255 Sum_probs=73.0
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh---hhHhhhCCCCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS---NQVRALSPKQK 112 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~---~~l~~~~~~~~ 112 (186)
.++++.+|||+|||+|.++..++++ +.+|+|+|+|+.|++.++......+++.++.+... .. ..+
T Consensus 42 ~l~~g~~VLDlGcGtG~~a~~La~~------g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~------~~~ 109 (261)
T 3iv6_A 42 NIVPGSTVAVIGASTRFLIEKALER------GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKE------LAG 109 (261)
T ss_dssp TCCTTCEEEEECTTCHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGG------GTT
T ss_pred CCCCcCEEEEEeCcchHHHHHHHhc------CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccc------cCC
Confidence 4678899999999999999999987 57999999999997652211101134555554432 11 146
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
+||+|+++.. .+.... +.....+..+.+ +| |||++++++..+
T Consensus 110 ~fD~Vv~~~~-----l~~~~~----~~~~~~l~~l~~------------------lL-PGG~l~lS~~~g 151 (261)
T 3iv6_A 110 HFDFVLNDRL-----INRFTT----EEARRACLGMLS------------------LV-GSGTVRASVKLG 151 (261)
T ss_dssp CCSEEEEESC-----GGGSCH----HHHHHHHHHHHH------------------HH-TTSEEEEEEEBS
T ss_pred CccEEEEhhh-----hHhCCH----HHHHHHHHHHHH------------------hC-cCcEEEEEeccC
Confidence 8999999642 221111 124456666776 89 999999997655
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.7e-14 Score=111.26 Aligned_cols=106 Identities=26% Similarity=0.337 Sum_probs=77.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
++++.+|||+|||+|.++..+++.+++ +++|+|+|+++.++.. +....+++++++|+.+... +. ...+
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~---~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~--~~---~~~~ 146 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGP---DGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHK--YR---MLIA 146 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCT---TCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGG--GG---GGCC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCC---CcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhh--hc---ccCC
Confidence 578899999999999999999999753 4799999999875432 2223679999998876321 00 0246
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+||+|+++.+ ..+. ...++..+.+ .|||||++++.+..
T Consensus 147 ~~D~V~~~~~-------~~~~------~~~~~~~~~~------------------~LkpgG~l~i~~~~ 184 (233)
T 2ipx_A 147 MVDVIFADVA-------QPDQ------TRIVALNAHT------------------FLRNGGHFVISIKA 184 (233)
T ss_dssp CEEEEEECCC-------CTTH------HHHHHHHHHH------------------HEEEEEEEEEEEEH
T ss_pred cEEEEEEcCC-------CccH------HHHHHHHHHH------------------HcCCCeEEEEEEcc
Confidence 8999999763 1111 3345666776 99999999997654
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.42 E-value=7e-13 Score=115.91 Aligned_cols=116 Identities=22% Similarity=0.273 Sum_probs=86.4
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.+++.+|||+|||+|+++..+++.++ +++|+|+|+++.++... ....+++++++|+...... + ++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~----~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~----~--~~ 313 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAP----EAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQW----C--GE 313 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCT----TCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHH----H--TT
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcC----CCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhh----c--cc
Confidence 57889999999999999999999864 37999999999997541 1122478888888765321 1 24
Q ss_pred CCccEEEeCCCCCCCCCcccchHH-----------HHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 112 KGFSVILSDMCPSVSGITTKDAAL-----------SVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
++||+|++|++|+..|....+... ...+....+..+.+ +|||||+|++.+.
T Consensus 314 ~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~------------------~LkpGG~lvystc 375 (429)
T 1sqg_A 314 QQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWP------------------HLKTGGTLVYATC 375 (429)
T ss_dssp CCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGG------------------GEEEEEEEEEEES
T ss_pred CCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHH------------------hcCCCCEEEEEEC
Confidence 689999999998877764333221 12334577777887 9999999999873
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=9.8e-14 Score=111.37 Aligned_cols=103 Identities=20% Similarity=0.215 Sum_probs=79.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC------CCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH------CDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~------~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
++++.+|||+|||+|.++..+++. +.+|+|+|+++.++..+. ...++++.++|+.+++. +
T Consensus 19 ~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~ 84 (239)
T 1xxl_A 19 CRAEHRVLDIGAGAGHTALAFSPY------VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF--------P 84 (239)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGG------SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCS--------C
T ss_pred cCCCCEEEEEccCcCHHHHHHHHh------CCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCC--------C
Confidence 578899999999999999999987 369999999999975421 22478999999876542 3
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
+++||+|++... ..+..+ ...++..+.+ +|||||++++.....
T Consensus 85 ~~~fD~v~~~~~----l~~~~~-------~~~~l~~~~~------------------~LkpgG~l~~~~~~~ 127 (239)
T 1xxl_A 85 DDSFDIITCRYA----AHHFSD-------VRKAVREVAR------------------VLKQDGRFLLVDHYA 127 (239)
T ss_dssp TTCEEEEEEESC----GGGCSC-------HHHHHHHHHH------------------HEEEEEEEEEEEECB
T ss_pred CCcEEEEEECCc----hhhccC-------HHHHHHHHHH------------------HcCCCcEEEEEEcCC
Confidence 579999999542 223333 4567888887 999999999976554
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-13 Score=104.64 Aligned_cols=114 Identities=13% Similarity=0.088 Sum_probs=77.8
Q ss_pred HHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChh
Q 038391 30 IQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSN 102 (186)
Q Consensus 30 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~ 102 (186)
+......+.++.+|||+|||+|.++..+++. + ..+|+|+|+++.+++.+ ....+++++++|+.+...
T Consensus 22 ~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~- 95 (177)
T 2esr_A 22 IFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-G----MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAID- 95 (177)
T ss_dssp HHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-T----CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHH-
T ss_pred HHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-C----CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHH-
Confidence 4444443567889999999999999999987 2 36999999999987541 122468888888765211
Q ss_pred hHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHH--cCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 103 QVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLA--LGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 103 ~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
. ..++||+|+++.+. +.. .....+... .+ +|||||++++...
T Consensus 96 ---~---~~~~fD~i~~~~~~-----~~~-------~~~~~~~~l~~~~------------------~L~~gG~l~~~~~ 139 (177)
T 2esr_A 96 ---C---LTGRFDLVFLDPPY-----AKE-------TIVATIEALAAKN------------------LLSEQVMVVCETD 139 (177)
T ss_dssp ---H---BCSCEEEEEECCSS-----HHH-------HHHHHHHHHHHTT------------------CEEEEEEEEEEEE
T ss_pred ---h---hcCCCCEEEECCCC-----Ccc-------hHHHHHHHHHhCC------------------CcCCCcEEEEEEC
Confidence 1 13579999997531 111 122233333 35 9999999999887
Q ss_pred cCCCC
Q 038391 181 ESQDA 185 (186)
Q Consensus 181 ~~~~~ 185 (186)
..+.+
T Consensus 140 ~~~~~ 144 (177)
T 2esr_A 140 KTVLL 144 (177)
T ss_dssp TTCCC
T ss_pred Ccccc
Confidence 76543
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-13 Score=112.06 Aligned_cols=110 Identities=14% Similarity=0.167 Sum_probs=82.6
Q ss_pred HHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHh
Q 038391 31 QKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVR 105 (186)
Q Consensus 31 ~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~ 105 (186)
...+..++++.+|||+|||+|.++..+++.++. +.+|+|+|+++.++..+ ....+++++++|+.+.+.
T Consensus 14 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~---- 86 (284)
T 3gu3_A 14 VNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPE---GSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIEL---- 86 (284)
T ss_dssp HHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCT---TCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCC----
T ss_pred HHHHhccCCCCeEEEecCCCCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCc----
Confidence 334444678899999999999999999998753 47999999999987541 122379999999876542
Q ss_pred hhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 106 ALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 106 ~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
.++||+|++... ..+..+ ...++..+.+ +|||||++++....
T Consensus 87 -----~~~fD~v~~~~~----l~~~~~-------~~~~l~~~~~------------------~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 87 -----NDKYDIAICHAF----LLHMTT-------PETMLQKMIH------------------SVKKGGKIICFEPH 128 (284)
T ss_dssp -----SSCEEEEEEESC----GGGCSS-------HHHHHHHHHH------------------TEEEEEEEEEEECC
T ss_pred -----CCCeeEEEECCh----hhcCCC-------HHHHHHHHHH------------------HcCCCCEEEEEecc
Confidence 358999999652 122222 3477888887 99999999987654
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.42 E-value=9.7e-14 Score=119.48 Aligned_cols=112 Identities=21% Similarity=0.332 Sum_probs=82.4
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC--------------CCCeEEEEeeecCCChh
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC--------------DARVQTVSADVINLPSN 102 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~--------------~~~~~~~~~d~~~~~~~ 102 (186)
+.++.+|||+|||+|.++..+++.+++ +.+|+|+|+++.++..+.. ..+++++++|+.++...
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~ 157 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGE---HGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATA 157 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTT---TCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhc
Confidence 457889999999999999999998754 5799999999999765221 15899999998764210
Q ss_pred hHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 103 QVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 103 ~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
.....+.++||+|+++.. ..+..+ ...++.++.+ +|||||+|++..+..
T Consensus 158 --~~~~~~~~~fD~V~~~~~----l~~~~d-------~~~~l~~~~r------------------~LkpgG~l~i~~~~~ 206 (383)
T 4fsd_A 158 --EPEGVPDSSVDIVISNCV----CNLSTN-------KLALFKEIHR------------------VLRDGGELYFSDVYA 206 (383)
T ss_dssp --BSCCCCTTCEEEEEEESC----GGGCSC-------HHHHHHHHHH------------------HEEEEEEEEEEEEEE
T ss_pred --ccCCCCCCCEEEEEEccc----hhcCCC-------HHHHHHHHHH------------------HcCCCCEEEEEEecc
Confidence 000114679999999653 222223 4577888888 999999999986544
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-13 Score=113.18 Aligned_cols=119 Identities=23% Similarity=0.262 Sum_probs=80.4
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
++++.+|||+|||+|+++..+++.++. .++|+|+|+++.++... ....+++++++|+...... +...
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~---~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~----~~~~ 153 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKN---KGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDY----LLKN 153 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTT---CSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHH----HHHT
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCC---CCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchh----hhhc
Confidence 578999999999999999999998753 47999999999986541 1223788999987654321 0001
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHH-------HHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALS-------VELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
.++||+|++|++|+..|....+.... .......+..+.+ +|||||+|++.+.
T Consensus 154 ~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~------------------~LkpgG~lv~stc 212 (274)
T 3ajd_A 154 EIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGID------------------LLKKDGELVYSTC 212 (274)
T ss_dssp TCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHH------------------HEEEEEEEEEEES
T ss_pred cccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHH------------------hCCCCCEEEEEEC
Confidence 46899999999887666543211000 0123566777777 9999999999764
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.2e-13 Score=111.52 Aligned_cols=108 Identities=27% Similarity=0.311 Sum_probs=79.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
++++.+|||+|||+|.++..+++. + ..+|+|+|+++.++..+ ....+++++++|+.+.+..
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------- 129 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-G----IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD------- 129 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-T----CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-------
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-C----CCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccC-------
Confidence 478899999999999999998886 2 35999999999997541 1224689999998766431
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+.++||+|++... .+.. .........++..+.+ +|||||+|++.+..
T Consensus 130 ~~~~fD~v~~~~~-----l~~~--~~~~~~~~~~l~~~~~------------------~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 130 LGKEFDVISSQFS-----FHYA--FSTSESLDIAQRNIAR------------------HLRPGGYFIMTVPS 176 (298)
T ss_dssp CSSCEEEEEEESC-----GGGG--GSSHHHHHHHHHHHHH------------------TEEEEEEEEEEEEC
T ss_pred CCCCcCEEEECch-----hhhh--cCCHHHHHHHHHHHHH------------------hcCCCCEEEEEECC
Confidence 2578999999542 1110 0112335677888887 99999999998765
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-13 Score=112.31 Aligned_cols=102 Identities=19% Similarity=0.209 Sum_probs=78.3
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
.++.+|||+|||+|.++..+++. +.+|+|+|+++.++..+ ....+++++++|+.++... .
T Consensus 67 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-------~ 133 (285)
T 4htf_A 67 PQKLRVLDAGGGEGQTAIKMAER------GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH-------L 133 (285)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGG-------C
T ss_pred CCCCEEEEeCCcchHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhh-------c
Confidence 34679999999999999999997 47999999999987542 2226799999998776421 3
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
.++||+|++... ..+..+ ...++..+.+ +|||||.+++..+.
T Consensus 134 ~~~fD~v~~~~~----l~~~~~-------~~~~l~~~~~------------------~LkpgG~l~~~~~~ 175 (285)
T 4htf_A 134 ETPVDLILFHAV----LEWVAD-------PRSVLQTLWS------------------VLRPGGVLSLMFYN 175 (285)
T ss_dssp SSCEEEEEEESC----GGGCSC-------HHHHHHHHHH------------------TEEEEEEEEEEEEB
T ss_pred CCCceEEEECch----hhcccC-------HHHHHHHHHH------------------HcCCCeEEEEEEeC
Confidence 579999999542 122222 3567888887 99999999998764
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.1e-14 Score=114.15 Aligned_cols=105 Identities=19% Similarity=0.138 Sum_probs=75.6
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
++|.+|||||||+|..+..+++.. ..+|+|||+++.+++.+ ....+++++.+|+...... + +.+
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~-----~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~----~--~~~ 127 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAP-----IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPT----L--PDG 127 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSC-----EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGG----S--CTT
T ss_pred cCCCeEEEECCCccHHHHHHHHhC-----CcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhccc----c--ccc
Confidence 678999999999999999998763 35899999999997652 2345677888876543211 1 467
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
+||.|+.|........+.. .....++.++.+ +|||||+|++
T Consensus 128 ~FD~i~~D~~~~~~~~~~~------~~~~~~~~e~~r------------------vLkPGG~l~f 168 (236)
T 3orh_A 128 HFDGILYDTYPLSEETWHT------HQFNFIKNHAFR------------------LLKPGGVLTY 168 (236)
T ss_dssp CEEEEEECCCCCBGGGTTT------HHHHHHHHTHHH------------------HEEEEEEEEE
T ss_pred CCceEEEeeeecccchhhh------cchhhhhhhhhh------------------eeCCCCEEEE
Confidence 8999998764222222211 225677888888 9999999976
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-13 Score=108.10 Aligned_cols=101 Identities=17% Similarity=0.204 Sum_probs=76.0
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC--CCCCeEEEEeeecCCChhhHhhhCCCCCCcc
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH--CDARVQTVSADVINLPSNQVRALSPKQKGFS 115 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~--~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D 115 (186)
+++.+|||+|||+|.++..+++. +.+|+|+|+++.++..+. ...+++++++|+.+.+. + ++||
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~--------~-~~fD 108 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLA------GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEV--------P-TSID 108 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHT------TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCC--------C-SCCS
T ss_pred cCCCeEEEeCCCCCHHHHHHHhC------CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCC--------C-CCeE
Confidence 57889999999999999999997 479999999999876521 11478899998877642 2 7999
Q ss_pred EEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 116 VILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 116 ~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
+|++... .+.... .....++..+.+ +|||||.+++...
T Consensus 109 ~v~~~~~-----l~~~~~----~~~~~~l~~~~~------------------~LkpgG~l~i~~~ 146 (220)
T 3hnr_A 109 TIVSTYA-----FHHLTD----DEKNVAIAKYSQ------------------LLNKGGKIVFADT 146 (220)
T ss_dssp EEEEESC-----GGGSCH----HHHHHHHHHHHH------------------HSCTTCEEEEEEE
T ss_pred EEEECcc-----hhcCCh----HHHHHHHHHHHH------------------hcCCCCEEEEEec
Confidence 9999542 222221 112347777777 9999999999864
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-13 Score=106.07 Aligned_cols=86 Identities=20% Similarity=0.181 Sum_probs=52.0
Q ss_pred HHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCC-----CCeEEEEeeecCCChhhH
Q 038391 30 IQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCD-----ARVQTVSADVINLPSNQV 104 (186)
Q Consensus 30 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~-----~~~~~~~~d~~~~~~~~l 104 (186)
+.......+++.+|||+|||+|.++..+++..+ +.+|+|+|+++.++..+... .+++++++|+.+ .....
T Consensus 21 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~ 95 (215)
T 4dzr_A 21 AIRFLKRMPSGTRVIDVGTGSGCIAVSIALACP----GVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIER 95 (215)
T ss_dssp HHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCT----TEEEEEEECC-------------------CCHHHHHH-HHHHH
T ss_pred HHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCC----CCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhhh
Confidence 444443336788999999999999999999863 47999999999998763221 156666677654 11100
Q ss_pred hhhCCCCCCccEEEeCCCC
Q 038391 105 RALSPKQKGFSVILSDMCP 123 (186)
Q Consensus 105 ~~~~~~~~~~D~V~~d~~~ 123 (186)
. . ..++||+|++|.++
T Consensus 96 ~-~--~~~~fD~i~~npp~ 111 (215)
T 4dzr_A 96 A-E--RGRPWHAIVSNPPY 111 (215)
T ss_dssp H-H--TTCCBSEEEECCCC
T ss_pred h-h--ccCcccEEEECCCC
Confidence 0 0 13799999998764
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.41 E-value=5e-13 Score=117.59 Aligned_cols=118 Identities=25% Similarity=0.334 Sum_probs=87.7
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
++++.+|||+|||+|+++..+++.++. .++|+++|+++.++... ....+++++++|+...... + +
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~---~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~----~--~ 327 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKN---KGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEI----I--G 327 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTT---CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSS----S--C
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCC---CCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchh----h--c
Confidence 678899999999999999999998753 47999999999986541 1224688888888765421 0 2
Q ss_pred CCCccEEEeCCCCCCCCCcccchH-----------HHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAA-----------LSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
+++||+|++|++|+..|....... ....+....+..+.+ +|||||+|++.+
T Consensus 328 ~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~------------------~LkpGG~lvy~t 389 (450)
T 2yxl_A 328 EEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAAR------------------LVKPGGRLLYTT 389 (450)
T ss_dssp SSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHT------------------TEEEEEEEEEEE
T ss_pred cCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHH------------------hcCCCcEEEEEe
Confidence 368999999999887776433221 122233567888887 999999999876
Q ss_pred cc
Q 038391 180 LE 181 (186)
Q Consensus 180 ~~ 181 (186)
..
T Consensus 390 cs 391 (450)
T 2yxl_A 390 CS 391 (450)
T ss_dssp SC
T ss_pred CC
Confidence 54
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-12 Score=102.69 Aligned_cols=102 Identities=12% Similarity=0.064 Sum_probs=78.6
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC------CCCCeEEEEeeecCCChhhHhhhCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH------CDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~------~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.++++.+|||+|||+|.++..+++..+ ..+|+|+|+++.+++.+. ...+++++++|+.+...
T Consensus 37 ~~~~~~~vLDiG~G~G~~~~~la~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-------- 104 (204)
T 3e05_A 37 RLQDDLVMWDIGAGSASVSIEASNLMP----NGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD-------- 104 (204)
T ss_dssp TCCTTCEEEEETCTTCHHHHHHHHHCT----TSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT--------
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh--------
Confidence 367889999999999999999999853 489999999999975521 22579999998865432
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
...+||+|+++... . + ...++..+.+ .|||||++++....
T Consensus 105 ~~~~~D~i~~~~~~-----~--~-------~~~~l~~~~~------------------~LkpgG~l~~~~~~ 144 (204)
T 3e05_A 105 DLPDPDRVFIGGSG-----G--M-------LEEIIDAVDR------------------RLKSEGVIVLNAVT 144 (204)
T ss_dssp TSCCCSEEEESCCT-----T--C-------HHHHHHHHHH------------------HCCTTCEEEEEECB
T ss_pred cCCCCCEEEECCCC-----c--C-------HHHHHHHHHH------------------hcCCCeEEEEEecc
Confidence 12579999996532 1 1 4467888887 99999999998654
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=107.53 Aligned_cols=105 Identities=20% Similarity=0.232 Sum_probs=78.1
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
.++++.+|||+|||+|.++..+++.. +.+|+|+|+++.++..+ ....+++++++|+.++
T Consensus 61 ~~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--------- 126 (287)
T 1kpg_A 61 GLQPGMTLLDVGCGWGATMMRAVEKY-----DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF--------- 126 (287)
T ss_dssp TCCTTCEEEEETCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC---------
T ss_pred CCCCcCEEEEECCcccHHHHHHHHHc-----CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC---------
Confidence 35788999999999999999999776 36999999999986542 2335789999987543
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
+ ++||+|++... .+.... ......+..+.+ +|||||++++..+...
T Consensus 127 -~-~~fD~v~~~~~-----l~~~~~----~~~~~~l~~~~~------------------~LkpgG~l~~~~~~~~ 172 (287)
T 1kpg_A 127 -D-EPVDRIVSIGA-----FEHFGH----ERYDAFFSLAHR------------------LLPADGVMLLHTITGL 172 (287)
T ss_dssp -C-CCCSEEEEESC-----GGGTCT----TTHHHHHHHHHH------------------HSCTTCEEEEEEEEEC
T ss_pred -C-CCeeEEEEeCc-----hhhcCh----HHHHHHHHHHHH------------------hcCCCCEEEEEEecCC
Confidence 2 68999998532 111100 114567788887 9999999999887643
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-13 Score=106.19 Aligned_cols=115 Identities=20% Similarity=0.202 Sum_probs=81.7
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
++++.+|||+|||+|.++..+++.. ..+|+|+|+++.++..+ ....+++++++|+.+++. +.+
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~-----~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~--------~~~ 106 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGG-----FPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDF--------PSA 106 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTT-----CCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCS--------CSS
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcC-----CCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCC--------CCC
Confidence 4778899999999999999999872 23899999999987542 123578999999876542 357
Q ss_pred CccEEEeCCCC-----CCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 113 GFSVILSDMCP-----SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 113 ~~D~V~~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
+||+|+++... .....|... .........++..+.+ +|||||++++..+..+
T Consensus 107 ~fD~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~------------------~LkpgG~li~~~~~~~ 163 (215)
T 2pxx_A 107 SFDVVLEKGTLDALLAGERDPWTVS-SEGVHTVDQVLSEVSR------------------VLVPGGRFISMTSAAP 163 (215)
T ss_dssp CEEEEEEESHHHHHTTTCSCTTSCC-HHHHHHHHHHHHHHHH------------------HEEEEEEEEEEESCCH
T ss_pred cccEEEECcchhhhccccccccccc-cchhHHHHHHHHHHHH------------------hCcCCCEEEEEeCCCc
Confidence 89999985421 001111111 1223345678888887 9999999999987653
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.8e-14 Score=116.72 Aligned_cols=104 Identities=18% Similarity=0.243 Sum_probs=77.6
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-----CC----CCeEEEEeeecCCChhhHhhhCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-----CD----ARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-----~~----~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
++.+|||+|||+|.++..+++. +.+|+|+|+++.++..+. .. .+++++++|+.+++.
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-------- 147 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDL------GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-------- 147 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTT------TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC--------
T ss_pred CCCcEEEEeccCCHHHHHHHHc------CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc--------
Confidence 3459999999999999999987 479999999999976521 11 579999999987642
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
.++||+|++.. ...+..+ .+....++..+.+ +|||||+|++.++..+
T Consensus 148 -~~~fD~v~~~~----~~~~~~~----~~~~~~~l~~~~~------------------~L~pgG~l~~~~~~~~ 194 (299)
T 3g2m_A 148 -DKRFGTVVISS----GSINELD----EADRRGLYASVRE------------------HLEPGGKFLLSLAMSE 194 (299)
T ss_dssp -SCCEEEEEECH----HHHTTSC----HHHHHHHHHHHHH------------------HEEEEEEEEEEEECCH
T ss_pred -CCCcCEEEECC----cccccCC----HHHHHHHHHHHHH------------------HcCCCcEEEEEeecCc
Confidence 46899998631 1112222 1234577788887 9999999999987653
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-13 Score=108.03 Aligned_cols=106 Identities=20% Similarity=0.313 Sum_probs=78.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------C----CCCCeEEEEeeecCCChhhHh
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------H----CDARVQTVSADVINLPSNQVR 105 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~----~~~~~~~~~~d~~~~~~~~l~ 105 (186)
++++.+|||+|||+|.++..+++. +.+|+|+|+++.++..+ . ...+++++.+|+...+.
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---- 97 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK------GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSF---- 97 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCS----
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC------CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCC----
Confidence 468899999999999999999997 47999999999886431 1 12357888898876542
Q ss_pred hhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 106 ALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 106 ~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
+.++||+|++... ..+..+. .....++..+.+ +|||||+|++..+..
T Consensus 98 ----~~~~~D~v~~~~~----l~~~~~~----~~~~~~l~~~~~------------------~L~pgG~l~~~~~~~ 144 (235)
T 3sm3_A 98 ----HDSSFDFAVMQAF----LTSVPDP----KERSRIIKEVFR------------------VLKPGAYLYLVEFGQ 144 (235)
T ss_dssp ----CTTCEEEEEEESC----GGGCCCH----HHHHHHHHHHHH------------------HEEEEEEEEEEEEBC
T ss_pred ----CCCceeEEEEcch----hhcCCCH----HHHHHHHHHHHH------------------HcCCCeEEEEEECCc
Confidence 3578999999532 1222222 223467777777 999999999987654
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.39 E-value=6e-13 Score=105.86 Aligned_cols=103 Identities=25% Similarity=0.352 Sum_probs=76.7
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc---CCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL---HCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~---~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
..++.+|||+|||+|.++..+++. + ..+|+|+|+++.++..+ ....+++++++|+...+. +.++
T Consensus 41 ~~~~~~vLdiG~G~G~~~~~l~~~-~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~--------~~~~ 107 (243)
T 3bkw_A 41 EVGGLRIVDLGCGFGWFCRWAHEH-G----ASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHL--------PQDS 107 (243)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHT-T----CSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCC--------CTTC
T ss_pred ccCCCEEEEEcCcCCHHHHHHHHC-C----CCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccC--------CCCC
Confidence 457889999999999999999987 1 23999999999987542 122468899998876542 3578
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
||+|++... ..+..+ ...++..+.+ +|||||++++...+
T Consensus 108 fD~v~~~~~----l~~~~~-------~~~~l~~~~~------------------~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 108 FDLAYSSLA----LHYVED-------VARLFRTVHQ------------------ALSPGGHFVFSTEH 146 (243)
T ss_dssp EEEEEEESC----GGGCSC-------HHHHHHHHHH------------------HEEEEEEEEEEEEC
T ss_pred ceEEEEecc----ccccch-------HHHHHHHHHH------------------hcCcCcEEEEEeCC
Confidence 999999542 112222 4467777777 99999999998753
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-13 Score=107.21 Aligned_cols=104 Identities=18% Similarity=0.244 Sum_probs=78.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC-----CCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC-----DARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~-----~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
++++ +|||+|||+|.++..+++. +.+|+|+|+++.++..+.. ..++++.++|+.+.+. +.
T Consensus 28 ~~~~-~vLdiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~--------~~ 92 (202)
T 2kw5_A 28 IPQG-KILCLAEGEGRNACFLASL------GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDI--------VA 92 (202)
T ss_dssp SCSS-EEEECCCSCTHHHHHHHTT------TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSC--------CT
T ss_pred CCCC-CEEEECCCCCHhHHHHHhC------CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCC--------Cc
Confidence 4677 9999999999999999886 4799999999999765211 2278888888876542 35
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
++||+|++.. .+.. ......++..+.+ +|||||.+++..+..+.
T Consensus 93 ~~fD~v~~~~------~~~~-----~~~~~~~l~~~~~------------------~L~pgG~l~~~~~~~~~ 136 (202)
T 2kw5_A 93 DAWEGIVSIF------CHLP-----SSLRQQLYPKVYQ------------------GLKPGGVFILEGFAPEQ 136 (202)
T ss_dssp TTCSEEEEEC------CCCC-----HHHHHHHHHHHHT------------------TCCSSEEEEEEEECTTT
T ss_pred CCccEEEEEh------hcCC-----HHHHHHHHHHHHH------------------hcCCCcEEEEEEecccc
Confidence 7899999842 1111 1235677888888 99999999999876543
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.5e-13 Score=107.04 Aligned_cols=104 Identities=16% Similarity=0.174 Sum_probs=75.7
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-------CC----CCeEEEEeeecCCChhhHhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-------CD----ARVQTVSADVINLPSNQVRA 106 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-------~~----~~~~~~~~d~~~~~~~~l~~ 106 (186)
.++.+|||+|||+|.++..+++..+ ..+|+|+|+++.++..+. .. .+++++++|+......
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---- 99 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSF----FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKR---- 99 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTT----CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGG----
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCC----CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccccc----
Confidence 4678999999999999999999743 369999999999975421 11 2799999998654432
Q ss_pred hCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 107 LSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 107 ~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
.++||+|++... .+... ......++..+.+ +|||||.+++...
T Consensus 100 ----~~~fD~v~~~~~-----l~~~~----~~~~~~~l~~~~~------------------~LkpgG~li~~~~ 142 (217)
T 3jwh_A 100 ----FHGYDAATVIEV-----IEHLD----LSRLGAFERVLFE------------------FAQPKIVIVTTPN 142 (217)
T ss_dssp ----GCSCSEEEEESC-----GGGCC----HHHHHHHHHHHHT------------------TTCCSEEEEEEEB
T ss_pred ----CCCcCEEeeHHH-----HHcCC----HHHHHHHHHHHHH------------------HcCCCEEEEEccC
Confidence 468999998532 22222 1224577888888 9999998776643
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.39 E-value=9e-13 Score=107.80 Aligned_cols=124 Identities=19% Similarity=0.143 Sum_probs=79.9
Q ss_pred HcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----------cCCCCCeEEEEeeecCCChh
Q 038391 33 QYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----------LHCDARVQTVSADVINLPSN 102 (186)
Q Consensus 33 ~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----------~~~~~~~~~~~~d~~~~~~~ 102 (186)
.+...+++.+|||+|||+|.++..++++.+ +.+|+|+|+++.++.. .....+++++++|+.+....
T Consensus 30 ~~~~~~~~~~VLDlG~G~G~~~l~la~~~~----~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~ 105 (260)
T 2ozv_A 30 SLVADDRACRIADLGAGAGAAGMAVAARLE----KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKA 105 (260)
T ss_dssp HTCCCCSCEEEEECCSSSSHHHHHHHHHCT----TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHH
T ss_pred HHhcccCCCEEEEeCChHhHHHHHHHHhCC----CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhh
Confidence 344456788999999999999999999864 4799999999988543 11223699999998876321
Q ss_pred hHhhhCCCCCCccEEEeCCCCCCCC-CcccchHHH------HHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEE
Q 038391 103 QVRALSPKQKGFSVILSDMCPSVSG-ITTKDAALS------VELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHL 175 (186)
Q Consensus 103 ~l~~~~~~~~~~D~V~~d~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~l 175 (186)
.+... .+.++||+|++|++..... ....+.... ......++..+.+ +|||||+|
T Consensus 106 ~~~~~-~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~------------------~LkpgG~l 166 (260)
T 2ozv_A 106 RVEAG-LPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASA------------------IMVSGGQL 166 (260)
T ss_dssp HHHTT-CCTTCEEEEEECCCC---------------------CCHHHHHHHHHH------------------HEEEEEEE
T ss_pred hhhhc-cCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHH------------------HcCCCCEE
Confidence 11000 1356899999997643321 110000000 0114567777777 99999999
Q ss_pred EEEE
Q 038391 176 VIKL 179 (186)
Q Consensus 176 vi~~ 179 (186)
++.+
T Consensus 167 ~~~~ 170 (260)
T 2ozv_A 167 SLIS 170 (260)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9865
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=105.15 Aligned_cols=104 Identities=13% Similarity=0.020 Sum_probs=77.8
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC----CCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH----CDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~----~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
.+++.+|||+|||+|.++..+++.. ..+|+|+|+++.++..+. ...+++++++|+..++. +.+
T Consensus 91 ~~~~~~vLDiG~G~G~~~~~l~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~--------~~~ 157 (254)
T 1xtp_A 91 GHGTSRALDCGAGIGRITKNLLTKL-----YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATL--------PPN 157 (254)
T ss_dssp TCCCSEEEEETCTTTHHHHHTHHHH-----CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCC--------CSS
T ss_pred ccCCCEEEEECCCcCHHHHHHHHhh-----cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCC--------CCC
Confidence 4578899999999999999999884 268999999999975521 11578899998876542 357
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
+||+|++... .+.... .....++..+.+ +|||||+|++...
T Consensus 158 ~fD~v~~~~~-----l~~~~~----~~~~~~l~~~~~------------------~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 158 TYDLIVIQWT-----AIYLTD----ADFVKFFKHCQQ------------------ALTPNGYIFFKEN 198 (254)
T ss_dssp CEEEEEEESC-----GGGSCH----HHHHHHHHHHHH------------------HEEEEEEEEEEEE
T ss_pred CeEEEEEcch-----hhhCCH----HHHHHHHHHHHH------------------hcCCCeEEEEEec
Confidence 8999999432 222211 225577777887 9999999999875
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.7e-13 Score=109.20 Aligned_cols=104 Identities=18% Similarity=0.242 Sum_probs=76.3
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
.++.+|||+|||+|..+..+++.+++ +++|+++|+++.++..+ ....+++++++|+.+......... .
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~--~ 133 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPD---DGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEG--G 133 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCT---TCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHH--C
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhcc--C
Confidence 45789999999999999999998764 58999999999998762 234589999998765322111000 1
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
.++||+|++|.. ... ....++.+.+ +|||||+|++.
T Consensus 134 ~~~fD~V~~d~~--------~~~------~~~~l~~~~~------------------~LkpGG~lv~d 169 (242)
T 3r3h_A 134 EHQFDFIFIDAD--------KTN------YLNYYELALK------------------LVTPKGLIAID 169 (242)
T ss_dssp SSCEEEEEEESC--------GGG------HHHHHHHHHH------------------HEEEEEEEEEE
T ss_pred CCCEeEEEEcCC--------hHH------hHHHHHHHHH------------------hcCCCeEEEEE
Confidence 368999999752 111 3346677777 99999999984
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.9e-13 Score=102.04 Aligned_cols=107 Identities=15% Similarity=0.062 Sum_probs=74.2
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC------CCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH------CDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~------~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.++.+|||+|||+|.++..+++. +..+|+|+|+++.+++.++ ...+++++++|+.+.... + +.
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~--~~ 111 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-----GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAA----G--TT 111 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-----TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHH----C--CS
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-----CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhh----c--cC
Confidence 46889999999999999988875 2468999999999975421 125799999998654221 1 25
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHH--cCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLA--LGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
++||+|++|.+.. +.. ......+..+ .+ +|||||.+++.....+
T Consensus 112 ~~fD~i~~~~p~~----~~~------~~~~~~l~~~~~~~------------------~L~pgG~l~~~~~~~~ 157 (189)
T 3p9n_A 112 SPVDLVLADPPYN----VDS------ADVDAILAALGTNG------------------WTREGTVAVVERATTC 157 (189)
T ss_dssp SCCSEEEECCCTT----SCH------HHHHHHHHHHHHSS------------------SCCTTCEEEEEEETTS
T ss_pred CCccEEEECCCCC----cch------hhHHHHHHHHHhcC------------------ccCCCeEEEEEecCCC
Confidence 7999999986521 110 1122333333 33 8999999999876543
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.38 E-value=5.1e-13 Score=106.16 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=75.9
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-----CCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-----CDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-----~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
.++.+|||+|||+|.++..+++. +.+|+|+|+++.++..+. ...+++++++|+.+.+. .+
T Consensus 36 ~~~~~vLdiG~G~G~~~~~l~~~------~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~---------~~ 100 (246)
T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPK------FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI---------NR 100 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGG------SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCC---------SC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHC------CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCc---------cC
Confidence 36789999999999999999987 479999999999975521 11268888888876542 26
Q ss_pred CccEEEeCC-CCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 113 GFSVILSDM-CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 113 ~~D~V~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+||+|++.. . ..+..+ ......++..+.+ +|||||.+++.+.+
T Consensus 101 ~fD~v~~~~~~----l~~~~~----~~~~~~~l~~~~~------------------~L~pgG~l~~~~~~ 144 (246)
T 1y8c_A 101 KFDLITCCLDS----TNYIID----SDDLKKYFKAVSN------------------HLKEGGVFIFDINS 144 (246)
T ss_dssp CEEEEEECTTG----GGGCCS----HHHHHHHHHHHHT------------------TEEEEEEEEEEEEC
T ss_pred CceEEEEcCcc----ccccCC----HHHHHHHHHHHHH------------------hcCCCcEEEEEecC
Confidence 899999843 1 112211 1235677888888 99999999997653
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-13 Score=106.38 Aligned_cols=108 Identities=23% Similarity=0.266 Sum_probs=77.6
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-----CCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-----CDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-----~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.+++.+|||+|||+|.++..++... +.+|+|+|+++.++..+. ...+++++++|+.+.+. +.
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~--------~~ 87 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVED-----GYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPF--------KD 87 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHT-----TCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCS--------CT
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhC-----CCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCC--------CC
Confidence 4678899999999999855554442 579999999999976521 22468889998876542 35
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
++||+|++... .+... ......++..+.+ +|||||.+++..+..++
T Consensus 88 ~~fD~v~~~~~-----l~~~~----~~~~~~~l~~~~~------------------~LkpgG~l~~~~~~~~~ 133 (209)
T 2p8j_A 88 ESMSFVYSYGT-----IFHMR----KNDVKEAIDEIKR------------------VLKPGGLACINFLTTKD 133 (209)
T ss_dssp TCEEEEEECSC-----GGGSC----HHHHHHHHHHHHH------------------HEEEEEEEEEEEEETTS
T ss_pred CceeEEEEcCh-----HHhCC----HHHHHHHHHHHHH------------------HcCCCcEEEEEEecccc
Confidence 78999998432 11111 1235577777887 99999999999886543
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.38 E-value=6.3e-13 Score=105.56 Aligned_cols=104 Identities=27% Similarity=0.316 Sum_probs=76.4
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
++++.+|||+|||+|.++..+++.+++ .++|+|+|+++.++.. .....+++++++|+.+.... .. ..+
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~---~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~---~~~ 142 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGW---EGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEY--RA---LVP 142 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCT---TSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGG--TT---TCC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCC---CeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchh--hc---ccC
Confidence 567899999999999999999998754 4799999999977543 22236899999998753210 00 135
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
+||+|+++.+ ..+ .....+..+.+ +|||||++++..
T Consensus 143 ~~D~v~~~~~-------~~~------~~~~~l~~~~~------------------~LkpgG~l~~~~ 178 (227)
T 1g8a_A 143 KVDVIFEDVA-------QPT------QAKILIDNAEV------------------YLKRGGYGMIAV 178 (227)
T ss_dssp CEEEEEECCC-------STT------HHHHHHHHHHH------------------HEEEEEEEEEEE
T ss_pred CceEEEECCC-------CHh------HHHHHHHHHHH------------------hcCCCCEEEEEE
Confidence 8999999763 111 12344777777 999999999983
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-12 Score=110.53 Aligned_cols=122 Identities=23% Similarity=0.235 Sum_probs=88.0
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCC
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINL 99 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~ 99 (186)
+..........+++.+|||+|||+|.++..++...++ ..+|+|+|+++.++..+ ... ++++.++|+.++
T Consensus 191 la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~---~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~ 266 (354)
T 3tma_A 191 LAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGP---TSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHL 266 (354)
T ss_dssp HHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCT---TSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGG
T ss_pred HHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCC---CceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhC
Confidence 3333334444678899999999999999999998632 48999999999997541 222 799999998876
Q ss_pred ChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 100 PSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 100 ~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
+.. ...||+|++|+++. ....+......+...++..+.+ +|||||++++.+
T Consensus 267 ~~~--------~~~~D~Ii~npPyg---~r~~~~~~~~~~~~~~~~~~~~------------------~LkpgG~l~i~t 317 (354)
T 3tma_A 267 PRF--------FPEVDRILANPPHG---LRLGRKEGLFHLYWDFLRGALA------------------LLPPGGRVALLT 317 (354)
T ss_dssp GGT--------CCCCSEEEECCCSC---C----CHHHHHHHHHHHHHHHH------------------TSCTTCEEEEEE
T ss_pred ccc--------cCCCCEEEECCCCc---CccCCcccHHHHHHHHHHHHHH------------------hcCCCcEEEEEe
Confidence 432 35689999998632 2222223334455678888887 999999999987
Q ss_pred cc
Q 038391 180 LE 181 (186)
Q Consensus 180 ~~ 181 (186)
.+
T Consensus 318 ~~ 319 (354)
T 3tma_A 318 LR 319 (354)
T ss_dssp SC
T ss_pred CC
Confidence 54
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=3.9e-13 Score=106.74 Aligned_cols=107 Identities=16% Similarity=0.176 Sum_probs=74.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCC-
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSP- 109 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~- 109 (186)
.++.+|||+|||+|..+..+++.+++ +++|+++|+++.++..+ ....+++++++|+.+... .+..
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~----~~~~~ 129 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQP---GARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIP----QLKKK 129 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCT---TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGG----GTTTT
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCC---CCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHH----HHHHh
Confidence 46789999999999999999998754 58999999999986542 233569999998754211 1110
Q ss_pred -CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 110 -KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 110 -~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
..++||+|+++.. .+.. ......+... + +|||||+|++....
T Consensus 130 ~~~~~fD~V~~d~~-----~~~~------~~~~~~~~~~-~------------------~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 130 YDVDTLDMVFLDHW-----KDRY------LPDTLLLEKC-G------------------LLRKGTVLLADNVI 172 (221)
T ss_dssp SCCCCCSEEEECSC-----GGGH------HHHHHHHHHT-T------------------CCCTTCEEEESCCC
T ss_pred cCCCceEEEEEcCC-----cccc------hHHHHHHHhc-c------------------ccCCCeEEEEeCCC
Confidence 1268999999752 1111 1122344444 6 99999999986543
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.5e-13 Score=110.35 Aligned_cols=102 Identities=25% Similarity=0.345 Sum_probs=78.6
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-CCCCeEEEEeeecCCChhhHhhhCCCCCCcc
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-CDARVQTVSADVINLPSNQVRALSPKQKGFS 115 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D 115 (186)
++++.+|||+|||+|.++..+++. +.+|+|+|+++.|+..+. ...++++..+|+.+++. .++||
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~---------~~~fD 119 (279)
T 3ccf_A 55 PQPGEFILDLGCGTGQLTEKIAQS------GAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRV---------DKPLD 119 (279)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCC---------SSCEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHhC------CCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCc---------CCCcC
Confidence 467889999999999999999983 589999999999976522 12578899998876542 46899
Q ss_pred EEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 116 VILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 116 ~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
+|++... ..+..+ ...++.++.+ +|||||++++..+..
T Consensus 120 ~v~~~~~----l~~~~d-------~~~~l~~~~~------------------~LkpgG~l~~~~~~~ 157 (279)
T 3ccf_A 120 AVFSNAM----LHWVKE-------PEAAIASIHQ------------------ALKSGGRFVAEFGGK 157 (279)
T ss_dssp EEEEESC----GGGCSC-------HHHHHHHHHH------------------HEEEEEEEEEEEECT
T ss_pred EEEEcch----hhhCcC-------HHHHHHHHHH------------------hcCCCcEEEEEecCC
Confidence 9999542 222233 4467788887 999999999987654
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.3e-12 Score=107.27 Aligned_cols=105 Identities=17% Similarity=0.238 Sum_probs=78.8
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
.++++.+|||+|||+|.++..+++.+ +.+|+|+|+++.++..+ ....+++++++|+.++
T Consensus 87 ~~~~~~~vLDiGcG~G~~~~~la~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--------- 152 (318)
T 2fk8_A 87 DLKPGMTLLDIGCGWGTTMRRAVERF-----DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--------- 152 (318)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---------
T ss_pred CCCCcCEEEEEcccchHHHHHHHHHC-----CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC---------
Confidence 35788999999999999999999986 36999999999997542 2235689999987654
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
.++||+|++... .+.... .....++..+.+ +|||||++++..+...
T Consensus 153 --~~~fD~v~~~~~-----l~~~~~----~~~~~~l~~~~~------------------~LkpgG~l~~~~~~~~ 198 (318)
T 2fk8_A 153 --AEPVDRIVSIEA-----FEHFGH----ENYDDFFKRCFN------------------IMPADGRMTVQSSVSY 198 (318)
T ss_dssp --CCCCSEEEEESC-----GGGTCG----GGHHHHHHHHHH------------------HSCTTCEEEEEEEECC
T ss_pred --CCCcCEEEEeCh-----HHhcCH----HHHHHHHHHHHH------------------hcCCCcEEEEEEeccC
Confidence 258999998532 211100 114567778887 9999999999887654
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.38 E-value=6.3e-13 Score=101.71 Aligned_cols=117 Identities=13% Similarity=0.093 Sum_probs=78.2
Q ss_pred HHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChh
Q 038391 30 IQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSN 102 (186)
Q Consensus 30 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~ 102 (186)
+........++.+|||+|||+|.++..+++. + ..+|+|+|+++.+++.+ ....+++++++|+.+...
T Consensus 35 ~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~-~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~- 108 (187)
T 2fhp_A 35 IFNMIGPYFDGGMALDLYSGSGGLAIEAVSR-G----MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALE- 108 (187)
T ss_dssp HHHHHCSCCSSCEEEETTCTTCHHHHHHHHT-T----CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHH-
T ss_pred HHHHHHhhcCCCCEEEeCCccCHHHHHHHHc-C----CCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHH-
Confidence 3344433457889999999999999998885 1 46999999999997542 123478999998865321
Q ss_pred hHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHH--cCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 103 QVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLA--LGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 103 ~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
.+....++||+|+++.+. +... ....+... .+ +|||||++++.+-
T Consensus 109 ---~~~~~~~~fD~i~~~~~~-----~~~~-------~~~~~~~l~~~~------------------~L~~gG~l~~~~~ 155 (187)
T 2fhp_A 109 ---QFYEEKLQFDLVLLDPPY-----AKQE-------IVSQLEKMLERQ------------------LLTNEAVIVCETD 155 (187)
T ss_dssp ---HHHHTTCCEEEEEECCCG-----GGCC-------HHHHHHHHHHTT------------------CEEEEEEEEEEEE
T ss_pred ---HHHhcCCCCCEEEECCCC-----Cchh-------HHHHHHHHHHhc------------------ccCCCCEEEEEeC
Confidence 111124689999997641 1111 11222222 55 9999999999877
Q ss_pred cCCCC
Q 038391 181 ESQDA 185 (186)
Q Consensus 181 ~~~~~ 185 (186)
..+.+
T Consensus 156 ~~~~~ 160 (187)
T 2fhp_A 156 KTVKL 160 (187)
T ss_dssp TTCCC
T ss_pred Ccccc
Confidence 66543
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.5e-12 Score=103.04 Aligned_cols=102 Identities=18% Similarity=0.259 Sum_probs=73.8
Q ss_pred CCCEEEEEcccCChHHHHHHHH---hCCCCCCCeEEEEeCCCCCCCCcC-CCCCeEEEEeeecCCChhhHhhhCCCCCCc
Q 038391 39 PGSSVLDLGCAPGAWLQVACQS---LGPLDNGGSVVGIDVKKVKVPSLH-CDARVQTVSADVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~---~~~~~~~~~v~gvDis~~~i~~~~-~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~ 114 (186)
++.+|||+|||+|..+..+++. +.+ +++|+|||+++.++..+. ...+++++++|+.+... +... ...+|
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~---~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~--l~~~--~~~~f 153 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGI---DCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTT--FEHL--REMAH 153 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTC---CCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGG--GGGG--SSSCS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCC---CCEEEEEeCChHHHHHHhccCCceEEEECcchhHHH--HHhh--ccCCC
Confidence 4679999999999999999987 333 589999999999987643 24689999999876410 1001 23479
Q ss_pred cEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHc-CCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 115 SVILSDMCPSVSGITTKDAALSVELGMRAVDLAL-GPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 115 D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
|+|+++.. +. + ....+..+. . +|||||+|++..
T Consensus 154 D~I~~d~~------~~-~-------~~~~l~~~~r~------------------~LkpGG~lv~~d 187 (236)
T 2bm8_A 154 PLIFIDNA------HA-N-------TFNIMKWAVDH------------------LLEEGDYFIIED 187 (236)
T ss_dssp SEEEEESS------CS-S-------HHHHHHHHHHH------------------TCCTTCEEEECS
T ss_pred CEEEECCc------hH-h-------HHHHHHHHHHh------------------hCCCCCEEEEEe
Confidence 99999763 11 1 234555544 4 799999999954
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.8e-13 Score=101.55 Aligned_cols=107 Identities=19% Similarity=0.188 Sum_probs=78.7
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-CCCCeEEEEeeecCCChhhHhhhCCCCCCcc
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-CDARVQTVSADVINLPSNQVRALSPKQKGFS 115 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D 115 (186)
++++.+|||+|||+|.++..+++. +.+|+|+|+++.++..+. ...+++++++|+.+.+. +.++||
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~--------~~~~~D 109 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ------GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQI--------SETDFD 109 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT------TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCC--------CCCCEE
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC------CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCC--------CCCcee
Confidence 568899999999999999999987 479999999998876522 22458888898876532 357899
Q ss_pred EEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 116 VILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 116 ~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
+|+++.. ..+... .......+..+.+ +|||||.+++......
T Consensus 110 ~i~~~~~----~~~~~~----~~~~~~~l~~~~~------------------~l~~~G~l~~~~~~~~ 151 (195)
T 3cgg_A 110 LIVSAGN----VMGFLA----EDGREPALANIHR------------------ALGADGRAVIGFGAGR 151 (195)
T ss_dssp EEEECCC----CGGGSC----HHHHHHHHHHHHH------------------HEEEEEEEEEEEETTS
T ss_pred EEEECCc----HHhhcC----hHHHHHHHHHHHH------------------HhCCCCEEEEEeCCCC
Confidence 9999531 112111 1224567777777 9999999999876554
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.5e-13 Score=107.40 Aligned_cols=111 Identities=19% Similarity=0.233 Sum_probs=78.6
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCC-CCeEEEEeeecC
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCD-ARVQTVSADVIN 98 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~-~~~~~~~~d~~~ 98 (186)
++..+......+++.+|||+|||+|..+..+++.+++ +++|+++|+++.++.. .... .+++++++|+.+
T Consensus 44 ~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~ 120 (221)
T 3dr5_A 44 LLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLAD---NTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLD 120 (221)
T ss_dssp HHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCT---TSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHH
T ss_pred HHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHH
Confidence 3443333332344559999999999999999998764 6899999999998654 2233 579999998765
Q ss_pred CChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 99 LPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 99 ~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
.... + +.++||+|+++... .+ ....+..+.+ +|||||+|++.
T Consensus 121 ~l~~----~--~~~~fD~V~~d~~~-------~~-------~~~~l~~~~~------------------~LkpGG~lv~d 162 (221)
T 3dr5_A 121 VMSR----L--ANDSYQLVFGQVSP-------MD-------LKALVDAAWP------------------LLRRGGALVLA 162 (221)
T ss_dssp HGGG----S--CTTCEEEEEECCCT-------TT-------HHHHHHHHHH------------------HEEEEEEEEET
T ss_pred HHHH----h--cCCCcCeEEEcCcH-------HH-------HHHHHHHHHH------------------HcCCCcEEEEe
Confidence 3211 1 25789999997531 11 2346777777 99999999984
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.37 E-value=3e-12 Score=107.90 Aligned_cols=116 Identities=22% Similarity=0.224 Sum_probs=79.7
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
+++|.+|||+|||+|+++..+++.+++ .++|+++|+++.++.. .....+++++++|+.+..... . .
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~---~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~-~----~ 171 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKN---QGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSD-P----R 171 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTC-G----G
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccc-c----c
Confidence 578999999999999999999998864 5899999999998654 112247899999987654210 0 0
Q ss_pred CCCccEEEeCCCCCCCCCcccchH-------------HHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAA-------------LSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
..+||.|++|++|+..|....... ....+....+..+.+ +|+ ||+||.
T Consensus 172 ~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~------------------~l~-gG~lvY 232 (309)
T 2b9e_A 172 YHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALT------------------FPS-LQRLVY 232 (309)
T ss_dssp GTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTT------------------CTT-CCEEEE
T ss_pred cCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHh------------------ccC-CCEEEE
Confidence 147999999999988776543211 112233456666666 777 999997
Q ss_pred EE
Q 038391 178 KL 179 (186)
Q Consensus 178 ~~ 179 (186)
.+
T Consensus 233 sT 234 (309)
T 2b9e_A 233 ST 234 (309)
T ss_dssp EE
T ss_pred EC
Confidence 65
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=4.9e-12 Score=110.13 Aligned_cols=106 Identities=18% Similarity=0.252 Sum_probs=78.2
Q ss_pred CCCCEEEEEccc------CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 38 KPGSSVLDLGCA------PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 38 ~~~~~vLDlGcG------~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.++.+||||||| +|+.+..+++.+.+ +++|+|+|+++.|.. ...+++++++|+.+++.. ..+....
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP---~a~V~GVDiSp~m~~---~~~rI~fv~GDa~dlpf~--~~l~~~d 286 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFP---RGQIYGLDIMDKSHV---DELRIRTIQGDQNDAEFL--DRIARRY 286 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCT---TCEEEEEESSCCGGG---CBTTEEEEECCTTCHHHH--HHHHHHH
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCC---CCEEEEEECCHHHhh---cCCCcEEEEecccccchh--hhhhccc
Confidence 457899999999 78888888876543 589999999999843 346899999999875432 1110013
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
++||+|++++. +... ....++.++.+ +|||||+|+|..++
T Consensus 287 ~sFDlVisdgs------H~~~------d~~~aL~el~r------------------vLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 287 GPFDIVIDDGS------HINA------HVRTSFAALFP------------------HVRPGGLYVIEDMW 326 (419)
T ss_dssp CCEEEEEECSC------CCHH------HHHHHHHHHGG------------------GEEEEEEEEEECGG
T ss_pred CCccEEEECCc------ccch------hHHHHHHHHHH------------------hcCCCeEEEEEecc
Confidence 68999999652 2221 24578888888 99999999998766
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.37 E-value=9.1e-13 Score=100.07 Aligned_cols=100 Identities=18% Similarity=0.177 Sum_probs=73.5
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
++++.+|||+|||+|.++..+++.++ +.+|+|+|+++.+++.+ ....++ ++++|.... .+.
T Consensus 23 ~~~~~~vldiG~G~G~~~~~l~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~-~~~------ 90 (178)
T 3hm2_A 23 PKPHETLWDIGGGSGSIAIEWLRSTP----QTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRA-FDD------ 90 (178)
T ss_dssp CCTTEEEEEESTTTTHHHHHHHTTSS----SEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGG-GGG------
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHCC----CCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhh-hhc------
Confidence 57888999999999999999999864 58999999999986541 222367 777776431 110
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
..++||+|+++... +. ...+..+.+ .|||||++++..+.
T Consensus 91 ~~~~~D~i~~~~~~-----~~----------~~~l~~~~~------------------~L~~gG~l~~~~~~ 129 (178)
T 3hm2_A 91 VPDNPDVIFIGGGL-----TA----------PGVFAAAWK------------------RLPVGGRLVANAVT 129 (178)
T ss_dssp CCSCCSEEEECC-T-----TC----------TTHHHHHHH------------------TCCTTCEEEEEECS
T ss_pred cCCCCCEEEECCcc-----cH----------HHHHHHHHH------------------hcCCCCEEEEEeec
Confidence 12789999996531 11 246677777 99999999998764
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.37 E-value=4e-13 Score=105.88 Aligned_cols=103 Identities=16% Similarity=0.201 Sum_probs=74.9
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-------CC----CCeEEEEeeecCCChhhHhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-------CD----ARVQTVSADVINLPSNQVRA 106 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-------~~----~~~~~~~~d~~~~~~~~l~~ 106 (186)
.++.+|||+|||+|.++..+++..+ ..+|+|+|+++.++..+. .. .+++++++|+......
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---- 99 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKS----FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKR---- 99 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTT----CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGG----
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCC----CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccc----
Confidence 4678999999999999999998743 379999999999976521 11 1799999998655432
Q ss_pred hCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 107 LSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 107 ~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
.++||+|++... .+... ......++..+.+ +|||||.+++..
T Consensus 100 ----~~~fD~V~~~~~-----l~~~~----~~~~~~~l~~~~~------------------~LkpgG~~i~~~ 141 (219)
T 3jwg_A 100 ----FSGYDAATVIEV-----IEHLD----ENRLQAFEKVLFE------------------FTRPQTVIVSTP 141 (219)
T ss_dssp ----GTTCSEEEEESC-----GGGCC----HHHHHHHHHHHHT------------------TTCCSEEEEEEE
T ss_pred ----cCCCCEEEEHHH-----HHhCC----HHHHHHHHHHHHH------------------hhCCCEEEEEcc
Confidence 468999998532 22222 1124577888888 999999766554
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.9e-13 Score=106.77 Aligned_cols=98 Identities=15% Similarity=0.218 Sum_probs=74.8
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
.++.+|||+|||+|.++..+++..+ +++|+++|+++.++.. .....+++++++|+.+..... .
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------~ 139 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISD----DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENV------N 139 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCT----TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHH------T
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhh------c
Confidence 4678999999999999999998543 5899999999998654 223358999999987653201 1
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
.++||+|+++... .. ....+..+.+ +|||||+|++
T Consensus 140 ~~~fD~V~~~~~~--------~~------~~~~l~~~~~------------------~LkpgG~lv~ 174 (232)
T 3ntv_A 140 DKVYDMIFIDAAK--------AQ------SKKFFEIYTP------------------LLKHQGLVIT 174 (232)
T ss_dssp TSCEEEEEEETTS--------SS------HHHHHHHHGG------------------GEEEEEEEEE
T ss_pred cCCccEEEEcCcH--------HH------HHHHHHHHHH------------------hcCCCeEEEE
Confidence 4789999997531 11 3457777887 9999999988
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-12 Score=102.54 Aligned_cols=99 Identities=15% Similarity=0.193 Sum_probs=75.6
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
.++++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.+ ....+++++++|+.+...
T Consensus 52 ~~~~~~~vLDlGcG~G~~~~~la~~------~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~------- 118 (204)
T 3njr_A 52 APRRGELLWDIGGGSGSVSVEWCLA------GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALA------- 118 (204)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGT-------
T ss_pred CCCCCCEEEEecCCCCHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcc-------
Confidence 3678899999999999999999997 47999999999997542 122379999998865211
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
...+||+|+++.. . + .. ++..+.+ .|||||++++.....
T Consensus 119 -~~~~~D~v~~~~~-----~---~-------~~-~l~~~~~------------------~LkpgG~lv~~~~~~ 157 (204)
T 3njr_A 119 -DLPLPEAVFIGGG-----G---S-------QA-LYDRLWE------------------WLAPGTRIVANAVTL 157 (204)
T ss_dssp -TSCCCSEEEECSC-----C---C-------HH-HHHHHHH------------------HSCTTCEEEEEECSH
T ss_pred -cCCCCCEEEECCc-----c---c-------HH-HHHHHHH------------------hcCCCcEEEEEecCc
Confidence 1247999998542 1 2 33 6777777 999999999987653
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-12 Score=101.56 Aligned_cols=97 Identities=21% Similarity=0.164 Sum_probs=73.6
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.++++.+|||+|||+|.++..+++. +.+|+|+|+++.++..+ ....+++++++|+.+....
T Consensus 74 ~~~~~~~vLdiG~G~G~~~~~la~~------~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~------- 140 (210)
T 3lbf_A 74 ELTPQSRVLEIGTGSGYQTAILAHL------VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQA------- 140 (210)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHH------SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG-------
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHh------CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCcc-------
Confidence 4678999999999999999999998 47999999999987542 1224799999998765432
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
.++||+|+++... .+..+ .+.+ .|||||+|++.+-.
T Consensus 141 -~~~~D~i~~~~~~----~~~~~-------------~~~~------------------~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 141 -RAPFDAIIVTAAP----PEIPT-------------ALMT------------------QLDEGGILVLPVGE 176 (210)
T ss_dssp -GCCEEEEEESSBC----SSCCT-------------HHHH------------------TEEEEEEEEEEECS
T ss_pred -CCCccEEEEccch----hhhhH-------------HHHH------------------hcccCcEEEEEEcC
Confidence 4689999997532 12221 2344 89999999998765
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.36 E-value=6.7e-13 Score=104.56 Aligned_cols=104 Identities=21% Similarity=0.276 Sum_probs=76.9
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-----CCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-----CDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-----~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
++++.+|||+|||+|.++..+++. +.+|+|+|+++.++..+. ...+++++++|+.+.+. +.
T Consensus 36 ~~~~~~vLDlG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~--------~~ 101 (227)
T 1ve3_A 36 MKKRGKVLDLACGVGGFSFLLEDY------GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSF--------ED 101 (227)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCS--------CT
T ss_pred cCCCCeEEEEeccCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCC--------CC
Confidence 456889999999999999999987 359999999999875421 12678999999876542 35
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
++||+|+++... ..+.. .....++..+.+ +|||||.+++....
T Consensus 102 ~~~D~v~~~~~~---~~~~~------~~~~~~l~~~~~------------------~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 102 KTFDYVIFIDSI---VHFEP------LELNQVFKEVRR------------------VLKPSGKFIMYFTD 144 (227)
T ss_dssp TCEEEEEEESCG---GGCCH------HHHHHHHHHHHH------------------HEEEEEEEEEEEEC
T ss_pred CcEEEEEEcCch---HhCCH------HHHHHHHHHHHH------------------HcCCCcEEEEEecC
Confidence 689999995420 01111 124567777777 99999999998654
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.36 E-value=9.4e-13 Score=105.44 Aligned_cols=114 Identities=17% Similarity=0.129 Sum_probs=80.8
Q ss_pred cCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc---CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 34 YKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL---HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 34 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~---~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
...++++.+|||+|||+|.++..+++. +.+|+|+|+++.++..+ ....+++++++|+.+..... .+. .
T Consensus 51 ~~~~~~~~~vLD~GcG~G~~~~~la~~------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~--~~~-~ 121 (245)
T 3ggd_A 51 ELLFNPELPLIDFACGNGTQTKFLSQF------FPRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAA--QIH-S 121 (245)
T ss_dssp TTTSCTTSCEEEETCTTSHHHHHHHHH------SSCEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHH--HHH-H
T ss_pred hhccCCCCeEEEEcCCCCHHHHHHHHh------CCCEEEEECCHHHHHHHHHhCcccCceEEECccccccccc--ccc-c
Confidence 334678899999999999999999998 35899999999997652 23347999999987754321 110 0
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
...||+|+++.. .+.... +....++..+.+ +|||||+|+|..+..+
T Consensus 122 ~~~~d~v~~~~~-----~~~~~~----~~~~~~l~~~~~------------------~LkpgG~l~i~~~~~~ 167 (245)
T 3ggd_A 122 EIGDANIYMRTG-----FHHIPV----EKRELLGQSLRI------------------LLGKQGAMYLIELGTG 167 (245)
T ss_dssp HHCSCEEEEESS-----STTSCG----GGHHHHHHHHHH------------------HHTTTCEEEEEEECTT
T ss_pred ccCccEEEEcch-----hhcCCH----HHHHHHHHHHHH------------------HcCCCCEEEEEeCCcc
Confidence 235999999653 222221 114567777777 9999999998877543
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.36 E-value=6.2e-13 Score=104.95 Aligned_cols=111 Identities=13% Similarity=0.129 Sum_probs=77.6
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
+++.+|||+|||+|.++..+++..+ +.+|+|+|+++.++..+ ....+++++++|+.++... + +.
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p----~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~--~~ 109 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNP----DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDY----F--ED 109 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCT----TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGT----S--CT
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCC----CCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhh----c--CC
Confidence 4678999999999999999999864 47999999999997542 1125799999998764310 1 35
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
++||+|+++.+.+... ..+....-....++..+.+ +|||||.+++.+
T Consensus 110 ~~~D~i~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~------------------~LkpgG~l~~~~ 156 (214)
T 1yzh_A 110 GEIDRLYLNFSDPWPK---KRHEKRRLTYKTFLDTFKR------------------ILPENGEIHFKT 156 (214)
T ss_dssp TCCSEEEEESCCCCCS---GGGGGGSTTSHHHHHHHHH------------------HSCTTCEEEEEE
T ss_pred CCCCEEEEECCCCccc---cchhhhccCCHHHHHHHHH------------------HcCCCcEEEEEe
Confidence 6899999986421110 0000000012457777777 999999999976
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-12 Score=98.96 Aligned_cols=103 Identities=17% Similarity=0.242 Sum_probs=77.7
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCC--CeEEEEeeecCCChhhHhhhC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDA--RVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~--~~~~~~~d~~~~~~~~l~~~~ 108 (186)
.+++.+|||+|||+|.++..+++. +.+|+|+|+++.++..+ .... +++++++|+.+..
T Consensus 50 ~~~~~~vLdiG~G~G~~~~~~~~~------~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-------- 115 (194)
T 1dus_A 50 VDKDDDILDLGCGYGVIGIALADE------VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV-------- 115 (194)
T ss_dssp CCTTCEEEEETCTTSHHHHHHGGG------SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC--------
T ss_pred cCCCCeEEEeCCCCCHHHHHHHHc------CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccc--------
Confidence 567889999999999999999987 37999999999986541 1122 3899999876532
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
..++||+|+++.+.+ +. ......++..+.+ +|||||.+++.....
T Consensus 116 -~~~~~D~v~~~~~~~----~~------~~~~~~~l~~~~~------------------~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 116 -KDRKYNKIITNPPIR----AG------KEVLHRIIEEGKE------------------LLKDNGEIWVVIQTK 160 (194)
T ss_dssp -TTSCEEEEEECCCST----TC------HHHHHHHHHHHHH------------------HEEEEEEEEEEEEST
T ss_pred -ccCCceEEEECCCcc----cc------hhHHHHHHHHHHH------------------HcCCCCEEEEEECCC
Confidence 246899999975421 11 1224567777787 999999999988764
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-13 Score=109.00 Aligned_cols=109 Identities=20% Similarity=0.131 Sum_probs=74.8
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.+++.+|||+|||+|.++..+++.. ..+|+|+|+|+.|++.+ ....++.++++|+.+.... + ++
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~----~--~~ 126 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAP-----IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPT----L--PD 126 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSC-----EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGG----S--CT
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcC-----CCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcc----c--CC
Confidence 4678899999999999999997641 24899999999997542 1235788888887654111 1 35
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
++||+|++|.... ...... ......++.++.+ +|||||+|++..+
T Consensus 127 ~~fD~V~~d~~~~--~~~~~~----~~~~~~~l~~~~r------------------~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 127 GHFDGILYDTYPL--SEETWH----THQFNFIKNHAFR------------------LLKPGGVLTYCNL 171 (236)
T ss_dssp TCEEEEEECCCCC--BGGGTT----THHHHHHHHTHHH------------------HEEEEEEEEECCH
T ss_pred CceEEEEECCccc--chhhhh----hhhHHHHHHHHHH------------------hcCCCeEEEEEec
Confidence 7999999952110 111111 2234466777887 9999999987543
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=4.5e-13 Score=107.18 Aligned_cols=112 Identities=13% Similarity=0.177 Sum_probs=77.7
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
+++.+|||+|||+|.++..+++..+ +.+|+|||+++.++..+ ....+++++++|+.++ +.... +.
T Consensus 33 ~~~~~vLDiGcG~G~~~~~lA~~~p----~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~----l~~~~-~~ 103 (218)
T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKDRP----EQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEV----LHKMI-PD 103 (218)
T ss_dssp SCCCEEEEESCTTCHHHHHHHHHCT----TSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHH----HHHHS-CT
T ss_pred CCCCeEEEEeeeChHHHHHHHHHCC----CCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHH----HHHHc-CC
Confidence 3678999999999999999999864 47999999999997551 2235799999987653 11111 46
Q ss_pred CCccEEEeCCCCCCCCC-cccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 112 KGFSVILSDMCPSVSGI-TTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
++||.|+++.+.+.... +.... -....++..+.+ +|||||.|++.+-
T Consensus 104 ~~~d~v~~~~~~p~~~~~~~~rr----~~~~~~l~~~~r------------------~LkpGG~l~i~td 151 (218)
T 3dxy_A 104 NSLRMVQLFFPDPWHKARHNKRR----IVQVPFAELVKS------------------KLQLGGVFHMATD 151 (218)
T ss_dssp TCEEEEEEESCCCCCSGGGGGGS----SCSHHHHHHHHH------------------HEEEEEEEEEEES
T ss_pred CChheEEEeCCCCccchhhhhhh----hhhHHHHHHHHH------------------HcCCCcEEEEEeC
Confidence 79999999754222111 10000 001247777777 9999999999863
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.34 E-value=5.6e-13 Score=105.80 Aligned_cols=110 Identities=12% Similarity=0.118 Sum_probs=77.4
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.++.+|||+|||+|.++..+++..+ +.+|+|+|+++.++..+ ....+++++++|+.++. ... +.
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p----~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~-----~~~-~~ 106 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNP----DINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT-----DVF-EP 106 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCT----TSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHH-----HHC-CT
T ss_pred CCCceEEEEecCCCHHHHHHHHHCC----CCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHH-----hhc-Cc
Confidence 4678999999999999999999864 58999999999997542 12357999999987532 111 35
Q ss_pred CCccEEEeCCCCCCCC-CcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 112 KGFSVILSDMCPSVSG-ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
++||.|+++.+.+... .+.... -....++..+.+ +|||||.|++.+
T Consensus 107 ~~~d~v~~~~~~p~~~~~~~~~r----l~~~~~l~~~~~------------------~LkpgG~l~~~t 153 (213)
T 2fca_A 107 GEVKRVYLNFSDPWPKKRHEKRR----LTYSHFLKKYEE------------------VMGKGGSIHFKT 153 (213)
T ss_dssp TSCCEEEEESCCCCCSGGGGGGS----TTSHHHHHHHHH------------------HHTTSCEEEEEE
T ss_pred CCcCEEEEECCCCCcCccccccc----cCcHHHHHHHHH------------------HcCCCCEEEEEe
Confidence 6899998865322111 111100 012467777777 999999999986
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=4.5e-13 Score=110.70 Aligned_cols=98 Identities=16% Similarity=0.130 Sum_probs=76.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
++++.+|||+|||+|.++..+++.. ..+|+|+|+++.+++. +....+++++++|+.+...
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~-----~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-------- 189 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYG-----KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-------- 189 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHT-----CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------
T ss_pred CCCCCEEEEecccCCHHHHHHHHhC-----CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc--------
Confidence 5789999999999999999999983 2379999999999754 2333458899999877642
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
.++||+|+++.++.. ..++..+.+ +|||||+|++..+.
T Consensus 190 -~~~fD~Vi~~~p~~~---------------~~~l~~~~~------------------~LkpgG~l~~~~~~ 227 (278)
T 2frn_A 190 -ENIADRILMGYVVRT---------------HEFIPKALS------------------IAKDGAIIHYHNTV 227 (278)
T ss_dssp -CSCEEEEEECCCSSG---------------GGGHHHHHH------------------HEEEEEEEEEEEEE
T ss_pred -cCCccEEEECCchhH---------------HHHHHHHHH------------------HCCCCeEEEEEEee
Confidence 468999999864211 245556666 99999999998775
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.7e-13 Score=104.30 Aligned_cols=101 Identities=29% Similarity=0.345 Sum_probs=75.4
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC-CCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC-DARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~-~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
.++.+|||+|||+|.++..+ + ..+|+|+|+++.++..+.. ..+++++++|+.+++. +.++||+
T Consensus 35 ~~~~~vLdiG~G~G~~~~~l----~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~--------~~~~fD~ 98 (211)
T 2gs9_A 35 PPGESLLEVGAGTGYWLRRL----P----YPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPF--------PGESFDV 98 (211)
T ss_dssp CCCSEEEEETCTTCHHHHHC----C----CSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCS--------CSSCEEE
T ss_pred CCCCeEEEECCCCCHhHHhC----C----CCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCC--------CCCcEEE
Confidence 47889999999999998877 2 2499999999999765221 1578888888876542 3578999
Q ss_pred EEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 117 V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
|++... ..+..+ ...++.++.+ +|||||.+++..+..+
T Consensus 99 v~~~~~----l~~~~~-------~~~~l~~~~~------------------~L~pgG~l~i~~~~~~ 136 (211)
T 2gs9_A 99 VLLFTT----LEFVED-------VERVLLEARR------------------VLRPGGALVVGVLEAL 136 (211)
T ss_dssp EEEESC----TTTCSC-------HHHHHHHHHH------------------HEEEEEEEEEEEECTT
T ss_pred EEEcCh----hhhcCC-------HHHHHHHHHH------------------HcCCCCEEEEEecCCc
Confidence 999542 122222 4567788887 9999999999987654
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.34 E-value=9.7e-13 Score=103.72 Aligned_cols=106 Identities=16% Similarity=0.087 Sum_probs=74.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----------cCCCCCeEEEEeeecCCChhhHhh
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----------LHCDARVQTVSADVINLPSNQVRA 106 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----------~~~~~~~~~~~~d~~~~~~~~l~~ 106 (186)
++++.+|||+|||+|.++..+++..+ +.+|+|+|+++.|+.. .....+++++++|+.+++..
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p----~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~---- 96 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNP----SRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPL---- 96 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCT----TEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSC----
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCC----
Confidence 46788999999999999999999863 5899999999998753 12234799999999876532
Q ss_pred hCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 107 LSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 107 ~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
.+. |.|+..++ +.........-...++.++.+ +|||||++++.+
T Consensus 97 ----~~~-d~v~~~~~------~~~~~~~~~~~~~~~l~~~~~------------------~LkpgG~l~~~~ 140 (218)
T 3mq2_A 97 ----SGV-GELHVLMP------WGSLLRGVLGSSPEMLRGMAA------------------VCRPGASFLVAL 140 (218)
T ss_dssp ----CCE-EEEEEESC------CHHHHHHHHTSSSHHHHHHHH------------------TEEEEEEEEEEE
T ss_pred ----CCC-CEEEEEcc------chhhhhhhhccHHHHHHHHHH------------------HcCCCcEEEEEe
Confidence 334 77664321 111000000011567788887 999999999964
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1e-12 Score=113.60 Aligned_cols=105 Identities=27% Similarity=0.369 Sum_probs=79.8
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
.++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.+ ....+++++++|+.+... ..+
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~------g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~--------~~~ 297 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARM------GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALT--------EEA 297 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHT------TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSC--------TTC
T ss_pred CCCCEEEEEeeeCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccc--------cCC
Confidence 46789999999999999999997 47999999999997652 122348899998876542 246
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
+||+|++|.+.+....... +....++..+.+ +|||||.++|..-
T Consensus 298 ~fD~Ii~npp~~~~~~~~~------~~~~~~l~~~~~------------------~LkpGG~l~iv~n 341 (381)
T 3dmg_A 298 RFDIIVTNPPFHVGGAVIL------DVAQAFVNVAAA------------------RLRPGGVFFLVSN 341 (381)
T ss_dssp CEEEEEECCCCCTTCSSCC------HHHHHHHHHHHH------------------HEEEEEEEEEEEC
T ss_pred CeEEEEECCchhhcccccH------HHHHHHHHHHHH------------------hcCcCcEEEEEEc
Confidence 9999999887554332222 225577888887 9999999999764
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.34 E-value=5e-13 Score=106.56 Aligned_cols=102 Identities=19% Similarity=0.242 Sum_probs=75.9
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
+.+|||+|||+|.++..+++. +.+|+|+|+++.++..+ ....+++++++|+.+.. +..
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~ 131 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMASP------ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR---------PTE 131 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCBT------TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC---------CSS
T ss_pred CCCEEEeCCCCCHHHHHHHhC------CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC---------CCC
Confidence 359999999999999998764 57999999999987541 12356999999988754 245
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
+||+|++... .+.... +....++..+.+ +|||||.|++..+...
T Consensus 132 ~fD~v~~~~~-----l~~~~~----~~~~~~l~~~~~------------------~LkpgG~l~~~~~~~~ 175 (235)
T 3lcc_A 132 LFDLIFDYVF-----FCAIEP----EMRPAWAKSMYE------------------LLKPDGELITLMYPIT 175 (235)
T ss_dssp CEEEEEEESS-----TTTSCG----GGHHHHHHHHHH------------------HEEEEEEEEEEECCCS
T ss_pred CeeEEEEChh-----hhcCCH----HHHHHHHHHHHH------------------HCCCCcEEEEEEeccc
Confidence 8999998543 111111 114567778887 9999999999877543
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.9e-13 Score=108.02 Aligned_cols=103 Identities=17% Similarity=0.236 Sum_probs=75.9
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
+.++.+|||+|||+|..+..+++.+++ +++|+++|+++.++.. .....+++++++|+.+. +..+ .
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----l~~~-~ 132 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPA---DGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQS----LESL-G 132 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCT---TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHTC-C
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHhc-C
Confidence 356789999999999999999998763 5899999999998654 23345799999987542 1111 1
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
..++||+|+++.. ... ....+..+.+ +|||||+|++.-
T Consensus 133 ~~~~fD~V~~d~~--------~~~------~~~~l~~~~~------------------~LkpGG~lv~~~ 170 (248)
T 3tfw_A 133 ECPAFDLIFIDAD--------KPN------NPHYLRWALR------------------YSRPGTLIIGDN 170 (248)
T ss_dssp SCCCCSEEEECSC--------GGG------HHHHHHHHHH------------------TCCTTCEEEEEC
T ss_pred CCCCeEEEEECCc--------hHH------HHHHHHHHHH------------------hcCCCeEEEEeC
Confidence 2358999999652 111 2356777777 999999999863
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-12 Score=113.52 Aligned_cols=110 Identities=14% Similarity=0.148 Sum_probs=77.8
Q ss_pred HHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc--------------CC-CCCeEEE
Q 038391 28 LQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL--------------HC-DARVQTV 92 (186)
Q Consensus 28 ~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~--------------~~-~~~~~~~ 92 (186)
.+++... .++++.+|||||||+|..+..++...+ ..+|+|||+++.++..+ .. ..+++++
T Consensus 163 ~~il~~l-~l~~gd~VLDLGCGtG~l~l~lA~~~g----~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi 237 (438)
T 3uwp_A 163 AQMIDEI-KMTDDDLFVDLGSGVGQVVLQVAAATN----CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLE 237 (438)
T ss_dssp HHHHHHH-CCCTTCEEEEESCTTSHHHHHHHHHCC----CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEE
T ss_pred HHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEE
Confidence 3344444 368899999999999999999998753 24699999999775331 11 2689999
Q ss_pred EeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccC
Q 038391 93 SADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPG 172 (186)
Q Consensus 93 ~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lkpg 172 (186)
++|+.+++... .+ ..||+|+++.. .+..+ ....+.+..+ .||||
T Consensus 238 ~GD~~~lp~~d--~~----~~aDVVf~Nn~-----~F~pd-------l~~aL~Ei~R------------------vLKPG 281 (438)
T 3uwp_A 238 RGDFLSEEWRE--RI----ANTSVIFVNNF-----AFGPE-------VDHQLKERFA------------------NMKEG 281 (438)
T ss_dssp ECCTTSHHHHH--HH----HTCSEEEECCT-----TCCHH-------HHHHHHHHHT------------------TSCTT
T ss_pred ECcccCCcccc--cc----CCccEEEEccc-----ccCch-------HHHHHHHHHH------------------cCCCC
Confidence 99998765321 01 37999999642 12222 3445566677 99999
Q ss_pred cEEEEE
Q 038391 173 GHLVIK 178 (186)
Q Consensus 173 G~lvi~ 178 (186)
|+||+.
T Consensus 282 GrIVss 287 (438)
T 3uwp_A 282 GRIVSS 287 (438)
T ss_dssp CEEEES
T ss_pred cEEEEe
Confidence 999975
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.3e-13 Score=111.50 Aligned_cols=108 Identities=23% Similarity=0.291 Sum_probs=79.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
++++.+|||+|||+|.++..++.... ++.+|+|+|+++.++.. .....+++++++|+.+.+.
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------- 184 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSAC---PGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT-------- 184 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTC---TTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC--------
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcC---CCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc--------
Confidence 57889999999999999999863222 25899999999998654 1223459999999887642
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
.++||+|+++.. ..+..+. .....++..+.+ +|||||+|++..+..
T Consensus 185 -~~~fD~v~~~~~----~~~~~~~----~~~~~~l~~~~~------------------~LkpgG~l~i~~~~~ 230 (305)
T 3ocj_A 185 -REGYDLLTSNGL----NIYEPDD----ARVTELYRRFWQ------------------ALKPGGALVTSFLTP 230 (305)
T ss_dssp -CSCEEEEECCSS----GGGCCCH----HHHHHHHHHHHH------------------HEEEEEEEEEECCCC
T ss_pred -cCCeEEEEECCh----hhhcCCH----HHHHHHHHHHHH------------------hcCCCeEEEEEecCC
Confidence 379999998542 2232232 223456777887 999999999988654
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.4e-12 Score=98.41 Aligned_cols=101 Identities=22% Similarity=0.245 Sum_probs=74.3
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC------CCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH------CDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~------~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.++.+|||+|||+|.++..+++. +.+|+|+|+++.++..+. ...+++++++|+.+.+. .
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---------~ 95 (199)
T 2xvm_A 31 VKPGKTLDLGCGNGRNSLYLAAN------GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF---------D 95 (199)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC---------C
T ss_pred cCCCeEEEEcCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC---------C
Confidence 46779999999999999999987 479999999999876521 22368999998876531 4
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
++||+|++... .+.... +.....+..+.+ +|||||.+++..+
T Consensus 96 ~~~D~v~~~~~-----l~~~~~----~~~~~~l~~~~~------------------~L~~gG~l~~~~~ 137 (199)
T 2xvm_A 96 RQYDFILSTVV-----LMFLEA----KTIPGLIANMQR------------------CTKPGGYNLIVAA 137 (199)
T ss_dssp CCEEEEEEESC-----GGGSCG----GGHHHHHHHHHH------------------TEEEEEEEEEEEE
T ss_pred CCceEEEEcch-----hhhCCH----HHHHHHHHHHHH------------------hcCCCeEEEEEEe
Confidence 68999999642 121111 114567777777 9999999877554
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-13 Score=112.49 Aligned_cols=112 Identities=21% Similarity=0.215 Sum_probs=77.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC----------CCCCeEEEEeeecCCChhhHhhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH----------CDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~----------~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.++..+. ...++.+..+|+..++. .+
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~ 125 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEE------GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK----DV 125 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH----HS
T ss_pred cCCCEEEEecCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcc----cc
Confidence 56789999999999999999987 469999999999976521 12467777887765421 11
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
.+.++||+|++.+. ...+..+.....+....++..+.+ +|||||+|++.+.+
T Consensus 126 -~~~~~fD~V~~~g~---~l~~~~~~~~~~~~~~~~l~~~~~------------------~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 126 -PAGDGFDAVICLGN---SFAHLPDSKGDQSEHRLALKNIAS------------------MVRPGGLLVIDHRN 177 (293)
T ss_dssp -CCTTCEEEEEECTT---CGGGSCCSSSSSHHHHHHHHHHHH------------------TEEEEEEEEEEEEC
T ss_pred -ccCCCeEEEEEcCh---HHhhcCccccCHHHHHHHHHHHHH------------------HcCCCeEEEEEeCC
Confidence 13579999999421 111222200011235577888887 99999999998754
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-11 Score=100.67 Aligned_cols=116 Identities=18% Similarity=0.259 Sum_probs=77.5
Q ss_pred HHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCC------CCCCc-------CCCCCeEEEEee
Q 038391 29 QIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKV------KVPSL-------HCDARVQTVSAD 95 (186)
Q Consensus 29 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~------~i~~~-------~~~~~~~~~~~d 95 (186)
.+..... ++++.+|||+|||+|.++..+++..++ ..+|+|+|+++. ++..+ ....+++++++|
T Consensus 34 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~---~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d 109 (275)
T 3bkx_A 34 AIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGS---SGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNT 109 (275)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCT---TCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSC
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCC---CCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECC
Confidence 3344433 578899999999999999999998743 479999999997 65431 122578998887
Q ss_pred -ecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcE
Q 038391 96 -VINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGH 174 (186)
Q Consensus 96 -~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~ 174 (186)
+....... +.++||+|++... ..+..+. ..+++...+ +++|||+
T Consensus 110 ~~~~~~~~~------~~~~fD~v~~~~~----l~~~~~~-------~~~~~~~~~------------------l~~~gG~ 154 (275)
T 3bkx_A 110 NLSDDLGPI------ADQHFDRVVLAHS----LWYFASA-------NALALLFKN------------------MAAVCDH 154 (275)
T ss_dssp CTTTCCGGG------TTCCCSEEEEESC----GGGSSCH-------HHHHHHHHH------------------HTTTCSE
T ss_pred hhhhccCCC------CCCCEEEEEEccc----hhhCCCH-------HHHHHHHHH------------------HhCCCCE
Confidence 32222111 3578999998542 1222221 234555554 6667999
Q ss_pred EEEEEccCC
Q 038391 175 LVIKLLESQ 183 (186)
Q Consensus 175 lvi~~~~~~ 183 (186)
+++..+..+
T Consensus 155 l~~~~~~~~ 163 (275)
T 3bkx_A 155 VDVAEWSMQ 163 (275)
T ss_dssp EEEEEECSS
T ss_pred EEEEEecCC
Confidence 999876543
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.33 E-value=3e-12 Score=102.30 Aligned_cols=102 Identities=20% Similarity=0.164 Sum_probs=75.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
++++.+|||+|||+|.++..+++.++ .++|+|+|+++.++.. .....++.++.+|+...... +. ...
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~----~~-~~~ 142 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIAD----KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEY----AN-IVE 142 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTT----TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGG----TT-TSC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcC----CcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccc----cc-cCc
Confidence 56789999999999999999999874 3799999999988643 22236899999988752110 01 126
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
+||+|+.+.+ ... ....++..+.+ .|||||++++.
T Consensus 143 ~~D~v~~~~~-------~~~------~~~~~l~~~~~------------------~LkpgG~l~i~ 177 (230)
T 1fbn_A 143 KVDVIYEDVA-------QPN------QAEILIKNAKW------------------FLKKGGYGMIA 177 (230)
T ss_dssp CEEEEEECCC-------STT------HHHHHHHHHHH------------------HEEEEEEEEEE
T ss_pred cEEEEEEecC-------Chh------HHHHHHHHHHH------------------hCCCCcEEEEE
Confidence 8999997532 111 13466777787 99999999997
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-12 Score=101.84 Aligned_cols=99 Identities=14% Similarity=0.216 Sum_probs=74.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
++++.+|||+|||+|.++..+++. + ..+|+|+|+++.++..+ ....+++++++|+.+. .
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~-~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----------~ 122 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKL-G----AKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD----------V 122 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHT-T----CSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT----------C
T ss_pred ccCCCEEEEECCCCCHHHHHHHHC-C----CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc----------C
Confidence 467889999999999999998875 2 36999999999997542 1222388999988653 2
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
.++||+|+++... +....++..+.+ +|||||++++..+..
T Consensus 123 ~~~fD~i~~~~~~--------------~~~~~~l~~~~~------------------~L~~gG~l~~~~~~~ 162 (205)
T 3grz_A 123 DGKFDLIVANILA--------------EILLDLIPQLDS------------------HLNEDGQVIFSGIDY 162 (205)
T ss_dssp CSCEEEEEEESCH--------------HHHHHHGGGSGG------------------GEEEEEEEEEEEEEG
T ss_pred CCCceEEEECCcH--------------HHHHHHHHHHHH------------------hcCCCCEEEEEecCc
Confidence 4689999996531 113466666666 999999999976543
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-11 Score=104.14 Aligned_cols=111 Identities=23% Similarity=0.333 Sum_probs=80.2
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEE
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVI 117 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V 117 (186)
.++.+|||+|||+|.++..++++++. ..+|+|+|+++.++..+ .+++++++|+.+.. ..++||+|
T Consensus 38 ~~~~~vLD~gcGtG~~~~~~~~~~~~---~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~---------~~~~fD~I 102 (421)
T 2ih2_A 38 PRGGRVLEPACAHGPFLRAFREAHGT---AYRFVGVEIDPKALDLP---PWAEGILADFLLWE---------PGEAFDLI 102 (421)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCS---CSEEEEEESCTTTCCCC---TTEEEEESCGGGCC---------CSSCEEEE
T ss_pred CCCCEEEECCCCChHHHHHHHHHhCC---CCeEEEEECCHHHHHhC---CCCcEEeCChhhcC---------ccCCCCEE
Confidence 45679999999999999999998742 47999999999998765 57889999987653 24689999
Q ss_pred EeCCCCCCCCCcc-----cchHHHH-------------HHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 118 LSDMCPSVSGITT-----KDAALSV-------------ELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 118 ~~d~~~~~~~~~~-----~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
++|++........ ....... +....++..+.+ +|+|||++++.+
T Consensus 103 i~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~------------------~Lk~~G~~~~i~ 164 (421)
T 2ih2_A 103 LGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVR------------------LLKPGGVLVFVV 164 (421)
T ss_dssp EECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHH------------------HEEEEEEEEEEE
T ss_pred EECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHH------------------HhCCCCEEEEEE
Confidence 9997643322200 1111111 122356777777 999999999887
Q ss_pred cc
Q 038391 180 LE 181 (186)
Q Consensus 180 ~~ 181 (186)
-.
