Citrus Sinensis ID: 038395
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 480 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SZT8 | 632 | Pentatricopeptide repeat- | yes | no | 0.995 | 0.756 | 0.644 | 0.0 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.997 | 0.741 | 0.457 | 1e-130 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.981 | 0.638 | 0.462 | 1e-130 | |
| Q683I9 | 573 | Pentatricopeptide repeat- | no | no | 0.991 | 0.830 | 0.462 | 1e-129 | |
| Q9SUH6 | 792 | Pentatricopeptide repeat- | no | no | 0.906 | 0.549 | 0.483 | 1e-129 | |
| Q9FJY7 | 620 | Pentatricopeptide repeat- | no | no | 0.995 | 0.770 | 0.458 | 1e-128 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.910 | 0.589 | 0.493 | 1e-127 | |
| Q9FND7 | 612 | Putative pentatricopeptid | no | no | 0.997 | 0.782 | 0.452 | 1e-127 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.958 | 0.588 | 0.464 | 1e-127 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.906 | 0.626 | 0.470 | 1e-124 |
| >sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/481 (64%), Positives = 395/481 (82%), Gaps = 3/481 (0%)
Query: 2 VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
+KF L D YV+T LVD+YA+GGDV+SA+K+F MP+RSLVS T M+TCYAKQG V AAR
Sbjct: 153 LKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAAR 212
Query: 62 VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQI 120
LFD M E+D+V WNVMIDGYAQHG N+AL+LF+++LAE K +P+E+T VA LSAC QI
Sbjct: 213 ALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQI 272
Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
GALE+GRWIH ++++SR I++NV+V T LI+MYSKCGSL++A LVF+ KD+V WN+M
Sbjct: 273 GALETGRWIHVFVKSSR-IRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAM 331
Query: 181 IVGYAMHGFGKDALQLFNEMCRIR-LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
I GYAMHG+ +DAL+LFNEM I L+P+DITFIG L ACAHAGLVNEG R F +M EY
Sbjct: 332 IAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEY 391
Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
I+PK+EHYGC+V+LL RAGQ++ AY+ + +M ++ DSVLW ++LG+C+LHG+ LG++I
Sbjct: 392 GIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEI 451
Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
AEYLI N+ NSG YVLLSNIYA++G+++GVA+VR LMKEKG+ KEPG S+IE+ NKVHE
Sbjct: 452 AEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHE 511
Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
F AGD H KSKEIY ML +I+ +K+ GYVP T VL D+ E +K+ SL+VHSE+LA+A
Sbjct: 512 FRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIA 571
Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
+GLIST+PG+ +KI KNLRVC DCH V KLISK TGRKI+MRDRNRFHHF +G+CSCGD+
Sbjct: 572 YGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDF 631
Query: 480 W 480
W
Sbjct: 632 W 632
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 467 bits (1201), Expect = e-130, Method: Compositional matrix adjust.
Identities = 226/494 (45%), Positives = 330/494 (66%), Gaps = 15/494 (3%)
Query: 1 TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLF-ATMPQRSLVSLT-------------T 46
+K+ D +V ++LV +Y G + A LF + ++ +V +T
Sbjct: 154 ALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNV 213
Query: 47 MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
M+ Y + G+ AAR+LFD M ++ VV WN MI GY+ +G +A+ +FR M + PN
Sbjct: 214 MIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPN 273
Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
VT V+VL A ++G+LE G W+H Y E+S I+++ +G+ALI+MYSKCG ++ A VF
Sbjct: 274 YVTLVSVLPAISRLGSLELGEWLHLYAEDS-GIRIDDVLGSALIDMYSKCGIIEKAIHVF 332
Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
+R+ ++V+ W++MI G+A+HG DA+ F +M + ++PSD+ +I LL+AC+H GLV
Sbjct: 333 ERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVE 392
Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
EGRR+F+ M +EP++EHYGCMV+LL R+G ++EA + +++M I+PD V+W LLGA
Sbjct: 393 EGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGA 452
Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
CR+ GN+ +G+++A L+ +SG YV LSN+YA+ GNW V+ +R MKEK ++K+P
Sbjct: 453 CRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDP 512
Query: 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQ 406
GCS I++ +HEF+ D HPK+KEI ML EI+ L+ GY P T VL ++ E+ K+
Sbjct: 513 GCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKE 572
Query: 407 NSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRF 466
N L HSEK+A AFGLIST PG I+IVKNLR+C DCH+ KLISK RKI +RDR RF
Sbjct: 573 NVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRF 632
Query: 467 HHFVNGTCSCGDYW 480
HHF +G+CSC DYW
Sbjct: 633 HHFQDGSCSCMDYW 646
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 466 bits (1200), Expect = e-130, Method: Compositional matrix adjust.