T Consensus 165 p~ 166 (421)
T 2ih2_A 165 PA 166 (421)
T ss_dssp EG
T ss_pred Ch
Confidence 54
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-12 Score=106.40 Aligned_cols=102 Identities=25% Similarity=0.256 Sum_probs=73.6
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEE
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVI 117 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V 117 (186)
+++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.+.......++++|+.+++. +.++||+|
T Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~--------~~~~fD~v 118 (260)
T 2avn_A 53 KNPCRVLDLGGGTGKWSLFLQER------GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPF--------PSGAFEAV 118 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT------TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCS--------CTTCEEEE
T ss_pred CCCCeEEEeCCCcCHHHHHHHHc------CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCC--------CCCCEEEE
Confidence 47889999999999999999986 47999999999997652211111377888776542 35789999
Q ss_pred EeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 118 LSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 118 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
++... ..+.... ...++.++.+ +|||||.+++.+..
T Consensus 119 ~~~~~----~~~~~~~------~~~~l~~~~~------------------~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 119 LALGD----VLSYVEN------KDKAFSEIRR------------------VLVPDGLLIATVDN 154 (260)
T ss_dssp EECSS----HHHHCSC------HHHHHHHHHH------------------HEEEEEEEEEEEEB
T ss_pred EEcch----hhhcccc------HHHHHHHHHH------------------HcCCCeEEEEEeCC
Confidence 98321 1121111 4567788887 99999999998764
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.6e-12 Score=106.55 Aligned_cols=101 Identities=20% Similarity=0.175 Sum_probs=75.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
++.+|||+|||+|.++..+++. +.+|+|+|+++.++..+ ....+++++++|+.+... .++
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~------g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~---------~~~ 184 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLL------GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI---------QEN 184 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC---------CSC
T ss_pred CCCcEEEECCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc---------cCC
Confidence 6789999999999999999997 47999999999997641 112278999999876542 478
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
||+|+++.. .+.... .....++..+.+ +|||||.+++....
T Consensus 185 fD~i~~~~~-----~~~~~~----~~~~~~l~~~~~------------------~LkpgG~l~i~~~~ 225 (286)
T 3m70_A 185 YDFIVSTVV-----FMFLNR----ERVPSIIKNMKE------------------HTNVGGYNLIVAAM 225 (286)
T ss_dssp EEEEEECSS-----GGGSCG----GGHHHHHHHHHH------------------TEEEEEEEEEEEEB
T ss_pred ccEEEEccc-----hhhCCH----HHHHHHHHHHHH------------------hcCCCcEEEEEEec
Confidence 999999653 221111 124467777777 99999998776543
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.32 E-value=9.2e-12 Score=107.13 Aligned_cols=103 Identities=19% Similarity=0.225 Sum_probs=74.6
Q ss_pred CCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhh
Q 038391 35 KLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
..+.++.+|||+|||+|.++..+++. + ..+|+|+|++ .|+.. .....+++++++|+.+...
T Consensus 59 ~~~~~~~~VLDlGcGtG~ls~~la~~-g----~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------ 126 (376)
T 3r0q_C 59 KHHFEGKTVLDVGTGSGILAIWSAQA-G----ARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISL------ 126 (376)
T ss_dssp TTTTTTCEEEEESCTTTHHHHHHHHT-T----CSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCC------
T ss_pred cccCCCCEEEEeccCcCHHHHHHHhc-C----CCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCc------
Confidence 44577899999999999999999987 2 3599999999 88644 2334569999999877642
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
.++||+|+++...... .+.. ....++....+ +|||||.|++.
T Consensus 127 ---~~~~D~Iv~~~~~~~l-~~e~-------~~~~~l~~~~~------------------~LkpgG~li~~ 168 (376)
T 3r0q_C 127 ---PEKVDVIISEWMGYFL-LRES-------MFDSVISARDR------------------WLKPTGVMYPS 168 (376)
T ss_dssp ---SSCEEEEEECCCBTTB-TTTC-------THHHHHHHHHH------------------HEEEEEEEESS
T ss_pred ---CCcceEEEEcChhhcc-cchH-------HHHHHHHHHHh------------------hCCCCeEEEEe
Confidence 2689999996521111 1111 14456777767 99999999753
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.32 E-value=6.2e-13 Score=104.57 Aligned_cols=103 Identities=16% Similarity=0.123 Sum_probs=72.4
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCC--CCeEEEEeeecCCChhhHhhhCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCD--ARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~--~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
++.+|||+|||+|.++..++... ..+|+|+|+++.+++.+ ... .+++++++|+.+.... + .
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~----~--~ 121 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQ-----AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQ----P--Q 121 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-----CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTS----C--C
T ss_pred CCCeEEEcCCccCHHHHHHHHcc-----CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHh----h--c
Confidence 57899999999999999887762 35899999999997642 111 5789999987643211 0 2
Q ss_pred CCC-ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHH--cCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 111 QKG-FSVILSDMCPSVSGITTKDAALSVELGMRAVDLA--LGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 111 ~~~-~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
.++ ||+|+++.+.. ... ....+... .+ +|||||.+++.....
T Consensus 122 ~~~~fD~I~~~~~~~-----~~~-------~~~~l~~~~~~~------------------~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 122 NQPHFDVVFLDPPFH-----FNL-------AEQAISLLCENN------------------WLKPNALIYVETEKD 166 (201)
T ss_dssp SSCCEEEEEECCCSS-----SCH-------HHHHHHHHHHTT------------------CEEEEEEEEEEEESS
T ss_pred cCCCCCEEEECCCCC-----Ccc-------HHHHHHHHHhcC------------------ccCCCcEEEEEECCC
Confidence 467 99999986521 111 22344444 55 899999999987654
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-12 Score=102.68 Aligned_cols=103 Identities=19% Similarity=0.245 Sum_probs=74.9
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-----CCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-----CDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-----~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
++++.+|||+|||+|.++..+++. .+|+|+|+++.++..+. ...+++++++|+.+.+. .
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~-------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~---------~ 94 (243)
T 3d2l_A 31 VEPGKRIADIGCGTGTATLLLADH-------YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELEL---------P 94 (243)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT-------SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCC---------S
T ss_pred cCCCCeEEEecCCCCHHHHHHhhC-------CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCC---------C
Confidence 467789999999999999988875 58999999999976521 22568899998876532 3
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
++||+|++... ...+..+ .......+..+.+ +|||||++++.+.
T Consensus 95 ~~fD~v~~~~~---~~~~~~~----~~~~~~~l~~~~~------------------~L~pgG~l~~~~~ 138 (243)
T 3d2l_A 95 EPVDAITILCD---SLNYLQT----EADVKQTFDSAAR------------------LLTDGGKLLFDVH 138 (243)
T ss_dssp SCEEEEEECTT---GGGGCCS----HHHHHHHHHHHHH------------------HEEEEEEEEEEEE
T ss_pred CCcCEEEEeCC---chhhcCC----HHHHHHHHHHHHH------------------hcCCCeEEEEEcC
Confidence 68999998431 1112111 2235567777777 9999999998664
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.1e-13 Score=111.07 Aligned_cols=112 Identities=13% Similarity=0.117 Sum_probs=73.9
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC-----CC-------CeEEEEeeecCCCh-hhH
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC-----DA-------RVQTVSADVINLPS-NQV 104 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~-----~~-------~~~~~~~d~~~~~~-~~l 104 (186)
+++.+|||+|||+|..+..++.. ++.+|+|+|+|+.||+.++. .. ++++.+.|+..... ..+
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~-----~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l 121 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYG-----EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSV 121 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHT-----TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHH
T ss_pred CCCCeEEEEecCCcHhHHHHHhc-----CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhh
Confidence 35789999999999877766654 14699999999999865221 11 25677777743321 122
Q ss_pred hhhCCCCCCccEEEeCCCCCCCCCcc-cchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 105 RALSPKQKGFSVILSDMCPSVSGITT-KDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 105 ~~~~~~~~~~D~V~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
... .+.++||+|+|... .|. .+.. + ...++.++.+ +|||||+|++.+.+.
T Consensus 122 ~~~-~~~~~FD~V~~~~~-----lhy~~~~~---~-~~~~l~~~~r------------------~LkpGG~~i~~~~~~ 172 (302)
T 2vdw_A 122 REV-FYFGKFNIIDWQFA-----IHYSFHPR---H-YATVMNNLSE------------------LTASGGKVLITTMDG 172 (302)
T ss_dssp HTT-CCSSCEEEEEEESC-----GGGTCSTT---T-HHHHHHHHHH------------------HEEEEEEEEEEEECH
T ss_pred hcc-ccCCCeeEEEECch-----HHHhCCHH---H-HHHHHHHHHH------------------HcCCCCEEEEEeCCH
Confidence 111 13579999998542 221 1111 1 3578888888 999999999988753
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=6.2e-12 Score=103.17 Aligned_cols=111 Identities=15% Similarity=0.162 Sum_probs=79.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC------CCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH------CDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~------~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
+++.+|||+|||+|.++..+++.++ +.+|+|+|+++.++..+. ...+++++++|+.+.. +.
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~----~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~---------~~ 174 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERP----DCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL---------AG 174 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCT----TSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG---------TT
T ss_pred cCCCEEEEecCCccHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhc---------cc
Confidence 5678999999999999999998864 479999999999975421 2236889988875431 24
Q ss_pred CCccEEEeCCCCCCCCC---------ccc-----chHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 112 KGFSVILSDMCPSVSGI---------TTK-----DAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~---------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
++||+|++++++..... +.+ ............+..+.+ .|||||++++
T Consensus 175 ~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~------------------~LkpgG~l~~ 236 (276)
T 2b3t_A 175 QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRN------------------ALVSGGFLLL 236 (276)
T ss_dssp CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGG------------------GEEEEEEEEE
T ss_pred CCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHH------------------hcCCCCEEEE
Confidence 68999999876432211 000 001112345677888887 9999999998
Q ss_pred EE
Q 038391 178 KL 179 (186)
Q Consensus 178 ~~ 179 (186)
..
T Consensus 237 ~~ 238 (276)
T 2b3t_A 237 EH 238 (276)
T ss_dssp EC
T ss_pred EE
Confidence 74
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.31 E-value=4e-12 Score=109.59 Aligned_cols=107 Identities=19% Similarity=0.131 Sum_probs=76.4
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CC--CCCeEEEEeeecCCChhhHhhh
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HC--DARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~--~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
..++.+|||+|||+|.++..+++..+ +.+|+|+|+++.+++.+ .. ..+++++.+|+.+..
T Consensus 220 ~~~~~~VLDlGcG~G~~s~~la~~~p----~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~------- 288 (375)
T 4dcm_A 220 ENLEGEIVDLGCGNGVIGLTLLDKNP----QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV------- 288 (375)
T ss_dssp CSCCSEEEEETCTTCHHHHHHHHHCT----TCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTC-------
T ss_pred ccCCCeEEEEeCcchHHHHHHHHHCC----CCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccC-------
Confidence 34568999999999999999999863 58999999999997552 11 125788889886532
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
+.++||+|++|++.+....... .....++..+.+ +|||||.++|..-
T Consensus 289 --~~~~fD~Ii~nppfh~~~~~~~------~~~~~~l~~~~~------------------~LkpgG~l~iv~n 335 (375)
T 4dcm_A 289 --EPFRFNAVLCNPPFHQQHALTD------NVAWEMFHHARR------------------CLKINGELYIVAN 335 (375)
T ss_dssp --CTTCEEEEEECCCC-------C------CHHHHHHHHHHH------------------HEEEEEEEEEEEE
T ss_pred --CCCCeeEEEECCCcccCcccCH------HHHHHHHHHHHH------------------hCCCCcEEEEEEE
Confidence 3568999999876432211111 123357778887 9999999999653
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.7e-13 Score=108.06 Aligned_cols=91 Identities=15% Similarity=0.192 Sum_probs=70.0
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-CCCCeEEEEeeecC-CChhhHhhhCCC-CCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-CDARVQTVSADVIN-LPSNQVRALSPK-QKG 113 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-~~~~~~~~~~d~~~-~~~~~l~~~~~~-~~~ 113 (186)
++++.+|||+|||+|.++..+++. +.+|+|+|+++.++..+. ...+++++++|+.+ ++. + .++
T Consensus 46 ~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~--------~~~~~ 111 (226)
T 3m33_A 46 LTPQTRVLEAGCGHGPDAARFGPQ------AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPA--------GLGAP 111 (226)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGG------SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCT--------TCCCC
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCC--------cCCCC
Confidence 367899999999999999999987 479999999999976522 24579999999853 321 2 579
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEE
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV 176 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lv 176 (186)
||+|+++. . ...++..+.+ +|||||+|+
T Consensus 112 fD~v~~~~--------~---------~~~~l~~~~~------------------~LkpgG~l~ 139 (226)
T 3m33_A 112 FGLIVSRR--------G---------PTSVILRLPE------------------LAAPDAHFL 139 (226)
T ss_dssp EEEEEEES--------C---------CSGGGGGHHH------------------HEEEEEEEE
T ss_pred EEEEEeCC--------C---------HHHHHHHHHH------------------HcCCCcEEE
Confidence 99999952 1 1134555565 999999998
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-12 Score=103.11 Aligned_cols=102 Identities=17% Similarity=0.256 Sum_probs=75.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
.++.+|||+|||+|.++..+++.+++ +++|+++|+++.++.. .....+++++++|+.+.. ..+...
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~ 129 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSS---GGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSL----QQIENE 129 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCS---SCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHH----HHHHHT
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH----HHHHhc
Confidence 56789999999999999999998763 5799999999988654 233456999999886432 111101
Q ss_pred -CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 111 -QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 111 -~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
.++||+|+++..+ . .....+..+.+ +|||||++++.
T Consensus 130 ~~~~fD~v~~d~~~--------~------~~~~~l~~~~~------------------~L~pgG~lv~~ 166 (223)
T 3duw_A 130 KYEPFDFIFIDADK--------Q------NNPAYFEWALK------------------LSRPGTVIIGD 166 (223)
T ss_dssp TCCCCSEEEECSCG--------G------GHHHHHHHHHH------------------TCCTTCEEEEE
T ss_pred CCCCcCEEEEcCCc--------H------HHHHHHHHHHH------------------hcCCCcEEEEe
Confidence 2579999997531 1 13356777777 99999999986
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.4e-12 Score=107.17 Aligned_cols=113 Identities=22% Similarity=0.174 Sum_probs=78.7
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-------------CCCCeEEEEeeecCCChhhH
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-------------CDARVQTVSADVINLPSNQV 104 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-------------~~~~~~~~~~d~~~~~~~~l 104 (186)
+++.+|||+|||+|.++..+++. +..+|+|+|+++.++..+. ...+++++++|+...+..
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-- 105 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG-----RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLI-- 105 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT-----TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCST--
T ss_pred CCCCEEEEECCCCcHHHHHHHhc-----CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchh--
Confidence 46789999999999999999985 2479999999999875421 223689999998775410
Q ss_pred hhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 105 RALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 105 ~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
..+..+.++||+|++... .+.. .........++..+.+ +|||||.|++.++..
T Consensus 106 ~~~~~~~~~fD~V~~~~~-----l~~~--~~~~~~~~~~l~~~~~------------------~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 106 DKFRDPQMCFDICSCQFV-----CHYS--FESYEQADMMLRNACE------------------RLSPGGYFIGTTPNS 158 (313)
T ss_dssp TTCSSTTCCEEEEEEETC-----GGGG--GGSHHHHHHHHHHHHT------------------TEEEEEEEEEEEECH
T ss_pred hhcccCCCCEEEEEEecc-----hhhc--cCCHHHHHHHHHHHHH------------------HhCCCcEEEEecCCh
Confidence 001112358999999542 2221 0112335578888888 999999999998754
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.30 E-value=7.1e-13 Score=100.41 Aligned_cols=101 Identities=16% Similarity=0.202 Sum_probs=76.5
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-CCCCeEEEEeeecCCChhhHhhhCCCCCCcc
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-CDARVQTVSADVINLPSNQVRALSPKQKGFS 115 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D 115 (186)
++++.+|||+|||+|.++..+++.. .+|+|+|+++.++.... ...++++.++| ... +.++||
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~------~~v~~vD~s~~~~~~a~~~~~~v~~~~~d-~~~----------~~~~~D 77 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFA------TKLYCIDINVIALKEVKEKFDSVITLSDP-KEI----------PDNSVD 77 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTE------EEEEEECSCHHHHHHHHHHCTTSEEESSG-GGS----------CTTCEE
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhc------CeEEEEeCCHHHHHHHHHhCCCcEEEeCC-CCC----------CCCceE
Confidence 4678899999999999999999973 59999999999876522 14578888887 111 357999
Q ss_pred EEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 116 VILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 116 ~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
+|++.... .+..+ ...++..+.+ .|||||++++..+..+
T Consensus 78 ~v~~~~~l----~~~~~-------~~~~l~~~~~------------------~L~pgG~l~~~~~~~~ 116 (170)
T 3i9f_A 78 FILFANSF----HDMDD-------KQHVISEVKR------------------ILKDDGRVIIIDWRKE 116 (170)
T ss_dssp EEEEESCS----TTCSC-------HHHHHHHHHH------------------HEEEEEEEEEEEECSS
T ss_pred EEEEccch----hcccC-------HHHHHHHHHH------------------hcCCCCEEEEEEcCcc
Confidence 99996431 22222 4567777887 9999999999987654
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.1e-12 Score=102.42 Aligned_cols=102 Identities=25% Similarity=0.365 Sum_probs=77.9
Q ss_pred cCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhh
Q 038391 34 YKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRA 106 (186)
Q Consensus 34 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~ 106 (186)
...++++.+|||+|||+|.++..+++.+++ +.+|+++|+++.+++.+ ....+++++++|+.+..
T Consensus 88 ~~~~~~~~~vldiG~G~G~~~~~l~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------ 158 (255)
T 3mb5_A 88 YAGISPGDFIVEAGVGSGALTLFLANIVGP---EGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGI------ 158 (255)
T ss_dssp HTTCCTTCEEEEECCTTSHHHHHHHHHHCT---TSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCC------
T ss_pred hhCCCCCCEEEEecCCchHHHHHHHHHhCC---CeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhcc------
Confidence 334688999999999999999999999654 58999999999986542 22345999999887542
Q ss_pred hCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 107 LSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 107 ~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+.++||+|+++.+. ....+..+.+ .|||||++++....
T Consensus 159 ---~~~~~D~v~~~~~~----------------~~~~l~~~~~------------------~L~~gG~l~~~~~~ 196 (255)
T 3mb5_A 159 ---EEENVDHVILDLPQ----------------PERVVEHAAK------------------ALKPGGFFVAYTPC 196 (255)
T ss_dssp ---CCCSEEEEEECSSC----------------GGGGHHHHHH------------------HEEEEEEEEEEESS
T ss_pred ---CCCCcCEEEECCCC----------------HHHHHHHHHH------------------HcCCCCEEEEEECC
Confidence 35689999997531 1235666666 99999999987643
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-12 Score=105.18 Aligned_cols=104 Identities=17% Similarity=0.117 Sum_probs=75.9
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC--C----CCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH--C----DARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~--~----~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
+++.+|||+|||+|.++..+++.. ..+|+|+|+++.++..+. . ..+++++++|+.+... +.
T Consensus 78 ~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~~ 144 (241)
T 2ex4_A 78 TGTSCALDCGAGIGRITKRLLLPL-----FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP--------EP 144 (241)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTT-----CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC--------CS
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc-----CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCC--------CC
Confidence 358899999999999999988874 369999999999975421 1 2357888888776542 24
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
++||+|+++.. ..+..+ .....++..+.+ +|||||+|++..+.
T Consensus 145 ~~fD~v~~~~~----l~~~~~-----~~~~~~l~~~~~------------------~LkpgG~l~i~~~~ 187 (241)
T 2ex4_A 145 DSYDVIWIQWV----IGHLTD-----QHLAEFLRRCKG------------------SLRPNGIIVIKDNM 187 (241)
T ss_dssp SCEEEEEEESC----GGGSCH-----HHHHHHHHHHHH------------------HEEEEEEEEEEEEE
T ss_pred CCEEEEEEcch----hhhCCH-----HHHHHHHHHHHH------------------hcCCCeEEEEEEcc
Confidence 68999999642 112221 123467777787 99999999997654
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.5e-12 Score=97.69 Aligned_cols=66 Identities=23% Similarity=0.220 Sum_probs=55.5
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEE
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVI 117 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V 117 (186)
.++.+|||+|||+|.++..+++. + +|+|+|+++.|+.. ..+++++++|+.+.. +.++||+|
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~------~-~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~---------~~~~fD~i 82 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKR------N-TVVSTDLNIRALES---HRGGNLVRADLLCSI---------NQESVDVV 82 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTT------S-EEEEEESCHHHHHT---CSSSCEEECSTTTTB---------CGGGCSEE
T ss_pred CCCCeEEEeccCccHHHHHHHhc------C-cEEEEECCHHHHhc---ccCCeEEECChhhhc---------ccCCCCEE
Confidence 45779999999999999999987 4 99999999999876 457899999987632 23689999
Q ss_pred EeCCC
Q 038391 118 LSDMC 122 (186)
Q Consensus 118 ~~d~~ 122 (186)
+++++
T Consensus 83 ~~n~~ 87 (170)
T 3q87_B 83 VFNPP 87 (170)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 99865
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=8.7e-13 Score=104.55 Aligned_cols=100 Identities=25% Similarity=0.337 Sum_probs=74.6
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC----C-------CCCeEEEEeeecCCChhhHh
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH----C-------DARVQTVSADVINLPSNQVR 105 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~----~-------~~~~~~~~~d~~~~~~~~l~ 105 (186)
++++.+|||+|||+|.++..+++.+++ .++|+++|+++.++.... . ..+++++++|+......
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--- 148 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGC---TGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE--- 148 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCT---TCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG---
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCccc---
Confidence 678899999999999999999998753 469999999999875421 0 34789999988754322
Q ss_pred hhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 106 ALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 106 ~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
.++||+|+++..+. + .+..+.+ .|||||+|++.+-..
T Consensus 149 -----~~~fD~i~~~~~~~----~-------------~~~~~~~------------------~LkpgG~lv~~~~~~ 185 (226)
T 1i1n_A 149 -----EAPYDAIHVGAAAP----V-------------VPQALID------------------QLKPGGRLILPVGPA 185 (226)
T ss_dssp -----GCCEEEEEECSBBS----S-------------CCHHHHH------------------TEEEEEEEEEEESCT
T ss_pred -----CCCcCEEEECCchH----H-------------HHHHHHH------------------hcCCCcEEEEEEecC
Confidence 45899999965421 1 1123445 899999999987643
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.29 E-value=6.6e-12 Score=97.88 Aligned_cols=95 Identities=16% Similarity=0.131 Sum_probs=73.8
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
++.+|||+|||+|.++..++..++ +.+|+|+|+++.++..+ ....+++++++|+.+.. +.+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---------~~~ 131 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRP----EAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP---------SEP 131 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCT----TSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC---------CCS
T ss_pred CCCeEEEECCCCCHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC---------ccC
Confidence 478999999999999999999864 47999999999986541 12235889999887653 246
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
+||+|+++. ... ...++..+.+ +|+|||.+++..
T Consensus 132 ~~D~i~~~~------~~~---------~~~~l~~~~~------------------~L~~gG~l~~~~ 165 (207)
T 1jsx_A 132 PFDGVISRA------FAS---------LNDMVSWCHH------------------LPGEQGRFYALK 165 (207)
T ss_dssp CEEEEECSC------SSS---------HHHHHHHHTT------------------SEEEEEEEEEEE
T ss_pred CcCEEEEec------cCC---------HHHHHHHHHH------------------hcCCCcEEEEEe
Confidence 899999843 111 3477888888 999999999874
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.3e-12 Score=101.89 Aligned_cols=107 Identities=15% Similarity=0.016 Sum_probs=71.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCC-CCc---------CCCCCeEEEEeeecCCChhhHhhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKV-PSL---------HCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i-~~~---------~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
+++.+|||+|||+|.++..+++..+ +.+|+|+|+|+..+ +.+ ....++.++++|+.+++...
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~----~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~---- 94 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQ----NTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFEL---- 94 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCT----TEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGG----
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCC----CCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhc----
Confidence 5788999999999999999997643 57999999995443 211 12347899999988774321
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
.+.+|.|.++++ +.............++.++.+ +|||||.|++..
T Consensus 95 ---~d~v~~i~~~~~------~~~~~~~~~~~~~~~l~~~~r------------------~LkpGG~l~i~~ 139 (225)
T 3p2e_A 95 ---KNIADSISILFP------WGTLLEYVIKPNRDILSNVAD------------------LAKKEAHFEFVT 139 (225)
T ss_dssp ---TTCEEEEEEESC------CHHHHHHHHTTCHHHHHHHHT------------------TEEEEEEEEEEE
T ss_pred ---cCeEEEEEEeCC------CcHHhhhhhcchHHHHHHHHH------------------hcCCCcEEEEEE
Confidence 246777776542 100000000011356788888 999999999933
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.28 E-value=2e-12 Score=104.00 Aligned_cols=99 Identities=11% Similarity=0.081 Sum_probs=73.7
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
+++.+|||+|||+|.++..++...+ +.+|+|+|+++.++..+ ....+++++++|+.++... ....
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~~ 139 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFP----HLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR-----KDVR 139 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCT----TCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC-----TTTT
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCC----CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhccc-----cccc
Confidence 5688999999999999999998643 57999999999886542 1223699999987654310 0014
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
++||+|+++. . .+ ...++..+.+ +|||||++++.
T Consensus 140 ~~fD~V~~~~------~--~~-------~~~~l~~~~~------------------~LkpgG~l~~~ 173 (240)
T 1xdz_A 140 ESYDIVTARA------V--AR-------LSVLSELCLP------------------LVKKNGLFVAL 173 (240)
T ss_dssp TCEEEEEEEC------C--SC-------HHHHHHHHGG------------------GEEEEEEEEEE
T ss_pred CCccEEEEec------c--CC-------HHHHHHHHHH------------------hcCCCCEEEEE
Confidence 6899999943 1 11 4578888887 99999999875
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.9e-12 Score=98.87 Aligned_cols=101 Identities=21% Similarity=0.217 Sum_probs=73.9
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC------CCCCeEEEEeeecCCChhhHhhhCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH------CDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~------~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.++++.+|||+|||+|.++..+++..++ ..+|+++|+++.++..+. ...++++.++|+.....
T Consensus 74 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-------- 142 (215)
T 2yxe_A 74 DLKPGMKVLEIGTGCGYHAAVTAEIVGE---DGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE-------- 142 (215)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCT---TSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG--------
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--------
Confidence 4678899999999999999999998743 379999999999875421 22468888888754321
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
..++||+|+++.. .+... ..+.+ +|||||++++.+-..
T Consensus 143 ~~~~fD~v~~~~~-----~~~~~------------~~~~~------------------~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 143 PLAPYDRIYTTAA-----GPKIP------------EPLIR------------------QLKDGGKLLMPVGRY 180 (215)
T ss_dssp GGCCEEEEEESSB-----BSSCC------------HHHHH------------------TEEEEEEEEEEESSS
T ss_pred CCCCeeEEEECCc-----hHHHH------------HHHHH------------------HcCCCcEEEEEECCC
Confidence 1358999999643 11111 23455 899999999987654
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-12 Score=98.12 Aligned_cols=107 Identities=16% Similarity=0.078 Sum_probs=73.5
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC-----CCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC-----DARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~-----~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
+++.+|||+|||+|.++..+++. +.+|+|+|+++.++..++. ..+++++++|+.+... .+...++
T Consensus 40 ~~~~~vLD~GcG~G~~~~~l~~~------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~~ 109 (171)
T 1ws6_A 40 PRRGRFLDPFAGSGAVGLEAASE------GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLP----EAKAQGE 109 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHT------TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHH----HHHHTTC
T ss_pred cCCCeEEEeCCCcCHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHH----hhhccCC
Confidence 47889999999999999999987 3569999999999754211 1168888888765311 1111134
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHH--cCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCCC
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLA--LGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDA 185 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~ 185 (186)
+||+|+++.+.. .... ..+... .+ +|||||.+++.+...+.+
T Consensus 110 ~~D~i~~~~~~~----~~~~---------~~~~~~~~~~------------------~L~~gG~~~~~~~~~~~~ 153 (171)
T 1ws6_A 110 RFTVAFMAPPYA----MDLA---------ALFGELLASG------------------LVEAGGLYVLQHPKDLYL 153 (171)
T ss_dssp CEEEEEECCCTT----SCTT---------HHHHHHHHHT------------------CEEEEEEEEEEEETTSCC
T ss_pred ceEEEEECCCCc----hhHH---------HHHHHHHhhc------------------ccCCCcEEEEEeCCccCC
Confidence 899999987532 1111 122222 36 999999999998776554
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.7e-12 Score=104.63 Aligned_cols=99 Identities=17% Similarity=0.095 Sum_probs=73.7
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
+++.+|||+|||+|..+..++..++ +.+|+++|+++.++..+ ....+++++++|+.+..... ...
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~-----~~~ 149 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRP----ELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREA-----GHR 149 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCT----TCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTST-----TTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhccc-----ccC
Confidence 5678999999999999999999864 58999999999997541 12246999999876543210 014
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
++||+|+++. ... ....+..+.+ +|||||+|++-
T Consensus 150 ~~fD~I~s~a------~~~---------~~~ll~~~~~------------------~LkpgG~l~~~ 183 (249)
T 3g89_A 150 EAYARAVARA------VAP---------LCVLSELLLP------------------FLEVGGAAVAM 183 (249)
T ss_dssp TCEEEEEEES------SCC---------HHHHHHHHGG------------------GEEEEEEEEEE
T ss_pred CCceEEEECC------cCC---------HHHHHHHHHH------------------HcCCCeEEEEE
Confidence 6899999953 111 3467777887 99999998863
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-12 Score=105.98 Aligned_cols=112 Identities=10% Similarity=0.074 Sum_probs=75.2
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------------CCCCCeEEEEeeecCCChhhHh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------------HCDARVQTVSADVINLPSNQVR 105 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------------~~~~~~~~~~~d~~~~~~~~l~ 105 (186)
.++.+|||+|||+|.++..+++..+ +..|+|+|+++.|+..+ ....+++++++|+.+. +.
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p----~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~----l~ 116 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFP----DTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKH----LP 116 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGST----TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTC----HH
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCC----CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHh----hh
Confidence 5567999999999999999998864 47999999999987531 2245799999998652 11
Q ss_pred hhCCCCCCccEEEeCCCCCCCC-CcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 106 ALSPKQKGFSVILSDMCPSVSG-ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 106 ~~~~~~~~~D~V~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
... +.++||.|++..+.+... .+... .-....++..+.+ +|||||.|++.+-
T Consensus 117 ~~~-~~~~~D~v~~~~~dp~~k~~h~kr----r~~~~~~l~~~~~------------------~LkpGG~l~~~td 169 (235)
T 3ckk_A 117 NFF-YKGQLTKMFFLFPDPHFKRTKHKW----RIISPTLLAEYAY------------------VLRVGGLVYTITD 169 (235)
T ss_dssp HHC-CTTCEEEEEEESCC---------------CCCHHHHHHHHH------------------HEEEEEEEEEEES
T ss_pred hhC-CCcCeeEEEEeCCCchhhhhhhhh----hhhhHHHHHHHHH------------------HCCCCCEEEEEeC
Confidence 111 357899998865311100 00000 0001357777777 9999999998764
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-12 Score=103.83 Aligned_cols=103 Identities=16% Similarity=0.151 Sum_probs=75.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
.++.+|||+|||+|..+..+++.++. +++|+++|+++.++.. .....+++++++|+.+.. ..+...
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~ 135 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPK---DGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTL----AELIHA 135 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHH----HHHHTT
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCC---CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHH----HHhhhc
Confidence 46789999999999999999998763 5899999999998654 233356999999875432 111101
Q ss_pred --CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 111 --QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 --~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
.++||+|+++.. .. .....+..+.+ +|||||+|++.-
T Consensus 136 ~~~~~fD~v~~~~~--------~~------~~~~~l~~~~~------------------~L~pgG~lv~~~ 174 (225)
T 3tr6_A 136 GQAWQYDLIYIDAD--------KA------NTDLYYEESLK------------------LLREGGLIAVDN 174 (225)
T ss_dssp TCTTCEEEEEECSC--------GG------GHHHHHHHHHH------------------HEEEEEEEEEEC
T ss_pred cCCCCccEEEECCC--------HH------HHHHHHHHHHH------------------hcCCCcEEEEeC
Confidence 168999998652 11 13356777777 999999999853
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.9e-12 Score=100.73 Aligned_cols=103 Identities=13% Similarity=0.087 Sum_probs=71.6
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC------CCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH------CDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~------~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
++.+|||+|||+|.++..+++.. ..+|+|+|+++.+++.++ ...+++++++|+.+... ...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~-----~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~-------~~~~ 121 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRY-----AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA-------QKGT 121 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-----CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS-------SCCC
T ss_pred CCCeEEEeCCCcCHHHHHHHhcC-----CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHh-------hcCC
Confidence 57899999999999999888762 259999999999976421 11478999888754211 1246
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHH--cCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLA--LGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
+||+|+++++.. ... ....+... .+ +|||||.+++.....+
T Consensus 122 ~fD~V~~~~p~~-----~~~-------~~~~l~~l~~~~------------------~L~pgG~l~i~~~~~~ 164 (202)
T 2fpo_A 122 PHNIVFVDPPFR-----RGL-------LEETINLLEDNG------------------WLADEALIYVESEVEN 164 (202)
T ss_dssp CEEEEEECCSSS-----TTT-------HHHHHHHHHHTT------------------CEEEEEEEEEEEEGGG
T ss_pred CCCEEEECCCCC-----CCc-------HHHHHHHHHhcC------------------ccCCCcEEEEEECCCc
Confidence 899999986522 111 12233333 34 7999999999876544
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3.9e-12 Score=105.05 Aligned_cols=113 Identities=11% Similarity=0.077 Sum_probs=68.8
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeE--EEEeCCCCCCCCcC-------CCCCeEEEEeeecCCChhhHh-hh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSV--VGIDVKKVKVPSLH-------CDARVQTVSADVINLPSNQVR-AL 107 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v--~gvDis~~~i~~~~-------~~~~~~~~~~d~~~~~~~~l~-~~ 107 (186)
+++.+|||+|||+|.++..++..+...+++.+| +|+|+|+.|+..+. ...++++...+.. ...+. .+
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~ 127 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKET---SSEYQSRM 127 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSC---HHHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecc---hhhhhhhh
Confidence 457799999999998776554332110013544 99999999976411 1234444322221 11111 10
Q ss_pred --CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 108 --SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 108 --~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
..++++||+|++.. ...|..+ ...++.++.+ +|||||+|++.....
T Consensus 128 ~~~~~~~~fD~V~~~~----~l~~~~d-------~~~~l~~~~r------------------~LkpgG~l~i~~~~~ 175 (292)
T 2aot_A 128 LEKKELQKWDFIHMIQ----MLYYVKD-------IPATLKFFHS------------------LLGTNAKMLIIVVSG 175 (292)
T ss_dssp HTTTCCCCEEEEEEES----CGGGCSC-------HHHHHHHHHH------------------TEEEEEEEEEEEECT
T ss_pred ccccCCCceeEEEEee----eeeecCC-------HHHHHHHHHH------------------HcCCCcEEEEEEecC
Confidence 01357899999953 2233333 5578888888 999999999986543
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.9e-12 Score=104.22 Aligned_cols=105 Identities=11% Similarity=0.206 Sum_probs=74.9
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
.++.+|||+|||+|+.+..+++.+++ +++|+++|+++.++.. .....+++++.+|+.+.... +..-...
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~---~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~-l~~~~~~ 153 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPE---DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDE-MIKDEKN 153 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCT---TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHH-HHHSGGG
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHH-HHhccCC
Confidence 46779999999999999999999864 5899999999998654 22335789999987643111 1000001
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
.++||+|++|... .+ ....+..+.+ +|||||+|++.
T Consensus 154 ~~~fD~V~~d~~~-------~~-------~~~~l~~~~~------------------~LkpGG~lv~d 189 (247)
T 1sui_A 154 HGSYDFIFVDADK-------DN-------YLNYHKRLID------------------LVKVGGVIGYD 189 (247)
T ss_dssp TTCBSEEEECSCS-------TT-------HHHHHHHHHH------------------HBCTTCCEEEE
T ss_pred CCCEEEEEEcCch-------HH-------HHHHHHHHHH------------------hCCCCeEEEEe
Confidence 3689999997531 11 3356677777 99999999985
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.27 E-value=3e-12 Score=105.52 Aligned_cols=103 Identities=13% Similarity=0.044 Sum_probs=79.1
Q ss_pred cCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhh
Q 038391 34 YKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 34 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
...++++.+|||+|||+|.++..+++..+ .++|+|+|+++.+++.+ ....++.++++|+.+. .
T Consensus 114 ~~~~~~~~~VLDlgcG~G~~s~~la~~~~----~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~------ 182 (272)
T 3a27_A 114 AFISNENEVVVDMFAGIGYFTIPLAKYSK----PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-E------ 182 (272)
T ss_dssp HTSCCTTCEEEETTCTTTTTHHHHHHHTC----CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-C------
T ss_pred HHhcCCCCEEEEecCcCCHHHHHHHHhCC----CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-C------
Confidence 44578899999999999999999999853 36999999999997541 1224688999998765 2
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
..++||+|++|++. . ....+..+.+ .|||||++++..+..
T Consensus 183 --~~~~~D~Vi~d~p~------~---------~~~~l~~~~~------------------~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 183 --LKDVADRVIMGYVH------K---------THKFLDKTFE------------------FLKDRGVIHYHETVA 222 (272)
T ss_dssp --CTTCEEEEEECCCS------S---------GGGGHHHHHH------------------HEEEEEEEEEEEEEE
T ss_pred --ccCCceEEEECCcc------c---------HHHHHHHHHH------------------HcCCCCEEEEEEcCc
Confidence 13589999998752 1 1235555566 899999999988765
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-11 Score=97.51 Aligned_cols=98 Identities=14% Similarity=0.163 Sum_probs=72.3
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC----CCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH----CDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~----~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.++++.+|||+|||+|.++..+++. +.+|+|+|+++.++..+. ...+++++++|+.+... ..
T Consensus 67 ~~~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~--------~~ 132 (231)
T 1vbf_A 67 DLHKGQKVLEIGTGIGYYTALIAEI------VDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE--------EE 132 (231)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHH------SSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG--------GG
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHH------cCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccc--------cC
Confidence 3678899999999999999999998 379999999999875421 11178999998876321 14
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
++||+|+++... +... ..+.+ .|||||++++..-..
T Consensus 133 ~~fD~v~~~~~~-----~~~~------------~~~~~------------------~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 133 KPYDRVVVWATA-----PTLL------------CKPYE------------------QLKEGGIMILPIGVG 168 (231)
T ss_dssp CCEEEEEESSBB-----SSCC------------HHHHH------------------TEEEEEEEEEEECSS
T ss_pred CCccEEEECCcH-----HHHH------------HHHHH------------------HcCCCcEEEEEEcCC
Confidence 689999996531 1111 13444 899999999987654
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.26 E-value=6.2e-12 Score=105.99 Aligned_cols=103 Identities=21% Similarity=0.348 Sum_probs=74.9
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-----------------CCCCeEEEEeeecC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-----------------CDARVQTVSADVIN 98 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-----------------~~~~~~~~~~d~~~ 98 (186)
.++++.+|||+|||+|.++..+++.+++ .++|+|+|+++.++..+. ...+++++++|+.+
T Consensus 102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~ 178 (336)
T 2b25_A 102 DINPGDTVLEAGSGSGGMSLFLSKAVGS---QGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISG 178 (336)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCT---TCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTC
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHH
Confidence 3688999999999999999999998753 489999999998865411 12579999999876
Q ss_pred CChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 99 LPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 99 ~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
.... + +.++||+|+++++.+. ..+..+.+ +|||||+|++.
T Consensus 179 ~~~~-~-----~~~~fD~V~~~~~~~~----------------~~l~~~~~------------------~LkpgG~lv~~ 218 (336)
T 2b25_A 179 ATED-I-----KSLTFDAVALDMLNPH----------------VTLPVFYP------------------HLKHGGVCAVY 218 (336)
T ss_dssp CC-------------EEEEEECSSSTT----------------TTHHHHGG------------------GEEEEEEEEEE
T ss_pred cccc-c-----CCCCeeEEEECCCCHH----------------HHHHHHHH------------------hcCCCcEEEEE
Confidence 5311 1 2457999999763111 14566677 99999999987
Q ss_pred Ecc
Q 038391 179 LLE 181 (186)
Q Consensus 179 ~~~ 181 (186)
...
T Consensus 219 ~~~ 221 (336)
T 2b25_A 219 VVN 221 (336)
T ss_dssp ESS
T ss_pred eCC
Confidence 654
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=1e-11 Score=104.21 Aligned_cols=101 Identities=19% Similarity=0.203 Sum_probs=74.4
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.++++.+|||+|||+|.++..+++..+. .++|+|+|+++.+++.+ ....++++.++|+.+....
T Consensus 72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~---~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~------- 141 (317)
T 1dl5_A 72 GLDKGMRVLEIGGGTGYNAAVMSRVVGE---KGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE------- 141 (317)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCT---TCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG-------
T ss_pred CCCCcCEEEEecCCchHHHHHHHHhcCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcccc-------
Confidence 4678999999999999999999998642 36799999999997542 1224589999998764322
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
.++||+|+++.... ... ..+.+ .|||||++++..-..
T Consensus 142 -~~~fD~Iv~~~~~~-----~~~------------~~~~~------------------~LkpgG~lvi~~~~~ 178 (317)
T 1dl5_A 142 -FSPYDVIFVTVGVD-----EVP------------ETWFT------------------QLKEGGRVIVPINLK 178 (317)
T ss_dssp -GCCEEEEEECSBBS-----CCC------------HHHHH------------------HEEEEEEEEEEBCBG
T ss_pred -CCCeEEEEEcCCHH-----HHH------------HHHHH------------------hcCCCcEEEEEECCC
Confidence 36899999975321 111 23344 899999999986543
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=7.2e-12 Score=106.71 Aligned_cols=101 Identities=18% Similarity=0.186 Sum_probs=73.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
+.++.+|||+|||+|.++..+++. + ..+|+|+|+++ ++.. .....+++++++|+.+.+.
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~-g----~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------- 129 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA-G----ARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVEL-------- 129 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT-T----CSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC--------
T ss_pred cCCCCEEEEEeccchHHHHHHHHC-C----CCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccC--------
Confidence 357889999999999999999987 2 36999999995 6543 2334569999999887642
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
+.++||+|+++..... ..+... ...++....+ +|||||.++.
T Consensus 130 ~~~~fD~Iis~~~~~~-l~~~~~-------~~~~l~~~~r------------------~LkpgG~li~ 171 (349)
T 3q7e_A 130 PVEKVDIIISEWMGYC-LFYESM-------LNTVLHARDK------------------WLAPDGLIFP 171 (349)
T ss_dssp SSSCEEEEEECCCBBT-BTBTCC-------HHHHHHHHHH------------------HEEEEEEEES
T ss_pred CCCceEEEEEcccccc-ccCchh-------HHHHHHHHHH------------------hCCCCCEEcc
Confidence 3579999999642111 111111 4567777777 9999999873
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.7e-11 Score=104.07 Aligned_cols=100 Identities=18% Similarity=0.242 Sum_probs=72.6
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
+.++.+|||+|||+|.++..+++. + ..+|+|+|+++ ++.. .....+++++++|+.+...
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~-g----~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------- 127 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKA-G----AKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHL-------- 127 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHT-T----CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC--------
T ss_pred hcCCCEEEEeeccCcHHHHHHHHc-C----CCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcC--------
Confidence 567889999999999999999987 2 35999999996 7543 2233689999999876542
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEE
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV 176 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lv 176 (186)
+.++||+|+++.... ...+. .....++..+.+ +|||||.++
T Consensus 128 ~~~~~D~Ivs~~~~~-~l~~~-------~~~~~~l~~~~~------------------~LkpgG~li 168 (340)
T 2fyt_A 128 PVEKVDVIISEWMGY-FLLFE-------SMLDSVLYAKNK------------------YLAKGGSVY 168 (340)
T ss_dssp SCSCEEEEEECCCBT-TBTTT-------CHHHHHHHHHHH------------------HEEEEEEEE
T ss_pred CCCcEEEEEEcCchh-hccCH-------HHHHHHHHHHHh------------------hcCCCcEEE
Confidence 347899999964210 11111 124466777777 999999998
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.9e-12 Score=103.28 Aligned_cols=98 Identities=22% Similarity=0.357 Sum_probs=75.3
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-CCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-CDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
+++.+|||+|||+|.++..+++.++ +.+|+|+|+++.++..+. ...++.+..+|+.+++. +.++||+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~--------~~~~fD~ 151 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALP----EITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPF--------SDTSMDA 151 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCT----TSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSB--------CTTCEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCC----CCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCC--------CCCceeE
Confidence 5788999999999999999999863 479999999999976522 22567888898876542 3568999
Q ss_pred EEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 117 V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
|++... . ..+.++.+ +|||||++++.....+
T Consensus 152 v~~~~~--------~----------~~l~~~~~------------------~L~pgG~l~~~~~~~~ 182 (269)
T 1p91_A 152 IIRIYA--------P----------CKAEELAR------------------VVKPGGWVITATPGPR 182 (269)
T ss_dssp EEEESC--------C----------CCHHHHHH------------------HEEEEEEEEEEEECTT
T ss_pred EEEeCC--------h----------hhHHHHHH------------------hcCCCcEEEEEEcCHH
Confidence 998432 1 13455666 9999999999886654
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.1e-12 Score=101.60 Aligned_cols=101 Identities=18% Similarity=0.242 Sum_probs=77.7
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-------CCCCeEEEEeeecCCChhhHhhhC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-------CDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-------~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
.++++.+|||+|||+|.++..+++.+++ +.+|+++|+++.++..+. ...++++.++|+.+.+.
T Consensus 93 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~------- 162 (258)
T 2pwy_A 93 DLAPGMRVLEAGTGSGGLTLFLARAVGE---KGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAEL------- 162 (258)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCT---TSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCC-------
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCC-------
Confidence 4688999999999999999999998753 589999999999865421 24678999998876532
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+.++||+|+++.+ . ....+..+.+ +|||||++++....
T Consensus 163 -~~~~~D~v~~~~~-------~---------~~~~l~~~~~------------------~L~~gG~l~~~~~~ 200 (258)
T 2pwy_A 163 -EEAAYDGVALDLM-------E---------PWKVLEKAAL------------------ALKPDRFLVAYLPN 200 (258)
T ss_dssp -CTTCEEEEEEESS-------C---------GGGGHHHHHH------------------HEEEEEEEEEEESC
T ss_pred -CCCCcCEEEECCc-------C---------HHHHHHHHHH------------------hCCCCCEEEEEeCC
Confidence 3468999999653 1 1145666666 99999999997754
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.7e-13 Score=108.53 Aligned_cols=72 Identities=18% Similarity=0.171 Sum_probs=58.0
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
.++.+|||+|||+|.++..+++. +.+|+|+|+++.++..+ ....+++++++|+.+.. +
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---------~ 141 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALT------GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA---------S 141 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG---------G
T ss_pred cCCCEEEECccccCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc---------c
Confidence 47889999999999999999987 48999999999997642 12247999999987543 2
Q ss_pred CCCccEEEeCCCCC
Q 038391 111 QKGFSVILSDMCPS 124 (186)
Q Consensus 111 ~~~~D~V~~d~~~~ 124 (186)
.++||+|+++.++.
T Consensus 142 ~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 142 FLKADVVFLSPPWG 155 (241)
T ss_dssp GCCCSEEEECCCCS
T ss_pred cCCCCEEEECCCcC
Confidence 46899999987643
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.6e-12 Score=103.41 Aligned_cols=112 Identities=18% Similarity=0.217 Sum_probs=75.9
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----CCCC--------------------------
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----HCDA-------------------------- 87 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----~~~~-------------------------- 87 (186)
.++.+|||+|||+|.++..+++.. ..+|+|+|+++.++..+ ....
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACES-----FTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKE 129 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGT-----EEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhcc-----cCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHH
Confidence 567899999999999999988762 13899999999987542 1111
Q ss_pred -----Ce-EEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCC
Q 038391 88 -----RV-QTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSD 161 (186)
Q Consensus 88 -----~~-~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (186)
++ ++.++|+.+.... .. ...++||+|++... .+... ........++..+.+
T Consensus 130 ~~l~~~v~~~~~~d~~~~~~~--~~--~~~~~fD~v~~~~~-----l~~~~--~~~~~~~~~l~~~~~------------ 186 (265)
T 2i62_A 130 EKLRRAIKQVLKCDVTQSQPL--GG--VSLPPADCLLSTLC-----LDAAC--PDLPAYRTALRNLGS------------ 186 (265)
T ss_dssp HHHHHHEEEEEECCTTSSSTT--TT--CCCCCEEEEEEESC-----HHHHC--SSHHHHHHHHHHHHT------------
T ss_pred HHhhhhheeEEEeeeccCCCC--Cc--cccCCccEEEEhhh-----hhhhc--CChHHHHHHHHHHHh------------
Confidence 26 8888988765421 00 01278999998432 11000 012235677888888
Q ss_pred CCCCCcccccCcEEEEEEccCC
Q 038391 162 SSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 162 ~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
+|||||+|++..+.++
T Consensus 187 ------~LkpgG~li~~~~~~~ 202 (265)
T 2i62_A 187 ------LLKPGGFLVMVDALKS 202 (265)
T ss_dssp ------TEEEEEEEEEEEESSC
T ss_pred ------hCCCCcEEEEEecCCC
Confidence 9999999999875543
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.25 E-value=7.5e-12 Score=98.21 Aligned_cols=102 Identities=18% Similarity=0.213 Sum_probs=74.7
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEE
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVI 117 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V 117 (186)
+++.+|||+|||+|.++..+++. +.+|+|+|+++.++....... .+++++|+.+.... .+.++||+|
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~------~~~~~~~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~------~~~~~fD~v 97 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN------GTRVSGIEAFPEAAEQAKEKL-DHVVLGDIETMDMP------YEEEQFDCV 97 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT------TCEEEEEESSHHHHHHHHTTS-SEEEESCTTTCCCC------SCTTCEEEE
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHHhC-CcEEEcchhhcCCC------CCCCccCEE
Confidence 57889999999999999999987 379999999999876533221 36778887653211 135789999
Q ss_pred EeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 118 LSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 118 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
++... ..+..+ ...++..+.+ +|||||.+++.+..
T Consensus 98 ~~~~~----l~~~~~-------~~~~l~~~~~------------------~L~~gG~l~~~~~~ 132 (230)
T 3cc8_A 98 IFGDV----LEHLFD-------PWAVIEKVKP------------------YIKQNGVILASIPN 132 (230)
T ss_dssp EEESC----GGGSSC-------HHHHHHHTGG------------------GEEEEEEEEEEEEC
T ss_pred EECCh----hhhcCC-------HHHHHHHHHH------------------HcCCCCEEEEEeCC
Confidence 98532 122222 3477888887 99999999998754
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.5e-12 Score=101.09 Aligned_cols=101 Identities=20% Similarity=0.311 Sum_probs=75.8
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
..++.+|||+|||+|.++..+++.++ +.+|+++|+++.++..+ ....+++++++|+.+.... ..
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~- 122 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALP----EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEK----LE- 122 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCT----TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHH----HT-
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh----cc-
Confidence 35678999999999999999999874 48999999999986542 2234689999988654211 11
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
..++||+|+++.+.. .....+..+.+ +|||||++++.
T Consensus 123 ~~~~fD~I~~~~~~~--------------~~~~~l~~~~~------------------~L~pgG~lv~~ 159 (233)
T 2gpy_A 123 LYPLFDVLFIDAAKG--------------QYRRFFDMYSP------------------MVRPGGLILSD 159 (233)
T ss_dssp TSCCEEEEEEEGGGS--------------CHHHHHHHHGG------------------GEEEEEEEEEE
T ss_pred cCCCccEEEECCCHH--------------HHHHHHHHHHH------------------HcCCCeEEEEE
Confidence 146899999965311 14467777887 99999999996
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.24 E-value=6.8e-13 Score=108.31 Aligned_cols=113 Identities=19% Similarity=0.161 Sum_probs=73.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC-------------------------------
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC------------------------------- 85 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~------------------------------- 85 (186)
..++.+|||+|||+|.++..++... ..+|+|+|+|+.|++.++.
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~-----~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~ 127 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDS-----FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEK 127 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGT-----EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhh-----hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhH
Confidence 3567899999999998887766551 2379999999998763110
Q ss_pred ----CCCeE-EEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCC
Q 038391 86 ----DARVQ-TVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNS 160 (186)
Q Consensus 86 ----~~~~~-~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (186)
..++. ++++|+.....- ... ..++||+|++... .+... ........++.++.+
T Consensus 128 ~~~~~~~i~~~~~~D~~~~~~~--~~~--~~~~fD~V~~~~~-----l~~i~--~~~~~~~~~l~~i~r----------- 185 (263)
T 2a14_A 128 EEKLRAAVKRVLKCDVHLGNPL--APA--VLPLADCVLTLLA-----MECAC--CSLDAYRAALCNLAS----------- 185 (263)
T ss_dssp HHHHHHHEEEEEECCTTSSSTT--TTC--CCCCEEEEEEESC-----HHHHC--SSHHHHHHHHHHHHT-----------
T ss_pred HHHHHhhhheEEeccccCCCCC--Ccc--ccCCCCEeeehHH-----HHHhc--CCHHHHHHHHHHHHH-----------
Confidence 01233 778888763210 000 1458999999542 11110 001224578888888
Q ss_pred CCCCCCcccccCcEEEEEEccCC
Q 038391 161 DSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 161 ~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
+|||||+|++..+..+
T Consensus 186 -------~LKPGG~li~~~~~~~ 201 (263)
T 2a14_A 186 -------LLKPGGHLVTTVTLRL 201 (263)
T ss_dssp -------TEEEEEEEEEEEESSC
T ss_pred -------HcCCCcEEEEEEeecC
Confidence 9999999999875443
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.24 E-value=4e-12 Score=102.67 Aligned_cols=113 Identities=16% Similarity=0.092 Sum_probs=74.7
Q ss_pred CCCCEEEEEcccCChHHHHHHHH--hCCCCCCCeEEEEeCCCCCCCCcC----CC------CC-----------------
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQS--LGPLDNGGSVVGIDVKKVKVPSLH----CD------AR----------------- 88 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~--~~~~~~~~~v~gvDis~~~i~~~~----~~------~~----------------- 88 (186)
.++.+|||+|||+|.++..+++. .+ +.+|+|+|+++.+++.++ .. .+
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~~~~~----~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLLHRRS----LRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYL 125 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGG----EEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHhccC----CCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccch
Confidence 35679999999999999999987 32 479999999999975421 11 01
Q ss_pred --------eE-------------EEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHH
Q 038391 89 --------VQ-------------TVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLA 147 (186)
Q Consensus 89 --------~~-------------~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (186)
++ +.++|+.+.... ..+. .+.+||+|+++.+......+. +....+....++..+
T Consensus 126 ~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~--~~~~-~~~~fD~Iv~npp~~~~~~~~--~~~~~~~~~~~l~~~ 200 (250)
T 1o9g_A 126 EAAQAARRLRERLTAEGGALPCAIRTADVFDPRAL--SAVL-AGSAPDVVLTDLPYGERTHWE--GQVPGQPVAGLLRSL 200 (250)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGH--HHHH-TTCCCSEEEEECCGGGSSSSS--SCCCHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhccccccccccceeeccccccccc--cccc-CCCCceEEEeCCCeecccccc--ccccccHHHHHHHHH
Confidence 56 888887653210 0000 134899999986422211111 011234456778888
Q ss_pred cCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 148 LGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
.+ +|||||+|++
T Consensus 201 ~~------------------~LkpgG~l~~ 212 (250)
T 1o9g_A 201 AS------------------ALPAHAVIAV 212 (250)
T ss_dssp HH------------------HSCTTCEEEE
T ss_pred HH------------------hcCCCcEEEE
Confidence 87 9999999998
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.4e-12 Score=101.11 Aligned_cols=98 Identities=16% Similarity=0.137 Sum_probs=73.0
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
.++.+|||+|||+|..+..+++.++. +++|+++|+++.++..+ ....+++++++|+.+.. .. .
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~---~ 124 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISI---SSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIA----AG---Q 124 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCT---TCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHH----TT---C
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHh----cc---C
Confidence 35679999999999999999998753 58999999999986542 22346889998875421 11 2
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
.+ ||+|+++... .+ ....+..+.+ +|||||.|++.
T Consensus 125 ~~-fD~v~~~~~~-------~~-------~~~~l~~~~~------------------~LkpgG~lv~~ 159 (210)
T 3c3p_A 125 RD-IDILFMDCDV-------FN-------GADVLERMNR------------------CLAKNALLIAV 159 (210)
T ss_dssp CS-EEEEEEETTT-------SC-------HHHHHHHHGG------------------GEEEEEEEEEE
T ss_pred CC-CCEEEEcCCh-------hh-------hHHHHHHHHH------------------hcCCCeEEEEE
Confidence 35 9999997421 11 3467777887 99999999984
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-11 Score=93.57 Aligned_cols=100 Identities=15% Similarity=0.181 Sum_probs=74.6
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
.++++.+|||+|||+|.++..+++. ..+|+|+|+++.++..+ ....++++.++|+.+. ..
T Consensus 30 ~~~~~~~vldiG~G~G~~~~~l~~~------~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~------ 96 (192)
T 1l3i_A 30 EPGKNDVAVDVGCGTGGVTLELAGR------VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA-LC------ 96 (192)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHTT------SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH-HT------
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHh------cCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHh-cc------
Confidence 3678899999999999999999987 37999999999886542 2225788888876541 11
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
..++||+|+++... +. ....+..+.+ +|+|||.+++....
T Consensus 97 -~~~~~D~v~~~~~~-----~~---------~~~~l~~~~~------------------~l~~gG~l~~~~~~ 136 (192)
T 1l3i_A 97 -KIPDIDIAVVGGSG-----GE---------LQEILRIIKD------------------KLKPGGRIIVTAIL 136 (192)
T ss_dssp -TSCCEEEEEESCCT-----TC---------HHHHHHHHHH------------------TEEEEEEEEEEECB
T ss_pred -cCCCCCEEEECCch-----HH---------HHHHHHHHHH------------------hcCCCcEEEEEecC
Confidence 12589999996431 11 3467777777 99999999998764
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.6e-11 Score=95.15 Aligned_cols=90 Identities=20% Similarity=0.245 Sum_probs=68.7
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
..++.+|||+|||+|.++..++ .+|+|+|+++. +++++++|+.+.+. +.++||+
T Consensus 65 ~~~~~~vLDiG~G~G~~~~~l~---------~~v~~~D~s~~---------~~~~~~~d~~~~~~--------~~~~fD~ 118 (215)
T 2zfu_A 65 RPASLVVADFGCGDCRLASSIR---------NPVHCFDLASL---------DPRVTVCDMAQVPL--------EDESVDV 118 (215)
T ss_dssp SCTTSCEEEETCTTCHHHHHCC---------SCEEEEESSCS---------STTEEESCTTSCSC--------CTTCEEE
T ss_pred cCCCCeEEEECCcCCHHHHHhh---------ccEEEEeCCCC---------CceEEEeccccCCC--------CCCCEeE
Confidence 4678899999999999887661 58999999998 36678888776542 3578999
Q ss_pred EEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 117 V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
|++.... +..+ ...++..+.+ +|+|||.+++..+..
T Consensus 119 v~~~~~l-----~~~~-------~~~~l~~~~~------------------~L~~gG~l~i~~~~~ 154 (215)
T 2zfu_A 119 AVFCLSL-----MGTN-------IRDFLEEANR------------------VLKPGGLLKVAEVSS 154 (215)
T ss_dssp EEEESCC-----CSSC-------HHHHHHHHHH------------------HEEEEEEEEEEECGG
T ss_pred EEEehhc-----cccC-------HHHHHHHHHH------------------hCCCCeEEEEEEcCC
Confidence 9996532 2222 4567777777 999999999987653
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-11 Score=105.76 Aligned_cols=92 Identities=22% Similarity=0.299 Sum_probs=73.0
Q ss_pred chhhhhHHhHHHHHHHcC-------CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeE
Q 038391 18 GYVARSAFKLLQIQKQYK-------LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQ 90 (186)
Q Consensus 18 ~y~~r~~~~l~~~~~~~~-------~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~ 90 (186)
+.-+|+.+||.|+...|. .+++|.++|||||+||+||..++++ +++|+|||+.+-. ......++++
T Consensus 183 ~~pSRa~lKL~Ea~~~F~~~~~~~~~l~~G~~vlDLGAaPGGWT~~l~~r------g~~V~aVD~~~l~-~~l~~~~~V~ 255 (375)
T 4auk_A 183 DAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKR------NMWVYSVDNGPMA-QSLMDTGQVT 255 (375)
T ss_dssp TSSCTTHHHHHHHHHHHSCGGGHHHHSCTTCEEEEETCTTCHHHHHHHHT------TCEEEEECSSCCC-HHHHTTTCEE
T ss_pred CCCCHHHHHHHHHHHhccchhhhhccCCCCCEEEEeCcCCCHHHHHHHHC------CCEEEEEEhhhcC-hhhccCCCeE
Confidence 456999999999887763 4688999999999999999999998 6899999987532 2223446899
Q ss_pred EEEeeecCCChhhHhhhCCCCCCccEEEeCCCCC
Q 038391 91 TVSADVINLPSNQVRALSPKQKGFSVILSDMCPS 124 (186)
Q Consensus 91 ~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~ 124 (186)
++++|+..... ..++||+|+|||.++
T Consensus 256 ~~~~d~~~~~~--------~~~~~D~vvsDm~~~ 281 (375)
T 4auk_A 256 WLREDGFKFRP--------TRSNISWMVCDMVEK 281 (375)
T ss_dssp EECSCTTTCCC--------CSSCEEEEEECCSSC
T ss_pred EEeCccccccC--------CCCCcCEEEEcCCCC
Confidence 99999876542 246899999999643
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.6e-12 Score=100.42 Aligned_cols=108 Identities=18% Similarity=0.283 Sum_probs=75.3
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCC-CCCCCeEEEEeCCCCCCCCcC------C-----CCCeEEEEeeecCCChhh
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGP-LDNGGSVVGIDVKKVKVPSLH------C-----DARVQTVSADVINLPSNQ 103 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~-~~~~~~v~gvDis~~~i~~~~------~-----~~~~~~~~~d~~~~~~~~ 103 (186)
.++++.+|||+|||+|.++..+++..+. .++.++|+++|+++.++..+. . ..+++++++|+.......
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence 4678899999999999999999998640 001369999999999865421 1 357999999987653100
Q ss_pred HhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 104 VRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 104 l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
.. ...+||+|+++...+ + .+..+.+ .|||||+|++.+..+
T Consensus 157 ~~----~~~~fD~I~~~~~~~----~-------------~~~~~~~------------------~LkpgG~lv~~~~~~ 196 (227)
T 2pbf_A 157 KK----ELGLFDAIHVGASAS----E-------------LPEILVD------------------LLAENGKLIIPIEED 196 (227)
T ss_dssp HH----HHCCEEEEEECSBBS----S-------------CCHHHHH------------------HEEEEEEEEEEEEET
T ss_pred Cc----cCCCcCEEEECCchH----H-------------HHHHHHH------------------hcCCCcEEEEEEccC
Confidence 00 135899999965321 1 1233445 899999999987653
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-11 Score=101.61 Aligned_cols=100 Identities=17% Similarity=0.311 Sum_probs=76.1
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------C-CCCCeEEEEeeecCCChhhHhhhC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------H-CDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~-~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
.++++.+|||+|||+|.++..+++.+.+ +.+|+|+|+++.+++.+ . ...++++.++|+.+..
T Consensus 107 ~~~~~~~VLD~G~G~G~~~~~la~~~~~---~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~-------- 175 (275)
T 1yb2_A 107 GLRPGMDILEVGVGSGNMSSYILYALNG---KGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI-------- 175 (275)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHTT---SSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC--------
T ss_pred CCCCcCEEEEecCCCCHHHHHHHHHcCC---CCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccC--------
Confidence 4678899999999999999999998543 57999999999886541 1 2357889888876521
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+.++||+|+++++ + ....+..+.+ .|||||++++....
T Consensus 176 -~~~~fD~Vi~~~~---------~-------~~~~l~~~~~------------------~LkpgG~l~i~~~~ 213 (275)
T 1yb2_A 176 -SDQMYDAVIADIP---------D-------PWNHVQKIAS------------------MMKPGSVATFYLPN 213 (275)
T ss_dssp -CSCCEEEEEECCS---------C-------GGGSHHHHHH------------------TEEEEEEEEEEESS
T ss_pred -cCCCccEEEEcCc---------C-------HHHHHHHHHH------------------HcCCCCEEEEEeCC
Confidence 3468999999653 1 1145666666 89999999998754
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.22 E-value=8.1e-12 Score=105.95 Aligned_cols=105 Identities=19% Similarity=0.173 Sum_probs=76.7
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
.++.+|||+|||+|.++..+++..+ ..+|+|+|+++.+++.+ ....+.+++.+|+... ..+
T Consensus 195 ~~~~~VLDlGcG~G~~~~~la~~~~----~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~----------~~~ 260 (343)
T 2pjd_A 195 HTKGKVLDVGCGAGVLSVAFARHSP----KIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSE----------VKG 260 (343)
T ss_dssp TCCSBCCBTTCTTSHHHHHHHHHCT----TCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTT----------CCS
T ss_pred CCCCeEEEecCccCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEcccccc----------ccC
Confidence 4567999999999999999999853 36999999999987542 1222356777776543 246
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
+||+|+++.+.+.... ........++..+.+ +|||||.|++..-
T Consensus 261 ~fD~Iv~~~~~~~g~~------~~~~~~~~~l~~~~~------------------~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 261 RFDMIISNPPFHDGMQ------TSLDAAQTLIRGAVR------------------HLNSGGELRIVAN 304 (343)
T ss_dssp CEEEEEECCCCCSSSH------HHHHHHHHHHHHHGG------------------GEEEEEEEEEEEE
T ss_pred CeeEEEECCCcccCcc------CCHHHHHHHHHHHHH------------------hCCCCcEEEEEEc
Confidence 8999999875332111 123346688888888 9999999998754
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-11 Score=107.13 Aligned_cols=112 Identities=21% Similarity=0.248 Sum_probs=75.8
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-----CCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-----CDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-----~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.++|.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+. .....++.++|+.+.. ..+ .
T Consensus 212 ~~~g~~VLDlg~GtG~~sl~~a~~------ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l----~~~---~ 278 (393)
T 4dmg_A 212 VRPGERVLDVYSYVGGFALRAARK------GAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTL----RGL---E 278 (393)
T ss_dssp CCTTCEEEEESCTTTHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHH----HTC---C
T ss_pred hcCCCeEEEcccchhHHHHHHHHc------CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHH----HHh---c
Confidence 456999999999999999999986 456999999999975421 1112345677765431 111 2
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+.||+|++|+++.... ..+...........+..+.+ +|||||+|++....
T Consensus 279 ~~fD~Ii~dpP~f~~~--~~~~~~~~~~~~~ll~~a~~------------------~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 279 GPFHHVLLDPPTLVKR--PEELPAMKRHLVDLVREALR------------------LLAEEGFLWLSSCS 328 (393)
T ss_dssp CCEEEEEECCCCCCSS--GGGHHHHHHHHHHHHHHHHH------------------TEEEEEEEEEEECC
T ss_pred CCCCEEEECCCcCCCC--HHHHHHHHHHHHHHHHHHHH------------------hcCCCCEEEEEECC
Confidence 3499999997642222 12233334445567777777 99999999966544
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.5e-11 Score=104.78 Aligned_cols=116 Identities=17% Similarity=0.167 Sum_probs=78.5
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCC-CeEEEEeeecCCChhhHhhhCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDA-RVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~-~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.++.+|||+|||+|.++..+++. + ..+|+|+|+++.+++. +.... +++++++|+.+.. ..+..
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~-g----a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l----~~~~~ 281 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMG-G----AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYF----KYARR 281 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHT-T----BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHH----HHHHH
T ss_pred cCCCeEEEEeeccCHHHHHHHHC-C----CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHH----HHHHH
Confidence 57889999999999999999985 1 2489999999999754 22223 7999999986532 11111
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
.+.+||+|++|++........ .....+.....+..+.+ +|+|||.|++..-..
T Consensus 282 ~~~~fD~Ii~DPP~~~~~~~~--~~~~~~~~~~ll~~~~~------------------~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 282 HHLTYDIIIIDPPSFARNKKE--VFSVSKDYHKLIRQGLE------------------ILSENGLIIASTNAA 334 (385)
T ss_dssp TTCCEEEEEECCCCC-----C--CCCHHHHHHHHHHHHHH------------------TEEEEEEEEEEECCT
T ss_pred hCCCccEEEECCCCCCCChhh--HHHHHHHHHHHHHHHHH------------------hcCCCcEEEEEeCCC
Confidence 245899999997642211011 11122334456666666 999999999987554
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-11 Score=100.11 Aligned_cols=111 Identities=11% Similarity=0.145 Sum_probs=74.9
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------C--------CCCCeEEEEeeecCCChhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------H--------CDARVQTVSADVINLPSNQ 103 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~--------~~~~~~~~~~d~~~~~~~~ 103 (186)
+++.+|||+|||+|.++..+++..+ ..+|+|+|+++.++..+ . ...+++++++|+.+...
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~-- 121 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFP----EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLP-- 121 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHST----TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGG--
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC----CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHH--
Confidence 4678999999999999999999863 47999999999986431 0 23579999999876321
Q ss_pred HhhhCCCCCCccEEEeCCCCCC-CCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 104 VRALSPKQKGFSVILSDMCPSV-SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 104 l~~~~~~~~~~D~V~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
... ..+++|.|+...+... ...+..... ....++..+.+ +|||||.|++.+
T Consensus 122 --~~~-~~~~~d~v~~~~p~p~~k~~~~~~r~----~~~~~l~~~~~------------------~LkpgG~l~~~t 173 (246)
T 2vdv_E 122 --NFF-EKGQLSKMFFCFPDPHFKQRKHKARI----ITNTLLSEYAY------------------VLKEGGVVYTIT 173 (246)
T ss_dssp --GTS-CTTCEEEEEEESCCCC------CSSC----CCHHHHHHHHH------------------HEEEEEEEEEEE
T ss_pred --Hhc-cccccCEEEEECCCcccccchhHHhh----ccHHHHHHHHH------------------HcCCCCEEEEEe
Confidence 111 3568999987553221 111110000 01356777777 999999999964
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-11 Score=97.98 Aligned_cols=104 Identities=18% Similarity=0.283 Sum_probs=74.0
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCC--CCCCCeEEEEeCCCCCCCCcCC-----------CCCeEEEEeeecCCChh
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGP--LDNGGSVVGIDVKKVKVPSLHC-----------DARVQTVSADVINLPSN 102 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~--~~~~~~v~gvDis~~~i~~~~~-----------~~~~~~~~~d~~~~~~~ 102 (186)
.++++.+|||+|||+|.++..+++.++. ..+.++|+++|+++.++..+.. ..+++++.+|+.....
T Consensus 81 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~- 159 (227)
T 1r18_A 81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP- 159 (227)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG-
T ss_pred hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCC-
Confidence 4678899999999999999999997631 0001599999999998755211 3478999998875321
Q ss_pred hHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 103 QVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 103 ~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
..++||+|+++... +.. ...+.+ .|||||+|++.+...
T Consensus 160 -------~~~~fD~I~~~~~~-----~~~------------~~~~~~------------------~LkpgG~lvi~~~~~ 197 (227)
T 1r18_A 160 -------PNAPYNAIHVGAAA-----PDT------------PTELIN------------------QLASGGRLIVPVGPD 197 (227)
T ss_dssp -------GGCSEEEEEECSCB-----SSC------------CHHHHH------------------TEEEEEEEEEEESCS
T ss_pred -------cCCCccEEEECCch-----HHH------------HHHHHH------------------HhcCCCEEEEEEecC
Confidence 13689999996532 111 133445 899999999998753
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.21 E-value=6.5e-11 Score=100.66 Aligned_cols=100 Identities=19% Similarity=0.271 Sum_probs=71.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
..++.+|||+|||+|.++..+++. + ..+|+|+|+++ ++.. .....+++++++|+.+...
T Consensus 48 ~~~~~~VLDiGcGtG~ls~~la~~-g----~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~-------- 113 (348)
T 2y1w_A 48 DFKDKIVLDVGCGSGILSFFAAQA-G----ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL-------- 113 (348)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHT-T----CSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC--------
T ss_pred cCCcCEEEEcCCCccHHHHHHHhC-C----CCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCC--------
Confidence 457889999999999999999986 2 46999999996 6432 2233679999999876532
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
.++||+|+++.. +.+.... .....+..+.+ +|||||.+++.
T Consensus 114 -~~~~D~Ivs~~~----~~~~~~~-----~~~~~l~~~~~------------------~LkpgG~li~~ 154 (348)
T 2y1w_A 114 -PEQVDIIISEPM----GYMLFNE-----RMLESYLHAKK------------------YLKPSGNMFPT 154 (348)
T ss_dssp -SSCEEEEEECCC----BTTBTTT-----SHHHHHHHGGG------------------GEEEEEEEESC
T ss_pred -CCceeEEEEeCc----hhcCChH-----HHHHHHHHHHh------------------hcCCCeEEEEe
Confidence 358999999642 1111110 12345556667 99999999854
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=8.6e-12 Score=115.43 Aligned_cols=113 Identities=15% Similarity=0.113 Sum_probs=78.3
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCC-CCeEEEEeeecCCChhhHhhhCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCD-ARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~-~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.+|.+|||+|||+|.++..++.. +..+|+++|+|+.++.. +... .+++++++|+.+....
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~-----ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~------- 605 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLG-----GARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLRE------- 605 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHT-----TCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHH-------
T ss_pred cCCCcEEEeeechhHHHHHHHHC-----CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHh-------
Confidence 36889999999999999999885 13579999999999754 2222 4799999998753211
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
..++||+|++|+++........+.....+.....+..+.+ +|+|||+|++..=
T Consensus 606 ~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~------------------~LkpgG~L~~s~~ 658 (703)
T 3v97_A 606 ANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKR------------------LLRAGGTIMFSNN 658 (703)
T ss_dssp CCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHH------------------HEEEEEEEEEEEC
T ss_pred cCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHH------------------hcCCCcEEEEEEC
Confidence 2568999999986422111111111223445567777777 9999999998763
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-10 Score=99.77 Aligned_cols=111 Identities=13% Similarity=0.119 Sum_probs=81.8
Q ss_pred HHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhh
Q 038391 28 LQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 28 ~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
..+...+..++++.+|||+|||+|.++..+++.++ ..+++++|+ +.++..+....+++++.+|+.+ +.
T Consensus 198 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~----~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~------ 265 (372)
T 1fp1_D 198 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYP----LIKGINFDL-PQVIENAPPLSGIEHVGGDMFA-SV------ 265 (372)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT-CC------
T ss_pred HHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCC----CCeEEEeCh-HHHHHhhhhcCCCEEEeCCccc-CC------
Confidence 34555554466788999999999999999999974 479999999 8887765555679999999865 21
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+ .||+|++.. ..+.... ......+..+.+ .|||||+|+|..+.
T Consensus 266 --~--~~D~v~~~~-----~lh~~~d----~~~~~~l~~~~~------------------~L~pgG~l~i~e~~ 308 (372)
T 1fp1_D 266 --P--QGDAMILKA-----VCHNWSD----EKCIEFLSNCHK------------------ALSPNGKVIIVEFI 308 (372)
T ss_dssp --C--CEEEEEEES-----SGGGSCH----HHHHHHHHHHHH------------------HEEEEEEEEEEEEE
T ss_pred --C--CCCEEEEec-----ccccCCH----HHHHHHHHHHHH------------------hcCCCCEEEEEEec
Confidence 2 299999843 2332221 123467777777 99999999987543
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.9e-11 Score=99.60 Aligned_cols=98 Identities=23% Similarity=0.421 Sum_probs=72.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-----CCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-----CDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-----~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
++++.+|||+|||+|.++..+++. +.+|+|+|+++.++..+. ....+++.++|+.+. + +.
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~------g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~-------~--~~ 182 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKL------GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-------L--PF 182 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT------TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-------G--GG
T ss_pred cCCCCEEEEecCCCcHHHHHHHHh------CCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc-------C--cC
Confidence 467899999999999999998886 359999999999975421 111277888776542 1 24
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
++||+|+++.. . +.....+..+.+ +|||||++++..+.
T Consensus 183 ~~fD~Vv~n~~--------~------~~~~~~l~~~~~------------------~LkpgG~lils~~~ 220 (254)
T 2nxc_A 183 GPFDLLVANLY--------A------ELHAALAPRYRE------------------ALVPGGRALLTGIL 220 (254)
T ss_dssp CCEEEEEEECC--------H------HHHHHHHHHHHH------------------HEEEEEEEEEEEEE
T ss_pred CCCCEEEECCc--------H------HHHHHHHHHHHH------------------HcCCCCEEEEEeec
Confidence 68999999642 1 114466777777 99999999997654
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.1e-11 Score=101.16 Aligned_cols=107 Identities=16% Similarity=0.143 Sum_probs=72.1
Q ss_pred CCCEEEEEcccCCh----HHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC---------------------------C-
Q 038391 39 PGSSVLDLGCAPGA----WLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC---------------------------D- 86 (186)
Q Consensus 39 ~~~~vLDlGcG~G~----~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~---------------------------~- 86 (186)
++.+|||+|||+|. ++..+++.++....+.+|+|+|+|+.|++.++. .
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45699999999998 556667765521013589999999999754211 0
Q ss_pred ---------CCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCC
Q 038391 87 ---------ARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPV 157 (186)
Q Consensus 87 ---------~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (186)
.+++|.+.|+.+.+.. ..++||+|+|. ......+. +....++....+
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~-------~~~~fDlI~cr-----nvliyf~~----~~~~~vl~~~~~-------- 240 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYN-------VPGPFDAIFCR-----NVMIYFDK----TTQEDILRRFVP-------- 240 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCC-------CCCCEEEEEEC-----SSGGGSCH----HHHHHHHHHHGG--------
T ss_pred ceeechhhcccCeEEecccCCCCCC-------cCCCeeEEEEC-----CchHhCCH----HHHHHHHHHHHH--------
Confidence 2578888887764221 14689999993 22222222 234677888887
Q ss_pred CCCCCCCCCcccccCcEEEEEE
Q 038391 158 NNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 158 ~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
.|+|||+|++..
T Consensus 241 ----------~L~pgG~L~lg~ 252 (274)
T 1af7_A 241 ----------LLKPDGLLFAGH 252 (274)
T ss_dssp ----------GEEEEEEEEECT
T ss_pred ----------HhCCCcEEEEEe
Confidence 999999999843
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-11 Score=100.20 Aligned_cols=101 Identities=21% Similarity=0.302 Sum_probs=77.7
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC---------CCCCeEEEEeeecCCChhhHhh
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH---------CDARVQTVSADVINLPSNQVRA 106 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~---------~~~~~~~~~~d~~~~~~~~l~~ 106 (186)
.++++.+|||+|||+|.++..+++.+++ +.+|+++|+++.+++.+. ...+++++++|+.+...
T Consensus 96 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~----- 167 (280)
T 1i9g_A 96 DIFPGARVLEAGAGSGALTLSLLRAVGP---AGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL----- 167 (280)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCT---TSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC-----
T ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC-----
Confidence 4688999999999999999999998753 589999999999865411 14578999998876532
Q ss_pred hCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 107 LSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 107 ~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+.++||+|+++.+ . ....+..+.+ +|+|||++++....
T Consensus 168 ---~~~~~D~v~~~~~-------~---------~~~~l~~~~~------------------~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 168 ---PDGSVDRAVLDML-------A---------PWEVLDAVSR------------------LLVAGGVLMVYVAT 205 (280)
T ss_dssp ---CTTCEEEEEEESS-------C---------GGGGHHHHHH------------------HEEEEEEEEEEESS
T ss_pred ---CCCceeEEEECCc-------C---------HHHHHHHHHH------------------hCCCCCEEEEEeCC
Confidence 2468999999653 1 1135666666 99999999998754
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.3e-12 Score=101.77 Aligned_cols=106 Identities=12% Similarity=0.181 Sum_probs=75.5
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
.++.+|||+|||+|..+..+++.+++ +++|+++|+++.++.. .....+++++.+|+.+.... +..-...
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~-l~~~~~~ 144 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPD---DGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDN-LLQGQES 144 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCT---TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHH-HHHSTTC
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHH-HHhccCC
Confidence 46789999999999999999999864 5899999999998644 22334789999987643111 1000001
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
.++||+|++|..+ .. ....++.+.+ +|||||.+++..
T Consensus 145 ~~~fD~I~~d~~~--------~~------~~~~l~~~~~------------------~L~pGG~lv~d~ 181 (237)
T 3c3y_A 145 EGSYDFGFVDADK--------PN------YIKYHERLMK------------------LVKVGGIVAYDN 181 (237)
T ss_dssp TTCEEEEEECSCG--------GG------HHHHHHHHHH------------------HEEEEEEEEEEC
T ss_pred CCCcCEEEECCch--------HH------HHHHHHHHHH------------------hcCCCeEEEEec
Confidence 3689999997521 11 3456677777 999999999853
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.20 E-value=8.9e-12 Score=105.82 Aligned_cols=117 Identities=16% Similarity=0.130 Sum_probs=78.8
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCC-CeEEEEeeecCCChhhHhhhCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDA-RVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~-~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.++.+|||+|||+|.++..+++. +.+|+++|+++.++..+ .... +++++++|+.+.... +..
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~------ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~----~~~ 221 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAA------GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQR----EER 221 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHH----HHH
T ss_pred CCCCcEEEcccccCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHH----HHh
Confidence 46789999999999999999986 45999999999997541 2222 489999988654211 100
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
.+++||+|++|+++...... .......+....++..+.+ +|||||.|++......
T Consensus 222 ~~~~fD~Ii~dPP~~~~~~~-~~~~~~~~~~~~ll~~~~~------------------~LkpgG~lli~~~~~~ 276 (332)
T 2igt_A 222 RGSTYDIILTDPPKFGRGTH-GEVWQLFDHLPLMLDICRE------------------ILSPKALGLVLTAYSI 276 (332)
T ss_dssp HTCCBSEEEECCCSEEECTT-CCEEEHHHHHHHHHHHHHH------------------TBCTTCCEEEEEECCT
T ss_pred cCCCceEEEECCccccCCch-HHHHHHHHHHHHHHHHHHH------------------hcCcCcEEEEEECCCC
Confidence 14689999998753111100 0001112334567777777 9999999888776554
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.20 E-value=7.8e-12 Score=98.81 Aligned_cols=96 Identities=21% Similarity=0.296 Sum_probs=71.2
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEE
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~ 118 (186)
++.+|||+|||+|.++..+++ . +|+|+++.++..+... +++++++|+...+. +.++||+|+
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~--------~--~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~--------~~~~fD~v~ 107 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKI--------K--IGVEPSERMAEIARKR-GVFVLKGTAENLPL--------KDESFDFAL 107 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTC--------C--EEEESCHHHHHHHHHT-TCEEEECBTTBCCS--------CTTCEEEEE
T ss_pred CCCcEEEeCCCCCHHHHHHHH--------H--hccCCCHHHHHHHHhc-CCEEEEcccccCCC--------CCCCeeEEE
Confidence 488999999999999887643 2 9999999997653322 68888888876542 356899999
Q ss_pred eCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 119 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
+... ..+..+ ...++..+.+ +|||||.+++..+..
T Consensus 108 ~~~~----l~~~~~-------~~~~l~~~~~------------------~L~pgG~l~i~~~~~ 142 (219)
T 1vlm_A 108 MVTT----ICFVDD-------PERALKEAYR------------------ILKKGGYLIVGIVDR 142 (219)
T ss_dssp EESC----GGGSSC-------HHHHHHHHHH------------------HEEEEEEEEEEEECS
T ss_pred Ecch----HhhccC-------HHHHHHHHHH------------------HcCCCcEEEEEEeCC
Confidence 9542 112222 3467777777 999999999987754
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=8.8e-12 Score=103.49 Aligned_cols=70 Identities=20% Similarity=0.167 Sum_probs=55.6
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
++.+|||+|||+|.++..++.. + +.+|+|+|+|+.++..+ ....+++++++|+.+.. .
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~----~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~----------~ 187 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-S----DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF----------K 187 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-S----SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG----------G
T ss_pred CCCEEEEEeCchhHHHHHHHHC-C----CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc----------c
Confidence 5679999999999999999998 4 58999999999997541 22335999999986531 1
Q ss_pred CCc---cEEEeCCCC
Q 038391 112 KGF---SVILSDMCP 123 (186)
Q Consensus 112 ~~~---D~V~~d~~~ 123 (186)
++| |+|++|+++
T Consensus 188 ~~f~~~D~IvsnPPy 202 (284)
T 1nv8_A 188 EKFASIEMILSNPPY 202 (284)
T ss_dssp GGTTTCCEEEECCCC
T ss_pred cccCCCCEEEEcCCC
Confidence 367 999999764
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.19 E-value=3.2e-11 Score=104.10 Aligned_cols=116 Identities=22% Similarity=0.284 Sum_probs=81.5
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
+++.+|||+|||+|.++..+++. + ..+|+|+|+++.++.. +....+++++++|+.+... .+...
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~-g----~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~----~~~~~ 286 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIA-G----ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEME----KLQKK 286 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT-T----CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH----HHHHT
T ss_pred hCCCeEEEecCCCCHHHHHHHHC-C----CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHH----HHHhh
Confidence 47899999999999999999986 2 3599999999998754 1222378999998865421 11112
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
+.+||+|++|++... ................+..+.+ +|+|||.|++.....
T Consensus 287 ~~~fD~Vi~dpP~~~--~~~~~~~~~~~~~~~~l~~~~~------------------~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 287 GEKFDIVVLDPPAFV--QHEKDLKAGLRAYFNVNFAGLN------------------LVKDGGILVTCSCSQ 338 (396)
T ss_dssp TCCEEEEEECCCCSC--SSGGGHHHHHHHHHHHHHHHHT------------------TEEEEEEEEEEECCT
T ss_pred CCCCCEEEECCCCCC--CCHHHHHHHHHHHHHHHHHHHH------------------hcCCCcEEEEEECCC
Confidence 468999999875322 1112222333445677777887 999999999887653
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.7e-11 Score=92.96 Aligned_cols=95 Identities=14% Similarity=0.145 Sum_probs=72.0
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC------CCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH------CDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~------~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
+.++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.+. ...+++++++|+.+ .. +
T Consensus 33 ~~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~--------~ 97 (183)
T 2yxd_A 33 LNKDDVVVDVGCGSGGMTVEIAKR------CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VL--------D 97 (183)
T ss_dssp CCTTCEEEEESCCCSHHHHHHHTT------SSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HG--------G
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cc--------c
Confidence 567889999999999999999982 589999999999875421 12578899998765 21 2
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
.++||+|+++.. .+ ....+..+.+ + |||.+++....
T Consensus 98 ~~~~D~i~~~~~--------~~-------~~~~l~~~~~------------------~--~gG~l~~~~~~ 133 (183)
T 2yxd_A 98 KLEFNKAFIGGT--------KN-------IEKIIEILDK------------------K--KINHIVANTIV 133 (183)
T ss_dssp GCCCSEEEECSC--------SC-------HHHHHHHHHH------------------T--TCCEEEEEESC
T ss_pred CCCCcEEEECCc--------cc-------HHHHHHHHhh------------------C--CCCEEEEEecc
Confidence 368999999653 11 4467777775 5 99999998754
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=7.3e-12 Score=104.18 Aligned_cols=99 Identities=16% Similarity=0.146 Sum_probs=76.3
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
.+++|++|||+|||+|.++..++.. +..+|+++|+++.+++. +....+++++++|+.++.
T Consensus 122 ~~~~g~~VlD~~aG~G~~~i~~a~~-----g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-------- 188 (278)
T 3k6r_A 122 VAKPDELVVDMFAGIGHLSLPIAVY-----GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-------- 188 (278)
T ss_dssp HCCTTCEEEETTCTTTTTTHHHHHH-----TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC--------
T ss_pred hcCCCCEEEEecCcCcHHHHHHHHh-----cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc--------
Confidence 3689999999999999999999987 24699999999988543 455678999999987764
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
..+.||.|+.+.++.. ..++..+.+ +||+||++.+..+.
T Consensus 189 -~~~~~D~Vi~~~p~~~---------------~~~l~~a~~------------------~lk~gG~ih~~~~~ 227 (278)
T 3k6r_A 189 -GENIADRILMGYVVRT---------------HEFIPKALS------------------IAKDGAIIHYHNTV 227 (278)
T ss_dssp -CCSCEEEEEECCCSSG---------------GGGHHHHHH------------------HEEEEEEEEEEEEE
T ss_pred -cccCCCEEEECCCCcH---------------HHHHHHHHH------------------HcCCCCEEEEEeee
Confidence 3468999999875322 123444555 89999998776553
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-11 Score=97.58 Aligned_cols=103 Identities=19% Similarity=0.238 Sum_probs=75.0
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
+.++.+|||+|||+|..+..+++.++. +++|+++|+++.++.. .....+++++++|+.+.. ..+..
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~~~ 139 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPA---DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETL----DELLA 139 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCT---TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHH----HHHHH
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHH----HHHHh
Confidence 356789999999999999999998753 5799999999998654 123357999999875431 11110
Q ss_pred CC--CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 110 KQ--KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 110 ~~--~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
.+ ++||+|++|.. . .. ....+..+.+ +|+|||.+++.
T Consensus 140 ~~~~~~~D~v~~d~~------~-~~-------~~~~l~~~~~------------------~L~pgG~lv~~ 178 (229)
T 2avd_A 140 AGEAGTFDVAVVDAD------K-EN-------CSAYYERCLQ------------------LLRPGGILAVL 178 (229)
T ss_dssp TTCTTCEEEEEECSC------S-TT-------HHHHHHHHHH------------------HEEEEEEEEEE
T ss_pred cCCCCCccEEEECCC------H-HH-------HHHHHHHHHH------------------HcCCCeEEEEE
Confidence 11 68999999753 1 11 3356677777 99999999984
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-11 Score=104.74 Aligned_cols=108 Identities=13% Similarity=0.096 Sum_probs=78.4
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCCCCc
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~ 114 (186)
.+|||||||+|..+..+++.++ +.+|++||+++.+++.+ ....+++++.+|+.... ..+ +.++|
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p----~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l----~~~--~~~~f 160 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYP----QSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVA----ESF--TPASR 160 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHST----TCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHH----HTC--CTTCE
T ss_pred CEEEEEECCcCHHHHHHHHHCC----CcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHH----hhc--cCCCC
Confidence 3999999999999999999764 47999999999987541 12468999999986432 111 24689
Q ss_pred cEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 115 SVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 115 D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
|+|++|...+.. ...+.. ...++..+.+ .|||||+|++......
T Consensus 161 DvIi~D~~~~~~---~~~~L~----t~efl~~~~r------------------~LkpgGvlv~~~~~~~ 204 (317)
T 3gjy_A 161 DVIIRDVFAGAI---TPQNFT----TVEFFEHCHR------------------GLAPGGLYVANCGDHS 204 (317)
T ss_dssp EEEEECCSTTSC---CCGGGS----BHHHHHHHHH------------------HEEEEEEEEEEEEECT
T ss_pred CEEEECCCCccc---cchhhh----HHHHHHHHHH------------------hcCCCcEEEEEecCCc
Confidence 999998642221 111100 2467888887 9999999999987543
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.19 E-value=7.4e-11 Score=99.56 Aligned_cols=99 Identities=16% Similarity=0.226 Sum_probs=70.6
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
.++.+|||+|||+|.++..+++. + ..+|+|+|++ .++.. .....+++++++|+.+... +
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~-g----~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------~ 102 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKH-G----AKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHL--------P 102 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-C----CSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCC--------S
T ss_pred cCCCEEEEecCccHHHHHHHHHC-C----CCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccC--------C
Confidence 46789999999999999999886 2 3599999999 46543 2334579999999876542 2
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV 176 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lv 176 (186)
.++||+|+++..... ..+.. ....++....+ +|||||.++
T Consensus 103 ~~~~D~Ivs~~~~~~-l~~~~-------~~~~~l~~~~~------------------~LkpgG~li 142 (328)
T 1g6q_1 103 FPKVDIIISEWMGYF-LLYES-------MMDTVLYARDH------------------YLVEGGLIF 142 (328)
T ss_dssp SSCEEEEEECCCBTT-BSTTC-------CHHHHHHHHHH------------------HEEEEEEEE
T ss_pred CCcccEEEEeCchhh-cccHH-------HHHHHHHHHHh------------------hcCCCeEEE
Confidence 468999999642111 11111 13456666666 999999997
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-11 Score=101.21 Aligned_cols=100 Identities=20% Similarity=0.253 Sum_probs=76.1
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
.++++.+|||+|||+|.++..+++.+++ +.+|+++|+++.+++.+ ....++++..+|+.+..
T Consensus 109 ~~~~~~~VLDiG~G~G~~~~~la~~~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------- 177 (277)
T 1o54_A 109 DVKEGDRIIDTGVGSGAMCAVLARAVGS---SGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF-------- 177 (277)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHTTT---TCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC--------
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCC---CcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcc--------
Confidence 4678899999999999999999998653 58999999999886542 12257888888876541
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+.++||+|+++++. ....+..+.+ .|+|||.|++....
T Consensus 178 -~~~~~D~V~~~~~~----------------~~~~l~~~~~------------------~L~pgG~l~~~~~~ 215 (277)
T 1o54_A 178 -DEKDVDALFLDVPD----------------PWNYIDKCWE------------------ALKGGGRFATVCPT 215 (277)
T ss_dssp -SCCSEEEEEECCSC----------------GGGTHHHHHH------------------HEEEEEEEEEEESS
T ss_pred -cCCccCEEEECCcC----------------HHHHHHHHHH------------------HcCCCCEEEEEeCC
Confidence 34689999997631 1135556666 89999999997753
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.3e-11 Score=102.83 Aligned_cols=97 Identities=20% Similarity=0.257 Sum_probs=69.1
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
+|++|||+|||+|.++..+++. + ..+|+|||.++ ++.. +....+++++++++.++.. .
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~a-G----A~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~l---------p 147 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQA-G----ARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVEL---------P 147 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-T----CSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCC---------S
T ss_pred CCCEEEEeCCCccHHHHHHHHh-C----CCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecC---------C
Confidence 6889999999999888777765 2 36899999996 5322 4556789999999877642 4
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEE
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV 176 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lv 176 (186)
++||+|++...- ....+. .+...++....+ +|||||.++
T Consensus 148 e~~DvivsE~~~-~~l~~e-------~~l~~~l~a~~r------------------~Lkp~G~~i 186 (376)
T 4hc4_A 148 EQVDAIVSEWMG-YGLLHE-------SMLSSVLHARTK------------------WLKEGGLLL 186 (376)
T ss_dssp SCEEEEECCCCB-TTBTTT-------CSHHHHHHHHHH------------------HEEEEEEEE
T ss_pred ccccEEEeeccc-cccccc-------chhhhHHHHHHh------------------hCCCCceEC
Confidence 689999995420 111111 124456666666 999999987
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.3e-10 Score=97.91 Aligned_cols=110 Identities=13% Similarity=0.177 Sum_probs=81.0
Q ss_pred HHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 30 IQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 30 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
+...+..+++..+|||+|||+|.++..+++.++ +.+++++|+ +.+++.+....+++++.+|+.+ +.
T Consensus 194 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~-------- 259 (368)
T 3reo_A 194 ILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYP----SINAINFDL-PHVIQDAPAFSGVEHLGGDMFD-GV-------- 259 (368)
T ss_dssp HHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT-CC--------
T ss_pred HHHhcccccCCCEEEEeCCCcCHHHHHHHHhCC----CCEEEEEeh-HHHHHhhhhcCCCEEEecCCCC-CC--------
Confidence 334444356678999999999999999999975 479999999 8887776666789999999875 21
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
+. . |+|++.. ..|.... +.....++++.+ .|||||+|+|..+..
T Consensus 260 p~-~-D~v~~~~-----vlh~~~~----~~~~~~l~~~~~------------------~L~pgG~l~i~e~~~ 303 (368)
T 3reo_A 260 PK-G-DAIFIKW-----ICHDWSD----EHCLKLLKNCYA------------------ALPDHGKVIVAEYIL 303 (368)
T ss_dssp CC-C-SEEEEES-----CGGGBCH----HHHHHHHHHHHH------------------HSCTTCEEEEEECCC
T ss_pred CC-C-CEEEEec-----hhhcCCH----HHHHHHHHHHHH------------------HcCCCCEEEEEEecc
Confidence 22 2 9998843 2333321 224567777777 999999999876543
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=8.8e-12 Score=104.05 Aligned_cols=107 Identities=17% Similarity=0.152 Sum_probs=73.9
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----------CCCCCeEEEEeeecCCChhhHhhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----------HCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----------~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
+.+.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.+ ....+++++.+|+......
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~----~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~----- 159 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDS----VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK----- 159 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTT----CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG-----
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCC----CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh-----
Confidence 4568999999999999999998753 47999999999886531 1146899999987643211
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
..++||+|++|.+.+..+. ... .....++..+.+ .|||||+|++..
T Consensus 160 --~~~~fD~Ii~d~~~~~~~~--~~~----l~~~~~l~~~~~------------------~LkpgG~lv~~~ 205 (296)
T 1inl_A 160 --FKNEFDVIIIDSTDPTAGQ--GGH----LFTEEFYQACYD------------------ALKEDGVFSAET 205 (296)
T ss_dssp --CSSCEEEEEEEC----------------CCSHHHHHHHHH------------------HEEEEEEEEEEC
T ss_pred --CCCCceEEEEcCCCcccCc--hhh----hhHHHHHHHHHH------------------hcCCCcEEEEEc
Confidence 2468999999864320110 000 012467777777 999999999974
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.15 E-value=6.8e-12 Score=103.25 Aligned_cols=110 Identities=23% Similarity=0.335 Sum_probs=68.3
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC----C----------------C----------
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC----D----------------A---------- 87 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~----~----------------~---------- 87 (186)
.++.+|||+|||+|.....++... +.+|+|+|+|+.|++.+.. . .
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 144 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACSH-----FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKE 144 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGG-----CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhccC-----CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhH
Confidence 367899999999999554444432 4699999999999753110 0 0
Q ss_pred ------CeEEEEeeecC-CChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCC
Q 038391 88 ------RVQTVSADVIN-LPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNS 160 (186)
Q Consensus 88 ------~~~~~~~d~~~-~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (186)
.+.++++|+.+ .+.. ....+.++||+|++... .+.... .......++.++.+
T Consensus 145 ~~~~~~~~~~~~~D~~~~~~~~---~~~~~~~~fD~V~~~~~-----l~~~~~--~~~~~~~~l~~~~r----------- 203 (289)
T 2g72_A 145 RQLRARVKRVLPIDVHQPQPLG---AGSPAPLPADALVSAFC-----LEAVSP--DLASFQRALDHITT----------- 203 (289)
T ss_dssp HHHHHHEEEEECCCTTSSSTTC---SSCSSCSSEEEEEEESC-----HHHHCS--SHHHHHHHHHHHHT-----------
T ss_pred HHHHhhhceEEecccCCCCCcc---ccccCCCCCCEEEehhh-----hhhhcC--CHHHHHHHHHHHHH-----------
Confidence 13455567765 3211 00013467999999542 111000 01235678888888
Q ss_pred CCCCCCcccccCcEEEEEEc
Q 038391 161 DSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 161 ~~~~~~~~LkpgG~lvi~~~ 180 (186)
+|||||+|++...
T Consensus 204 -------~LkpGG~l~~~~~ 216 (289)
T 2g72_A 204 -------LLRPGGHLLLIGA 216 (289)
T ss_dssp -------TEEEEEEEEEEEE
T ss_pred -------hcCCCCEEEEEEe
Confidence 9999999998743
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.15 E-value=7e-12 Score=101.23 Aligned_cols=79 Identities=10% Similarity=0.074 Sum_probs=57.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCC-
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPK- 110 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~- 110 (186)
++.+|||+|||+|.++..+++..+ +.+|+|+|+++.++.. .....+++++++|+.+..... +...
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~~~~ 137 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLN----GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDA---LKEES 137 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH----CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTT---STTCC
T ss_pred CCCEEEEeCCChhHHHHHHHHhCC----CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhh---hhccc
Confidence 577999999999999999998763 4799999999999754 123346999999876521110 1001
Q ss_pred CCCccEEEeCCCCC
Q 038391 111 QKGFSVILSDMCPS 124 (186)
Q Consensus 111 ~~~~D~V~~d~~~~ 124 (186)
.++||+|++|++..
T Consensus 138 ~~~fD~i~~npp~~ 151 (254)
T 2h00_A 138 EIIYDFCMCNPPFF 151 (254)
T ss_dssp SCCBSEEEECCCCC
T ss_pred CCcccEEEECCCCc
Confidence 25899999987643
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.9e-11 Score=103.88 Aligned_cols=114 Identities=21% Similarity=0.243 Sum_probs=78.8
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------------cCCCCCeEEEEeeecCCChhhH
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------------LHCDARVQTVSADVINLPSNQV 104 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------------~~~~~~~~~~~~d~~~~~~~~l 104 (186)
.++|.+|||+|||+|+.|.++++.+. ++.|+++|+++.++.. .....++.+...|...+...
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~----~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~-- 219 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGC----CRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGEL-- 219 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTC----EEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHH--
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcC----CCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchh--
Confidence 68899999999999999999999754 4689999999987532 11224567777776543221
Q ss_pred hhhCCCCCCccEEEeCCCCCCCCC--ccc--------chHH---HHHHHHHHHHHHcCCcccCCCCCCCCCCCCCccccc
Q 038391 105 RALSPKQKGFSVILSDMCPSVSGI--TTK--------DAAL---SVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKP 171 (186)
Q Consensus 105 ~~~~~~~~~~D~V~~d~~~~~~~~--~~~--------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lkp 171 (186)
..+.||.|++|++|+..|. ... .... ...+....+..+.+ +|||
T Consensus 220 -----~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~------------------~lkp 276 (359)
T 4fzv_A 220 -----EGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLL------------------ATKP 276 (359)
T ss_dssp -----STTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHH------------------TEEE
T ss_pred -----ccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHh------------------cCCC
Confidence 3578999999999987522 111 1111 12234456666666 9999
Q ss_pred CcEEEEEE
Q 038391 172 GGHLVIKL 179 (186)
Q Consensus 172 gG~lvi~~ 179 (186)
||+||=.+
T Consensus 277 GG~LVYsT 284 (359)
T 4fzv_A 277 GGHVVYST 284 (359)
T ss_dssp EEEEEEEE
T ss_pred CcEEEEEe
Confidence 99999554
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.4e-11 Score=104.54 Aligned_cols=114 Identities=18% Similarity=0.168 Sum_probs=80.7
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
++.+|||+|||+|.++..+++. ..+|+|+|+++.++..+ +...+++++++|+.+... .+...+.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~------~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~----~~~~~~~ 278 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG------FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLR----RLEKEGE 278 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH------EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHH----HHHHTTC
T ss_pred CCCeEEEeeeccCHHHHHHHHh------CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHH----HHHhcCC
Confidence 7789999999999999999997 37999999999997541 122348999998865421 1111246
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
+||+|++|++.... ...............+..+.+ +|+|||+|++.....
T Consensus 279 ~fD~Ii~dpP~~~~--~~~~~~~~~~~~~~~l~~~~~------------------~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 279 RFDLVVLDPPAFAK--GKKDVERAYRAYKEVNLRAIK------------------LLKEGGILATASCSH 328 (382)
T ss_dssp CEEEEEECCCCSCC--STTSHHHHHHHHHHHHHHHHH------------------TEEEEEEEEEEECCT
T ss_pred CeeEEEECCCCCCC--ChhHHHHHHHHHHHHHHHHHH------------------hcCCCCEEEEEECCC
Confidence 89999999763221 112223333445567777777 999999999987653
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=7.3e-10 Score=94.69 Aligned_cols=111 Identities=14% Similarity=0.122 Sum_probs=82.2
Q ss_pred HHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhC
Q 038391 29 QIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 29 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
.+...+..+++..+|||+|||+|.++..+++.++ +.+++++|+ +.++..+....+++++.+|+.+ +.
T Consensus 191 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~------- 257 (364)
T 3p9c_A 191 KLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYP----TIKGVNFDL-PHVISEAPQFPGVTHVGGDMFK-EV------- 257 (364)
T ss_dssp HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT-CC-------
T ss_pred HHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCC----CCeEEEecC-HHHHHhhhhcCCeEEEeCCcCC-CC-------
Confidence 3455554466788999999999999999999975 479999999 7787776666789999999875 21
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
+. . |+|++.. ..|.... +.....+..+.+ .|||||+|+|..+.-
T Consensus 258 -p~-~-D~v~~~~-----vlh~~~d----~~~~~~L~~~~~------------------~L~pgG~l~i~e~~~ 301 (364)
T 3p9c_A 258 -PS-G-DTILMKW-----ILHDWSD----QHCATLLKNCYD------------------ALPAHGKVVLVQCIL 301 (364)
T ss_dssp -CC-C-SEEEEES-----CGGGSCH----HHHHHHHHHHHH------------------HSCTTCEEEEEECCB
T ss_pred -CC-C-CEEEehH-----HhccCCH----HHHHHHHHHHHH------------------HcCCCCEEEEEEecc
Confidence 22 2 9999843 2333321 224567777777 999999999876543
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=7.7e-12 Score=108.11 Aligned_cols=106 Identities=12% Similarity=0.143 Sum_probs=72.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
++++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+... .+......+ .......+..++++||+
T Consensus 105 ~~~~~~VLDiGcG~G~~~~~l~~~------g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~---~~~~~~~l~~~~~~fD~ 174 (416)
T 4e2x_A 105 TGPDPFIVEIGCNDGIMLRTIQEA------GVRHLGFEPSSGVAAKAREK-GIRVRTDFF---EKATADDVRRTEGPANV 174 (416)
T ss_dssp CSSSCEEEEETCTTTTTHHHHHHT------TCEEEEECCCHHHHHHHHTT-TCCEECSCC---SHHHHHHHHHHHCCEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHc------CCcEEEECCCHHHHHHHHHc-CCCcceeee---chhhHhhcccCCCCEEE
Confidence 567889999999999999999986 57999999999987653322 222222111 11122222213579999
Q ss_pred EEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 117 V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
|++... ..|..+ ...++..+.+ +|||||+|++...+
T Consensus 175 I~~~~v----l~h~~d-------~~~~l~~~~r------------------~LkpgG~l~i~~~~ 210 (416)
T 4e2x_A 175 IYAANT----LCHIPY-------VQSVLEGVDA------------------LLAPDGVFVFEDPY 210 (416)
T ss_dssp EEEESC----GGGCTT-------HHHHHHHHHH------------------HEEEEEEEEEEEEC
T ss_pred EEECCh----HHhcCC-------HHHHHHHHHH------------------HcCCCeEEEEEeCC
Confidence 999532 222222 5678888888 99999999998653
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-11 Score=98.26 Aligned_cols=108 Identities=16% Similarity=0.184 Sum_probs=74.7
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhh---
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRA--- 106 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~--- 106 (186)
+.++.+|||+|||+|..+..+++.++. +++|+++|+++.++..+ ....+++++++|+..........
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~ 134 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPE---DGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSA 134 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCT---TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSC
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccc
Confidence 356889999999999999999999753 57999999999886541 22245889998875421110000
Q ss_pred --h--CCC-C-CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 107 --L--SPK-Q-KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 107 --~--~~~-~-~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
| ..+ + ++||+|+++.. ... ....+..+.+ +|||||+|++..
T Consensus 135 ~~~~~~f~~~~~~fD~I~~~~~--------~~~------~~~~l~~~~~------------------~L~pgG~lv~~~ 181 (239)
T 2hnk_A 135 PSWASDFAFGPSSIDLFFLDAD--------KEN------YPNYYPLILK------------------LLKPGGLLIADN 181 (239)
T ss_dssp CGGGTTTCCSTTCEEEEEECSC--------GGG------HHHHHHHHHH------------------HEEEEEEEEEEC
T ss_pred ccccccccCCCCCcCEEEEeCC--------HHH------HHHHHHHHHH------------------HcCCCeEEEEEc
Confidence 0 001 2 68999999632 111 3356677777 999999999965
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-11 Score=102.37 Aligned_cols=107 Identities=16% Similarity=0.086 Sum_probs=76.0
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----------CCCCCeEEEEeeecCCChhhHhhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----------HCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----------~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
+.+.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.+ ....+++++.+|+... +..
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~----~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~----l~~- 144 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPS----VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH----IAK- 144 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTT----CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH----HHT-
T ss_pred CCCCEEEEECCchHHHHHHHHhCCC----CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH----Hhh-
Confidence 3568999999999999999998743 47999999999986541 1246899999987642 111
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
..++||+|++|...+........ ...++..+.+ .|||||.|++..-
T Consensus 145 --~~~~fD~Ii~d~~~~~~~~~~l~-------~~~~~~~~~~------------------~L~pgG~lv~~~~ 190 (275)
T 1iy9_A 145 --SENQYDVIMVDSTEPVGPAVNLF-------TKGFYAGIAK------------------ALKEDGIFVAQTD 190 (275)
T ss_dssp --CCSCEEEEEESCSSCCSCCCCCS-------TTHHHHHHHH------------------HEEEEEEEEEECC
T ss_pred --CCCCeeEEEECCCCCCCcchhhh-------HHHHHHHHHH------------------hcCCCcEEEEEcC
Confidence 24689999998753221100000 2356777777 9999999999853
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.8e-11 Score=96.25 Aligned_cols=104 Identities=13% Similarity=0.065 Sum_probs=76.9
Q ss_pred CCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhh
Q 038391 35 KLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
..++++.+|||+|||+|.++..+++..+ ..+|+|+|+++.++.. +....++++.++|..+...
T Consensus 17 ~~v~~g~~VlDIGtGsG~l~i~la~~~~----~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~------ 86 (230)
T 3lec_A 17 NYVPKGARLLDVGSDHAYLPIFLLQMGY----CDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFE------ 86 (230)
T ss_dssp TTSCTTEEEEEETCSTTHHHHHHHHTTC----EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC------
T ss_pred HhCCCCCEEEEECCchHHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccc------
Confidence 3467899999999999999999999732 3689999999998654 3445679999999876432
Q ss_pred CCCCCCccEEE-eCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 108 SPKQKGFSVIL-SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 108 ~~~~~~~D~V~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
++.+||+|+ ++|. .++....+..... .|+++|+||++-..+
T Consensus 87 --~~~~~D~IviaGmG--------------g~lI~~IL~~~~~------------------~l~~~~~lIlqp~~~ 128 (230)
T 3lec_A 87 --EADNIDTITICGMG--------------GRLIADILNNDID------------------KLQHVKTLVLQPNNR 128 (230)
T ss_dssp --GGGCCCEEEEEEEC--------------HHHHHHHHHHTGG------------------GGTTCCEEEEEESSC
T ss_pred --cccccCEEEEeCCc--------------hHHHHHHHHHHHH------------------HhCcCCEEEEECCCC
Confidence 123799876 4331 1224456666666 899999999987554
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-10 Score=98.02 Aligned_cols=113 Identities=17% Similarity=0.229 Sum_probs=79.6
Q ss_pred HHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCCh
Q 038391 29 QIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPS 101 (186)
Q Consensus 29 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~ 101 (186)
++...+...+.+.+|||+|||+|.++..+++.++ +.+++++|+ +.++.. .....+++++.+|+.+...
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 243 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHP----QLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARN 243 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCT----TCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGG
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCC----CCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcc
Confidence 4445544323378999999999999999999875 489999999 777543 1233579999999876531
Q ss_pred hhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 102 NQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 102 ~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
. ..++||+|++.. ..+.... +.....+..+.+ .|||||+|+|...
T Consensus 244 ~-------~~~~~D~v~~~~-----vlh~~~~----~~~~~~l~~~~~------------------~L~pgG~l~i~e~ 288 (352)
T 3mcz_A 244 F-------EGGAADVVMLND-----CLHYFDA----REAREVIGHAAG------------------LVKPGGALLILTM 288 (352)
T ss_dssp G-------TTCCEEEEEEES-----CGGGSCH----HHHHHHHHHHHH------------------TEEEEEEEEEEEE
T ss_pred c-------CCCCccEEEEec-----ccccCCH----HHHHHHHHHHHH------------------HcCCCCEEEEEEe
Confidence 0 135699999843 2332221 224567777777 9999999998764
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-11 Score=103.38 Aligned_cols=109 Identities=20% Similarity=0.188 Sum_probs=76.8
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----------CCCCCeEEEEeeecCCChhhHhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----------HCDARVQTVSADVINLPSNQVRA 106 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----------~~~~~~~~~~~d~~~~~~~~l~~ 106 (186)
+++.+|||+|||+|..+..++++.+ ..+|+++|+++.+++.+ ....+++++.+|+.+... .
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~----~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~----~ 147 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPT----VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLE----R 147 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTT----CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHH----H
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCC----CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHH----h
Confidence 4568999999999999999998753 47999999999886531 114689999998864311 1
Q ss_pred hCCCCCCccEEEeCCCCCCCCCcccchHHHHHH-HHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 107 LSPKQKGFSVILSDMCPSVSGITTKDAALSVEL-GMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 107 ~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
..++||+|++|...+.. ..... ..+ ...++..+.+ .|||||.|++...
T Consensus 148 ---~~~~fD~Ii~d~~~~~~-~~~~~----~~l~~~~~l~~~~~------------------~LkpgG~lv~~~~ 196 (314)
T 1uir_A 148 ---TEERYDVVIIDLTDPVG-EDNPA----RLLYTVEFYRLVKA------------------HLNPGGVMGMQTG 196 (314)
T ss_dssp ---CCCCEEEEEEECCCCBS-TTCGG----GGGSSHHHHHHHHH------------------TEEEEEEEEEEEE
T ss_pred ---cCCCccEEEECCCCccc-ccCcc----hhccHHHHHHHHHH------------------hcCCCcEEEEEcc
Confidence 25689999998753220 00100 001 2467777787 9999999999853
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=5.9e-11 Score=95.90 Aligned_cols=104 Identities=18% Similarity=0.145 Sum_probs=75.5
Q ss_pred CCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhh
Q 038391 35 KLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
..++++.+|||+|||+|.++..+++..+ ..+|+++|+++.++.. +....++++.++|..+.-.
T Consensus 11 ~~v~~g~~VlDIGtGsG~l~i~la~~~~----~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~------ 80 (225)
T 3kr9_A 11 SFVSQGAILLDVGSDHAYLPIELVERGQ----IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFE------ 80 (225)
T ss_dssp TTSCTTEEEEEETCSTTHHHHHHHHTTS----EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC------
T ss_pred HhCCCCCEEEEeCCCcHHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcc------
Confidence 3467899999999999999999999743 3689999999998654 2344579999999754221
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
++.+||+|+.. |.. .+.....+..+.. .|+++|+||++-..
T Consensus 81 --~~~~~D~Ivia------G~G-------g~~i~~Il~~~~~------------------~L~~~~~lVlq~~~ 121 (225)
T 3kr9_A 81 --ETDQVSVITIA------GMG-------GRLIARILEEGLG------------------KLANVERLILQPNN 121 (225)
T ss_dssp --GGGCCCEEEEE------EEC-------HHHHHHHHHHTGG------------------GCTTCCEEEEEESS
T ss_pred --cCcCCCEEEEc------CCC-------hHHHHHHHHHHHH------------------HhCCCCEEEEECCC
Confidence 12369988751 111 1224466777776 89999999998654
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3e-11 Score=96.62 Aligned_cols=100 Identities=19% Similarity=0.200 Sum_probs=71.6
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.++++.+|||+|||+|.++..+++..+ .+|+++|+++.++..+ ....++++..+|+... ..
T Consensus 88 ~~~~~~~vLdiG~G~G~~~~~la~~~~-----~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~------- 154 (235)
T 1jg1_A 88 NLKPGMNILEVGTGSGWNAALISEIVK-----TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKG-FP------- 154 (235)
T ss_dssp TCCTTCCEEEECCTTSHHHHHHHHHHC-----SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC-CG-------
T ss_pred CCCCCCEEEEEeCCcCHHHHHHHHHhC-----CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccC-CC-------
Confidence 367889999999999999999999852 6899999999886542 1224588888887322 11
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
...+||+|+++... .... ..+.+ .|||||++++.+-...
T Consensus 155 ~~~~fD~Ii~~~~~-----~~~~------------~~~~~------------------~L~pgG~lvi~~~~~~ 193 (235)
T 1jg1_A 155 PKAPYDVIIVTAGA-----PKIP------------EPLIE------------------QLKIGGKLIIPVGSYH 193 (235)
T ss_dssp GGCCEEEEEECSBB-----SSCC------------HHHHH------------------TEEEEEEEEEEECSSS
T ss_pred CCCCccEEEECCcH-----HHHH------------HHHHH------------------hcCCCcEEEEEEecCC
Confidence 12469999996431 1111 13344 8999999999887653
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=95.30 Aligned_cols=104 Identities=11% Similarity=0.070 Sum_probs=76.5
Q ss_pred CCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhh
Q 038391 35 KLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
..++++.+|||+|||+|.++..+++..+ ..+|+|+|+++.++.. +....++++.++|..+...+
T Consensus 17 ~~v~~g~~VlDIGtGsG~l~i~la~~~~----~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~----- 87 (244)
T 3gnl_A 17 SYITKNERIADIGSDHAYLPCFAVKNQT----ASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK----- 87 (244)
T ss_dssp TTCCSSEEEEEETCSTTHHHHHHHHTTS----EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-----
T ss_pred HhCCCCCEEEEECCccHHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc-----
Confidence 4468899999999999999999999732 3689999999998654 23445799999997654321
Q ss_pred CCCCCCccEEEe-CCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 108 SPKQKGFSVILS-DMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 108 ~~~~~~~D~V~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
+.+||+|+. +|. .++....+..... .|+++|+||++-..+
T Consensus 88 ---~~~~D~IviagmG--------------g~lI~~IL~~~~~------------------~L~~~~~lIlq~~~~ 128 (244)
T 3gnl_A 88 ---KDAIDTIVIAGMG--------------GTLIRTILEEGAA------------------KLAGVTKLILQPNIA 128 (244)
T ss_dssp ---GGCCCEEEEEEEC--------------HHHHHHHHHHTGG------------------GGTTCCEEEEEESSC
T ss_pred ---cccccEEEEeCCc--------------hHHHHHHHHHHHH------------------HhCCCCEEEEEcCCC
Confidence 236998764 221 1224466666776 899999999987544
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.1e-10 Score=94.79 Aligned_cols=113 Identities=12% Similarity=0.133 Sum_probs=80.0
Q ss_pred HHHHHcCC-CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCC
Q 038391 29 QIQKQYKL-IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLP 100 (186)
Q Consensus 29 ~~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~ 100 (186)
.+...+.. .+++.+|||+|||+|.++..+++.++ +.+++++|++ .+++.+ ....+++++.+|+.+.+
T Consensus 154 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 228 (335)
T 2r3s_A 154 LIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNP----NAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVD 228 (335)
T ss_dssp HHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCT----TCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSC
T ss_pred HHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCC----CCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCC
Confidence 44444442 26778999999999999999999874 4799999999 886542 22347999999987643
Q ss_pred hhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 101 SNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 101 ~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
. ...||+|++... .+.... ......+..+.+ .|||||+++|..+
T Consensus 229 ~---------~~~~D~v~~~~~-----l~~~~~----~~~~~~l~~~~~------------------~L~pgG~l~i~e~ 272 (335)
T 2r3s_A 229 Y---------GNDYDLVLLPNF-----LHHFDV----ATCEQLLRKIKT------------------ALAVEGKVIVFDF 272 (335)
T ss_dssp C---------CSCEEEEEEESC-----GGGSCH----HHHHHHHHHHHH------------------HEEEEEEEEEEEC
T ss_pred C---------CCCCcEEEEcch-----hccCCH----HHHHHHHHHHHH------------------hCCCCcEEEEEee
Confidence 2 235999998432 222211 224567777777 9999999988766
Q ss_pred cC
Q 038391 181 ES 182 (186)
Q Consensus 181 ~~ 182 (186)
..
T Consensus 273 ~~ 274 (335)
T 2r3s_A 273 IP 274 (335)
T ss_dssp CC
T ss_pred cC
Confidence 44
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.5e-11 Score=96.46 Aligned_cols=102 Identities=20% Similarity=0.290 Sum_probs=74.5
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
.++.+|||+|||+|..+..+++.++. +++|+++|+++.++..+ ....+++++.+|+.+. +..+...
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----l~~l~~~ 143 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPP---DGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALAT----LEQLTQG 143 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCT---TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH----HHHHHTS
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHhc
Confidence 46779999999999999999998754 57999999999886542 2234688998887532 2222212
Q ss_pred C--CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 111 Q--KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 111 ~--~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
+ ++||+|+++.. .. .....+..+.+ +|||||++++.
T Consensus 144 ~~~~~fD~V~~d~~--------~~------~~~~~l~~~~~------------------~LkpgG~lv~~ 181 (232)
T 3cbg_A 144 KPLPEFDLIFIDAD--------KR------NYPRYYEIGLN------------------LLRRGGLMVID 181 (232)
T ss_dssp SSCCCEEEEEECSC--------GG------GHHHHHHHHHH------------------TEEEEEEEEEE
T ss_pred CCCCCcCEEEECCC--------HH------HHHHHHHHHHH------------------HcCCCeEEEEe
Confidence 2 68999999752 11 13456777777 99999999985
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.9e-11 Score=102.18 Aligned_cols=107 Identities=19% Similarity=0.256 Sum_probs=75.6
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----C------CCCCeEEEEeeecCCChhhHhhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----H------CDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----~------~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
+++.+|||+|||+|.++..+++..+ ..+|+++|+++.+++.+ . ...+++++++|+.+....
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~----~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~----- 185 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKS----VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN----- 185 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTT----CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH-----
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCC----CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhh-----
Confidence 4568999999999999999998643 47999999999886431 1 146799999987643111
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
..++||+|++|...+. +. ... .....++..+.+ .|||||.+++..-
T Consensus 186 --~~~~fDvIi~d~~~p~-~~--~~~----l~~~~~l~~~~~------------------~LkpgG~lv~~~~ 231 (321)
T 2pt6_A 186 --VTNTYDVIIVDSSDPI-GP--AET----LFNQNFYEKIYN------------------ALKPNGYCVAQCE 231 (321)
T ss_dssp --CCSCEEEEEEECCCSS-SG--GGG----GSSHHHHHHHHH------------------HEEEEEEEEEEEC
T ss_pred --cCCCceEEEECCcCCC-Cc--chh----hhHHHHHHHHHH------------------hcCCCcEEEEEcC
Confidence 2468999999864211 11 000 001467777777 9999999999753
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-11 Score=103.97 Aligned_cols=106 Identities=17% Similarity=0.162 Sum_probs=74.8
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----------CCCCCeEEEEeeecCCChhhHhhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----------HCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----------~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
+++.+|||+|||+|.++..+++..+ ..+|+++|+++.+++.+ ....+++++.+|+.+.... .
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~----~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~----~ 165 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGT----VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQ----T 165 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTT----CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHS----S
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCC----CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHh----c
Confidence 5678999999999999999998642 47999999999886541 1246799999987643210 0
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHH-HHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVEL-GMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
..++||+|++|...+.. . ...+ ...++..+.+ .|||||+|++..
T Consensus 166 --~~~~fDvIi~d~~~~~~----~----~~~l~~~~~l~~~~~------------------~LkpgG~lv~~~ 210 (304)
T 3bwc_A 166 --PDNTYDVVIIDTTDPAG----P----ASKLFGEAFYKDVLR------------------ILKPDGICCNQG 210 (304)
T ss_dssp --CTTCEEEEEEECC-----------------CCHHHHHHHHH------------------HEEEEEEEEEEE
T ss_pred --cCCceeEEEECCCCccc----c----chhhhHHHHHHHHHH------------------hcCCCcEEEEec
Confidence 25689999998642111 0 0011 1467778887 999999999974
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2e-11 Score=101.04 Aligned_cols=103 Identities=17% Similarity=0.215 Sum_probs=74.0
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc--------C--------CCCCeEEEEeeecCCCh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL--------H--------CDARVQTVSADVINLPS 101 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~--------~--------~~~~~~~~~~d~~~~~~ 101 (186)
+++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+ . ...+++++.+|+.+.
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~----~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~-- 146 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-D----VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEF-- 146 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-C----CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHH--
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-C----CCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHH--
Confidence 45789999999999999999987 4 47999999999886431 1 246789999887532
Q ss_pred hhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHH-HHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 102 NQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVEL-GMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 102 ~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
+.. .++||+|++|.+.+... . ..+ ...++..+.+ .|+|||.+++..
T Consensus 147 --l~~----~~~fD~Ii~d~~~~~~~---~-----~~l~~~~~l~~~~~------------------~L~pgG~lv~~~ 193 (281)
T 1mjf_A 147 --IKN----NRGFDVIIADSTDPVGP---A-----KVLFSEEFYRYVYD------------------ALNNPGIYVTQA 193 (281)
T ss_dssp --HHH----CCCEEEEEEECCCCC-------------TTSHHHHHHHHH------------------HEEEEEEEEEEE
T ss_pred --hcc----cCCeeEEEECCCCCCCc---c-----hhhhHHHHHHHHHH------------------hcCCCcEEEEEc
Confidence 111 35899999987532110 0 111 2467777777 999999999974
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.11 E-value=8.1e-11 Score=97.11 Aligned_cols=113 Identities=21% Similarity=0.137 Sum_probs=77.5
Q ss_pred CCCEEEEEcccC---ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----CCCCCeEEEEeeecCCChh----hHhhh
Q 038391 39 PGSSVLDLGCAP---GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----HCDARVQTVSADVINLPSN----QVRAL 107 (186)
Q Consensus 39 ~~~~vLDlGcG~---G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----~~~~~~~~~~~d~~~~~~~----~l~~~ 107 (186)
...+|||+|||+ |.++..+.+..+ +.+|+++|+|+.|++.+ ....+++++++|+.+.... .+.+.
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p----~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 152 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNP----DARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRM 152 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCT----TCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCC----CCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhcc
Confidence 347999999999 988877766643 58999999999997652 2235799999998754210 00111
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
. +-.+||+|++... .+..... .....+.++.+ .|||||+|+|..+..+
T Consensus 153 ~-d~~~~d~v~~~~v-----lh~~~d~----~~~~~l~~~~~------------------~L~pGG~l~i~~~~~~ 200 (274)
T 2qe6_A 153 I-DFSRPAAIMLVGM-----LHYLSPD----VVDRVVGAYRD------------------ALAPGSYLFMTSLVDT 200 (274)
T ss_dssp C-CTTSCCEEEETTT-----GGGSCTT----THHHHHHHHHH------------------HSCTTCEEEEEEEBCS
T ss_pred C-CCCCCEEEEEech-----hhhCCcH----HHHHHHHHHHH------------------hCCCCcEEEEEEecCc
Confidence 1 2248999998542 2222110 14467777777 9999999999988753
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.9e-10 Score=100.97 Aligned_cols=105 Identities=18% Similarity=0.153 Sum_probs=72.8
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc--------------CC-CCCeEEEEeeecCCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL--------------HC-DARVQTVSADVINLP 100 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~--------------~~-~~~~~~~~~d~~~~~ 100 (186)
.++++.+|||+|||+|..+..+++..+ ..+|+|||+++.++..+ .. ..+++++++|.....
T Consensus 239 ~l~~g~~VLDLGCGsG~la~~LA~~~g----~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~ 314 (433)
T 1u2z_A 239 QLKKGDTFMDLGSGVGNCVVQAALECG----CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDN 314 (433)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHC----CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTC
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccc
Confidence 367889999999999999999999874 26899999999875422 11 257888887643221
Q ss_pred hhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 101 SNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 101 ~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
.. +.. ...+||+|+++.. .+..+ ....+.++.+ .|||||.|++.
T Consensus 315 ~~-~~~---~~~~FDvIvvn~~-----l~~~d-------~~~~L~el~r------------------~LKpGG~lVi~ 358 (433)
T 1u2z_A 315 NR-VAE---LIPQCDVILVNNF-----LFDED-------LNKKVEKILQ------------------TAKVGCKIISL 358 (433)
T ss_dssp HH-HHH---HGGGCSEEEECCT-----TCCHH-------HHHHHHHHHT------------------TCCTTCEEEES
T ss_pred cc-ccc---ccCCCCEEEEeCc-----ccccc-------HHHHHHHHHH------------------hCCCCeEEEEe
Confidence 11 100 1258999998532 11111 3345677777 99999999986
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=3e-11 Score=100.16 Aligned_cols=106 Identities=19% Similarity=0.250 Sum_probs=75.8
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----C-----CCCCeEEEEeeecCCChhhHhhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----H-----CDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~-----~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
+++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.+ . ...+++++.+|+.+....
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~----~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~----- 147 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKS----VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN----- 147 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT----CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH-----
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCC----CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHh-----
Confidence 4578999999999999999997642 47999999999886431 1 146899999987643211
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
..++||+|++|...+....... ....++..+.+ .|||||.|++..
T Consensus 148 --~~~~fD~Ii~d~~~~~~~~~~l-------~~~~~l~~~~~------------------~L~pgG~lv~~~ 192 (283)
T 2i7c_A 148 --VTNTYDVIIVDSSDPIGPAETL-------FNQNFYEKIYN------------------ALKPNGYCVAQC 192 (283)
T ss_dssp --CCSCEEEEEEECCCTTTGGGGG-------SSHHHHHHHHH------------------HEEEEEEEEEEC
T ss_pred --CCCCceEEEEcCCCCCCcchhh-------hHHHHHHHHHH------------------hcCCCcEEEEEC
Confidence 2468999999864221110000 01467778887 999999999984
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-10 Score=92.72 Aligned_cols=98 Identities=16% Similarity=0.178 Sum_probs=73.8
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
.++++.+|||+|||+|.++..+++. +.+|+++|+++.++..+ ....++++..+|+.+...
T Consensus 88 ~~~~~~~vldiG~G~G~~~~~l~~~------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------- 154 (248)
T 2yvl_A 88 NLNKEKRVLEFGTGSGALLAVLSEV------AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV------- 154 (248)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHH------SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC-------
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHh------CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc-------
Confidence 3578899999999999999999998 37999999999986541 223578888888765421
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
++++||+|+++.+ .. ..++..+.+ +|||||++++....
T Consensus 155 -~~~~~D~v~~~~~-------~~---------~~~l~~~~~------------------~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 155 -PEGIFHAAFVDVR-------EP---------WHYLEKVHK------------------SLMEGAPVGFLLPT 192 (248)
T ss_dssp -CTTCBSEEEECSS-------CG---------GGGHHHHHH------------------HBCTTCEEEEEESS
T ss_pred -CCCcccEEEECCc-------CH---------HHHHHHHHH------------------HcCCCCEEEEEeCC
Confidence 2458999999642 11 134555666 99999999998753
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-11 Score=103.64 Aligned_cols=106 Identities=18% Similarity=0.196 Sum_probs=74.2
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc---------C-CCCCeEEEEeeecCCChhhHhhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL---------H-CDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~---------~-~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
+.+.+|||+|||+|..+..++++.+ ..+|+++|+++.+++.+ . ...+++++.+|+.+. +..
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~----~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~----l~~- 164 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPS----VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEF----MKQ- 164 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT----CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH----HHT-
T ss_pred CCCCEEEEECCCchHHHHHHHHcCC----CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHH----Hhh-
Confidence 4568999999999999999998743 47999999999986541 1 246899999987542 111
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
..++||+|++|.+.+.... .......++..+.+ +|||||.|++..
T Consensus 165 --~~~~fD~Ii~d~~~~~~~~-------~~l~~~~~l~~~~~------------------~LkpgG~lv~~~ 209 (304)
T 2o07_A 165 --NQDAFDVIITDSSDPMGPA-------ESLFKESYYQLMKT------------------ALKEDGVLCCQG 209 (304)
T ss_dssp --CSSCEEEEEEECC------------------CHHHHHHHH------------------HEEEEEEEEEEE
T ss_pred --CCCCceEEEECCCCCCCcc-------hhhhHHHHHHHHHh------------------ccCCCeEEEEec
Confidence 2468999999864211100 00113467777777 999999999876
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.4e-09 Score=91.98 Aligned_cols=110 Identities=15% Similarity=0.123 Sum_probs=77.8
Q ss_pred HHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCCCCeEEEEeeecCCChhhH
Q 038391 29 QIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCDARVQTVSADVINLPSNQV 104 (186)
Q Consensus 29 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~~~~~~~~~d~~~~~~~~l 104 (186)
.+...+. ++++.+|||+|||+|.++..+++.++ +.+++++|+++..... .....+++++.+|+....
T Consensus 175 ~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p----~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~---- 245 (348)
T 3lst_A 175 ILARAGD-FPATGTVADVGGGRGGFLLTVLREHP----GLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREV---- 245 (348)
T ss_dssp HHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCT----TEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCC----
T ss_pred HHHHhCC-ccCCceEEEECCccCHHHHHHHHHCC----CCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCCC----
Confidence 3444443 56788999999999999999999875 4799999995433311 233457999999986221
Q ss_pred hhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 105 RALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 105 ~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+ +||+|++.. ..|.... ......+.++.+ .|||||+|+|..+.
T Consensus 246 -----p--~~D~v~~~~-----vlh~~~d----~~~~~~L~~~~~------------------~LkpgG~l~i~e~~ 288 (348)
T 3lst_A 246 -----P--HADVHVLKR-----ILHNWGD----EDSVRILTNCRR------------------VMPAHGRVLVIDAV 288 (348)
T ss_dssp -----C--CCSEEEEES-----CGGGSCH----HHHHHHHHHHHH------------------TCCTTCEEEEEECC
T ss_pred -----C--CCcEEEEeh-----hccCCCH----HHHHHHHHHHHH------------------hcCCCCEEEEEEec
Confidence 3 899999843 2333322 223567778887 99999999987654
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.10 E-value=2e-11 Score=103.82 Aligned_cols=107 Identities=17% Similarity=0.250 Sum_probs=75.9
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC----------CCCCeEEEEeeecCCChhhHhh
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH----------CDARVQTVSADVINLPSNQVRA 106 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~----------~~~~~~~~~~d~~~~~~~~l~~ 106 (186)
.+++.+|||+|||+|..+..+++..+ ..+|+++|+++.++..++ ...+++++++|+... +..
T Consensus 118 ~~~~~~VLdIG~G~G~~a~~la~~~~----~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~----l~~ 189 (334)
T 1xj5_A 118 IPNPKKVLVIGGGDGGVLREVARHAS----IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF----LKN 189 (334)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTT----CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH----HHT
T ss_pred CCCCCEEEEECCCccHHHHHHHHcCC----CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHH----HHh
Confidence 35678999999999999999998743 479999999999865411 145899999987542 111
Q ss_pred hCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 107 LSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 107 ~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
+ +.++||+|++|...+.. .... .....++..+.+ .|||||.|++.
T Consensus 190 ~--~~~~fDlIi~d~~~p~~---~~~~----l~~~~~l~~~~~------------------~LkpgG~lv~~ 234 (334)
T 1xj5_A 190 A--AEGSYDAVIVDSSDPIG---PAKE----LFEKPFFQSVAR------------------ALRPGGVVCTQ 234 (334)
T ss_dssp S--CTTCEEEEEECCCCTTS---GGGG----GGSHHHHHHHHH------------------HEEEEEEEEEE
T ss_pred c--cCCCccEEEECCCCccC---cchh----hhHHHHHHHHHH------------------hcCCCcEEEEe
Confidence 1 24689999998642111 1110 012467777787 99999999996
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=5.6e-10 Score=94.66 Aligned_cols=110 Identities=12% Similarity=0.158 Sum_probs=79.8
Q ss_pred HHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCCh
Q 038391 29 QIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPS 101 (186)
Q Consensus 29 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~ 101 (186)
.+...+. ++++.+|||+|||+|.++..+++.++ +.+++++|+ +.+++.+ ....+++++.+|+.+.+.
T Consensus 181 ~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 254 (359)
T 1x19_A 181 LLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFP----ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY 254 (359)
T ss_dssp HHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCT----TCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCC
T ss_pred HHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCC----CCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCC
Confidence 3444443 56788999999999999999999874 479999999 9887542 234569999999876532
Q ss_pred hhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 102 NQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 102 ~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
..+|+|++... .+... .+.....+..+.+ .|||||+++|..+.
T Consensus 255 ----------~~~D~v~~~~v-----lh~~~----d~~~~~~l~~~~~------------------~L~pgG~l~i~e~~ 297 (359)
T 1x19_A 255 ----------PEADAVLFCRI-----LYSAN----EQLSTIMCKKAFD------------------AMRSGGRLLILDMV 297 (359)
T ss_dssp ----------CCCSEEEEESC-----GGGSC----HHHHHHHHHHHHT------------------TCCTTCEEEEEEEC
T ss_pred ----------CCCCEEEEech-----hccCC----HHHHHHHHHHHHH------------------hcCCCCEEEEEecc
Confidence 13499998432 22222 1235677888888 99999999876644
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.4e-10 Score=95.76 Aligned_cols=119 Identities=21% Similarity=0.186 Sum_probs=74.3
Q ss_pred HHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeC-CCCCCCCc---------CCC-------
Q 038391 24 AFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDV-KKVKVPSL---------HCD------- 86 (186)
Q Consensus 24 ~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDi-s~~~i~~~---------~~~------- 86 (186)
...+.+.+.......++.+|||+|||+|.++..+++. + ..+|+|+|+ ++.++..+ ...
T Consensus 64 ~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~-~----~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~ 138 (281)
T 3bzb_A 64 ARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLA-G----ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKR 138 (281)
T ss_dssp HHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHT-T----CSEEEEEECSCHHHHHHHHHHHHTTCC----------
T ss_pred HHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHc-C----CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCC
Confidence 3345555555444467889999999999999988875 2 249999999 78885431 110
Q ss_pred CCeEEEEeeecCCChhhHhhhCCCCCCccEEEe-CCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCC
Q 038391 87 ARVQTVSADVINLPSNQVRALSPKQKGFSVILS-DMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTD 165 (186)
Q Consensus 87 ~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (186)
.++++...+..+........+ ..++||+|++ +. .+.... ...++..+.+
T Consensus 139 ~~v~~~~~~~~~~~~~~~~~~--~~~~fD~Ii~~dv------l~~~~~------~~~ll~~l~~---------------- 188 (281)
T 3bzb_A 139 ASPKVVPYRWGDSPDSLQRCT--GLQRFQVVLLADL------LSFHQA------HDALLRSVKM---------------- 188 (281)
T ss_dssp CCCEEEECCTTSCTHHHHHHH--SCSSBSEEEEESC------CSCGGG------HHHHHHHHHH----------------
T ss_pred CCeEEEEecCCCccHHHHhhc--cCCCCCEEEEeCc------ccChHH------HHHHHHHHHH----------------
Confidence 256666555544322211111 2468999987 32 222211 4456667776
Q ss_pred Ccccc---c--CcEEEEEE
Q 038391 166 SGVLK---P--GGHLVIKL 179 (186)
Q Consensus 166 ~~~Lk---p--gG~lvi~~ 179 (186)
+|| | ||++++..
T Consensus 189 --~Lk~~~p~~gG~l~v~~ 205 (281)
T 3bzb_A 189 --LLALPANDPTAVALVTF 205 (281)
T ss_dssp --HBCCTTTCTTCEEEEEE
T ss_pred --HhcccCCCCCCEEEEEE
Confidence 889 9 99877643
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-12 Score=105.26 Aligned_cols=73 Identities=14% Similarity=0.253 Sum_probs=57.8
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC----CCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC----DARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~----~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
++++.+|||+|||+|.++..+++. +.+|+|+|+++.++..... ..+++++++|+.+.+.. .++
T Consensus 27 ~~~~~~VLDiG~G~G~~~~~l~~~------~~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~-------~~~ 93 (245)
T 1yub_A 27 LKETDTVYEIGTGKGHLTTKLAKI------SKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFP-------NKQ 93 (245)
T ss_dssp CCSSEEEEECSCCCSSCSHHHHHH------SSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCC-------CSS
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHh------CCeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcc-------cCC
Confidence 567889999999999999999998 4799999999999876332 35788889998766421 135
Q ss_pred CccEEEeCCCC
Q 038391 113 GFSVILSDMCP 123 (186)
Q Consensus 113 ~~D~V~~d~~~ 123 (186)
+| .|++|.+.
T Consensus 94 ~f-~vv~n~Py 103 (245)
T 1yub_A 94 RY-KIVGNIPY 103 (245)
T ss_dssp EE-EEEEECCS
T ss_pred Cc-EEEEeCCc
Confidence 78 78888763
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.08 E-value=7.7e-11 Score=110.21 Aligned_cols=106 Identities=12% Similarity=0.213 Sum_probs=77.9
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC------------CCCCeEEEEeeecCCChhhHh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH------------CDARVQTVSADVINLPSNQVR 105 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~------------~~~~~~~~~~d~~~~~~~~l~ 105 (186)
.++.+|||+|||+|.++..+++..++ ..+|+|+|+++.|+..+. ...+++++++|+.+++..
T Consensus 720 ~~g~rVLDVGCGTG~lai~LAr~g~p---~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~--- 793 (950)
T 3htx_A 720 SSASTLVDFGCGSGSLLDSLLDYPTS---LQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSR--- 793 (950)
T ss_dssp SCCSEEEEETCSSSHHHHHHTSSCCC---CCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTT---
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCC---CCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcc---
Confidence 47889999999999999999987422 369999999999975521 235799999999876542
Q ss_pred hhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 106 ALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 106 ~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
.++||+|++.. ..+.... .....++..+.+ +|||| .++|.+.+.
T Consensus 794 -----d~sFDlVV~~e-----VLeHL~d----p~l~~~L~eI~R------------------vLKPG-~LIISTPN~ 837 (950)
T 3htx_A 794 -----LHDVDIGTCLE-----VIEHMEE----DQACEFGEKVLS------------------LFHPK-LLIVSTPNY 837 (950)
T ss_dssp -----SCSCCEEEEES-----CGGGSCH----HHHHHHHHHHHH------------------TTCCS-EEEEEECBG
T ss_pred -----cCCeeEEEEeC-----chhhCCh----HHHHHHHHHHHH------------------HcCCC-EEEEEecCc
Confidence 57899999943 1222221 223356777777 99999 888887543
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.08 E-value=9.7e-10 Score=92.04 Aligned_cols=108 Identities=17% Similarity=0.171 Sum_probs=78.1
Q ss_pred HHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-------CCCCeEEEEeeecCCChh
Q 038391 30 IQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-------CDARVQTVSADVINLPSN 102 (186)
Q Consensus 30 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-------~~~~~~~~~~d~~~~~~~ 102 (186)
+...+. +++ .+|||+|||+|.++..+++.++ +.+++++|+ +.+++.+. ...+++++.+|+.+. .
T Consensus 160 ~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~- 230 (334)
T 2ip2_A 160 IPRLLD-FRG-RSFVDVGGGSGELTKAILQAEP----SARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQE-V- 230 (334)
T ss_dssp HHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCT----TCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTC-C-
T ss_pred HHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCC----CCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCC-C-
Confidence 444443 445 8999999999999999999874 479999999 99876521 235799999998652 1
Q ss_pred hHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 103 QVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 103 ~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
..+||+|++.. ..+.... ......+..+.+ .|||||+|+|....
T Consensus 231 --------~~~~D~v~~~~-----vl~~~~~----~~~~~~l~~~~~------------------~L~pgG~l~i~e~~ 274 (334)
T 2ip2_A 231 --------PSNGDIYLLSR-----IIGDLDE----AASLRLLGNCRE------------------AMAGDGRVVVIERT 274 (334)
T ss_dssp --------CSSCSEEEEES-----CGGGCCH----HHHHHHHHHHHH------------------HSCTTCEEEEEECC
T ss_pred --------CCCCCEEEEch-----hccCCCH----HHHHHHHHHHHH------------------hcCCCCEEEEEEec
Confidence 25799999843 2332221 223467777777 99999999988654
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-10 Score=102.55 Aligned_cols=100 Identities=20% Similarity=0.283 Sum_probs=70.6
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
..++.+|||+|||+|.++..+++. + ..+|+|+|+++ ++.. .....+++++++|+.+...
T Consensus 156 ~~~~~~VLDiGcGtG~la~~la~~-~----~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~-------- 221 (480)
T 3b3j_A 156 DFKDKIVLDVGCGSGILSFFAAQA-G----ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL-------- 221 (480)
T ss_dssp GTTTCEEEEESCSTTHHHHHHHHT-T----CSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC--------
T ss_pred hcCCCEEEEecCcccHHHHHHHHc-C----CCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCcc--------
Confidence 356789999999999999998885 2 46999999998 7533 2334689999999876531
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
.++||+|+++.. +.+... +.....+..+.+ .|||||.+++.
T Consensus 222 -~~~fD~Ivs~~~----~~~~~~-----e~~~~~l~~~~~------------------~LkpgG~li~~ 262 (480)
T 3b3j_A 222 -PEQVDIIISEPM----GYMLFN-----ERMLESYLHAKK------------------YLKPSGNMFPT 262 (480)
T ss_dssp -SSCEEEEECCCC----HHHHTC-----HHHHHHHHHGGG------------------GEEEEEEEESC
T ss_pred -CCCeEEEEEeCc----hHhcCc-----HHHHHHHHHHHH------------------hcCCCCEEEEE
Confidence 358999999542 111111 112334456666 99999999854
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.9e-10 Score=96.27 Aligned_cols=103 Identities=14% Similarity=0.166 Sum_probs=77.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
++++.+|||+|||+|.++..+++.++ +.+++++|+ +.+++.+....+++++.+|+.. +. + .||+
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~--------p--~~D~ 249 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFP----KLKCIVFDR-PQVVENLSGSNNLTYVGGDMFT-SI--------P--NADA 249 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-HHHHTTCCCBTTEEEEECCTTT-CC--------C--CCSE
T ss_pred cccCceEEEeCCCccHHHHHHHHHCC----CCeEEEeeC-HHHHhhcccCCCcEEEeccccC-CC--------C--CccE
Confidence 45678999999999999999999875 479999999 8888775544669999998864 21 2 3999
Q ss_pred EEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCccccc---CcEEEEEEccC
Q 038391 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKP---GGHLVIKLLES 182 (186)
Q Consensus 117 V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lkp---gG~lvi~~~~~ 182 (186)
|++.. ..|.... ......+..+.+ .||| ||+++|..+..
T Consensus 250 v~~~~-----~lh~~~d----~~~~~~l~~~~~------------------~L~p~~~gG~l~i~e~~~ 291 (352)
T 1fp2_A 250 VLLKY-----ILHNWTD----KDCLRILKKCKE------------------AVTNDGKRGKVTIIDMVI 291 (352)
T ss_dssp EEEES-----CGGGSCH----HHHHHHHHHHHH------------------HHSGGGCCCEEEEEECEE
T ss_pred EEeeh-----hhccCCH----HHHHHHHHHHHH------------------hCCCCCCCcEEEEEEeec
Confidence 99843 2332221 123467777777 9999 99999876543
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.1e-11 Score=103.51 Aligned_cols=116 Identities=19% Similarity=0.122 Sum_probs=77.9
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CC-CCCeEEEEeeecCCChhhHhhhCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HC-DARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~-~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.++.+|||+|||+|.++..+++.. ..+|+|+|+++.+++.+ .. ..+++++++|+.+... .+..
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-----~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~----~~~~ 289 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-----CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLR----TYRD 289 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-----CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHH----HHHH
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-----CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHH----HHHh
Confidence 478899999999999999999861 36999999999987541 22 2378999999865421 1111
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
.+.+||+|++|++.......... .........+..+.+ .|+|||++++..-..
T Consensus 290 ~~~~fD~Ii~dpP~~~~~~~~~~--~~~~~~~~~l~~~~~------------------~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 290 RGEKFDVIVMDPPKFVENKSQLM--GACRGYKDINMLAIQ------------------LLNEGGILLTFSCSG 342 (396)
T ss_dssp TTCCEEEEEECCSSTTTCSSSSS--CCCTHHHHHHHHHHH------------------TEEEEEEEEEEECCT
T ss_pred cCCCCCEEEECCCCCCCChhHHH--HHHHHHHHHHHHHHH------------------hcCCCcEEEEEeCCC
Confidence 14689999999763221111000 001124456666666 999999999977543
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-10 Score=99.83 Aligned_cols=98 Identities=16% Similarity=0.207 Sum_probs=69.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.+++.+|||+|||+|.++..++.... .++|+|+|+++.++..+ ....++++.++|+.+++.
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~----~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~-------- 282 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRY----SGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQ-------- 282 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTC----CSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGG--------
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCC----CCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCc--------
Confidence 57889999999999999999998742 25999999999997552 223578999999887643
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcC
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALG 149 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (186)
+.++||+|++|++... ..........+...++..+.+
T Consensus 283 ~~~~fD~Ii~npPyg~---r~~~~~~~~~ly~~~~~~l~r 319 (373)
T 3tm4_A 283 YVDSVDFAISNLPYGL---KIGKKSMIPDLYMKFFNELAK 319 (373)
T ss_dssp TCSCEEEEEEECCCC---------CCHHHHHHHHHHHHHH
T ss_pred ccCCcCEEEECCCCCc---ccCcchhHHHHHHHHHHHHHH
Confidence 2478999999986322 111111122344567777776
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=3e-10 Score=95.26 Aligned_cols=102 Identities=14% Similarity=0.091 Sum_probs=76.0
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
++..+|||+|||+|.++..+++.++ +.+++++|+ +.+++.+ ....++++..+|+... . +
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~--------p 233 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHE----DLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDP-L--------P 233 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC-C--------C
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCC----CCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCC-C--------C
Confidence 4568999999999999999999875 479999999 8886542 2346899999998632 1 2
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
. +||+|++.. ..+.... +.....+..+.+ .|||||+|+|....
T Consensus 234 ~-~~D~v~~~~-----vlh~~~~----~~~~~~l~~~~~------------------~L~pgG~l~i~e~~ 276 (332)
T 3i53_A 234 A-GAGGYVLSA-----VLHDWDD----LSAVAILRRCAE------------------AAGSGGVVLVIEAV 276 (332)
T ss_dssp C-SCSEEEEES-----CGGGSCH----HHHHHHHHHHHH------------------HHTTTCEEEEEECC
T ss_pred C-CCcEEEEeh-----hhccCCH----HHHHHHHHHHHH------------------hcCCCCEEEEEeec
Confidence 3 899999843 2333322 224567777777 99999999987654
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1e-09 Score=93.80 Aligned_cols=110 Identities=14% Similarity=0.168 Sum_probs=79.7
Q ss_pred HHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChh
Q 038391 30 IQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSN 102 (186)
Q Consensus 30 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~ 102 (186)
+...+. ++++.+|||+|||+|.++..+++.++ +.+++++|+ +.+++.+ ....++++..+|+... .
T Consensus 194 l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~- 265 (369)
T 3gwz_A 194 VAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFP----GLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFET-I- 265 (369)
T ss_dssp HHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTC-C-
T ss_pred HHHhCC-CccCcEEEEeCCCccHHHHHHHHHCC----CCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCC-C-
Confidence 444443 56678999999999999999999874 479999999 8876542 2356899999998732 1
Q ss_pred hHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 103 QVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 103 ~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
+. +||+|++.. ..+.... ......+..+.+ .|||||+|+|....-
T Consensus 266 -------p~-~~D~v~~~~-----vlh~~~d----~~~~~~L~~~~~------------------~L~pgG~l~i~e~~~ 310 (369)
T 3gwz_A 266 -------PD-GADVYLIKH-----VLHDWDD----DDVVRILRRIAT------------------AMKPDSRLLVIDNLI 310 (369)
T ss_dssp -------CS-SCSEEEEES-----CGGGSCH----HHHHHHHHHHHT------------------TCCTTCEEEEEEEBC
T ss_pred -------CC-CceEEEhhh-----hhccCCH----HHHHHHHHHHHH------------------HcCCCCEEEEEEecc
Confidence 23 899999843 2333322 223467788887 999999999876543
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.3e-10 Score=95.91 Aligned_cols=104 Identities=13% Similarity=0.179 Sum_probs=75.2
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
....+|||+|||+|.++..+++.++ +.+++++|+ +.+++.+ ....+++++.+|+.+...+ .
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-------~ 245 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNK----EVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVP-------F 245 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHST----TCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCC-------C
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCC----CCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCC-------C
Confidence 4567999999999999999999875 579999999 8776441 2235799999998764200 1
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
.++||+|++... .+.... +.....+..+.+ .|||||+|+|...
T Consensus 246 p~~~D~v~~~~v-----lh~~~~----~~~~~~l~~~~~------------------~L~pgG~l~i~e~ 288 (363)
T 3dp7_A 246 PTGFDAVWMSQF-----LDCFSE----EEVISILTRVAQ------------------SIGKDSKVYIMET 288 (363)
T ss_dssp CCCCSEEEEESC-----STTSCH----HHHHHHHHHHHH------------------HCCTTCEEEEEEC
T ss_pred CCCcCEEEEech-----hhhCCH----HHHHHHHHHHHH------------------hcCCCcEEEEEee
Confidence 258999998432 332221 224466777777 9999999988654
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.06 E-value=4.9e-11 Score=100.60 Aligned_cols=105 Identities=18% Similarity=0.231 Sum_probs=72.7
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc---------C-CCCCeEEEEeeecCCChhhHhhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL---------H-CDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~---------~-~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
+.+.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.+ . ...+++++.+|+.... ..
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~----~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l----~~- 177 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHES----VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFL----KN- 177 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTT----CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHH----HH-
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCC----CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHH----Hh-
Confidence 4568999999999999999998743 47999999999886431 1 1467899988875421 11
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHH-HHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVEL-GMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
..++||+|++|...+.. . ...+ ...++..+.+ .|+|||.|++..
T Consensus 178 --~~~~fD~Ii~d~~~~~~----~----~~~l~t~~~l~~~~~------------------~LkpgG~lv~~~ 222 (314)
T 2b2c_A 178 --HKNEFDVIITDSSDPVG----P----AESLFGQSYYELLRD------------------ALKEDGILSSQG 222 (314)
T ss_dssp --CTTCEEEEEECCC---------------------HHHHHHH------------------HEEEEEEEEEEC
T ss_pred --cCCCceEEEEcCCCCCC----c----chhhhHHHHHHHHHh------------------hcCCCeEEEEEC
Confidence 25689999998631110 0 0111 2577788887 999999999975
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.2e-10 Score=98.67 Aligned_cols=95 Identities=14% Similarity=0.257 Sum_probs=72.7
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
++++.+|||+|||+|.++.. ++. +.+|+|+|+++.++.. +....+++++++|+.+..
T Consensus 193 ~~~~~~VLDlg~G~G~~~l~-a~~------~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~--------- 256 (336)
T 2yx1_A 193 VSLNDVVVDMFAGVGPFSIA-CKN------AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD--------- 256 (336)
T ss_dssp CCTTCEEEETTCTTSHHHHH-TTT------SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---------
T ss_pred cCCCCEEEEccCccCHHHHh-ccC------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---------
Confidence 46889999999999999999 762 4799999999988654 223357999999987552
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
++||+|++|++... ..++..+.+ +|+|||.+++..+..
T Consensus 257 --~~fD~Vi~dpP~~~---------------~~~l~~~~~------------------~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 257 --VKGNRVIMNLPKFA---------------HKFIDKALD------------------IVEEGGVIHYYTIGK 294 (336)
T ss_dssp --CCEEEEEECCTTTG---------------GGGHHHHHH------------------HEEEEEEEEEEEEES
T ss_pred --CCCcEEEECCcHhH---------------HHHHHHHHH------------------HcCCCCEEEEEEeec
Confidence 58999999864211 135555566 899999999877654
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=6.9e-10 Score=94.23 Aligned_cols=102 Identities=17% Similarity=0.149 Sum_probs=75.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
++++.+|||+|||+|.++..+++.++ +.+++++|+ +.++..+ ....+++++++|+.+..
T Consensus 180 ~~~~~~vlDvG~G~G~~~~~l~~~~~----~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------- 245 (374)
T 1qzz_A 180 WSAVRHVLDVGGGNGGMLAAIALRAP----HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL--------- 245 (374)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHCC----CCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcC---------
Confidence 56788999999999999999999874 479999999 8886541 23347999999986521
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
+ ..||+|++... .+.... ......+..+.+ .|||||+|+|..+
T Consensus 246 ~-~~~D~v~~~~v-----l~~~~~----~~~~~~l~~~~~------------------~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 246 P-VTADVVLLSFV-----LLNWSD----EDALTILRGCVR------------------ALEPGGRLLVLDR 288 (374)
T ss_dssp S-CCEEEEEEESC-----GGGSCH----HHHHHHHHHHHH------------------HEEEEEEEEEEEC
T ss_pred C-CCCCEEEEecc-----ccCCCH----HHHHHHHHHHHH------------------hcCCCcEEEEEec
Confidence 1 24999998532 222221 123467777777 9999999998766
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.01 E-value=7e-10 Score=86.38 Aligned_cols=72 Identities=21% Similarity=0.238 Sum_probs=56.0
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-----CCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-----CDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-----~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
..++.+|||+|||+|.++..+++. + ..+|+|+|+++.++..+. ...+++++++|+.+++
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~-~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~----------- 110 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLL-G----AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN----------- 110 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHT-T----CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC-----------
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHc-C----CCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC-----------
Confidence 456889999999999999999987 2 358999999999865411 1117899999887642
Q ss_pred CCccEEEeCCCCC
Q 038391 112 KGFSVILSDMCPS 124 (186)
Q Consensus 112 ~~~D~V~~d~~~~ 124 (186)
.+||+|++|++..
T Consensus 111 ~~~D~v~~~~p~~ 123 (207)
T 1wy7_A 111 SRVDIVIMNPPFG 123 (207)
T ss_dssp CCCSEEEECCCCS
T ss_pred CCCCEEEEcCCCc
Confidence 3899999998643
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.5e-09 Score=91.82 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=75.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
++++.+|||+|||+|.++..+++..+ +.+++++|+ +.+++.+ ....+++++.+|+.+..
T Consensus 181 ~~~~~~vLDvG~G~G~~~~~l~~~~~----~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------- 246 (360)
T 1tw3_A 181 WTNVRHVLDVGGGKGGFAAAIARRAP----HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL--------- 246 (360)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------
T ss_pred CccCcEEEEeCCcCcHHHHHHHHhCC----CCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCC---------
Confidence 56788999999999999999999864 479999999 8886541 23347999999986421
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
...||+|++... .+.... ......+..+.+ .|||||+++|..+.
T Consensus 247 -~~~~D~v~~~~v-----l~~~~~----~~~~~~l~~~~~------------------~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 247 -PRKADAIILSFV-----LLNWPD----HDAVRILTRCAE------------------ALEPGGRILIHERD 290 (360)
T ss_dssp -SSCEEEEEEESC-----GGGSCH----HHHHHHHHHHHH------------------TEEEEEEEEEEECC
T ss_pred -CCCccEEEEccc-----ccCCCH----HHHHHHHHHHHH------------------hcCCCcEEEEEEEe
Confidence 235999998432 222221 123467777777 99999999987654
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.99 E-value=7e-10 Score=95.12 Aligned_cols=102 Identities=12% Similarity=0.058 Sum_probs=74.2
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC------CCCCeEEEEeeecC-CChhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH------CDARVQTVSADVIN-LPSNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~------~~~~~~~~~~d~~~-~~~~~l~~~~~~ 110 (186)
.++.+|||+| |+|.++..++...+ ..+|+|+|+++.+++.++ ...+++++++|+.+ ++.. .
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~----~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~-------~ 238 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGL----PKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDY-------A 238 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTC----CSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTT-------T
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhh-------c
Confidence 3578999999 99999999988732 379999999999975421 11279999999876 3311 1
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcE-EEEEEcc
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGH-LVIKLLE 181 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~-lvi~~~~ 181 (186)
.++||+|++|+++... . ...++..+.+ .|||||+ +++.+.+
T Consensus 239 ~~~fD~Vi~~~p~~~~-----------~-~~~~l~~~~~------------------~LkpgG~~~~~~~~~ 280 (373)
T 2qm3_A 239 LHKFDTFITDPPETLE-----------A-IRAFVGRGIA------------------TLKGPRCAGYFGITR 280 (373)
T ss_dssp SSCBSEEEECCCSSHH-----------H-HHHHHHHHHH------------------TBCSTTCEEEEEECT
T ss_pred cCCccEEEECCCCchH-----------H-HHHHHHHHHH------------------HcccCCeEEEEEEec
Confidence 3589999998753211 1 3567777887 9999995 4666554
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.98 E-value=2.6e-10 Score=96.53 Aligned_cols=113 Identities=19% Similarity=0.217 Sum_probs=74.7
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCC-CCCCeEEEEeCCCCCCCCcC-----CCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPL-DNGGSVVGIDVKKVKVPSLH-----CDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~-~~~~~v~gvDis~~~i~~~~-----~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
.+++.+|||+|||+|.++..+++.++.. +...+|+|+|+++.++..+. ...++.+.++|..... .
T Consensus 128 ~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~---------~ 198 (344)
T 2f8l_A 128 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL---------L 198 (344)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC---------C
T ss_pred CCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCcc---------c
Confidence 3467899999999999999999887420 00168999999998864411 1125788888876532 2
Q ss_pred CCCccEEEeCCCCCCCCCcccchHH----------HHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAAL----------SVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
..+||+|++|++... +..+... .......++..+.+ .|||||++++.+
T Consensus 199 ~~~fD~Ii~NPPfg~---~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~------------------~Lk~gG~~~~v~ 256 (344)
T 2f8l_A 199 VDPVDVVISDLPVGY---YPDDENAKTFELCREEGHSFAHFLFIEQGMR------------------YTKPGGYLFFLV 256 (344)
T ss_dssp CCCEEEEEEECCCSE---ESCHHHHTTSTTCCSSSCEEHHHHHHHHHHH------------------TEEEEEEEEEEE
T ss_pred cCCccEEEECCCCCC---cCchhhhhhccccCCCCcchHHHHHHHHHHH------------------HhCCCCEEEEEE
Confidence 468999999986321 1110000 00011246666666 999999999887
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.97 E-value=5.9e-10 Score=86.59 Aligned_cols=70 Identities=20% Similarity=0.207 Sum_probs=55.5
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC-CCCeEEEEeeecCCChhhHhhhCCCCCCcc
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC-DARVQTVSADVINLPSNQVRALSPKQKGFS 115 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~-~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D 115 (186)
..++.+|||+|||+|.++..+++. + ..+|+|+|+++.++..+.. ..+++++++|+.+++ ++||
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~-~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~-----------~~~D 112 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLL-G----AESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS-----------GKYD 112 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHT-T----BSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC-----------CCEE
T ss_pred CCCCCEEEEEeCCccHHHHHHHHc-C----CCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCC-----------CCee
Confidence 456889999999999999999987 2 3589999999999765221 117899999887542 5899
Q ss_pred EEEeCCC
Q 038391 116 VILSDMC 122 (186)
Q Consensus 116 ~V~~d~~ 122 (186)
+|++|++
T Consensus 113 ~v~~~~p 119 (200)
T 1ne2_A 113 TWIMNPP 119 (200)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999875
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=3.7e-10 Score=101.95 Aligned_cols=70 Identities=23% Similarity=0.388 Sum_probs=54.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
..+.+|||+|||.|.++..+++. |.+|+|||+++.+|..+ ....+++|.++++.++... . ..
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~------ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~----~--~~ 132 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK------GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAA----L--EE 132 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHH----C--CT
T ss_pred CCCCeEEEECCCCcHHHHHHHhC------CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhh----c--cC
Confidence 45679999999999999999997 78999999999997652 1123688888877544211 1 35
Q ss_pred CCccEEEe
Q 038391 112 KGFSVILS 119 (186)
Q Consensus 112 ~~~D~V~~ 119 (186)
++||+|+|
T Consensus 133 ~~fD~v~~ 140 (569)
T 4azs_A 133 GEFDLAIG 140 (569)
T ss_dssp TSCSEEEE
T ss_pred CCccEEEE
Confidence 78999999
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.9e-09 Score=89.52 Aligned_cols=113 Identities=19% Similarity=0.189 Sum_probs=72.4
Q ss_pred CEEEEEcccC--ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC------CCCCeEEEEeeecCCCh----hhHhhhC
Q 038391 41 SSVLDLGCAP--GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH------CDARVQTVSADVINLPS----NQVRALS 108 (186)
Q Consensus 41 ~~vLDlGcG~--G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~------~~~~~~~~~~d~~~~~~----~~l~~~~ 108 (186)
.+|||||||+ +..+..+++...+ +.+|+++|.|+.|+..++ ...+++++++|+.++.. ....+..
T Consensus 80 ~q~LDLGcG~pT~~~~~~la~~~~P---~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~ 156 (277)
T 3giw_A 80 RQFLDIGTGIPTSPNLHEIAQSVAP---ESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTL 156 (277)
T ss_dssp CEEEEESCCSCCSSCHHHHHHHHCT---TCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred CEEEEeCCCCCcccHHHHHHHHHCC---CCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccccc
Confidence 6999999997 5566666665433 689999999999986531 12469999999986521 1111111
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
..+..+ .|+++. ..+|..+.. .....+....+ .|+|||+|++..+..+
T Consensus 157 D~~~p~-av~~~a----vLH~l~d~~----~p~~~l~~l~~------------------~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 157 DLTRPV-ALTVIA----IVHFVLDED----DAVGIVRRLLE------------------PLPSGSYLAMSIGTAE 204 (277)
T ss_dssp CTTSCC-EEEEES----CGGGSCGGG----CHHHHHHHHHT------------------TSCTTCEEEEEEECCT
T ss_pred CcCCcc-hHHhhh----hHhcCCchh----hHHHHHHHHHH------------------hCCCCcEEEEEeccCC
Confidence 112233 455543 233333321 12456777777 9999999999998765
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.9e-09 Score=91.52 Aligned_cols=102 Identities=13% Similarity=0.170 Sum_probs=75.6
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
++++.+|||+|||+|.++..+++.++ +.+++++|+ +.+++.+....+++++.+|+.. +. + +||+
T Consensus 191 ~~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~--------~--~~D~ 254 (358)
T 1zg3_A 191 FEGLESLVDVGGGTGGVTKLIHEIFP----HLKCTVFDQ-PQVVGNLTGNENLNFVGGDMFK-SI--------P--SADA 254 (358)
T ss_dssp HHTCSEEEEETCTTSHHHHHHHHHCT----TSEEEEEEC-HHHHSSCCCCSSEEEEECCTTT-CC--------C--CCSE
T ss_pred ccCCCEEEEECCCcCHHHHHHHHHCC----CCeEEEecc-HHHHhhcccCCCcEEEeCccCC-CC--------C--CceE
Confidence 45678999999999999999999975 479999999 6777665545679999998865 21 2 4999
Q ss_pred EEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCccccc---CcEEEEEEcc
Q 038391 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKP---GGHLVIKLLE 181 (186)
Q Consensus 117 V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lkp---gG~lvi~~~~ 181 (186)
|++... .|.... ......+..+.+ .||| ||+++|..+.
T Consensus 255 v~~~~v-----lh~~~d----~~~~~~l~~~~~------------------~L~p~~~gG~l~i~e~~ 295 (358)
T 1zg3_A 255 VLLKWV-----LHDWND----EQSLKILKNSKE------------------AISHKGKDGKVIIIDIS 295 (358)
T ss_dssp EEEESC-----GGGSCH----HHHHHHHHHHHH------------------HTGGGGGGCEEEEEECE
T ss_pred EEEccc-----ccCCCH----HHHHHHHHHHHH------------------hCCCCCCCcEEEEEEec
Confidence 998432 332221 123467777777 9999 9999987654
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.2e-10 Score=94.69 Aligned_cols=70 Identities=20% Similarity=0.315 Sum_probs=53.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
++++.+|||+|||+|.++..+++. +.+|+|+|+++.++... ....+++++++|+...+
T Consensus 40 ~~~~~~VLDiG~G~G~lt~~La~~------~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~---------- 103 (299)
T 2h1r_A 40 IKSSDIVLEIGCGTGNLTVKLLPL------AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTV---------- 103 (299)
T ss_dssp CCTTCEEEEECCTTSTTHHHHTTT------SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSC----------
T ss_pred CCCcCEEEEEcCcCcHHHHHHHhc------CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCC----------
Confidence 577889999999999999999986 47999999999997541 12257899999987653
Q ss_pred CCCccEEEeCCC
Q 038391 111 QKGFSVILSDMC 122 (186)
Q Consensus 111 ~~~~D~V~~d~~ 122 (186)
..+||+|++|.+
T Consensus 104 ~~~~D~Vv~n~p 115 (299)
T 2h1r_A 104 FPKFDVCTANIP 115 (299)
T ss_dssp CCCCSEEEEECC
T ss_pred cccCCEEEEcCC
Confidence 237999999875
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.94 E-value=5.9e-10 Score=91.63 Aligned_cols=91 Identities=11% Similarity=-0.032 Sum_probs=69.7
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC----------CCCCeEEEEeeecCCChhhHhhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH----------CDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~----------~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
+.+.+|||+|||+|..+..+++. + .+|+++|+++.+++.++ ...+++++.+|.....
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-----~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~------- 137 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-----THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI------- 137 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-----CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-------
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-----CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-------
Confidence 45679999999999999998886 2 69999999998865422 1357888888876542
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
++||+|++|.. ... .++..+.+ .|||||.|++..
T Consensus 138 ----~~fD~Ii~d~~-------dp~---------~~~~~~~~------------------~L~pgG~lv~~~ 171 (262)
T 2cmg_A 138 ----KKYDLIFCLQE-------PDI---------HRIDGLKR------------------MLKEDGVFISVA 171 (262)
T ss_dssp ----CCEEEEEESSC-------CCH---------HHHHHHHT------------------TEEEEEEEEEEE
T ss_pred ----hhCCEEEECCC-------ChH---------HHHHHHHH------------------hcCCCcEEEEEc
Confidence 58999999742 111 26777887 999999999974
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-09 Score=91.75 Aligned_cols=74 Identities=15% Similarity=0.269 Sum_probs=60.7
Q ss_pred CCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC----CCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 35 KLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH----CDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~----~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
..++++.+|||+|||+|.+|..+++. +.+|+|||+++.+++... ...+++++++|+.+....
T Consensus 46 l~~~~~~~VLEIG~G~G~lT~~La~~------~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~-------- 111 (295)
T 3gru_A 46 ANLTKDDVVLEIGLGKGILTEELAKN------AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLN-------- 111 (295)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHH------SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGG--------
T ss_pred cCCCCcCEEEEECCCchHHHHHHHhc------CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcc--------
Confidence 34678899999999999999999998 479999999999976521 236899999999876543
Q ss_pred CCCccEEEeCCC
Q 038391 111 QKGFSVILSDMC 122 (186)
Q Consensus 111 ~~~~D~V~~d~~ 122 (186)
..+||.|++|.+
T Consensus 112 ~~~fD~Iv~NlP 123 (295)
T 3gru_A 112 KLDFNKVVANLP 123 (295)
T ss_dssp GSCCSEEEEECC
T ss_pred cCCccEEEEeCc
Confidence 347999999875
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.8e-09 Score=89.36 Aligned_cols=73 Identities=19% Similarity=0.217 Sum_probs=59.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC---cCCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS---LHCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~---~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
++++ +|||+|||+|.+|..+++. +.+|+|+|+++.+++. .....+++++++|+.+.+... ...
T Consensus 45 ~~~~-~VLEIG~G~G~lt~~L~~~------~~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~-------~~~ 110 (271)
T 3fut_A 45 PFTG-PVFEVGPGLGALTRALLEA------GAEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEE-------VPQ 110 (271)
T ss_dssp CCCS-CEEEECCTTSHHHHHHHHT------TCCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGG-------SCT
T ss_pred CCCC-eEEEEeCchHHHHHHHHHc------CCEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhh-------ccC
Confidence 6778 9999999999999999997 4799999999999754 122358999999998876432 136
Q ss_pred ccEEEeCCCC
Q 038391 114 FSVILSDMCP 123 (186)
Q Consensus 114 ~D~V~~d~~~ 123 (186)
+|.|++|.+.
T Consensus 111 ~~~iv~NlPy 120 (271)
T 3fut_A 111 GSLLVANLPY 120 (271)
T ss_dssp TEEEEEEECS
T ss_pred ccEEEecCcc
Confidence 8999998763
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=3.2e-09 Score=92.96 Aligned_cols=69 Identities=19% Similarity=0.247 Sum_probs=55.5
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC------CCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH------CDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~------~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
+.++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.+. ... ++++++|+.+..
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~------~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~---------- 350 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKR------GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVS---------- 350 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCC----------
T ss_pred cCCCCEEEEeeccchHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcC----------
Confidence 467889999999999999999986 479999999999976521 112 889999887653
Q ss_pred CCCccEEEeCCC
Q 038391 111 QKGFSVILSDMC 122 (186)
Q Consensus 111 ~~~~D~V~~d~~ 122 (186)
..+||+|++|++
T Consensus 351 ~~~fD~Vv~dPP 362 (425)
T 2jjq_A 351 VKGFDTVIVDPP 362 (425)
T ss_dssp CTTCSEEEECCC
T ss_pred ccCCCEEEEcCC
Confidence 127999999875
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=3.5e-09 Score=92.59 Aligned_cols=76 Identities=22% Similarity=0.265 Sum_probs=58.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
+.++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.+ ....+++|+++|+.+.... +...
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~------~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~----~~~~ 353 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQ------AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK----QPWA 353 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT------SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSS----SGGG
T ss_pred CCCCCEEEECCCCCCHHHHHHHhh------CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhh----hhhh
Confidence 567889999999999999999987 47999999999997542 2224799999998763211 0002
Q ss_pred CCCccEEEeCCC
Q 038391 111 QKGFSVILSDMC 122 (186)
Q Consensus 111 ~~~~D~V~~d~~ 122 (186)
.++||+|++|++
T Consensus 354 ~~~fD~Vv~dPP 365 (433)
T 1uwv_A 354 KNGFDKVLLDPA 365 (433)
T ss_dssp TTCCSEEEECCC
T ss_pred cCCCCEEEECCC
Confidence 468999999875
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.86 E-value=2e-09 Score=94.39 Aligned_cols=117 Identities=19% Similarity=0.217 Sum_probs=75.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCC---------CCCeEEEEeCCCCCCCCc-------CCC-CCeEEEEeeecCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLD---------NGGSVVGIDVKKVKVPSL-------HCD-ARVQTVSADVINL 99 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~---------~~~~v~gvDis~~~i~~~-------~~~-~~~~~~~~d~~~~ 99 (186)
..++.+|||.|||+|+++..+++.+.... ...+++|+|+++.++..+ ... .+.++.++|....
T Consensus 169 ~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~ 248 (445)
T 2okc_A 169 PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK 248 (445)
T ss_dssp CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS
T ss_pred CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCC
Confidence 46678999999999999999998752100 026899999999885431 111 1577888887654
Q ss_pred ChhhHhhhCCCCCCccEEEeCCCCCCCCCcccc----h--HHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCc
Q 038391 100 PSNQVRALSPKQKGFSVILSDMCPSVSGITTKD----A--ALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGG 173 (186)
Q Consensus 100 ~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG 173 (186)
. ...+||+|++|++.......... . .........++..+.+ .|||||
T Consensus 249 ~---------~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~------------------~Lk~gG 301 (445)
T 2okc_A 249 E---------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMML------------------MLKTGG 301 (445)
T ss_dssp C---------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHH------------------HEEEEE
T ss_pred c---------ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHH------------------HhccCC
Confidence 3 23489999999764332111000 0 0000012356666666 999999
Q ss_pred EEEEEEc
Q 038391 174 HLVIKLL 180 (186)
Q Consensus 174 ~lvi~~~ 180 (186)
++++.+-
T Consensus 302 ~~a~V~p 308 (445)
T 2okc_A 302 RAAVVLP 308 (445)
T ss_dssp EEEEEEE
T ss_pred EEEEEEC
Confidence 9998774
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.9e-10 Score=90.94 Aligned_cols=68 Identities=16% Similarity=0.172 Sum_probs=50.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
+++..+|||+|||+|-++..++...+ +.+|+++|+++.|++.. ....++++ .|.... .
T Consensus 47 l~~~~~VLDlGCG~GplAl~l~~~~p----~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~--~------- 111 (200)
T 3fzg_A 47 IKHVSSILDFGCGFNPLALYQWNENE----KIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD--V------- 111 (200)
T ss_dssp SCCCSEEEEETCTTHHHHHHHHCSSC----CCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH--H-------
T ss_pred cCCCCeEEEecCCCCHHHHHHHhcCC----CCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc--C-------
Confidence 57788999999999999999988754 47999999999997652 11124444 443221 1
Q ss_pred CCCCccEEEe
Q 038391 110 KQKGFSVILS 119 (186)
Q Consensus 110 ~~~~~D~V~~ 119 (186)
+.++||+|++
T Consensus 112 ~~~~~DvVLa 121 (200)
T 3fzg_A 112 YKGTYDVVFL 121 (200)
T ss_dssp TTSEEEEEEE
T ss_pred CCCCcChhhH
Confidence 4678999998
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=2.2e-09 Score=92.65 Aligned_cols=97 Identities=22% Similarity=0.095 Sum_probs=70.5
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cC---------------CCCCeEEEEeeec
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LH---------------CDARVQTVSADVI 97 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~---------------~~~~~~~~~~d~~ 97 (186)
++.+|||+|||+|.++..++...+ +.+|+++|+++.+++. .. ...+++++++|+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~----~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~ 122 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETP----AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDAN 122 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSS----CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCC----CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHH
Confidence 578999999999999999999864 3689999999988543 11 1123788888876
Q ss_pred CCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 98 NLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 98 ~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
..... ..++||+|+.|++.. ...+++.+.+ .||+||.+++
T Consensus 123 ~~~~~-------~~~~fD~I~lDP~~~---------------~~~~l~~a~~------------------~lk~gG~l~v 162 (378)
T 2dul_A 123 RLMAE-------RHRYFHFIDLDPFGS---------------PMEFLDTALR------------------SAKRRGILGV 162 (378)
T ss_dssp HHHHH-------STTCEEEEEECCSSC---------------CHHHHHHHHH------------------HEEEEEEEEE
T ss_pred HHHHh-------ccCCCCEEEeCCCCC---------------HHHHHHHHHH------------------hcCCCCEEEE
Confidence 43211 135799999986311 1245666666 8999999888
Q ss_pred EE
Q 038391 178 KL 179 (186)
Q Consensus 178 ~~ 179 (186)
..