Identities = 219/474 (46%), Positives = 321/474 (67%), Gaps = 3/474 (0%)
Query: 9 DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
+L ++ +++D+Y + G + A++LF M ++ V+ TTML YA + AAR + + M
Sbjct: 266 NLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMP 325
Query: 69 EKDVVCWNVMIDGYAQHGLANEALVLFRRM-LAEKVEPNEVTAVAVLSACGQIGALESGR 127
+KD+V WN +I Y Q+G NEAL++F + L + ++ N++T V+ LSAC Q+GALE GR
Sbjct: 326 QKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGR 385
Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
WIHSYI+ I++N V +ALI+MYSKCG L+ +R VF+ V +DV VW++MI G AMH
Sbjct: 386 WIHSYIKK-HGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMH 444
Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
G G +A+ +F +M +KP+ +TF + AC+H GLV+E F+ M+ Y I P+ +H
Sbjct: 445 GCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKH 504
Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
Y C+V++L R+G +E+A K + M I P + +WG LLGAC++H N+ L E L+
Sbjct: 505 YACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELE 564
Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRH 367
N G +VLLSNIYA +G W+ V+ +R M+ G++KEPGCSSIE+ +HEFL+GD H
Sbjct: 565 PRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAH 624
Query: 368 PKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ-KQNSLEVHSEKLAVAFGLISTQ 426
P S+++Y L E+ LK+ GY P+ VL I E++ K+ SL +HSEKLA+ +GLIST+
Sbjct: 625 PMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTE 684
Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
I+++KNLRVC DCH+V KLIS+ R+I++RDR RFHHF NG CSC D+W
Sbjct: 685 APKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 462 bits (1190), Expect = e-129, Method: Compositional matrix adjust.
Identities = 224/484 (46%), Positives = 326/484 (67%), Gaps = 8/484 (1%)
Query: 4 FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
F LDKD +V TSL+++Y+ GD+ SA+++F + L + +++ YAK G + AR L
Sbjct: 91 FGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKL 150
Query: 64 FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-----VEPNEVTAVAVLSACG 118
FD+M E++V+ W+ +I+GY G EAL LFR M K V PNE T VLSACG
Sbjct: 151 FDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACG 210
Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV-NDKDVVVW 177
++GALE G+W+H+YI+ ++++++ +GTALI+MY+KCGSL+ A+ VF+ + + KDV +
Sbjct: 211 RLGALEQGKWVHAYIDKY-HVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAY 269
Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236
++MI AM+G + QLF+EM + P+ +TF+G+L AC H GL+NEG+ +F M
Sbjct: 270 SAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMI 329
Query: 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALG 296
+E+ I P ++HYGCMV+L R+G ++EA + M +EPD ++WG+LL R+ G+I
Sbjct: 330 EEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTC 389
Query: 297 EKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNK 356
E + LI + NSG YVLLSN+YA G W V +R M+ KG+ K PGCS +E+
Sbjct: 390 EGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGV 449
Query: 357 VHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKL 416
VHEF+ GD +S+ IY ML+EI L+ GYV T+ VL D+ EK K+ +L HSEKL
Sbjct: 450 VHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKL 509
Query: 417 AVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSC 476
A+AF L+ T+PGT ++I+KNLR+C DCH V K+ISK R+I++RD NRFHHF +G+CSC
Sbjct: 510 AIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSC 569
Query: 477 GDYW 480
D+W
Sbjct: 570 RDFW 573
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 462 bits (1188), Expect = e-129, Method: Compositional matrix adjust.