T Consensus 163 t~ 164 (378)
T 2dul_A 163 TA 164 (378)
T ss_dssp EE
T ss_pred Ee
Confidence 64
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.81 E-value=4e-09 Score=87.38 Aligned_cols=70 Identities=19% Similarity=0.299 Sum_probs=56.9
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
++++.+|||+|||+|.++..+++. +.+|+|+|+++.++... ....+++++++|+.+.+.
T Consensus 26 ~~~~~~VLDiG~G~G~lt~~L~~~------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~-------- 91 (285)
T 1zq9_A 26 LRPTDVVLEVGPGTGNMTVKLLEK------AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL-------- 91 (285)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHH------SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC--------
T ss_pred CCCCCEEEEEcCcccHHHHHHHhh------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccc--------
Confidence 577889999999999999999998 47999999999996541 112579999999876531
Q ss_pred CCCCccEEEeCCC
Q 038391 110 KQKGFSVILSDMC 122 (186)
Q Consensus 110 ~~~~~D~V~~d~~ 122 (186)
.+||+|++|.+
T Consensus 92 --~~fD~vv~nlp 102 (285)
T 1zq9_A 92 --PFFDTCVANLP 102 (285)
T ss_dssp --CCCSEEEEECC
T ss_pred --hhhcEEEEecC
Confidence 37999999875
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.8e-08 Score=87.04 Aligned_cols=87 Identities=17% Similarity=0.172 Sum_probs=64.4
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCC----------------------------------CCCeEEE
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLD----------------------------------NGGSVVG 72 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~----------------------------------~~~~v~g 72 (186)
+...+......+++..|||++||+|.+++.++....+.- ...+|+|
T Consensus 183 lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 262 (385)
T 3ldu_A 183 LAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG 262 (385)
T ss_dssp HHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred HHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence 444444555567889999999999999999988742100 1257999
Q ss_pred EeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCC
Q 038391 73 IDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMC 122 (186)
Q Consensus 73 vDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~ 122 (186)
+|+++.++..+ ....++++.++|+.++.. ..+||+|++|++
T Consensus 263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~---------~~~~D~Iv~NPP 310 (385)
T 3ldu_A 263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS---------EDEFGFIITNPP 310 (385)
T ss_dssp EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC---------SCBSCEEEECCC
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc---------CCCCcEEEECCC
Confidence 99999997652 233479999999887642 358999999986
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.75 E-value=6.9e-08 Score=83.62 Aligned_cols=87 Identities=10% Similarity=0.113 Sum_probs=63.7
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCC----------------------------------CCCeEEE
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLD----------------------------------NGGSVVG 72 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~----------------------------------~~~~v~g 72 (186)
+...+......+++..|||.+||+|.+++.++......- ...+|+|
T Consensus 189 lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 268 (393)
T 3k0b_A 189 MAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG 268 (393)
T ss_dssp HHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence 444444444567889999999999999999987643200 1146999
Q ss_pred EeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCC
Q 038391 73 IDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMC 122 (186)
Q Consensus 73 vDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~ 122 (186)
+|+++.++.. +....++++.++|+.+... ..+||+|++|++
T Consensus 269 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~---------~~~fD~Iv~NPP 316 (393)
T 3k0b_A 269 GDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT---------EDEYGVVVANPP 316 (393)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC---------CCCSCEEEECCC
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC---------CCCCCEEEECCC
Confidence 9999999754 2334468999999987642 358999999986
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.1e-07 Score=82.28 Aligned_cols=88 Identities=14% Similarity=0.081 Sum_probs=64.4
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCC----------------------------------CCCeEEE
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLD----------------------------------NGGSVVG 72 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~----------------------------------~~~~v~g 72 (186)
|...+......+++..|||.+||+|.+++.++....+.- ...+|+|
T Consensus 182 LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~G 261 (384)
T 3ldg_A 182 MAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISG 261 (384)
T ss_dssp HHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEE
Confidence 444444445567889999999999999999887643200 0146999
Q ss_pred EeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCC
Q 038391 73 IDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123 (186)
Q Consensus 73 vDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~ 123 (186)
+|+++.++.. +....++++.++|+.+... ..+||+|++|++.
T Consensus 262 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~---------~~~fD~Iv~NPPY 310 (384)
T 3ldg_A 262 FDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKT---------NKINGVLISNPPY 310 (384)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC---------CCCSCEEEECCCC
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCc---------cCCcCEEEECCch
Confidence 9999999754 2334569999999987642 3589999999863
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=8.2e-09 Score=92.87 Aligned_cols=121 Identities=11% Similarity=0.097 Sum_probs=76.0
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCC--------------CCeEEEEeCCCCCCCCc------CCCC-----CeEE
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDN--------------GGSVVGIDVKKVKVPSL------HCDA-----RVQT 91 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~--------------~~~v~gvDis~~~i~~~------~~~~-----~~~~ 91 (186)
..++.+|||.|||+|+++..+++.+....+ ..+++|+|+++.++..+ +... +..+
T Consensus 167 p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I 246 (541)
T 2ar0_A 167 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI 246 (541)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSE
T ss_pred cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCe
Confidence 466889999999999999999887643110 13799999999885431 1112 2677
Q ss_pred EEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcc-c-c-hHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcc
Q 038391 92 VSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITT-K-D-AALSVELGMRAVDLALGPAALASPVNNSDSSTDSGV 168 (186)
Q Consensus 92 ~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (186)
.++|....... ...+||+|++|+|+....... . + .......-..++..+.+ .
T Consensus 247 ~~gDtL~~~~~-------~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~------------------~ 301 (541)
T 2ar0_A 247 RLGNTLGSDGE-------NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIE------------------T 301 (541)
T ss_dssp EESCTTSHHHH-------TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHH------------------H
T ss_pred EeCCCcccccc-------cccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHH------------------H
Confidence 88886543211 246899999998744322110 0 0 00000112256777776 9
Q ss_pred cccCcEEEEEEccC
Q 038391 169 LKPGGHLVIKLLES 182 (186)
Q Consensus 169 LkpgG~lvi~~~~~ 182 (186)
|||||++++.+-++
T Consensus 302 Lk~gGr~a~V~p~~ 315 (541)
T 2ar0_A 302 LHPGGRAAVVVPDN 315 (541)
T ss_dssp EEEEEEEEEEEEHH
T ss_pred hCCCCEEEEEecCc
Confidence 99999999887543
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.73 E-value=7.6e-09 Score=84.77 Aligned_cols=75 Identities=11% Similarity=0.216 Sum_probs=58.6
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
+.++.+|||+|||+|.+|..+++. +.+|+|+|+++.+++.. ....+++++++|+.+.+...+ . .+.
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~La~~------~~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~---~-~~~ 96 (255)
T 3tqs_A 27 PQKTDTLVEIGPGRGALTDYLLTE------CDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSV---K-TDK 96 (255)
T ss_dssp CCTTCEEEEECCTTTTTHHHHTTT------SSEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGS---C-CSS
T ss_pred CCCcCEEEEEcccccHHHHHHHHh------CCEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHh---c-cCC
Confidence 577899999999999999999987 47999999999997541 124689999999988764321 1 135
Q ss_pred CccEEEeCCC
Q 038391 113 GFSVILSDMC 122 (186)
Q Consensus 113 ~~D~V~~d~~ 122 (186)
+|| |++|.+
T Consensus 97 ~~~-vv~NlP 105 (255)
T 3tqs_A 97 PLR-VVGNLP 105 (255)
T ss_dssp CEE-EEEECC
T ss_pred CeE-EEecCC
Confidence 788 777764
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.6e-09 Score=91.85 Aligned_cols=100 Identities=14% Similarity=0.024 Sum_probs=71.4
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCC-eEEEEeeecCCChhhHhhhCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDAR-VQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~-~~~~~~d~~~~~~~~l~~~~~ 109 (186)
++|.+|||++||+|.++..++...+. ..+|+++|+++.+++. +....+ ++++++|+.+.... .
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~g---a~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~---~--- 121 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSC---VEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRK---E--- 121 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSC---EEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHS---C---
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHH---h---
Confidence 46889999999999999999997531 2689999999988643 233334 88888887543110 1
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
..++||+|++|+. + . ...++..+.+ .|+|||.|+++.
T Consensus 122 ~~~~fD~V~lDP~----g--~---------~~~~l~~a~~------------------~Lk~gGll~~t~ 158 (392)
T 3axs_A 122 WGFGFDYVDLDPF----G--T---------PVPFIESVAL------------------SMKRGGILSLTA 158 (392)
T ss_dssp CSSCEEEEEECCS----S--C---------CHHHHHHHHH------------------HEEEEEEEEEEE
T ss_pred hCCCCcEEEECCC----c--C---------HHHHHHHHHH------------------HhCCCCEEEEEe
Confidence 1458999999862 1 1 1135555665 899999998876
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.7e-08 Score=83.74 Aligned_cols=102 Identities=14% Similarity=0.141 Sum_probs=73.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
++...+|||+|||+|.++..++++++ +.+++..|. |.+++. .....+++++.+|+...+
T Consensus 177 ~~~~~~v~DvGgG~G~~~~~l~~~~p----~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~---------- 241 (353)
T 4a6d_A 177 LSVFPLMCDLGGGAGALAKECMSLYP----GCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDP---------- 241 (353)
T ss_dssp GGGCSEEEEETCTTSHHHHHHHHHCS----SCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSC----------
T ss_pred cccCCeEEeeCCCCCHHHHHHHHhCC----CceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCC----------
Confidence 46678999999999999999999986 478999997 444432 233578999999987542
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
...+|++++. ...|.... +.....+..+.+ .|+|||+++|...
T Consensus 242 ~~~~D~~~~~-----~vlh~~~d----~~~~~iL~~~~~------------------al~pgg~lli~e~ 284 (353)
T 4a6d_A 242 LPEADLYILA-----RVLHDWAD----GKCSHLLERIYH------------------TCKPGGGILVIES 284 (353)
T ss_dssp CCCCSEEEEE-----SSGGGSCH----HHHHHHHHHHHH------------------HCCTTCEEEEEEC
T ss_pred CCCceEEEee-----eecccCCH----HHHHHHHHHHHh------------------hCCCCCEEEEEEe
Confidence 2357999883 22443332 224456677777 8999999988654
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.8e-08 Score=81.62 Aligned_cols=73 Identities=12% Similarity=0.261 Sum_probs=56.0
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.+.++.+|||+|||+|.++..+++. +.+|+|+|+++.++... ....+++++++|+.+.+.. .+
T Consensus 27 ~~~~~~~VLDiG~G~G~lt~~l~~~------~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~-------~~ 93 (244)
T 1qam_A 27 RLNEHDNIFEIGSGKGHFTLELVQR------CNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFP-------KN 93 (244)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHH------SSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCC-------SS
T ss_pred CCCCCCEEEEEeCCchHHHHHHHHc------CCeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcc-------cC
Confidence 3567889999999999999999998 47999999999986541 1235799999998876532 12
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
..| .|++|.+
T Consensus 94 ~~~-~vv~nlP 103 (244)
T 1qam_A 94 QSY-KIFGNIP 103 (244)
T ss_dssp CCC-EEEEECC
T ss_pred CCe-EEEEeCC
Confidence 345 5777765
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.5e-09 Score=90.65 Aligned_cols=73 Identities=16% Similarity=0.215 Sum_probs=54.1
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCC---
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPK--- 110 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~--- 110 (186)
+.+|||+|||+|.++..+++. ..+|+|+|+++.+++.+ +...+++++++|+.+.. ..+...
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~------~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~----~~~~~~~~~ 283 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARN------FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFT----QAMNGVREF 283 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGG------SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHH----HHHSSCCCC
T ss_pred CCEEEEccCCCCHHHHHHHhc------CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHH----HHHhhcccc
Confidence 678999999999999999875 46999999999997541 12247899999876432 112110
Q ss_pred ---------CCCccEEEeCCC
Q 038391 111 ---------QKGFSVILSDMC 122 (186)
Q Consensus 111 ---------~~~~D~V~~d~~ 122 (186)
+.+||+|++|++
T Consensus 284 ~~l~~~~~~~~~fD~Vv~dPP 304 (369)
T 3bt7_A 284 NRLQGIDLKSYQCETIFVDPP 304 (369)
T ss_dssp TTGGGSCGGGCCEEEEEECCC
T ss_pred ccccccccccCCCCEEEECcC
Confidence 137999999875
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=6.4e-09 Score=87.22 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=59.8
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
++++.+|||+|||+|+++..+++.++ +++|+|+|+++.++..+ ....+++++++|+.++.. .+... ..
T Consensus 24 ~~~g~~vLD~g~G~G~~s~~la~~~~----~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~-~l~~~--g~ 96 (301)
T 1m6y_A 24 PEDEKIILDCTVGEGGHSRAILEHCP----GCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADF-LLKTL--GI 96 (301)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCT----TCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHH-HHHHT--TC
T ss_pred CCCCCEEEEEeCCcCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHH-HHHhc--CC
Confidence 57889999999999999999999864 47999999999997541 111589999999876531 12221 11
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
.+||.|++|.+
T Consensus 97 ~~~D~Vl~D~g 107 (301)
T 1m6y_A 97 EKVDGILMDLG 107 (301)
T ss_dssp SCEEEEEEECS
T ss_pred CCCCEEEEcCc
Confidence 58999999864
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.62 E-value=5.6e-08 Score=90.83 Aligned_cols=79 Identities=13% Similarity=0.157 Sum_probs=52.8
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------------CCCCCeEEEEeeecCCChhhH
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------------HCDARVQTVSADVINLPSNQV 104 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------------~~~~~~~~~~~d~~~~~~~~l 104 (186)
.+++.+|||.|||+|.++..+++.++.. ...+++|+|+++.++..+ +......+...|+......
T Consensus 319 l~~g~rVLDPaCGSG~FLIaaA~~l~ei-~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~-- 395 (878)
T 3s1s_A 319 LTEDEVISDPAAGSGNLLATVSAGFNNV-MPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPE-- 395 (878)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTSTTC-CGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGG--
T ss_pred CCCCCEEEECCCCccHHHHHHHHHhccc-CCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccccc--
Confidence 3568899999999999999999886420 125899999999875332 1111223334444443211
Q ss_pred hhhCCCCCCccEEEeCCCC
Q 038391 105 RALSPKQKGFSVILSDMCP 123 (186)
Q Consensus 105 ~~~~~~~~~~D~V~~d~~~ 123 (186)
...+||+|++|+|.
T Consensus 396 -----~~~kFDVVIgNPPY 409 (878)
T 3s1s_A 396 -----DFANVSVVVMNPPY 409 (878)
T ss_dssp -----GGTTEEEEEECCBC
T ss_pred -----ccCCCCEEEECCCc
Confidence 24689999999874
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.1e-08 Score=82.11 Aligned_cols=81 Identities=11% Similarity=0.202 Sum_probs=58.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC--CCCeEEEEeeecCCChhhHhhhCCCC-CC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC--DARVQTVSADVINLPSNQVRALSPKQ-KG 113 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~--~~~~~~~~~d~~~~~~~~l~~~~~~~-~~ 113 (186)
++++.+|||+|||+|.+|..+++.... ..++|+|+|+++.+++.... ..+++++++|+.+.+...+ ..+. ..
T Consensus 40 ~~~~~~VLEIG~G~G~lt~~La~~~~~--~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~~---~~~~~~~ 114 (279)
T 3uzu_A 40 PERGERMVEIGPGLGALTGPVIARLAT--PGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGSI---ARPGDEP 114 (279)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHHCB--TTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGGG---SCSSSSC
T ss_pred CCCcCEEEEEccccHHHHHHHHHhCCC--cCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhHh---cccccCC
Confidence 578899999999999999999998521 01349999999999765221 4679999999998865432 1100 13
Q ss_pred ccEEEeCCC
Q 038391 114 FSVILSDMC 122 (186)
Q Consensus 114 ~D~V~~d~~ 122 (186)
...|++|.+
T Consensus 115 ~~~vv~NlP 123 (279)
T 3uzu_A 115 SLRIIGNLP 123 (279)
T ss_dssp CEEEEEECC
T ss_pred ceEEEEccC
Confidence 457888764
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.56 E-value=4e-08 Score=80.03 Aligned_cols=75 Identities=20% Similarity=0.328 Sum_probs=57.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc--CCCCCeEEEEeeecCCChhhHhhhCCCCCCc
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL--HCDARVQTVSADVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~--~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~ 114 (186)
+.++.+|||+|||+|.+|..+++. + ..+|+|+|+++.++... ....+++++++|+...+...+ .+.+
T Consensus 29 ~~~~~~VLDiG~G~G~lt~~L~~~-~----~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~------~~~~ 97 (249)
T 3ftd_A 29 IEEGNTVVEVGGGTGNLTKVLLQH-P----LKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSL------GKEL 97 (249)
T ss_dssp CCTTCEEEEEESCHHHHHHHHTTS-C----CSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGS------CSSE
T ss_pred CCCcCEEEEEcCchHHHHHHHHHc-C----CCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHc------cCCc
Confidence 567889999999999999999987 1 37999999999996542 134578999999988765421 1234
Q ss_pred cEEEeCCCC
Q 038391 115 SVILSDMCP 123 (186)
Q Consensus 115 D~V~~d~~~ 123 (186)
.|++|.+.
T Consensus 98 -~vv~NlPy 105 (249)
T 3ftd_A 98 -KVVGNLPY 105 (249)
T ss_dssp -EEEEECCT
T ss_pred -EEEEECch
Confidence 78887753
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.9e-07 Score=86.39 Aligned_cols=91 Identities=18% Similarity=0.147 Sum_probs=63.4
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCC--------------------------------------CCC
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLD--------------------------------------NGG 68 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~--------------------------------------~~~ 68 (186)
|..........+++..|||.+||+|.+++.++....+-- ...
T Consensus 178 LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~ 257 (703)
T 3v97_A 178 LAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS 257 (703)
T ss_dssp HHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence 444444444457788999999999999998887631000 125
Q ss_pred eEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCC
Q 038391 69 SVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123 (186)
Q Consensus 69 ~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~ 123 (186)
+|+|+|+++.++.. +.....+++.++|+.++..+. ..++||+|++|+|.
T Consensus 258 ~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~------~~~~~d~Iv~NPPY 313 (703)
T 3v97_A 258 HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPL------PKGPYGTVLSNPPY 313 (703)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSC------TTCCCCEEEECCCC
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCcccc------ccCCCCEEEeCCCc
Confidence 89999999999754 233446899999998764220 12389999999863
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.54 E-value=6.5e-09 Score=79.07 Aligned_cols=90 Identities=22% Similarity=0.276 Sum_probs=61.8
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc--CCCCCeEEEEeeecCCChhhHhhhCCCCCCc
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL--HCDARVQTVSADVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~--~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~ 114 (186)
+++|.+|||+|||.. ++|+|+.|++.+ +...++++.++|+.+++.. ..+.++|
T Consensus 10 ~~~g~~vL~~~~g~v--------------------~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~-----~~~~~~f 64 (176)
T 2ld4_A 10 ISAGQFVAVVWDKSS--------------------PVEALKGLVDKLQALTGNEGRVSVENIKQLLQS-----AHKESSF 64 (176)
T ss_dssp CCTTSEEEEEECTTS--------------------CHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGG-----CCCSSCE
T ss_pred CCCCCEEEEecCCce--------------------eeeCCHHHHHHHHHhcccCcEEEEechhcCccc-----cCCCCCE
Confidence 678999999999861 277777776542 1222588999998765431 0035789
Q ss_pred cEEEeCCCCCCCCCcc-cchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 115 SVILSDMCPSVSGITT-KDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 115 D~V~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
|+|++.... .+. .+ ...++.++.+ +|||||+|++...
T Consensus 65 D~V~~~~~l----~~~~~~-------~~~~l~~~~r------------------~LkpgG~l~~~~~ 102 (176)
T 2ld4_A 65 DIILSGLVP----GSTTLH-------SAEILAEIAR------------------ILRPGGCLFLKEP 102 (176)
T ss_dssp EEEEECCST----TCCCCC-------CHHHHHHHHH------------------HEEEEEEEEEEEE
T ss_pred eEEEECChh----hhcccC-------HHHHHHHHHH------------------HCCCCEEEEEEcc
Confidence 999995432 222 22 3568888888 9999999999643
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.9e-08 Score=89.38 Aligned_cols=80 Identities=14% Similarity=0.050 Sum_probs=51.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCC-----------CCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDN-----------GGSVVGIDVKKVKVPS-------LHCDARVQTVSADVIN 98 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~-----------~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~ 98 (186)
..++ +|||.|||+|+++..+++.+....+ ..+++|+|+++.++.. +....++.+.++|...
T Consensus 243 p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~ 321 (544)
T 3khk_A 243 PYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFL 321 (544)
T ss_dssp CCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTT
T ss_pred cCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhc
Confidence 3444 9999999999999888765420000 2589999999987433 1222233335666543
Q ss_pred CChhhHhhhCCCCCCccEEEeCCCCC
Q 038391 99 LPSNQVRALSPKQKGFSVILSDMCPS 124 (186)
Q Consensus 99 ~~~~~l~~~~~~~~~~D~V~~d~~~~ 124 (186)
.+.. ...+||+|++|+|..
T Consensus 322 ~~~~-------~~~~fD~Iv~NPPf~ 340 (544)
T 3khk_A 322 DDQH-------PDLRADFVMTNPPFN 340 (544)
T ss_dssp SCSC-------TTCCEEEEEECCCSS
T ss_pred Cccc-------ccccccEEEECCCcC
Confidence 3211 246899999998754
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.53 E-value=7.8e-09 Score=84.74 Aligned_cols=75 Identities=15% Similarity=0.049 Sum_probs=56.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCC-------CCCCCcC-------CCCCeEEEEeeecCCChh
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKK-------VKVPSLH-------CDARVQTVSADVINLPSN 102 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~-------~~i~~~~-------~~~~~~~~~~d~~~~~~~ 102 (186)
..++.+|||+|||+|.++..+++. +++|+|+|+++ .++..+. ...+++++++|+.+...
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~------g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~- 153 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL------GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMP- 153 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT------TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHH-
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh------CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHH-
Confidence 456789999999999999999996 47999999999 7765421 12359999998865321
Q ss_pred hHhhhCCCC--CCccEEEeCCCC
Q 038391 103 QVRALSPKQ--KGFSVILSDMCP 123 (186)
Q Consensus 103 ~l~~~~~~~--~~~D~V~~d~~~ 123 (186)
.+ ++ ++||+|++|++.
T Consensus 154 ---~~--~~~~~~fD~V~~dP~~ 171 (258)
T 2r6z_A 154 ---AL--VKTQGKPDIVYLDPMY 171 (258)
T ss_dssp ---HH--HHHHCCCSEEEECCCC
T ss_pred ---hh--hccCCCccEEEECCCC
Confidence 11 12 589999999753
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.49 E-value=3.6e-07 Score=69.01 Aligned_cols=92 Identities=22% Similarity=0.224 Sum_probs=67.2
Q ss_pred CCCCEEEEEcccCC-hHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 38 KPGSSVLDLGCAPG-AWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 38 ~~~~~vLDlGcG~G-~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
+++.+|||+|||+| ..+..+++.. +..|+++|+++..+. +++.|+.+..... -+.||+
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~~-----g~~V~atDInp~Av~---------~v~dDiF~P~~~~-------Y~~~DL 92 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKHS-----KVDLVLTDIKPSHGG---------IVRDDITSPRMEI-------YRGAAL 92 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHHS-----CCEEEEECSSCSSTT---------EECCCSSSCCHHH-------HTTEEE
T ss_pred CCCCcEEEEccCCChHHHHHHHHhC-----CCeEEEEECCccccc---------eEEccCCCCcccc-------cCCcCE
Confidence 45679999999999 5899999853 578999999999976 7888988765431 248999
Q ss_pred EEe-CCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCCC
Q 038391 117 ILS-DMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDA 185 (186)
Q Consensus 117 V~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~ 185 (186)
|.+ +++ . ++....++.+. +-|.-|+|+.|.+|..
T Consensus 93 IYsirPP------~--------El~~~i~~lA~---------------------~v~adliI~pL~~E~~ 127 (153)
T 2k4m_A 93 IYSIRPP------A--------EIHSSLMRVAD---------------------AVGARLIIKPLTGEDI 127 (153)
T ss_dssp EEEESCC------T--------TTHHHHHHHHH---------------------HHTCEEEEECBTTBCC
T ss_pred EEEcCCC------H--------HHHHHHHHHHH---------------------HcCCCEEEEcCCCCcC
Confidence 954 332 1 22334555554 3478899998888764
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.9e-07 Score=84.04 Aligned_cols=81 Identities=15% Similarity=0.060 Sum_probs=57.9
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCC-CCeEEEEeeecCCChhhHhhhCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCD-ARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~-~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.++.+|+|.|||+|+++..+++.+... +..+++|+|+++.++.. +... .+..+.++|......+. .
T Consensus 220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~-~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~-----~ 293 (542)
T 3lkd_A 220 KQGFTLYDATMGSGSLLLNAKRYSRQP-QTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPT-----Q 293 (542)
T ss_dssp CTTCEEEETTCTTSTTGGGHHHHCSCT-TTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCC-----S
T ss_pred CCCCEEeecccchhHHHHHHHHHHHhc-cCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccc-----c
Confidence 467899999999999999999886421 24689999999987433 1121 45778888876542100 0
Q ss_pred CCCCccEEEeCCCCC
Q 038391 110 KQKGFSVILSDMCPS 124 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~ 124 (186)
...+||+|++|+|..
T Consensus 294 ~~~~fD~IvaNPPf~ 308 (542)
T 3lkd_A 294 EPTNFDGVLMNPPYS 308 (542)
T ss_dssp SCCCBSEEEECCCTT
T ss_pred ccccccEEEecCCcC
Confidence 256899999998754
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.6e-08 Score=86.85 Aligned_cols=75 Identities=16% Similarity=0.110 Sum_probs=57.7
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------C--CCCCeEEEEeeecCCChhhHhhhC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------H--CDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~--~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
+++|.+|||+|||+|..+..+++. +.+|+|+|+++.++..+ . ...+++++++|+.+.... .
T Consensus 91 l~~g~~VLDLgcG~G~~al~LA~~------g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~-~---- 159 (410)
T 3ll7_A 91 IREGTKVVDLTGGLGIDFIALMSK------ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPL-I---- 159 (410)
T ss_dssp SCTTCEEEESSCSSSHHHHHHHTT------CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHH-H----
T ss_pred cCCCCEEEEeCCCchHHHHHHHhc------CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhh-c----
Confidence 456899999999999999999886 57999999999997541 1 125799999998764211 1
Q ss_pred CCCCCccEEEeCCCC
Q 038391 109 PKQKGFSVILSDMCP 123 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~ 123 (186)
.+.+||+|++|++.
T Consensus 160 -~~~~fDvV~lDPPr 173 (410)
T 3ll7_A 160 -KTFHPDYIYVDPAR 173 (410)
T ss_dssp -HHHCCSEEEECCEE
T ss_pred -cCCCceEEEECCCC
Confidence 13589999999864
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=3.3e-08 Score=81.61 Aligned_cols=72 Identities=14% Similarity=0.047 Sum_probs=55.8
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
.+.+..+|||||||.|-++..++...+ ..+|+++|+++.+++. .....+.++...|..... +
T Consensus 129 ~i~~p~~VLDLGCG~GpLAl~~~~~~p----~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~---------p 195 (281)
T 3lcv_B 129 HLPRPNTLRDLACGLNPLAAPWMGLPA----ETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR---------L 195 (281)
T ss_dssp GSCCCSEEEETTCTTGGGCCTTTTCCT----TCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC---------C
T ss_pred ccCCCceeeeeccCccHHHHHHHhhCC----CCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC---------C
Confidence 456678999999999999999988654 5899999999999765 122345677777765443 4
Q ss_pred CCCccEEEeC
Q 038391 111 QKGFSVILSD 120 (186)
Q Consensus 111 ~~~~D~V~~d 120 (186)
..++|++++.
T Consensus 196 ~~~~DvaL~l 205 (281)
T 3lcv_B 196 DEPADVTLLL 205 (281)
T ss_dssp CSCCSEEEET
T ss_pred CCCcchHHHH
Confidence 6789999984
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.45 E-value=8.9e-08 Score=78.20 Aligned_cols=78 Identities=8% Similarity=0.109 Sum_probs=55.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC----CCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH----CDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~----~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
++++.+|||+|||+|.+|. +. ..+ ..+|+|+|+++.|++... ...+++++++|+...+....... .+
T Consensus 19 ~~~~~~VLEIG~G~G~lt~-l~-~~~----~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~~---~~ 89 (252)
T 1qyr_A 19 PQKGQAMVEIGPGLAALTE-PV-GER----LDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEK---MG 89 (252)
T ss_dssp CCTTCCEEEECCTTTTTHH-HH-HTT----CSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHHH---HT
T ss_pred CCCcCEEEEECCCCcHHHH-hh-hCC----CCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhcc---cC
Confidence 5778899999999999999 54 421 234999999999975421 12479999999988765432110 12
Q ss_pred CccEEEeCCCC
Q 038391 113 GFSVILSDMCP 123 (186)
Q Consensus 113 ~~D~V~~d~~~ 123 (186)
..+.|++|.+.
T Consensus 90 ~~~~vvsNlPY 100 (252)
T 1qyr_A 90 QPLRVFGNLPY 100 (252)
T ss_dssp SCEEEEEECCT
T ss_pred CceEEEECCCC
Confidence 45789998763
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.2e-07 Score=75.86 Aligned_cols=67 Identities=21% Similarity=0.182 Sum_probs=52.8
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
.+..+|||+|||.|-++..+. + +.+++|+||++.+++.. ....+.++...|....+ +.+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~----~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~---------~~~ 167 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---G----IASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAP---------PAE 167 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---T----CSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSC---------CCC
T ss_pred CCCCeEEEecCCccHHHHHhc---c----CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCC---------CCC
Confidence 567899999999999998877 2 58999999999997651 23456778888876654 346
Q ss_pred CccEEEeC
Q 038391 113 GFSVILSD 120 (186)
Q Consensus 113 ~~D~V~~d 120 (186)
++|+|++.
T Consensus 168 ~~DvvLll 175 (253)
T 3frh_A 168 AGDLALIF 175 (253)
T ss_dssp BCSEEEEE
T ss_pred CcchHHHH
Confidence 99999883
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.6e-07 Score=85.91 Aligned_cols=98 Identities=20% Similarity=0.221 Sum_probs=65.8
Q ss_pred CCEEEEEcccCChHH---HHHHHHhCCCCCCCeEEEEeCCCCCC------CCcCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 40 GSSVLDLGCAPGAWL---QVACQSLGPLDNGGSVVGIDVKKVKV------PSLHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~---~~l~~~~~~~~~~~~v~gvDis~~~i------~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
+..|||+|||+|-+. ..+++..+. ..+||+||.++.+. ..+....+++++++|+.+...
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~---~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~L--------- 425 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADR---RIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVA--------- 425 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTC---EEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCCC---------
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCC---CcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceeccC---------
Confidence 457999999999884 444444221 23799999998542 124566789999999988752
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV 176 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lv 176 (186)
.+++|+|++-. -|.. ...+.. . +.+.-..+ .|||||.++
T Consensus 426 PEKVDIIVSEw----MG~f-Ll~E~m---l-evL~Ardr------------------~LKPgGimi 464 (637)
T 4gqb_A 426 PEKADIIVSEL----LGSF-ADNELS---P-ECLDGAQH------------------FLKDDGVSI 464 (637)
T ss_dssp SSCEEEEECCC----CBTT-BGGGCH---H-HHHHHHGG------------------GEEEEEEEE
T ss_pred CcccCEEEEEc----Cccc-ccccCC---H-HHHHHHHH------------------hcCCCcEEc
Confidence 47999999953 2222 222221 2 45555566 999999976
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.39 E-value=5.8e-08 Score=79.75 Aligned_cols=74 Identities=19% Similarity=0.141 Sum_probs=55.1
Q ss_pred CCCC--CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC-------CCCc-------C-CCCCeEEEEeeecCC
Q 038391 37 IKPG--SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK-------VPSL-------H-CDARVQTVSADVINL 99 (186)
Q Consensus 37 ~~~~--~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~-------i~~~-------~-~~~~~~~~~~d~~~~ 99 (186)
++++ .+|||+|||+|..+..+++. +++|+++|+++.+ +... . ...+++++++|..+.
T Consensus 84 l~~g~~~~VLDl~~G~G~dal~lA~~------g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~ 157 (258)
T 2oyr_A 84 IKGDYLPDVVDATAGLGRDAFVLASV------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA 157 (258)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHHHH------TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHH
T ss_pred ccCCCCCEEEEcCCcCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHH
Confidence 4567 89999999999999999998 4689999999965 2211 1 124789999987653
Q ss_pred ChhhHhhhCCCCCCccEEEeCCCC
Q 038391 100 PSNQVRALSPKQKGFSVILSDMCP 123 (186)
Q Consensus 100 ~~~~l~~~~~~~~~~D~V~~d~~~ 123 (186)
... + ..+||+|++|++.
T Consensus 158 L~~----~---~~~fDvV~lDP~y 174 (258)
T 2oyr_A 158 LTD----I---TPRPQVVYLDPMF 174 (258)
T ss_dssp STT----C---SSCCSEEEECCCC
T ss_pred HHh----C---cccCCEEEEcCCC
Confidence 211 1 2479999999764
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.2e-07 Score=75.97 Aligned_cols=106 Identities=22% Similarity=0.215 Sum_probs=78.7
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----------cCCCCCeEEEEeeecCCChhhHhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----------LHCDARVQTVSADVINLPSNQVRA 106 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----------~~~~~~~~~~~~d~~~~~~~~l~~ 106 (186)
+..++||-+|-|.|+.+..+++..+ ..+|+.|||++..++. ...+++++++.+|....-..
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~----v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~---- 153 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKN----VESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ---- 153 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTT----CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSC----
T ss_pred CCCCeEEEECCCchHHHHHHHHcCC----cceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhh----
Confidence 4567999999999999999998753 3689999999988543 23468999999998765432
Q ss_pred hCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 107 LSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 107 ~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
..++||+|+.|..-+........ ...+.+.+.+ .|+|||+++.+.
T Consensus 154 ---~~~~yDvIi~D~~dp~~~~~~L~-------t~eFy~~~~~------------------~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 154 ---TSQTFDVIISDCTDPIGPGESLF-------TSAFYEGCKR------------------CLNPGGIFVAQN 198 (294)
T ss_dssp ---SSCCEEEEEESCCCCCCTTCCSS-------CCHHHHHHHH------------------TEEEEEEEEEEE
T ss_pred ---ccccCCEEEEeCCCcCCCchhhc-------CHHHHHHHHH------------------HhCCCCEEEEec
Confidence 35799999999742221111111 3367888887 999999999864
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=98.19 E-value=3.8e-06 Score=69.55 Aligned_cols=103 Identities=15% Similarity=0.098 Sum_probs=72.7
Q ss_pred cccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCCCCeEEE-EeeecCCChhhHhhhCCCCCCccEEEeCC
Q 038391 47 GCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCDARVQTV-SADVINLPSNQVRALSPKQKGFSVILSDM 121 (186)
Q Consensus 47 GcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~~~~~~~-~~d~~~~~~~~l~~~~~~~~~~D~V~~d~ 121 (186)
.+++|....++.+. .|-+|.-||..-....+ ....+..+++ +.|+..... .+++|+|++||
T Consensus 149 ~~~~~~~~~~~~k~-----~g~~vl~v~~~~~~p~k~v~wi~Pi~GAt~~~~lDfg~p~~---------~~k~DvV~SDM 214 (320)
T 2hwk_A 149 EHPQSDFSSFVSKL-----KGRTVLVVGEKLSVPGKMVDWLSDRPEATFRARLDLGIPGD---------VPKYDIIFVNV 214 (320)
T ss_dssp CCCCCCCHHHHHTS-----SCSEEEEEESCCCCTTSEEEEEESSTTCSEECCGGGCSCTT---------SCCEEEEEEEC
T ss_pred ccCCCCHHHHHhhC-----CCcEEEEEecccccCCceeEeeccCCCceeecccccCCccc---------cCcCCEEEEcC
Confidence 56667677666665 25688888533322111 2223445565 666665431 26799999999
Q ss_pred CCCCCCCc-c--cchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 122 CPSVSGIT-T--KDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 122 ~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
+++..|++ . .|+...+.+ ++..+.. +|+|||+|++|.|.+.|
T Consensus 215 Apn~sGh~yqQC~DHarii~L---al~fA~~------------------vLkPGGtfV~KvyggaD 259 (320)
T 2hwk_A 215 RTPYKYHHYQQCEDHAIKLSM---LTKKACL------------------HLNPGGTCVSIGYGYAD 259 (320)
T ss_dssp CCCCCSCHHHHHHHHHHHHHH---THHHHGG------------------GEEEEEEEEEEECCCCS
T ss_pred CCCCCCccccccchHHHHHHH---HHHHHHH------------------hcCCCceEEEEEecCCc
Confidence 99999999 6 777666666 7888888 99999999999999874
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.16 E-value=4.4e-05 Score=65.73 Aligned_cols=80 Identities=18% Similarity=0.114 Sum_probs=47.7
Q ss_pred CCEEEEEcccCChHHHHHHH--------Hh---CCCCCCCeEEEEeCCCCC-------CCCcC-----------CCCCeE
Q 038391 40 GSSVLDLGCAPGAWLQVACQ--------SL---GPLDNGGSVVGIDVKKVK-------VPSLH-----------CDARVQ 90 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~--------~~---~~~~~~~~v~gvDis~~~-------i~~~~-----------~~~~~~ 90 (186)
.-+|+|+|||+|..|..++. ++ +..-+..+|+..|+-... +.... ...+..
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 46899999999999988732 22 111135789999988877 23211 011223
Q ss_pred EEEeeecCCChhhHhhhCCCCCCccEEEeCCCCC
Q 038391 91 TVSADVINLPSNQVRALSPKQKGFSVILSDMCPS 124 (186)
Q Consensus 91 ~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~ 124 (186)
|+.+.-.+.-.+ + .+.++||+|+++.+.+
T Consensus 133 f~~gvpgSFy~r----l-fP~~S~d~v~Ss~aLH 161 (374)
T 3b5i_A 133 FVAGVPGSFYRR----L-FPARTIDFFHSAFSLH 161 (374)
T ss_dssp EEEEEESCTTSC----C-SCTTCEEEEEEESCTT
T ss_pred EEEecChhhhcc----c-CCCcceEEEEecceee
Confidence 444443332111 1 2578999999987543
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.15 E-value=1.9e-06 Score=71.52 Aligned_cols=84 Identities=19% Similarity=0.283 Sum_probs=62.3
Q ss_pred HHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-C-CCCeEEEEeeecCCChhhHh
Q 038391 28 LQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-C-DARVQTVSADVINLPSNQVR 105 (186)
Q Consensus 28 ~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-~-~~~~~~~~~d~~~~~~~~l~ 105 (186)
.+++..+. ++++..+||.+||.|+.+..+++. +++|+|+|.++.++..+. . ..+++++++++.++.. .+.
T Consensus 12 ~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~------~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~-~L~ 83 (285)
T 1wg8_A 12 QEALDLLA-VRPGGVYVDATLGGAGHARGILER------GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKR-HLA 83 (285)
T ss_dssp HHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHH-HHH
T ss_pred HHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC------CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHH-HHH
Confidence 33444443 678899999999999999999997 379999999999874421 1 1589999999987642 233
Q ss_pred hhCCCCCCccEEEeCC
Q 038391 106 ALSPKQKGFSVILSDM 121 (186)
Q Consensus 106 ~~~~~~~~~D~V~~d~ 121 (186)
... .+++|.|+.|.
T Consensus 84 ~~g--~~~vDgIL~DL 97 (285)
T 1wg8_A 84 ALG--VERVDGILADL 97 (285)
T ss_dssp HTT--CSCEEEEEEEC
T ss_pred HcC--CCCcCEEEeCC
Confidence 332 25899999875
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.14 E-value=8.2e-07 Score=81.89 Aligned_cols=107 Identities=17% Similarity=0.151 Sum_probs=65.7
Q ss_pred CCEEEEEcccCChHHHHH---HHHhC----CCC--CCCeEEEEeCCCCCCC------CcCCCCCeEEEEeeecCCChhhH
Q 038391 40 GSSVLDLGCAPGAWLQVA---CQSLG----PLD--NGGSVVGIDVKKVKVP------SLHCDARVQTVSADVINLPSNQV 104 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l---~~~~~----~~~--~~~~v~gvDis~~~i~------~~~~~~~~~~~~~d~~~~~~~~l 104 (186)
+..|||+|||+|-+.... ++..+ ... ...+|++||.++..+. .+....+++++++|+.+...+.
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~- 488 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIA- 488 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHH-
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhccccc-
Confidence 468999999999986433 22221 000 0249999999985531 1345677999999998764310
Q ss_pred hhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEE
Q 038391 105 RALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV 176 (186)
Q Consensus 105 ~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lv 176 (186)
.. ...+++|+|++-. .|.. .+.+ +..+.+.-+.+ .|||||.++
T Consensus 489 ~~--~~~ekVDIIVSEl----mGsf-l~nE----L~pe~Ld~v~r------------------~Lkp~Gi~i 531 (745)
T 3ua3_A 489 KD--RGFEQPDIIVSEL----LGSF-GDNE----LSPECLDGVTG------------------FLKPTTISI 531 (745)
T ss_dssp HH--TTCCCCSEEEECC----CBTT-BGGG----SHHHHHHTTGG------------------GSCTTCEEE
T ss_pred cc--CCCCcccEEEEec----cccc-cchh----ccHHHHHHHHH------------------hCCCCcEEE
Confidence 00 0146999999954 2222 1222 23345555556 999999876
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.06 E-value=4.4e-06 Score=71.00 Aligned_cols=89 Identities=19% Similarity=0.211 Sum_probs=65.8
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc--CCCCCeEEEEeeecCCChhhH
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL--HCDARVQTVSADVINLPSNQV 104 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~--~~~~~~~~~~~d~~~~~~~~l 104 (186)
+.|.+..+. +++|..++|.+||.|+.+..+++.+++ .++|+|+|.++.+++.+ ....+++++++++.++.. .+
T Consensus 46 l~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~---~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~l~~-~L 120 (347)
T 3tka_A 46 LDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGE---EGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGE-YV 120 (347)
T ss_dssp THHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCT---TCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGGHHH-HH
T ss_pred HHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHHHHH-HH
Confidence 344555444 688999999999999999999998765 68999999999886542 124689999999887642 22
Q ss_pred hhhCCCCCCccEEEeCC
Q 038391 105 RALSPKQKGFSVILSDM 121 (186)
Q Consensus 105 ~~~~~~~~~~D~V~~d~ 121 (186)
..... .+++|.|+.|.
T Consensus 121 ~~~g~-~~~vDgILfDL 136 (347)
T 3tka_A 121 AERDL-IGKIDGILLDL 136 (347)
T ss_dssp HHTTC-TTCEEEEEEEC
T ss_pred HhcCC-CCcccEEEECC
Confidence 22211 23699999975
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.06 E-value=2.7e-06 Score=69.59 Aligned_cols=108 Identities=15% Similarity=0.174 Sum_probs=66.0
Q ss_pred CCCCEEEEEcccCChHHHHHHHHh------CCCC--CCCeEEEEeCCCCC---CC-------------C---c-------
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSL------GPLD--NGGSVVGIDVKKVK---VP-------------S---L------- 83 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~------~~~~--~~~~v~gvDis~~~---i~-------------~---~------- 83 (186)
+++.+|||+|+|+|..+..+++.+ .+.. ...+++++|..+.. +. . .
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 455799999999999998887764 3310 02589999998821 11 0 0
Q ss_pred --------CCCCCeEEEEeeecCCChhhHhhhCC-CCCCccEEEeCCC-CCCC-CCcccchHHHHHHHHHHHHHHcCCcc
Q 038391 84 --------HCDARVQTVSADVINLPSNQVRALSP-KQKGFSVILSDMC-PSVS-GITTKDAALSVELGMRAVDLALGPAA 152 (186)
Q Consensus 84 --------~~~~~~~~~~~d~~~~~~~~l~~~~~-~~~~~D~V~~d~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (186)
....+++++.+|+.+.. ..+.. ....||.|+.|+. |... ..|. ..++..+.+
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l----~~~~~~~~~~~D~iflD~fsp~~~p~lw~----------~~~l~~l~~--- 201 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELI----SQLDDSLNQKVDAWFLDGFAPAKNPDMWT----------QNLFNAMAR--- 201 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHG----GGSCGGGTTCEEEEEECSSCTTTCGGGCC----------HHHHHHHHH---
T ss_pred chhheeccCCceEEEEEECcHHHHH----hhcccccCCeEEEEEECCCCcccChhhcC----------HHHHHHHHH---
Confidence 01135667788876531 11100 0137999999862 2111 1122 256777777
Q ss_pred cCCCCCCCCCCCCCcccccCcEEEE
Q 038391 153 LASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 153 ~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
+|||||+|+.
T Consensus 202 ---------------~L~pGG~l~t 211 (257)
T 2qy6_A 202 ---------------LARPGGTLAT 211 (257)
T ss_dssp ---------------HEEEEEEEEE
T ss_pred ---------------HcCCCcEEEE
Confidence 9999999883
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.04 E-value=9.1e-06 Score=64.37 Aligned_cols=77 Identities=17% Similarity=0.138 Sum_probs=51.5
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCC--CCCeEEEEeeecCCC--------
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHC--DARVQTVSADVINLP-------- 100 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~--~~~~~~~~~d~~~~~-------- 100 (186)
++..+||++|| |+-|..+++.. +++|+.+|.++...+. +.. ..+++++.+|+....
T Consensus 29 ~~a~~VLEiGt--GySTl~lA~~~-----~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~ 101 (202)
T 3cvo_A 29 EEAEVILEYGS--GGSTVVAAELP-----GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSD 101 (202)
T ss_dssp HHCSEEEEESC--SHHHHHHHTST-----TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSS
T ss_pred hCCCEEEEECc--hHHHHHHHHcC-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccc
Confidence 35779999998 57778887731 4899999999987433 233 567999999865421
Q ss_pred --hhhHhhh------CCCCCCccEEEeCC
Q 038391 101 --SNQVRAL------SPKQKGFSVILSDM 121 (186)
Q Consensus 101 --~~~l~~~------~~~~~~~D~V~~d~ 121 (186)
...+..+ ....++||+|+.|+
T Consensus 102 ~~~~~l~~~~~~i~~~~~~~~fDlIfIDg 130 (202)
T 3cvo_A 102 AKWRSYPDYPLAVWRTEGFRHPDVVLVDG 130 (202)
T ss_dssp TTGGGTTHHHHGGGGCTTCCCCSEEEECS
T ss_pred hhhhhHHHHhhhhhccccCCCCCEEEEeC
Confidence 0111111 01136899999986
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.95 E-value=4.1e-05 Score=63.48 Aligned_cols=104 Identities=13% Similarity=0.036 Sum_probs=70.0
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCC-CCCeEEEEeCCCCCCCC---------------------------------c
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLD-NGGSVVGIDVKKVKVPS---------------------------------L 83 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~-~~~~v~gvDis~~~i~~---------------------------------~ 83 (186)
...+.||++|+..|+.+..++..++..+ ++.+|+++|..+.+-+. .
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 3456999999999999999887763111 15789999976543110 1
Q ss_pred CC-CCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCC
Q 038391 84 HC-DARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDS 162 (186)
Q Consensus 84 ~~-~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (186)
.. ..+++++.+++.+.. ..+ +.++||+|+.|+. . .+-....++....
T Consensus 185 gl~~~~I~li~Gda~etL----~~~--~~~~~d~vfIDaD------~-------y~~~~~~Le~~~p------------- 232 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTL----PTA--PIDTLAVLRMDGD------L-------YESTWDTLTNLYP------------- 232 (282)
T ss_dssp TCCSTTEEEEESCHHHHS----TTC--CCCCEEEEEECCC------S-------HHHHHHHHHHHGG-------------
T ss_pred CCCcCceEEEEeCHHHHH----hhC--CCCCEEEEEEcCC------c-------cccHHHHHHHHHh-------------
Confidence 12 368999999886422 122 3468999999762 1 0113456777776
Q ss_pred CCCCcccccCcEEEEE
Q 038391 163 STDSGVLKPGGHLVIK 178 (186)
Q Consensus 163 ~~~~~~LkpgG~lvi~ 178 (186)
.|+|||++++-
T Consensus 233 -----~L~pGGiIv~D 243 (282)
T 2wk1_A 233 -----KVSVGGYVIVD 243 (282)
T ss_dssp -----GEEEEEEEEES
T ss_pred -----hcCCCEEEEEc
Confidence 99999999873
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.93 E-value=6.9e-06 Score=73.66 Aligned_cols=93 Identities=19% Similarity=0.244 Sum_probs=58.0
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCC---------CCeEEEEeCCCCCCCCc------CCCCCeEE
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDN---------GGSVVGIDVKKVKVPSL------HCDARVQT 91 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~---------~~~v~gvDis~~~i~~~------~~~~~~~~ 91 (186)
+.++........++.+|+|-+||+|+++..+.+++...+. ...++|+|+.+.+...+ +.....++
T Consensus 205 Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I 284 (530)
T 3ufb_A 205 VVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRI 284 (530)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEE
T ss_pred HHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccc
Confidence 3333333333567889999999999999888876543211 24699999999774321 22233455
Q ss_pred EEeeecCCChhhHhhhCCCCCCccEEEeCCCC
Q 038391 92 VSADVINLPSNQVRALSPKQKGFSVILSDMCP 123 (186)
Q Consensus 92 ~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~ 123 (186)
..+|....+... . ....+||+|++|+|.
T Consensus 285 ~~~dtL~~~~~~---~-~~~~~fD~Il~NPPf 312 (530)
T 3ufb_A 285 DPENSLRFPLRE---M-GDKDRVDVILTNPPF 312 (530)
T ss_dssp ECSCTTCSCGGG---C-CGGGCBSEEEECCCS
T ss_pred cccccccCchhh---h-cccccceEEEecCCC
Confidence 666655433211 0 123589999999874
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=7e-05 Score=64.67 Aligned_cols=80 Identities=18% Similarity=0.097 Sum_probs=46.3
Q ss_pred CCEEEEEcccCChHHHHHHHH----hCC---------CCCCCeEEEEeCCCCCC-------CC--------cCCCCCeEE
Q 038391 40 GSSVLDLGCAPGAWLQVACQS----LGP---------LDNGGSVVGIDVKKVKV-------PS--------LHCDARVQT 91 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~----~~~---------~~~~~~v~gvDis~~~i-------~~--------~~~~~~~~~ 91 (186)
.-+|+|+||++|..|..+... +.. ..+..+|+..|+-..-. .. .....+.-|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 468999999999999888876 111 01235777778764432 10 001112345
Q ss_pred EEeeecCCChhhHhhhCCCCCCccEEEeCCCCC
Q 038391 92 VSADVINLPSNQVRALSPKQKGFSVILSDMCPS 124 (186)
Q Consensus 92 ~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~ 124 (186)
+.+.-.+.= ..+ .+.+++|+|+++.+.+
T Consensus 133 ~~gvpgSFy----~rl-fp~~S~d~v~Ss~aLH 160 (384)
T 2efj_A 133 IGAMPGSFY----SRL-FPEESMHFLHSCYCLH 160 (384)
T ss_dssp EEECCSCTT----SCC-SCTTCEEEEEEESCTT
T ss_pred EEecchhhh----hcc-CCCCceEEEEecceee
Confidence 555433221 111 2578999999987543
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=2.5e-05 Score=67.31 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=74.3
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----------C---CCCCeEEEEeeecCCChhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----------H---CDARVQTVSADVINLPSNQ 103 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----------~---~~~~~~~~~~d~~~~~~~~ 103 (186)
.+.++||=+|-|.|+....+.+. + ..+|+.|||++..++.+ . ..++++++.+|....-
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh-~----~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl--- 275 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKL-K----PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVL--- 275 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTT-C----CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHH---
T ss_pred CCCCeEEEECCCcHHHHHHHHhc-C----CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHH---
Confidence 34689999999999999999986 2 36899999999875431 1 1245788888876432
Q ss_pred HhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 104 VRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 104 l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
++....+++||+|+.|..-.... ..+.........+.+++.+.+ .|+|||.++.+
T Consensus 276 -~~~~~~~~~yDvIIvDl~D~~~s-~~p~g~a~~Lft~eFy~~~~~------------------~L~p~GVlv~Q 330 (381)
T 3c6k_A 276 -KRYAKEGREFDYVINDLTAVPIS-TSPEEDSTWEFLRLILDLSMK------------------VLKQDGKYFTQ 330 (381)
T ss_dssp -HHHHHHTCCEEEEEEECCSSCCC-CC----CHHHHHHHHHHHHHH------------------TEEEEEEEEEE
T ss_pred -HhhhhccCceeEEEECCCCCccc-CcccCcchHHHHHHHHHHHHH------------------hcCCCCEEEEe
Confidence 21111246899999986311100 111111123335678888887 99999999975
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.75 E-value=8.2e-05 Score=63.70 Aligned_cols=78 Identities=15% Similarity=0.085 Sum_probs=47.3
Q ss_pred CCEEEEEcccCChHHHHHHHH--------h---CC-CCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQS--------L---GP-LDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLP 100 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~--------~---~~-~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~ 100 (186)
.-+|+|+||++|..|..+.+. . +. ..+..+|+..|+-...... .....+.-|+.+.-.+.=
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy 131 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence 357999999999888655443 1 10 1135789999998877321 011013456666544321
Q ss_pred hhhHhhhCCCCCCccEEEeCCC
Q 038391 101 SNQVRALSPKQKGFSVILSDMC 122 (186)
Q Consensus 101 ~~~l~~~~~~~~~~D~V~~d~~ 122 (186)
.+ + .+.+++|+|+++.+
T Consensus 132 ~r----l-fp~~S~d~v~Ss~a 148 (359)
T 1m6e_X 132 GR----L-FPRNTLHFIHSSYS 148 (359)
T ss_dssp SC----C-SCTTCBSCEEEESC
T ss_pred hc----c-CCCCceEEEEehhh
Confidence 11 1 25789999999875
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00028 Score=60.58 Aligned_cols=102 Identities=16% Similarity=0.073 Sum_probs=65.2
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCC-cCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEE
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPS-LHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~-~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~ 118 (186)
-+++||.||.|+++.-+.+. |. .|+++|+++..+.. .....+..++++|+.++....+.........+|+|+
T Consensus 3 ~~vidLFsG~GGlslG~~~a------G~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ 76 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA------GFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGII 76 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH------TCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEE
T ss_pred CeEEEEccCcCHHHHHHHHC------CCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEE
Confidence 37999999999999999887 34 57899999988543 122345677889998886554432221246899999
Q ss_pred eCCCCCCCCCccc--chHHHHHHHHHHHHHHc
Q 038391 119 SDMCPSVSGITTK--DAALSVELGMRAVDLAL 148 (186)
Q Consensus 119 ~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 148 (186)
.+.+|..-..... .......+....+..+.
T Consensus 77 ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~ 108 (376)
T 3g7u_A 77 GGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVS 108 (376)
T ss_dssp ECCCCCTTC-------CHHHHHHHHHHHHHHH
T ss_pred ecCCCCCcccccCCCCCCchHHHHHHHHHHHH
Confidence 9887643322211 11223345555555555
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00023 Score=58.77 Aligned_cols=39 Identities=23% Similarity=0.229 Sum_probs=34.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.++..|||++||+|..+..+++. +.+++|+|+++.++..
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~------g~~~~g~e~~~~~~~~ 272 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARW------GRRALGVELVPRYAQL 272 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT------TCEEEEEESCHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc------CCeEEEEeCCHHHHHH
Confidence 67899999999999999888775 5799999999988643
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00041 Score=58.68 Aligned_cols=77 Identities=19% Similarity=0.145 Sum_probs=52.3
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-CCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEe
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-HCDARVQTVSADVINLPSNQVRALSPKQKGFSVILS 119 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~ 119 (186)
.+|+|+.||.|+++..+.+.-.. -..|+++|+++.++... .......++.+|+.++....+.. ..+|+|+.
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~---~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~-----~~~D~l~~ 74 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIP---AQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDR-----LSFDMILM 74 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCS---EEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHH-----HCCSEEEE
T ss_pred CeEEEeCcCccHHHHHHHHCCCC---ceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCc-----CCcCEEEE
Confidence 47999999999999999887100 12699999999875441 12233456788988876443321 26999999
Q ss_pred CCCCCC
Q 038391 120 DMCPSV 125 (186)
Q Consensus 120 d~~~~~ 125 (186)
+.+|..
T Consensus 75 gpPCq~ 80 (343)
T 1g55_A 75 SPPCQP 80 (343)
T ss_dssp CCC---
T ss_pred cCCCcc
Confidence 987643
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00028 Score=58.52 Aligned_cols=74 Identities=16% Similarity=0.127 Sum_probs=53.9
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC---Cc-CCCCCeEEEEeeecCCChhhHhhhCCCCCCcc
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP---SL-HCDARVQTVSADVINLPSNQVRALSPKQKGFS 115 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~---~~-~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D 115 (186)
+..+||+-+|+|.++..+.+. +.+++.+|.++..+. .+ ....++++++.|... .+..+..+..+||
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~------~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~----~L~~l~~~~~~fd 161 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS------QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVS----KLNALLPPPEKRG 161 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT------TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHH----HHHHHCSCTTSCE
T ss_pred CCCceeEeCCcHHHHHHHcCC------CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHH----HHHHhcCCCCCcc
Confidence 456899999999999998884 479999999997742 22 223568888887542 3344443456799
Q ss_pred EEEeCCCC
Q 038391 116 VILSDMCP 123 (186)
Q Consensus 116 ~V~~d~~~ 123 (186)
+|+.|++.
T Consensus 162 LVfiDPPY 169 (283)
T 2oo3_A 162 LIFIDPSY 169 (283)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999873
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0019 Score=53.53 Aligned_cols=70 Identities=10% Similarity=0.102 Sum_probs=50.8
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeC
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d 120 (186)
+||||.||.|+++.-+-+. |. .|+++|+++.+.......-.-.++.+|+.++....+ ..+|+++..
T Consensus 2 kvidLFsG~GG~~~G~~~a------G~~~v~a~e~d~~a~~ty~~N~~~~~~~~DI~~i~~~~~-------~~~D~l~gg 68 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKA------GFRIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEF-------PKCDGIIGG 68 (331)
T ss_dssp EEEEESCTTCHHHHHHHHT------TCEEEEEEECCTTTHHHHHHHCCSEEEESCGGGCCGGGS-------CCCSEEECC
T ss_pred eEEEeCcCccHHHHHHHHC------CCEEEEEEeCCHHHHHHHHHHCCCCcccCChhhCCHhhC-------CcccEEEec
Confidence 6999999999999988775 34 578999999986542111123567899988765432 368999887
Q ss_pred CCCC
Q 038391 121 MCPS 124 (186)
Q Consensus 121 ~~~~ 124 (186)
.+|.
T Consensus 69 pPCQ 72 (331)
T 3ubt_Y 69 PPSQ 72 (331)
T ss_dssp CCGG
T ss_pred CCCC
Confidence 7653
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.032 Score=45.47 Aligned_cols=108 Identities=16% Similarity=0.122 Sum_probs=68.1
Q ss_pred CCEEEEEcccCChHHHHHHHH---hCCCCCCCeEEEEeCCCCCCCC----------------------------------
Q 038391 40 GSSVLDLGCAPGAWLQVACQS---LGPLDNGGSVVGIDVKKVKVPS---------------------------------- 82 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~---~~~~~~~~~v~gvDis~~~i~~---------------------------------- 82 (186)
.+.|+++|+-.|+.+..++.. +.+.+...+|+++|--+.+...
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 459999999999988886653 3221235799999944333210
Q ss_pred ---cC-CCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCC
Q 038391 83 ---LH-CDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVN 158 (186)
Q Consensus 83 ---~~-~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (186)
.. ...+++++.+++.+.....+.+. +..+||+|..|+. + .+-....++....
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~--~~~~~dlv~ID~D------~-------Y~~t~~~le~~~p--------- 205 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAEN--PQTVIALAYFDLD------L-------YEPTKAVLEAIRP--------- 205 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHC--TTCCEEEEEECCC------C-------HHHHHHHHHHHGG---------
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhC--CCCceEEEEEcCc------c-------cchHHHHHHHHHH---------
Confidence 00 13678999998865322222222 3467999999762 1 0113455666666
Q ss_pred CCCCCCCCcccccCcEEEEEEc
Q 038391 159 NSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 159 ~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
.|+|||++++--+
T Consensus 206 ---------~l~~GGvIv~DD~ 218 (257)
T 3tos_A 206 ---------YLTKGSIVAFDEL 218 (257)
T ss_dssp ---------GEEEEEEEEESST
T ss_pred ---------HhCCCcEEEEcCC
Confidence 8999999998654
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0018 Score=55.16 Aligned_cols=57 Identities=12% Similarity=-0.007 Sum_probs=45.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC---cCCCCCeEEEEeeecCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS---LHCDARVQTVSADVINL 99 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~---~~~~~~~~~~~~d~~~~ 99 (186)
++..|||+|+|+|.+|..+++... ..+|++||+.+..+.. .....+++++.+|+..+
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~----~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYC----PRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDW 117 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHC----CSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCH
T ss_pred CCCEEEEECCCCCHHHHHHHhhCC----CCEEEEEecCHHHHHHHHHhccCCCEEEEECCccch
Confidence 368999999999999999998753 2589999999987432 11346899999999654
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0035 Score=52.07 Aligned_cols=76 Identities=13% Similarity=0.067 Sum_probs=55.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCe---EEEEeCCCCCCCC-cCCCCCeEEEEeeecCCChhhHhhhCCCCCCc
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGS---VVGIDVKKVKVPS-LHCDARVQTVSADVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~---v~gvDis~~~i~~-~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~ 114 (186)
..-+++||.||.|+++..+.+. |.+ |+++|+++..... ........++.+|+.++....+..+ ..+
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~a------G~~~~~v~a~E~d~~a~~ty~~N~~~~~~~~~DI~~i~~~~i~~~----~~~ 84 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDL------GIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSVTQKHIQEW----GPF 84 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHT------TBCEEEEEEECCCHHHHHHHHHHTTTCEEEECCGGGCCHHHHHHT----CCC
T ss_pred CCCEEEEeCcCccHHHHHHHHC------CCccceEEEEECCHHHHHHHHHhCCCCceeCCChHHccHHHhccc----CCc
Confidence 3458999999999999988876 333 5999999987543 1122344677899998876555432 479
Q ss_pred cEEEeCCCCC
Q 038391 115 SVILSDMCPS 124 (186)
Q Consensus 115 D~V~~d~~~~ 124 (186)
|+++...+|.
T Consensus 85 Dll~ggpPCQ 94 (295)
T 2qrv_A 85 DLVIGGSPCN 94 (295)
T ss_dssp SEEEECCCCG
T ss_pred CEEEecCCCc
Confidence 9999988764
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0073 Score=50.54 Aligned_cols=103 Identities=16% Similarity=0.217 Sum_probs=57.4
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCC--eEEEEeCCCCC----CCC----------c----CCCC--CeEEEEeeec
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGG--SVVGIDVKKVK----VPS----------L----HCDA--RVQTVSADVI 97 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~--~v~gvDis~~~----i~~----------~----~~~~--~~~~~~~d~~ 97 (186)
.-+|||+|-|+|.......+.+...++.. +++.+|..+.. +.. . .... .+++..+|+.
T Consensus 97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~ 176 (308)
T 3vyw_A 97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR 176 (308)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence 34799999999987654443221001234 56677754422 000 0 0111 3445556654
Q ss_pred CCChhhHhhhCCCCCCccEEEeCC-CCCCC-CCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEE
Q 038391 98 NLPSNQVRALSPKQKGFSVILSDM-CPSVS-GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHL 175 (186)
Q Consensus 98 ~~~~~~l~~~~~~~~~~D~V~~d~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~l 175 (186)
. .+..+ ...+||.++.|+ +|... .+| ....+..+.+ +++|||+|
T Consensus 177 ~----~l~~l--~~~~~Da~flDgFsP~kNPeLW----------s~e~f~~l~~------------------~~~pgg~l 222 (308)
T 3vyw_A 177 K----RIKEV--ENFKADAVFHDAFSPYKNPELW----------TLDFLSLIKE------------------RIDEKGYW 222 (308)
T ss_dssp H----HGGGC--CSCCEEEEEECCSCTTTSGGGG----------SHHHHHHHHT------------------TEEEEEEE
T ss_pred H----HHhhh--cccceeEEEeCCCCcccCcccC----------CHHHHHHHHH------------------HhCCCcEE
Confidence 3 22233 235899999997 22222 223 3367888887 99999998
Q ss_pred E
Q 038391 176 V 176 (186)
Q Consensus 176 v 176 (186)
+
T Consensus 223 a 223 (308)
T 3vyw_A 223 V 223 (308)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0059 Score=49.28 Aligned_cols=37 Identities=30% Similarity=0.334 Sum_probs=32.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKV 80 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i 80 (186)
++|..|||.+||+|..+..+.+. +.+++|+|+++..+
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~------gr~~ig~e~~~~~~ 247 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKL------GRNFIGCDMNAEYV 247 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHT------TCEEEEEESCHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc------CCeEEEEeCCHHHH
Confidence 78999999999999888887775 57999999998764
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0026 Score=53.72 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=52.9
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-cCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeC
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-LHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d 120 (186)
+++|+.||.|+++.-+.+.--. ...|+++|+++...+- ........++.+|+.++....+. ...+|+++..
T Consensus 5 ~~idLFaG~GG~~~G~~~aG~~---~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~-----~~~~D~l~gg 76 (333)
T 4h0n_A 5 KILELYSGIGGMHCAWKESGLD---GEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQVIK-----KWNVDTILMS 76 (333)
T ss_dssp EEEEETCTTTHHHHHHHHHTCS---EEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHH-----HTTCCEEEEC
T ss_pred EEEEECcCccHHHHHHHHcCCC---ceEEEEEeCCHHHHHHHHHhCCCCceeccccccCCHHHhc-----cCCCCEEEec
Confidence 7999999999999999876100 1358899999988543 12223345677899888765442 2368999998
Q ss_pred CCCC
Q 038391 121 MCPS 124 (186)
Q Consensus 121 ~~~~ 124 (186)
.+|.
T Consensus 77 pPCQ 80 (333)
T 4h0n_A 77 PPCQ 80 (333)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7764
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0053 Score=51.55 Aligned_cols=72 Identities=10% Similarity=0.094 Sum_probs=49.2
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-CCCCeEEEEeeecCCChhhHhhhCCCCCCccEEE
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-CDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~ 118 (186)
+.+++||+||.|+++..+.+. +-..|+++|+++..+.... ...... .+|+.++....+ ..+|+|+
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a-----G~~~v~~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~~~-------~~~D~l~ 76 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC-----GAECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTI-------PDHDILC 76 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT-----TCEEEEEECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGS-------CCCSEEE
T ss_pred CCcEEEECCCcCHHHHHHHHC-----CCeEEEEEeCCHHHHHHHHHHcCCCC--cCCHHHcCHhhC-------CCCCEEE
Confidence 468999999999999999876 1246889999998754310 001111 578777654322 3599999
Q ss_pred eCCCCCC
Q 038391 119 SDMCPSV 125 (186)
Q Consensus 119 ~d~~~~~ 125 (186)
.+.+|..
T Consensus 77 ~gpPCQ~ 83 (327)
T 2c7p_A 77 AGFPCQA 83 (327)
T ss_dssp EECCCTT
T ss_pred ECCCCCC
Confidence 9887643
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0037 Score=52.64 Aligned_cols=78 Identities=6% Similarity=-0.043 Sum_probs=51.9
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeE-EEEeCCCCCCCCcC-CCCCeEEEEeeecCCChhhHhhhCCCCCCccEE
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSV-VGIDVKKVKVPSLH-CDARVQTVSADVINLPSNQVRALSPKQKGFSVI 117 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v-~gvDis~~~i~~~~-~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V 117 (186)
.-+++|+.||.|+++..+.+.--. ...| +++|+++....-.. ..... ++++|+.++....+.. ..+|++
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~---~~~v~~a~e~d~~a~~ty~~N~~~~-~~~~DI~~~~~~~i~~-----~~~Dil 80 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSIN---INATFIPFDINEIANKIYSKNFKEE-VQVKNLDSISIKQIES-----LNCNTW 80 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCC---CCEEEEEECCCHHHHHHHHHHHCCC-CBCCCTTTCCHHHHHH-----TCCCEE
T ss_pred CCEEEEECCChhHHHHHHHHcCCC---ceEEEEEEECCHHHHHHHHHHCCCC-cccCChhhcCHHHhcc-----CCCCEE
Confidence 348999999999999998875100 1246 79999998754311 11111 5578888877654422 269999
Q ss_pred EeCCCCCCC
Q 038391 118 LSDMCPSVS 126 (186)
Q Consensus 118 ~~d~~~~~~ 126 (186)
+...+|..-
T Consensus 81 ~ggpPCQ~f 89 (327)
T 3qv2_A 81 FMSPPCQPY 89 (327)
T ss_dssp EECCCCTTC
T ss_pred EecCCccCc
Confidence 998776543
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0083 Score=51.11 Aligned_cols=76 Identities=22% Similarity=0.298 Sum_probs=48.0
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCC--hhhHhhhCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLP--SNQVRALSPKQK 112 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~--~~~l~~~~~~~~ 112 (186)
.+++|++||.+|||+ |..+..+++.++. .+|+++|.++..++..... ...++ |..+.. ...+..+. .+.
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga----~~Vi~~~~~~~~~~~a~~l-Ga~~i--~~~~~~~~~~~~~~~~-~g~ 253 (398)
T 2dph_A 182 GVKPGSHVYIAGAGPVGRCAAAGARLLGA----ACVIVGDQNPERLKLLSDA-GFETI--DLRNSAPLRDQIDQIL-GKP 253 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHTC----SEEEEEESCHHHHHHHHTT-TCEEE--ETTSSSCHHHHHHHHH-SSS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEEcCCHHHHHHHHHc-CCcEE--cCCCcchHHHHHHHHh-CCC
Confidence 478899999999876 7777788887631 3899999998775542221 12222 332222 22333333 234
Q ss_pred CccEEEe
Q 038391 113 GFSVILS 119 (186)
Q Consensus 113 ~~D~V~~ 119 (186)
.+|+|+-
T Consensus 254 g~Dvvid 260 (398)
T 2dph_A 254 EVDCGVD 260 (398)
T ss_dssp CEEEEEE
T ss_pred CCCEEEE
Confidence 7999987
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0087 Score=50.37 Aligned_cols=104 Identities=13% Similarity=0.220 Sum_probs=62.1
Q ss_pred CCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCC-hhhHhhhCCCCC
Q 038391 35 KLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLP-SNQVRALSPKQK 112 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~-~~~l~~~~~~~~ 112 (186)
..+++|++||-+|||+ |.....+++.++. .+|+++|.++..++......--.++ |..+.. ...+.++.. +
T Consensus 186 ~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga----~~Vi~~~~~~~~~~~a~~lGa~~vi--~~~~~~~~~~~~~~~~-g- 257 (371)
T 1f8f_A 186 LKVTPASSFVTWGAGAVGLSALLAAKVCGA----SIIIAVDIVESRLELAKQLGATHVI--NSKTQDPVAAIKEITD-G- 257 (371)
T ss_dssp TCCCTTCEEEEESCSHHHHHHHHHHHHHTC----SEEEEEESCHHHHHHHHHHTCSEEE--ETTTSCHHHHHHHHTT-S-
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEECCCHHHHHHHHHcCCCEEe--cCCccCHHHHHHHhcC-C-
Confidence 3478899999999876 6777777777631 3799999998775442111101111 222222 123444432 3
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
.+|+|+.. .+. ...+..+.+ .|+++|++++--..
T Consensus 258 g~D~vid~-----~g~------------~~~~~~~~~------------------~l~~~G~iv~~G~~ 291 (371)
T 1f8f_A 258 GVNFALES-----TGS------------PEILKQGVD------------------ALGILGKIAVVGAP 291 (371)
T ss_dssp CEEEEEEC-----SCC------------HHHHHHHHH------------------TEEEEEEEEECCCC
T ss_pred CCcEEEEC-----CCC------------HHHHHHHHH------------------HHhcCCEEEEeCCC
Confidence 79999872 221 124455555 89999999875443
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.011 Score=49.41 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=33.2
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.+++|++||-+|+|+ |..+..+++.. +.+|+++|.++..++.
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~-----Ga~Vi~~~~~~~~~~~ 215 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAM-----GAEVSVFARNEHKKQD 215 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHT-----TCEEEEECSSSTTHHH
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHC-----CCeEEEEeCCHHHHHH
Confidence 478999999999865 66666677665 5699999999988654
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.27 E-value=0.01 Score=49.76 Aligned_cols=42 Identities=24% Similarity=0.404 Sum_probs=32.4
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~ 82 (186)
.+++|++||-+|+|+ |..+..+++.+ +. +|+++|.++..++.
T Consensus 168 ~~~~g~~VlV~GaG~vG~~aiqlak~~-----Ga~~Vi~~~~~~~~~~~ 211 (356)
T 1pl8_A 168 GVTLGHKVLVCGAGPIGMVTLLVAKAM-----GAAQVVVTDLSATRLSK 211 (356)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT-----TCSEEEEEESCHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCEEEEECCCHHHHHH
Confidence 478899999999875 66667777765 35 89999999876543
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.04 Score=46.42 Aligned_cols=104 Identities=20% Similarity=0.278 Sum_probs=63.5
Q ss_pred CCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeec--CCC-hhhHhhhCCC
Q 038391 35 KLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVI--NLP-SNQVRALSPK 110 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~--~~~-~~~l~~~~~~ 110 (186)
..+++|++||-+|+|+ |..+..+++..+. .+|+++|.++..++......-..+ .|.. ... ...+.++..
T Consensus 189 ~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga----~~Vi~~~~~~~~~~~a~~lGa~~v--i~~~~~~~~~~~~i~~~~~- 261 (378)
T 3uko_A 189 AKVEPGSNVAIFGLGTVGLAVAEGAKTAGA----SRIIGIDIDSKKYETAKKFGVNEF--VNPKDHDKPIQEVIVDLTD- 261 (378)
T ss_dssp TCCCTTCCEEEECCSHHHHHHHHHHHHHTC----SCEEEECSCTTHHHHHHTTTCCEE--ECGGGCSSCHHHHHHHHTT-
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEEcCCHHHHHHHHHcCCcEE--EccccCchhHHHHHHHhcC-
Confidence 3478899999999875 6777777777632 389999999988654322111111 2222 111 233444442
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccC-cEEEEEEcc
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPG-GHLVIKLLE 181 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lkpg-G~lvi~~~~ 181 (186)
+.+|+|+-. .+. ...+..+.+ .|++| |++++--..
T Consensus 262 -gg~D~vid~-----~g~------------~~~~~~~~~------------------~l~~g~G~iv~~G~~ 297 (378)
T 3uko_A 262 -GGVDYSFEC-----IGN------------VSVMRAALE------------------CCHKGWGTSVIVGVA 297 (378)
T ss_dssp -SCBSEEEEC-----SCC------------HHHHHHHHH------------------TBCTTTCEEEECSCC
T ss_pred -CCCCEEEEC-----CCC------------HHHHHHHHH------------------HhhccCCEEEEEccc
Confidence 389999872 221 134555555 89996 998875543
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.23 E-value=0.016 Score=48.41 Aligned_cols=42 Identities=24% Similarity=0.344 Sum_probs=31.5
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.+++|++||-+|+|+ |..+..+++.+ +.+|+++|.++..++.
T Consensus 165 ~~~~g~~VlV~GaG~vG~~a~qla~~~-----Ga~Vi~~~~~~~~~~~ 207 (352)
T 1e3j_A 165 GVQLGTTVLVIGAGPIGLVSVLAAKAY-----GAFVVCTARSPRRLEV 207 (352)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT-----TCEEEEEESCHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-----CCEEEEEcCCHHHHHH
Confidence 368899999999864 55666666665 4679999998877543
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.17 E-value=0.016 Score=47.64 Aligned_cols=68 Identities=15% Similarity=0.119 Sum_probs=41.1
Q ss_pred CeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCccc---------chHHHHHHHHHHHHHHcCCcccCCCCC
Q 038391 88 RVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTK---------DAALSVELGMRAVDLALGPAALASPVN 158 (186)
Q Consensus 88 ~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (186)
+.+++++|+.+. +..+ ++++||+|++|++......... ....-......++.++.+
T Consensus 21 ~~~i~~gD~~~~----l~~l--~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~r--------- 85 (297)
T 2zig_A 21 VHRLHVGDAREV----LASF--PEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFR--------- 85 (297)
T ss_dssp CEEEEESCHHHH----HTTS--CTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred CCEEEECcHHHH----HhhC--CCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHH---------
Confidence 568889988652 1111 3579999999987543211100 011112223456677777
Q ss_pred CCCCCCCCcccccCcEEEEEE
Q 038391 159 NSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 159 ~~~~~~~~~~LkpgG~lvi~~ 179 (186)
+|||||.+++.+
T Consensus 86 ---------vLk~~G~l~i~~ 97 (297)
T 2zig_A 86 ---------LLVPGGRLVIVV 97 (297)
T ss_dssp ---------HEEEEEEEEEEE
T ss_pred ---------HcCCCcEEEEEE
Confidence 999999998875
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=95.12 E-value=0.018 Score=43.77 Aligned_cols=78 Identities=18% Similarity=0.196 Sum_probs=42.9
Q ss_pred CCCCCCCEEEEEccc--CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh-hhHhhhCCCC
Q 038391 35 KLIKPGSSVLDLGCA--PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQ 111 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG--~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~-~~l~~~~~~~ 111 (186)
..+++|++||..|++ .|.....++... +.+|+++|.++..++..... .... ..|..+... ..+.+... +
T Consensus 34 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~-----G~~V~~~~~~~~~~~~~~~~-g~~~-~~d~~~~~~~~~~~~~~~-~ 105 (198)
T 1pqw_A 34 GRLSPGERVLIHSATGGVGMAAVSIAKMI-----GARIYTTAGSDAKREMLSRL-GVEY-VGDSRSVDFADEILELTD-G 105 (198)
T ss_dssp SCCCTTCEEEETTTTSHHHHHHHHHHHHH-----TCEEEEEESSHHHHHHHHTT-CCSE-EEETTCSTHHHHHHHHTT-T
T ss_pred hCCCCCCEEEEeeCCChHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHc-CCCE-EeeCCcHHHHHHHHHHhC-C
Confidence 347889999999853 244444444443 57999999987664321111 1111 124433321 23333332 3
Q ss_pred CCccEEEeC
Q 038391 112 KGFSVILSD 120 (186)
Q Consensus 112 ~~~D~V~~d 120 (186)
..+|+++.+
T Consensus 106 ~~~D~vi~~ 114 (198)
T 1pqw_A 106 YGVDVVLNS 114 (198)
T ss_dssp CCEEEEEEC
T ss_pred CCCeEEEEC
Confidence 479999974
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.0098 Score=49.49 Aligned_cols=104 Identities=17% Similarity=0.267 Sum_probs=63.3
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCc
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~ 114 (186)
.+++|++||-+|+|+ |..+..+++..+ +.+|+++|.+++.++......-..++ |........+.++. .+..+
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g----~~~Vi~~~~~~~~~~~~~~lGa~~~i--~~~~~~~~~v~~~t-~g~g~ 240 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVS----AARVIAVDLDDDRLALAREVGADAAV--KSGAGAADAIRELT-GGQGA 240 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHC----CCEEEEEESCHHHHHHHHHTTCSEEE--ECSTTHHHHHHHHH-GGGCE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC----CCEEEEEcCCHHHHHHHHHcCCCEEE--cCCCcHHHHHHHHh-CCCCC
Confidence 478899999999875 667777777763 47999999999875542211111122 11111122333333 24589
Q ss_pred cEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 115 SVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 115 D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
|+|+-. .+. ...+..+.+ .|+++|++++--..
T Consensus 241 d~v~d~-----~G~------------~~~~~~~~~------------------~l~~~G~iv~~G~~ 272 (345)
T 3jv7_A 241 TAVFDF-----VGA------------QSTIDTAQQ------------------VVAVDGHISVVGIH 272 (345)
T ss_dssp EEEEES-----SCC------------HHHHHHHHH------------------HEEEEEEEEECSCC
T ss_pred eEEEEC-----CCC------------HHHHHHHHH------------------HHhcCCEEEEECCC
Confidence 999872 221 124555555 89999999876443
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.028 Score=46.81 Aligned_cols=70 Identities=13% Similarity=0.181 Sum_probs=44.8
Q ss_pred CCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCC---cccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCC
Q 038391 87 ARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGI---TTKDAALSVELGMRAVDLALGPAALASPVNNSDSS 163 (186)
Q Consensus 87 ~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (186)
.+..++++|+... +..+ ++++||+|++|++...... ....+..-.......+.++.+
T Consensus 13 ~~~~ii~gD~~~~----l~~l--~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~r-------------- 72 (323)
T 1boo_A 13 SNGSMYIGDSLEL----LESF--PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNK-------------- 72 (323)
T ss_dssp SSEEEEESCHHHH----GGGS--CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHH--------------
T ss_pred CCceEEeCcHHHH----HhhC--CCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHH--------------
Confidence 4577888987642 1112 4679999999987644321 111122223345677777777
Q ss_pred CCCcccccCcEEEEEEc
Q 038391 164 TDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 164 ~~~~~LkpgG~lvi~~~ 180 (186)
+|||||.+++.+=
T Consensus 73 ----vLk~~G~i~i~~~ 85 (323)
T 1boo_A 73 ----KLKPDGSFVVDFG 85 (323)
T ss_dssp ----HEEEEEEEEEEEC
T ss_pred ----HCcCCcEEEEEEC
Confidence 9999999998753
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.023 Score=46.95 Aligned_cols=103 Identities=21% Similarity=0.174 Sum_probs=62.0
Q ss_pred HcCCCCCCCEEEEEccc--CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-CCCCCeEEEEeeecCCC-hhhHhhhC
Q 038391 33 QYKLIKPGSSVLDLGCA--PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-HCDARVQTVSADVINLP-SNQVRALS 108 (186)
Q Consensus 33 ~~~~~~~~~~vLDlGcG--~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-~~~~~~~~~~~d~~~~~-~~~l~~~~ 108 (186)
....+++|++||-.|++ .|..+..+++.. +.+|+++|.++..++.. ... .... ..|..+.. ...+.+..
T Consensus 143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-----Ga~Vi~~~~~~~~~~~~~~~~-g~~~-~~~~~~~~~~~~~~~~~ 215 (336)
T 4b7c_A 143 DVGQPKNGETVVISGAAGAVGSVAGQIARLK-----GCRVVGIAGGAEKCRFLVEEL-GFDG-AIDYKNEDLAAGLKREC 215 (336)
T ss_dssp HTTCCCTTCEEEESSTTSHHHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHHTT-CCSE-EEETTTSCHHHHHHHHC
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHHHc-CCCE-EEECCCHHHHHHHHHhc
Confidence 33457899999999983 355666666654 57999999988765432 111 1111 12333322 12344443
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
++.+|+|+... +. ..+..+.+ .|+++|++++--.
T Consensus 216 --~~~~d~vi~~~-----g~-------------~~~~~~~~------------------~l~~~G~iv~~G~ 249 (336)
T 4b7c_A 216 --PKGIDVFFDNV-----GG-------------EILDTVLT------------------RIAFKARIVLCGA 249 (336)
T ss_dssp --TTCEEEEEESS-----CH-------------HHHHHHHT------------------TEEEEEEEEECCC
T ss_pred --CCCceEEEECC-----Cc-------------chHHHHHH------------------HHhhCCEEEEEee
Confidence 35799998732 21 24555566 8999999987543
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.19 Score=38.16 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=52.5
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEe
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILS 119 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~ 119 (186)
..-|||+|-|+|..--++.+.++ +-.|+.+|-.-..-...- -+.-.++++|+.......++.+ +.+.-++.+
T Consensus 41 ~GpVlElGLGNGRTydHLRe~~P----~R~I~vfDR~~~~hp~~~-P~~e~~ilGdi~~tL~~~~~r~---g~~a~LaHa 112 (174)
T 3iht_A 41 SGPVYELGLGNGRTYHHLRQHVQ----GREIYVFERAVASHPDST-PPEAQLILGDIRETLPATLERF---GATASLVHA 112 (174)
T ss_dssp CSCEEEECCTTCHHHHHHHHHCC----SSCEEEEESSCCCCGGGC-CCGGGEEESCHHHHHHHHHHHH---CSCEEEEEE
T ss_pred CCceEEecCCCChhHHHHHHhCC----CCcEEEEEeeeccCCCCC-CchHheecccHHHHHHHHHHhc---CCceEEEEe
Confidence 45899999999999999999986 489999997655432211 1234678898875432222223 568889999
Q ss_pred CCC
Q 038391 120 DMC 122 (186)
Q Consensus 120 d~~ 122 (186)
|..
T Consensus 113 D~G 115 (174)
T 3iht_A 113 DLG 115 (174)
T ss_dssp CCC
T ss_pred ecC
Confidence 863
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.012 Score=48.96 Aligned_cols=42 Identities=21% Similarity=0.284 Sum_probs=34.2
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.+++|++||-.|+|+ |..+..+++.. +.+|+++|.++..++.
T Consensus 163 ~~~~g~~VlV~GaG~vG~~a~qla~~~-----Ga~Vi~~~~~~~~~~~ 205 (340)
T 3s2e_A 163 DTRPGQWVVISGIGGLGHVAVQYARAM-----GLRVAAVDIDDAKLNL 205 (340)
T ss_dssp TCCTTSEEEEECCSTTHHHHHHHHHHT-----TCEEEEEESCHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-----CCeEEEEeCCHHHHHH
Confidence 478899999999976 77777788776 4699999999877544
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.031 Score=46.38 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=47.7
Q ss_pred CCCCCCCEEEEEcccC--ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC-CCCeEEEEeeecCCC-hhhHhhhCCC
Q 038391 35 KLIKPGSSVLDLGCAP--GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC-DARVQTVSADVINLP-SNQVRALSPK 110 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~--G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~-~~~~~~~~~d~~~~~-~~~l~~~~~~ 110 (186)
..+++|++||-.|+|. |..+..+++.. +.+|+++|.++..++.... ... .. .|..+.. ...+.++. .
T Consensus 140 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~-----Ga~Vi~~~~~~~~~~~~~~lga~-~~--~~~~~~~~~~~~~~~~-~ 210 (340)
T 3gms_A 140 LNLQRNDVLLVNACGSAIGHLFAQLSQIL-----NFRLIAVTRNNKHTEELLRLGAA-YV--IDTSTAPLYETVMELT-N 210 (340)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHH-----TCEEEEEESSSTTHHHHHHHTCS-EE--EETTTSCHHHHHHHHT-T
T ss_pred cccCCCCEEEEeCCccHHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHhCCCc-EE--EeCCcccHHHHHHHHh-C
Confidence 4578899999999874 66777777765 5799999999887544211 111 11 1322222 12334443 2
Q ss_pred CCCccEEEe
Q 038391 111 QKGFSVILS 119 (186)
Q Consensus 111 ~~~~D~V~~ 119 (186)
+..+|+|+.
T Consensus 211 ~~g~Dvvid 219 (340)
T 3gms_A 211 GIGADAAID 219 (340)
T ss_dssp TSCEEEEEE
T ss_pred CCCCcEEEE
Confidence 458999987
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.02 Score=47.46 Aligned_cols=104 Identities=16% Similarity=0.192 Sum_probs=61.2
Q ss_pred CCCCCCEEEEEcccCC-hHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCC-hhhHhhhCCCCCC
Q 038391 36 LIKPGSSVLDLGCAPG-AWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLP-SNQVRALSPKQKG 113 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G-~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~-~~~l~~~~~~~~~ 113 (186)
.+++|++||-+|+|++ .+...+++..+ +.+|+++|.++..+.......-..++ |..+.. ...+.+.. .+..
T Consensus 160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~----g~~Vi~~~~~~~r~~~~~~~Ga~~~i--~~~~~~~~~~v~~~t-~g~g 232 (348)
T 4eez_A 160 GVKPGDWQVIFGAGGLGNLAIQYAKNVF----GAKVIAVDINQDKLNLAKKIGADVTI--NSGDVNPVDEIKKIT-GGLG 232 (348)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTS----CCEEEEEESCHHHHHHHHHTTCSEEE--EC-CCCHHHHHHHHT-TSSC
T ss_pred CCCCCCEEEEEcCCCccHHHHHHHHHhC----CCEEEEEECcHHHhhhhhhcCCeEEE--eCCCCCHHHHhhhhc-CCCC
Confidence 3688999999999874 45555555543 57999999999875432211111111 222222 23344444 3557
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+|.++.+. + ....+..+.+ .|+++|++++....
T Consensus 233 ~d~~~~~~-----~------------~~~~~~~~~~------------------~l~~~G~~v~~g~~ 265 (348)
T 4eez_A 233 VQSAIVCA-----V------------ARIAFEQAVA------------------SLKPMGKMVAVAVP 265 (348)
T ss_dssp EEEEEECC-----S------------CHHHHHHHHH------------------TEEEEEEEEECCCC
T ss_pred ceEEEEec-----c------------Ccchhheehe------------------eecCCceEEEEecc
Confidence 88887632 1 1134455555 89999998876543
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.061 Score=45.15 Aligned_cols=77 Identities=18% Similarity=0.297 Sum_probs=46.0
Q ss_pred CCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecC--CC-hhhHhhhCCC
Q 038391 35 KLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVIN--LP-SNQVRALSPK 110 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~--~~-~~~l~~~~~~ 110 (186)
..+++|++||-+|+|+ |..+..+++.++. .+|+++|.++..++...... ...+ .|..+ .. ...+.+...
T Consensus 187 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga----~~Vi~~~~~~~~~~~a~~lG-a~~v-i~~~~~~~~~~~~i~~~t~- 259 (373)
T 1p0f_A 187 AKVTPGSTCAVFGLGGVGFSAIVGCKAAGA----SRIIGVGTHKDKFPKAIELG-ATEC-LNPKDYDKPIYEVICEKTN- 259 (373)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHTC----SEEEEECSCGGGHHHHHHTT-CSEE-ECGGGCSSCHHHHHHHHTT-
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEECCCHHHHHHHHHcC-CcEE-EecccccchHHHHHHHHhC-
Confidence 3478899999999865 6666777777631 38999999988754422111 1111 12221 11 223444432
Q ss_pred CCCccEEEe
Q 038391 111 QKGFSVILS 119 (186)
Q Consensus 111 ~~~~D~V~~ 119 (186)
+.+|+|+-
T Consensus 260 -gg~Dvvid 267 (373)
T 1p0f_A 260 -GGVDYAVE 267 (373)
T ss_dssp -SCBSEEEE
T ss_pred -CCCCEEEE
Confidence 38999987
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.039 Score=45.89 Aligned_cols=101 Identities=17% Similarity=0.114 Sum_probs=59.4
Q ss_pred CCCCCCEEEEEccc--CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecC-CC-hhhHhhhCCCC
Q 038391 36 LIKPGSSVLDLGCA--PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVIN-LP-SNQVRALSPKQ 111 (186)
Q Consensus 36 ~~~~~~~vLDlGcG--~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~-~~-~~~l~~~~~~~ 111 (186)
.+++|++||-.|++ .|..+..++... +.+|+++|.++..++..... .... ..|..+ .. ...+..... +
T Consensus 166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-----Ga~V~~~~~~~~~~~~~~~~-g~~~-~~d~~~~~~~~~~~~~~~~-~ 237 (347)
T 2hcy_A 166 NLMAGHWVAISGAAGGLGSLAVQYAKAM-----GYRVLGIDGGEGKEELFRSI-GGEV-FIDFTKEKDIVGAVLKATD-G 237 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHT-----TCEEEEEECSTTHHHHHHHT-TCCE-EEETTTCSCHHHHHHHHHT-S
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHC-----CCcEEEEcCCHHHHHHHHHc-CCce-EEecCccHhHHHHHHHHhC-C
Confidence 47889999999983 345555555543 57999999988765432111 1111 124432 22 122333322 3
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
.+|+|+... +. ...+..+.+ .|+++|++++--.
T Consensus 238 -~~D~vi~~~-----g~------------~~~~~~~~~------------------~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 238 -GAHGVINVS-----VS------------EAAIEASTR------------------YVRANGTTVLVGM 270 (347)
T ss_dssp -CEEEEEECS-----SC------------HHHHHHHTT------------------SEEEEEEEEECCC
T ss_pred -CCCEEEECC-----Cc------------HHHHHHHHH------------------HHhcCCEEEEEeC
Confidence 799999743 21 135566676 8999999886543
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=94.38 E-value=0.073 Score=44.66 Aligned_cols=76 Identities=17% Similarity=0.343 Sum_probs=45.2
Q ss_pred CCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCCcCCCCCeEEEEeeecC--CC-hhhHhhhCC
Q 038391 35 KLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPSLHCDARVQTVSADVIN--LP-SNQVRALSP 109 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~~~~~~~~~~~~~d~~~--~~-~~~l~~~~~ 109 (186)
..+++|++||-+|+|+ |.....+++.+ +. +|+++|.++..++......--.+ .|..+ .. ...+.++..
T Consensus 187 ~~~~~g~~VlV~GaG~vG~~a~qla~~~-----Ga~~Vi~~~~~~~~~~~~~~lGa~~v--i~~~~~~~~~~~~~~~~~~ 259 (374)
T 2jhf_A 187 AKVTQGSTCAVFGLGGVGLSVIMGCKAA-----GAARIIGVDINKDKFAKAKEVGATEC--VNPQDYKKPIQEVLTEMSN 259 (374)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHT-----TCSEEEEECSCGGGHHHHHHTTCSEE--ECGGGCSSCHHHHHHHHTT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCeEEEEcCCHHHHHHHHHhCCceE--ecccccchhHHHHHHHHhC
Confidence 3478899999999765 55666666665 35 89999999887544221110111 23322 11 123444432
Q ss_pred CCCCccEEEe
Q 038391 110 KQKGFSVILS 119 (186)
Q Consensus 110 ~~~~~D~V~~ 119 (186)
+.+|+|+.
T Consensus 260 --~g~D~vid 267 (374)
T 2jhf_A 260 --GGVDFSFE 267 (374)
T ss_dssp --SCBSEEEE
T ss_pred --CCCcEEEE
Confidence 37999987
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.38 E-value=0.066 Score=44.93 Aligned_cols=43 Identities=23% Similarity=0.480 Sum_probs=32.5
Q ss_pred CCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCC
Q 038391 35 KLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPS 82 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~ 82 (186)
..+++|++||-+|+|+ |..+..+++.+ +. +|+++|.++..++.
T Consensus 188 ~~~~~g~~VlV~GaG~vG~~a~qla~~~-----Ga~~Vi~~~~~~~~~~~ 232 (374)
T 1cdo_A 188 AKVEPGSTCAVFGLGAVGLAAVMGCHSA-----GAKRIIAVDLNPDKFEK 232 (374)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHT-----TCSEEEEECSCGGGHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCEEEEEcCCHHHHHH
Confidence 3478899999999764 55666666665 35 89999999887554
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=94.36 E-value=0.066 Score=44.96 Aligned_cols=43 Identities=26% Similarity=0.511 Sum_probs=32.7
Q ss_pred CCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCC
Q 038391 35 KLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPS 82 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~ 82 (186)
..+++|++||-+|+|+ |..+..+++.+ +. +|+++|.++..++.
T Consensus 191 ~~~~~g~~VlV~GaG~vG~~aiqlak~~-----Ga~~Vi~~~~~~~~~~~ 235 (376)
T 1e3i_A 191 AKVTPGSTCAVFGLGCVGLSAIIGCKIA-----GASRIIAIDINGEKFPK 235 (376)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHT-----TCSEEEEECSCGGGHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCeEEEEcCCHHHHHH
Confidence 3478899999999865 56666677765 35 89999999887544
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.036 Score=45.84 Aligned_cols=106 Identities=20% Similarity=0.214 Sum_probs=62.0
Q ss_pred CCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh-hhHhhhCCCCC
Q 038391 35 KLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQK 112 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~-~~l~~~~~~~~ 112 (186)
..+++|++||-.|+|+ |.++..+++.++ ...++++|.++..++..+...-... .|..+... +.+..+. ..+
T Consensus 156 ~~~~~g~~VlV~GaG~vG~~aiq~ak~~G----~~~vi~~~~~~~k~~~a~~lGa~~~--i~~~~~~~~~~~~~~~-~~~ 228 (346)
T 4a2c_A 156 AQGCENKNVIIIGAGTIGLLAIQCAVALG----AKSVTAIDISSEKLALAKSFGAMQT--FNSSEMSAPQMQSVLR-ELR 228 (346)
T ss_dssp TTCCTTSEEEEECCSHHHHHHHHHHHHTT----CSEEEEEESCHHHHHHHHHTTCSEE--EETTTSCHHHHHHHHG-GGC
T ss_pred hccCCCCEEEEECCCCcchHHHHHHHHcC----CcEEEEEechHHHHHHHHHcCCeEE--EeCCCCCHHHHHHhhc-ccC
Confidence 3468899999999876 456666677764 2467899999887544221111112 23333322 2222332 246
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
.+|+|+.. .+ ....++.+.+ +|+++|++++--..+
T Consensus 229 g~d~v~d~-----~G------------~~~~~~~~~~------------------~l~~~G~~v~~g~~~ 263 (346)
T 4a2c_A 229 FNQLILET-----AG------------VPQTVELAVE------------------IAGPHAQLALVGTLH 263 (346)
T ss_dssp SSEEEEEC-----SC------------SHHHHHHHHH------------------HCCTTCEEEECCCCS
T ss_pred Cccccccc-----cc------------ccchhhhhhh------------------eecCCeEEEEEeccC
Confidence 78988862 22 1134555555 899999998765443
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.31 E-value=0.024 Score=48.09 Aligned_cols=77 Identities=21% Similarity=0.280 Sum_probs=47.3
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCC--hhhHhhhCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLP--SNQVRALSPKQK 112 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~--~~~l~~~~~~~~ 112 (186)
.+++|++||-+|||+ |.++..+++.++. .+|+++|.++..++..... .... .|..+.. ...+.++. .+.
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga----~~Vi~~~~~~~~~~~a~~l-Ga~~--i~~~~~~~~~~~v~~~t-~g~ 253 (398)
T 1kol_A 182 GVGPGSTVYVAGAGPVGLAAAASARLLGA----AVVIVGDLNPARLAHAKAQ-GFEI--ADLSLDTPLHEQIAALL-GEP 253 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC----SEEEEEESCHHHHHHHHHT-TCEE--EETTSSSCHHHHHHHHH-SSS
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC----CeEEEEcCCHHHHHHHHHc-CCcE--EccCCcchHHHHHHHHh-CCC
Confidence 478899999999876 6677777777631 3799999998775542211 1222 2332221 22333333 245
Q ss_pred CccEEEeC
Q 038391 113 GFSVILSD 120 (186)
Q Consensus 113 ~~D~V~~d 120 (186)
.+|+|+-.
T Consensus 254 g~Dvvid~ 261 (398)
T 1kol_A 254 EVDCAVDA 261 (398)
T ss_dssp CEEEEEEC
T ss_pred CCCEEEEC
Confidence 79999873
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.084 Score=43.62 Aligned_cols=100 Identities=19% Similarity=0.230 Sum_probs=59.8
Q ss_pred CCCCCCCEEEEEcc--cCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC--CCCCeEEEEeeecCC-C-hhhHhhhC
Q 038391 35 KLIKPGSSVLDLGC--APGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH--CDARVQTVSADVINL-P-SNQVRALS 108 (186)
Q Consensus 35 ~~~~~~~~vLDlGc--G~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~--~~~~~~~~~~d~~~~-~-~~~l~~~~ 108 (186)
..+++|++||-.|+ |.|.....+++.. +.+|+++|.++..++... .... . ..|..+. . ...+....
T Consensus 151 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-----G~~V~~~~~~~~~~~~~~~~~g~~--~-~~d~~~~~~~~~~~~~~~ 222 (345)
T 2j3h_A 151 CSPKEGETVYVSAASGAVGQLVGQLAKMM-----GCYVVGSAGSKEKVDLLKTKFGFD--D-AFNYKEESDLTAALKRCF 222 (345)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHHTSCCS--E-EEETTSCSCSHHHHHHHC
T ss_pred hCCCCCCEEEEECCCcHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHHHcCCc--e-EEecCCHHHHHHHHHHHh
Confidence 34788999999997 2355555555554 579999999876644321 2111 1 1243332 1 22344443
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
++.+|+|+... + . ..+..+.+ .|+++|++++--.
T Consensus 223 --~~~~d~vi~~~-----g------------~-~~~~~~~~------------------~l~~~G~~v~~G~ 256 (345)
T 2j3h_A 223 --PNGIDIYFENV-----G------------G-KMLDAVLV------------------NMNMHGRIAVCGM 256 (345)
T ss_dssp --TTCEEEEEESS-----C------------H-HHHHHHHT------------------TEEEEEEEEECCC
T ss_pred --CCCCcEEEECC-----C------------H-HHHHHHHH------------------HHhcCCEEEEEcc
Confidence 25799999732 2 1 24555566 8999999987543
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=94.26 E-value=0.0072 Score=50.52 Aligned_cols=77 Identities=18% Similarity=0.202 Sum_probs=45.3
Q ss_pred CCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCCcCCCCCeEEEEeeecCCC-hhhHhhhCCCC
Q 038391 35 KLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPSLHCDARVQTVSADVINLP-SNQVRALSPKQ 111 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~-~~~l~~~~~~~ 111 (186)
..+++|++||-+|+|+ |..+..+++.. +. +|+++|.++..++......-..+ .|..+.. ...+.+.. .+
T Consensus 162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~-----Ga~~Vi~~~~~~~~~~~~~~lGa~~v--i~~~~~~~~~~v~~~t-~g 233 (352)
T 3fpc_A 162 ANIKLGDTVCVIGIGPVGLMSVAGANHL-----GAGRIFAVGSRKHCCDIALEYGATDI--INYKNGDIVEQILKAT-DG 233 (352)
T ss_dssp TTCCTTCCEEEECCSHHHHHHHHHHHTT-----TCSSEEEECCCHHHHHHHHHHTCCEE--ECGGGSCHHHHHHHHT-TT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-----CCcEEEEECCCHHHHHHHHHhCCceE--EcCCCcCHHHHHHHHc-CC
Confidence 3478899999999865 56666666665 34 89999998876443211100111 1222222 12344444 35
Q ss_pred CCccEEEe
Q 038391 112 KGFSVILS 119 (186)
Q Consensus 112 ~~~D~V~~ 119 (186)
..+|+|+-
T Consensus 234 ~g~D~v~d 241 (352)
T 3fpc_A 234 KGVDKVVI 241 (352)
T ss_dssp CCEEEEEE
T ss_pred CCCCEEEE
Confidence 57999986
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.051 Score=44.78 Aligned_cols=100 Identities=19% Similarity=0.193 Sum_probs=58.2
Q ss_pred CCCCCCCEEEEEccc--CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecC-CCh-hhHhhhCCC
Q 038391 35 KLIKPGSSVLDLGCA--PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVIN-LPS-NQVRALSPK 110 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG--~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~-~~~-~~l~~~~~~ 110 (186)
..++++++||-.||+ .|..+..++... +.+|+++|.++..++..... ... ...|..+ ... ..+....
T Consensus 141 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~-----G~~V~~~~~~~~~~~~~~~~-g~~-~~~d~~~~~~~~~~~~~~~-- 211 (333)
T 1v3u_A 141 CGVKGGETVLVSAAAGAVGSVVGQIAKLK-----GCKVVGAAGSDEKIAYLKQI-GFD-AAFNYKTVNSLEEALKKAS-- 211 (333)
T ss_dssp SCCCSSCEEEEESTTBHHHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHHT-TCS-EEEETTSCSCHHHHHHHHC--
T ss_pred hCCCCCCEEEEecCCCcHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHhc-CCc-EEEecCCHHHHHHHHHHHh--
Confidence 347889999999983 344444445443 57999999987664332111 111 1234443 221 2333333
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
.+.+|+++.+. |. ..+..+.+ .|+++|++++--
T Consensus 212 ~~~~d~vi~~~-----g~-------------~~~~~~~~------------------~l~~~G~~v~~g 244 (333)
T 1v3u_A 212 PDGYDCYFDNV-----GG-------------EFLNTVLS------------------QMKDFGKIAICG 244 (333)
T ss_dssp TTCEEEEEESS-----CH-------------HHHHHHHT------------------TEEEEEEEEECC
T ss_pred CCCCeEEEECC-----Ch-------------HHHHHHHH------------------HHhcCCEEEEEe
Confidence 24799999843 20 12455566 899999998654
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.01 Score=49.90 Aligned_cols=77 Identities=16% Similarity=0.203 Sum_probs=45.7
Q ss_pred CCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCC-hhhHhhhCCCCC
Q 038391 35 KLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLP-SNQVRALSPKQK 112 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~-~~~l~~~~~~~~ 112 (186)
..+++|++||-+|+|+ |..+..+++.. +.+|+++|.++..++......--..+ |-.... ...+.... .+.
T Consensus 185 ~~~~~g~~VlV~G~G~vG~~a~qla~~~-----Ga~Vi~~~~~~~~~~~~~~lGa~~vi--~~~~~~~~~~v~~~~-~g~ 256 (363)
T 3uog_A 185 GHLRAGDRVVVQGTGGVALFGLQIAKAT-----GAEVIVTSSSREKLDRAFALGADHGI--NRLEEDWVERVYALT-GDR 256 (363)
T ss_dssp TCCCTTCEEEEESSBHHHHHHHHHHHHT-----TCEEEEEESCHHHHHHHHHHTCSEEE--ETTTSCHHHHHHHHH-TTC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-----CCEEEEEecCchhHHHHHHcCCCEEE--cCCcccHHHHHHHHh-CCC
Confidence 4478899999999775 66666777765 57999999988765432111101111 211111 12333333 245
Q ss_pred CccEEEe
Q 038391 113 GFSVILS 119 (186)
Q Consensus 113 ~~D~V~~ 119 (186)
.+|+|+.
T Consensus 257 g~D~vid 263 (363)
T 3uog_A 257 GADHILE 263 (363)
T ss_dssp CEEEEEE
T ss_pred CceEEEE
Confidence 8999987
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.044 Score=45.81 Aligned_cols=106 Identities=17% Similarity=0.211 Sum_probs=62.0
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCe-EEEEeCCCCCCCCcC-CCCCeEEEEeeecC-CC-hhhHhhhCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGS-VVGIDVKKVKVPSLH-CDARVQTVSADVIN-LP-SNQVRALSPK 110 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~-v~gvDis~~~i~~~~-~~~~~~~~~~d~~~-~~-~~~l~~~~~~ 110 (186)
.+++|++||-+|+|+ |..+..+++.. +.+ |+++|.++..++... ....+.....+..+ .. ...+.+.. .
T Consensus 176 ~~~~g~~VlV~GaG~vG~~aiqlak~~-----Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t-~ 249 (363)
T 3m6i_A 176 GVRLGDPVLICGAGPIGLITMLCAKAA-----GACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESF-G 249 (363)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHHT-----TCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHT-S
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHh-C
Confidence 378899999999865 66667777765 354 999999987754321 11122222221100 00 12333333 2
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
+..+|+|+-. .+. ...+..+.+ .|+++|++++--...
T Consensus 250 g~g~Dvvid~-----~g~------------~~~~~~~~~------------------~l~~~G~iv~~G~~~ 286 (363)
T 3m6i_A 250 GIEPAVALEC-----TGV------------ESSIAAAIW------------------AVKFGGKVFVIGVGK 286 (363)
T ss_dssp SCCCSEEEEC-----SCC------------HHHHHHHHH------------------HSCTTCEEEECCCCC
T ss_pred CCCCCEEEEC-----CCC------------hHHHHHHHH------------------HhcCCCEEEEEccCC
Confidence 5689999872 221 124455555 899999999765443
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.073 Score=44.58 Aligned_cols=43 Identities=26% Similarity=0.532 Sum_probs=32.7
Q ss_pred CCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCC
Q 038391 35 KLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPS 82 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~ 82 (186)
..+++|++||-+|+|+ |..+..+++.+ +. +|+++|.++..++.
T Consensus 186 ~~~~~g~~VlV~GaG~vG~~avqla~~~-----Ga~~Vi~~~~~~~~~~~ 230 (373)
T 2fzw_A 186 AKLEPGSVCAVFGLGGVGLAVIMGCKVA-----GASRIIGVDINKDKFAR 230 (373)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHH-----TCSEEEEECSCGGGHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCeEEEEcCCHHHHHH
Confidence 3478899999999765 56666677766 35 89999999887544
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.077 Score=44.54 Aligned_cols=97 Identities=11% Similarity=0.123 Sum_probs=58.0
Q ss_pred CCCEEEEEc-ccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 39 PGSSVLDLG-CAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 39 ~~~~vLDlG-cG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
+|++||-.| +|+ |..+..+++.++ +.+|+++|.++..++......--.++ |..+.....+.++ .++.+|+
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~----g~~Vi~~~~~~~~~~~~~~lGad~vi--~~~~~~~~~v~~~--~~~g~Dv 242 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRT----DLTVIATASRPETQEWVKSLGAHHVI--DHSKPLAAEVAAL--GLGAPAF 242 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHC----CSEEEEECSSHHHHHHHHHTTCSEEE--CTTSCHHHHHHTT--CSCCEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHHHHcCCCEEE--eCCCCHHHHHHHh--cCCCceE
Confidence 788999998 554 777777887653 57999999988764432111101111 2221112233333 3468999
Q ss_pred EEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 117 V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
|+.. .+ ....+..+.+ .|+++|++++-
T Consensus 243 vid~-----~g------------~~~~~~~~~~------------------~l~~~G~iv~~ 269 (363)
T 4dvj_A 243 VFST-----TH------------TDKHAAEIAD------------------LIAPQGRFCLI 269 (363)
T ss_dssp EEEC-----SC------------HHHHHHHHHH------------------HSCTTCEEEEC
T ss_pred EEEC-----CC------------chhhHHHHHH------------------HhcCCCEEEEE
Confidence 9872 22 1234555555 89999999864
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=94.08 E-value=0.035 Score=46.13 Aligned_cols=73 Identities=21% Similarity=0.289 Sum_probs=43.1
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCCcCCCCCeEEEEeeecCCC-hhhHhhhCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPSLHCDARVQTVSADVINLP-SNQVRALSPKQK 112 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~-~~~l~~~~~~~~ 112 (186)
.+ +|++||-+|+|. |..+..+++.+ +. +|+++|.++..++....... .+ .|..+.. ...+.++. +.
T Consensus 162 ~~-~g~~VlV~GaG~vG~~~~q~a~~~-----Ga~~Vi~~~~~~~~~~~~~~la~-~v--~~~~~~~~~~~~~~~~--~~ 230 (343)
T 2dq4_A 162 GV-SGKSVLITGAGPIGLMAAMVVRAS-----GAGPILVSDPNPYRLAFARPYAD-RL--VNPLEEDLLEVVRRVT--GS 230 (343)
T ss_dssp CC-TTSCEEEECCSHHHHHHHHHHHHT-----TCCSEEEECSCHHHHGGGTTTCS-EE--ECTTTSCHHHHHHHHH--SS
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHc-----CCCEEEEECCCHHHHHHHHHhHH-hc--cCcCccCHHHHHHHhc--CC
Confidence 35 899999999854 55556666665 45 89999998876544222111 11 2222222 12333333 45
Q ss_pred CccEEEe
Q 038391 113 GFSVILS 119 (186)
Q Consensus 113 ~~D~V~~ 119 (186)
.+|+|+.
T Consensus 231 g~D~vid 237 (343)
T 2dq4_A 231 GVEVLLE 237 (343)
T ss_dssp CEEEEEE
T ss_pred CCCEEEE
Confidence 7999987
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.033 Score=46.32 Aligned_cols=80 Identities=14% Similarity=0.197 Sum_probs=47.0
Q ss_pred HcCCCCCCCEEEEEcc-c-CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 33 QYKLIKPGSSVLDLGC-A-PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 33 ~~~~~~~~~~vLDlGc-G-~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
....+++|++||-.|+ | .|..+..+++.. +.+|++++.++..++......--.++ |........+.+.. .
T Consensus 153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~-----Ga~Vi~~~~~~~~~~~~~~~ga~~v~--~~~~~~~~~v~~~~-~ 224 (342)
T 4eye_A 153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGM-----GAKVIAVVNRTAATEFVKSVGADIVL--PLEEGWAKAVREAT-G 224 (342)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT-----TCEEEEEESSGGGHHHHHHHTCSEEE--ESSTTHHHHHHHHT-T
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHhcCCcEEe--cCchhHHHHHHHHh-C
Confidence 3345788999999997 3 366677777765 57999999988775432111111112 22211122333443 2
Q ss_pred CCCccEEEeC
Q 038391 111 QKGFSVILSD 120 (186)
Q Consensus 111 ~~~~D~V~~d 120 (186)
+..+|+|+..
T Consensus 225 ~~g~Dvvid~ 234 (342)
T 4eye_A 225 GAGVDMVVDP 234 (342)
T ss_dssp TSCEEEEEES
T ss_pred CCCceEEEEC
Confidence 4579999973
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.026 Score=46.55 Aligned_cols=103 Identities=19% Similarity=0.193 Sum_probs=61.3
Q ss_pred CCCCCCCEEEEEc-cc-CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCC-hhhHhhhCCCC
Q 038391 35 KLIKPGSSVLDLG-CA-PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLP-SNQVRALSPKQ 111 (186)
Q Consensus 35 ~~~~~~~~vLDlG-cG-~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~-~~~l~~~~~~~ 111 (186)
..+++|++||-.| +| .|..+..+++.. +.+|++++.++..++......-... .|..+.. ...+.+.. .+
T Consensus 136 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~-----Ga~Vi~~~~~~~~~~~~~~~Ga~~~--~~~~~~~~~~~~~~~~-~~ 207 (325)
T 3jyn_A 136 YQVKPGEIILFHAAAGGVGSLACQWAKAL-----GAKLIGTVSSPEKAAHAKALGAWET--IDYSHEDVAKRVLELT-DG 207 (325)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHH-----TCEEEEEESSHHHHHHHHHHTCSEE--EETTTSCHHHHHHHHT-TT
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHHcCCCEE--EeCCCccHHHHHHHHh-CC
Confidence 3478899999998 34 366667777765 5799999998876543211110111 2322222 12333443 24
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
..+|+|+... +. ..+..+.+ .|+++|++++--..
T Consensus 208 ~g~Dvvid~~-----g~-------------~~~~~~~~------------------~l~~~G~iv~~g~~ 241 (325)
T 3jyn_A 208 KKCPVVYDGV-----GQ-------------DTWLTSLD------------------SVAPRGLVVSFGNA 241 (325)
T ss_dssp CCEEEEEESS-----CG-------------GGHHHHHT------------------TEEEEEEEEECCCT
T ss_pred CCceEEEECC-----Ch-------------HHHHHHHH------------------HhcCCCEEEEEecC
Confidence 6899998732 21 13344455 89999999876544
|
| >3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus} | Back alignment and structure |
|---|
Probab=93.86 E-value=0.068 Score=43.94 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=37.8
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
+.||+|++|+.-.+.-+|--.-+...-.....-..+.+ .|+|||+++++.+
T Consensus 210 grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~------------------~L~pGGtlv~~aY 260 (324)
T 3trk_A 210 GRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLR------------------LLKPGGSLLIRAY 260 (324)
T ss_dssp CCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGG------------------GEEEEEEEEEEEC
T ss_pred CceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHh------------------hcCCCceEEEEee
Confidence 79999999997555555555544444455566666777 9999999999875
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.018 Score=48.67 Aligned_cols=43 Identities=26% Similarity=0.173 Sum_probs=32.3
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.+++|++||-+|+|+ |..+..+++..+ ..+|+++|.++...+.
T Consensus 179 ~~~~g~~VlV~GaG~vG~~aiqlak~~G----a~~Vi~~~~~~~~~~~ 222 (370)
T 4ej6_A 179 GIKAGSTVAILGGGVIGLLTVQLARLAG----ATTVILSTRQATKRRL 222 (370)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTT----CSEEEEECSCHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC----CCEEEEECCCHHHHHH
Confidence 378899999999865 666677777653 1389999999877543
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.74 E-value=0.015 Score=49.15 Aligned_cols=42 Identities=21% Similarity=0.262 Sum_probs=32.5
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.+++|++||-+|+|+ |.....+++.+ +.+|+++|.++..++.
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~-----Ga~Vi~~~~~~~~~~~ 233 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAM-----GAHVVAFTTSEAKREA 233 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT-----TCEEEEEESSGGGHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHH
Confidence 478899999999875 56666666665 4689999999887544
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=93.72 E-value=0.075 Score=45.72 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=34.0
Q ss_pred CCCCCEEEEEcccCChHHHHHH-HHhCCCCCCCeEEEEeCCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVAC-QSLGPLDNGGSVVGIDVKKVKV 80 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~-~~~~~~~~~~~v~gvDis~~~i 80 (186)
++++..++|+||..|.++..++ +..+. .++|+++|.+|...
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~---~~~V~afEP~p~~~ 265 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGK---FERVWMIEPDRINL 265 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSC---CSEEEEECCCHHHH
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCC---CCEEEEEcCCHHHH
Confidence 4788999999999999999988 44432 37999999999773
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=93.66 E-value=0.061 Score=44.01 Aligned_cols=43 Identities=14% Similarity=0.053 Sum_probs=33.4
Q ss_pred cCCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 34 YKLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 34 ~~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
...+++|++||-+|+|+ |..+..+++.. +.+|++++ ++..++.
T Consensus 137 ~~~~~~g~~VlV~GaG~vG~~a~qlak~~-----Ga~Vi~~~-~~~~~~~ 180 (315)
T 3goh_A 137 KIPLTKQREVLIVGFGAVNNLLTQMLNNA-----GYVVDLVS-ASLSQAL 180 (315)
T ss_dssp TSCCCSCCEEEEECCSHHHHHHHHHHHHH-----TCEEEEEC-SSCCHHH
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-----CCEEEEEE-ChhhHHH
Confidence 34478899999999964 66777777776 46999999 8877554
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.037 Score=45.71 Aligned_cols=78 Identities=15% Similarity=0.130 Sum_probs=45.4
Q ss_pred CCCCCCCEEEEEcc-c-CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCC-hhhHhhhCCCC
Q 038391 35 KLIKPGSSVLDLGC-A-PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLP-SNQVRALSPKQ 111 (186)
Q Consensus 35 ~~~~~~~~vLDlGc-G-~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~-~~~l~~~~~~~ 111 (186)
..+++|++||-.|+ | .|..+..+++.. +.+|+++|.++..++......--.. .|..+.. ...+.+.. .+
T Consensus 144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~-----Ga~Vi~~~~~~~~~~~~~~~ga~~~--~~~~~~~~~~~~~~~~-~~ 215 (334)
T 3qwb_A 144 YHVKKGDYVLLFAAAGGVGLILNQLLKMK-----GAHTIAVASTDEKLKIAKEYGAEYL--INASKEDILRQVLKFT-NG 215 (334)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHHTTCSEE--EETTTSCHHHHHHHHT-TT
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHHcCCcEE--EeCCCchHHHHHHHHh-CC
Confidence 35788999999994 3 355666666664 5799999998876543211111111 2222222 22334443 24
Q ss_pred CCccEEEeC
Q 038391 112 KGFSVILSD 120 (186)
Q Consensus 112 ~~~D~V~~d 120 (186)
..+|+|+..
T Consensus 216 ~g~D~vid~ 224 (334)
T 3qwb_A 216 KGVDASFDS 224 (334)
T ss_dssp SCEEEEEEC
T ss_pred CCceEEEEC
Confidence 679999973
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.56 E-value=0.018 Score=48.68 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=31.1
Q ss_pred CCCCCEEEEEcccC-ChHHHHHHHHhCCCCCC-CeEEEEeCCCCCCCC
Q 038391 37 IKPGSSVLDLGCAP-GAWLQVACQSLGPLDNG-GSVVGIDVKKVKVPS 82 (186)
Q Consensus 37 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~-~~v~gvDis~~~i~~ 82 (186)
+++|++||-+|+|+ |..+..+++.+ + .+|+++|.+++.++.
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~-----Ga~~Vi~~~~~~~~~~~ 235 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSL-----GAENVIVIAGSPNRLKL 235 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHT-----TBSEEEEEESCHHHHHH
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHc-----CCceEEEEcCCHHHHHH
Confidence 67899999999664 55666666665 4 599999998877543
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=93.49 E-value=1.5 Score=33.11 Aligned_cols=73 Identities=18% Similarity=0.168 Sum_probs=51.9
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCC
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~ 121 (186)
+||=.| |+|+++..+++.+-.. +.+|++++-++..+... .+++++++|+.+. ...+.... ..+|+|+...
T Consensus 2 ~ilItG-atG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~---~~~~~~~~D~~d~-~~~~~~~~---~~~d~vi~~a 71 (219)
T 3dqp_A 2 KIFIVG-STGRVGKSLLKSLSTT--DYQIYAGARKVEQVPQY---NNVKAVHFDVDWT-PEEMAKQL---HGMDAIINVS 71 (219)
T ss_dssp EEEEES-TTSHHHHHHHHHHTTS--SCEEEEEESSGGGSCCC---TTEEEEECCTTSC-HHHHHTTT---TTCSEEEECC
T ss_pred eEEEEC-CCCHHHHHHHHHHHHC--CCEEEEEECCccchhhc---CCceEEEecccCC-HHHHHHHH---cCCCEEEECC
Confidence 466566 5799999999888652 57999999988765432 5789999998861 22344433 3699999876
Q ss_pred CCC
Q 038391 122 CPS 124 (186)
Q Consensus 122 ~~~ 124 (186)
...
T Consensus 72 g~~ 74 (219)
T 3dqp_A 72 GSG 74 (219)
T ss_dssp CCT
T ss_pred cCC
Confidence 543
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=93.32 E-value=0.1 Score=43.63 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=32.7
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.+++|++||-+|+|+ |..+..+++.+ +.+|+++|.++..++.
T Consensus 176 ~~~~g~~VlV~GaG~vG~~~~qlak~~-----Ga~Vi~~~~~~~~~~~ 218 (360)
T 1piw_A 176 GCGPGKKVGIVGLGGIGSMGTLISKAM-----GAETYVISRSSRKRED 218 (360)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHH-----TCEEEEEESSSTTHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-----CCEEEEEcCCHHHHHH
Confidence 478899999999864 56666666665 4689999999887554
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=93.25 E-value=0.045 Score=45.71 Aligned_cols=68 Identities=18% Similarity=0.136 Sum_probs=41.8
Q ss_pred CeEEE-EeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCC
Q 038391 88 RVQTV-SADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDS 166 (186)
Q Consensus 88 ~~~~~-~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (186)
..+++ ++|+... +..+ ++++||+|++|+|.............-.......+.++.+
T Consensus 38 ~~~l~i~gD~l~~----L~~l--~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~r----------------- 94 (319)
T 1eg2_A 38 TRHVYDVCDCLDT----LAKL--PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAER----------------- 94 (319)
T ss_dssp EEEEEEECCHHHH----HHTS--CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHH-----------------
T ss_pred cceEEECCcHHHH----HHhC--ccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHH-----------------
Confidence 35666 8887542 2222 4579999999987544310000011123345667777777
Q ss_pred cccccCcEEEEEE
Q 038391 167 GVLKPGGHLVIKL 179 (186)
Q Consensus 167 ~~LkpgG~lvi~~ 179 (186)
+|+|+|.++|.+
T Consensus 95 -vLk~~G~i~i~~ 106 (319)
T 1eg2_A 95 -VLSPTGSIAIFG 106 (319)
T ss_dssp -HEEEEEEEEEEE
T ss_pred -HcCCCeEEEEEc
Confidence 999999999864
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.21 E-value=0.074 Score=44.43 Aligned_cols=79 Identities=15% Similarity=0.193 Sum_probs=44.1
Q ss_pred cCCCCCCCEEEEEccc--CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCC-hhhHhhhCCC
Q 038391 34 YKLIKPGSSVLDLGCA--PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLP-SNQVRALSPK 110 (186)
Q Consensus 34 ~~~~~~~~~vLDlGcG--~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~-~~~l~~~~~~ 110 (186)
...++++++||-.|++ .|.....+++.. +.+|++++.++..++..... .... ..|..+.. ...+.+.. .
T Consensus 165 ~~~~~~g~~vlV~GasggiG~~~~~~a~~~-----Ga~Vi~~~~~~~~~~~~~~~-ga~~-~~d~~~~~~~~~~~~~~-~ 236 (351)
T 1yb5_A 165 SACVKAGESVLVHGASGGVGLAACQIARAY-----GLKILGTAGTEEGQKIVLQN-GAHE-VFNHREVNYIDKIKKYV-G 236 (351)
T ss_dssp TSCCCTTCEEEEETCSSHHHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHHT-TCSE-EEETTSTTHHHHHHHHH-C
T ss_pred hhCCCCcCEEEEECCCChHHHHHHHHHHHC-----CCEEEEEeCChhHHHHHHHc-CCCE-EEeCCCchHHHHHHHHc-C
Confidence 3457889999999973 344555555554 57999999987764431111 1111 12333322 12233332 2
Q ss_pred CCCccEEEeC
Q 038391 111 QKGFSVILSD 120 (186)
Q Consensus 111 ~~~~D~V~~d 120 (186)
+..+|+|+..
T Consensus 237 ~~~~D~vi~~ 246 (351)
T 1yb5_A 237 EKGIDIIIEM 246 (351)
T ss_dssp TTCEEEEEES
T ss_pred CCCcEEEEEC
Confidence 4579999873
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=93.16 E-value=0.081 Score=42.46 Aligned_cols=67 Identities=15% Similarity=0.101 Sum_probs=42.5
Q ss_pred eEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCC-CCccc--chHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCC
Q 038391 89 VQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS-GITTK--DAALSVELGMRAVDLALGPAALASPVNNSDSSTD 165 (186)
Q Consensus 89 ~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (186)
.+++++|+.. .+..+ ++++||+|++|+|.... ..+.. ....-......++.++.+
T Consensus 5 ~~l~~gD~~~----~l~~l--~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~---------------- 62 (260)
T 1g60_A 5 NKIHQMNCFD----FLDQV--ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLD---------------- 62 (260)
T ss_dssp SSEEECCHHH----HHHHS--CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHH----------------
T ss_pred CeEEechHHH----HHHhc--cccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHH----------------
Confidence 4567888754 23333 35799999999986543 11110 122223355677777777
Q ss_pred CcccccCcEEEEEE
Q 038391 166 SGVLKPGGHLVIKL 179 (186)
Q Consensus 166 ~~~LkpgG~lvi~~ 179 (186)
+|+|+|.++|.+
T Consensus 63 --~Lk~~g~i~v~~ 74 (260)
T 1g60_A 63 --KLDKDGSLYIFN 74 (260)
T ss_dssp --HEEEEEEEEEEE
T ss_pred --HhcCCeEEEEEc
Confidence 999999999875
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=92.81 E-value=0.21 Score=41.60 Aligned_cols=100 Identities=15% Similarity=0.150 Sum_probs=56.9
Q ss_pred CCCC------CEEEEEcccCChHHHHH-HHHh-CCCCCCCe-EEEEeCCCC---CCCCcCCCCCeEEEEeeecCCChhhH
Q 038391 37 IKPG------SSVLDLGCAPGAWLQVA-CQSL-GPLDNGGS-VVGIDVKKV---KVPSLHCDARVQTVSADVINLPSNQV 104 (186)
Q Consensus 37 ~~~~------~~vLDlGcG~G~~~~~l-~~~~-~~~~~~~~-v~gvDis~~---~i~~~~~~~~~~~~~~d~~~~~~~~l 104 (186)
+++| ++||-+|+ |..+..+ ++.. ... +.+ |+++|.++. .++.... .....+ |..+.....+
T Consensus 164 ~~~g~~~~~~~~VlV~Ga--G~vG~~a~iqla~k~~--Ga~~Vi~~~~~~~~~~~~~~~~~-lGa~~v--~~~~~~~~~i 236 (357)
T 2b5w_A 164 ASRSAFDWDPSSAFVLGN--GSLGLLTLAMLKVDDK--GYENLYCLGRRDRPDPTIDIIEE-LDATYV--DSRQTPVEDV 236 (357)
T ss_dssp HTTTTSCCCCCEEEEECC--SHHHHHHHHHHHHCTT--CCCEEEEEECCCSSCHHHHHHHH-TTCEEE--ETTTSCGGGH
T ss_pred CCCCcccCCCCEEEEECC--CHHHHHHHHHHHHHHc--CCcEEEEEeCCcccHHHHHHHHH-cCCccc--CCCccCHHHH
Confidence 5678 99999998 4444444 4433 321 455 999999987 5443211 112323 4333221114
Q ss_pred hhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 105 RALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 105 ~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
.++ .+ .+|+|+-. .+. ...+..+.+ .|+++|++++--..
T Consensus 237 ~~~--~g-g~Dvvid~-----~g~------------~~~~~~~~~------------------~l~~~G~iv~~g~~ 275 (357)
T 2b5w_A 237 PDV--YE-QMDFIYEA-----TGF------------PKHAIQSVQ------------------ALAPNGVGALLGVP 275 (357)
T ss_dssp HHH--SC-CEEEEEEC-----SCC------------HHHHHHHHH------------------HEEEEEEEEECCCC
T ss_pred HHh--CC-CCCEEEEC-----CCC------------hHHHHHHHH------------------HHhcCCEEEEEeCC
Confidence 444 23 89999862 221 123445555 89999999875443
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=0.12 Score=53.87 Aligned_cols=104 Identities=14% Similarity=0.121 Sum_probs=48.4
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCC--CCeEEEEeCCCCCCCCcCCCC-CeEEEE--eeecCCChhhHhhhCCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDN--GGSVVGIDVKKVKVPSLHCDA-RVQTVS--ADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~--~~~v~gvDis~~~i~~~~~~~-~~~~~~--~d~~~~~~~~l~~~~~~~~~ 113 (186)
+..+||++|+|+|..+..+.+.+... + -.+.+..|+|+...+.++... .+...+ .|..+.. .+ ...+
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~-~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~-----~~--~~~~ 1311 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQ-PVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPA-----PG--SLGK 1311 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTS-SSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCC-----C-------
T ss_pred CCceEEEECCCccHHHHHHHHhhccc-CcccceEEEecCChHHHHHHHHHhhhcccccccccccccc-----cC--CCCc
Confidence 45699999999999888887776420 1 136778899988875543321 111111 1211110 00 1347
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
||+|++.- ..|... .....+.++.+ +|||||.|++..
T Consensus 1312 ydlvia~~-----vl~~t~------~~~~~l~~~~~------------------lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1312 ADLLVCNC-----ALATLG------DPAVAVGNMAA------------------TLKEGGFLLLHT 1348 (2512)
T ss_dssp CCEEEEEC-----C--------------------------------------------CCEEEEEE
T ss_pred eeEEEEcc-----cccccc------cHHHHHHHHHH------------------hcCCCcEEEEEe
Confidence 99999832 222211 13356666776 999999998864
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=92.70 E-value=0.11 Score=43.13 Aligned_cols=72 Identities=11% Similarity=0.096 Sum_probs=41.0
Q ss_pred CCCEEEEE-cccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 39 PGSSVLDL-GCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 39 ~~~~vLDl-GcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
+|++||-. |+|+ |..+..+++.. +.+|++++.++..++......--.++ |..+.....+.+. .++.+|+
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~-----Ga~Vi~~~~~~~~~~~~~~lGa~~vi--~~~~~~~~~~~~~--~~~g~Dv 220 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAY-----GLRVITTASRNETIEWTKKMGADIVL--NHKESLLNQFKTQ--GIELVDY 220 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-----TCEEEEECCSHHHHHHHHHHTCSEEE--CTTSCHHHHHHHH--TCCCEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHhcCCcEEE--ECCccHHHHHHHh--CCCCccE
Confidence 89999999 4554 56666666664 57999999987664431110000111 2111112234444 3568999
Q ss_pred EEe
Q 038391 117 ILS 119 (186)
Q Consensus 117 V~~ 119 (186)
|+.
T Consensus 221 v~d 223 (346)
T 3fbg_A 221 VFC 223 (346)
T ss_dssp EEE
T ss_pred EEE
Confidence 987
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.62 E-value=0.06 Score=45.83 Aligned_cols=77 Identities=19% Similarity=0.212 Sum_probs=45.5
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCC-hhhHhhhCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLP-SNQVRALSPKQKG 113 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~-~~~l~~~~~~~~~ 113 (186)
.+++|++||-+|+|+ |..+..+++..+ ..+|+++|.++..++......--.++ |..+.. ...+.++. .+..
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~G----a~~Vi~~~~~~~~~~~~~~lGa~~vi--~~~~~~~~~~i~~~t-~g~g 282 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAG----ASKVILSEPSEVRRNLAKELGADHVI--DPTKENFVEAVLDYT-NGLG 282 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTT----CSEEEEECSCHHHHHHHHHHTCSEEE--CTTTSCHHHHHHHHT-TTCC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC----CCEEEEECCCHHHHHHHHHcCCCEEE--cCCCCCHHHHHHHHh-CCCC
Confidence 478899999999865 566666666653 13899999998775432111101111 222222 22344444 3558
Q ss_pred ccEEEe
Q 038391 114 FSVILS 119 (186)
Q Consensus 114 ~D~V~~ 119 (186)
+|+|+-
T Consensus 283 ~D~vid 288 (404)
T 3ip1_A 283 AKLFLE 288 (404)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 999986
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=92.28 E-value=0.066 Score=44.38 Aligned_cols=42 Identities=26% Similarity=0.286 Sum_probs=31.4
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.+++|++||-+|+|+ |.....+++.. +.+|+++|.++..++.
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~-----Ga~Vi~~~~~~~~~~~ 203 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAM-----GLNVVAVDIGDEKLEL 203 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHT-----TCEEEEECSCHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-----CCEEEEEeCCHHHHHH
Confidence 378899999999964 55556666654 5699999998876543
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=92.04 E-value=0.17 Score=41.99 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=31.0
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKV 80 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i 80 (186)
++|..|||..||+|..+....+. +-+.+|+|+++..+
T Consensus 251 ~~~~~VlDpF~GsGtt~~aa~~~------gr~~ig~e~~~~~~ 287 (323)
T 1boo_A 251 EPDDLVVDIFGGSNTTGLVAERE------SRKWISFEMKPEYV 287 (323)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHT------TCEEEEEESCHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc------CCCEEEEeCCHHHH
Confidence 78999999999999876665554 57999999999774
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=91.99 E-value=0.25 Score=41.07 Aligned_cols=45 Identities=27% Similarity=0.337 Sum_probs=34.1
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKK 77 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~ 77 (186)
.|++.+.... .++|..|||..||+|..+....+. +-+.+|+|+.+
T Consensus 230 ~l~~~~i~~~-~~~~~~vlDpF~GsGtt~~aa~~~------~r~~ig~e~~~ 274 (319)
T 1eg2_A 230 AVIERLVRAL-SHPGSTVLDFFAGSGVTARVAIQE------GRNSICTDAAP 274 (319)
T ss_dssp HHHHHHHHHH-SCTTCEEEETTCTTCHHHHHHHHH------TCEEEEEESST
T ss_pred HHHHHHHHHh-CCCCCEEEecCCCCCHHHHHHHHc------CCcEEEEECCc
Confidence 4444333322 378999999999999877777766 57999999999
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=91.22 E-value=0.22 Score=45.36 Aligned_cols=40 Identities=5% Similarity=0.033 Sum_probs=28.5
Q ss_pred CCEEEEEcccCChHHHHHHHHhC--------CCCCCCeEEEEeCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLG--------PLDNGGSVVGIDVKKVK 79 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~--------~~~~~~~v~gvDis~~~ 79 (186)
.-+|+|+|.|+|.....+.+.+. ..+...+++.+|..|..
T Consensus 59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~ 106 (689)
T 3pvc_A 59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLH 106 (689)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCC
T ss_pred ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCC
Confidence 45899999999998888777541 10012579999997744
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=91.12 E-value=0.13 Score=42.72 Aligned_cols=104 Identities=15% Similarity=0.286 Sum_probs=59.3
Q ss_pred CCCCCCCEEEEEcccC--ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh-hhHhhhCCCC
Q 038391 35 KLIKPGSSVLDLGCAP--GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQ 111 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~--G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~-~~l~~~~~~~ 111 (186)
..++++++||-.|+|. |..+..+++... +.+|+++|.++..++..... .... ..|..+... ..+..+.. .
T Consensus 166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~----Ga~Vi~~~~~~~~~~~~~~~-g~~~-~~~~~~~~~~~~~~~~~~-~ 238 (347)
T 1jvb_A 166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVS----GATIIGVDVREEAVEAAKRA-GADY-VINASMQDPLAEIRRITE-S 238 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHT----CCEEEEEESSHHHHHHHHHH-TCSE-EEETTTSCHHHHHHHHTT-T
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHHHcC----CCeEEEEcCCHHHHHHHHHh-CCCE-EecCCCccHHHHHHHHhc-C
Confidence 3478899999999873 444555555541 36899999988764432110 0111 123333221 12333331 1
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
+.+|+|+... +. ...+..+.+ .|+++|++++--.
T Consensus 239 ~~~d~vi~~~-----g~------------~~~~~~~~~------------------~l~~~G~iv~~g~ 272 (347)
T 1jvb_A 239 KGVDAVIDLN-----NS------------EKTLSVYPK------------------ALAKQGKYVMVGL 272 (347)
T ss_dssp SCEEEEEESC-----CC------------HHHHTTGGG------------------GEEEEEEEEECCS
T ss_pred CCceEEEECC-----CC------------HHHHHHHHH------------------HHhcCCEEEEECC
Confidence 4899999743 21 124455555 8999999987543
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.11 E-value=0.078 Score=43.96 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=46.0
Q ss_pred CCCCCCEEEEEcc--cCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh-hhHhhhCCCCC
Q 038391 36 LIKPGSSVLDLGC--APGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQK 112 (186)
Q Consensus 36 ~~~~~~~vLDlGc--G~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~-~~l~~~~~~~~ 112 (186)
.++++++||-.|+ |.|.....+++.. +.+|+++|.++..++..... .... ..|..+... ..+.+.. .+.
T Consensus 163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~-----G~~Vi~~~~~~~~~~~~~~~-ga~~-~~d~~~~~~~~~~~~~~-~~~ 234 (343)
T 2eih_A 163 GVRPGDDVLVMAAGSGVSVAAIQIAKLF-----GARVIATAGSEDKLRRAKAL-GADE-TVNYTHPDWPKEVRRLT-GGK 234 (343)
T ss_dssp CCCTTCEEEECSTTSTTHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHHH-TCSE-EEETTSTTHHHHHHHHT-TTT
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHhc-CCCE-EEcCCcccHHHHHHHHh-CCC
Confidence 4688999999998 3466666666664 57999999987765432110 1111 124333221 2333333 245
Q ss_pred CccEEEeC
Q 038391 113 GFSVILSD 120 (186)
Q Consensus 113 ~~D~V~~d 120 (186)
.+|+|+..
T Consensus 235 ~~d~vi~~ 242 (343)
T 2eih_A 235 GADKVVDH 242 (343)
T ss_dssp CEEEEEES
T ss_pred CceEEEEC
Confidence 79999974
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=91.09 E-value=0.044 Score=45.50 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=31.3
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.+ +|++||-+|+|+ |..+..+++...+ +.+|+++|.++..++.
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~---Ga~Vi~~~~~~~~~~~ 211 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMK---NITIVGISRSKKHRDF 211 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCT---TCEEEEECSCHHHHHH
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcC---CCEEEEEeCCHHHHHH
Confidence 35 899999999964 5666667766511 3689999998876543
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=90.99 E-value=0.14 Score=41.53 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=31.6
Q ss_pred CCCCCEEEEEcc-c-CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 37 IKPGSSVLDLGC-A-PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 37 ~~~~~~vLDlGc-G-~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
+++|++||-.|+ | .|..+..+++.. +.+|+++|.++..++.
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~-----Ga~Vi~~~~~~~~~~~ 165 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAM-----GLRVLAAASRPEKLAL 165 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT-----TCEEEEEESSGGGSHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHH
Confidence 789999999997 3 366666666665 4699999998877544
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=90.92 E-value=0.052 Score=45.11 Aligned_cols=75 Identities=20% Similarity=0.238 Sum_probs=42.5
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCCcCCCCCeEEEEeeecCCC-hhhHhhhCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPSLHCDARVQTVSADVINLP-SNQVRALSPKQK 112 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~-~~~l~~~~~~~~ 112 (186)
.+ +|++||-+|+|. |.....+++.. +. +|+++|.++..++..... ....+ .|..+.. ...+.++. .+.
T Consensus 165 ~~-~g~~VlV~GaG~vG~~~~q~a~~~-----Ga~~Vi~~~~~~~~~~~~~~~-Ga~~~-~~~~~~~~~~~v~~~~-~g~ 235 (348)
T 2d8a_A 165 PI-SGKSVLITGAGPLGLLGIAVAKAS-----GAYPVIVSEPSDFRRELAKKV-GADYV-INPFEEDVVKEVMDIT-DGN 235 (348)
T ss_dssp CC-TTCCEEEECCSHHHHHHHHHHHHT-----TCCSEEEECSCHHHHHHHHHH-TCSEE-ECTTTSCHHHHHHHHT-TTS
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHc-----CCCEEEEECCCHHHHHHHHHh-CCCEE-ECCCCcCHHHHHHHHc-CCC
Confidence 35 899999999953 55555666654 45 899999988764432110 01111 1222222 12333443 245
Q ss_pred CccEEEe
Q 038391 113 GFSVILS 119 (186)
Q Consensus 113 ~~D~V~~ 119 (186)
.+|+|+.
T Consensus 236 g~D~vid 242 (348)
T 2d8a_A 236 GVDVFLE 242 (348)
T ss_dssp CEEEEEE
T ss_pred CCCEEEE
Confidence 7999987
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=90.91 E-value=0.069 Score=44.65 Aligned_cols=40 Identities=25% Similarity=0.212 Sum_probs=30.2
Q ss_pred CC-CCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 37 IK-PGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 37 ~~-~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
++ +|++||-+|+|+ |..+..+++.+ +.+|+++|.++..++
T Consensus 177 ~~~~g~~VlV~GaG~vG~~a~qlak~~-----Ga~Vi~~~~~~~~~~ 218 (357)
T 2cf5_A 177 LKQPGLRGGILGLGGVGHMGVKIAKAM-----GHHVTVISSSNKKRE 218 (357)
T ss_dssp TTSTTCEEEEECCSHHHHHHHHHHHHH-----TCEEEEEESSTTHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-----CCeEEEEeCChHHHH
Confidence 56 899999999764 55556666665 469999999987754
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=90.83 E-value=0.075 Score=46.97 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=50.0
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCC---cC-CCCCeEEEEeeecCCChh------------h
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPS---LH-CDARVQTVSADVINLPSN------------Q 103 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~---~~-~~~~~~~~~~d~~~~~~~------------~ 103 (186)
-+++||.||.|+++.-+.+. |. .|+++|+++....- +. ..+...++.+|+.++... .
T Consensus 89 ~~viDLFaG~GGlslG~~~a------G~~~v~avE~d~~A~~ty~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~ 162 (482)
T 3me5_A 89 FRFIDLFAGIGGIRRGFESI------GGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHQEGVSDEAAAEH 162 (482)
T ss_dssp EEEEEESCTTSHHHHHHHTT------TEEEEEEECCCHHHHHHHHHHSCCCTTTCEEESCTHHHHCTTCTTSCHHHHHHH
T ss_pred ceEEEecCCccHHHHHHHHC------CCEEEEEEeCCHHHHHHHHHhcccCCCcceeccchhhhhhccccccchhhHHhh
Confidence 47999999999999988875 34 58999999977543 11 123455677887654311 0
Q ss_pred HhhhCCCCCCccEEEeCCCCCC
Q 038391 104 VRALSPKQKGFSVILSDMCPSV 125 (186)
Q Consensus 104 l~~~~~~~~~~D~V~~d~~~~~ 125 (186)
+... ...+|+++...+|..
T Consensus 163 i~~~---~~~~Dvl~gGpPCQ~ 181 (482)
T 3me5_A 163 IRQH---IPEHDVLLAGFPCQP 181 (482)
T ss_dssp HHHH---SCCCSEEEEECCCCC
T ss_pred hhhc---CCCCCEEEecCCCcc
Confidence 1111 236899998877643
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.73 E-value=0.078 Score=43.32 Aligned_cols=81 Identities=14% Similarity=0.140 Sum_probs=51.4
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC--cCCCCCeEEEEeeecCCCh-h-hHhhhCCCCCCc
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS--LHCDARVQTVSADVINLPS-N-QVRALSPKQKGF 114 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~--~~~~~~~~~~~~d~~~~~~-~-~l~~~~~~~~~~ 114 (186)
+|+.+|--|++.| ++..+++.+-. .|.+|+.+|.+++.++. .....+..+++.|+++... . .+......-++.
T Consensus 28 ~gKvalVTGas~G-IG~aiA~~la~--~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i 104 (273)
T 4fgs_A 28 NAKIAVITGATSG-IGLAAAKRFVA--EGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRI 104 (273)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCE
T ss_pred CCCEEEEeCcCCH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 4667777776554 77777766654 27899999998876543 1223467788899887541 1 111111112579
Q ss_pred cEEEeCCC
Q 038391 115 SVILSDMC 122 (186)
Q Consensus 115 D~V~~d~~ 122 (186)
|+++.|..
T Consensus 105 DiLVNNAG 112 (273)
T 4fgs_A 105 DVLFVNAG 112 (273)
T ss_dssp EEEEECCC
T ss_pred CEEEECCC
Confidence 99999864
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=90.63 E-value=0.37 Score=38.02 Aligned_cols=82 Identities=13% Similarity=0.048 Sum_probs=49.1
Q ss_pred CCCEEEEEcccCC-hHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCCh--hhHhhhCC
Q 038391 39 PGSSVLDLGCAPG-AWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPS--NQVRALSP 109 (186)
Q Consensus 39 ~~~~vLDlGcG~G-~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~--~~l~~~~~ 109 (186)
.++++|-.|++.+ +++..+++.+-. .+.+|+.++.++...+. .....++.+++.|+++... ..+.....
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHE--AGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKE 83 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHH--TTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHH--CCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHH
Confidence 4678888888732 466666665533 16799999887543211 1122368899999987641 11111111
Q ss_pred CCCCccEEEeCCC
Q 038391 110 KQKGFSVILSDMC 122 (186)
Q Consensus 110 ~~~~~D~V~~d~~ 122 (186)
..+.+|+++.+..
T Consensus 84 ~~g~id~li~~Ag 96 (266)
T 3oig_A 84 QVGVIHGIAHCIA 96 (266)
T ss_dssp HHSCCCEEEECCC
T ss_pred HhCCeeEEEEccc
Confidence 1247899998764
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=90.56 E-value=0.13 Score=44.45 Aligned_cols=41 Identities=20% Similarity=0.227 Sum_probs=31.2
Q ss_pred CCCCCCEEEEEcc-cC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 36 LIKPGSSVLDLGC-AP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 36 ~~~~~~~vLDlGc-G~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
.+++|++||-+|+ |+ |..+..+++.. +.+|++++.++..++
T Consensus 225 ~~~~g~~VlV~GasG~vG~~avqlak~~-----Ga~vi~~~~~~~~~~ 267 (456)
T 3krt_A 225 GMKQGDNVLIWGASGGLGSYATQFALAG-----GANPICVVSSPQKAE 267 (456)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHT-----TCEEEEEESSHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHc-----CCeEEEEECCHHHHH
Confidence 4688999999998 43 66777777765 579999998776644
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=90.54 E-value=0.2 Score=46.30 Aligned_cols=42 Identities=17% Similarity=0.148 Sum_probs=29.5
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCC-CeEEEEeCCCCCCCC
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNG-GSVVGIDVKKVKVPS 82 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~-~~v~gvDis~~~i~~ 82 (186)
-+|+||.||.|+++.-|.+.....+.. -.++++|+++.+++-
T Consensus 213 ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~T 255 (784)
T 4ft4_B 213 ATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQS 255 (784)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHH
T ss_pred CeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHH
Confidence 479999999999999888762100000 258899999987543
|
| >4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus} | Back alignment and structure |
|---|
Probab=90.32 E-value=0.29 Score=44.13 Aligned_cols=52 Identities=19% Similarity=0.257 Sum_probs=36.2
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
..+||+|++|+.-.+..+|--.-+...-.....-..+++ +|+|||+++++.+
T Consensus 219 ~~ryDlvfvn~~t~yr~HHyqQCeDHa~~l~ml~~~al~------------------~l~pGGt~v~~~Y 270 (670)
T 4gua_A 219 QARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALN------------------CLNPGGTLVVKSY 270 (670)
T ss_dssp CCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHH------------------TEEEEEEEEEEES
T ss_pred CCcccEEEEecCCCcccchHHHHHHHHHHHHHHhHHHHh------------------hcCCCceEEEEEe
Confidence 469999999986555555544444433344455555666 9999999999876
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=89.99 E-value=0.15 Score=40.61 Aligned_cols=82 Identities=11% Similarity=0.125 Sum_probs=51.2
Q ss_pred CCCEEEEEcc-cCChHHHHHHHHhCCCCCCCeEEEEeCCCCCC-CC--cCCCCCeEEEEeeecCCCh-h-hHhhhCC---
Q 038391 39 PGSSVLDLGC-APGAWLQVACQSLGPLDNGGSVVGIDVKKVKV-PS--LHCDARVQTVSADVINLPS-N-QVRALSP--- 109 (186)
Q Consensus 39 ~~~~vLDlGc-G~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i-~~--~~~~~~~~~~~~d~~~~~~-~-~l~~~~~--- 109 (186)
+++++|-.|+ |+|+++..+++.+-. .+.+|+.++.++... .. .....++.+++.|+++... . .+.....
T Consensus 6 ~~k~vlVTGa~~s~gIG~aia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 83 (269)
T 2h7i_A 6 DGKRILVSGIITDSSIAFHIARVAQE--QGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIG 83 (269)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHH--TTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCchHHHHHHHHHH--CCCEEEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHhC
Confidence 3678888898 488889888887653 267999999876431 11 1122357788889876431 1 1111110
Q ss_pred CCCCccEEEeCCC
Q 038391 110 KQKGFSVILSDMC 122 (186)
Q Consensus 110 ~~~~~D~V~~d~~ 122 (186)
..+.+|+++.+..
T Consensus 84 ~~~~iD~lv~nAg 96 (269)
T 2h7i_A 84 AGNKLDGVVHSIG 96 (269)
T ss_dssp TTCCEEEEEECCC
T ss_pred CCCCceEEEECCc
Confidence 0127999999864
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=89.93 E-value=0.074 Score=44.36 Aligned_cols=77 Identities=17% Similarity=0.116 Sum_probs=44.3
Q ss_pred CCCCCCCEEEEEcc-c-CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh-hhHhhhCCCC
Q 038391 35 KLIKPGSSVLDLGC-A-PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQ 111 (186)
Q Consensus 35 ~~~~~~~~vLDlGc-G-~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~-~~l~~~~~~~ 111 (186)
..+++|++||-.|+ | .|..+..+++.. +.+|+++|.++..++......-... .|..+... ..+.+.. +
T Consensus 163 ~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~-----Ga~Vi~~~~~~~~~~~~~~lGa~~~--~~~~~~~~~~~~~~~~--~ 233 (353)
T 4dup_A 163 AGLTEGESVLIHGGTSGIGTTAIQLARAF-----GAEVYATAGSTGKCEACERLGAKRG--INYRSEDFAAVIKAET--G 233 (353)
T ss_dssp TCCCTTCEEEESSTTSHHHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHHHTCSEE--EETTTSCHHHHHHHHH--S
T ss_pred cCCCCCCEEEEEcCCCHHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHhcCCCEE--EeCCchHHHHHHHHHh--C
Confidence 44788999998853 3 355666666664 5799999998876543211110111 23322221 2333333 4
Q ss_pred CCccEEEeC
Q 038391 112 KGFSVILSD 120 (186)
Q Consensus 112 ~~~D~V~~d 120 (186)
+.+|+|+..
T Consensus 234 ~g~Dvvid~ 242 (353)
T 4dup_A 234 QGVDIILDM 242 (353)
T ss_dssp SCEEEEEES
T ss_pred CCceEEEEC
Confidence 689999973
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=89.76 E-value=0.27 Score=40.83 Aligned_cols=78 Identities=23% Similarity=0.250 Sum_probs=43.2
Q ss_pred CCCCCC--CEEEEEccc--CChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh-hhHhhhC
Q 038391 35 KLIKPG--SSVLDLGCA--PGAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALS 108 (186)
Q Consensus 35 ~~~~~~--~~vLDlGcG--~G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~-~~l~~~~ 108 (186)
..++++ ++||-.|++ .|.....++... +. +|+++|.++..++.......... ..|..+... ..+.+..
T Consensus 154 ~~~~~g~~~~vlI~GasggiG~~~~~~a~~~-----Ga~~Vi~~~~~~~~~~~~~~~~g~~~-~~d~~~~~~~~~~~~~~ 227 (357)
T 2zb4_A 154 GHITAGSNKTMVVSGAAGACGSVAGQIGHFL-----GCSRVVGICGTHEKCILLTSELGFDA-AINYKKDNVAEQLRESC 227 (357)
T ss_dssp SCCCTTSCCEEEESSTTBHHHHHHHHHHHHT-----TCSEEEEEESCHHHHHHHHHTSCCSE-EEETTTSCHHHHHHHHC
T ss_pred cCCCCCCccEEEEECCCcHHHHHHHHHHHHC-----CCCeEEEEeCCHHHHHHHHHHcCCce-EEecCchHHHHHHHHhc
Confidence 447889 999999983 244445555544 46 99999998765433111001111 124433221 2333443
Q ss_pred CCCCCccEEEeC
Q 038391 109 PKQKGFSVILSD 120 (186)
Q Consensus 109 ~~~~~~D~V~~d 120 (186)
. + .+|+++..
T Consensus 228 ~-~-~~d~vi~~ 237 (357)
T 2zb4_A 228 P-A-GVDVYFDN 237 (357)
T ss_dssp T-T-CEEEEEES
T ss_pred C-C-CCCEEEEC
Confidence 2 3 79999974
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=89.56 E-value=0.18 Score=43.33 Aligned_cols=43 Identities=23% Similarity=0.267 Sum_probs=31.1
Q ss_pred CCCCCCCEEEEEcc-cC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 35 KLIKPGSSVLDLGC-AP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 35 ~~~~~~~~vLDlGc-G~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
..+++|++||-.|+ |. |..+..+++.. +.+|++++.++..++.
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~-----Ga~vi~~~~~~~~~~~ 260 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNG-----GGIPVAVVSSAQKEAA 260 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHT-----TCEEEEEESSHHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHc-----CCEEEEEeCCHHHHHH
Confidence 34788999999997 32 56666666664 5799999987766443
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=89.53 E-value=0.23 Score=47.69 Aligned_cols=78 Identities=12% Similarity=0.028 Sum_probs=50.0
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCC--eEEEEeCCCCCCCC-cCCCCCeEEEEeeecCCChh----hH-----hhhC
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGG--SVVGIDVKKVKVPS-LHCDARVQTVSADVINLPSN----QV-----RALS 108 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~--~v~gvDis~~~i~~-~~~~~~~~~~~~d~~~~~~~----~l-----~~~~ 108 (186)
-+++||.||.|+++.-+.+. |. .|+++|+++....- ........++.+|+..+... .+ ..++
T Consensus 541 l~~iDLFaG~GGlslGl~~A------G~~~vv~avEid~~A~~ty~~N~p~~~~~~~DI~~l~~~~~~~di~~~~~~~lp 614 (1002)
T 3swr_A 541 LRTLDVFSGCGGLSEGFHQA------GISDTLWAIEMWDPAAQAFRLNNPGSTVFTEDCNILLKLVMAGETTNSRGQRLP 614 (1002)
T ss_dssp EEEEEESCTTSHHHHHHHHH------TSEEEEEEECSSHHHHHHHHHHCTTSEEECSCHHHHHHHHHHTCSBCTTCCBCC
T ss_pred CeEEEeccCccHHHHHHHHC------CCCceEEEEECCHHHHHHHHHhCCCCccccccHHHHhhhccchhhhhhhhhhcc
Confidence 37999999999999999886 43 58899999988543 22233455666665432100 00 0011
Q ss_pred CCCCCccEEEeCCCCCC
Q 038391 109 PKQKGFSVILSDMCPSV 125 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~ 125 (186)
..+.+|+|+...+|..
T Consensus 615 -~~~~vDll~GGpPCQ~ 630 (1002)
T 3swr_A 615 -QKGDVEMLCGGPPCQG 630 (1002)
T ss_dssp -CTTTCSEEEECCCCTT
T ss_pred -cCCCeeEEEEcCCCcc
Confidence 1357999999877643
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.50 E-value=0.35 Score=40.51 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=27.5
Q ss_pred CCCCCEEEEEcc-cC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCC
Q 038391 37 IKPGSSVLDLGC-AP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKV 80 (186)
Q Consensus 37 ~~~~~~vLDlGc-G~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i 80 (186)
+++|++||-.|+ |+ |.....+++.. +.+|++++ ++...
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~-----Ga~Vi~~~-~~~~~ 220 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAW-----DAHVTAVC-SQDAS 220 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHT-----TCEEEEEE-CGGGH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhC-----CCEEEEEe-ChHHH
Confidence 678999999994 43 56666666665 46999998 65543
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.18 E-value=0.16 Score=41.59 Aligned_cols=79 Identities=16% Similarity=0.111 Sum_probs=43.8
Q ss_pred cCCCCCCCEEEEEccc--CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh-hhHhhhCCC
Q 038391 34 YKLIKPGSSVLDLGCA--PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPK 110 (186)
Q Consensus 34 ~~~~~~~~~vLDlGcG--~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~-~~l~~~~~~ 110 (186)
...++++++||-.|++ .|.....++... +.+|+++|.++..++..... .... ..|..+... ..+.+...
T Consensus 135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-----G~~V~~~~~~~~~~~~~~~~-g~~~-~~~~~~~~~~~~~~~~~~- 206 (327)
T 1qor_A 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKAL-----GAKLIGTVGTAQKAQSALKA-GAWQ-VINYREEDLVERLKEITG- 206 (327)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHH-----TCEEEEEESSHHHHHHHHHH-TCSE-EEETTTSCHHHHHHHHTT-
T ss_pred hhCCCCCCEEEEECCCCHHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHc-CCCE-EEECCCccHHHHHHHHhC-
Confidence 3347889999999842 345555555554 57999999987654331110 1111 123333221 23333332
Q ss_pred CCCccEEEeC
Q 038391 111 QKGFSVILSD 120 (186)
Q Consensus 111 ~~~~D~V~~d 120 (186)
+..+|+++..
T Consensus 207 ~~~~D~vi~~ 216 (327)
T 1qor_A 207 GKKVRVVYDS 216 (327)
T ss_dssp TCCEEEEEEC
T ss_pred CCCceEEEEC
Confidence 3479999974
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=88.74 E-value=0.15 Score=42.36 Aligned_cols=74 Identities=14% Similarity=0.169 Sum_probs=43.1
Q ss_pred CCCCCCCEEEEEcc-c-CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCC-hhhHhhhCCCC
Q 038391 35 KLIKPGSSVLDLGC-A-PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLP-SNQVRALSPKQ 111 (186)
Q Consensus 35 ~~~~~~~~vLDlGc-G-~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~-~~~l~~~~~~~ 111 (186)
..+++|++||-+|+ | .|..+..+++.. +.+|+++ .++..++..... .... .| .... ...+.... .+
T Consensus 146 ~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~-----Ga~Vi~~-~~~~~~~~~~~l-Ga~~--i~-~~~~~~~~~~~~~-~~ 214 (343)
T 3gaz_A 146 AQVQDGQTVLIQGGGGGVGHVAIQIALAR-----GARVFAT-ARGSDLEYVRDL-GATP--ID-ASREPEDYAAEHT-AG 214 (343)
T ss_dssp TCCCTTCEEEEETTTSHHHHHHHHHHHHT-----TCEEEEE-ECHHHHHHHHHH-TSEE--EE-TTSCHHHHHHHHH-TT
T ss_pred cCCCCCCEEEEecCCCHHHHHHHHHHHHC-----CCEEEEE-eCHHHHHHHHHc-CCCE--ec-cCCCHHHHHHHHh-cC
Confidence 34688999999994 4 366667777765 5799999 776654332111 1122 22 2222 12333333 24
Q ss_pred CCccEEEe
Q 038391 112 KGFSVILS 119 (186)
Q Consensus 112 ~~~D~V~~ 119 (186)
..+|+|+.
T Consensus 215 ~g~D~vid 222 (343)
T 3gaz_A 215 QGFDLVYD 222 (343)
T ss_dssp SCEEEEEE
T ss_pred CCceEEEE
Confidence 68999987
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=88.63 E-value=3.4 Score=29.72 Aligned_cols=75 Identities=16% Similarity=0.252 Sum_probs=45.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
..++.+|+-+|| |.++..+++.+.. .+.+|+++|.++..+..........++.+|..+. ..+... .-..+|+
T Consensus 16 ~~~~~~v~IiG~--G~iG~~la~~L~~--~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~--~~l~~~--~~~~ad~ 87 (155)
T 2g1u_A 16 KQKSKYIVIFGC--GRLGSLIANLASS--SGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEF--ETLKEC--GMEKADM 87 (155)
T ss_dssp -CCCCEEEEECC--SHHHHHHHHHHHH--TTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSH--HHHHTT--TGGGCSE
T ss_pred ccCCCcEEEECC--CHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCH--HHHHHc--CcccCCE
Confidence 456789999986 6666666665532 1568999999988765433122345566665432 222221 1246899
Q ss_pred EEe
Q 038391 117 ILS 119 (186)
Q Consensus 117 V~~ 119 (186)
|+.
T Consensus 88 Vi~ 90 (155)
T 2g1u_A 88 VFA 90 (155)
T ss_dssp EEE
T ss_pred EEE
Confidence 987
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=88.61 E-value=0.19 Score=42.05 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=24.5
Q ss_pred CCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCC
Q 038391 40 GSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKK 77 (186)
Q Consensus 40 ~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~ 77 (186)
|++||-+|+|. |.....+++.. +.+|+++|.++
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~-----Ga~Vi~~~~~~ 214 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTY-----GLEVWMANRRE 214 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHH-----TCEEEEEESSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-----CCEEEEEeCCc
Confidence 99999999843 44445555554 46999999988
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=88.57 E-value=0.19 Score=41.26 Aligned_cols=78 Identities=21% Similarity=0.258 Sum_probs=43.8
Q ss_pred CCCCCCCEEEEEcc--cCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh-hhHhhhCCCC
Q 038391 35 KLIKPGSSVLDLGC--APGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQ 111 (186)
Q Consensus 35 ~~~~~~~~vLDlGc--G~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~-~~l~~~~~~~ 111 (186)
..++++++||-.|+ |.|.....++... +.+|+++|.++..++..... .... ..|..+... ..+.+... +
T Consensus 141 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-----G~~Vi~~~~~~~~~~~~~~~-g~~~-~~d~~~~~~~~~i~~~~~-~ 212 (333)
T 1wly_A 141 HKVKPGDYVLIHAAAGGMGHIMVPWARHL-----GATVIGTVSTEEKAETARKL-GCHH-TINYSTQDFAEVVREITG-G 212 (333)
T ss_dssp SCCCTTCEEEETTTTSTTHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHHH-TCSE-EEETTTSCHHHHHHHHHT-T
T ss_pred hCCCCCCEEEEECCccHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHHc-CCCE-EEECCCHHHHHHHHHHhC-C
Confidence 34788999999996 3355555555554 57999999988654331110 1111 124333221 22333322 3
Q ss_pred CCccEEEeC
Q 038391 112 KGFSVILSD 120 (186)
Q Consensus 112 ~~~D~V~~d 120 (186)
..+|+++..
T Consensus 213 ~~~d~vi~~ 221 (333)
T 1wly_A 213 KGVDVVYDS 221 (333)
T ss_dssp CCEEEEEEC
T ss_pred CCCeEEEEC
Confidence 579999974
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.24 E-value=0.19 Score=39.61 Aligned_cols=83 Identities=10% Similarity=-0.012 Sum_probs=51.3
Q ss_pred CCCCEEEEEccc-CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCCCCeEEEEeeecCCCh--hhHhhhCCC
Q 038391 38 KPGSSVLDLGCA-PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCDARVQTVSADVINLPS--NQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG-~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~ 110 (186)
.++++||-.|++ +|+++..+++.+-. .+.+|+.++.+...... .....++.+++.|+++... ..+......
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 89 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKR--EGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTH 89 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHH--TTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHH--cCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 457889988885 47788888777643 16799999987533211 1122347788899887531 111111111
Q ss_pred CCCccEEEeCCC
Q 038391 111 QKGFSVILSDMC 122 (186)
Q Consensus 111 ~~~~D~V~~d~~ 122 (186)
.+.+|+++.+..
T Consensus 90 ~g~id~lv~nAg 101 (271)
T 3ek2_A 90 WDSLDGLVHSIG 101 (271)
T ss_dssp CSCEEEEEECCC
T ss_pred cCCCCEEEECCc
Confidence 257999999764
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=88.02 E-value=0.38 Score=40.19 Aligned_cols=76 Identities=14% Similarity=0.143 Sum_probs=44.3
Q ss_pred CCCCCCCEEEEEc-cc-CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh-hhHhhhCCCC
Q 038391 35 KLIKPGSSVLDLG-CA-PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQ 111 (186)
Q Consensus 35 ~~~~~~~~vLDlG-cG-~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~-~~l~~~~~~~ 111 (186)
..+++|++||-.| +| .|.....+++.. +.+|++++.++..++..... ....+ .|..+... ..+.... +
T Consensus 159 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~-----Ga~Vi~~~~~~~~~~~~~~~-Ga~~~-~~~~~~~~~~~~~~~~--~ 229 (362)
T 2c0c_A 159 GGLSEGKKVLVTAAAGGTGQFAMQLSKKA-----KCHVIGTCSSDEKSAFLKSL-GCDRP-INYKTEPVGTVLKQEY--P 229 (362)
T ss_dssp TCCCTTCEEEETTTTBTTHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHHT-TCSEE-EETTTSCHHHHHHHHC--T
T ss_pred cCCCCCCEEEEeCCCcHHHHHHHHHHHhC-----CCEEEEEECCHHHHHHHHHc-CCcEE-EecCChhHHHHHHHhc--C
Confidence 3478899999999 34 366777777765 46999999987664332111 11111 12222221 2233332 3
Q ss_pred CCccEEEe
Q 038391 112 KGFSVILS 119 (186)
Q Consensus 112 ~~~D~V~~ 119 (186)
..+|+|+.
T Consensus 230 ~g~D~vid 237 (362)
T 2c0c_A 230 EGVDVVYE 237 (362)
T ss_dssp TCEEEEEE
T ss_pred CCCCEEEE
Confidence 57999987
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.96 E-value=0.18 Score=41.34 Aligned_cols=42 Identities=19% Similarity=0.112 Sum_probs=30.9
Q ss_pred CCCCCC-EEEEEcc-c-CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 36 LIKPGS-SVLDLGC-A-PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~-~vLDlGc-G-~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.+++++ +||-+|+ | .|..+..+++.. +.+|++++.++..++.
T Consensus 145 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~-----Ga~vi~~~~~~~~~~~ 189 (328)
T 1xa0_A 145 GLTPERGPVLVTGATGGVGSLAVSMLAKR-----GYTVEASTGKAAEHDY 189 (328)
T ss_dssp TCCGGGCCEEESSTTSHHHHHHHHHHHHT-----TCCEEEEESCTTCHHH
T ss_pred CCCCCCceEEEecCCCHHHHHHHHHHHHC-----CCEEEEEECCHHHHHH
Confidence 367775 8999997 3 366667777765 4689999999877543
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=87.94 E-value=0.16 Score=41.53 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=27.5
Q ss_pred EEEEEcc-c-CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 42 SVLDLGC-A-PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 42 ~vLDlGc-G-~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
+||-.|+ | .|..+..+++.. +.+|++++.+++.++.
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~-----Ga~Vi~~~~~~~~~~~ 186 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKL-----GYQVAAVSGRESTHGY 186 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHT-----TCCEEEEESCGGGHHH
T ss_pred eEEEECCCcHHHHHHHHHHHHc-----CCEEEEEeCCHHHHHH
Confidence 4999987 3 377777777775 5699999999887544
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=87.44 E-value=0.26 Score=39.91 Aligned_cols=81 Identities=15% Similarity=0.131 Sum_probs=48.9
Q ss_pred CCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCCCCeEEEEeeecCCCh--hhHhhhCCCCC
Q 038391 40 GSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCDARVQTVSADVINLPS--NQVRALSPKQK 112 (186)
Q Consensus 40 ~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~ 112 (186)
++++|-.|++. .+++..+++.+-. .+.+|+.+|.++...+. .....++.+++.|+++... ..+......-+
T Consensus 30 ~k~vlVTGasg~~GIG~~ia~~la~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 107 (296)
T 3k31_A 30 GKKGVIIGVANDKSLAWGIAKAVCA--QGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEWG 107 (296)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHH--TTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHH--CCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 67888888764 4677777766543 16799999988643221 1111346788899887531 11111111114
Q ss_pred CccEEEeCCC
Q 038391 113 GFSVILSDMC 122 (186)
Q Consensus 113 ~~D~V~~d~~ 122 (186)
.+|+++.+..
T Consensus 108 ~iD~lVnnAG 117 (296)
T 3k31_A 108 SLDFVVHAVA 117 (296)
T ss_dssp CCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 7999999764
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=87.33 E-value=2 Score=32.15 Aligned_cols=69 Identities=17% Similarity=0.198 Sum_probs=47.5
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCC
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~ 121 (186)
+||-.| |+|+++..+++.+-.. +.+|++++-++..+.... .+++++.+|+.+.... .+ ..+|+|+...
T Consensus 2 kvlVtG-atG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~~--~~~~~~~~D~~d~~~~---~~----~~~d~vi~~a 69 (221)
T 3ew7_A 2 KIGIIG-ATGRAGSRILEEAKNR--GHEVTAIVRNAGKITQTH--KDINILQKDIFDLTLS---DL----SDQNVVVDAY 69 (221)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHT--TCEEEEEESCSHHHHHHC--SSSEEEECCGGGCCHH---HH----TTCSEEEECC
T ss_pred eEEEEc-CCchhHHHHHHHHHhC--CCEEEEEEcCchhhhhcc--CCCeEEeccccChhhh---hh----cCCCEEEECC
Confidence 455555 4688888888776431 579999998876543211 5688999999887542 22 4689999866
Q ss_pred C
Q 038391 122 C 122 (186)
Q Consensus 122 ~ 122 (186)
.
T Consensus 70 g 70 (221)
T 3ew7_A 70 G 70 (221)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=86.73 E-value=0.54 Score=37.10 Aligned_cols=81 Identities=12% Similarity=0.180 Sum_probs=50.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc--CCCCCeEEEEeeecCCCh-h-hHhhhCCCCCCc
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL--HCDARVQTVSADVINLPS-N-QVRALSPKQKGF 114 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~--~~~~~~~~~~~d~~~~~~-~-~l~~~~~~~~~~ 114 (186)
.++++|--|++ |+++..+++.+-. .+.+|+.+|.++..+... ....++.+++.|+++... . .+......-+.+
T Consensus 7 ~gk~~lVTGas-~gIG~a~a~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 83 (255)
T 4eso_A 7 QGKKAIVIGGT-HGMGLATVRRLVE--GGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAI 83 (255)
T ss_dssp TTCEEEEETCS-SHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSSE
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 46678877755 5677777776643 167999999887654331 123468888999887531 1 111111112479
Q ss_pred cEEEeCCC
Q 038391 115 SVILSDMC 122 (186)
Q Consensus 115 D~V~~d~~ 122 (186)
|+++.+..
T Consensus 84 d~lv~nAg 91 (255)
T 4eso_A 84 DLLHINAG 91 (255)
T ss_dssp EEEEECCC
T ss_pred CEEEECCC
Confidence 99998764
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=86.56 E-value=0.85 Score=37.88 Aligned_cols=78 Identities=23% Similarity=0.294 Sum_probs=44.6
Q ss_pred CCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 35 KLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
..+++|++||-+|+|+ |.....+++.++ +.+|+++|.++..++......--.++ |..+.....+.++.. +..
T Consensus 182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~----Ga~Vi~~~~~~~~~~~~~~lGa~~vi--~~~~~~~~~v~~~~~-g~g 254 (359)
T 1h2b_A 182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMT----PATVIALDVKEEKLKLAERLGADHVV--DARRDPVKQVMELTR-GRG 254 (359)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHC----CCEEEEEESSHHHHHHHHHTTCSEEE--ETTSCHHHHHHHHTT-TCC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC----CCeEEEEeCCHHHHHHHHHhCCCEEE--eccchHHHHHHHHhC-CCC
Confidence 4478999999999863 445555666651 36899999988765432111111111 222221123344432 447
Q ss_pred ccEEEe
Q 038391 114 FSVILS 119 (186)
Q Consensus 114 ~D~V~~ 119 (186)
+|+|+-
T Consensus 255 ~Dvvid 260 (359)
T 1h2b_A 255 VNVAMD 260 (359)
T ss_dssp EEEEEE
T ss_pred CcEEEE
Confidence 999987
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=86.43 E-value=0.56 Score=46.30 Aligned_cols=78 Identities=12% Similarity=0.028 Sum_probs=48.3
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCC--eEEEEeCCCCCCCC-cCCCCCeEEEEeeecCCChhhH---------hhhC
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGG--SVVGIDVKKVKVPS-LHCDARVQTVSADVINLPSNQV---------RALS 108 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~--~v~gvDis~~~i~~-~~~~~~~~~~~~d~~~~~~~~l---------~~~~ 108 (186)
-+++||.||.|+++.-+.+. |. .|+++|+.+.++.- ........++.+|+..+....+ ..+.
T Consensus 852 l~viDLFsG~GGlslGfe~A------G~~~vv~avEid~~A~~ty~~N~p~~~~~~~DI~~l~~~~~~gdi~~~~~~~lp 925 (1330)
T 3av4_A 852 LRTLDVFSGCGGLSEGFHQA------GISETLWAIEMWDPAAQAFRLNNPGTTVFTEDCNVLLKLVMAGEVTNSLGQRLP 925 (1330)
T ss_dssp EEEEEETCTTSHHHHHHHHT------TSEEEEEEECCSHHHHHHHHHHCTTSEEECSCHHHHHHHHTTTCSBCSSCCBCC
T ss_pred ceEEecccCccHHHHHHHHC------CCCceEEEEECCHHHHHHHHHhCCCCcEeeccHHHHhHhhhccchhhhhhhhcc
Confidence 47999999999999998875 43 58899999987543 1122334455555542210000 0010
Q ss_pred CCCCCccEEEeCCCCCC
Q 038391 109 PKQKGFSVILSDMCPSV 125 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~ 125 (186)
..+.+|+|+...+|..
T Consensus 926 -~~~~vDvl~GGpPCQ~ 941 (1330)
T 3av4_A 926 -QKGDVEMLCGGPPCQG 941 (1330)
T ss_dssp -CTTTCSEEEECCCCTT
T ss_pred -ccCccceEEecCCCcc
Confidence 1347899999877643
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=86.36 E-value=0.26 Score=40.33 Aligned_cols=42 Identities=21% Similarity=0.150 Sum_probs=30.9
Q ss_pred CCCCCC-EEEEEcc-c-CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 36 LIKPGS-SVLDLGC-A-PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~-~vLDlGc-G-~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.+++++ +||-+|+ | .|..+..+++.. +.+|++++.++..++.
T Consensus 146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~-----Ga~vi~~~~~~~~~~~ 190 (330)
T 1tt7_A 146 GLSPEKGSVLVTGATGGVGGIAVSMLNKR-----GYDVVASTGNREAADY 190 (330)
T ss_dssp TCCGGGCCEEEESTTSHHHHHHHHHHHHH-----TCCEEEEESSSSTHHH
T ss_pred CcCCCCceEEEECCCCHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHH
Confidence 367775 8999998 3 366667777766 4689999999877543
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=86.31 E-value=1.4 Score=35.47 Aligned_cols=81 Identities=9% Similarity=0.135 Sum_probs=49.2
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCCh--hhHhhhCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPS--NQVRALSPK 110 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~--~~l~~~~~~ 110 (186)
+++++|--|++ |+++..+++.+-. .+.+|+.++.++..... .....++.+++.|+++... ..+......
T Consensus 46 ~gk~vlVTGas-~GIG~aia~~la~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 122 (291)
T 3ijr_A 46 KGKNVLITGGD-SGIGRAVSIAFAK--EGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQ 122 (291)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHH--TTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHH--CCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35677777754 5677777776643 16799999988653111 1233578888999887531 111111111
Q ss_pred CCCccEEEeCCC
Q 038391 111 QKGFSVILSDMC 122 (186)
Q Consensus 111 ~~~~D~V~~d~~ 122 (186)
-+.+|+++.+..
T Consensus 123 ~g~iD~lvnnAg 134 (291)
T 3ijr_A 123 LGSLNILVNNVA 134 (291)
T ss_dssp HSSCCEEEECCC
T ss_pred cCCCCEEEECCC
Confidence 247999998764
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=86.28 E-value=0.17 Score=42.45 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=28.7
Q ss_pred CC-CCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 37 IK-PGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 37 ~~-~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
++ +|++||-+|+|. |.....+++.+ +.+|++++.++..++
T Consensus 184 ~~~~g~~VlV~GaG~vG~~~~q~a~~~-----Ga~Vi~~~~~~~~~~ 225 (366)
T 1yqd_A 184 LDEPGKHIGIVGLGGLGHVAVKFAKAF-----GSKVTVISTSPSKKE 225 (366)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHT-----TCEEEEEESCGGGHH
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHC-----CCEEEEEeCCHHHHH
Confidence 56 899999999753 44445555554 569999999887654
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=86.22 E-value=0.32 Score=44.08 Aligned_cols=39 Identities=10% Similarity=0.004 Sum_probs=26.9
Q ss_pred CCEEEEEcccCChHHHHHHHHhC--------CCCCCCeEEEEeCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLG--------PLDNGGSVVGIDVKKV 78 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~--------~~~~~~~v~gvDis~~ 78 (186)
.-+|||+|-|+|.......+.+. ..+...+++++|..|-
T Consensus 67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~ 113 (676)
T 3ps9_A 67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPL 113 (676)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCC
T ss_pred ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCC
Confidence 34899999999988877776541 1001247999998553
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=86.12 E-value=6.8 Score=31.87 Aligned_cols=79 Identities=15% Similarity=0.127 Sum_probs=50.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC-------C---CC--cCCCCCeEEEEeeecCCChhhHhh
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK-------V---PS--LHCDARVQTVSADVINLPSNQVRA 106 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~-------i---~~--~~~~~~~~~~~~d~~~~~~~~l~~ 106 (186)
.+.+||-.| |+|+++..+++.+-..+.+.+|+++|.++.. . .. .....++.++.+|+.+.. .+..
T Consensus 9 ~~~~vlVTG-atG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~--~~~~ 85 (362)
T 3sxp_A 9 ENQTILITG-GAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPL--DLRR 85 (362)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHH--HHHH
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHH--HHHH
Confidence 356788777 6788998888776320016799999986651 1 11 122346788999987643 3444
Q ss_pred hCCCCCCccEEEeCCC
Q 038391 107 LSPKQKGFSVILSDMC 122 (186)
Q Consensus 107 ~~~~~~~~D~V~~d~~ 122 (186)
+ ....+|+|+..+.
T Consensus 86 ~--~~~~~D~vih~A~ 99 (362)
T 3sxp_A 86 L--EKLHFDYLFHQAA 99 (362)
T ss_dssp H--TTSCCSEEEECCC
T ss_pred h--hccCCCEEEECCc
Confidence 4 1357999998654
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=85.99 E-value=0.14 Score=42.74 Aligned_cols=78 Identities=14% Similarity=0.033 Sum_probs=43.1
Q ss_pred CCCCCCCEEEEEccc--CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCC-hhhHhhhCCCC
Q 038391 35 KLIKPGSSVLDLGCA--PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLP-SNQVRALSPKQ 111 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG--~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~-~~~l~~~~~~~ 111 (186)
..+++|++||-.|++ .|..+..++... +.+|+++|.++..++..... .... ..|..+.. ...+.... .+
T Consensus 158 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-----Ga~Vi~~~~~~~~~~~~~~~-g~~~-~~~~~~~~~~~~~~~~~-~~ 229 (354)
T 2j8z_A 158 GNVQAGDYVLIHAGLSGVGTAAIQLTRMA-----GAIPLVTAGSQKKLQMAEKL-GAAA-GFNYKKEDFSEATLKFT-KG 229 (354)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHT-----TCEEEEEESCHHHHHHHHHH-TCSE-EEETTTSCHHHHHHHHT-TT
T ss_pred cCCCCCCEEEEECCccHHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHc-CCcE-EEecCChHHHHHHHHHh-cC
Confidence 346889999999853 244444555543 57999999988664432110 0111 12333322 12333333 24
Q ss_pred CCccEEEeC
Q 038391 112 KGFSVILSD 120 (186)
Q Consensus 112 ~~~D~V~~d 120 (186)
..+|+++..
T Consensus 230 ~~~d~vi~~ 238 (354)
T 2j8z_A 230 AGVNLILDC 238 (354)
T ss_dssp SCEEEEEES
T ss_pred CCceEEEEC
Confidence 579999974
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=85.51 E-value=0.98 Score=35.12 Aligned_cols=81 Identities=15% Similarity=0.058 Sum_probs=48.1
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCC-CCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCCh--hhHhhhCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGP-LDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPS--NQVRALSPK 110 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~-~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~ 110 (186)
++++||-.| |+|+++..+++.+-. . +.+|+.++.++..... .....++.++..|+++... ..+..+...
T Consensus 3 ~~k~vlITG-asggIG~~~a~~L~~~~--g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (276)
T 1wma_A 3 GIHVALVTG-GNKGIGLAIVRDLCRLF--SGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKE 79 (276)
T ss_dssp CCCEEEESS-CSSHHHHHHHHHHHHHS--SSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHhc--CCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHh
Confidence 456777556 668888888876532 1 5789999887644321 1113467888899876431 111111101
Q ss_pred CCCccEEEeCCC
Q 038391 111 QKGFSVILSDMC 122 (186)
Q Consensus 111 ~~~~D~V~~d~~ 122 (186)
-+.+|+|+.++.
T Consensus 80 ~g~id~li~~Ag 91 (276)
T 1wma_A 80 YGGLDVLVNNAG 91 (276)
T ss_dssp HSSEEEEEECCC
T ss_pred cCCCCEEEECCc
Confidence 137999998764
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=85.37 E-value=0.91 Score=36.02 Aligned_cols=82 Identities=13% Similarity=0.028 Sum_probs=50.7
Q ss_pred CCCEEEEEccc-CChHHHHHHHHhCCCCCCCeEEEEeCCCCC---CCC-cCCCCCeEEEEeeecCCCh--hhHhhhCCCC
Q 038391 39 PGSSVLDLGCA-PGAWLQVACQSLGPLDNGGSVVGIDVKKVK---VPS-LHCDARVQTVSADVINLPS--NQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG-~G~~~~~l~~~~~~~~~~~~v~gvDis~~~---i~~-~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~ 111 (186)
.++++|-.|++ +|+++..+++.+-.. +.+|+.++.++.. +.. .....++.++..|+++... ..+......-
T Consensus 5 ~~k~vlVTGas~~~gIG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 82 (275)
T 2pd4_A 5 KGKKGLIVGVANNKSIAYGIAQSCFNQ--GATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDL 82 (275)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHTT--TCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 36788888886 478888888877542 6799999988751 111 0111236788889876431 1111111112
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
+.+|+++.+..
T Consensus 83 g~id~lv~nAg 93 (275)
T 2pd4_A 83 GSLDFIVHSVA 93 (275)
T ss_dssp SCEEEEEECCC
T ss_pred CCCCEEEECCc
Confidence 47999999864
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=85.28 E-value=1.4 Score=35.15 Aligned_cols=78 Identities=17% Similarity=0.238 Sum_probs=53.2
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEE
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~ 118 (186)
.|+.+|--|++.| ++..+++.+-. .|.+|+.+|.+++.+... ...++..++.|+++.. .++.+...-++.|+++
T Consensus 10 ~GK~alVTGas~G-IG~aia~~la~--~Ga~Vv~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~--~v~~~~~~~g~iDiLV 83 (242)
T 4b79_A 10 AGQQVLVTGGSSG-IGAAIAMQFAE--LGAEVVALGLDADGVHAP-RHPRIRREELDITDSQ--RLQRLFEALPRLDVLV 83 (242)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHH--TTCEEEEEESSTTSTTSC-CCTTEEEEECCTTCHH--HHHHHHHHCSCCSEEE
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHH--CCCEEEEEeCCHHHHhhh-hcCCeEEEEecCCCHH--HHHHHHHhcCCCCEEE
Confidence 4777777777665 66666666543 278999999998887653 3357888889988643 2322222225799999
Q ss_pred eCCC
Q 038391 119 SDMC 122 (186)
Q Consensus 119 ~d~~ 122 (186)
.|..
T Consensus 84 NNAG 87 (242)
T 4b79_A 84 NNAG 87 (242)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9864
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=85.26 E-value=1.4 Score=34.73 Aligned_cols=82 Identities=11% Similarity=0.040 Sum_probs=51.1
Q ss_pred CCCEEEEEcccCC-hHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCCh--hhHhhhCC
Q 038391 39 PGSSVLDLGCAPG-AWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPS--NQVRALSP 109 (186)
Q Consensus 39 ~~~~vLDlGcG~G-~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~--~~l~~~~~ 109 (186)
+|+.+|--|++.+ +++..+++.+-. .|.+|+.+|.++..++. .....++.+++.|+++... ..++....
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~--~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQ--LGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGK 82 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHH--TTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 4778888887653 566666665543 17899999998766432 1223468888999887531 11111111
Q ss_pred CCCCccEEEeCCC
Q 038391 110 KQKGFSVILSDMC 122 (186)
Q Consensus 110 ~~~~~D~V~~d~~ 122 (186)
.-+..|+++.+..
T Consensus 83 ~~G~iD~lvnnAg 95 (256)
T 4fs3_A 83 DVGNIDGVYHSIA 95 (256)
T ss_dssp HHCCCSEEEECCC
T ss_pred HhCCCCEEEeccc
Confidence 1257999998764
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=84.97 E-value=0.83 Score=38.17 Aligned_cols=72 Identities=10% Similarity=0.026 Sum_probs=42.3
Q ss_pred CCCCEEEEEccc--CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCC-hhhHhhhCCCCCCc
Q 038391 38 KPGSSVLDLGCA--PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLP-SNQVRALSPKQKGF 114 (186)
Q Consensus 38 ~~~~~vLDlGcG--~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~-~~~l~~~~~~~~~~ 114 (186)
++|++||-+|++ .|.....+++.. +.+|+++. ++..++......-..++ |..... ...+.++. ++.+
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~-----Ga~Vi~~~-~~~~~~~~~~lGa~~vi--~~~~~~~~~~v~~~t--~g~~ 232 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLS-----GYIPIATC-SPHNFDLAKSRGAEEVF--DYRAPNLAQTIRTYT--KNNL 232 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHT-----TCEEEEEE-CGGGHHHHHHTTCSEEE--ETTSTTHHHHHHHHT--TTCC
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHC-----CCEEEEEe-CHHHHHHHHHcCCcEEE--ECCCchHHHHHHHHc--cCCc
Confidence 789999999983 477777778775 56899885 76664432111111122 222222 12344444 2359
Q ss_pred cEEEe
Q 038391 115 SVILS 119 (186)
Q Consensus 115 D~V~~ 119 (186)
|+|+-
T Consensus 233 d~v~d 237 (371)
T 3gqv_A 233 RYALD 237 (371)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 99986
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=84.85 E-value=2.2 Score=32.67 Aligned_cols=72 Identities=18% Similarity=0.167 Sum_probs=47.7
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCe-EEEEeeecCCChhhHhhhCCCCCCccEEE
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARV-QTVSADVINLPSNQVRALSPKQKGFSVIL 118 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~-~~~~~d~~~~~~~~l~~~~~~~~~~D~V~ 118 (186)
+.+||-.| |+|+++..+++.+-.. +.+|++++-++..+.... ..++ .++++|++ .. +... -+.+|.|+
T Consensus 21 ~~~ilVtG-atG~iG~~l~~~L~~~--G~~V~~~~R~~~~~~~~~-~~~~~~~~~~Dl~-~~---~~~~---~~~~D~vi 89 (236)
T 3e8x_A 21 GMRVLVVG-ANGKVARYLLSELKNK--GHEPVAMVRNEEQGPELR-ERGASDIVVANLE-ED---FSHA---FASIDAVV 89 (236)
T ss_dssp CCEEEEET-TTSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHH-HTTCSEEEECCTT-SC---CGGG---GTTCSEEE
T ss_pred CCeEEEEC-CCChHHHHHHHHHHhC--CCeEEEEECChHHHHHHH-hCCCceEEEcccH-HH---HHHH---HcCCCEEE
Confidence 66888777 5678888888776431 579999998876643211 1257 88899987 21 2122 13799999
Q ss_pred eCCC
Q 038391 119 SDMC 122 (186)
Q Consensus 119 ~d~~ 122 (186)
....
T Consensus 90 ~~ag 93 (236)
T 3e8x_A 90 FAAG 93 (236)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 8764
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=84.69 E-value=4.5 Score=30.28 Aligned_cols=70 Identities=17% Similarity=0.191 Sum_probs=47.7
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCC
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~ 121 (186)
+||-.| |+|+++..+++.+-.. +.+|++++-++..+... ...+++++.+|+.+.... .+ ..+|.|+...
T Consensus 2 kilVtG-atG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~-~~~~~~~~~~D~~d~~~~---~~----~~~d~vi~~a 70 (224)
T 3h2s_A 2 KIAVLG-ATGRAGSAIVAEARRR--GHEVLAVVRDPQKAADR-LGATVATLVKEPLVLTEA---DL----DSVDAVVDAL 70 (224)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHH-TCTTSEEEECCGGGCCHH---HH----TTCSEEEECC
T ss_pred EEEEEc-CCCHHHHHHHHHHHHC--CCEEEEEEecccccccc-cCCCceEEecccccccHh---hc----ccCCEEEECC
Confidence 456556 5688888888776431 57999999876553321 224688999999887642 22 4689999866
Q ss_pred C
Q 038391 122 C 122 (186)
Q Consensus 122 ~ 122 (186)
.
T Consensus 71 g 71 (224)
T 3h2s_A 71 S 71 (224)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=84.64 E-value=0.49 Score=33.85 Aligned_cols=70 Identities=16% Similarity=0.131 Sum_probs=45.4
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEe
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILS 119 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~ 119 (186)
.+|+=+|| |.++..+++.+.. .+.+|+++|.++..+..... ..+.++.+|.++.. .+... .-..+|+|++
T Consensus 8 ~~viIiG~--G~~G~~la~~L~~--~g~~v~vid~~~~~~~~~~~-~g~~~i~gd~~~~~--~l~~a--~i~~ad~vi~ 77 (140)
T 3fwz_A 8 NHALLVGY--GRVGSLLGEKLLA--SDIPLVVIETSRTRVDELRE-RGVRAVLGNAANEE--IMQLA--HLECAKWLIL 77 (140)
T ss_dssp SCEEEECC--SHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHH-TTCEEEESCTTSHH--HHHHT--TGGGCSEEEE
T ss_pred CCEEEECc--CHHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHH-cCCCEEECCCCCHH--HHHhc--CcccCCEEEE
Confidence 46777777 6677777766543 15799999999987654222 35677888876543 23222 1257899887
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=84.53 E-value=10 Score=29.87 Aligned_cols=81 Identities=14% Similarity=0.173 Sum_probs=50.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------------CCCCCeEEEEeeecCCCh--hhH
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------------HCDARVQTVSADVINLPS--NQV 104 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------------~~~~~~~~~~~d~~~~~~--~~l 104 (186)
.++.+|--|++ |+++..+++.+-. .+.+|+.++.++...... ....++.+++.|+++... ..+
T Consensus 5 ~~k~~lVTGas-~GIG~aia~~la~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 81 (274)
T 3e03_A 5 SGKTLFITGAS-RGIGLAIALRAAR--DGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAV 81 (274)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHH--TTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHH
T ss_pred CCcEEEEECCC-ChHHHHHHHHHHH--CCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHH
Confidence 36677777766 5677777766543 167999999887653321 113467888999887531 111
Q ss_pred hhhCCCCCCccEEEeCCC
Q 038391 105 RALSPKQKGFSVILSDMC 122 (186)
Q Consensus 105 ~~~~~~~~~~D~V~~d~~ 122 (186)
......-+.+|+++.+..
T Consensus 82 ~~~~~~~g~iD~lvnnAG 99 (274)
T 3e03_A 82 AATVDTFGGIDILVNNAS 99 (274)
T ss_dssp HHHHHHHSCCCEEEECCC
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 111111247999999864
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=84.43 E-value=1.7 Score=34.47 Aligned_cols=81 Identities=14% Similarity=0.070 Sum_probs=49.8
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCC-Ch-hhH-hhhCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINL-PS-NQV-RALSP 109 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~-~~-~~l-~~~~~ 109 (186)
.+++||--|++ |+++..+++.+-. .+.+|+.++.++..... .....++.++..|+++. .. ..+ ..+..
T Consensus 11 ~~k~vlITGas-~GIG~~~a~~L~~--~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~ 87 (311)
T 3o26_A 11 KRRCAVVTGGN-KGIGFEICKQLSS--NGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKT 87 (311)
T ss_dssp -CCEEEESSCS-SHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEecCC-chHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHH
Confidence 35667766654 6688887777643 16799999988765322 12234688999999886 31 111 11111
Q ss_pred CCCCccEEEeCCC
Q 038391 110 KQKGFSVILSDMC 122 (186)
Q Consensus 110 ~~~~~D~V~~d~~ 122 (186)
..+.+|+++.++.
T Consensus 88 ~~g~iD~lv~nAg 100 (311)
T 3o26_A 88 HFGKLDILVNNAG 100 (311)
T ss_dssp HHSSCCEEEECCC
T ss_pred hCCCCCEEEECCc
Confidence 1247999999875
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.39 E-value=0.82 Score=37.77 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=40.6
Q ss_pred cCCCCCCCEEEEEccc-C-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCC-hhhHhhhCCC
Q 038391 34 YKLIKPGSSVLDLGCA-P-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLP-SNQVRALSPK 110 (186)
Q Consensus 34 ~~~~~~~~~vLDlGcG-~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~-~~~l~~~~~~ 110 (186)
...+++|++||-.|++ . |.....+++..+ +.+|++++ ++...+....... .++ | .+.. ...+.++.
T Consensus 137 ~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g----~~~V~~~~-~~~~~~~~~~ga~-~~~--~-~~~~~~~~~~~~~-- 205 (349)
T 4a27_A 137 VANLREGMSVLVHSAGGGVGQAVAQLCSTVP----NVTVFGTA-STFKHEAIKDSVT-HLF--D-RNADYVQEVKRIS-- 205 (349)
T ss_dssp TSCCCTTCEEEESSTTSHHHHHHHHHHTTST----TCEEEEEE-CGGGHHHHGGGSS-EEE--E-TTSCHHHHHHHHC--
T ss_pred hcCCCCCCEEEEEcCCcHHHHHHHHHHHHcC----CcEEEEeC-CHHHHHHHHcCCc-EEE--c-CCccHHHHHHHhc--
Confidence 3457899999999984 2 444444554432 46899998 4444322221111 111 2 2222 23344443
Q ss_pred CCCccEEEe
Q 038391 111 QKGFSVILS 119 (186)
Q Consensus 111 ~~~~D~V~~ 119 (186)
++.+|+|+-
T Consensus 206 ~~g~Dvv~d 214 (349)
T 4a27_A 206 AEGVDIVLD 214 (349)
T ss_dssp TTCEEEEEE
T ss_pred CCCceEEEE
Confidence 468999986
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=83.58 E-value=6.8 Score=30.58 Aligned_cols=71 Identities=20% Similarity=0.206 Sum_probs=49.5
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeC
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d 120 (186)
++||-.| |+|+++..+++.+... +.+|+++|.++.... ..++.++.+|+++.. .+..+. ..+|+|+.+
T Consensus 4 k~vlVTG-asg~IG~~la~~L~~~--G~~V~~~~r~~~~~~----~~~~~~~~~Dl~d~~--~~~~~~---~~~D~vi~~ 71 (267)
T 3rft_A 4 KRLLVTG-AAGQLGRVMRERLAPM--AEILRLADLSPLDPA----GPNEECVQCDLADAN--AVNAMV---AGCDGIVHL 71 (267)
T ss_dssp EEEEEES-TTSHHHHHHHHHTGGG--EEEEEEEESSCCCCC----CTTEEEEECCTTCHH--HHHHHH---TTCSEEEEC
T ss_pred CEEEEEC-CCCHHHHHHHHHHHhc--CCEEEEEecCCcccc----CCCCEEEEcCCCCHH--HHHHHH---cCCCEEEEC
Confidence 3555555 4688999999887542 568999999876644 356889999987643 344443 378999987
Q ss_pred CCC
Q 038391 121 MCP 123 (186)
Q Consensus 121 ~~~ 123 (186)
+..
T Consensus 72 Ag~ 74 (267)
T 3rft_A 72 GGI 74 (267)
T ss_dssp CSC
T ss_pred CCC
Confidence 643
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=83.37 E-value=1 Score=42.03 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=43.4
Q ss_pred CCCCCCEEEEEcc-c-CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh-hhHhhhCCCCC
Q 038391 36 LIKPGSSVLDLGC-A-PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQK 112 (186)
Q Consensus 36 ~~~~~~~vLDlGc-G-~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~-~~l~~~~~~~~ 112 (186)
.+++|++||=.|+ | .|.....+++.+ |.+|++++-++ .......... .++ |..+..+ ..+.+.+ .+.
T Consensus 342 ~l~~G~~VLI~gaaGgvG~~aiqlAk~~-----Ga~V~~t~~~~-k~~~l~lga~-~v~--~~~~~~~~~~i~~~t-~g~ 411 (795)
T 3slk_A 342 GLRPGESLLVHSAAGGVGMAAIQLARHL-----GAEVYATASED-KWQAVELSRE-HLA--SSRTCDFEQQFLGAT-GGR 411 (795)
T ss_dssp CCCTTCCEEEESTTBHHHHHHHHHHHHT-----TCCEEEECCGG-GGGGSCSCGG-GEE--CSSSSTHHHHHHHHS-CSS
T ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHc-----CCEEEEEeChH-HhhhhhcChh-hee--ecCChhHHHHHHHHc-CCC
Confidence 3688999999985 3 477788888876 57899998655 3221111111 111 2222221 2334444 356
Q ss_pred CccEEEe
Q 038391 113 GFSVILS 119 (186)
Q Consensus 113 ~~D~V~~ 119 (186)
.+|+|+-
T Consensus 412 GvDvVld 418 (795)
T 3slk_A 412 GVDVVLN 418 (795)
T ss_dssp CCSEEEE
T ss_pred CeEEEEE
Confidence 8999997
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=83.37 E-value=0.47 Score=38.74 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=27.5
Q ss_pred CCCCCCCEEEEEc-ccC-ChHHHHHHHHhCCCCCCCeEEEEeC
Q 038391 35 KLIKPGSSVLDLG-CAP-GAWLQVACQSLGPLDNGGSVVGIDV 75 (186)
Q Consensus 35 ~~~~~~~~vLDlG-cG~-G~~~~~l~~~~~~~~~~~~v~gvDi 75 (186)
..+++|++||-+| +|+ |..+..+++.. +.+|++++-
T Consensus 148 ~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~-----Ga~vi~~~~ 185 (321)
T 3tqh_A 148 AEVKQGDVVLIHAGAGGVGHLAIQLAKQK-----GTTVITTAS 185 (321)
T ss_dssp TTCCTTCEEEESSTTSHHHHHHHHHHHHT-----TCEEEEEEC
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHc-----CCEEEEEec
Confidence 4478999999996 664 77777777775 468999873
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=83.17 E-value=0.34 Score=39.27 Aligned_cols=82 Identities=13% Similarity=0.037 Sum_probs=48.7
Q ss_pred CCCEEEEEcccCC-hHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCCCCeEEEEeeecCCCh--hhHhhhCCCC
Q 038391 39 PGSSVLDLGCAPG-AWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCDARVQTVSADVINLPS--NQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~G-~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~ 111 (186)
.++++|--|++.| +++..+++.+-. .+.+|+.++.++...+. .....++.+++.|+++... ..+......-
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 107 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAARE--AGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKW 107 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHH--TTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHH--CCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhc
Confidence 4678888888754 467666666533 16789999887532111 1111357788899887531 1111111112
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
+.+|+++.++.
T Consensus 108 g~iD~lVnnAG 118 (293)
T 3grk_A 108 GKLDFLVHAIG 118 (293)
T ss_dssp SCCSEEEECCC
T ss_pred CCCCEEEECCc
Confidence 47999999864
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=82.75 E-value=5.2 Score=31.37 Aligned_cols=80 Identities=8% Similarity=-0.017 Sum_probs=49.0
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC---CCC-----cCCCCCeEEEEeeecCCCh-h-hHhhhCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK---VPS-----LHCDARVQTVSADVINLPS-N-QVRALSP 109 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~---i~~-----~~~~~~~~~~~~d~~~~~~-~-~l~~~~~ 109 (186)
++++|--|++ |+++..+++.+-.. +.+|+.++.+... +.. .....++.+++.|+++... . .+.....
T Consensus 11 ~k~vlVTGas-~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 87 (262)
T 3ksu_A 11 NKVIVIAGGI-KNLGALTAKTFALE--SVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEK 87 (262)
T ss_dssp TCEEEEETCS-SHHHHHHHHHHTTS--SCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHH
T ss_pred CCEEEEECCC-chHHHHHHHHHHHC--CCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 5677776755 66888888887652 6799998765432 111 1223568888999887531 1 1111111
Q ss_pred CCCCccEEEeCCC
Q 038391 110 KQKGFSVILSDMC 122 (186)
Q Consensus 110 ~~~~~D~V~~d~~ 122 (186)
.-+.+|+++.+..
T Consensus 88 ~~g~iD~lvnnAg 100 (262)
T 3ksu_A 88 EFGKVDIAINTVG 100 (262)
T ss_dssp HHCSEEEEEECCC
T ss_pred HcCCCCEEEECCC
Confidence 1147999999865
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=82.71 E-value=3.3 Score=31.95 Aligned_cols=75 Identities=20% Similarity=0.088 Sum_probs=46.6
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCC------CC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSP------KQ 111 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~------~~ 111 (186)
..++++|-.|+ +|+++..+++.+-.. +.+|+.++.++..... ...++..|+++.. .+..+.. ..
T Consensus 5 ~~~k~vlVTGa-s~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~-----~~~~~~~D~~~~~--~v~~~~~~~~~~~~~ 74 (241)
T 1dhr_A 5 GEARRVLVYGG-RGALGSRCVQAFRAR--NWWVASIDVVENEEAS-----ASVIVKMTDSFTE--QADQVTAEVGKLLGD 74 (241)
T ss_dssp -CCCEEEEETT-TSHHHHHHHHHHHTT--TCEEEEEESSCCTTSS-----EEEECCCCSCHHH--HHHHHHHHHHHHHTT
T ss_pred CCCCEEEEECC-CcHHHHHHHHHHHhC--CCEEEEEeCChhhccC-----CcEEEEcCCCCHH--HHHHHHHHHHHHhCC
Confidence 35667887774 566888888776542 6799999988765432 3455567776532 1211110 01
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
+.+|+++.+..
T Consensus 75 g~iD~lv~~Ag 85 (241)
T 1dhr_A 75 QKVDAILCVAG 85 (241)
T ss_dssp CCEEEEEECCC
T ss_pred CCCCEEEEccc
Confidence 47999999864
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=82.61 E-value=1.1 Score=35.18 Aligned_cols=82 Identities=15% Similarity=0.041 Sum_probs=49.1
Q ss_pred CCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCC---CCC-cCCCCCeEEEEeeecCCCh--hhHhhhCCCC
Q 038391 39 PGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVK---VPS-LHCDARVQTVSADVINLPS--NQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~---i~~-~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~ 111 (186)
.++++|-.|++. |+++..+++.+-.. +.+|+.++.++.. +.. .....+..+++.|+++... ..+......-
T Consensus 8 ~~k~vlVTGas~~~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T 1qsg_A 8 SGKRILVTGVASKLSIAYGIAQAMHRE--GAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVW 85 (265)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHT--TCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHC--CCEEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHc
Confidence 356788888763 77888888776431 6799999987721 110 0111234678888876431 1222222223
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
+.+|+++.+..
T Consensus 86 g~iD~lv~~Ag 96 (265)
T 1qsg_A 86 PKFDGFVHSIG 96 (265)
T ss_dssp SSEEEEEECCC
T ss_pred CCCCEEEECCC
Confidence 57999999764
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=82.11 E-value=13 Score=28.54 Aligned_cols=75 Identities=15% Similarity=0.149 Sum_probs=47.8
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh-hhHhhhCCCCCCccEEE
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVIL 118 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~-~~l~~~~~~~~~~D~V~ 118 (186)
++++|--|++ |+++..+++.+-.. .+.+|+.+|.++..- ..++.+++.|+++... ..+..... .+.+|+++
T Consensus 4 ~k~vlITGas-~gIG~~~a~~l~~~-~g~~v~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~-~~~id~lv 75 (244)
T 4e4y_A 4 MANYLVTGGS-KGIGKAVVELLLQN-KNHTVINIDIQQSFS-----AENLKFIKADLTKQQDITNVLDIIK-NVSFDGIF 75 (244)
T ss_dssp CEEEEEETTT-SHHHHHHHHHHTTS-TTEEEEEEESSCCCC-----CTTEEEEECCTTCHHHHHHHHHHTT-TCCEEEEE
T ss_pred CCeEEEeCCC-ChHHHHHHHHHHhc-CCcEEEEeccccccc-----cccceEEecCcCCHHHHHHHHHHHH-hCCCCEEE
Confidence 4566766654 66888888777431 256899999877631 1347888899886531 22222222 45899999
Q ss_pred eCCC
Q 038391 119 SDMC 122 (186)
Q Consensus 119 ~d~~ 122 (186)
.+..
T Consensus 76 ~nAg 79 (244)
T 4e4y_A 76 LNAG 79 (244)
T ss_dssp ECCC
T ss_pred ECCc
Confidence 9875
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=81.94 E-value=4.3 Score=31.56 Aligned_cols=73 Identities=11% Similarity=0.145 Sum_probs=44.1
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh--hhHhhhCCCCCCccEE
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS--NQVRALSPKQKGFSVI 117 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~~D~V 117 (186)
+++||-.|++ |+++..+++.+-. .+.+|++++.++..... ..+..|+++... ..+.......+.+|++
T Consensus 22 ~k~vlITGas-~gIG~~la~~l~~--~G~~V~~~~r~~~~~~~-------~~~~~d~~d~~~v~~~~~~~~~~~g~iD~l 91 (251)
T 3orf_A 22 SKNILVLGGS-GALGAEVVKFFKS--KSWNTISIDFRENPNAD-------HSFTIKDSGEEEIKSVIEKINSKSIKVDTF 91 (251)
T ss_dssp CCEEEEETTT-SHHHHHHHHHHHH--TTCEEEEEESSCCTTSS-------EEEECSCSSHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCEEEEECCC-CHHHHHHHHHHHH--CCCEEEEEeCCcccccc-------cceEEEeCCHHHHHHHHHHHHHHcCCCCEE
Confidence 4577777765 5677777776643 16799999998876543 234455444321 1222222223589999
Q ss_pred EeCCC
Q 038391 118 LSDMC 122 (186)
Q Consensus 118 ~~d~~ 122 (186)
+.++.
T Consensus 92 i~~Ag 96 (251)
T 3orf_A 92 VCAAG 96 (251)
T ss_dssp EECCC
T ss_pred EECCc
Confidence 98764
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=81.93 E-value=5.4 Score=29.49 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=41.2
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCC
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~ 121 (186)
+||-.|+ +|+++..+++.+- . +.+|++++-++. ++..|+.+.. .+..+...-+++|.|+.+.
T Consensus 5 ~vlVtGa-sg~iG~~~~~~l~-~--g~~V~~~~r~~~------------~~~~D~~~~~--~~~~~~~~~~~~d~vi~~a 66 (202)
T 3d7l_A 5 KILLIGA-SGTLGSAVKERLE-K--KAEVITAGRHSG------------DVTVDITNID--SIKKMYEQVGKVDAIVSAT 66 (202)
T ss_dssp EEEEETT-TSHHHHHHHHHHT-T--TSEEEEEESSSS------------SEECCTTCHH--HHHHHHHHHCCEEEEEECC
T ss_pred EEEEEcC-CcHHHHHHHHHHH-C--CCeEEEEecCcc------------ceeeecCCHH--HHHHHHHHhCCCCEEEECC
Confidence 6777774 6889999998876 3 689999987764 3456776532 2222211013689999876
Q ss_pred C
Q 038391 122 C 122 (186)
Q Consensus 122 ~ 122 (186)
.
T Consensus 67 g 67 (202)
T 3d7l_A 67 G 67 (202)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=80.98 E-value=0.33 Score=41.81 Aligned_cols=37 Identities=5% Similarity=-0.120 Sum_probs=27.5
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCe----EEEEeCCCCCC
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGS----VVGIDVKKVKV 80 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~----v~gvDis~~~i 80 (186)
-+|+|++||.|+....+-+.-.+ -.- |.++|+++.++
T Consensus 11 lrvldLFsGiGG~~~Gl~~aG~~---~~~~~~~v~avEid~~A~ 51 (403)
T 4dkj_A 11 IKVFEAFAGIGSQFKALKNIARS---KNWEIQHSGMVEWFVDAI 51 (403)
T ss_dssp EEEEEETCTTCHHHHHHHHHHHH---HTEEEEEEEEECCBHHHH
T ss_pred ceEEEEecCcCHHHHHHHHhCCc---cccceeeEEEEecCHHHH
Confidence 38999999999999988775100 012 78899999764
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=80.91 E-value=0.97 Score=35.83 Aligned_cols=81 Identities=14% Similarity=0.131 Sum_probs=48.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC------------C-----cCCCCCeEEEEeeecCCCh
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP------------S-----LHCDARVQTVSADVINLPS 101 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~------------~-----~~~~~~~~~~~~d~~~~~~ 101 (186)
.++++|--|++ |+++..+++.+-. .+.+|+.+|.+...-. . .....++.+++.|+++...
T Consensus 9 ~gk~vlVTGas-~gIG~~ia~~l~~--~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 85 (287)
T 3pxx_A 9 QDKVVLVTGGA-RGQGRSHAVKLAE--EGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAA 85 (287)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHH--TTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHH
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHH--CCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHH
Confidence 35677777765 5677777766543 1679999998743211 0 1123568888999887531
Q ss_pred --hhHhhhCCCCCCccEEEeCCC
Q 038391 102 --NQVRALSPKQKGFSVILSDMC 122 (186)
Q Consensus 102 --~~l~~~~~~~~~~D~V~~d~~ 122 (186)
..+......-+.+|+++.+..
T Consensus 86 v~~~~~~~~~~~g~id~lv~nAg 108 (287)
T 3pxx_A 86 VSRELANAVAEFGKLDVVVANAG 108 (287)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 111111111247999999865
|
| >3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A* | Back alignment and structure |
|---|
Probab=80.53 E-value=4 Score=33.77 Aligned_cols=55 Identities=20% Similarity=0.144 Sum_probs=40.2
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEe
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSA 94 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~ 94 (186)
.+..|+-+|||+|.....+++.++..+...+.+.+|..+..... ....++++++.
T Consensus 60 ~~~~VVYVGSApG~HL~~L~~~fp~~f~~ikWvLiDPap~~~~l-~~~~NV~li~~ 114 (307)
T 3mag_A 60 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPIL-NGLRDVTLVTR 114 (307)
T ss_dssp TTCEEEEESCCSCHHHHHHHHHHHHTTCCCEEEEEESSCCCGGG-TTCTTEEEEEC
T ss_pred CCcEEEEecccCccHHHHHHHhchhhCCCeEEEEEcCCcchhhh-cCCCcEEEEec
Confidence 46799999999999999999987642234699999997765221 12256777765
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=80.20 E-value=0.62 Score=33.01 Aligned_cols=71 Identities=24% Similarity=0.230 Sum_probs=46.6
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEe
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILS 119 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~ 119 (186)
..+|+-+|| |.++..+++.+.. .+.+|+++|.++..+..... ....++.+|.++.. .+... .-..+|.|+.
T Consensus 6 ~~~v~I~G~--G~iG~~la~~L~~--~g~~V~~id~~~~~~~~~~~-~~~~~~~gd~~~~~--~l~~~--~~~~~d~vi~ 76 (141)
T 3llv_A 6 RYEYIVIGS--EAAGVGLVRELTA--AGKKVLAVDKSKEKIELLED-EGFDAVIADPTDES--FYRSL--DLEGVSAVLI 76 (141)
T ss_dssp CCSEEEECC--SHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHH-TTCEEEECCTTCHH--HHHHS--CCTTCSEEEE
T ss_pred CCEEEEECC--CHHHHHHHHHHHH--CCCeEEEEECCHHHHHHHHH-CCCcEEECCCCCHH--HHHhC--CcccCCEEEE
Confidence 357888887 6688888777643 15689999999877543221 24677888876542 33333 1357899887
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 186 | ||||
| d2p41a1 | 257 | c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)- | 3e-24 | |
| d1ej0a_ | 180 | c.66.1.2 (A:) RNA methyltransferase FtsJ {Escheric | 6e-20 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 8e-05 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 2e-04 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 3e-04 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 5e-04 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 5e-04 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 6e-04 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 0.001 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 0.001 | |
| d1im8a_ | 225 | c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) | 0.002 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 0.002 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 0.003 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 0.003 |
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Score = 93.4 bits (232), Expect = 3e-24
Identities = 34/176 (19%), Positives = 60/176 (34%), Gaps = 34/176 (19%)
Query: 6 APDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLD 65
A + R V+R + KL ++ L+ P V+DLGC G W +
Sbjct: 34 AKEGIKRGETDHHAVSRGSAKLRWFVERN-LVTPEGKVVDLGCGRGGWSYYCGGLKNVRE 92
Query: 66 NGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPS 124
G G + +P + T +++ L S V + P++ +L D+ S
Sbjct: 93 VKGLTKGGPGHEEPIP-------MSTYGWNLVRLQSGVDVFFIPPER--CDTLLCDIGES 143
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
S T +A + +R ++L L +K+L
Sbjct: 144 -SPNPTVEAGRT----LRVLNLVE------------------NWLSNNTQFCVKVL 176
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Score = 80.3 bits (197), Expect = 6e-20
Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 26/167 (15%)
Query: 18 GYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKK 77
G +R+ FKL +IQ+ KL KPG +V+DLG APG W Q +G + + +
Sbjct: 1 GLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP 60
Query: 78 VKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSV 137
+ D + + V++SDM P++SG D ++
Sbjct: 61 IVGVDFLQ--------GDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAM 112
Query: 138 ELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
L A+++ VL PGG V+K+ + +
Sbjct: 113 YLVELALEMCR------------------DVLAPGGSFVVKVFQGEG 141
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 39.6 bits (91), Expect = 8e-05
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 10/50 (20%)
Query: 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDV 75
KL+QI +K VLD+ G VV D+
Sbjct: 6 KLMQIAA----LKGNEEVLDVATGGGHVANAF------APFVKKVVAFDL 45
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 38.4 bits (88), Expect = 2e-04
Identities = 7/39 (17%), Positives = 11/39 (28%), Gaps = 6/39 (15%)
Query: 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDV 75
+ VLD+G G +G+D
Sbjct: 14 CRAEHRVLDIGAGAGHTALAF------SPYVQECIGVDA 46
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 38.0 bits (87), Expect = 3e-04
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 12/73 (16%)
Query: 35 KLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVK-------KVKVPSLHCDA 87
K G SVLDLGC G L ++ G G+D+ +V+ ++
Sbjct: 20 LYTKRGDSVLDLGCGKGGDLLKYERA-----GIGEYYGVDIAEVSINDARVRARNMKRRF 74
Query: 88 RVQTVSADVINLP 100
+V + D
Sbjct: 75 KVFFRAQDSYGRH 87
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 37.3 bits (85), Expect = 5e-04
Identities = 28/172 (16%), Positives = 46/172 (26%), Gaps = 38/172 (22%)
Query: 7 PDFF-YREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLD 65
P F E++ + + K + + ++ KPG+ +LDLG G L +
Sbjct: 1 PRIFTISESEHRIHNPFTEEKYATLGRVLRM-KPGTRILDLGSGSGEMLCTWAR------ 53
Query: 66 NGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSV 125
+ + + RA + +
Sbjct: 54 ------------------DHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY 95
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177
D A V A A LA LKPGG ++I
Sbjct: 96 VANEKCDVAACVGATWIAGGFAGAEELLAQ------------SLKPGGIMLI 135
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 37.3 bits (86), Expect = 5e-04
Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDV 75
++PG +L++G G +L G++ ++
Sbjct: 83 LRPGMDILEVGVGSGNMSSYILYALNG---KGTLTVVER 118
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 37.2 bits (85), Expect = 6e-04
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 14/67 (20%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y + + ++ + +K I ++D GC G V L G
Sbjct: 7 DLYYND-DYVSFLVNTVWK----------ITKPVHIVDYGCGYGYLGLVLMPLLPE---G 52
Query: 68 GSVVGID 74
GID
Sbjct: 53 SKYTGID 59
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (83), Expect = 0.001
Identities = 15/141 (10%), Positives = 34/141 (24%), Gaps = 25/141 (17%)
Query: 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADV 96
+ +DLG G + + N G++ + R
Sbjct: 149 MTDDDLFVDLGSGVGQVVLQVAAAT----NCKHHYGVEKADIPAKYAETMDREFRKWM-- 202
Query: 97 INLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASP 156
+ K +++ D + ++ A
Sbjct: 203 --------KWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNF----------AFGPE 244
Query: 157 VNNSDSSTDSGVLKPGGHLVI 177
V++ + +K GG +V
Sbjct: 245 VDHQLKERFA-NMKEGGRIVS 264
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.1 bits (82), Expect = 0.001
Identities = 18/154 (11%), Positives = 42/154 (27%), Gaps = 24/154 (15%)
Query: 26 KLLQIQKQYKLIKPGSSVLDLGCAPG--AWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL 83
KL I + K +L +G G ++ + ++ PS
Sbjct: 27 KLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVE------PSA 80
Query: 84 HCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRA 143
A+ + + A + NL + + + + + D +++
Sbjct: 81 EQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL----QKWDFIHMIQMLYYV 136
Query: 144 VDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177
D+ S +L ++I
Sbjct: 137 KDIPATLKFFHS------------LLGTNAKMLI 158
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Score = 35.5 bits (80), Expect = 0.002
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 13/65 (20%)
Query: 10 FYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGS 69
Y + + +++ + S+V DLGC+ GA A +++
Sbjct: 21 GYSNIITA---------IGMLAERF--VTADSNVYDLGCSRGAATLSARRNINQ--PNVK 67
Query: 70 VVGID 74
++GID
Sbjct: 68 IIGID 72
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 35.3 bits (80), Expect = 0.002
Identities = 6/45 (13%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Query: 30 IQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGID 74
++ +PG+ +L+LG G + ++ + ++
Sbjct: 12 VRAFTPFFRPGN-LLELGSFKGDFTSRL------QEHFNDITCVE 49
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.2 bits (80), Expect = 0.003
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDV 75
I PG +VL+ G G +++G G V+ +V
Sbjct: 96 INPGDTVLEAGSGSGGMSLFLSKAVGS---QGRVISFEV 131
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 34.7 bits (78), Expect = 0.003
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQ 59
D YR R+ V + +I K+ + VLDL C G +
Sbjct: 13 DTIYRR--RIERVKAEIDFVEEIFKEDAK-REVRRVLDLACGTGIPTLELAE 61
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 186 | |||
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 99.91 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.67 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.67 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.66 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.66 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.64 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.64 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.61 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 99.61 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.59 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.59 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.57 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.56 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.56 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.55 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.55 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.54 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.52 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.5 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.5 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.5 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.5 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.49 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.47 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.46 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.45 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.44 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.44 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.44 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.43 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.42 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.42 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.41 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.4 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.38 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.38 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.38 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.36 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.33 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.33 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.32 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.31 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.31 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.29 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.29 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.29 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.26 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 99.25 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.25 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 99.24 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.24 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.23 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.21 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.21 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.2 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.18 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.16 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.12 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.12 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 99.12 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.08 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.07 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.04 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.03 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 99.03 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.03 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.02 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 99.01 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.99 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.98 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.92 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.89 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.88 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.83 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.8 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.78 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.7 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.69 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.66 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.65 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.64 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.55 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.55 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.51 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.5 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.49 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.42 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.39 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.37 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.35 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.26 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.24 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.23 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.22 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.19 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.07 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.0 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.94 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.69 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.61 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 97.53 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.47 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.41 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.39 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.34 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 97.16 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.16 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.15 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 97.13 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.1 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.94 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.92 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.75 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.73 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 96.72 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.6 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.26 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.24 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 96.04 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.03 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.01 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 95.69 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 95.66 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 95.37 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 95.33 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 95.13 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 94.27 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 94.11 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 93.85 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 93.64 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 93.63 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 93.49 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 93.29 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 92.79 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 92.49 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 92.19 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 91.17 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 90.13 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 89.81 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 89.5 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 89.08 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 88.79 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 87.95 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 87.2 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 86.79 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 86.61 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 85.33 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 84.89 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 84.81 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 84.47 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 83.67 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 82.57 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 82.27 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 82.17 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 82.08 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 81.81 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 81.05 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 80.8 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 80.71 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 80.59 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 80.51 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 80.51 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 80.24 |
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=2.2e-24 Score=167.56 Aligned_cols=141 Identities=30% Similarity=0.487 Sum_probs=122.3
Q ss_pred chhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeec
Q 038391 18 GYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVI 97 (186)
Q Consensus 18 ~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~ 97 (186)
+||+|+++||.|+...+..++++.+||||||+||+|+.++.+..+. .+.|+++|+.+.. ...++.++++|+.
T Consensus 1 GyrsRaafKL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~---~~~v~~vDl~~~~-----~i~~~~~~~~d~~ 72 (180)
T d1ej0a_ 1 GLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGG---KGRIIACDLLPMD-----PIVGVDFLQGDFR 72 (180)
T ss_dssp CCSCHHHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCT---TCEEEEEESSCCC-----CCTTEEEEESCTT
T ss_pred CchhHHHHHHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccc---cceEEEeeccccc-----ccCCceEeecccc
Confidence 6999999999999999999999999999999999999999998875 6899999998843 2346889999987
Q ss_pred CCChh-hHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEE
Q 038391 98 NLPSN-QVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV 176 (186)
Q Consensus 98 ~~~~~-~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lv 176 (186)
+.... .+.... ..+++|+|++||+|+.+|....++..+.++....+..+.+ +||+||.||
T Consensus 73 ~~~~~~~~~~~~-~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~------------------~Lk~gG~fV 133 (180)
T d1ej0a_ 73 DELVMKALLERV-GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRD------------------VLAPGGSFV 133 (180)
T ss_dssp SHHHHHHHHHHH-TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHH------------------HEEEEEEEE
T ss_pred cchhhhhhhhhc-cCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhh------------------ccCCCCcEE
Confidence 65421 121221 3578999999999999999999999999999999999999 999999999
Q ss_pred EEEccCCCC
Q 038391 177 IKLLESQDA 185 (186)
Q Consensus 177 i~~~~~~~~ 185 (186)
+|+|.|++.
T Consensus 134 ~K~F~g~~~ 142 (180)
T d1ej0a_ 134 VKVFQGEGF 142 (180)
T ss_dssp EEEESSTTH
T ss_pred EEEecCccH
Confidence 999999763
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.67 E-value=2.5e-17 Score=130.42 Aligned_cols=111 Identities=19% Similarity=0.187 Sum_probs=85.9
Q ss_pred HHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChh
Q 038391 29 QIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSN 102 (186)
Q Consensus 29 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~ 102 (186)
+++.....+++|.+|||+|||+|.++..+++. +.+|+|||+|+.|++.+ ....++.++++|+.+.+.
T Consensus 6 ~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~------~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~- 78 (234)
T d1xxla_ 6 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPY------VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF- 78 (234)
T ss_dssp HHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG------SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCS-
T ss_pred HHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHh------CCeEEEEeCChhhhhhhhhhhcccccccccccccccccccc-
Confidence 34444555899999999999999999999987 47999999999997542 223579999999887653
Q ss_pred hHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 103 QVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 103 ~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
++++||+|+|... ..|..+ ...++.++.+ +|||||++++..+..
T Consensus 79 -------~~~~fD~v~~~~~----l~~~~d-------~~~~l~~~~r------------------~LkpgG~~~~~~~~~ 122 (234)
T d1xxla_ 79 -------PDDSFDIITCRYA----AHHFSD-------VRKAVREVAR------------------VLKQDGRFLLVDHYA 122 (234)
T ss_dssp -------CTTCEEEEEEESC----GGGCSC-------HHHHHHHHHH------------------HEEEEEEEEEEEECB
T ss_pred -------cccccceeeeece----eecccC-------HHHHHHHHHH------------------eeCCCcEEEEEEcCC
Confidence 3679999999542 223333 4578888888 999999999976543
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.67 E-value=4.2e-17 Score=127.98 Aligned_cols=103 Identities=20% Similarity=0.250 Sum_probs=81.5
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
++++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.+ ....+++++++|+.+++. +
T Consensus 13 l~~~~rVLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~--------~ 78 (231)
T d1vl5a_ 13 LKGNEEVLDVATGGGHVANAFAPF------VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPF--------T 78 (231)
T ss_dssp CCSCCEEEEETCTTCHHHHHHGGG------SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCS--------C
T ss_pred CCCcCEEEEecccCcHHHHHHHHh------CCEEEEEECCHHHHhhhhhcccccccccccccccccccccc--------c
Confidence 789999999999999999999987 47999999999997652 234689999999887753 3
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
+++||+|+|... ..|..+ ...++.++.+ +|||||+|+|..+..
T Consensus 79 ~~~fD~v~~~~~----l~~~~d-------~~~~l~~~~r------------------~LkpgG~l~i~~~~~ 121 (231)
T d1vl5a_ 79 DERFHIVTCRIA----AHHFPN-------PASFVSEAYR------------------VLKKGGQLLLVDNSA 121 (231)
T ss_dssp TTCEEEEEEESC----GGGCSC-------HHHHHHHHHH------------------HEEEEEEEEEEEEEB
T ss_pred cccccccccccc----ccccCC-------HHHHHHHHHH------------------hcCCCcEEEEEeCCC
Confidence 679999999542 233334 5578888888 999999999976543
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.66 E-value=1.1e-16 Score=126.97 Aligned_cols=108 Identities=23% Similarity=0.311 Sum_probs=80.4
Q ss_pred HHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhH
Q 038391 30 IQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQV 104 (186)
Q Consensus 30 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l 104 (186)
+...+. .+++.+|||+|||+|..+..+++. +.+|+|||+|+.|+..+ ....++++.++|+.+++.
T Consensus 33 ~~~~~~-~~~~~~iLDiGcGtG~~~~~l~~~------~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~--- 102 (251)
T d1wzna1 33 IFKEDA-KREVRRVLDLACGTGIPTLELAER------GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAF--- 102 (251)
T ss_dssp HHHHTC-SSCCCEEEEETCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCC---
T ss_pred HHHHhc-CCCCCEEEEeCCCCCccchhhccc------ceEEEEEeeccccccccccccccccccchheehhhhhccc---
Confidence 444433 456789999999999999999997 57999999999998652 223478999999988753
Q ss_pred hhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 105 RALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 105 ~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
.++||+|+|-. ...+..+ .+....++..+.+ +|||||++++.+
T Consensus 103 ------~~~fD~I~~~~----~~~~~~~----~~~~~~~L~~~~~------------------~LkpgG~lii~~ 145 (251)
T d1wzna1 103 ------KNEFDAVTMFF----STIMYFD----EEDLRKLFSKVAE------------------ALKPGGVFITDF 145 (251)
T ss_dssp ------CSCEEEEEECS----SGGGGSC----HHHHHHHHHHHHH------------------HEEEEEEEEEEE
T ss_pred ------ccccchHhhhh----hhhhcCC----hHHHHHHHHHHHH------------------HcCCCcEEEEEe
Confidence 46899999832 1112221 2234578888888 999999999865
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.66 E-value=9.7e-17 Score=130.55 Aligned_cols=115 Identities=17% Similarity=0.240 Sum_probs=89.3
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCC
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINL 99 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~ 99 (186)
+.+.+.....++++.+|||+|||+|.++..+++++ +.+|+|+|+++.+++. .....++++.++|+.++
T Consensus 55 ~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~-----~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l 129 (282)
T d2o57a1 55 LASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-----GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI 129 (282)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccC-----CcEEEEEeccchhhhhhhcccccccccccccccccccccc
Confidence 44555555668899999999999999999999886 4799999999999754 23456899999999877
Q ss_pred ChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 100 PSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 100 ~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
+. +.++||+|++... ..|..+ ...++.++.+ +|||||+|++..
T Consensus 130 ~~--------~~~sfD~V~~~~~----l~h~~d-------~~~~l~~~~~------------------~LkpgG~l~~~~ 172 (282)
T d2o57a1 130 PC--------EDNSYDFIWSQDA----FLHSPD-------KLKVFQECAR------------------VLKPRGVMAITD 172 (282)
T ss_dssp SS--------CTTCEEEEEEESC----GGGCSC-------HHHHHHHHHH------------------HEEEEEEEEEEE
T ss_pred cc--------cccccchhhccch----hhhccC-------HHHHHHHHHH------------------hcCCCcEEEEEE
Confidence 54 3679999998432 233333 4467888888 999999999987
Q ss_pred ccCC
Q 038391 180 LESQ 183 (186)
Q Consensus 180 ~~~~ 183 (186)
+...
T Consensus 173 ~~~~ 176 (282)
T d2o57a1 173 PMKE 176 (282)
T ss_dssp EEEC
T ss_pred eecC
Confidence 6544
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.64 E-value=5.6e-17 Score=127.71 Aligned_cols=102 Identities=25% Similarity=0.244 Sum_probs=76.0
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
++++.+|||+|||+|.++..+++. +.+|+|+|+|+.|+..++......++++|+.+++. +.++||+
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~--------~~~~fD~ 105 (246)
T d2avna1 40 LKNPCRVLDLGGGTGKWSLFLQER------GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPF--------PSGAFEA 105 (246)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTT------TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCS--------CTTCEEE
T ss_pred cCCCCEEEEECCCCchhccccccc------ceEEEEeeccccccccccccccccccccccccccc--------ccccccc
Confidence 467889999999999999999986 57999999999998764333233467788777653 3689999
Q ss_pred EEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 117 V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
|+|... .-.|..+ ...+++++.+ +|||||.+++.+.
T Consensus 106 ii~~~~---~~~~~~d-------~~~~l~~i~r------------------~Lk~gG~~ii~~~ 141 (246)
T d2avna1 106 VLALGD---VLSYVEN-------KDKAFSEIRR------------------VLVPDGLLIATVD 141 (246)
T ss_dssp EEECSS---HHHHCSC-------HHHHHHHHHH------------------HEEEEEEEEEEEE
T ss_pred eeeecc---hhhhhhh-------HHHHHHHHHh------------------hcCcCcEEEEEEC
Confidence 998321 1123333 4457777877 9999999999874
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=2.7e-16 Score=125.31 Aligned_cols=105 Identities=25% Similarity=0.296 Sum_probs=82.3
Q ss_pred HcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHh
Q 038391 33 QYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVR 105 (186)
Q Consensus 33 ~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~ 105 (186)
....++||.+|||+|||+|..+..+++.. +++|+|||+|+.|++. .....+++++++|+.++.
T Consensus 27 ~~~~l~pg~~VLDiGCG~G~~~~~la~~~-----~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~----- 96 (245)
T d1nkva_ 27 RVLRMKPGTRILDLGSGSGEMLCTWARDH-----GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV----- 96 (245)
T ss_dssp HHTCCCTTCEEEEETCTTCHHHHHHHHHT-----CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC-----
T ss_pred HHcCCCCCCEEEEEcCCCCHHHHHHHHhc-----CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcc-----
Confidence 33447899999999999999999999875 4799999999999754 234567999999987753
Q ss_pred hhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 106 ALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 106 ~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
++++||+|++... ..|..+ ...++.++.+ +|||||++++...
T Consensus 97 ----~~~~fD~v~~~~~----~~~~~d-------~~~~l~~~~r------------------~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 97 ----ANEKCDVAACVGA----TWIAGG-------FAGAEELLAQ------------------SLKPGGIMLIGEP 138 (245)
T ss_dssp ----CSSCEEEEEEESC----GGGTSS-------SHHHHHHHTT------------------SEEEEEEEEEEEE
T ss_pred ----ccCceeEEEEEeh----hhccCC-------HHHHHHHHHH------------------HcCcCcEEEEEec
Confidence 3679999998542 222223 4578888898 9999999999754
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.61 E-value=1.9e-16 Score=123.09 Aligned_cols=104 Identities=22% Similarity=0.321 Sum_probs=78.7
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
++++.+|||+|||+|.++..+++. +.+|+|+|+|+.|+..+ .....+.++.+|+.+++. ++
T Consensus 35 l~~~~~ILDiGcG~G~~~~~la~~------~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~--------~~ 100 (226)
T d1ve3a1 35 MKKRGKVLDLACGVGGFSFLLEDY------GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSF--------ED 100 (226)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCS--------CT
T ss_pred cCCCCEEEEECCCcchhhhhHhhh------hcccccccccccchhhhhhhhccccccccccccccccccc--------cC
Confidence 578889999999999999999986 57999999999997552 223467888888887653 36
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
++||+|+|.. ..+... . .....++.++.+ +|||||+|+|.+..
T Consensus 101 ~~fD~I~~~~-----~l~~~~---~-~d~~~~l~~i~~------------------~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 101 KTFDYVIFID-----SIVHFE---P-LELNQVFKEVRR------------------VLKPSGKFIMYFTD 143 (226)
T ss_dssp TCEEEEEEES-----CGGGCC---H-HHHHHHHHHHHH------------------HEEEEEEEEEEEEC
T ss_pred cCceEEEEec-----chhhCC---h-hHHHHHHHHHHH------------------HcCcCcEEEEEEcC
Confidence 7999999943 222221 1 124467888887 99999999988654
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=99.61 E-value=6.6e-16 Score=124.13 Aligned_cols=129 Identities=23% Similarity=0.293 Sum_probs=90.8
Q ss_pred hchhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC----CCCcCCCCC-eEE
Q 038391 17 LGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK----VPSLHCDAR-VQT 91 (186)
Q Consensus 17 ~~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~----i~~~~~~~~-~~~ 91 (186)
.+|++|+++||.++...+ .++++.+|+|||||+|+|+.+++.+.. ...|.|+++--.. +......-+ +++
T Consensus 45 ~~~~SR~~~Kl~~~~~~~-~~~~~~~vvDlG~~pGgws~~~a~~~~----v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~ 119 (257)
T d2p41a1 45 HHAVSRGSAKLRWFVERN-LVTPEGKVVDLGCGRGGWSYYCGGLKN----VREVKGLTKGGPGHEEPIPMSTYGWNLVRL 119 (257)
T ss_dssp SCCSSTHHHHHHHHHHTT-SSCCCEEEEEETCTTSHHHHHHHTSTT----EEEEEEECCCSTTSCCCCCCCSTTGGGEEE
T ss_pred CCCcchHHHHHHHHHHhc-CccCCCeEEEecCCCChHHHHHHhhcC----CCceeEEEecCccccCCccccccccccccc
Confidence 458999999999999997 678888999999999999999998742 3578888873211 111111111 222
Q ss_pred EEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCccccc
Q 038391 92 VSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKP 171 (186)
Q Consensus 92 ~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lkp 171 (186)
...+ . +..+ +++.+|+|+|||.++ ++.+..++..++ .+++.+.+ .|+|
T Consensus 120 ~~~~----d---v~~l--~~~~~D~vlcDm~es-s~~~~vd~~Rtl----~vLela~~------------------wLk~ 167 (257)
T d2p41a1 120 QSGV----D---VFFI--PPERCDTLLCDIGES-SPNPTVEAGRTL----RVLNLVEN------------------WLSN 167 (257)
T ss_dssp ECSC----C---TTTS--CCCCCSEEEECCCCC-CSSHHHHHHHHH----HHHHHHHH------------------HCCT
T ss_pred hhhh----h---HHhc--CCCcCCEEEeeCCCC-CCCchhhhhhHH----HHHHHHHH------------------Hccc
Confidence 2111 1 1111 467899999999886 777777765544 45666666 9999
Q ss_pred CcEEEEEEccC
Q 038391 172 GGHLVIKLLES 182 (186)
Q Consensus 172 gG~lvi~~~~~ 182 (186)
||.||+|+|..
T Consensus 168 gg~FvvKVl~p 178 (257)
T d2p41a1 168 NTQFCVKVLNP 178 (257)
T ss_dssp TCEEEEEESCC
T ss_pred CCEEEEEECCC
Confidence 99999999983
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.59 E-value=3.9e-16 Score=118.52 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=83.7
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC------------------CCCC
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH------------------CDAR 88 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~------------------~~~~ 88 (186)
+.+....+. ++++.+|||+|||+|..+.+++++ |.+|+|+|+|+.|++.++ ....
T Consensus 9 ~~~~~~~l~-~~~~~rvLd~GCG~G~~a~~la~~------G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (201)
T d1pjza_ 9 LQQYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ------GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPG 81 (201)
T ss_dssp HHHHHHHHC-CCTTCEEEETTTCCSHHHHHHHHH------CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSS
T ss_pred HHHHHHHcC-CCCCCEEEEecCcCCHHHHHHHHc------CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccc
Confidence 334444443 688999999999999999999998 689999999999975421 1345
Q ss_pred eEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcc
Q 038391 89 VQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGV 168 (186)
Q Consensus 89 ~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (186)
.+++++|+.++... ....||+|++... .+... .......+..+.+ .
T Consensus 82 ~~~~~~d~~~l~~~-------~~~~~D~i~~~~~-----l~~l~----~~~~~~~~~~i~~------------------~ 127 (201)
T d1pjza_ 82 IEIWCGDFFALTAR-------DIGHCAAFYDRAA-----MIALP----ADMRERYVQHLEA------------------L 127 (201)
T ss_dssp SEEEEECCSSSTHH-------HHHSEEEEEEESC-----GGGSC----HHHHHHHHHHHHH------------------H
T ss_pred cceecccccccccc-------cccceeEEEEEee-----eEecc----hhhhHHHHHHHHH------------------h
Confidence 67889998887654 2468999998432 22221 1224467777777 9
Q ss_pred cccCcEEEEEEccCC
Q 038391 169 LKPGGHLVIKLLESQ 183 (186)
Q Consensus 169 LkpgG~lvi~~~~~~ 183 (186)
|||||.+++..+...
T Consensus 128 LkpgG~l~l~~~~~~ 142 (201)
T d1pjza_ 128 MPQACSGLLITLEYD 142 (201)
T ss_dssp SCSEEEEEEEEESSC
T ss_pred cCCCcEEEEEEcccc
Confidence 999999988776543
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.59 E-value=5.4e-16 Score=123.35 Aligned_cols=104 Identities=16% Similarity=0.187 Sum_probs=78.3
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.+ ....+++++++|+.++.. .+
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~------g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~---------~~ 100 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPK------FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI---------NR 100 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGG------SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCC---------SC
T ss_pred CCCCeEEEEeCcCCHHHHHHHHh------CCccEeeccchhhhhhccccccccCccceeeccchhhhcc---------cc
Confidence 44679999999999999999987 57999999999997652 223478999999987642 46
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+||+|+|-.. ...+.. ..+....++..+.+ +|||||.|++.+.+
T Consensus 101 ~fD~i~~~~~---~~~~~~----~~~~~~~~l~~~~~------------------~LkpgG~~i~~~~~ 144 (246)
T d1y8ca_ 101 KFDLITCCLD---STNYII----DSDDLKKYFKAVSN------------------HLKEGGVFIFDINS 144 (246)
T ss_dssp CEEEEEECTT---GGGGCC----SHHHHHHHHHHHHT------------------TEEEEEEEEEEEEC
T ss_pred cccccceeee---eeeccC----CHHHHHHHHHHHHH------------------hCCCCeEEEEEeCC
Confidence 8999998321 111221 23346678888888 99999999987653
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.57 E-value=1.1e-15 Score=122.37 Aligned_cols=109 Identities=26% Similarity=0.258 Sum_probs=81.6
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
++++.+|||+|||+|..+..+++.- ..+|+|||+|+.|+..+ ....++.+.++|+......
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~~-----~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~------- 89 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERAG-----IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD------- 89 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHT-----CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-------
T ss_pred CCCcCEEEEecccCcHHHHHHHHcC-----CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccc-------
Confidence 5789999999999999999998871 35899999999998552 2334788999998655432
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
..++||+|+|... .++... ..+....++.++.+ +|||||+|++.+.++
T Consensus 90 ~~~~fD~V~~~~~----l~~~~~---~~~~~~~~l~~i~~------------------~Lk~gG~~i~~~~~~ 137 (252)
T d1ri5a_ 90 LGKEFDVISSQFS----FHYAFS---TSESLDIAQRNIAR------------------HLRPGGYFIMTVPSR 137 (252)
T ss_dssp CSSCEEEEEEESC----GGGGGS---SHHHHHHHHHHHHH------------------TEEEEEEEEEEEECH
T ss_pred ccccceEEEEcce----eeecCC---CHHHHHHHHHHHhc------------------eeCCCCEEEEEecCH
Confidence 3578999999542 222221 23446678888888 999999999987654
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.3e-15 Score=119.06 Aligned_cols=137 Identities=12% Similarity=0.141 Sum_probs=94.5
Q ss_pred CChHHHHHHhhchh--hh-hHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc
Q 038391 7 PDFFYREAQRLGYV--AR-SAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL 83 (186)
Q Consensus 7 ~~~~~~~~~~~~y~--~r-~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~ 83 (186)
.+.|....+...+- .. ..-.|.+....+..++++.+|||+|||+|..+.++++. |.+|+|||+|+.+|+.+
T Consensus 10 ~e~W~~~~~~~~~~w~~~~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~------G~~V~gvD~S~~ai~~a 83 (229)
T d2bzga1 10 LEEWQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR------GHSVVGVEISELGIQEF 83 (229)
T ss_dssp HHHHHHHHHHTCCTTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT------TCEEEEECSCHHHHHHH
T ss_pred HHHHHHHHccCCCCCccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC------CCcEEEEeCCHHHHHHH
Confidence 46677666554321 11 11235555555555788999999999999999999997 68999999999887421
Q ss_pred -----------------------CCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHH
Q 038391 84 -----------------------HCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELG 140 (186)
Q Consensus 84 -----------------------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~ 140 (186)
....+++++++|+.++... ..+.||+|+.... .+.... +..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~-------~~~~fd~i~~~~~-----l~~~~~----~~r 147 (229)
T d2bzga1 84 FTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRT-------NIGKFDMIWDRGA-----LVAINP----GDR 147 (229)
T ss_dssp HHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGS-------CCCCEEEEEESSS-----TTTSCG----GGH
T ss_pred HHHhhccccccchhcccccceeeecCCcEEEEEcchhhcccc-------ccCceeEEEEEEE-----EEeccc----hhh
Confidence 1234788888888766533 3579999998443 222221 124
Q ss_pred HHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 141 MRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
+..+..+.+ +|||||++++..+..+
T Consensus 148 ~~~~~~~~~------------------~LkpgG~~~l~~~~~~ 172 (229)
T d2bzga1 148 KCYADTMFS------------------LLGKKFQYLLCVLSYD 172 (229)
T ss_dssp HHHHHHHHH------------------TEEEEEEEEEEEEECC
T ss_pred HHHHHHHHh------------------hcCCcceEEEEEcccC
Confidence 567777777 9999999998887654
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.56 E-value=2.3e-15 Score=120.12 Aligned_cols=124 Identities=19% Similarity=0.127 Sum_probs=85.3
Q ss_pred chhhhhHH--hHHHHHHHc---CCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCCCC
Q 038391 18 GYVARSAF--KLLQIQKQY---KLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCDAR 88 (186)
Q Consensus 18 ~y~~r~~~--~l~~~~~~~---~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~~~ 88 (186)
.||.+.++ ||...+... ..++||.+|||+|||+|..+.++++..+ +++|+|+|+|+.|++. +....+
T Consensus 48 e~r~w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~----~g~V~aVDiS~~~i~~a~~~a~~~~n 123 (230)
T d1g8sa_ 48 EYRIWNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIAD----KGIVYAIEYAPRIMRELLDACAEREN 123 (230)
T ss_dssp EEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTT----TSEEEEEESCHHHHHHHHHHTTTCTT
T ss_pred eeeeECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCC----CCEEEEEeCcHHHHHHHHHHHhhhcc
Confidence 36655544 676655442 2369999999999999999999999864 5899999999999754 344567
Q ss_pred eEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcc
Q 038391 89 VQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGV 168 (186)
Q Consensus 89 ~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (186)
+.++.+|........ .....+|+++++. +..+. ...++.++.+ .
T Consensus 124 i~~i~~d~~~~~~~~-----~~~~~v~~i~~~~-------~~~~~------~~~~l~~~~r------------------~ 167 (230)
T d1g8sa_ 124 IIPILGDANKPQEYA-----NIVEKVDVIYEDV-------AQPNQ------AEILIKNAKW------------------F 167 (230)
T ss_dssp EEEEECCTTCGGGGT-----TTCCCEEEEEECC-------CSTTH------HHHHHHHHHH------------------H
T ss_pred cceEEEeeccCcccc-----cccceeEEeeccc-------cchHH------HHHHHHHHHH------------------h
Confidence 888888876554221 0122344454432 22222 5677888887 9
Q ss_pred cccCcEEEEEEcc
Q 038391 169 LKPGGHLVIKLLE 181 (186)
Q Consensus 169 LkpgG~lvi~~~~ 181 (186)
|||||.++|....
T Consensus 168 LKpgG~~~i~~k~ 180 (230)
T d1g8sa_ 168 LKKGGYGMIAIKA 180 (230)
T ss_dssp EEEEEEEEEEEEG
T ss_pred cccCceEEEEeec
Confidence 9999999987543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.55 E-value=1.4e-15 Score=119.65 Aligned_cols=122 Identities=16% Similarity=0.121 Sum_probs=85.8
Q ss_pred hhhhhHH--hHHHHHHHc--CCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCCCCeE
Q 038391 19 YVARSAF--KLLQIQKQY--KLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCDARVQ 90 (186)
Q Consensus 19 y~~r~~~--~l~~~~~~~--~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~~~~~ 90 (186)
||.+.++ +|...+... ..++||.+|||+|||+|..+.++++.+++ ++|+|+|+|+.|++. +....++.
T Consensus 32 ~r~w~p~rsklaa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~----g~V~gvDis~~~i~~a~~~a~~~~ni~ 107 (209)
T d1nt2a_ 32 YREWVPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDE----GIIYAVEYSAKPFEKLLELVRERNNII 107 (209)
T ss_dssp EEECCGGGCHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTT----SEEEEECCCHHHHHHHHHHHHHCSSEE
T ss_pred eeeeCCcchHHHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccC----CeEEEEeCCHHHHHHHHHHhhccCCce
Confidence 5443333 555444332 24699999999999999999999999864 799999999999764 23346888
Q ss_pred EEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccc
Q 038391 91 TVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLK 170 (186)
Q Consensus 91 ~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk 170 (186)
++.+|+.+..... .....+|+|+.+.. +..+ ...++.++.+ .||
T Consensus 108 ~i~~d~~~~~~~~-----~~~~~vd~v~~~~~------~~~~-------~~~~l~~~~~------------------~Lk 151 (209)
T d1nt2a_ 108 PLLFDASKPWKYS-----GIVEKVDLIYQDIA------QKNQ-------IEILKANAEF------------------FLK 151 (209)
T ss_dssp EECSCTTCGGGTT-----TTCCCEEEEEECCC------STTH-------HHHHHHHHHH------------------HEE
T ss_pred EEEeeccCccccc-----cccceEEEEEeccc------Chhh-------HHHHHHHHHH------------------Hhc
Confidence 9988887654321 01346777776542 1111 4567888888 999
Q ss_pred cCcEEEEEEc
Q 038391 171 PGGHLVIKLL 180 (186)
Q Consensus 171 pgG~lvi~~~ 180 (186)
|||.++|...
T Consensus 152 pgG~l~i~~~ 161 (209)
T d1nt2a_ 152 EKGEVVIMVK 161 (209)
T ss_dssp EEEEEEEEEE
T ss_pred cCCeEEEEEE
Confidence 9999998764
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.55 E-value=3.5e-15 Score=118.97 Aligned_cols=125 Identities=23% Similarity=0.214 Sum_probs=90.9
Q ss_pred chhhhhHH--hHHHHHHHc---CCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCCCC
Q 038391 18 GYVARSAF--KLLQIQKQY---KLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCDAR 88 (186)
Q Consensus 18 ~y~~r~~~--~l~~~~~~~---~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~~~ 88 (186)
.||.+.++ ||...+... ..++||.+|||+|||+|..+.++++.+++ .++|+|+|+++.|+.. +....+
T Consensus 47 e~R~w~p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~---~G~V~aVD~s~~~l~~a~~~a~~~~~ 123 (227)
T d1g8aa_ 47 EYRIWNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGW---EGKIFGIEFSPRVLRELVPIVEERRN 123 (227)
T ss_dssp EEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCT---TSEEEEEESCHHHHHHHHHHHSSCTT
T ss_pred eEEEECCCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCC---CCEEEEEeCcHHHHHHHHHHHHhcCC
Confidence 35554444 666644432 24799999999999999999999999976 6999999999999754 334456
Q ss_pred eEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcc
Q 038391 89 VQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGV 168 (186)
Q Consensus 89 ~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (186)
+..+..|....... ......+|+|+++.+. .+ ....++.++.+ .
T Consensus 124 ~~~i~~d~~~~~~~-----~~~~~~vD~i~~d~~~-------~~------~~~~~l~~~~~------------------~ 167 (227)
T d1g8aa_ 124 IVPILGDATKPEEY-----RALVPKVDVIFEDVAQ-------PT------QAKILIDNAEV------------------Y 167 (227)
T ss_dssp EEEEECCTTCGGGG-----TTTCCCEEEEEECCCS-------TT------HHHHHHHHHHH------------------H
T ss_pred ceEEEEECCCcccc-----cccccceEEEEEEccc-------cc------hHHHHHHHHHH------------------h
Confidence 77888887654321 1124689999987531 11 25567888888 9
Q ss_pred cccCcEEEEEEcc
Q 038391 169 LKPGGHLVIKLLE 181 (186)
Q Consensus 169 LkpgG~lvi~~~~ 181 (186)
|||||+++|.++.
T Consensus 168 LkpgG~lvi~~ka 180 (227)
T d1g8aa_ 168 LKRGGYGMIAVKS 180 (227)
T ss_dssp EEEEEEEEEEEEG
T ss_pred cccCCeEEEEEEC
Confidence 9999999997653
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.54 E-value=4.5e-15 Score=114.63 Aligned_cols=109 Identities=23% Similarity=0.252 Sum_probs=79.9
Q ss_pred HHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhH
Q 038391 31 QKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQV 104 (186)
Q Consensus 31 ~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l 104 (186)
+.....+++| +|||+|||+|..+..++++ +.+|+|+|+|+.+++. .....++.+...|+....
T Consensus 23 ~~~~~~~~~g-rvLDiGcG~G~~~~~la~~------g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~---- 91 (198)
T d2i6ga1 23 LAAAKVVAPG-RTLDLGCGNGRNSLYLAAN------GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLT---- 91 (198)
T ss_dssp HHHHTTSCSC-EEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCC----
T ss_pred HHHcccCCCC-cEEEECCCCCHHHHHHHHH------hhhhccccCcHHHHHHHHHHhhhccccchhhhheeccccc----
Confidence 3344455665 9999999999999999997 5799999999999764 122346788888876654
Q ss_pred hhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 105 RALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 105 ~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
+.++||+|++... .+.... ......+..+.+ +|+|||++++..+..
T Consensus 92 -----~~~~fD~I~~~~~-----~~~~~~----~~~~~~l~~~~~------------------~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 92 -----FDGEYDFILSTVV-----MMFLEA----QTIPGLIANMQR------------------CTKPGGYNLIVAAMD 137 (198)
T ss_dssp -----CCCCEEEEEEESC-----GGGSCT----THHHHHHHHHHH------------------TEEEEEEEEEEEEBC
T ss_pred -----ccccccEEEEeee-----eecCCH----HHHHHHHHHHHH------------------HcCCCcEEEEEEecC
Confidence 3578999999553 222211 124467777777 999999999987754
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.52 E-value=1.2e-15 Score=118.14 Aligned_cols=100 Identities=20% Similarity=0.297 Sum_probs=75.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
+.++.+|||+|||+|.++..+ .+++|||+|+.+++.++. .++.++++|+.+++. ++++||+
T Consensus 34 ~~~~~~vLDiGcG~G~~~~~~----------~~~~giD~s~~~~~~a~~-~~~~~~~~d~~~l~~--------~~~~fD~ 94 (208)
T d1vlma_ 34 LLPEGRGVEIGVGTGRFAVPL----------KIKIGVEPSERMAEIARK-RGVFVLKGTAENLPL--------KDESFDF 94 (208)
T ss_dssp HCCSSCEEEETCTTSTTHHHH----------TCCEEEESCHHHHHHHHH-TTCEEEECBTTBCCS--------CTTCEEE
T ss_pred hCCCCeEEEECCCCccccccc----------ceEEEEeCChhhcccccc-ccccccccccccccc--------ccccccc
Confidence 345679999999999887654 246899999999876433 268899999887753 3679999
Q ss_pred EEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 117 V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
|++... ..|..+ ...++.++.+ +|||||.++|..+..+.
T Consensus 95 I~~~~~----l~h~~d-------~~~~l~~~~~------------------~L~pgG~l~i~~~~~~~ 133 (208)
T d1vlma_ 95 ALMVTT----ICFVDD-------PERALKEAYR------------------ILKKGGYLIVGIVDRES 133 (208)
T ss_dssp EEEESC----GGGSSC-------HHHHHHHHHH------------------HEEEEEEEEEEEECSSS
T ss_pred cccccc----cccccc-------cccchhhhhh------------------cCCCCceEEEEecCCcc
Confidence 999542 223333 4467888888 99999999999876543
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.50 E-value=7.6e-15 Score=115.57 Aligned_cols=100 Identities=10% Similarity=0.131 Sum_probs=75.2
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc--CCCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL--HCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~--~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
++.+|||+|||+|.++..+++. +.+|+|||+|+.+++.+ ....+++++++++.+.. ..++||+
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~------g~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~---------~~~~fD~ 84 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEH------FNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ---------LPRRYDN 84 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTT------CSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCC---------CSSCEEE
T ss_pred CCCcEEEEeCCCcHHHHHHHHc------CCeEEEEeCcHHHhhhhhcccccccccccccccccc---------ccccccc
Confidence 4668999999999999999876 47899999999997653 23457899999887654 2478999
Q ss_pred EEeCCCCCCCCCcccchHHHHHHHHHHHHHHc-CCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLAL-GPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 117 V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
|++.. ...|..+ ....+.... + +|||||.++|.+.+.
T Consensus 85 I~~~~----vleh~~d-------~~~~l~~i~~~------------------~Lk~gG~l~i~~pn~ 122 (225)
T d2p7ia1 85 IVLTH----VLEHIDD-------PVALLKRINDD------------------WLAEGGRLFLVCPNA 122 (225)
T ss_dssp EEEES----CGGGCSS-------HHHHHHHHHHT------------------TEEEEEEEEEEEECT
T ss_pred ccccc----eeEecCC-------HHHHHHHHHHH------------------hcCCCceEEEEeCCc
Confidence 99843 2223333 345555554 6 899999999987653
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.50 E-value=1.2e-14 Score=118.42 Aligned_cols=109 Identities=14% Similarity=0.182 Sum_probs=82.2
Q ss_pred HHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhH
Q 038391 30 IQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQV 104 (186)
Q Consensus 30 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l 104 (186)
+.+....+.++.+|||+|||+|.++..+++.++. +.+|+|+|+|+.+++.+ ....+++|.++|+.+++.
T Consensus 18 l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~---~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~--- 91 (281)
T d2gh1a1 18 LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPE---GSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIEL--- 91 (281)
T ss_dssp HHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCT---TCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCC---
T ss_pred HHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCC---CCEEEEEecchhHhhhhhcccccccccccccccccccccc---
Confidence 3344444677889999999999999999998765 57999999999997652 223468899999876642
Q ss_pred hhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 105 RALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 105 ~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
.++||+|++... ..|..+ ...+++.+.+ .|||||.+++..
T Consensus 92 ------~~~fD~v~~~~~----l~~~~d-------~~~~l~~~~~------------------~LkpgG~lii~~ 131 (281)
T d2gh1a1 92 ------NDKYDIAICHAF----LLHMTT-------PETMLQKMIH------------------SVKKGGKIICFE 131 (281)
T ss_dssp ------SSCEEEEEEESC----GGGCSS-------HHHHHHHHHH------------------TEEEEEEEEEEE
T ss_pred ------cCCceEEEEehh----hhcCCC-------HHHHHHHHHH------------------HcCcCcEEEEEE
Confidence 358999999542 223333 4467888888 999999999865
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.50 E-value=1.2e-14 Score=111.64 Aligned_cols=100 Identities=15% Similarity=0.183 Sum_probs=76.7
Q ss_pred CCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhh
Q 038391 35 KLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
..++++.+|||+|||+|.++..+++. ..+|+|+|+++.++.. .....+++++++|+.+...
T Consensus 29 l~~~~g~~VLDiGcGsG~~s~~lA~~------~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~------ 96 (186)
T d1l3ia_ 29 AEPGKNDVAVDVGCGTGGVTLELAGR------VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALC------ 96 (186)
T ss_dssp HCCCTTCEEEEESCTTSHHHHHHHTT------SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHT------
T ss_pred cCCCCCCEEEEEECCeEccccccccc------ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccc------
Confidence 34789999999999999999999876 4799999999999754 2344689999998754321
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
....||.|+++.. .+. ....+..+.+ .|||||++++...
T Consensus 97 --~~~~~D~v~~~~~-----~~~---------~~~~~~~~~~------------------~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 97 --KIPDIDIAVVGGS-----GGE---------LQEILRIIKD------------------KLKPGGRIIVTAI 135 (186)
T ss_dssp --TSCCEEEEEESCC-----TTC---------HHHHHHHHHH------------------TEEEEEEEEEEEC
T ss_pred --ccCCcCEEEEeCc-----ccc---------chHHHHHHHH------------------HhCcCCEEEEEee
Confidence 3468999999652 111 2356677776 9999999998764
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.50 E-value=1.7e-14 Score=113.32 Aligned_cols=106 Identities=23% Similarity=0.322 Sum_probs=78.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
++++.+|||+|||+|..+..+++.+.. ++.+|+|+|+|+.|++.+ ....++.+..+|+.+.+
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~--~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~--------- 105 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQ--PNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--------- 105 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCC--SSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC---------
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcC--CCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc---------
Confidence 578999999999999999999987642 367999999999997652 23456677777765542
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
...+|+|++... .+.... +-...+++++.+ .|||||.|++..+.
T Consensus 106 -~~~~d~i~~~~~-----l~~~~~----~d~~~~l~~i~~------------------~LkpgG~li~~~~~ 149 (225)
T d1im8a_ 106 -IKNASMVILNFT-----LQFLPP----EDRIALLTKIYE------------------GLNPNGVLVLSEKF 149 (225)
T ss_dssp -CCSEEEEEEESC-----GGGSCG----GGHHHHHHHHHH------------------HEEEEEEEEEEEEC
T ss_pred -cccceeeEEeee-----ccccCh----hhHHHHHHHHHH------------------hCCCCceeeccccc
Confidence 457899988432 222211 114578888888 99999999987543
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=1.6e-14 Score=117.06 Aligned_cols=98 Identities=23% Similarity=0.386 Sum_probs=77.4
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-CCCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-HCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
.++.+|||+|||+|.++..+++..+ +.+++|+|+|+.|+..+ ....++++.++|+.+++. ++++||+
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~----~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~--------~~~sfD~ 150 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALP----EITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPF--------SDTSMDA 150 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCT----TSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSB--------CTTCEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCC----CCEEEEecchHhhhhhhhcccccccceeeehhhccC--------CCCCEEE
Confidence 5678999999999999999999864 47999999999998763 234678999999988764 3679999
Q ss_pred EEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 117 V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
|++...+ .+ +.++.+ +|||||.|++.+...+
T Consensus 151 v~~~~~~--------~~----------~~e~~r------------------vLkpgG~l~~~~p~~~ 181 (268)
T d1p91a_ 151 IIRIYAP--------CK----------AEELAR------------------VVKPGGWVITATPGPR 181 (268)
T ss_dssp EEEESCC--------CC----------HHHHHH------------------HEEEEEEEEEEEECTT
T ss_pred EeecCCH--------HH----------HHHHHH------------------HhCCCcEEEEEeeCCc
Confidence 9984421 11 234566 9999999999987543
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.47 E-value=1.9e-14 Score=116.40 Aligned_cols=98 Identities=22% Similarity=0.401 Sum_probs=72.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.++|.+|||+|||+|.++..+++. +.+|+|+|+++.+++.+ ....+.+++++|+.+.. +.
T Consensus 118 ~~~g~~VLDiGcGsG~l~i~aa~~------g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~---------~~ 182 (254)
T d2nxca1 118 LRPGDKVLDLGTGSGVLAIAAEKL------GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAAL---------PF 182 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT------TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHG---------GG
T ss_pred cCccCEEEEcccchhHHHHHHHhc------CCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccc---------cc
Confidence 578999999999999999887765 57999999999998652 12335677777764321 24
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
++||+|+++.. . ......+....+ .|||||+|+++.+.
T Consensus 183 ~~fD~V~ani~--------~------~~l~~l~~~~~~------------------~LkpGG~lilSgil 220 (254)
T d2nxca1 183 GPFDLLVANLY--------A------ELHAALAPRYRE------------------ALVPGGRALLTGIL 220 (254)
T ss_dssp CCEEEEEEECC--------H------HHHHHHHHHHHH------------------HEEEEEEEEEEEEE
T ss_pred cccchhhhccc--------c------ccHHHHHHHHHH------------------hcCCCcEEEEEecc
Confidence 68999999642 1 113455666666 99999999997553
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=1.1e-14 Score=114.26 Aligned_cols=107 Identities=18% Similarity=0.117 Sum_probs=78.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
..++.+|||+|||+|.++..+++.. ..+|+|||+|+.|+..+ ....+++|.++|+.+++. +
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~--------~ 124 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPL-----FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP--------E 124 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTT-----CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC--------C
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhc-----CCEEEEeecCHHHhhcccccccccccccccccccccccccc--------c
Confidence 3567899999999999999987663 35899999999997642 123467899999887653 3
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
.++||+|++... ..|..+ .....++..+.+ +|||||.+++.....+
T Consensus 125 ~~~fD~I~~~~~----l~h~~~-----~~~~~~l~~i~~------------------~Lk~~G~~~i~~~~~~ 170 (222)
T d2ex4a1 125 PDSYDVIWIQWV----IGHLTD-----QHLAEFLRRCKG------------------SLRPNGIIVIKDNMAQ 170 (222)
T ss_dssp SSCEEEEEEESC----GGGSCH-----HHHHHHHHHHHH------------------HEEEEEEEEEEEEEBS
T ss_pred cccccccccccc----cccchh-----hhhhhHHHHHHH------------------hcCCcceEEEEEcccc
Confidence 579999999432 122221 123467777887 9999999999865443
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.45 E-value=1.8e-14 Score=113.38 Aligned_cols=80 Identities=19% Similarity=0.173 Sum_probs=63.5
Q ss_pred HHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhh
Q 038391 30 IQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQ 103 (186)
Q Consensus 30 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~ 103 (186)
++... .+++|.+|||+|||+|+++..+++.+++ .++|+++|+++.+++. .....++.++++|..+....
T Consensus 67 ~l~~l-~l~~g~~VLdiG~GtG~~s~~la~~~~~---~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~- 141 (213)
T d1dl5a1 67 FMEWV-GLDKGMRVLEIGGGTGYNAAVMSRVVGE---KGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE- 141 (213)
T ss_dssp HHHHT-TCCTTCEEEEECCTTSHHHHHHHHHHCT---TCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG-
T ss_pred HHHhh-hccccceEEEecCccchhHHHHHHHhCC---CCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccc-
Confidence 44433 3899999999999999999999999875 6899999999998755 22346788888887765432
Q ss_pred HhhhCCCCCCccEEEeCC
Q 038391 104 VRALSPKQKGFSVILSDM 121 (186)
Q Consensus 104 l~~~~~~~~~~D~V~~d~ 121 (186)
.++||+|+++.
T Consensus 142 -------~~~fD~I~~~~ 152 (213)
T d1dl5a1 142 -------FSPYDVIFVTV 152 (213)
T ss_dssp -------GCCEEEEEECS
T ss_pred -------ccchhhhhhhc
Confidence 46899999965
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.44 E-value=4.4e-14 Score=114.82 Aligned_cols=110 Identities=20% Similarity=0.246 Sum_probs=85.3
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc---------CCCCCeEEEEeee
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL---------HCDARVQTVSADV 96 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~---------~~~~~~~~~~~d~ 96 (186)
+-+.++.....++||.+|||+|||+|.+|..+++.+++ .++|+++|+++++++.+ ....++.+.++|+
T Consensus 83 kD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp---~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~ 159 (264)
T d1i9ga_ 83 KDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGP---AGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL 159 (264)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCT---TSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG
T ss_pred HHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCC---CcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccc
Confidence 34445555566899999999999999999999999976 69999999999996542 2346899999988
Q ss_pred cCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEE
Q 038391 97 INLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV 176 (186)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lv 176 (186)
.+... ++++||.|++|++.+ | .++..+.+ +|||||+|+
T Consensus 160 ~~~~~--------~~~~fDaV~ldlp~P----~------------~~l~~~~~------------------~LkpGG~lv 197 (264)
T d1i9ga_ 160 ADSEL--------PDGSVDRAVLDMLAP----W------------EVLDAVSR------------------LLVAGGVLM 197 (264)
T ss_dssp GGCCC--------CTTCEEEEEEESSCG----G------------GGHHHHHH------------------HEEEEEEEE
T ss_pred ccccc--------cCCCcceEEEecCCH----H------------HHHHHHHh------------------ccCCCCEEE
Confidence 76543 367999999987411 1 35556676 999999999
Q ss_pred EEEc
Q 038391 177 IKLL 180 (186)
Q Consensus 177 i~~~ 180 (186)
+-.-
T Consensus 198 ~~~P 201 (264)
T d1i9ga_ 198 VYVA 201 (264)
T ss_dssp EEES
T ss_pred EEeC
Confidence 8654
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.44 E-value=1e-13 Score=106.92 Aligned_cols=102 Identities=17% Similarity=0.260 Sum_probs=76.4
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------C-CCCCeEEEEeeecCCChhhHhhh
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------H-CDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~-~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
.+.++.+|||+|||+|.++..++.. ..+|+++|+++.++..+ . ...+++++++|+.+..
T Consensus 49 ~~~~~~~VLDiGcG~G~~~~~la~~------~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~------- 115 (194)
T d1dusa_ 49 VVDKDDDILDLGCGYGVIGIALADE------VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV------- 115 (194)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHGGG------SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC-------
T ss_pred CcCCCCeEEEEeecCChhHHHHHhh------ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhh-------
Confidence 3677899999999999999999876 46899999999886541 1 2346888889876532
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
++++||+|+++.+.+ .. .+.....+..+.+ +|||||.|++.+.
T Consensus 116 --~~~~fD~Ii~~~p~~-----~~-----~~~~~~~l~~~~~------------------~LkpgG~l~i~~~ 158 (194)
T d1dusa_ 116 --KDRKYNKIITNPPIR-----AG-----KEVLHRIIEEGKE------------------LLKDNGEIWVVIQ 158 (194)
T ss_dssp --TTSCEEEEEECCCST-----TC-----HHHHHHHHHHHHH------------------HEEEEEEEEEEEE
T ss_pred --ccCCceEEEEcccEE-----ec-----chhhhhHHHHHHH------------------hcCcCcEEEEEEe
Confidence 357999999986521 11 1224567778887 9999999987653
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.44 E-value=1.6e-13 Score=112.86 Aligned_cols=117 Identities=14% Similarity=0.148 Sum_probs=81.3
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCC
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINL 99 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~ 99 (186)
+..+.... .+++|.+|||+|||.|+++.++++.. +++|+|+++|+..++. .....++.+...|...
T Consensus 50 ~~~~~~~l-~l~~G~~VLDiGCG~G~~~~~~a~~~-----g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~- 122 (291)
T d1kpia_ 50 RKLALDKL-NLEPGMTLLDIGCGWGSTMRHAVAEY-----DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE- 122 (291)
T ss_dssp HHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGG-
T ss_pred HHHHHHhc-CCCCCCEEEEecCcchHHHHHHHHhc-----CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccc-
Confidence 33344443 48999999999999999999999887 4799999999988543 3445567777666532
Q ss_pred ChhhHhhhCCCCCCccEEEeCCCCCCCCCcccch--HHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 100 PSNQVRALSPKQKGFSVILSDMCPSVSGITTKDA--ALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 100 ~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
.+++||.|++-... .|..+. ....+.....++.+.+ +|||||++++
T Consensus 123 ----------~~~~fD~i~sie~~----eH~~~~~~~~~~~~~~~~f~~i~~------------------~LkpgG~~~l 170 (291)
T d1kpia_ 123 ----------FDEPVDRIVSLGAF----EHFADGAGDAGFERYDTFFKKFYN------------------LTPDDGRMLL 170 (291)
T ss_dssp ----------CCCCCSEEEEESCG----GGTTCCSSCCSTTHHHHHHHHHHH------------------TSCTTCEEEE
T ss_pred ----------cccccceEeechhH----HhcchhhhhhHHHHHHHHHHHHHH------------------hCCCCCceEE
Confidence 25789999983211 011100 0001224578888888 9999999999
Q ss_pred EEccC
Q 038391 178 KLLES 182 (186)
Q Consensus 178 ~~~~~ 182 (186)
.++.-
T Consensus 171 ~~i~~ 175 (291)
T d1kpia_ 171 HTITI 175 (291)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 88753
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.43 E-value=3.5e-14 Score=115.78 Aligned_cols=112 Identities=21% Similarity=0.200 Sum_probs=72.6
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-----CC-----CCeEEEEeeecCCChhhHhhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-----CD-----ARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-----~~-----~~~~~~~~d~~~~~~~~l~~~ 107 (186)
+++.+|||+|||+|..+..+++. +.+|+|+|+|+.||..+. .. ....+...++... ..-
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~------g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 123 (292)
T d1xvaa_ 55 HGCHRVLDVACGTGVDSIMLVEE------GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTL-----DKD 123 (292)
T ss_dssp TTCCEEEESSCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGH-----HHH
T ss_pred cCCCEEEEecCCCcHHHHHHHHc------CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccc-----ccc
Confidence 45789999999999999999987 579999999999976421 11 1222333333221 111
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
....++||.|+|-.. ...|..+.....+....++.++.+ +|||||+|++.+.+
T Consensus 124 ~~~~~~fd~v~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~------------------~LkpgG~li~~~~~ 176 (292)
T d1xvaa_ 124 VPAGDGFDAVICLGN---SFAHLPDSKGDQSEHRLALKNIAS------------------MVRPGGLLVIDHRN 176 (292)
T ss_dssp SCCTTCEEEEEECSS---CGGGSCCTTSSSHHHHHHHHHHHH------------------TEEEEEEEEEEEEC
T ss_pred cCCCCCceEEEEecC---chhhcCCcccChHHHHHHHHHHHH------------------HcCcCcEEEEeecC
Confidence 113578999998321 112222221122335678888888 99999999998753
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.42 E-value=2.6e-13 Score=110.93 Aligned_cols=112 Identities=16% Similarity=0.226 Sum_probs=79.2
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVIN 98 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~ 98 (186)
++..+.... .+++|.+|||+|||.|+++.++++.. +.+|+|||+|+.+++. .....++.+...|...
T Consensus 40 k~~~~~~~l-~l~~g~~VLDiGCG~G~~a~~~a~~~-----g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~ 113 (280)
T d2fk8a1 40 KVDLNLDKL-DLKPGMTLLDIGCGWGTTMRRAVERF-----DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED 113 (280)
T ss_dssp HHHHHHTTS-CCCTTCEEEEESCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG
T ss_pred HHHHHHHHc-CCCCCCEEEEecCCchHHHHHHHHhC-----ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh
Confidence 344444444 48999999999999999999999886 4799999999988643 2344566666666543
Q ss_pred CChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 99 LPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 99 ~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
+ .++||.|++-.. ...... .....+++.+.+ +|||||+++|.
T Consensus 114 ~-----------~~~fD~i~si~~-----~eh~~~----~~~~~~f~~i~~------------------~LkpgG~~~i~ 155 (280)
T d2fk8a1 114 F-----------AEPVDRIVSIEA-----FEHFGH----ENYDDFFKRCFN------------------IMPADGRMTVQ 155 (280)
T ss_dssp C-----------CCCCSEEEEESC-----GGGTCG----GGHHHHHHHHHH------------------HSCTTCEEEEE
T ss_pred h-----------ccchhhhhHhhH-----HHHhhh----hhHHHHHHHHHh------------------ccCCCceEEEE
Confidence 3 468999998321 111110 114577888887 99999999998
Q ss_pred Ecc
Q 038391 179 LLE 181 (186)
Q Consensus 179 ~~~ 181 (186)
..-
T Consensus 156 ~i~ 158 (280)
T d2fk8a1 156 SSV 158 (280)
T ss_dssp EEE
T ss_pred Eee
Confidence 643
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.42 E-value=1.9e-13 Score=112.16 Aligned_cols=111 Identities=19% Similarity=0.195 Sum_probs=82.2
Q ss_pred HHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCC
Q 038391 28 LQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLP 100 (186)
Q Consensus 28 ~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~ 100 (186)
.+.+.....+++|.+|||+|||.|..+.++++.. +++|+||++|+..++. .....++++..+|...+
T Consensus 51 ~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~-----g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~- 124 (285)
T d1kpga_ 51 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY-----DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF- 124 (285)
T ss_dssp HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC-
T ss_pred HHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcC-----CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc-
Confidence 3333334448999999999999999999999987 5899999999987543 44567888888887544
Q ss_pred hhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 101 SNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 101 ~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
.++||.|++-. ...+... .....+++.+.+ +|||||+++|..+
T Consensus 125 ----------~~~fD~i~si~--------~~eh~~~-~~~~~~~~~~~r------------------~LkpgG~~~l~~i 167 (285)
T d1kpga_ 125 ----------DEPVDRIVSIG--------AFEHFGH-ERYDAFFSLAHR------------------LLPADGVMLLHTI 167 (285)
T ss_dssp ----------CCCCSEEEEES--------CGGGTCT-TTHHHHHHHHHH------------------HSCTTCEEEEEEE
T ss_pred ----------cccccceeeeh--------hhhhcCc-hhHHHHHHHHHh------------------hcCCCCcEEEEEE
Confidence 35899998832 1222111 113468888888 9999999999887
Q ss_pred c
Q 038391 181 E 181 (186)
Q Consensus 181 ~ 181 (186)
.
T Consensus 168 ~ 168 (285)
T d1kpga_ 168 T 168 (285)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.41 E-value=8.7e-14 Score=112.23 Aligned_cols=106 Identities=15% Similarity=0.252 Sum_probs=79.3
Q ss_pred HHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCCh
Q 038391 29 QIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPS 101 (186)
Q Consensus 29 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~ 101 (186)
..+.....++||.+|||+|||+|.++..+++.+++ .++|+++|+++.+++. .....++++..+|+.+..
T Consensus 75 ~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~---~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~- 150 (250)
T d1yb2a1 75 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNG---KGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI- 150 (250)
T ss_dssp ------CCCCTTCEEEEECCTTSHHHHHHHHHHTT---SSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC-
T ss_pred HHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCC---CcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccc-
Confidence 33444556899999999999999999999999875 6899999999988654 234468999999886542
Q ss_pred hhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 102 NQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 102 ~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
++..||.|++|++-+ ..++..+.+ .|||||+|++-.-
T Consensus 151 --------~~~~fD~V~ld~p~p----------------~~~l~~~~~------------------~LKpGG~lv~~~P 187 (250)
T d1yb2a1 151 --------SDQMYDAVIADIPDP----------------WNHVQKIAS------------------MMKPGSVATFYLP 187 (250)
T ss_dssp --------CSCCEEEEEECCSCG----------------GGSHHHHHH------------------TEEEEEEEEEEES
T ss_pred --------ccceeeeeeecCCch----------------HHHHHHHHH------------------hcCCCceEEEEeC
Confidence 357899999987411 135666666 9999999998644
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.40 E-value=3.4e-13 Score=108.41 Aligned_cols=103 Identities=15% Similarity=0.068 Sum_probs=76.8
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----CCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----HCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
.++.+|||+|||+|..+..++... ..+|++||+++.|++.+ ....++++.++|+.++.. +.++
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~-----~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~--------~~~~ 158 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKL-----YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATL--------PPNT 158 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHH-----CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCC--------CSSC
T ss_pred CCCCeEEEecccCChhhHHHHhhc-----CceEEEEcCCHHHHHhhhccccccccceeEEcccccccc--------CCCc
Confidence 456799999999999999988764 25899999999998652 233457888898877653 3579
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
||+|++... ..|..+ .....++..+.+ .|||||.++|+..
T Consensus 159 fD~I~~~~v----l~hl~d-----~d~~~~l~~~~~------------------~LkpgG~iii~e~ 198 (254)
T d1xtpa_ 159 YDLIVIQWT----AIYLTD-----ADFVKFFKHCQQ------------------ALTPNGYIFFKEN 198 (254)
T ss_dssp EEEEEEESC----GGGSCH-----HHHHHHHHHHHH------------------HEEEEEEEEEEEE
T ss_pred cceEEeecc----ccccch-----hhhHHHHHHHHH------------------hcCCCcEEEEEec
Confidence 999999542 222222 224567888887 9999999999754
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=3e-13 Score=112.74 Aligned_cols=107 Identities=21% Similarity=0.297 Sum_probs=78.6
Q ss_pred HHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----------------cCCCCCeEEE
Q 038391 30 IQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----------------LHCDARVQTV 92 (186)
Q Consensus 30 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----------------~~~~~~~~~~ 92 (186)
++.....++||.+|||+|||+|.++..+++.+++ .++|+++|+++.++.. .....++.+.
T Consensus 89 ~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~---~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~ 165 (324)
T d2b25a1 89 MILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGS---QGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 165 (324)
T ss_dssp HHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCT---TCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHHHhCCCCCCEEEEecccccHHHHHHHHHhCC---CcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEE
Confidence 3344445899999999999999999999999976 6899999999988543 1234689999
Q ss_pred EeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccC
Q 038391 93 SADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPG 172 (186)
Q Consensus 93 ~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lkpg 172 (186)
++|+.+..... +...||.|+.|++-+. .++..+.+ +||||
T Consensus 166 ~~di~~~~~~~------~~~~fD~V~LD~p~P~----------------~~l~~~~~------------------~LKpG 205 (324)
T d2b25a1 166 HKDISGATEDI------KSLTFDAVALDMLNPH----------------VTLPVFYP------------------HLKHG 205 (324)
T ss_dssp ESCTTCCC-------------EEEEEECSSSTT----------------TTHHHHGG------------------GEEEE
T ss_pred ecchhhccccc------CCCCcceEeecCcCHH----------------HHHHHHHH------------------hccCC
Confidence 99987654321 3568999999985211 24666777 99999
Q ss_pred cEEEEEE
Q 038391 173 GHLVIKL 179 (186)
Q Consensus 173 G~lvi~~ 179 (186)
|+|++-+
T Consensus 206 G~lv~~~ 212 (324)
T d2b25a1 206 GVCAVYV 212 (324)
T ss_dssp EEEEEEE
T ss_pred CEEEEEe
Confidence 9999854
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.38 E-value=5.6e-13 Score=110.86 Aligned_cols=116 Identities=22% Similarity=0.275 Sum_probs=85.0
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
.+++|++|||+|||+|+++..++.. +..+|+++|+++.+++. +....+++++++|+.+.. ..+.
T Consensus 142 ~~~~g~~VLDl~~g~G~~si~~a~~-----ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~----~~~~ 212 (324)
T d2as0a2 142 WVQPGDRVLDVFTYTGGFAIHAAIA-----GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEM----EKLQ 212 (324)
T ss_dssp GCCTTCEEEETTCTTTHHHHHHHHT-----TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHH----HHHH
T ss_pred hcCCCCeeecccCcccchhhhhhhc-----CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhh----HHHH
Confidence 3578999999999999999999876 23589999999999654 334467899999986532 1121
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
..+.+||+|++|+++.... ..............+..+.+ +|||||+|++..-
T Consensus 213 ~~~~~fD~Vi~DpP~~~~~--~~~~~~~~~~y~~l~~~a~~------------------ll~pGG~lv~~s~ 264 (324)
T d2as0a2 213 KKGEKFDIVVLDPPAFVQH--EKDLKAGLRAYFNVNFAGLN------------------LVKDGGILVTCSC 264 (324)
T ss_dssp HTTCCEEEEEECCCCSCSS--GGGHHHHHHHHHHHHHHHHT------------------TEEEEEEEEEEEC
T ss_pred hccCCCCchhcCCccccCC--HHHHHHHHHHHHHHHHHHHH------------------HcCCCcEEEEEeC
Confidence 1357999999998754433 33334444455667777777 9999999998653
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=5.2e-14 Score=111.33 Aligned_cols=106 Identities=19% Similarity=0.128 Sum_probs=74.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
++|.+|||+|||+|..+..+++.. ..+|+|||+|+.+++.+ ....++.++..++...... + +.+
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~-----~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~ 120 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAP-----IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPT----L--PDG 120 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSC-----EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGG----S--CTT
T ss_pred cCCCeEEEeeccchHHHHHHHHcC-----CCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccc----c--ccc
Confidence 678899999999999999998862 36899999999997652 2334566666665432211 1 467
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
+||.|+.|........... .....++.++.+ +|||||+|++.
T Consensus 121 ~fD~i~fD~~~~~~~~~~~------~~~~~~~~~~~r------------------~LkpGG~~~~~ 162 (229)
T d1zx0a1 121 HFDGILYDTYPLSEETWHT------HQFNFIKNHAFR------------------LLKPGGVLTYC 162 (229)
T ss_dssp CEEEEEECCCCCBGGGTTT------HHHHHHHHTHHH------------------HEEEEEEEEEC
T ss_pred cccceeecccccccccccc------cCHHHHHHHHHH------------------HcCCCcEEEEE
Confidence 9999998764322222221 225567888888 99999999863
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.7e-13 Score=108.69 Aligned_cols=75 Identities=25% Similarity=0.299 Sum_probs=60.9
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----------CCCCCeEEEEeeecCCChhhH
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----------HCDARVQTVSADVINLPSNQV 104 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----------~~~~~~~~~~~d~~~~~~~~l 104 (186)
.+++|.+|||+|||+|+.+..+++..++ .++|+++|+++.+++.+ ....++.+..+|.......
T Consensus 73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~---~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~-- 147 (224)
T d1i1na_ 73 QLHEGAKALDVGSGSGILTACFARMVGC---TGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE-- 147 (224)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCT---TCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG--
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhCC---CceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccch--
Confidence 4789999999999999999999999875 68999999999996541 1235788889998765433
Q ss_pred hhhCCCCCCccEEEeCC
Q 038391 105 RALSPKQKGFSVILSDM 121 (186)
Q Consensus 105 ~~~~~~~~~~D~V~~d~ 121 (186)
..+||.|+++.
T Consensus 148 ------~~~fD~I~~~~ 158 (224)
T d1i1na_ 148 ------EAPYDAIHVGA 158 (224)
T ss_dssp ------GCCEEEEEECS
T ss_pred ------hhhhhhhhhhc
Confidence 46899999965
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.33 E-value=8.8e-13 Score=102.32 Aligned_cols=129 Identities=19% Similarity=0.204 Sum_probs=94.2
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCCh
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPS 101 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~ 101 (186)
+.+++.... ++++..+||+|||+|+.+..+++.++ +++|+|+|.++.|++.+ ....+++++++++.+...
T Consensus 12 l~evi~~l~-~~~~~~~lD~t~G~Gghs~~il~~~~----~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~ 86 (192)
T d1m6ya2 12 VREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCP----GCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADF 86 (192)
T ss_dssp HHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCT----TCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHH
T ss_pred HHHHHHhhC-CCCCCEEEEecCCCcHHHHHHHhcCC----CCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHH
Confidence 344555544 68899999999999999999999985 58999999999997652 235689999998876532
Q ss_pred hhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 102 NQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 102 ~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
.+..+ ..++||.|+.|...+ .....+...........+..+.+ +|+|||.+++..|+
T Consensus 87 -~~~~~--~~~~vdgIl~DlGvS--s~Qld~~~r~~~~~~~~L~~a~~------------------~Lk~gG~l~ii~f~ 143 (192)
T d1m6ya2 87 -LLKTL--GIEKVDGILMDLGVS--TYQLKGENRELENLKEFLKKAED------------------LLNPGGRIVVISFH 143 (192)
T ss_dssp -HHHHT--TCSCEEEEEEECSCC--HHHHHTSHTHHHHHHHHHHHGGG------------------GEEEEEEEEEEESS
T ss_pred -HHHHc--CCCCcceeeeccchh--HhhhhhhhccchhHHHHHHHHHH------------------hcCCCCeeeeeccc
Confidence 12222 247999999987532 22222223344556677888887 99999999999998
Q ss_pred CC
Q 038391 182 SQ 183 (186)
Q Consensus 182 ~~ 183 (186)
+.
T Consensus 144 s~ 145 (192)
T d1m6ya2 144 SL 145 (192)
T ss_dssp HH
T ss_pred cH
Confidence 63
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.33 E-value=7.6e-13 Score=107.45 Aligned_cols=109 Identities=19% Similarity=0.212 Sum_probs=81.6
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVIN 98 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~ 98 (186)
+.+.++.....++||.+|||+|||+|.++..+++.+++ +++|+++|+++.+++. .....++.+...|+..
T Consensus 90 kd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~---~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~ 166 (266)
T d1o54a_ 90 KDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGS---SGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE 166 (266)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTT---TCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG
T ss_pred HHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc
Confidence 34445555566899999999999999999999999875 6899999999999654 2234567776666543
Q ss_pred CChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 99 LPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 99 ~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
.. ....||.|+.+++. ...++..+.+ +|||||+|++-
T Consensus 167 ~~---------~~~~~D~V~~d~p~----------------p~~~l~~~~~------------------~LKpGG~lv~~ 203 (266)
T d1o54a_ 167 GF---------DEKDVDALFLDVPD----------------PWNYIDKCWE------------------ALKGGGRFATV 203 (266)
T ss_dssp CC---------SCCSEEEEEECCSC----------------GGGTHHHHHH------------------HEEEEEEEEEE
T ss_pred cc---------cccceeeeEecCCC----------------HHHHHHHHHh------------------hcCCCCEEEEE
Confidence 21 35689999997641 1145667777 99999999986
Q ss_pred Ec
Q 038391 179 LL 180 (186)
Q Consensus 179 ~~ 180 (186)
..
T Consensus 204 ~P 205 (266)
T d1o54a_ 204 CP 205 (266)
T ss_dssp ES
T ss_pred eC
Confidence 54
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.32 E-value=7.9e-13 Score=109.76 Aligned_cols=113 Identities=19% Similarity=0.167 Sum_probs=82.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.+|++|||+|||+|+++..++.. +.+|+++|+|+.++..+ +...+++++++|+.+... .+...+
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g------~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~----~~~~~~ 213 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALG------FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLR----RLEKEG 213 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHH------EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHH----HHHHTT
T ss_pred hCCCeeeccCCCCcHHHHHHHhc------CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhh----hhHhhh
Confidence 36899999999999999998864 47999999999997551 223578999998765421 111135
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
++||+|++|+++...+.. +...........+..+.+ +|||||.|++..-
T Consensus 214 ~~fD~Vi~DpP~~~~~~~--~~~~~~~~~~~l~~~a~~------------------lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 214 ERFDLVVLDPPAFAKGKK--DVERAYRAYKEVNLRAIK------------------LLKEGGILATASC 262 (318)
T ss_dssp CCEEEEEECCCCSCCSTT--SHHHHHHHHHHHHHHHHH------------------TEEEEEEEEEEEC
T ss_pred cCCCEEEEcCCccccchH--HHHHHHHHHHHHHHHHHH------------------HcCCCCEEEEEeC
Confidence 799999999876544432 333344445567777777 9999999998654
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=2.1e-12 Score=105.28 Aligned_cols=111 Identities=15% Similarity=0.155 Sum_probs=81.2
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
+.+.+|||+|||+|.++..++...+ ..+|+++|+|+.++..+ ....+++++++|+.+.. ++
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p----~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~---------~~ 173 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERP----DCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL---------AG 173 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCT----TSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG---------TT
T ss_pred ccccceeeeehhhhHHHHHHHhhCC----cceeeeccchhHHHhHHHHHHHHhCcccceeeeccccccc---------CC
Confidence 4567899999999999999999875 48999999999996541 22247999999875431 35
Q ss_pred CCccEEEeCCCCCCCCC--------------cccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 112 KGFSVILSDMCPSVSGI--------------TTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
.+||+|++|+|.-.... ...............+..+.+ .|+|||.+++
T Consensus 174 ~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~------------------~L~~~G~l~l 235 (274)
T d2b3ta1 174 QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRN------------------ALVSGGFLLL 235 (274)
T ss_dssp CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGG------------------GEEEEEEEEE
T ss_pred CceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHH------------------hcCCCCEEEE
Confidence 69999999976321110 001113344566778888887 9999999999
Q ss_pred EE
Q 038391 178 KL 179 (186)
Q Consensus 178 ~~ 179 (186)
.+
T Consensus 236 Ei 237 (274)
T d2b3ta1 236 EH 237 (274)
T ss_dssp EC
T ss_pred EE
Confidence 75
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.31 E-value=5.8e-13 Score=104.18 Aligned_cols=109 Identities=12% Similarity=0.124 Sum_probs=78.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
+...|||||||+|.++..+|+..+ ...++|+|+++.++.. .....|+.++++|+..+. ..+ +.+
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p----~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~----~~~--~~~ 98 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNP----DINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT----DVF--EPG 98 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCT----TSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHH----HHC--CTT
T ss_pred CCceEEEEEecCcHHHHHHHHhCC----CCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhh----ccc--Cch
Confidence 455899999999999999999975 5899999999998754 233468999999986542 112 467
Q ss_pred CccEEEeCCCCC-CCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 113 GFSVILSDMCPS-VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 113 ~~D~V~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
++|.|++..+.+ ....+...+. ....++..+.+ +|||||.|+|.+
T Consensus 99 ~~d~v~i~fp~P~~k~~h~k~Rl----~~~~~l~~~~r------------------~LkpgG~l~i~T 144 (204)
T d2fcaa1 99 EVKRVYLNFSDPWPKKRHEKRRL----TYSHFLKKYEE------------------VMGKGGSIHFKT 144 (204)
T ss_dssp SCCEEEEESCCCCCSGGGGGGST----TSHHHHHHHHH------------------HHTTSCEEEEEE
T ss_pred hhhccccccccccchhhhcchhh----hHHHHHHHHHH------------------hCCCCcEEEEEE
Confidence 899998765422 2222211110 12367788887 999999999875
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=6.3e-13 Score=107.26 Aligned_cols=117 Identities=9% Similarity=0.011 Sum_probs=72.7
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCC--CCeEEEEeCCCCCCCCc----CCCCCeEEEEeeecCCChhhH---hhhC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDN--GGSVVGIDVKKVKVPSL----HCDARVQTVSADVINLPSNQV---RALS 108 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~--~~~v~gvDis~~~i~~~----~~~~~~~~~~~d~~~~~~~~l---~~~~ 108 (186)
++..+|||+|||+|.++..++..+....+ ..+++|||+|+.|+..+ ....++..+..++........ ....
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK 118 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence 44458999999999999888765421111 24789999999997541 112222223333333222111 0112
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
.+.++||+|++... ..|..+ ...++..+.+ +|||||.|+|.++...
T Consensus 119 ~~~~~fD~I~~~~~----l~~~~d-------~~~~l~~l~~------------------~LkpgG~l~i~~~~~~ 164 (280)
T d1jqea_ 119 KELQKWDFIHMIQM----LYYVKD-------IPATLKFFHS------------------LLGTNAKMLIIVVSGS 164 (280)
T ss_dssp SSCCCEEEEEEESC----GGGCSC-------HHHHHHHHHH------------------TEEEEEEEEEEEECTT
T ss_pred CCCCceeEEEEccc----eecCCC-------HHHHHHHHHh------------------hCCCCCEEEEEEecCc
Confidence 24689999999432 223333 4578888888 9999999999887654
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.29 E-value=5.8e-12 Score=100.62 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=78.7
Q ss_pred HHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCCh
Q 038391 29 QIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPS 101 (186)
Q Consensus 29 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~ 101 (186)
.+...+. +.+..+|||+|||+|.++..++++++ +.+++++|+ +.+++. .....+++++.+|+.+..
T Consensus 71 ~~~~~~d-~~~~~~VLDvGcG~G~~~~~la~~~p----~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~- 143 (253)
T d1tw3a2 71 APAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAP----HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL- 143 (253)
T ss_dssp HHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC-
T ss_pred HHHhhcC-CccCCEEEEeCCCCCHHHHHHHHhcc----eeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc-
Confidence 3444443 56678999999999999999999975 589999998 555433 345578999999986532
Q ss_pred hhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 102 NQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 102 ~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
..+||+|++.. ..|.... +.....+.++.+ .|||||+|+|...
T Consensus 144 ---------~~~~D~v~~~~-----vlh~~~d----~~~~~~L~~~~~------------------~LkPGG~l~i~e~ 186 (253)
T d1tw3a2 144 ---------PRKADAIILSF-----VLLNWPD----HDAVRILTRCAE------------------ALEPGGRILIHER 186 (253)
T ss_dssp ---------SSCEEEEEEES-----CGGGSCH----HHHHHHHHHHHH------------------TEEEEEEEEEEEC
T ss_pred ---------ccchhheeecc-----ccccCCc----hhhHHHHHHHHH------------------hcCCCcEEEEEec
Confidence 35799999843 2333221 224466777777 9999999998754
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.29 E-value=2.1e-12 Score=102.45 Aligned_cols=74 Identities=14% Similarity=0.163 Sum_probs=58.7
Q ss_pred cCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 34 YKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 34 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
...++++.+|||+|||+|+.|..+++. .++|+++|+++.++.. .....++.++.+|.......
T Consensus 65 ~L~l~~g~~VLdIG~GsGy~ta~La~l------~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~------- 131 (224)
T d1vbfa_ 65 ELDLHKGQKVLEIGTGIGYYTALIAEI------VDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEE------- 131 (224)
T ss_dssp HTTCCTTCEEEEECCTTSHHHHHHHHH------SSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGG-------
T ss_pred HhhhcccceEEEecCCCCHHHHHHHHH------hcccccccccHHHHHHHHHHHhcccccccccCchhhcchh-------
Confidence 334799999999999999999999987 4799999999988654 12346899999987654322
Q ss_pred CCCCccEEEeCC
Q 038391 110 KQKGFSVILSDM 121 (186)
Q Consensus 110 ~~~~~D~V~~d~ 121 (186)
..+||.|++..
T Consensus 132 -~~pfD~Iiv~~ 142 (224)
T d1vbfa_ 132 -EKPYDRVVVWA 142 (224)
T ss_dssp -GCCEEEEEESS
T ss_pred -hhhHHHHHhhc
Confidence 46899999854
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=6.5e-12 Score=103.16 Aligned_cols=102 Identities=18% Similarity=0.257 Sum_probs=73.3
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC------CcCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP------SLHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~------~~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.+.++++|||+|||+|.++..+++. + ..+|+|+|.++.+.. ......+++++++|+.++..
T Consensus 32 ~~~~~~~VLDiGcG~G~lsl~aa~~-G----a~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~-------- 98 (311)
T d2fyta1 32 HIFKDKVVLDVGCGTGILSMFAAKA-G----AKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHL-------- 98 (311)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHT-T----CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCC--------
T ss_pred ccCCcCEEEEECCCCCHHHHHHHHc-C----CCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcC--------
Confidence 3457899999999999999988886 2 358999999997742 14456789999999877653
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEE
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV 176 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lv 176 (186)
+..+||+|++....+. .... ......+....+ +|||||.++
T Consensus 99 ~~~~~D~Ivse~~~~~--~~~e------~~~~~~~~a~~~------------------~Lkp~G~ii 139 (311)
T d2fyta1 99 PVEKVDVIISEWMGYF--LLFE------SMLDSVLYAKNK------------------YLAKGGSVY 139 (311)
T ss_dssp SCSCEEEEEECCCBTT--BTTT------CHHHHHHHHHHH------------------HEEEEEEEE
T ss_pred ccccceEEEEeeeeee--cccc------cccHHHHHHHHh------------------cCCCCcEEe
Confidence 3579999999643111 1111 124455555566 899999987
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.25 E-value=3.3e-13 Score=111.95 Aligned_cols=114 Identities=28% Similarity=0.340 Sum_probs=79.9
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
.++|.+|||+|||+|+.|.++++.+.+ .+.++++|+++..+.. .....++.+...|...... .
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~---~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~--------~ 182 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRN---DGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE--------L 182 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTT---CSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG--------G
T ss_pred CCccceeeecccchhhhhHhhhhhccc---ccceeeeccCHHHHHHHHHHHHHHHhhcccccccccccccc--------c
Confidence 688999999999999999999999875 6899999999988543 1223455555555443321 2
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHH-----------HHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSV-----------ELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
...||.|++|++|+..|....+..... .+....+..+.. .|||||+||-.+
T Consensus 183 ~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~------------------~lk~gG~lVYsT 244 (313)
T d1ixka_ 183 NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLE------------------VLKPGGILVYST 244 (313)
T ss_dssp CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHH------------------HEEEEEEEEEEE
T ss_pred cccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhh------------------eeCCCcEEEEee
Confidence 568999999999999998655433322 233344455554 999999998655
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.25 E-value=5.8e-12 Score=103.91 Aligned_cols=100 Identities=18% Similarity=0.232 Sum_probs=72.8
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC------CcCCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP------SLHCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~------~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.+|++|||+|||+|.++..+++. + ..+|+|+|.++.+.. .+....+++++++|+.+... +.
T Consensus 32 ~~~~~VLDiGcG~G~ls~~aa~~-G----a~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~--------~~ 98 (316)
T d1oria_ 32 FKDKVVLDVGSGTGILCMFAAKA-G----ARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVEL--------PV 98 (316)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-T----CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCC--------SS
T ss_pred CCcCEEEEEecCCcHHHHHHHHh-C----CCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHccc--------cc
Confidence 46889999999999999988886 2 358999999986522 14556789999999877653 35
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEE
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV 176 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lv 176 (186)
++||+|++.... ....... .....+....+ +|||||.++
T Consensus 99 ~~~D~ivs~~~~--~~l~~e~------~~~~~l~~~~r------------------~Lkp~G~ii 137 (316)
T d1oria_ 99 EKVDIIISEWMG--YCLFYES------MLNTVLHARDK------------------WLAPDGLIF 137 (316)
T ss_dssp SCEEEEEECCCB--BTBTBTC------CHHHHHHHHHH------------------HEEEEEEEE
T ss_pred ceeEEEeeeeee--eeeccHH------HHHHHHHHHHh------------------cCCCCeEEE
Confidence 799999996431 1111111 15567777777 999999987
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=6.7e-13 Score=108.62 Aligned_cols=115 Identities=22% Similarity=0.275 Sum_probs=77.9
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.++|.+|||+|||+|+.|..+++.+. .++|+++|+++.++.. .....+...+..+....... . ..
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~----~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~----~--~~ 169 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAP----EAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQW----C--GE 169 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCT----TCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHH----H--TT
T ss_pred ccccceeEeccCccccchhhhhhhhh----hhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchh----c--cc
Confidence 57899999999999999999999764 4899999999999643 11111222222221111111 1 24
Q ss_pred CCccEEEeCCCCCCCCCcccchHHH-----------HHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALS-----------VELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
..||.|++|++|+..|....+.... ..+....+..+.+ +|||||+||=++
T Consensus 170 ~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~------------------~lk~gG~lvYsT 230 (284)
T d1sqga2 170 QQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWP------------------HLKTGGTLVYAT 230 (284)
T ss_dssp CCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGG------------------GEEEEEEEEEEE
T ss_pred ccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHH------------------hcCCCceEEEee
Confidence 6899999999999999865544333 2234455555555 999999998654
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.24 E-value=4e-12 Score=99.34 Aligned_cols=109 Identities=14% Similarity=0.145 Sum_probs=78.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
....|||||||+|.++..+|+..+ ...++|+|+++.++.. .....|+.++++|+..+... + +..
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p----~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~----~--~~~ 100 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNP----DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDY----F--EDG 100 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCT----TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGT----S--CTT
T ss_pred CCCeEEEEeccCCHHHHHHHHHCC----CCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhh----c--cCC
Confidence 345899999999999999999975 4899999999988654 22346899999998765311 1 467
Q ss_pred CccEEEeCCC-CCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 113 GFSVILSDMC-PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 113 ~~D~V~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
++|.|++..+ |....-|...+ -....++....+ +|||||.|.|++
T Consensus 101 ~~~~i~i~fPdPw~K~~h~krR----l~~~~~l~~~~~------------------~LkpgG~l~i~T 146 (204)
T d1yzha1 101 EIDRLYLNFSDPWPKKRHEKRR----LTYKTFLDTFKR------------------ILPENGEIHFKT 146 (204)
T ss_dssp CCSEEEEESCCCCCSGGGGGGS----TTSHHHHHHHHH------------------HSCTTCEEEEEE
T ss_pred ceehhcccccccccchhhhhhh----hhHHHHHHHHHH------------------hCCCCcEEEEEE
Confidence 8999988654 22222221111 012467777777 999999999876
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=4.5e-12 Score=105.42 Aligned_cols=111 Identities=14% Similarity=0.161 Sum_probs=79.3
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc---------------CCCCCeEE
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL---------------HCDARVQT 91 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~---------------~~~~~~~~ 91 (186)
+.+++.... ++++.+|||+|||+|..+..+++..+ ..+++|||+++.++..+ ....++++
T Consensus 140 ~~~~~~~~~-l~~~~~vlD~GcG~G~~~~~~a~~~~----~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~ 214 (328)
T d1nw3a_ 140 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATN----CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL 214 (328)
T ss_dssp HHHHHHHSC-CCTTCEEEEETCTTSHHHHHHHHHCC----CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred HHHHHHHcC-CCCCCEEEEcCCCCCHHHHHHHHHhC----CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEE
Confidence 344555544 78999999999999999999998864 36899999999886431 13457999
Q ss_pred EEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCccccc
Q 038391 92 VSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKP 171 (186)
Q Consensus 92 ~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lkp 171 (186)
+++|+.+.+... .+ ..+|+|+++. ..+..+ ....+.+..+ .|||
T Consensus 215 ~~gd~~~~~~~~--~~----~~advi~~~~-----~~f~~~-------~~~~l~e~~r------------------~LKp 258 (328)
T d1nw3a_ 215 ERGDFLSEEWRE--RI----ANTSVIFVNN-----FAFGPE-------VDHQLKERFA------------------NMKE 258 (328)
T ss_dssp EECCTTSHHHHH--HH----HHCSEEEECC-----TTTCHH-------HHHHHHHHHT------------------TCCT
T ss_pred EECccccccccc--cc----CcceEEEEcc-----eecchH-------HHHHHHHHHH------------------hCCC
Confidence 999998765331 11 2468888742 123222 4466777777 9999
Q ss_pred CcEEEEE
Q 038391 172 GGHLVIK 178 (186)
Q Consensus 172 gG~lvi~ 178 (186)
||++|+.
T Consensus 259 Gg~iv~~ 265 (328)
T d1nw3a_ 259 GGRIVSS 265 (328)
T ss_dssp TCEEEES
T ss_pred CcEEEEe
Confidence 9999863
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.21 E-value=1.1e-11 Score=102.74 Aligned_cols=114 Identities=17% Similarity=0.150 Sum_probs=77.6
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCC-CCCeEEEEeeecCCChhhHhhhC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHC-DARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~-~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
+.+|.+|||++||+|+++..++.. +..+|++||+++.++.. +.. ..+++++++|+.+. +..+.
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~-----ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~----l~~~~ 212 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMG-----GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDY----FKYAR 212 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHT-----TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHH----HHHHH
T ss_pred hhCCCceeecCCCCcHHHHHHHhC-----CCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHH----HHHHH
Confidence 567999999999999999887764 13589999999998654 233 35789999998643 22222
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
..+.+||+|++|+|........ ...........+..+.+ +|+|||.|++..
T Consensus 213 ~~~~~fD~Ii~DPP~f~~~~~~--~~~~~~~~~~L~~~a~~------------------ll~pgG~l~~~s 263 (317)
T d2b78a2 213 RHHLTYDIIIIDPPSFARNKKE--VFSVSKDYHKLIRQGLE------------------ILSENGLIIAST 263 (317)
T ss_dssp HTTCCEEEEEECCCCC-----C--CCCHHHHHHHHHHHHHH------------------TEEEEEEEEEEE
T ss_pred hhcCCCCEEEEcChhhccchhH--HHHHHHHHHHHHHHHHH------------------HcCCCCEEEEEe
Confidence 2357899999998633221111 11222334456666766 999999999865
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.21 E-value=1.3e-11 Score=91.79 Aligned_cols=72 Identities=15% Similarity=0.148 Sum_probs=56.2
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
+|.+|||+|||+|.++..++.+ +..+|+++|+++.++.. .....+++++++|+...... ..
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~r-----ga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~-------~~ 81 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSR-----GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC-------LT 81 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHT-----TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH-------BC
T ss_pred CCCeEEEcCCccCHHHHHHHHh-----Ccceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccc-------cc
Confidence 5899999999999999988887 23599999999988542 33446799999987653211 35
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
++||+|++|+|
T Consensus 82 ~~fDiIf~DPP 92 (152)
T d2esra1 82 GRFDLVFLDPP 92 (152)
T ss_dssp SCEEEEEECCS
T ss_pred cccceeEechh
Confidence 78999999975
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.20 E-value=1.2e-11 Score=102.37 Aligned_cols=100 Identities=16% Similarity=0.218 Sum_probs=70.8
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCC------CCcCCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKV------PSLHCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i------~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.+|++|||+|||+|.++..+++. + ..+|+|+|.++.+. .......+++++++|+.++.. +.
T Consensus 37 ~~~~~VLDlGcGtG~ls~~aa~~-G----a~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~--------~~ 103 (328)
T d1g6q1_ 37 FKDKIVLDVGCGTGILSMFAAKH-G----AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHL--------PF 103 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-C----CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCC--------SS
T ss_pred CCcCEEEEeCCCCCHHHHHHHHh-C----CCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccC--------cc
Confidence 46899999999999999888876 2 35899999997331 113456789999999877643 35
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEE
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV 176 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lv 176 (186)
.+||+|++...... ..+.. .....+....+ +|||||.++
T Consensus 104 ~~~D~i~se~~~~~-~~~e~-------~~~~~~~a~~r------------------~LkpgG~ii 142 (328)
T d1g6q1_ 104 PKVDIIISEWMGYF-LLYES-------MMDTVLYARDH------------------YLVEGGLIF 142 (328)
T ss_dssp SCEEEEEECCCBTT-BSTTC-------CHHHHHHHHHH------------------HEEEEEEEE
T ss_pred cceeEEEEEeccee-eccch-------hHHHHHHHHHh------------------ccCCCeEEE
Confidence 79999999653111 11111 14456666666 999999986
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.18 E-value=5.5e-12 Score=101.91 Aligned_cols=98 Identities=16% Similarity=0.137 Sum_probs=75.2
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
.+++|++|||+|||+|.++..+++.. +++|+++|+++.++.. ++...+++++++|+.++.
T Consensus 104 ~~~~g~~VlD~~aG~G~~~l~~a~~~-----~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~-------- 170 (260)
T d2frna1 104 VAKPDELVVDMFAGIGHLSLPIAVYG-----KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-------- 170 (260)
T ss_dssp HCCTTCEEEETTCTTTTTHHHHHHHT-----CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC--------
T ss_pred hcCCccEEEECcceEcHHHHHHHHhC-----CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc--------
Confidence 36899999999999999999999872 4699999999988543 455667999999987764
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
..+.||.|+.+.++.. ..++..+.+ +|++||++.+..+
T Consensus 171 -~~~~~D~Ii~~~p~~~---------------~~~l~~a~~------------------~l~~gG~lh~~~~ 208 (260)
T d2frna1 171 -GENIADRILMGYVVRT---------------HEFIPKALS------------------IAKDGAIIHYHNT 208 (260)
T ss_dssp -CCSCEEEEEECCCSSG---------------GGGHHHHHH------------------HEEEEEEEEEEEE
T ss_pred -cCCCCCEEEECCCCch---------------HHHHHHHHh------------------hcCCCCEEEEEec
Confidence 3468999998765321 123444555 8999999876554
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.16 E-value=1.5e-11 Score=96.74 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=60.4
Q ss_pred cCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhh
Q 038391 34 YKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 34 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
...++++.+|||+|||+|+.+..+++.+ +++|+++|+.+.++.. .....++.++++|.......
T Consensus 73 ~L~l~~g~~VLeIGsGsGY~taila~l~-----g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~----- 142 (215)
T d1jg1a_ 73 IANLKPGMNILEVGTGSGWNAALISEIV-----KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPP----- 142 (215)
T ss_dssp HHTCCTTCCEEEECCTTSHHHHHHHHHH-----CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG-----
T ss_pred hhccCccceEEEecCCCChhHHHHHHhh-----CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcc-----
Confidence 3348999999999999999999999886 4689999999988654 23447899999998765432
Q ss_pred CCCCCCccEEEeCC
Q 038391 108 SPKQKGFSVILSDM 121 (186)
Q Consensus 108 ~~~~~~~D~V~~d~ 121 (186)
..+||.|++..
T Consensus 143 ---~~pfD~Iiv~~ 153 (215)
T d1jg1a_ 143 ---KAPYDVIIVTA 153 (215)
T ss_dssp ---GCCEEEEEECS
T ss_pred ---cCcceeEEeec
Confidence 57899999954
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.12 E-value=2.2e-11 Score=96.30 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=60.4
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCC--CCCeEEEEeCCCCCCCCcC-----------CCCCeEEEEeeecCCChh
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLD--NGGSVVGIDVKKVKVPSLH-----------CDARVQTVSADVINLPSN 102 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~--~~~~v~gvDis~~~i~~~~-----------~~~~~~~~~~d~~~~~~~ 102 (186)
.++++.+|||+|||+|+.|..+++.+++.+ .+.+|+++|+++.+++.+. ...++.++++|..+....
T Consensus 77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~ 156 (223)
T d1r18a_ 77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP 156 (223)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccc
Confidence 478999999999999999999998875311 1348999999998865421 224789999998765432
Q ss_pred hHhhhCCCCCCccEEEeCCC
Q 038391 103 QVRALSPKQKGFSVILSDMC 122 (186)
Q Consensus 103 ~l~~~~~~~~~~D~V~~d~~ 122 (186)
..+||.|++..+
T Consensus 157 --------~~~fD~Iiv~~a 168 (223)
T d1r18a_ 157 --------NAPYNAIHVGAA 168 (223)
T ss_dssp --------GCSEEEEEECSC
T ss_pred --------ccceeeEEEEee
Confidence 468999999654
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.12 E-value=4.4e-11 Score=98.83 Aligned_cols=118 Identities=17% Similarity=0.114 Sum_probs=78.7
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCC-CCCeEEEEeeecCCChhhHhhhC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHC-DARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~-~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
..++.+|||++||+|.++..++.. +.+|++||.|+.+++. +.. ..+++++++|+..... ...
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~------GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~----~~~ 199 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAA------GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQ----REE 199 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHH----HHH
T ss_pred ccCCCeEEEecCCCcHHHHHHHhC------CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHH----HHh
Confidence 457889999999999999999875 5799999999999754 122 3468999999865421 111
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
..+++||+|++|++.-..+..... ..........+..+.. +|+|||.+++.+-++.
T Consensus 200 ~~~~~fD~IilDPP~f~~~~~~~~-~~~~~~~~~l~~~~~~------------------ll~~~g~~ll~t~~s~ 255 (309)
T d2igta1 200 RRGSTYDIILTDPPKFGRGTHGEV-WQLFDHLPLMLDICRE------------------ILSPKALGLVLTAYSI 255 (309)
T ss_dssp HHTCCBSEEEECCCSEEECTTCCE-EEHHHHHHHHHHHHHH------------------TBCTTCCEEEEEECCT
T ss_pred hcCCCCCEEEECCCcccccccchh-HHHHHHHHHHHHHHHH------------------hcCCCCCEEEEecCCC
Confidence 125799999999863222211110 1111223345555665 8999998777766554
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=3.5e-11 Score=98.63 Aligned_cols=88 Identities=22% Similarity=0.282 Sum_probs=63.5
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
.++|.+|||+|||+|+.|.++++.+++ .++|+++|+++..+.. .....++.+...|........- .
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~---~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~-----~ 163 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKN---QGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDP-----R 163 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCG-----G
T ss_pred CCccceEEecccchhhHHHHHHHHhcC---CceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhccccc-----c
Confidence 578999999999999999999999875 6899999999988543 2233567787888766542210 1
Q ss_pred CCCccEEEeCCCCCCCCCcccc
Q 038391 111 QKGFSVILSDMCPSVSGITTKD 132 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~ 132 (186)
.++||.|++|++|+..|....+
T Consensus 164 ~~~fD~VL~DaPCSg~G~~~r~ 185 (293)
T d2b9ea1 164 YHEVHYILLDPSCSGSGMPSRQ 185 (293)
T ss_dssp GTTEEEEEECCCCCC-------
T ss_pred cceeeEEeecCcccchhhhccc
Confidence 2579999999999998876543
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=2.8e-12 Score=101.41 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=33.4
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
..++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~-----~~~v~giD~S~~~i~~ 89 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDS-----FQDITLSDFTDRNREE 89 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGT-----EEEEEEEESCHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccc-----cCcEEEecCCHHHHHH
Confidence 3567899999999999988777652 2479999999999754
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.07 E-value=1e-10 Score=93.77 Aligned_cols=108 Identities=17% Similarity=0.150 Sum_probs=77.1
Q ss_pred HHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChh
Q 038391 30 IQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSN 102 (186)
Q Consensus 30 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~ 102 (186)
+...+. +....+|||+|||+|.++..+++.++ +.+++++|+ +.+++. .....++.+..+|+....
T Consensus 73 ~~~~~d-~~~~~~vlDvG~G~G~~~~~l~~~~P----~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~-- 144 (256)
T d1qzza2 73 PADAYD-WSAVRHVLDVGGGNGGMLAAIALRAP----HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL-- 144 (256)
T ss_dssp HHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--
T ss_pred HHhcCC-CccCCEEEEECCCCCHHHHHHHHhhc----CcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccc--
Confidence 444443 56678999999999999999999985 589999998 445432 345578999988876532
Q ss_pred hHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 103 QVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 103 ~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
..++|+|++.. ..|.... +.....++++.+ .|||||+|+|..+
T Consensus 145 --------p~~~D~v~~~~-----vLh~~~d----~~~~~lL~~i~~------------------~LkpgG~llI~d~ 187 (256)
T d1qzza2 145 --------PVTADVVLLSF-----VLLNWSD----EDALTILRGCVR------------------ALEPGGRLLVLDR 187 (256)
T ss_dssp --------SCCEEEEEEES-----CGGGSCH----HHHHHHHHHHHH------------------HEEEEEEEEEEEC
T ss_pred --------cccchhhhccc-----cccccCc----HHHHHHHHHHHh------------------hcCCcceeEEEEe
Confidence 24699999843 2333322 234566777777 9999999998754
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.04 E-value=9.4e-11 Score=91.01 Aligned_cols=89 Identities=19% Similarity=0.162 Sum_probs=62.7
Q ss_pred chhhhhHH--hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-CCCCCeEEEEe
Q 038391 18 GYVARSAF--KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-HCDARVQTVSA 94 (186)
Q Consensus 18 ~y~~r~~~--~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-~~~~~~~~~~~ 94 (186)
.|...+.. .++........+ .|++|||+|||+|.++..++.. + ..+|+|+|+++.+++.+ .+..++.++++
T Consensus 26 Qy~T~~~~a~~~~~~~~~~~dl-~Gk~VLDlGcGtG~l~i~a~~~-g----a~~V~~vDid~~a~~~ar~N~~~~~~~~~ 99 (197)
T d1ne2a_ 26 QYPTDASTAAYFLIEIYNDGNI-GGRSVIDAGTGNGILACGSYLL-G----AESVTAFDIDPDAIETAKRNCGGVNFMVA 99 (197)
T ss_dssp -CCCCHHHHHHHHHHHHHHTSS-BTSEEEEETCTTCHHHHHHHHT-T----BSEEEEEESCHHHHHHHHHHCTTSEEEEC
T ss_pred cCCCCHHHHHHHHHHHHHcCCC-CCCEEEEeCCCCcHHHHHHHHc-C----CCcccccccCHHHHHHHHHccccccEEEE
Confidence 35544433 333444444444 5899999999999998877775 2 35899999999987652 23457889999
Q ss_pred eecCCChhhHhhhCCCCCCccEEEeCCCC
Q 038391 95 DVINLPSNQVRALSPKQKGFSVILSDMCP 123 (186)
Q Consensus 95 d~~~~~~~~l~~~~~~~~~~D~V~~d~~~ 123 (186)
|+.++ .++||+|++|++.
T Consensus 100 D~~~l-----------~~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 100 DVSEI-----------SGKYDTWIMNPPF 117 (197)
T ss_dssp CGGGC-----------CCCEEEEEECCCC
T ss_pred ehhhc-----------CCcceEEEeCccc
Confidence 88654 3689999999763
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.03 E-value=4.3e-11 Score=90.69 Aligned_cols=77 Identities=17% Similarity=0.071 Sum_probs=51.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
+.+|.+|||+|||+|.++..++.+ +.+|+++|+++.++... ......++...+.... +.......
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~------ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~----~~~~~~~~ 108 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE------GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVF----LPEAKAQG 108 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT------TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHH----HHHHHHTT
T ss_pred ccCCCeEEEeccccchhhhhhhhc------cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcc----cccccccC
Confidence 567899999999999999988887 57999999999996531 1111223333333211 11111135
Q ss_pred CCccEEEeCCCC
Q 038391 112 KGFSVILSDMCP 123 (186)
Q Consensus 112 ~~~D~V~~d~~~ 123 (186)
.+||+|++|+|.
T Consensus 109 ~~fD~If~DPPY 120 (171)
T d1ws6a1 109 ERFTVAFMAPPY 120 (171)
T ss_dssp CCEEEEEECCCT
T ss_pred CccceeEEcccc
Confidence 689999999864
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=99.03 E-value=1.7e-10 Score=88.42 Aligned_cols=127 Identities=21% Similarity=0.249 Sum_probs=91.8
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC--cCCCCCeEEEEeeecCCChhhH
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS--LHCDARVQTVSADVINLPSNQV 104 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~--~~~~~~~~~~~~d~~~~~~~~l 104 (186)
+.|++..+. +++|..++|.++|.|+.+..+.+. +++|+|+|..+.++.. .....++.++++++.+... .+
T Consensus 7 l~Evl~~l~-~~~g~~~vD~T~G~GGhs~~iL~~------~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~-~l 78 (182)
T d1wg8a2 7 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER------GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKR-HL 78 (182)
T ss_dssp HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHH-HH
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCcHHHHHHhcc------cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHH-HH
Confidence 344554444 688999999999999999999986 5899999999998754 2345689999998887532 22
Q ss_pred hhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 105 RALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 105 ~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
..+ ..+++|.|+.|...+... ..+...........+..+.. +|+|||.+++..||+.
T Consensus 79 ~~~--~~~~vdgIl~DLGvSs~q--ld~~~re~~~~~~~L~~~~~------------------~lk~gg~~~ii~fhs~ 135 (182)
T d1wg8a2 79 AAL--GVERVDGILADLGVSSFH--LDDPSDELNALKEFLEQAAE------------------VLAPGGRLVVIAFHSL 135 (182)
T ss_dssp HHT--TCSCEEEEEEECSCCHHH--HHCGGTHHHHHHHHHHHHHH------------------HEEEEEEEEEEECSHH
T ss_pred HHc--CCCccCEEEEEccCCHHH--hhcchHHHHHHHHHHHHHHh------------------hhCCCCeEEEEecccc
Confidence 233 246899999998643322 22233334445567777777 9999999999999864
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.03 E-value=2.3e-10 Score=97.64 Aligned_cols=51 Identities=22% Similarity=0.328 Sum_probs=41.8
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
+.+++.... ++++.++||||||+|..+..++..++ ..+|+|||+++.++..
T Consensus 205 i~~Il~~l~-Lkpgd~fLDLGCG~G~~vl~aA~~~g----~~~v~GIDiS~~~i~~ 255 (406)
T d1u2za_ 205 LSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECG----CALSFGCEIMDDASDL 255 (406)
T ss_dssp HHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHC----CSEEEEEECCHHHHHH
T ss_pred HHHHHHHhC-CCCCCEEEeCCCCCcHHHHHHHHHcC----CCeEEEEeCCHHHHHH
Confidence 334555544 79999999999999999999999885 2589999999988654
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=5.5e-11 Score=95.45 Aligned_cols=115 Identities=21% Similarity=0.291 Sum_probs=69.4
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-----CCC-------------------------
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-----CDA------------------------- 87 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-----~~~------------------------- 87 (186)
.+|.+|||+|||+|.++...+... ..+|+|+|+|+.|++..+ ...
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~~~-----~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 127 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSACSH-----FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKE 127 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGG-----CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHH
T ss_pred CCCcEEEEeccCCCHHHHHHhccc-----CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhH
Confidence 457899999999998876655443 358999999999965310 000
Q ss_pred ------CeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCC
Q 038391 88 ------RVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSD 161 (186)
Q Consensus 88 ------~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (186)
....+..|+.... .+.......++||+|++... .+.... ..+....++.++.+
T Consensus 128 ~~~~~~~~~~~~~Dv~~~~--~~~~~~~~~~~fD~V~~~~~-----l~~i~~--~~~~~~~~l~~~~~------------ 186 (263)
T d2g72a1 128 RQLRARVKRVLPIDVHQPQ--PLGAGSPAPLPADALVSAFC-----LEAVSP--DLASFQRALDHITT------------ 186 (263)
T ss_dssp HHHHHHEEEEECCCTTSSS--TTCSSCSSCSSEEEEEEESC-----HHHHCS--SHHHHHHHHHHHHT------------
T ss_pred HHhhhhhhccccccccCCC--ccccCCcCcCccCeeeeHHH-----HHHHcc--CHHHHHHHHHHHHH------------
Confidence 0112223333221 11111113468999998332 111110 11235678888888
Q ss_pred CCCCCcccccCcEEEEEEccCCC
Q 038391 162 SSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 162 ~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
+|||||.|++....+.+
T Consensus 187 ------~LkPGG~li~~~~~~~~ 203 (263)
T d2g72a1 187 ------LLRPGGHLLLIGALEES 203 (263)
T ss_dssp ------TEEEEEEEEEEEEESCC
T ss_pred ------HcCCCCEEEEecccCCc
Confidence 99999999998776553
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=99.01 E-value=1.7e-09 Score=83.24 Aligned_cols=82 Identities=18% Similarity=0.294 Sum_probs=60.7
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhh
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRA 106 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~ 106 (186)
+.++.......+++.+|||.|||+|.++..+.+.... ...++|+|+++..+... ....++++|.....
T Consensus 7 i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~---~~~i~g~ei~~~~~~~~---~~~~~~~~~~~~~~------ 74 (223)
T d2ih2a1 7 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGT---AYRFVGVEIDPKALDLP---PWAEGILADFLLWE------ 74 (223)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCS---CSEEEEEESCTTTCCCC---TTEEEEESCGGGCC------
T ss_pred HHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccc---cceEEeeecCHHHHhhc---ccceeeeeehhccc------
Confidence 3443344444678899999999999999999888764 57899999999886542 23566777765443
Q ss_pred hCCCCCCccEEEeCCCC
Q 038391 107 LSPKQKGFSVILSDMCP 123 (186)
Q Consensus 107 ~~~~~~~~D~V~~d~~~ 123 (186)
...+||+|++|++.
T Consensus 75 ---~~~~fd~ii~npP~ 88 (223)
T d2ih2a1 75 ---PGEAFDLILGNPPY 88 (223)
T ss_dssp ---CSSCEEEEEECCCC
T ss_pred ---cccccceecccCcc
Confidence 35789999999764
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.99 E-value=3.8e-10 Score=87.48 Aligned_cols=82 Identities=21% Similarity=0.241 Sum_probs=59.2
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLP 100 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~ 100 (186)
.+.........+ +|.+|||+|||+|.++..++.. + ..+|+|+|+++.++.. .....+.+++.+|+...
T Consensus 34 ~~~~~~~~~~dl-~g~~vLDlg~GtG~l~i~a~~~-g----~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~- 106 (201)
T d1wy7a1 34 ELLWLAYSLGDI-EGKVVADLGAGTGVLSYGALLL-G----AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF- 106 (201)
T ss_dssp HHHHHHHHTTSS-TTCEEEEETCTTCHHHHHHHHT-T----CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC-
T ss_pred HHHHHHHhcCCC-CCCEEEECcCcchHHHHHHHHc-C----CCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh-
Confidence 334444443333 5789999999999999988765 2 3589999999988654 23345677888876543
Q ss_pred hhhHhhhCCCCCCccEEEeCCCCC
Q 038391 101 SNQVRALSPKQKGFSVILSDMCPS 124 (186)
Q Consensus 101 ~~~l~~~~~~~~~~D~V~~d~~~~ 124 (186)
.++||+|++|+++.
T Consensus 107 ----------~~~fD~Vi~nPP~~ 120 (201)
T d1wy7a1 107 ----------NSRVDIVIMNPPFG 120 (201)
T ss_dssp ----------CCCCSEEEECCCCS
T ss_pred ----------CCcCcEEEEcCccc
Confidence 46899999998753
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.98 E-value=6.8e-10 Score=84.79 Aligned_cols=82 Identities=13% Similarity=0.096 Sum_probs=60.0
Q ss_pred HHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhH
Q 038391 32 KQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQV 104 (186)
Q Consensus 32 ~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l 104 (186)
+.....-+|.+|||++||+|.++..++.+ |..+|++||.++..+.. .....++++++.|+... +
T Consensus 34 n~l~~~~~~~~vLDlfaGsG~~g~ea~sr-----Ga~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~----l 104 (182)
T d2fhpa1 34 NMIGPYFDGGMALDLYSGSGGLAIEAVSR-----GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRA----L 104 (182)
T ss_dssp HHHCSCCSSCEEEETTCTTCHHHHHHHHT-----TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH----H
T ss_pred HHHHHhcCCCEEEEcccccccccceeeec-----chhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhh----h
Confidence 33333456899999999999999999997 23589999999988543 23445788999987643 2
Q ss_pred hhhCCCCCCccEEEeCCC
Q 038391 105 RALSPKQKGFSVILSDMC 122 (186)
Q Consensus 105 ~~~~~~~~~~D~V~~d~~ 122 (186)
..+...+.+||+|++|+|
T Consensus 105 ~~~~~~~~~fDlIflDPP 122 (182)
T d2fhpa1 105 EQFYEEKLQFDLVLLDPP 122 (182)
T ss_dssp HHHHHTTCCEEEEEECCC
T ss_pred hhhcccCCCcceEEechh
Confidence 222223568999999986
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.92 E-value=3.5e-10 Score=88.57 Aligned_cols=104 Identities=16% Similarity=0.190 Sum_probs=74.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
+..+|||+|||+|..+..+++.+++ +++|+++|+++.+++. +....+++++.+|..+......... ..
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~---~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~--~~ 130 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQP---GARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKY--DV 130 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCT---TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHS--CC
T ss_pred CCCEEEEEccCchhHHHHHHHhCCC---ccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcc--cc
Confidence 4579999999999999999998865 6899999999987543 3455689999998875432221222 24
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
++||+|+.|.. +... .....+.+..+ +|||||.+++
T Consensus 131 ~~~D~ifiD~~------~~~~------~~~~~l~~~~~------------------lLkpGGvIv~ 166 (214)
T d2cl5a1 131 DTLDMVFLDHW------KDRY------LPDTLLLEKCG------------------LLRKGTVLLA 166 (214)
T ss_dssp CCEEEEEECSC------GGGH------HHHHHHHHHTT------------------CEEEEEEEEE
T ss_pred cccceeeeccc------cccc------ccHHHHHHHhC------------------ccCCCcEEEE
Confidence 68999999642 2211 12233555666 8999999886
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=6.8e-10 Score=87.29 Aligned_cols=105 Identities=20% Similarity=0.239 Sum_probs=77.0
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
....++||++|||+|+.+..+++.+++ +++|+.+|+++..... +....++++..+|+.+.....+...
T Consensus 57 ~~~~k~vLEiGt~~GyStl~~a~al~~---~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~-- 131 (219)
T d2avda1 57 LIQAKKALDLGTFTGYSALALALALPA---DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAG-- 131 (219)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCT---TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTT--
T ss_pred ccCCCeEEEEechhhHHHHHHHHhCCC---CceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhc--
Confidence 356789999999999999999999875 6899999999987433 4556789999998765432222211
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
..++||+|+.|.. ... ....++.+.+ +|+|||.+++-
T Consensus 132 ~~~~fD~ifiD~d--------k~~------y~~~~~~~~~------------------lL~~GGvii~D 168 (219)
T d2avda1 132 EAGTFDVAVVDAD--------KEN------CSAYYERCLQ------------------LLRPGGILAVL 168 (219)
T ss_dssp CTTCEEEEEECSC--------STT------HHHHHHHHHH------------------HEEEEEEEEEE
T ss_pred ccCCccEEEEeCC--------HHH------HHHHHHHHHH------------------HhcCCcEEEEe
Confidence 2468999999753 111 2345555666 99999999984
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=4.4e-10 Score=85.82 Aligned_cols=72 Identities=13% Similarity=0.135 Sum_probs=54.1
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
.+.+|||++||+|.++..++.+ +..+|+.||.++..+.. .....+..+++.|+.+. + .....
T Consensus 43 ~~~~vLDlfaGsG~~giealsr-----Ga~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~----l---~~~~~ 110 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSR-----YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSF----L---AQKGT 110 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT-----TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHH----H---SSCCC
T ss_pred chhhhhhhhccccceeeeEEec-----CcceeEEEEEeechhhHHHHHHhhccccceeeeeeccccc----c---ccccc
Confidence 5779999999999999998887 24589999999988543 12335677777776532 1 11357
Q ss_pred CccEEEeCCC
Q 038391 113 GFSVILSDMC 122 (186)
Q Consensus 113 ~~D~V~~d~~ 122 (186)
+||+|++|+|
T Consensus 111 ~fDlIf~DPP 120 (183)
T d2fpoa1 111 PHNIVFVDPP 120 (183)
T ss_dssp CEEEEEECCS
T ss_pred ccCEEEEcCc
Confidence 8999999976
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=4.3e-09 Score=84.03 Aligned_cols=79 Identities=9% Similarity=0.073 Sum_probs=57.8
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
+..++||+|||+|.++..++...+ +.+|+|+|+++.++.. +....++.+++.+........+... ..
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~----~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~--~~ 134 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLN----GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEE--SE 134 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH----CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTC--CS
T ss_pred ccceEEEeCCCchHHHHHHHHhCC----CccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhc--cc
Confidence 346899999999999999999875 4899999999999654 3456778888765443222111111 24
Q ss_pred CCccEEEeCCCC
Q 038391 112 KGFSVILSDMCP 123 (186)
Q Consensus 112 ~~~D~V~~d~~~ 123 (186)
++||+|+||+|.
T Consensus 135 ~~fD~ivsNPPY 146 (250)
T d2h00a1 135 IIYDFCMCNPPF 146 (250)
T ss_dssp CCBSEEEECCCC
T ss_pred CceeEEEecCcc
Confidence 689999999874
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.80 E-value=5.5e-08 Score=77.22 Aligned_cols=111 Identities=13% Similarity=0.131 Sum_probs=81.1
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhh
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRA 106 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~ 106 (186)
...+...+..+....+|||+|||+|.++..++++++ +.+++.+|+- ..++......+++++.+|+.+..
T Consensus 69 ~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P----~l~~~v~Dlp-~vi~~~~~~~ri~~~~gd~~~~~------ 137 (244)
T d1fp1d2 69 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYP----LIKGINFDLP-QVIENAPPLSGIEHVGGDMFASV------ 137 (244)
T ss_dssp HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCT----TCEEEEEECH-HHHTTCCCCTTEEEEECCTTTCC------
T ss_pred HHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCC----CCeEEEecch-hhhhccCCCCCeEEecCCccccc------
Confidence 344566666556678999999999999999999986 5899999974 44566666789999999986431
Q ss_pred hCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 107 LSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 107 ~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
+ ..|+++.. .-.|.... +.+...+..+.+ .|+|||+++|.-.
T Consensus 138 ---p--~~D~~~l~-----~vLh~~~d----e~~~~iL~~~~~------------------aL~pgg~llI~e~ 179 (244)
T d1fp1d2 138 ---P--QGDAMILK-----AVCHNWSD----EKCIEFLSNCHK------------------ALSPNGKVIIVEF 179 (244)
T ss_dssp ---C--CEEEEEEE-----SSGGGSCH----HHHHHHHHHHHH------------------HEEEEEEEEEEEE
T ss_pred ---c--cceEEEEe-----hhhhhCCH----HHHHHHHHHHHH------------------HcCCCcEEEEEEE
Confidence 2 45988873 22344332 335566667776 8999999988764
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.78 E-value=1.8e-09 Score=87.42 Aligned_cols=71 Identities=20% Similarity=0.156 Sum_probs=53.9
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
..+|+|+|||+|..+..+++. + ..+|+++|+|+..+.. .....++.+..+|..+.... ..+
T Consensus 111 ~~~vld~g~GsG~i~~~la~~-~----~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~-------~~~ 178 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAKF-S----DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKE-------KFA 178 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHHH-S----SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGG-------GTT
T ss_pred ccEEEEeeeeeehhhhhhhhc-c----cceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccccccc-------ccC
Confidence 458999999999999998864 3 5899999999999654 23445677777777654322 236
Q ss_pred CccEEEeCCC
Q 038391 113 GFSVILSDMC 122 (186)
Q Consensus 113 ~~D~V~~d~~ 122 (186)
+||+|++|+|
T Consensus 179 ~fDlIVsNPP 188 (271)
T d1nv8a_ 179 SIEMILSNPP 188 (271)
T ss_dssp TCCEEEECCC
T ss_pred cccEEEEccc
Confidence 8999999986
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.70 E-value=9.8e-08 Score=75.40 Aligned_cols=111 Identities=14% Similarity=0.152 Sum_probs=77.7
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhh
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRA 106 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~ 106 (186)
...+...+...+...+|||+|||+|.++..++++++ +.+++.+|+.+. ++......+++++.+|+.+..
T Consensus 69 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P----~l~~~v~Dlp~v-i~~~~~~~r~~~~~~d~~~~~------ 137 (243)
T d1kyza2 69 MKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYP----TIKGINFDLPHV-IEDAPSYPGVEHVGGDMFVSI------ 137 (243)
T ss_dssp HHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCT----TSEEEEEECTTT-TTTCCCCTTEEEEECCTTTCC------
T ss_pred HHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCC----CCeEEEcccHHh-hhhcccCCceEEecccccccC------
Confidence 344556666556567999999999999999999986 589999998654 566666789999999986532
Q ss_pred hCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 107 LSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 107 ~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
|. .|.++.. .-.|.... +.....++.+.+ .|+|||+++|...
T Consensus 138 ---P~--ad~~~l~-----~vlh~~~d----~~~~~iL~~~~~------------------al~pgg~~li~d~ 179 (243)
T d1kyza2 138 ---PK--ADAVFMK-----WICHDWSD----EHCLKFLKNCYE------------------ALPDNGKVIVAEC 179 (243)
T ss_dssp ---CC--CSCEECS-----SSSTTSCH----HHHHHHHHHHHH------------------HCCSSSCEEEEEC
T ss_pred ---CC--cceEEEE-----EEeecCCH----HHHHHHHHHHHH------------------hcCCCceEEEEEE
Confidence 22 3444441 12333322 235566777776 8999999888643
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.69 E-value=6.5e-09 Score=82.00 Aligned_cols=105 Identities=12% Similarity=0.244 Sum_probs=75.9
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
....+||++|+++|+-+..+++.+++ +++|+.+|+++..... +....+++++.+++.+.-...+.. ...
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~---~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~-~~~ 133 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPE---DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKD-EKN 133 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCT---TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHC-GGG
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCC---CcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhc-ccc
Confidence 45679999999999999999999876 6899999999977432 445668999999876532221111 001
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
.++||+|+.|.. + .. ....++.+.+ +|+|||.+++-
T Consensus 134 ~~~fD~iFiDa~------k--~~------y~~~~e~~~~------------------ll~~gGiii~D 169 (227)
T d1susa1 134 HGSYDFIFVDAD------K--DN------YLNYHKRLID------------------LVKVGGVIGYD 169 (227)
T ss_dssp TTCBSEEEECSC------S--TT------HHHHHHHHHH------------------HBCTTCCEEEE
T ss_pred CCceeEEEeccc------h--hh------hHHHHHHHHh------------------hcCCCcEEEEc
Confidence 458999999763 1 11 3355666666 99999999984
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.66 E-value=8.7e-09 Score=84.49 Aligned_cols=124 Identities=16% Similarity=0.175 Sum_probs=76.7
Q ss_pred HHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCC-CCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChh
Q 038391 29 QIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLD-NGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSN 102 (186)
Q Consensus 29 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~-~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~ 102 (186)
.++..+...+++.+|||.|||+|.++..+..++...+ ...+++|+|+++.++..+ .......+.++|.....
T Consensus 107 ~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-- 184 (328)
T d2f8la1 107 YLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL-- 184 (328)
T ss_dssp HHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC--
T ss_pred HHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccc--
Confidence 3444444456778999999999999999987764311 134799999999885431 11234556666654332
Q ss_pred hHhhhCCCCCCccEEEeCCCCCCCCCcccchH---------HHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCc
Q 038391 103 QVRALSPKQKGFSVILSDMCPSVSGITTKDAA---------LSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGG 173 (186)
Q Consensus 103 ~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG 173 (186)
+..+||+|++|+|... .+..... .....-..++..+.+ .|+|||
T Consensus 185 -------~~~~fD~vi~NPPy~~--~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~------------------~Lk~~G 237 (328)
T d2f8la1 185 -------LVDPVDVVISDLPVGY--YPDDENAKTFELCREEGHSFAHFLFIEQGMR------------------YTKPGG 237 (328)
T ss_dssp -------CCCCEEEEEEECCCSE--ESCHHHHTTSTTCCSSSCEEHHHHHHHHHHH------------------TEEEEE
T ss_pred -------ccccccccccCCCCCC--CccchhhhhcchhcccCcchHHHHHHHHHHH------------------hcCCCC
Confidence 3578999999987421 1111000 000012235666666 999999
Q ss_pred EEEEEEcc
Q 038391 174 HLVIKLLE 181 (186)
Q Consensus 174 ~lvi~~~~ 181 (186)
++++.+-.
T Consensus 238 ~~~~I~p~ 245 (328)
T d2f8la1 238 YLFFLVPD 245 (328)
T ss_dssp EEEEEEEG
T ss_pred ceEEEecC
Confidence 98887643
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.65 E-value=2e-08 Score=76.98 Aligned_cols=43 Identities=14% Similarity=0.095 Sum_probs=29.1
Q ss_pred CCEEEEEcccCChH----HHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 40 GSSVLDLGCAPGAW----LQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 40 ~~~vLDlGcG~G~~----~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.-+|++.|||+|.- +..+.+.........+|+|.|+++..++.
T Consensus 25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~ 71 (193)
T d1af7a2 25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEK 71 (193)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHH
T ss_pred CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhH
Confidence 35899999999973 33344443322123589999999988643
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.64 E-value=1.5e-08 Score=80.65 Aligned_cols=75 Identities=15% Similarity=0.199 Sum_probs=60.5
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.+++++.|||+|||+|.+|..+++. +.+|++||+++.+++.. ....+++++++|+.+... +.
T Consensus 26 ~~~~~d~VLEIGpG~G~LT~~L~~~------~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~--------~~ 91 (245)
T d1yuba_ 26 NLKETDTVYEIGTGKGHLTTKLAKI------SKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQF--------PN 91 (245)
T ss_dssp CCCSSEEEEECSCCCSSCSHHHHHH------SSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTC--------CC
T ss_pred CCCCCCeEEEECCCccHHHHHHHhh------cCceeEeeecccchhhhhhhhhhccchhhhhhhhhcccc--------cc
Confidence 3678899999999999999999998 47999999999997652 234689999999987653 24
Q ss_pred CCccEEEeCCCCC
Q 038391 112 KGFSVILSDMCPS 124 (186)
Q Consensus 112 ~~~D~V~~d~~~~ 124 (186)
..++.|++|.+.+
T Consensus 92 ~~~~~vv~NLPY~ 104 (245)
T d1yuba_ 92 KQRYKIVGNIPYH 104 (245)
T ss_dssp SSEEEEEEECCSS
T ss_pred ceeeeEeeeeehh
Confidence 5778888887643
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.55 E-value=2.5e-08 Score=75.72 Aligned_cols=75 Identities=17% Similarity=0.199 Sum_probs=51.6
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCC-CCCeEEEEeeecCCChhhHhhhCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHC-DARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~-~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
.+.+|||++||+|.++..++.+ |..+|+.||.+...+.. ... .....+...|+..... ....
T Consensus 43 ~~~~vLDlFaGsG~~glEalSR-----GA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~-----~~~~ 112 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSR-----QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLK-----QPQN 112 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT-----TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTT-----SCCS
T ss_pred ccceEeecccCccceeeeeeee-----cceeeEEeecccchhhhHhhHHhhhccccccccccccccccccc-----cccc
Confidence 5789999999999999999998 34599999999988432 112 2245555555432111 1112
Q ss_pred CCCccEEEeCCCC
Q 038391 111 QKGFSVILSDMCP 123 (186)
Q Consensus 111 ~~~~D~V~~d~~~ 123 (186)
..+||+|++|+|.
T Consensus 113 ~~~fDlIFlDPPY 125 (183)
T d2ifta1 113 QPHFDVVFLDPPF 125 (183)
T ss_dssp SCCEEEEEECCCS
T ss_pred CCcccEEEechhH
Confidence 4579999999873
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.55 E-value=3.8e-07 Score=71.86 Aligned_cols=78 Identities=17% Similarity=0.189 Sum_probs=56.4
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-cCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEE
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-LHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~ 118 (186)
.++||++|++.|+-+..++..+...+..++|+|+|+.+..... .....+++++++|..+.. .+..+ ....+|+|+
T Consensus 81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~--~~~~l--~~~~~dlIf 156 (232)
T d2bm8a1 81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLT--TFEHL--REMAHPLIF 156 (232)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSG--GGGGG--SSSCSSEEE
T ss_pred CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHH--HHHHH--HhcCCCEEE
Confidence 5599999999999888887665322236899999999877554 345678999999977653 22222 244688998
Q ss_pred eCC
Q 038391 119 SDM 121 (186)
Q Consensus 119 ~d~ 121 (186)
.|.
T Consensus 157 ID~ 159 (232)
T d2bm8a1 157 IDN 159 (232)
T ss_dssp EES
T ss_pred EcC
Confidence 875
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.51 E-value=3e-08 Score=81.58 Aligned_cols=109 Identities=19% Similarity=0.190 Sum_probs=77.9
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----------cCCCCCeEEEEeeecCCChhhHhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----------LHCDARVQTVSADVINLPSNQVRA 106 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----------~~~~~~~~~~~~d~~~~~~~~l~~ 106 (186)
+..++||.+|.|.|.....+.+..+ ..+|++||+++..++. ....++++++.+|+.+....
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~----~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~---- 147 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPT----VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER---- 147 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTT----CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH----
T ss_pred CCcceEEEeCCCchHHHHHHHhcCC----cceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhh----
Confidence 4568999999999999999988743 4799999999988643 23467899999998754322
Q ss_pred hCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 107 LSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 107 ~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
.+++||+|++|...+......... -....+++.+.+ .|+|||.+++..
T Consensus 148 ---~~~~yDvIi~D~~dp~~~~~~~~~----L~t~eF~~~~~~------------------~L~p~Gvlv~~~ 195 (312)
T d1uira_ 148 ---TEERYDVVIIDLTDPVGEDNPARL----LYTVEFYRLVKA------------------HLNPGGVMGMQT 195 (312)
T ss_dssp ---CCCCEEEEEEECCCCBSTTCGGGG----GSSHHHHHHHHH------------------TEEEEEEEEEEE
T ss_pred ---cCCcccEEEEeCCCcccccchhhh----hhhHHHHHHHHH------------------hcCCCceEEEec
Confidence 256899999987432221111100 013467788887 999999999864
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.50 E-value=5.6e-08 Score=76.81 Aligned_cols=75 Identities=12% Similarity=0.198 Sum_probs=58.4
Q ss_pred cCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 34 YKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 34 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
...++++++|||+|||+|.+|..+++. +.+|++||+++.++.. .....+++++++|+......
T Consensus 16 ~~~~~~~d~VlEIGpG~G~LT~~Ll~~------~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~------- 82 (235)
T d1qama_ 16 NIRLNEHDNIFEIGSGKGHFTLELVQR------CNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFP------- 82 (235)
T ss_dssp TCCCCTTCEEEEECCTTSHHHHHHHHH------SSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCC-------
T ss_pred hcCCCCCCeEEEECCCchHHHHHHHhC------cCceEEEeeccchHHHHHHHhhcccchhhhhhhhhhcccc-------
Confidence 334688999999999999999999997 4799999999988543 23456899999999876532
Q ss_pred CCCCccEEEeCCC
Q 038391 110 KQKGFSVILSDMC 122 (186)
Q Consensus 110 ~~~~~D~V~~d~~ 122 (186)
......|+.|.+
T Consensus 83 -~~~~~~vv~NLP 94 (235)
T d1qama_ 83 -KNQSYKIFGNIP 94 (235)
T ss_dssp -SSCCCEEEEECC
T ss_pred -ccccceeeeeeh
Confidence 234456778775
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.49 E-value=2.3e-08 Score=80.80 Aligned_cols=104 Identities=16% Similarity=0.197 Sum_probs=74.9
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----------------CCCCCeEEEEeeecCCCh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----------------HCDARVQTVSADVINLPS 101 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----------------~~~~~~~~~~~d~~~~~~ 101 (186)
++.++||.+|.|.|..+..+.++ + ..+|+.|||++..+..+ ..+++++++.+|+.....
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~-~----~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~ 145 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQH-D----VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK 145 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-C----CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH
T ss_pred CCCceEEEecCCchHHHHHHHHh-C----CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHh
Confidence 56789999999999999888875 2 36899999999885431 235789999999864321
Q ss_pred hhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 102 NQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 102 ~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
. .++||+|+.|...+....... ....+++.+.+ .|+|+|.++++.
T Consensus 146 ~--------~~~yDvIi~D~~~~~~~~~~L-------~t~eF~~~~~~------------------~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 146 N--------NRGFDVIIADSTDPVGPAKVL-------FSEEFYRYVYD------------------ALNNPGIYVTQA 190 (276)
T ss_dssp H--------CCCEEEEEEECCCCC-----T-------TSHHHHHHHHH------------------HEEEEEEEEEEE
T ss_pred c--------cCCCCEEEEeCCCCCCCcccc-------cCHHHHHhhHh------------------hcCCCceEEEec
Confidence 1 468999999875322111111 13467888887 999999999875
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.42 E-value=6.7e-07 Score=70.71 Aligned_cols=99 Identities=14% Similarity=0.160 Sum_probs=71.3
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEE
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVI 117 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V 117 (186)
....+|||+|||+|.++..++++++ ..+++..|.. ..++......+++++.+|+.... ..+|++
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~P----~l~~~v~Dlp-~vi~~~~~~~rv~~~~gD~f~~~-----------p~aD~~ 142 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETFP----KLKCIVFDRP-QVVENLSGSNNLTYVGGDMFTSI-----------PNADAV 142 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCT----TCEEEEEECH-HHHTTCCCBTTEEEEECCTTTCC-----------CCCSEE
T ss_pred cCceEEEEecCCccHHHHHHHHhCC----CCeEEEecCH-HHHHhCcccCceEEEecCcccCC-----------CCCcEE
Confidence 3457899999999999999999986 4899999984 34555666789999999986532 257999
Q ss_pred EeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccC---cEEEEEE
Q 038391 118 LSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPG---GHLVIKL 179 (186)
Q Consensus 118 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lkpg---G~lvi~~ 179 (186)
+.. .-.|.... +.+...++.+.+ .|+|| |+++|..
T Consensus 143 ~l~-----~vLHdw~d----~~~~~iL~~~~~------------------al~pgg~~~~lli~e 180 (244)
T d1fp2a2 143 LLK-----YILHNWTD----KDCLRILKKCKE------------------AVTNDGKRGKVTIID 180 (244)
T ss_dssp EEE-----SCGGGSCH----HHHHHHHHHHHH------------------HHSGGGCCCEEEEEE
T ss_pred EEE-----eecccCCh----HHHHHHHHHHHH------------------HcCcccCCcEEEEEE
Confidence 873 22444443 334455666666 89998 6666653
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.39 E-value=3.6e-07 Score=75.34 Aligned_cols=88 Identities=23% Similarity=0.284 Sum_probs=65.3
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINL 99 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~ 99 (186)
.+.+....+....++.+|||+.||+|.++..+++. ..+|+|+|+++..++. .+...++.|+.++....
T Consensus 199 ~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~------~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~ 272 (358)
T d1uwva2 199 KMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ------AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEED 272 (358)
T ss_dssp HHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT------SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSC
T ss_pred HHHHHHHHhhccCCCceEEEecccccccchhcccc------ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhh
Confidence 45555555444678899999999999999999987 4799999999999764 23456899999887654
Q ss_pred ChhhHhhhCCCCCCccEEEeCCCC
Q 038391 100 PSNQVRALSPKQKGFSVILSDMCP 123 (186)
Q Consensus 100 ~~~~l~~~~~~~~~~D~V~~d~~~ 123 (186)
.... .....++|+|+.|++.
T Consensus 273 ~~~~----~~~~~~~d~vilDPPR 292 (358)
T d1uwva2 273 VTKQ----PWAKNGFDKVLLDPAR 292 (358)
T ss_dssp CSSS----GGGTTCCSEEEECCCT
T ss_pred hhhh----hhhhccCceEEeCCCC
Confidence 3211 0124679999999863
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.37 E-value=9.7e-08 Score=77.06 Aligned_cols=106 Identities=16% Similarity=0.090 Sum_probs=79.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----------cCCCCCeEEEEeeecCCChhhHhhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----------LHCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----------~~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
+..++||-+|-|.|..+..+.++.+ ..+|+.|||++..++. ...+++++++.+|+...-..
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~----~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~----- 144 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPS----VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK----- 144 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTT----CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT-----
T ss_pred CCcceEEecCCCCcHHHHHHHhcCC----cceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhh-----
Confidence 4568999999999999999998753 3699999999988543 23467899999987653221
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
..++||+|+.|...+........ ...+.+.+.+ .|+|+|.++.+.
T Consensus 145 --~~~~yDvIi~D~~~p~~~~~~L~-------t~eFy~~~~~------------------~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 145 --SENQYDVIMVDSTEPVGPAVNLF-------TKGFYAGIAK------------------ALKEDGIFVAQT 189 (274)
T ss_dssp --CCSCEEEEEESCSSCCSCCCCCS-------TTHHHHHHHH------------------HEEEEEEEEEEC
T ss_pred --cCCCCCEEEEcCCCCCCcchhhc-------cHHHHHHHHh------------------hcCCCceEEEec
Confidence 35789999999753332222222 4478888887 999999999875
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.35 E-value=7.7e-08 Score=78.50 Aligned_cols=106 Identities=17% Similarity=0.127 Sum_probs=76.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----------cCCCCCeEEEEeeecCCChhhHhhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----------LHCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----------~~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
+..++||-+|.|.|..+..+.++.+ ..+|++|||++..++. ...+++++++.+|+...-..
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~----~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~----- 158 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDS----VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK----- 158 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTT----CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG-----
T ss_pred CCCceEEEecCCchHHHHHHHhcCC----CceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhc-----
Confidence 4568999999999999999998753 3689999999988643 12467899999998754322
Q ss_pred CCCCCCccEEEeCCCCCCCCC-cccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 108 SPKQKGFSVILSDMCPSVSGI-TTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
..++||+|++|..-+..+. .... ...+++.+.+ .|+|||.+++..
T Consensus 159 --~~~~yDvIi~D~~dp~~~~~~~L~-------t~efy~~~~~------------------~L~~~Gi~v~q~ 204 (295)
T d1inla_ 159 --FKNEFDVIIIDSTDPTAGQGGHLF-------TEEFYQACYD------------------ALKEDGVFSAET 204 (295)
T ss_dssp --CSSCEEEEEEEC----------CC-------SHHHHHHHHH------------------HEEEEEEEEEEC
T ss_pred --CCCCCCEEEEcCCCCCcCchhhhc-------cHHHHHHHHh------------------hcCCCcEEEEec
Confidence 3578999999864222111 1111 4478888887 999999999875
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=1.5e-07 Score=76.42 Aligned_cols=107 Identities=18% Similarity=0.163 Sum_probs=76.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----------cCCCCCeEEEEeeecCCChhhHhhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----------LHCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----------~~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
+..++||-+|-|.|..+..+.+..+ ..+|+.+||++..++. ...+++++++.+|+...- .+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~----~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l----~~- 147 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPS----VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFM----KQ- 147 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT----CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHH----HT-
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCC----cceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHH----hc-
Confidence 5568999999999999999998743 3699999999988643 234679999999976432 21
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
..++||+|++|...+..... .-....+.+.+.+ .|+|||.++++.-
T Consensus 148 --~~~~yDvIi~D~~~p~~~~~-------~L~t~eF~~~~~~------------------~L~~~Gi~v~q~~ 193 (285)
T d2o07a1 148 --NQDAFDVIITDSSDPMGPAE-------SLFKESYYQLMKT------------------ALKEDGVLCCQGE 193 (285)
T ss_dssp --CSSCEEEEEEECC------------------CHHHHHHHH------------------HEEEEEEEEEEEE
T ss_pred --CCCCCCEEEEcCCCCCCccc-------ccccHHHHHHHHH------------------hcCCCCeEEEecc
Confidence 25689999999742221111 1124477888887 9999999998863
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.24 E-value=1e-06 Score=68.15 Aligned_cols=93 Identities=15% Similarity=0.135 Sum_probs=70.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cC-CCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LH-CDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~-~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
++.+|+|+|+|.|.-+..++-.++ ..+|+.+|.+...+.. .. .-.++++++..+.+.. ...
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p----~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~---------~~~ 131 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRP----EAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP---------SEP 131 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCT----TSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC---------CCS
T ss_pred cCCceeeeeccCCceeeehhhhcc----cceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc---------ccc
Confidence 356999999999999999998764 5899999999988543 11 2247888888776553 245
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
+||+|++.+ ... ....+..+.. +++++|.+++
T Consensus 132 ~fD~V~sRA------~~~---------~~~ll~~~~~------------------~l~~~g~~~~ 163 (207)
T d1jsxa_ 132 PFDGVISRA------FAS---------LNDMVSWCHH------------------LPGEQGRFYA 163 (207)
T ss_dssp CEEEEECSC------SSS---------HHHHHHHHTT------------------SEEEEEEEEE
T ss_pred ccceehhhh------hcC---------HHHHHHHHHH------------------hcCCCcEEEE
Confidence 899999843 222 3467777787 9999999875
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.23 E-value=1.9e-07 Score=76.68 Aligned_cols=106 Identities=17% Similarity=0.201 Sum_probs=73.7
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----------cCCCCCeEEEEeeecCCChhhHhhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----------LHCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----------~~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
+..++||-+|-|.|..+..+.++.+ ..+|+.|||++..+.. ...+++++++.+|....- ..
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~----v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l----~~- 175 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHES----VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFL----KN- 175 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTT----CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHH----HH-
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCC----cceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHH----Hh-
Confidence 4567999999999999999998743 3689999999988542 234578999988876532 22
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
..++||+|++|...+..... .-....+++.+.+ .|+|||.++.+.
T Consensus 176 --~~~~yDvII~D~~dp~~~~~-------~L~t~eFy~~~~~------------------~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 176 --HKNEFDVIITDSSDPVGPAE-------SLFGQSYYELLRD------------------ALKEDGILSSQG 220 (312)
T ss_dssp --CTTCEEEEEECCC--------------------HHHHHHH------------------HEEEEEEEEEEC
T ss_pred --CCCCCCEEEEcCCCCCCcch-------hhhhHHHHHHHHh------------------hcCCCcEEEEec
Confidence 25789999999753221111 1225578888888 999999999874
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.22 E-value=3.5e-07 Score=77.53 Aligned_cols=128 Identities=19% Similarity=0.203 Sum_probs=76.6
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCC---------CeEEEEeCCCCCCCC-------cC-CCCCe
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG---------GSVVGIDVKKVKVPS-------LH-CDARV 89 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~---------~~v~gvDis~~~i~~-------~~-~~~~~ 89 (186)
+.++........++.+|+|.+||+|+++..+.+++...+.. ..++|+|+++.+... +. .....
T Consensus 150 Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~ 229 (425)
T d2okca1 150 LIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 229 (425)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred hhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccc
Confidence 34433333335678899999999999999998876532111 259999999877322 11 11234
Q ss_pred EEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccch------HHHHHHHHHHHHHHcCCcccCCCCCCCCCC
Q 038391 90 QTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDA------ALSVELGMRAVDLALGPAALASPVNNSDSS 163 (186)
Q Consensus 90 ~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (186)
.+...|..... +..+||+|++|+|........... ......-..++..+..
T Consensus 230 ~i~~~d~l~~~---------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~-------------- 286 (425)
T d2okca1 230 PIVCEDSLEKE---------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMML-------------- 286 (425)
T ss_dssp SEEECCTTTSC---------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHH--------------
T ss_pred eeecCchhhhh---------cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHH--------------
Confidence 55566654322 356899999998753221110000 0000112246666666
Q ss_pred CCCcccccCcEEEEEEcc
Q 038391 164 TDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 164 ~~~~~LkpgG~lvi~~~~ 181 (186)
.|++||++++.+-+
T Consensus 287 ----~Lk~~G~~~iI~p~ 300 (425)
T d2okca1 287 ----MLKTGGRAAVVLPD 300 (425)
T ss_dssp ----HEEEEEEEEEEEEH
T ss_pred ----hcCCCCeEEEEech
Confidence 99999998887654
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.19 E-value=3.7e-07 Score=74.16 Aligned_cols=107 Identities=16% Similarity=0.200 Sum_probs=78.2
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----------cCCCCCeEEEEeeecCCChhhHhhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----------LHCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----------~~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
+..++||=+|-|.|.....+.+..+ ..+|+.|||++..++. ....++++++.+|....- .+.
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~----~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l----~~~ 150 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHAS----IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFL----KNA 150 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTT----CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHH----HTS
T ss_pred CCCcceEEecCCchHHHHHHHhccc----ceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHH----hhc
Confidence 4567999999999999999998753 3689999999988643 234678999999876432 221
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
..++||+|+.|..-+....... ....+++.+.+ .|+|||.++++.
T Consensus 151 --~~~~yDvIi~D~~dp~~~~~~L-------~t~eF~~~~~~------------------~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 151 --AEGSYDAVIVDSSDPIGPAKEL-------FEKPFFQSVAR------------------ALRPGGVVCTQA 195 (290)
T ss_dssp --CTTCEEEEEECCCCTTSGGGGG-------GSHHHHHHHHH------------------HEEEEEEEEEEC
T ss_pred --cccCccEEEEcCCCCCCcchhh-------CCHHHHHHHHH------------------hcCCCcEEEEec
Confidence 2468999999975322211111 14577888887 999999999986
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.07 E-value=1e-06 Score=70.13 Aligned_cols=79 Identities=6% Similarity=0.082 Sum_probs=59.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
+.+++.||++|||+|.+|..+++. +.+|++||+++.+++. .....+++++.+|+.......+.... +
T Consensus 19 ~~~~d~vlEIGpG~G~LT~~Ll~~------~~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~~~~~~~~---~ 89 (252)
T d1qyra_ 19 PQKGQAMVEIGPGLAALTEPVGER------LDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKM---G 89 (252)
T ss_dssp CCTTCCEEEECCTTTTTHHHHHTT------CSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHHHH---T
T ss_pred CCCCCEEEEECCCchHHHHHHHcc------CCceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhccccccccc---C
Confidence 577899999999999999999987 4799999999988543 22346899999999987655433221 2
Q ss_pred CccEEEeCCCCC
Q 038391 113 GFSVILSDMCPS 124 (186)
Q Consensus 113 ~~D~V~~d~~~~ 124 (186)
+.-.|+.|.+.+
T Consensus 90 ~~~~vvgNlPY~ 101 (252)
T d1qyra_ 90 QPLRVFGNLPYN 101 (252)
T ss_dssp SCEEEEEECCTT
T ss_pred CCeEEEecchHH
Confidence 334677877643
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=2.7e-06 Score=68.57 Aligned_cols=71 Identities=17% Similarity=0.265 Sum_probs=56.4
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
.+.++..||++|+|+|.+|..+++. +.+|++||+++.++.. .....+++++.+|+.....
T Consensus 18 ~~~~~d~VlEIGPG~G~LT~~Ll~~------~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~------- 84 (278)
T d1zq9a1 18 ALRPTDVVLEVGPGTGNMTVKLLEK------AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL------- 84 (278)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHHHH------SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC-------
T ss_pred CCCCCCEEEEECCCchHHHHHHHhc------CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh-------
Confidence 3678899999999999999999998 4799999999988543 2234689999999876542
Q ss_pred CCCCCccEEEeCCC
Q 038391 109 PKQKGFSVILSDMC 122 (186)
Q Consensus 109 ~~~~~~D~V~~d~~ 122 (186)
..+..|+.|.+
T Consensus 85 ---~~~~~vV~NLP 95 (278)
T d1zq9a1 85 ---PFFDTCVANLP 95 (278)
T ss_dssp ---CCCSEEEEECC
T ss_pred ---hhhhhhhcchH
Confidence 24567888875
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.94 E-value=3.8e-06 Score=72.92 Aligned_cols=130 Identities=10% Similarity=0.089 Sum_probs=72.3
Q ss_pred HHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCC--------------CeEEEEeCCCCCCCC-------cCC-
Q 038391 28 LQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG--------------GSVVGIDVKKVKVPS-------LHC- 85 (186)
Q Consensus 28 ~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~--------------~~v~gvDis~~~i~~-------~~~- 85 (186)
.++........++.+|+|-+||+|+++..+.+++...... ..++|+|+++.+... +..
T Consensus 153 v~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~ 232 (524)
T d2ar0a1 153 IKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE 232 (524)
T ss_dssp HHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC
T ss_pred hHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhccc
Confidence 3333333335678899999999999999888776432111 258999999866321 111
Q ss_pred ---CCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccc---hHHHHHHHHHHHHHHcCCcccCCCCCC
Q 038391 86 ---DARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKD---AALSVELGMRAVDLALGPAALASPVNN 159 (186)
Q Consensus 86 ---~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (186)
...-.+...+....... ...+||+|++|+|.......... .......-..++..+.+
T Consensus 233 ~~i~~~~~~~~~~~l~~d~~-------~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~---------- 295 (524)
T d2ar0a1 233 GNLDHGGAIRLGNTLGSDGE-------NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIE---------- 295 (524)
T ss_dssp CBGGGTBSEEESCTTSHHHH-------TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHH----------
T ss_pred ccccccchhhhhhhhhhccc-------ccccceeEEecCCccccccccchhhhccccccccHHHHHHHHH----------
Confidence 11122333332221111 24689999999875321111000 00000011246666776
Q ss_pred CCCCCCCcccccCcEEEEEEccC
Q 038391 160 SDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 160 ~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
.|+|||++++.+-+|
T Consensus 296 --------~Lk~gGr~aiIlP~~ 310 (524)
T d2ar0a1 296 --------TLHPGGRAAVVVPDN 310 (524)
T ss_dssp --------HEEEEEEEEEEEEHH
T ss_pred --------hccccCcEEEEEehH
Confidence 999999999876543
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.69 E-value=1.8e-05 Score=62.24 Aligned_cols=97 Identities=10% Similarity=0.073 Sum_probs=68.7
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
++.+++|+|+|.|.-+..++=.++ ..+|+-+|-+...+.. .-.-.++.+++..+.+.... .....
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p----~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~-----~~~~~ 140 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFP----HLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR-----KDVRE 140 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCT----TCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC-----TTTTT
T ss_pred CCCeEEeecCCCchHHHHHHHhCC----CccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhcccc-----ccccc
Confidence 567999999999999999988765 5899999999887543 11224677777655433211 00246
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
+||+|++.+ ... ....+..+.. ++++||.+++
T Consensus 141 ~~D~v~sRA------va~---------l~~ll~~~~~------------------~l~~~g~~i~ 172 (239)
T d1xdza_ 141 SYDIVTARA------VAR---------LSVLSELCLP------------------LVKKNGLFVA 172 (239)
T ss_dssp CEEEEEEEC------CSC---------HHHHHHHHGG------------------GEEEEEEEEE
T ss_pred cceEEEEhh------hhC---------HHHHHHHHhh------------------hcccCCEEEE
Confidence 899999943 232 4467777787 9999998775
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.61 E-value=1.8e-05 Score=57.94 Aligned_cols=105 Identities=23% Similarity=0.350 Sum_probs=65.5
Q ss_pred CCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-CCCCeEEEEeeecCCCh----hhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-CDARVQTVSADVINLPS----NQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-~~~~~~~~~~d~~~~~~----~~l~~~~~~ 110 (186)
+++|++||-+|||+ |.++..+++.+ +.+|+++|.++.+++... ......+. .+-..... ..+.+. .
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~-----Ga~vi~v~~~~~r~~~a~~~ga~~~~~-~~~~~~~~~~~~~~~~~~--~ 95 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAY-----GAFVVCTARSPRRLEVAKNCGADVTLV-VDPAKEEESSIIERIRSA--I 95 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-----TCEEEEEESCHHHHHHHHHTTCSEEEE-CCTTTSCHHHHHHHHHHH--S
T ss_pred CCCCCEEEEEcccccchhhHhhHhhh-----cccccccchHHHHHHHHHHcCCcEEEe-ccccccccchhhhhhhcc--c
Confidence 78999999999986 66777777775 579999999998865432 22222222 22111111 122222 2
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
+..+|+|+-. .+. ...+..+.+ +|+|+|++++--+..+.
T Consensus 96 g~g~D~vid~-----~g~------------~~~~~~a~~------------------~~~~~G~iv~~G~~~~~ 134 (170)
T d1e3ja2 96 GDLPNVTIDC-----SGN------------EKCITIGIN------------------ITRTGGTLMLVGMGSQM 134 (170)
T ss_dssp SSCCSEEEEC-----SCC------------HHHHHHHHH------------------HSCTTCEEEECSCCSSC
T ss_pred ccCCceeeec-----CCC------------hHHHHHHHH------------------HHhcCCceEEEecCCCC
Confidence 4689999862 221 135555666 89999999987666543
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=97.53 E-value=4.1e-05 Score=56.96 Aligned_cols=110 Identities=17% Similarity=0.283 Sum_probs=69.7
Q ss_pred cCCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 34 YKLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 34 ~~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
...+++|++||-+|||+ |..+..+++.++. ..|+.+|.++.+++.++...-..++...-.+.....+.... .++
T Consensus 23 ~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga----~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~-~~~ 97 (174)
T d1e3ia2 23 TAKVTPGSTCAVFGLGCVGLSAIIGCKIAGA----SRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITEL-TAG 97 (174)
T ss_dssp TSCCCTTCEEEEECCSHHHHHHHHHHHHTTC----SEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHH-HTS
T ss_pred hhCCCCCCEEEEECCChHHHHHHHHHHHhCC----ceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhh-hcC
Confidence 34478999999999998 7788888888742 58999999999865533322222222111111222222222 256
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccC-cEEEEEEccCC
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPG-GHLVIKLLESQ 183 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lkpg-G~lvi~~~~~~ 183 (186)
.+|+++- +.| ....+..+.+ .|++| |++++--+.++
T Consensus 98 G~d~vie-----~~G------------~~~~~~~a~~------------------~~~~g~G~~v~vG~~~~ 134 (174)
T d1e3ia2 98 GVDYSLD-----CAG------------TAQTLKAAVD------------------CTVLGWGSCTVVGAKVD 134 (174)
T ss_dssp CBSEEEE-----SSC------------CHHHHHHHHH------------------TBCTTTCEEEECCCSSS
T ss_pred CCcEEEE-----ecc------------cchHHHHHHH------------------HhhcCCeEEEecCCCCC
Confidence 8999987 233 2245666666 88996 99998766554
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.47 E-value=3.1e-05 Score=57.53 Aligned_cols=111 Identities=20% Similarity=0.248 Sum_probs=68.3
Q ss_pred HHHHHcCCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh----hh
Q 038391 29 QIQKQYKLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS----NQ 103 (186)
Q Consensus 29 ~~~~~~~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~----~~ 103 (186)
..+.....+++|++||-+|||+ |.+...+++.++. .+|+++|.++.+++......-..++ |..+... ..
T Consensus 18 ~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga----~~Vi~~~~~~~~~~~a~~lGa~~vi--~~~~~~~~~~~~~ 91 (182)
T d1vj0a2 18 HAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGA----ENVIVIAGSPNRLKLAEEIGADLTL--NRRETSVEERRKA 91 (182)
T ss_dssp HHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTB----SEEEEEESCHHHHHHHHHTTCSEEE--ETTTSCHHHHHHH
T ss_pred HHHHHHhCCCCCCEEEEECCCccchhheeccccccc----ccccccccccccccccccccceEEE--eccccchHHHHHH
Confidence 3444555578999999999986 7777888887642 4899999999886543221111222 3333221 12
Q ss_pred HhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 104 VRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 104 l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+.++. .+..+|+|+. +.|.. ..++.+.+ .|++||++++--+.
T Consensus 92 i~~~~-~~~g~Dvvid-----~vG~~------------~~~~~a~~------------------~l~~~G~iv~~G~~ 133 (182)
T d1vj0a2 92 IMDIT-HGRGADFILE-----ATGDS------------RALLEGSE------------------LLRRGGFYSVAGVA 133 (182)
T ss_dssp HHHHT-TTSCEEEEEE-----CSSCT------------THHHHHHH------------------HEEEEEEEEECCCC
T ss_pred HHHhh-CCCCceEEee-----cCCch------------hHHHHHHH------------------HhcCCCEEEEEeec
Confidence 33343 3567999986 22221 23444455 89999999876543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.41 E-value=4e-05 Score=56.29 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=34.8
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.+++|++||-+|+|+ |.++..+++.+ +.+|+++|.++.+++.
T Consensus 24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~-----G~~vi~~~~~~~k~~~ 66 (168)
T d1piwa2 24 GCGPGKKVGIVGLGGIGSMGTLISKAM-----GAETYVISRSSRKRED 66 (168)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHH-----TCEEEEEESSSTTHHH
T ss_pred CcCCCCEEEEECCCCcchhHHHHhhhc-----cccccccccchhHHHH
Confidence 478999999999984 66777777776 5799999999998765
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.39 E-value=3.4e-05 Score=56.69 Aligned_cols=107 Identities=18% Similarity=0.223 Sum_probs=64.7
Q ss_pred CCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCC--hhhHhhhCCCCCC
Q 038391 37 IKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLP--SNQVRALSPKQKG 113 (186)
Q Consensus 37 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~--~~~l~~~~~~~~~ 113 (186)
+++|++||=+|||+ |..+..+++.++ ..+|+++|.++..++.++...--.++..+-.+.. ...+... .+..
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G----~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~--~g~g 97 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMG----AAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQ--LGCK 97 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT----CSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHH--HTSC
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcC----CceEEeccCCHHHHHHHHHhCCccccccccccccccccccccc--CCCC
Confidence 68999999999988 556666667663 2489999999988665322111111111111110 1111111 2468
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
+|+|+. ..|. ...++.+.. .+++||++++--+.++.
T Consensus 98 ~Dvvid-----~~G~------------~~~~~~a~~------------------~~~~gG~iv~~G~~~~~ 133 (171)
T d1pl8a2 98 PEVTIE-----CTGA------------EASIQAGIY------------------ATRSGGTLVLVGLGSEM 133 (171)
T ss_dssp CSEEEE-----CSCC------------HHHHHHHHH------------------HSCTTCEEEECSCCCSC
T ss_pred ceEEEe-----ccCC------------chhHHHHHH------------------HhcCCCEEEEEecCCCC
Confidence 999987 2221 135556666 89999999988776654
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.34 E-value=1.9e-05 Score=58.77 Aligned_cols=105 Identities=22% Similarity=0.320 Sum_probs=67.2
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCC-hhhHhhhCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLP-SNQVRALSPKQKG 113 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~-~~~l~~~~~~~~~ 113 (186)
.+++|++||-+|||+ |..+..+++.++. .+|+++|.++.+++.+....-..++ |..+.. ...+.+.+ .+..
T Consensus 24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga----~~Vi~~d~~~~r~~~a~~lGa~~~i--~~~~~~~~~~v~~~t-~g~G 96 (174)
T d1jqba2 24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGA----GRIIGVGSRPICVEAAKFYGATDIL--NYKNGHIEDQVMKLT-NGKG 96 (174)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHTTTC----SCEEEECCCHHHHHHHHHHTCSEEE--CGGGSCHHHHHHHHT-TTSC
T ss_pred CCCCCCEEEEEcCCcchhhhhhhhhcccc----cccccccchhhhHHHHHhhCccccc--cccchhHHHHHHHHh-hccC
Confidence 478999999999987 7778888887642 4899999999876543211111222 222222 23445554 3567
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
+|+|+-. .+.. ..++.+.+ .|+|+|++++.-+.+
T Consensus 97 ~D~vid~-----~g~~------------~~~~~a~~------------------~~~~~G~iv~~G~~~ 130 (174)
T d1jqba2 97 VDRVIMA-----GGGS------------ETLSQAVK------------------MVKPGGIISNINYHG 130 (174)
T ss_dssp EEEEEEC-----SSCT------------THHHHHHH------------------HEEEEEEEEECCCCC
T ss_pred cceEEEc-----cCCH------------HHHHHHHH------------------HHhcCCEEEEEeecC
Confidence 9999872 2221 23444455 899999999876544
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=97.16 E-value=0.00051 Score=50.60 Aligned_cols=79 Identities=18% Similarity=0.276 Sum_probs=48.5
Q ss_pred cCCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCC--hhhHhhhCCC
Q 038391 34 YKLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLP--SNQVRALSPK 110 (186)
Q Consensus 34 ~~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~--~~~l~~~~~~ 110 (186)
...+++|++||-+|||+ |.....+++.++ ..+|+++|.++.+++.+....-..++ |..+.. ........ .
T Consensus 22 ~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G----~~~Vi~~d~~~~kl~~a~~lGa~~~i--~~~~~d~~~~~~~~~~-~ 94 (174)
T d1p0fa2 22 TAKVTPGSTCAVFGLGGVGFSAIVGCKAAG----ASRIIGVGTHKDKFPKAIELGATECL--NPKDYDKPIYEVICEK-T 94 (174)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHHT----CSEEEEECSCGGGHHHHHHTTCSEEE--CGGGCSSCHHHHHHHH-T
T ss_pred hhCCCCCCEEEEECCCchhHHHHHHHHHcC----CceeeccCChHHHHHHHHHcCCcEEE--cCCCchhHHHHHHHHh-c
Confidence 34589999999999997 455566677764 36899999999987653322222222 222211 12221222 2
Q ss_pred CCCccEEEe
Q 038391 111 QKGFSVILS 119 (186)
Q Consensus 111 ~~~~D~V~~ 119 (186)
++.+|+|+-
T Consensus 95 ~~G~d~vid 103 (174)
T d1p0fa2 95 NGGVDYAVE 103 (174)
T ss_dssp TSCBSEEEE
T ss_pred CCCCcEEEE
Confidence 468999987
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.16 E-value=4.6e-05 Score=60.24 Aligned_cols=70 Identities=17% Similarity=0.087 Sum_probs=52.8
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC-------CcC--------CCCCeEEEEeeecCCChhhHh
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP-------SLH--------CDARVQTVSADVINLPSNQVR 105 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~-------~~~--------~~~~~~~~~~d~~~~~~~~l~ 105 (186)
.+|||..||.|..+..++.. +++|+++|-++.... ... ...+++++++|..+....
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~------G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~--- 160 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASV------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD--- 160 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHH------TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT---
T ss_pred CEEEECCCcccHHHHHHHhC------CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhc---
Confidence 48999999999999999987 689999999996621 111 123789999986553221
Q ss_pred hhCCCCCCccEEEeCCCC
Q 038391 106 ALSPKQKGFSVILSDMCP 123 (186)
Q Consensus 106 ~~~~~~~~~D~V~~d~~~ 123 (186)
...+||+|+.|+.+
T Consensus 161 ----~~~~~DvIYlDPMF 174 (250)
T d2oyra1 161 ----ITPRPQVVYLDPMF 174 (250)
T ss_dssp ----CSSCCSEEEECCCC
T ss_pred ----cCCCCCEEEECCCC
Confidence 24679999999764
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.15 E-value=0.00012 Score=60.88 Aligned_cols=97 Identities=21% Similarity=0.084 Sum_probs=64.5
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCC--------------CCCeEEEEeeec
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHC--------------DARVQTVSADVI 97 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~--------------~~~~~~~~~d~~ 97 (186)
++.+|||..||+|..++..+...+ ..+|+++|+++..++. +.. ...+.+.+.|+.
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~----~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~ 120 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETP----AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDAN 120 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSS----CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCC----CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhh
Confidence 467999999999999998777654 3589999999988543 110 112334444442
Q ss_pred CCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 98 NLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 98 ~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
..-.. .+..||+|..|+ -| .. ..+++.+.+ .++.||.|.+
T Consensus 121 ~~~~~-------~~~~fDvIDiDP----fG--s~---------~pfldsAi~------------------a~~~~Gll~v 160 (375)
T d2dula1 121 RLMAE-------RHRYFHFIDLDP----FG--SP---------MEFLDTALR------------------SAKRRGILGV 160 (375)
T ss_dssp HHHHH-------STTCEEEEEECC----SS--CC---------HHHHHHHHH------------------HEEEEEEEEE
T ss_pred hhhHh-------hcCcCCcccCCC----CC--Cc---------HHHHHHHHH------------------HhccCCEEEE
Confidence 22111 256899999986 12 11 246666776 8899999998
Q ss_pred EE
Q 038391 178 KL 179 (186)
Q Consensus 178 ~~ 179 (186)
+.
T Consensus 161 Ta 162 (375)
T d2dula1 161 TA 162 (375)
T ss_dssp EE
T ss_pred Ee
Confidence 73
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=97.13 E-value=0.00032 Score=51.33 Aligned_cols=106 Identities=24% Similarity=0.267 Sum_probs=66.4
Q ss_pred cCCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 34 YKLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 34 ~~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
...+++|++||-+|||+ |.++..+++.++ ..+|+++|.++.++.......-..++ |..+.......+.. .+.
T Consensus 27 ~~~~~~g~~vli~GaG~vG~~~~~~a~~~g----~~~vv~~~~~~~k~~~~~~~ga~~~i--~~~~~~~~~~~~~~-~~~ 99 (172)
T d1h2ba2 27 ARTLYPGAYVAIVGVGGLGHIAVQLLKVMT----PATVIALDVKEEKLKLAERLGADHVV--DARRDPVKQVMELT-RGR 99 (172)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHHC----CCEEEEEESSHHHHHHHHHTTCSEEE--ETTSCHHHHHHHHT-TTC
T ss_pred hhccCCCCEEEEeCCChHHHHHHHHHHhhc----CcccccccchhHHHHHHhhcccceee--cCcccHHHHHHHhh-CCC
Confidence 33478999999999987 455567777764 36899999999775543222222233 22222222233333 246
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
.+|+|+.. .+ ....++.+.. .|+++|++++--+.
T Consensus 100 g~d~vid~-----~g------------~~~~~~~a~~------------------~l~~~G~iv~~G~~ 133 (172)
T d1h2ba2 100 GVNVAMDF-----VG------------SQATVDYTPY------------------LLGRMGRLIIVGYG 133 (172)
T ss_dssp CEEEEEES-----SC------------CHHHHHHGGG------------------GEEEEEEEEECCCS
T ss_pred CceEEEEe-----cC------------cchHHHHHHH------------------HHhCCCEEEEEeCc
Confidence 79999872 22 1245666776 99999999986653
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.10 E-value=5e-05 Score=57.49 Aligned_cols=118 Identities=18% Similarity=0.236 Sum_probs=68.6
Q ss_pred CCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCC-hhhHhhhCCCCC
Q 038391 35 KLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLP-SNQVRALSPKQK 112 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~-~~~l~~~~~~~~ 112 (186)
..+++|++||.+|||+ |..+..+++..+ ..+|+++|.++.+++.+.... ...+ .+-.+.+ ...+.+++ .+.
T Consensus 21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~g----a~~Vi~~d~~~~rl~~a~~~G-a~~~-~~~~~~~~~~~i~~~t-~g~ 93 (195)
T d1kola2 21 AGVGPGSTVYVAGAGPVGLAAAASARLLG----AAVVIVGDLNPARLAHAKAQG-FEIA-DLSLDTPLHEQIAALL-GEP 93 (195)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTT----CSEEEEEESCHHHHHHHHHTT-CEEE-ETTSSSCHHHHHHHHH-SSS
T ss_pred hCCCCCCEEEEECcCHHHHHHHHHHHhhc----ccceeeecccchhhHhhhhcc-ccEE-EeCCCcCHHHHHHHHh-CCC
Confidence 3589999999999998 556666677664 369999999998866533222 1111 1212222 12334443 356
Q ss_pred CccEEEeCCCCCCC--CCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 113 GFSVILSDMCPSVS--GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 113 ~~D~V~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
.+|+++-.-..... ..+.... ......++.+.+ .++|||++++.-+.
T Consensus 94 g~D~vid~vG~~~~~~~~~~~~~----~~~~~~l~~~~~------------------~~r~gG~v~~~G~~ 142 (195)
T d1kola2 94 EVDCAVDAVGFEARGHGHEGAKH----EAPATVLNSLMQ------------------VTRVAGKIGIPGLY 142 (195)
T ss_dssp CEEEEEECCCTTCBCSSTTGGGS----BCTTHHHHHHHH------------------HEEEEEEEEECSCC
T ss_pred CcEEEEECccccccCCcccceee----cCcHHHHHHHHH------------------HHhcCCEEEEeeec
Confidence 89999863221111 0111000 002246666776 99999999987543
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.94 E-value=0.0002 Score=51.98 Aligned_cols=41 Identities=24% Similarity=0.308 Sum_probs=33.4
Q ss_pred CCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 37 IKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 37 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
+++|++||-+|||+ |..+..+++.+ +.+|+++|.++..++.
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~-----G~~Vi~~~~~~~~~~~ 66 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAM-----GLHVAAIDIDDAKLEL 66 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-----TCEEEEEESCHHHHHH
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHc-----CCccceecchhhHHHh
Confidence 78999999999987 66667777775 4799999999887654
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.92 E-value=0.00037 Score=51.16 Aligned_cols=103 Identities=13% Similarity=0.236 Sum_probs=64.0
Q ss_pred CCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCC-hhhHhhhCCCCC
Q 038391 35 KLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLP-SNQVRALSPKQK 112 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~-~~~l~~~~~~~~ 112 (186)
..+++|++||=+|||+ |..+..+++.++ ...|+.+|.++..++..+...-..++ |..+.. ...+.++. ++
T Consensus 24 ~~~~~g~~VlI~G~G~iG~~~~~~ak~~g----~~~v~~~~~~~~k~~~a~~~Ga~~~i--~~~~~~~~~~i~~~t--~g 95 (174)
T d1f8fa2 24 LKVTPASSFVTWGAGAVGLSALLAAKVCG----ASIIIAVDIVESRLELAKQLGATHVI--NSKTQDPVAAIKEIT--DG 95 (174)
T ss_dssp TCCCTTCEEEEESCSHHHHHHHHHHHHHT----CSEEEEEESCHHHHHHHHHHTCSEEE--ETTTSCHHHHHHHHT--TS
T ss_pred hCCCCCCEEEEeCCCHHHhhhhhcccccc----cceeeeeccHHHHHHHHHHcCCeEEE--eCCCcCHHHHHHHHc--CC
Confidence 3478999999999986 456666777764 35788899999776543221112233 222222 23444553 35
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
.+|+|+-. .+ ....++.+.+ +++|+|++++--.
T Consensus 96 g~D~vid~-----~G------------~~~~~~~~~~------------------~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 96 GVNFALES-----TG------------SPEILKQGVD------------------ALGILGKIAVVGA 128 (174)
T ss_dssp CEEEEEEC-----SC------------CHHHHHHHHH------------------TEEEEEEEEECCC
T ss_pred CCcEEEEc-----CC------------cHHHHHHHHh------------------cccCceEEEEEee
Confidence 89999862 22 1235555665 8999999987644
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.75 E-value=0.00024 Score=51.71 Aligned_cols=108 Identities=16% Similarity=0.296 Sum_probs=65.8
Q ss_pred CCCCCCEEEEEcc-cC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCC-hhhHhhhCCCCC
Q 038391 36 LIKPGSSVLDLGC-AP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLP-SNQVRALSPKQK 112 (186)
Q Consensus 36 ~~~~~~~vLDlGc-G~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~-~~~l~~~~~~~~ 112 (186)
.++++++||=+|| |+ |..+..+++.++ ..+|+++|.++..+.......-..++ |..+.. ...+.+.. .++
T Consensus 24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g----~~~V~~~~~~~~~~~~~~~~Ga~~~i--~~~~~~~~~~~~~~~-~~~ 96 (170)
T d1jvba2 24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVS----GATIIGVDVREEAVEAAKRAGADYVI--NASMQDPLAEIRRIT-ESK 96 (170)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHHT----CCEEEEEESSHHHHHHHHHHTCSEEE--ETTTSCHHHHHHHHT-TTS
T ss_pred CCCCCCEEEEEeccccceeeeeecccccc----cccccccccchhhHHHHHHcCCceee--ccCCcCHHHHHHHHh-hcc
Confidence 3789999999997 43 556666777664 36999999998775542211101222 222222 12233333 356
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCCC
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDA 185 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~ 185 (186)
.||+|+.. .+ ....++.+.+ .|+|||++++--+.+++.
T Consensus 97 ~~d~vid~-----~g------------~~~~~~~a~~------------------~l~~~G~iv~~G~~~~~~ 134 (170)
T d1jvba2 97 GVDAVIDL-----NN------------SEKTLSVYPK------------------ALAKQGKYVMVGLFGADL 134 (170)
T ss_dssp CEEEEEES-----CC------------CHHHHTTGGG------------------GEEEEEEEEECCSSCCCC
T ss_pred cchhhhcc-----cc------------cchHHHhhhh------------------hcccCCEEEEeccccCcc
Confidence 79999872 22 1234455565 999999999887776654
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.73 E-value=0.0014 Score=48.32 Aligned_cols=80 Identities=21% Similarity=0.345 Sum_probs=47.6
Q ss_pred CCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 35 KLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
..+++|+.||=+|||+ |.....+++.++ ..+|+++|.++++++.+....-..++...-.+.....+.... .+..
T Consensus 25 ~~~~~g~tVlI~G~GgvGl~ai~~ak~~G----~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~-~g~G 99 (176)
T d1d1ta2 25 GKVKPGSTCVVFGLGGVGLSVIMGCKSAG----ASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEM-TGNN 99 (176)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHTT----CSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHH-HTSC
T ss_pred hCCCCCCEEEEECCCchhHHHHHHHHHcC----CceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHh-cccc
Confidence 3478999999999997 445566666663 369999999999976633221122221111111122222222 2568
Q ss_pred ccEEEe
Q 038391 114 FSVILS 119 (186)
Q Consensus 114 ~D~V~~ 119 (186)
+|+++-
T Consensus 100 ~d~vi~ 105 (176)
T d1d1ta2 100 VGYTFE 105 (176)
T ss_dssp CCEEEE
T ss_pred ceEEEE
Confidence 998887
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=96.72 E-value=0.0014 Score=51.52 Aligned_cols=94 Identities=10% Similarity=0.035 Sum_probs=59.6
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeC
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d 120 (186)
+||||.||.|++..-+-+. |. .++++|+.+...+.....-.-..+.+|+.++....+ ..+|+++..
T Consensus 2 k~~~lF~G~Gg~~~gl~~a------G~~~~~a~e~d~~a~~~~~~N~~~~~~~~Di~~~~~~~~-------~~~dll~~g 68 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKA------GFRIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEF-------PKCDGIIGG 68 (324)
T ss_dssp EEEEESCSSCHHHHHHHHH------TCEEEEEEECCHHHHHHHHHHCCSEEEESCTTTSCGGGS-------CCCSEEEEC
T ss_pred eEEEeCcCcCHHHHHHHHC------CCEEEEEEeCCHHHHHHHHHHCCCCCccCChhhCCHhHc-------ccccEEeec
Confidence 6999999999999888775 34 467999999876541111123567789888765432 468999998
Q ss_pred CCCCC---CCCcccchHHHHHHHHHHHHHHc
Q 038391 121 MCPSV---SGITTKDAALSVELGMRAVDLAL 148 (186)
Q Consensus 121 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 148 (186)
.+|.. .|...........+....++...
T Consensus 69 ~PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~ 99 (324)
T d1dcta_ 69 PPCQSWSEGGSLRGIDDPRGKLFYEYIRILK 99 (324)
T ss_dssp CCCTTTSSSSCCCCSSSHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccchHHHHHHHHH
Confidence 76632 22222222233345555555555
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.60 E-value=0.00085 Score=48.96 Aligned_cols=77 Identities=16% Similarity=0.218 Sum_probs=47.1
Q ss_pred CCCCCCCEEEEEcc-c-CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh-hhHhhhCCCC
Q 038391 35 KLIKPGSSVLDLGC-A-PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQ 111 (186)
Q Consensus 35 ~~~~~~~~vLDlGc-G-~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~-~~l~~~~~~~ 111 (186)
..+++|++||-.|+ | .|..+..+++.+ +.+|++++-+++..+......--.+ .|..+... +.+.... .+
T Consensus 24 ~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~-----G~~vi~~~~~~~~~~~~~~~Ga~~v--i~~~~~~~~~~i~~~t-~~ 95 (174)
T d1yb5a2 24 ACVKAGESVLVHGASGGVGLAACQIARAY-----GLKILGTAGTEEGQKIVLQNGAHEV--FNHREVNYIDKIKKYV-GE 95 (174)
T ss_dssp SCCCTTCEEEEETCSSHHHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHHTTCSEE--EETTSTTHHHHHHHHH-CT
T ss_pred hCCCCCCEEEEEecccccccccccccccc-----CcccccccccccccccccccCcccc--cccccccHHHHhhhhh-cc
Confidence 34789999999997 3 366777777776 5799999988766443211111112 23333332 2333333 36
Q ss_pred CCccEEEe
Q 038391 112 KGFSVILS 119 (186)
Q Consensus 112 ~~~D~V~~ 119 (186)
+.+|+|+.
T Consensus 96 ~g~d~v~d 103 (174)
T d1yb5a2 96 KGIDIIIE 103 (174)
T ss_dssp TCEEEEEE
T ss_pred CCceEEee
Confidence 78999997
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.26 E-value=0.00039 Score=50.66 Aligned_cols=42 Identities=21% Similarity=0.262 Sum_probs=33.2
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.+++|++||=+|||+ |.+...+++.+ +.+++++|.++...+.
T Consensus 27 ~~~~G~~VlI~GaG~vG~~a~qlak~~-----Ga~~i~~~~~~~~~~~ 69 (168)
T d1uufa2 27 QAGPGKKVGVVGIGGLGHMGIKLAHAM-----GAHVVAFTTSEAKREA 69 (168)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT-----TCEEEEEESSGGGHHH
T ss_pred CCCCCCEEEEeccchHHHHHHHHhhcc-----cccchhhccchhHHHH
Confidence 478999999999876 66777777776 5788899998887543
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.24 E-value=0.0012 Score=53.51 Aligned_cols=57 Identities=14% Similarity=0.047 Sum_probs=44.8
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC---cCCCCCeEEEEeeecCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS---LHCDARVQTVSADVINL 99 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~---~~~~~~~~~~~~d~~~~ 99 (186)
+...|||+|+|+|.+|..+....++ .+|+++|+++..... .....+++++++|+...
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~----~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~~ 102 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCP----RQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDW 102 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCC----SEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCH
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCC----CEEEEEECCHHHHHHHHHhccCCCcEEEeCchhhc
Confidence 4678999999999999999987532 489999999987433 23356789999988654
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=96.04 E-value=0.0088 Score=43.24 Aligned_cols=81 Identities=15% Similarity=0.272 Sum_probs=47.4
Q ss_pred HcCCCCCCCEEEEEcccCCh-HHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEe-eecCCChhhHhhhCCC
Q 038391 33 QYKLIKPGSSVLDLGCAPGA-WLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSA-DVINLPSNQVRALSPK 110 (186)
Q Consensus 33 ~~~~~~~~~~vLDlGcG~G~-~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~-d~~~~~~~~l~~~~~~ 110 (186)
....+++|++||=+|+|.++ ....+++.++ ..+|+++|.++.+.+......-..++.. +-.+......... .
T Consensus 22 ~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g----~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~--~ 95 (176)
T d2jhfa2 22 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAG----AARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEM--S 95 (176)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTT----CSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHH--T
T ss_pred HhhCCCCCCEEEEECCCCcHHHHHHHHHHcC----CceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHH--h
Confidence 33458999999999997643 5555556653 4799999999998665332222222211 1111111222222 2
Q ss_pred CCCccEEEe
Q 038391 111 QKGFSVILS 119 (186)
Q Consensus 111 ~~~~D~V~~ 119 (186)
++.+|+|+-
T Consensus 96 ~~G~D~vid 104 (176)
T d2jhfa2 96 NGGVDFSFE 104 (176)
T ss_dssp TSCBSEEEE
T ss_pred cCCCCEEEe
Confidence 468999987
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.03 E-value=0.0012 Score=47.50 Aligned_cols=41 Identities=24% Similarity=0.239 Sum_probs=31.6
Q ss_pred CCCCCEEEEEcccCC-hHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 37 IKPGSSVLDLGCAPG-AWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G-~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
++++++||-.|||+- .....+++.. +.+|+++|.++..+..
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~~-----g~~v~~~~~~~~r~~~ 66 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKAM-----GLNVVAVDIGDEKLEL 66 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHT-----TCEEEEECSCHHHHHH
T ss_pred CCCCCEEEEeecccchhhhhHHHhcC-----CCeEeccCCCHHHhhh
Confidence 789999999999984 4455555554 5799999999988654
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.01 E-value=0.0053 Score=44.24 Aligned_cols=45 Identities=24% Similarity=0.497 Sum_probs=34.4
Q ss_pred cCCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 34 YKLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 34 ~~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
...+++|++||=.|||. |.++..+++.++ ...|+++|.++..++.
T Consensus 23 ~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G----~~~vi~~~~~~~k~~~ 68 (176)
T d2fzwa2 23 TAKLEPGSVCAVFGLGGVGLAVIMGCKVAG----ASRIIGVDINKDKFAR 68 (176)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHHT----CSEEEEECSCGGGHHH
T ss_pred hhCCCCCCEEEEecchhHHHHHHHHHHHHh----cCceEEEcccHHHHHH
Confidence 34479999999999885 456666777774 3689999999988654
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=95.69 E-value=0.0094 Score=42.91 Aligned_cols=81 Identities=19% Similarity=0.267 Sum_probs=47.4
Q ss_pred cCCCCCCCEEEEEcccCChHH-HHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 34 YKLIKPGSSVLDLGCAPGAWL-QVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 34 ~~~~~~~~~vLDlGcG~G~~~-~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
...+++|++||=+|||+++.. ..++...+ +..|+++|.++++++......-..++..+-.+.......... .++
T Consensus 23 ~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g----~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~-~~~ 97 (175)
T d1cdoa2 23 TAKVEPGSTCAVFGLGAVGLAAVMGCHSAG----AKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKM-TNG 97 (175)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHTT----CSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHH-HTS
T ss_pred hhCCCCCCEEEEEecCCccchHHHHHHHHh----hchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhh-ccC
Confidence 344899999999999995544 44555543 468999999999876533322222332111111112222222 246
Q ss_pred CccEEEe
Q 038391 113 GFSVILS 119 (186)
Q Consensus 113 ~~D~V~~ 119 (186)
.+|+|+-
T Consensus 98 G~d~vid 104 (175)
T d1cdoa2 98 GVDFSLE 104 (175)
T ss_dssp CBSEEEE
T ss_pred Ccceeee
Confidence 8999987
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.66 E-value=0.003 Score=49.94 Aligned_cols=75 Identities=19% Similarity=0.132 Sum_probs=51.0
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCe-EEEEeCCCCCCCC-cCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEE
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGS-VVGIDVKKVKVPS-LHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~-v~gvDis~~~i~~-~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~ 118 (186)
-+|+||.||.|++...+-.. +- ..+ |+++|+.+.++.- ....+...++.+|+.......+. ...+|+++
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~a-G~---~~~~~~a~E~~~~a~~~~~~n~~~~~~~~~di~~~~~~~~~-----~~~~Dll~ 73 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRES-CI---PAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFD-----RLSFDMIL 73 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHH-TC---SEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHH-----HHCCSEEE
T ss_pred CEEEEcCcCccHHHHHHHHc-CC---CCeEEEEEECCHHHHHHHHHHCCCCCcccCchhhCCHhHcC-----CCCccEEE
Confidence 37999999999998877654 10 123 7899999887654 22234466777888877655442 23689999
Q ss_pred eCCCCC
Q 038391 119 SDMCPS 124 (186)
Q Consensus 119 ~d~~~~ 124 (186)
...+|.
T Consensus 74 ggpPCq 79 (343)
T d1g55a_ 74 MSPPCQ 79 (343)
T ss_dssp ECCC--
T ss_pred eecccc
Confidence 887764
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.37 E-value=0.0032 Score=48.41 Aligned_cols=66 Identities=18% Similarity=0.119 Sum_probs=43.0
Q ss_pred EEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCccc
Q 038391 90 QTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVL 169 (186)
Q Consensus 90 ~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 169 (186)
.|+.+|+.+. +..+ +++++|+|++|+|.............=.+.....+.++.+ +|
T Consensus 6 ~~~~~D~le~----l~~l--~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~r------------------vL 61 (279)
T d1eg2a_ 6 VYDVCDCLDT----LAKL--PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAER------------------VL 61 (279)
T ss_dssp EEEECCHHHH----HHTS--CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHH------------------HE
T ss_pred eEEechHHHH----HhhC--cCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHH------------------Hh
Confidence 3566787643 3333 5789999999987543221111122224556677888888 99
Q ss_pred ccCcEEEEEE
Q 038391 170 KPGGHLVIKL 179 (186)
Q Consensus 170 kpgG~lvi~~ 179 (186)
||+|.+++..
T Consensus 62 k~~G~~~~~~ 71 (279)
T d1eg2a_ 62 SPTGSIAIFG 71 (279)
T ss_dssp EEEEEEEEEE
T ss_pred CCCccEEEec
Confidence 9999999864
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=95.33 E-value=0.016 Score=42.17 Aligned_cols=106 Identities=17% Similarity=0.137 Sum_probs=63.4
Q ss_pred HHHHHcCCCCCCCEEEEEcccC--ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCC-hhhHh
Q 038391 29 QIQKQYKLIKPGSSVLDLGCAP--GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLP-SNQVR 105 (186)
Q Consensus 29 ~~~~~~~~~~~~~~vLDlGcG~--G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~-~~~l~ 105 (186)
..+.....+++|++||-.|++. |.....+++.. +.+|+++.-+++..+.......-..+ |-.+.. ...+.
T Consensus 19 ~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~-----Ga~vi~~~~~~~~~~~~~~~Ga~~vi--~~~~~~~~~~~~ 91 (182)
T d1v3va2 19 FGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK-----GCKVVGAAGSDEKIAYLKQIGFDAAF--NYKTVNSLEEAL 91 (182)
T ss_dssp HHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHHTTCSEEE--ETTSCSCHHHHH
T ss_pred HHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHcc-----CCEEEEeCCCHHHHHHHHhhhhhhhc--ccccccHHHHHH
Confidence 3444455579999999888765 45677777775 57999999887764432221112222 212222 11222
Q ss_pred hhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 106 ALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 106 ~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
... ....+|+|+-. .| ...++.... .|+|+|++++-
T Consensus 92 ~~~-~~~Gvd~v~D~-----vG-------------~~~~~~~~~------------------~l~~~G~~v~~ 127 (182)
T d1v3va2 92 KKA-SPDGYDCYFDN-----VG-------------GEFLNTVLS------------------QMKDFGKIAIC 127 (182)
T ss_dssp HHH-CTTCEEEEEES-----SC-------------HHHHHHHGG------------------GEEEEEEEEEC
T ss_pred HHh-hcCCCceeEEe-----cC-------------chhhhhhhh------------------hccCCCeEEee
Confidence 222 35679999872 12 134455666 89999999864
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=95.13 E-value=0.0073 Score=43.65 Aligned_cols=80 Identities=18% Similarity=0.147 Sum_probs=51.5
Q ss_pred HHcCCCCCCCEEEEEcccC--ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh-hhHhhhC
Q 038391 32 KQYKLIKPGSSVLDLGCAP--GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALS 108 (186)
Q Consensus 32 ~~~~~~~~~~~vLDlGcG~--G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~-~~l~~~~ 108 (186)
.+...+++|++||=.|+|. |.....+++.+ +.+|++++.++...+......--.. .|..+... +.+.+++
T Consensus 21 ~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~-----Ga~Vi~~~~s~~k~~~~~~lGa~~v--i~~~~~d~~~~v~~~t 93 (179)
T d1qora2 21 RKTYEIKPDEQFLFHAAAGGVGLIACQWAKAL-----GAKLIGTVGTAQKAQSALKAGAWQV--INYREEDLVERLKEIT 93 (179)
T ss_dssp HTTSCCCTTCEEEESSTTBHHHHHHHHHHHHH-----TCEEEEEESSHHHHHHHHHHTCSEE--EETTTSCHHHHHHHHT
T ss_pred HHHhCCCCCCEEEEEccccccchHHHHHHHHh-----CCeEeecccchHHHHHHHhcCCeEE--EECCCCCHHHHHHHHh
Confidence 4444578999999996664 66778888886 5899999999987544211111112 24333332 3455554
Q ss_pred CCCCCccEEEe
Q 038391 109 PKQKGFSVILS 119 (186)
Q Consensus 109 ~~~~~~D~V~~ 119 (186)
.+..+|+|+.
T Consensus 94 -~g~g~d~v~d 103 (179)
T d1qora2 94 -GGKKVRVVYD 103 (179)
T ss_dssp -TTCCEEEEEE
T ss_pred -CCCCeEEEEe
Confidence 3678999887
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=94.27 E-value=0.01 Score=42.98 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=32.2
Q ss_pred CCCCCCEEEEEcc-cC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 36 LIKPGSSVLDLGC-AP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~~vLDlGc-G~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.+++|++||=.|+ |+ |.....+++.+ +.+|++++-++...+.
T Consensus 24 ~~~~g~~VlI~ga~G~vG~~aiqlak~~-----G~~vi~~~~~~~~~~~ 67 (171)
T d1iz0a2 24 QARPGEKVLVQAAAGALGTAAVQVARAM-----GLRVLAAASRPEKLAL 67 (171)
T ss_dssp TCCTTCEEEESSTTBHHHHHHHHHHHHT-----TCEEEEEESSGGGSHH
T ss_pred CCCCCCEEEEEeccccchhhhhhhhccc-----cccccccccccccccc
Confidence 4789999999885 43 56667777776 5799999988876544
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=94.11 E-value=0.025 Score=43.73 Aligned_cols=68 Identities=13% Similarity=0.189 Sum_probs=46.3
Q ss_pred CeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCc---ccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCC
Q 038391 88 RVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGIT---TKDAALSVELGMRAVDLALGPAALASPVNNSDSST 164 (186)
Q Consensus 88 ~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (186)
.-.++++|+.+.- ..+ +++++|+|++|+|....... ...+..-.+.....+.++.+
T Consensus 12 ~~~l~~GD~le~l----~~l--~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~r--------------- 70 (320)
T d1booa_ 12 NGSMYIGDSLELL----ESF--PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNK--------------- 70 (320)
T ss_dssp SEEEEESCHHHHG----GGS--CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHH---------------
T ss_pred CCEEEehhHHHHH----hhC--ccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHH---------------
Confidence 3477889987532 222 57899999999875443222 22333334556778888888
Q ss_pred CCcccccCcEEEEEE
Q 038391 165 DSGVLKPGGHLVIKL 179 (186)
Q Consensus 165 ~~~~LkpgG~lvi~~ 179 (186)
+|+|+|.+++..
T Consensus 71 ---vLk~~G~i~i~~ 82 (320)
T d1booa_ 71 ---KLKPDGSFVVDF 82 (320)
T ss_dssp ---HEEEEEEEEEEE
T ss_pred ---hCcccCcccccc
Confidence 999999999865
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.85 E-value=0.022 Score=40.99 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=46.2
Q ss_pred HcCCCCCCCEEEEEcc-c-CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh-hhHhhhCC
Q 038391 33 QYKLIKPGSSVLDLGC-A-PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSP 109 (186)
Q Consensus 33 ~~~~~~~~~~vLDlGc-G-~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~-~~l~~~~~ 109 (186)
....+++|++||=.|+ | .|.++.-+++.+ +.+|++++-+++..+......--.+ .|..+... ..+.+..
T Consensus 19 ~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~-----g~~vi~~~~~~~~~~~l~~~Ga~~v--i~~~~~~~~~~v~~~t- 90 (183)
T d1pqwa_ 19 EVGRLSPGERVLIHSATGGVGMAAVSIAKMI-----GARIYTTAGSDAKREMLSRLGVEYV--GDSRSVDFADEILELT- 90 (183)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHH-----TCEEEEEESSHHHHHHHHTTCCSEE--EETTCSTHHHHHHHHT-
T ss_pred HHhCCCCCCEEEEECCCCCcccccchhhccc-----cccceeeeccccccccccccccccc--ccCCccCHHHHHHHHh-
Confidence 3445789999999874 3 356667777776 5789988877655332111111111 23333332 3444444
Q ss_pred CCCCccEEEe
Q 038391 110 KQKGFSVILS 119 (186)
Q Consensus 110 ~~~~~D~V~~ 119 (186)
.+..||+|+.
T Consensus 91 ~~~g~d~v~d 100 (183)
T d1pqwa_ 91 DGYGVDVVLN 100 (183)
T ss_dssp TTCCEEEEEE
T ss_pred CCCCEEEEEe
Confidence 3578999997
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=93.64 E-value=0.036 Score=42.77 Aligned_cols=50 Identities=18% Similarity=0.137 Sum_probs=36.7
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.|++.+.... -++|..|||..||+|..+...... +-+.+|+|++++.++.
T Consensus 238 ~L~~rlI~~~-s~~gdiVlDpF~GSGTT~~AA~~l------gR~~Ig~El~~~y~~~ 287 (320)
T d1booa_ 238 KLPEFFIRML-TEPDDLVVDIFGGSNTTGLVAERE------SRKWISFEMKPEYVAA 287 (320)
T ss_dssp HHHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHHT------TCEEEEEESCHHHHHH
T ss_pred HHHHHhhhhc-ccCCCEEEecCCCCcHHHHHHHHc------CCcEEEEeCCHHHHHH
Confidence 5555444333 378999999999999766655554 5799999999988543
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=93.63 E-value=0.018 Score=45.27 Aligned_cols=71 Identities=11% Similarity=0.089 Sum_probs=48.4
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCCc-CCCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPSL-HCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~~-~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
.+-+||||.||.|+++..+-+. |. .|.++|+.+.+++.. ...... .++|+.+..... -..+|+
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a------G~~~v~a~e~d~~a~~~~~~N~~~~--~~~Di~~~~~~~-------~~~~Dl 74 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC------GAECVYSNEWDKYAQEVYEMNFGEK--PEGDITQVNEKT-------IPDHDI 74 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT------TCEEEEEECCCHHHHHHHHHHHSCC--CBSCGGGSCGGG-------SCCCSE
T ss_pred CCCeEEEECccccHHHHHHHHC------CCeEEEEEeCCHHHHHHHHHHCCCC--CcCchhcCchhh-------cceeee
Confidence 3579999999999999988765 34 467799999875431 111111 247777765442 246999
Q ss_pred EEeCCCCC
Q 038391 117 ILSDMCPS 124 (186)
Q Consensus 117 V~~d~~~~ 124 (186)
++...+|.
T Consensus 75 l~ggpPCq 82 (327)
T d2c7pa1 75 LCAGFPCQ 82 (327)
T ss_dssp EEEECCCT
T ss_pred eecccccc
Confidence 99987653
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=93.49 E-value=0.03 Score=42.06 Aligned_cols=66 Identities=15% Similarity=0.159 Sum_probs=43.1
Q ss_pred EEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCC---cccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCC
Q 038391 90 QTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGI---TTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDS 166 (186)
Q Consensus 90 ~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (186)
++.++|+.+. +..+ +++++|+|++|+|...... ...+...=.+.....+.++.+
T Consensus 6 ~i~~gDcle~----l~~l--pd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~r----------------- 62 (256)
T d1g60a_ 6 KIHQMNCFDF----LDQV--ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLD----------------- 62 (256)
T ss_dssp SEEECCHHHH----HHHS--CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHH-----------------
T ss_pred EEEeccHHHH----HhhC--cCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhh-----------------
Confidence 3678888653 3333 5789999999987543321 111222333456678888888
Q ss_pred cccccCcEEEEEE
Q 038391 167 GVLKPGGHLVIKL 179 (186)
Q Consensus 167 ~~LkpgG~lvi~~ 179 (186)
+|+|+|.+++..
T Consensus 63 -vLk~~g~~~~~~ 74 (256)
T d1g60a_ 63 -KLDKDGSLYIFN 74 (256)
T ss_dssp -HEEEEEEEEEEE
T ss_pred -ccccCccccccc
Confidence 999999987653
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.29 E-value=0.067 Score=40.49 Aligned_cols=49 Identities=27% Similarity=0.295 Sum_probs=35.5
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
.|++...... -.+|..|||..||+|..+.+.... +-+.+|+|+++...+
T Consensus 195 ~L~~~~I~~~-s~~gdiVLDpF~GSGTT~~Aa~~l------gR~~ig~El~~~y~~ 243 (279)
T d1eg2a_ 195 AVIERLVRAL-SHPGSTVLDFFAGSGVTARVAIQE------GRNSICTDAAPVFKE 243 (279)
T ss_dssp HHHHHHHHHH-SCTTCEEEETTCTTCHHHHHHHHH------TCEEEEEESSTHHHH
T ss_pred hHHHHHHHhh-cCCCCEEEecCCCCcHHHHHHHHh------CCeEEEEeCCHHHHH
Confidence 4555333322 378999999999999766555554 569999999998743
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=92.79 E-value=0.065 Score=40.04 Aligned_cols=48 Identities=25% Similarity=0.259 Sum_probs=33.8
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKV 80 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i 80 (186)
.|++...... -.+|..|||..||+|..+....+. +-+.+|+|+++..+
T Consensus 200 ~L~~~lI~~~-s~~gd~VlDpF~GSGTT~~aa~~~------~R~~ig~El~~~y~ 247 (256)
T d1g60a_ 200 DLIERIIRAS-SNPNDLVLDCFMGSGTTAIVAKKL------GRNFIGCDMNAEYV 247 (256)
T ss_dssp HHHHHHHHHH-CCTTCEEEESSCTTCHHHHHHHHT------TCEEEEEESCHHHH
T ss_pred hHHHHHHHHh-CCCCCEEEECCCCchHHHHHHHHc------CCeEEEEeCCHHHH
Confidence 4555333322 278999999999999766555554 56999999998653
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=92.49 E-value=0.47 Score=38.26 Aligned_cols=16 Identities=31% Similarity=0.750 Sum_probs=13.4
Q ss_pred ccccCcEEEEEEccCC
Q 038391 168 VLKPGGHLVIKLLESQ 183 (186)
Q Consensus 168 ~LkpgG~lvi~~~~~~ 183 (186)
-|+|||+|++..+--+
T Consensus 198 ELv~GG~mvl~~~gr~ 213 (359)
T d1m6ex_ 198 EVVPGGRMVLTILGRR 213 (359)
T ss_dssp HBCTTCEEEEEEEECS
T ss_pred HhcCCcEEEEEEeccC
Confidence 7999999999887543
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.19 E-value=0.075 Score=38.67 Aligned_cols=43 Identities=19% Similarity=0.077 Sum_probs=32.5
Q ss_pred CCCCCCCEEEEEcccC--ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 35 KLIKPGSSVLDLGCAP--GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~--G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
...++|++||--|++. |.+...+++.. +.+|++.--++...+.
T Consensus 27 g~~~~g~~VLI~gaaGGVG~~aiQlak~~-----Ga~Viat~~s~~k~~~ 71 (176)
T d1xa0a2 27 GLTPERGPVLVTGATGGVGSLAVSMLAKR-----GYTVEASTGKAAEHDY 71 (176)
T ss_dssp TCCGGGCCEEESSTTSHHHHHHHHHHHHT-----TCCEEEEESCTTCHHH
T ss_pred CCCCCCCEEEEEeccchHHHHHHHHHHHc-----CCceEEecCchHHHHH
Confidence 3467788999988654 56777777775 6899999988888654
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.17 E-value=0.047 Score=41.20 Aligned_cols=38 Identities=26% Similarity=0.210 Sum_probs=28.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK 79 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~ 79 (186)
+|++||=.|++ |+++..+++.+-. .|.+|+.+|..+..
T Consensus 1 egK~vlITGas-~GIG~a~a~~l~~--~G~~V~~~~~~~~~ 38 (236)
T d1dhra_ 1 EARRVLVYGGR-GALGSRCVQAFRA--RNWWVASIDVVENE 38 (236)
T ss_dssp CCCEEEEETTT-SHHHHHHHHHHHT--TTCEEEEEESSCCT
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHH--CCCEEEEEeCCccc
Confidence 47788888876 5577777777654 27799999987765
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.13 E-value=0.3 Score=35.18 Aligned_cols=101 Identities=17% Similarity=0.201 Sum_probs=59.1
Q ss_pred HcCCCCCC--CEEEEEcc-c-CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-c-CCCCCeEEEEeeecCCC-hhhHh
Q 038391 33 QYKLIKPG--SSVLDLGC-A-PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-L-HCDARVQTVSADVINLP-SNQVR 105 (186)
Q Consensus 33 ~~~~~~~~--~~vLDlGc-G-~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-~-~~~~~~~~~~~d~~~~~-~~~l~ 105 (186)
....+++| ++||=.|+ | .|.+...+++.++. ..|+++.-+++.... . ..... . ..|..... .+.+.
T Consensus 22 ~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga----~~vi~~~~~~e~~~~l~~~~gad-~--vi~~~~~~~~~~~~ 94 (187)
T d1vj1a2 22 EKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGC----SRVVGICGTQEKCLFLTSELGFD-A--AVNYKTGNVAEQLR 94 (187)
T ss_dssp HHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTC----SEEEEEESSHHHHHHHHHHSCCS-E--EEETTSSCHHHHHH
T ss_pred HHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCC----cceecccchHHHHhhhhhcccce-E--EeeccchhHHHHHH
Confidence 33446776 78998874 3 58899999998752 468887777655221 1 11111 1 12333332 23344
Q ss_pred hhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 106 ALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 106 ~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
... ++.+|+|+-. .| ...+....+ .|+++|+++.-
T Consensus 95 ~~~--~~GvDvv~D~-----vG-------------g~~~~~~~~------------------~l~~~G~iv~~ 129 (187)
T d1vj1a2 95 EAC--PGGVDVYFDN-----VG-------------GDISNTVIS------------------QMNENSHIILC 129 (187)
T ss_dssp HHC--TTCEEEEEES-----SC-------------HHHHHHHHT------------------TEEEEEEEEEC
T ss_pred HHh--ccCceEEEec-----CC-------------chhHHHHhh------------------hccccccEEEe
Confidence 443 3579999862 22 124455666 89999999863
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=89.81 E-value=0.14 Score=38.70 Aligned_cols=81 Identities=15% Similarity=0.132 Sum_probs=52.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh--hhHhhhCCCCCCccE
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS--NQVRALSPKQKGFSV 116 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~~D~ 116 (186)
+++.+|--|++.| ++..+++.+-. .|.+|+.+|.++..++......+..+++.|+++... ..+......-+++|+
T Consensus 4 ~gK~~lITGas~G-IG~aia~~l~~--~G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi 80 (242)
T d1ulsa_ 4 KDKAVLITGAAHG-IGRATLELFAK--EGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDG 80 (242)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCE
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCceE
Confidence 4677777777665 77777766643 278999999988776553334457788899887531 111111111257999
Q ss_pred EEeCCC
Q 038391 117 ILSDMC 122 (186)
Q Consensus 117 V~~d~~ 122 (186)
++.+..
T Consensus 81 lVnnAG 86 (242)
T d1ulsa_ 81 VVHYAG 86 (242)
T ss_dssp EEECCC
T ss_pred EEECCc
Confidence 998864
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.50 E-value=0.17 Score=38.45 Aligned_cols=82 Identities=13% Similarity=0.114 Sum_probs=52.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCCh--hhHhhhCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPS--NQVRALSP 109 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~--~~l~~~~~ 109 (186)
.|+.+|--|++ ++++..+++.+-. .|.+|+.+|.+++.+.. .....++.+++.|+++... ..+.....
T Consensus 2 ~GKvalITGas-~GIG~aia~~la~--~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (254)
T d2gdza1 2 NGKVALVTGAA-QGIGRAFAEALLL--KGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVD 78 (254)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence 36677777866 4577777776643 27899999998766432 2223578888999987531 11111111
Q ss_pred CCCCccEEEeCCCC
Q 038391 110 KQKGFSVILSDMCP 123 (186)
Q Consensus 110 ~~~~~D~V~~d~~~ 123 (186)
.-+++|+++.++..
T Consensus 79 ~~G~iDilVnnAg~ 92 (254)
T d2gdza1 79 HFGRLDILVNNAGV 92 (254)
T ss_dssp HHSCCCEEEECCCC
T ss_pred HcCCcCeecccccc
Confidence 12589999998753
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=89.08 E-value=0.25 Score=35.31 Aligned_cols=41 Identities=20% Similarity=0.081 Sum_probs=30.1
Q ss_pred CCCCCEEEEEccc--CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 37 IKPGSSVLDLGCA--PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 37 ~~~~~~vLDlGcG--~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.++++.||--|++ .|.+..-+++.+ +.+|+++.-+++..+.
T Consensus 21 ~~~~~~VLV~gaaGgVG~~avQlAk~~-----Ga~Viat~~s~~k~~~ 63 (167)
T d1tt7a2 21 SPEKGSVLVTGATGGVGGIAVSMLNKR-----GYDVVASTGNREAADY 63 (167)
T ss_dssp CGGGCCEEEESTTSHHHHHHHHHHHHH-----TCCEEEEESSSSTHHH
T ss_pred CCCCCEEEEeCCcchHHHHHHHHHHHc-----CCceEEEecCHHHHHH
Confidence 4567778877653 356777778877 5899999998887544
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=88.79 E-value=0.034 Score=38.16 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=46.5
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEe
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILS 119 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~ 119 (186)
+|+=+ |-|.++..+++.+.. .+..|+.+|.+++.+..........++.+|..+.. .+.+.. -+.+|.+++
T Consensus 2 ~IvI~--G~G~~G~~la~~L~~--~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~--~l~~~~--i~~a~~vv~ 71 (132)
T d1lssa_ 2 YIIIA--GIGRVGYTLAKSLSE--KGHDIVLIDIDKDICKKASAEIDALVINGDCTKIK--TLEDAG--IEDADMYIA 71 (132)
T ss_dssp EEEEE--CCSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHH--HHHHTT--TTTCSEEEE
T ss_pred EEEEE--CCCHHHHHHHHHHHH--CCCCcceecCChhhhhhhhhhhhhhhccCcccchh--hhhhcC--hhhhhhhcc
Confidence 34444 458888888877643 15689999999988765322235678899987653 333332 257888887
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.95 E-value=0.25 Score=37.24 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=53.1
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-cCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEE
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-LHCDARVQTVSADVINLPSNQVRALSPKQKGFSVI 117 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V 117 (186)
+|+++|--|++. +++..+++.+-. .|.+|+.+|.++..+.. .....++..++.|+++.. .++.+...-+++|++
T Consensus 6 ~GK~~lITGas~-GIG~aia~~la~--~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~--~v~~~~~~~g~iDil 80 (244)
T d1pr9a_ 6 AGRRVLVTGAGK-GIGRGTVQALHA--TGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWE--ATERALGSVGPVDLL 80 (244)
T ss_dssp TTCEEEEESTTS-HHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHH--HHHHHHTTCCCCCEE
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHH--cCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHH--HHHHHHHHhCCceEE
Confidence 578888888665 577777766543 27899999998876543 122235778888887643 344443334689999
Q ss_pred EeCCC
Q 038391 118 LSDMC 122 (186)
Q Consensus 118 ~~d~~ 122 (186)
+.+..
T Consensus 81 VnnAg 85 (244)
T d1pr9a_ 81 VNNAA 85 (244)
T ss_dssp EECCC
T ss_pred Eeccc
Confidence 98864
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.20 E-value=0.23 Score=37.91 Aligned_cols=82 Identities=16% Similarity=0.062 Sum_probs=52.1
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCCh--hhHhhhCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPS--NQVRALSPKQK 112 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~ 112 (186)
|++|.=+.=|+++++..+++.+-.. ++.+|+..+.+++.++. .....++.+++.|+++... ..........+
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~-~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g 80 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRL-FSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG 80 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHH-SSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence 6788777666677887777664210 25799999998877543 1234568888999887541 11111111125
Q ss_pred CccEEEeCCC
Q 038391 113 GFSVILSDMC 122 (186)
Q Consensus 113 ~~D~V~~d~~ 122 (186)
.+|+++.|+.
T Consensus 81 ~iDiLVnNAG 90 (275)
T d1wmaa1 81 GLDVLVNNAG 90 (275)
T ss_dssp SEEEEEECCC
T ss_pred CcEEEEEcCC
Confidence 8999999874
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.79 E-value=0.42 Score=36.23 Aligned_cols=80 Identities=15% Similarity=0.176 Sum_probs=51.6
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCCh--hhHhhhCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPS--NQVRALSPK 110 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~--~~l~~~~~~ 110 (186)
++.+|--|++.| ++..+++.+-. .|.+|+..|.++..++. .....++.+++.|+++... ..+......
T Consensus 10 ~Kv~lITGas~G-IG~aiA~~la~--~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~ 86 (257)
T d1xg5a_ 10 DRLALVTGASGG-IGAAVARALVQ--QGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ 86 (257)
T ss_dssp TCEEEEESTTSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 677888887655 67777766543 27899999998876543 1223478888999987531 111112112
Q ss_pred CCCccEEEeCCC
Q 038391 111 QKGFSVILSDMC 122 (186)
Q Consensus 111 ~~~~D~V~~d~~ 122 (186)
-+.+|+++.+..
T Consensus 87 ~g~iD~lVnnAg 98 (257)
T d1xg5a_ 87 HSGVDICINNAG 98 (257)
T ss_dssp HCCCSEEEECCC
T ss_pred cCCCCEEEeccc
Confidence 357999998864
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=86.61 E-value=0.089 Score=38.31 Aligned_cols=69 Identities=16% Similarity=0.226 Sum_probs=45.1
Q ss_pred CCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc--CCCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 40 GSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL--HCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 40 ~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~--~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
..+|+-+|+|. |......+..+ +.+|+.+|.++..++.. ....++.+...+- ..+.+.. ...|+
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~l-----GA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~-----~~l~~~~---~~aDi 98 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGL-----GAQVQIFDINVERLSYLETLFGSRVELLYSNS-----AEIETAV---AEADL 98 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-----TCEEEEEESCHHHHHHHHHHHGGGSEEEECCH-----HHHHHHH---HTCSE
T ss_pred CcEEEEECCChHHHHHHHHHhhC-----CCEEEEEeCcHHHHHHHHHhhcccceeehhhh-----hhHHHhh---ccCcE
Confidence 45999999997 77778888887 58999999998886541 1122344333221 2222222 37899
Q ss_pred EEeCC
Q 038391 117 ILSDM 121 (186)
Q Consensus 117 V~~d~ 121 (186)
||.-.
T Consensus 99 vI~aa 103 (168)
T d1pjca1 99 LIGAV 103 (168)
T ss_dssp EEECC
T ss_pred EEEee
Confidence 99854
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=85.33 E-value=0.39 Score=36.32 Aligned_cols=81 Identities=17% Similarity=0.120 Sum_probs=50.9
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCCh--hhHhhhCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPS--NQVRALSPK 110 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~--~~l~~~~~~ 110 (186)
+|+.+|--|++. +++..+++.+-. .|.+|+.+|.+++.+.. .....++.+++.|+++... ..++.....
T Consensus 4 ~gK~~lITGas~-GIG~aia~~la~--~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (251)
T d1vl8a_ 4 RGRVALVTGGSR-GLGFGIAQGLAE--AGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEK 80 (251)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 477788888765 467776666543 27899999998776433 1223467788899886531 111111111
Q ss_pred CCCccEEEeCCC
Q 038391 111 QKGFSVILSDMC 122 (186)
Q Consensus 111 ~~~~D~V~~d~~ 122 (186)
-+++|+++.+..
T Consensus 81 ~g~iDiLVnnAG 92 (251)
T d1vl8a_ 81 FGKLDTVVNAAG 92 (251)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCCCEEEECCC
Confidence 257999999864
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=84.89 E-value=0.47 Score=35.77 Aligned_cols=81 Identities=10% Similarity=-0.005 Sum_probs=50.7
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCCCCeEEEEeeecCCCh--hhHhhhCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCDARVQTVSADVINLPS--NQVRALSPKQK 112 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~ 112 (186)
+|+.+|--|+ +++++..+++.+-. .|.+|+.+|.+++.++. .....++.+++.|+++... ..+......-+
T Consensus 5 ~gK~alVTGa-s~GIG~aia~~la~--~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 81 (251)
T d1zk4a1 5 DGKVAIITGG-TLGIGLAIATKFVE--EGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFG 81 (251)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 3666666665 55577777766543 27899999998766433 1233578889999887541 11111111125
Q ss_pred CccEEEeCCC
Q 038391 113 GFSVILSDMC 122 (186)
Q Consensus 113 ~~D~V~~d~~ 122 (186)
++|+++.+..
T Consensus 82 ~iDiLVnnAg 91 (251)
T d1zk4a1 82 PVSTLVNNAG 91 (251)
T ss_dssp SCCEEEECCC
T ss_pred CceEEEeccc
Confidence 8999998864
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=84.81 E-value=1.1 Score=34.37 Aligned_cols=74 Identities=19% Similarity=0.143 Sum_probs=49.5
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCC
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~ 121 (186)
+||=.|+ +|.++.++++.+-.. +..+|+++|.............+++++++|+++... ..+.. ...+|.|+--+
T Consensus 2 KILITG~-tGfiG~~l~~~Ll~~-g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~-~~~~~---~~~~d~Vih~a 75 (342)
T d2blla1 2 RVLILGV-NGFIGNHLTERLLRE-DHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSE-WIEYH---VKKCDVVLPLV 75 (342)
T ss_dssp EEEEETC-SSHHHHHHHHHHHHS-TTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSH-HHHHH---HHHCSEEEECB
T ss_pred EEEEECC-CcHHHHHHHHHHHHC-CCCEEEEEeCCCcchhhhccCCCeEEEECccCChHH-HHHHH---HhCCCcccccc
Confidence 5666665 999999999876321 125899999977665554456789999999876542 11111 13688887633
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.47 E-value=0.49 Score=35.53 Aligned_cols=79 Identities=13% Similarity=0.140 Sum_probs=52.2
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-cCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEE
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-LHCDARVQTVSADVINLPSNQVRALSPKQKGFSVI 117 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V 117 (186)
+|+++|--|++. +++..+++.+-. .|.+|+.+|.++..+.. .....++..++.|+++.. .++.....-++.|++
T Consensus 4 ~GK~alITGas~-GIG~aia~~la~--~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~--~v~~~~~~~g~iDil 78 (242)
T d1cyda_ 4 SGLRALVTGAGK-GIGRDTVKALHA--SGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWD--ATEKALGGIGPVDLL 78 (242)
T ss_dssp TTCEEEEESTTS-HHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHH--HHHHHHTTCCCCSEE
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHH--HHHHHHHHcCCCeEE
Confidence 477888777665 477777766543 27899999988766433 122245778888887643 333443333689999
Q ss_pred EeCCC
Q 038391 118 LSDMC 122 (186)
Q Consensus 118 ~~d~~ 122 (186)
+.+..
T Consensus 79 VnnAg 83 (242)
T d1cyda_ 79 VNNAA 83 (242)
T ss_dssp EECCC
T ss_pred EECCc
Confidence 98864
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.67 E-value=0.51 Score=35.59 Aligned_cols=80 Identities=18% Similarity=0.201 Sum_probs=50.6
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCCh-h-hHhhhCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPS-N-QVRALSPKQK 112 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~-~-~l~~~~~~~~ 112 (186)
|+.+|=-|++.| ++..++..+-. .|.+|+.+|.+++.++. .....++.++..|+++... . .+.......+
T Consensus 7 Gkv~lITGas~G-IG~~ia~~la~--~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g 83 (244)
T d1yb1a_ 7 GEIVLITGAGHG-IGRLTAYEFAK--LKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIG 83 (244)
T ss_dssp TCEEEEETTTSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 666666677666 56666655433 17899999999877543 1233568888999887641 1 1111111235
Q ss_pred CccEEEeCCC
Q 038391 113 GFSVILSDMC 122 (186)
Q Consensus 113 ~~D~V~~d~~ 122 (186)
..|+++.+..
T Consensus 84 ~idilinnag 93 (244)
T d1yb1a_ 84 DVSILVNNAG 93 (244)
T ss_dssp CCSEEEECCC
T ss_pred CCceeEeecc
Confidence 7999998864
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=82.57 E-value=0.4 Score=36.40 Aligned_cols=81 Identities=17% Similarity=0.085 Sum_probs=51.8
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC--cCCCCCeEEEEeeecCCCh--hhHhhhCCCCCCc
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS--LHCDARVQTVSADVINLPS--NQVRALSPKQKGF 114 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~--~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~~ 114 (186)
+|+.+|--|++.| ++..+++.+-. .|.+|+.+|.+++.+.. .....++.+++.|+++... ..++.....-++.
T Consensus 4 ~gK~alVTGas~G-IG~aia~~la~--~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 80 (254)
T d1hdca_ 4 SGKTVIITGGARG-LGAEAARQAVA--AGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSV 80 (254)
T ss_dssp CCSEEEEETTTSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCcCCH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCCc
Confidence 4778888887765 66666666543 27899999998876543 2233568888999886531 1111111112579
Q ss_pred cEEEeCCC
Q 038391 115 SVILSDMC 122 (186)
Q Consensus 115 D~V~~d~~ 122 (186)
|+++.++.
T Consensus 81 DilVnnAg 88 (254)
T d1hdca_ 81 DGLVNNAG 88 (254)
T ss_dssp CEEEECCC
T ss_pred cEEEecCc
Confidence 99998864
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=82.27 E-value=0.14 Score=39.03 Aligned_cols=81 Identities=12% Similarity=0.119 Sum_probs=51.6
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCCh-h-hHhhhCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPS-N-QVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~-~-~l~~~~~~~ 111 (186)
+|+.+|--| |+++++..+++.+-. .|.+|+.+|.+++.++. .....++.+++.|+++... . .+......-
T Consensus 10 ~gK~alITG-as~GIG~aia~~la~--~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~ 86 (255)
T d1fmca_ 10 DGKCAIITG-AGAGIGKEIAITFAT--AGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL 86 (255)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHT--TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 466666555 456688888877654 27899999998776543 2233568888999987531 1 111111112
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
+.+|+++.+..
T Consensus 87 g~iDilvnnAG 97 (255)
T d1fmca_ 87 GKVDILVNNAG 97 (255)
T ss_dssp SSCCEEEECCC
T ss_pred CCCCEeeeCCc
Confidence 57999999864
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=82.17 E-value=0.35 Score=32.49 Aligned_cols=65 Identities=17% Similarity=0.246 Sum_probs=43.6
Q ss_pred ccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEe
Q 038391 48 CAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILS 119 (186)
Q Consensus 48 cG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~ 119 (186)
||-|.++..+++.+.. .+..|+.+|.+++.+...... ....+.+|.++... +.+.. -..+|.+++
T Consensus 6 iG~G~~G~~la~~L~~--~g~~vvvid~d~~~~~~~~~~-~~~~~~gd~~~~~~--l~~a~--i~~a~~vi~ 70 (134)
T d2hmva1 6 IGLGRFGGSIVKELHR--MGHEVLAVDINEEKVNAYASY-ATHAVIANATEENE--LLSLG--IRNFEYVIV 70 (134)
T ss_dssp ECCSHHHHHHHHHHHH--TTCCCEEEESCHHHHHHTTTT-CSEEEECCTTCTTH--HHHHT--GGGCSEEEE
T ss_pred ECCCHHHHHHHHHHHH--CCCeEEEecCcHHHHHHHHHh-CCcceeeecccchh--hhccC--CccccEEEE
Confidence 4667888888887653 267899999999887653332 34567788877653 33321 246888776
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=82.08 E-value=1.4 Score=32.47 Aligned_cols=73 Identities=12% Similarity=0.069 Sum_probs=48.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEE
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~ 118 (186)
+++++|--|++. +++..+++.+-. .|.+|+.+|.+++.++.. ..+++..|+++.....++.+ +++|+++
T Consensus 3 kgK~~lVTGas~-GIG~aia~~l~~--~Ga~V~~~~r~~~~l~~~----~~~~~~~Dv~~~~~~~~~~~----g~iD~lV 71 (234)
T d1o5ia_ 3 RDKGVLVLAASR-GIGRAVADVLSQ--EGAEVTICARNEELLKRS----GHRYVVCDLRKDLDLLFEKV----KEVDILV 71 (234)
T ss_dssp TTCEEEEESCSS-HHHHHHHHHHHH--TTCEEEEEESCHHHHHHT----CSEEEECCTTTCHHHHHHHS----CCCSEEE
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHH--CCCEEEEEECCHHHHHhc----CCcEEEcchHHHHHHHHHHh----CCCcEEE
Confidence 467888888665 477777766643 278999999987665432 23566778765432222322 5799999
Q ss_pred eCCC
Q 038391 119 SDMC 122 (186)
Q Consensus 119 ~d~~ 122 (186)
.+..
T Consensus 72 nnAG 75 (234)
T d1o5ia_ 72 LNAG 75 (234)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9864
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=81.81 E-value=0.42 Score=36.31 Aligned_cols=81 Identities=16% Similarity=0.156 Sum_probs=51.2
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCCCCeEEEEeeecCCCh--hhHhhhCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCDARVQTVSADVINLPS--NQVRALSPKQK 112 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~ 112 (186)
+|+.+|--|++.| ++..+++.+-. .|.+|+.+|.++..++. .....++.+++.|+++... ..+......-+
T Consensus 5 ~gKvalITGas~G-IG~aia~~la~--~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (268)
T d2bgka1 5 QDKVAIITGGAGG-IGETTAKLFVR--YGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHG 81 (268)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4778888886655 77777766543 27899999998866443 1223467888889876531 11111111125
Q ss_pred CccEEEeCCC
Q 038391 113 GFSVILSDMC 122 (186)
Q Consensus 113 ~~D~V~~d~~ 122 (186)
.+|+++.+..
T Consensus 82 ~iD~lVnnAG 91 (268)
T d2bgka1 82 KLDIMFGNVG 91 (268)
T ss_dssp CCCEEEECCC
T ss_pred Ccceeccccc
Confidence 8999998764
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=81.05 E-value=0.84 Score=31.71 Aligned_cols=39 Identities=21% Similarity=0.223 Sum_probs=23.6
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
+|+=+||| .++..++..+...+...+|+|+|.++..++.
T Consensus 3 ~I~IIG~G--~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~ 41 (171)
T d2g5ca2 3 NVLIVGVG--FMGGSFAKSLRRSGFKGKIYGYDINPESISK 41 (171)
T ss_dssp EEEEESCS--HHHHHHHHHHHHTTCCSEEEEECSCHHHHHH
T ss_pred EEEEEccC--HHHHHHHHHHHhcCCCeEEEEEECChHHHHH
Confidence 46778775 4444444443221123589999999877543
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=80.80 E-value=1.7 Score=33.16 Aligned_cols=76 Identities=17% Similarity=0.175 Sum_probs=50.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCCCCeEEEEeeecCCChhhHhhhCCCCCCc
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCDARVQTVSADVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~ 114 (186)
++++||-.|+ +|.++.++++.+-.. +.+|+++|..+..... .....+++++.+|+.+.. .+.+.. ....+
T Consensus 7 ~~KkILVTG~-tGfIGs~lv~~Ll~~--g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~--~l~~~~-~~~~~ 80 (356)
T d1rkxa_ 7 QGKRVFVTGH-TGFKGGWLSLWLQTM--GATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQN--KLLESI-REFQP 80 (356)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHT--TCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHH--HHHHHH-HHHCC
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHC--CCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChH--hhhhhh-hhchh
Confidence 4688998874 599999998776432 5799999988766443 233457999999987643 121111 12356
Q ss_pred cEEEeC
Q 038391 115 SVILSD 120 (186)
Q Consensus 115 D~V~~d 120 (186)
|+|+.-
T Consensus 81 ~~v~~~ 86 (356)
T d1rkxa_ 81 EIVFHM 86 (356)
T ss_dssp SEEEEC
T ss_pred hhhhhh
Confidence 777653
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=80.71 E-value=0.37 Score=36.21 Aligned_cols=81 Identities=17% Similarity=0.153 Sum_probs=51.9
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC--cCCCCCeEEEEeeecCCCh--hhHhhhCCCCCCc
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS--LHCDARVQTVSADVINLPS--NQVRALSPKQKGF 114 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~--~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~~ 114 (186)
+|+.+|=.|++ ++++..+++.+-. .|.+|+..+.+...+.. .....++.+++.|+++... ..+......-+++
T Consensus 4 ~gK~alItGas-~GIG~aia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~i 80 (241)
T d2a4ka1 4 SGKTILVTGAA-SGIGRAALDLFAR--EGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRL 80 (241)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 46677777776 4577777776643 27899999998877543 3344578888999886531 1111111112579
Q ss_pred cEEEeCCC
Q 038391 115 SVILSDMC 122 (186)
Q Consensus 115 D~V~~d~~ 122 (186)
|+++.+..
T Consensus 81 DiLinnAg 88 (241)
T d2a4ka1 81 HGVAHFAG 88 (241)
T ss_dssp CEEEEGGG
T ss_pred cEeccccc
Confidence 99998753
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=80.59 E-value=0.38 Score=36.10 Aligned_cols=82 Identities=13% Similarity=0.108 Sum_probs=49.8
Q ss_pred CCCEEEEEcccCC-hHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCCCCeEEEEeeecCCCh-h-hHhhhCCCC
Q 038391 39 PGSSVLDLGCAPG-AWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCDARVQTVSADVINLPS-N-QVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~G-~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~~~~~~~~~d~~~~~~-~-~l~~~~~~~ 111 (186)
+|+++|--|++.+ +++..+++++-. .|.+|+..+.++..... .....+..+++.|+++... . .+......-
T Consensus 7 ~gK~alITGas~~~GIG~aiA~~la~--~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 84 (256)
T d1ulua_ 7 SGKKALVMGVTNQRSLGFAIAAKLKE--AGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAF 84 (256)
T ss_dssp TTCEEEEESCCCSSSHHHHHHHHHHH--TTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHH--CCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhc
Confidence 5788999998764 577777766543 27899999987654322 1222356778888876531 1 111111112
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
++.|+++.+..
T Consensus 85 g~iDilVnnag 95 (256)
T d1ulua_ 85 GGLDYLVHAIA 95 (256)
T ss_dssp SSEEEEEECCC
T ss_pred CCceEEEeccc
Confidence 57999988753
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=80.51 E-value=1.2 Score=33.50 Aligned_cols=81 Identities=10% Similarity=0.106 Sum_probs=52.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCCh--hhHhhhCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPS--NQVRALSPK 110 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~--~~l~~~~~~ 110 (186)
+|+.+|--|+ +++++..+++.+-. .|.+|+.+|.++..+.. .....++.+++.|+++... ..++.....
T Consensus 8 ~gK~alITGa-s~GIG~aia~~la~--~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (260)
T d1h5qa_ 8 VNKTIIVTGG-NRGIGLAFTRAVAA--AGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDAD 84 (260)
T ss_dssp TTEEEEEETT-TSHHHHHHHHHHHH--TTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 3667777775 55677777776643 27899999999887543 1223568888999887541 112222112
Q ss_pred CCCccEEEeCCC
Q 038391 111 QKGFSVILSDMC 122 (186)
Q Consensus 111 ~~~~D~V~~d~~ 122 (186)
-+..|+++.+..
T Consensus 85 ~g~iDilVnnAg 96 (260)
T d1h5qa_ 85 LGPISGLIANAG 96 (260)
T ss_dssp SCSEEEEEECCC
T ss_pred hCCCcEeccccc
Confidence 358999998764
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=80.51 E-value=1.3 Score=34.73 Aligned_cols=77 Identities=18% Similarity=0.101 Sum_probs=46.3
Q ss_pred CCEEEEEcccCChHHHHHHHHh-CCCCCCCeEEEEeC-CCCC-----CC----------------CcCCCCCeEEEEeee
Q 038391 40 GSSVLDLGCAPGAWLQVACQSL-GPLDNGGSVVGIDV-KKVK-----VP----------------SLHCDARVQTVSADV 96 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~-~~~~~~~~v~gvDi-s~~~-----i~----------------~~~~~~~~~~~~~d~ 96 (186)
+.+||=.| |+|++++++++++ .. .+.+|+++|. .... .. ......++.++++|+
T Consensus 2 ~MKVLITG-~tGfIGs~lv~~LL~~--~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di 78 (383)
T d1gy8a_ 2 HMRVLVCG-GAGYIGSHFVRALLRD--TNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDV 78 (383)
T ss_dssp CCEEEEET-TTSHHHHHHHHHHHHH--CCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCT
T ss_pred cCEEEEeC-CCcHHHHHHHHHHHHh--CCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcc
Confidence 45777555 8999999988776 11 1568999994 1111 00 012234688899998
Q ss_pred cCCChhhHhhhCCCCCCccEEEeCC
Q 038391 97 INLPSNQVRALSPKQKGFSVILSDM 121 (186)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~D~V~~d~ 121 (186)
.+.. .+..+......+|+|+--+
T Consensus 79 ~d~~--~l~~~~~~~~~~d~ViH~A 101 (383)
T d1gy8a_ 79 RNED--FLNGVFTRHGPIDAVVHMC 101 (383)
T ss_dssp TCHH--HHHHHHHHSCCCCEEEECC
T ss_pred cCHH--Hhhhhhhccceeehhhccc
Confidence 8643 2333321234689998644
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.24 E-value=0.44 Score=35.99 Aligned_cols=81 Identities=19% Similarity=0.162 Sum_probs=51.5
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC--cCCCCCeEEEEeeecCCCh--hhHhhhCCCCCCc
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS--LHCDARVQTVSADVINLPS--NQVRALSPKQKGF 114 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~--~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~~ 114 (186)
+|+.+|--|++.| ++..+++.+-. .+.+|+.+|.++..++. .....+..+++.|+++... ..++.....-+..
T Consensus 5 ~gK~alITGas~G-IG~aia~~la~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 81 (244)
T d1nffa_ 5 TGKVALVSGGARG-MGASHVRAMVA--EGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGL 81 (244)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 4677777786654 67777766543 27899999998876543 2233567888899887531 1112221112579
Q ss_pred cEEEeCCC
Q 038391 115 SVILSDMC 122 (186)
Q Consensus 115 D~V~~d~~ 122 (186)
|+++.+..
T Consensus 82 dilinnAG 89 (244)
T d1nffa_ 82 HVLVNNAG 89 (244)
T ss_dssp CEEEECCC
T ss_pred eEEEECCc
Confidence 99998864
|