Identities = 211/436 (48%), Positives = 295/436 (67%), Gaps = 1/436 (0%)
Query: 45 TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
T + T Y+K E+ +AR LFD+ EK + WN MI GY Q+GL +A+ LFR M +
Sbjct: 358 TALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFS 417
Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
PN VT +LSAC Q+GAL G+W+H + S + + ++ V TALI MY+KCGS+ +AR
Sbjct: 418 PNPVTITCILSACAQLGALSLGKWVHDLVR-STDFESSIYVSTALIGMYAKCGSIAEARR 476
Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
+FD + K+ V WN+MI GY +HG G++AL +F EM + P+ +TF+ +L AC+HAGL
Sbjct: 477 LFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGL 536
Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
V EG FN+M Y EP V+HY CMV++L RAG ++ A + + M IEP S +W TLL
Sbjct: 537 VKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLL 596
Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
GACR+H + L ++E L + N G +VLLSNI++A N+ A VR K++ + K
Sbjct: 597 GACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAK 656
Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
PG + IE+ H F +GD HP+ KEIY LE++ G ++ GY P+T++ LHD+ E++
Sbjct: 657 APGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEE 716
Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
++ ++VHSE+LA+AFGLI+T+PGT I+I+KNLRVC DCH V KLISK T R I++RD N
Sbjct: 717 RELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDAN 776
Query: 465 RFHHFVNGTCSCGDYW 480
RFHHF +G CSCGDYW
Sbjct: 777 RFHHFKDGVCSCGDYW 792
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 459 bits (1181), Expect = e-128, Method: Compositional matrix adjust.
Identities = 220/480 (45%), Positives = 313/480 (65%), Gaps = 2/480 (0%)
Query: 2 VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
K + D+Y SL++ YA G+ A LF +P+ VS +++ Y K G++ A
Sbjct: 142 TKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIAL 201
Query: 62 VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
LF M EK+ + W MI GY Q + EAL LF M VEP+ V+ LSAC Q+G
Sbjct: 202 TLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLG 261
Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
ALE G+WIHSY+ +R I+++ +G LI+MY+KCG +++A VF + K V W ++I
Sbjct: 262 ALEQGKWIHSYLNKTR-IRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALI 320
Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
GYA HG G++A+ F EM ++ +KP+ ITF +L+AC++ GLV EG+ F +M+ +Y +
Sbjct: 321 SGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNL 380
Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
+P +EHYGC+V+LL RAG ++EA + + +M ++P++V+WG LL ACR+H NI LGE+I E
Sbjct: 381 KPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGE 440
Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
LI+ + + G YV +NI+A WD A R LMKE+GV K PGCS+I L HEFL
Sbjct: 441 ILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFL 500
Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHD-IGEKQKQNSLEVHSEKLAVAF 420
AGD HP+ ++I + L+ GYVP+ + +L D + + +++ + HSEKLA+ +
Sbjct: 501 AGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITY 560
Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
GLI T+PGT I+I+KNLRVC DCH V KLISK R I+MRDR RFHHF +G CSCGDYW
Sbjct: 561 GLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 457 bits (1175), Expect = e-127, Method: Compositional matrix adjust.
Identities = 216/438 (49%), Positives = 305/438 (69%), Gaps = 1/438 (0%)
Query: 44 LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
+ ++ Y+K GE+ A LF+ + KDV+ WN +I GY L EAL+LF+ ML
Sbjct: 304 VNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 363
Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENS-RNIKVNVQVGTALINMYSKCGSLKDA 162
PN+VT +++L AC +GA++ GRWIH YI+ + + + T+LI+MY+KCG ++ A
Sbjct: 364 TPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAA 423
Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
VF+ + K + WN+MI G+AMHG + LF+ M +I ++P DITF+GLLSAC+H+
Sbjct: 424 HQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHS 483
Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
G+++ GR F TM +Y + PK+EHYGCM++LL +G +EA +++ M++EPD V+W +
Sbjct: 484 GMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCS 543
Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
LL AC++HGN+ LGE AE LI N G+YVLLSNIYA+ G W+ VA+ R L+ +KG+
Sbjct: 544 LLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGM 603
Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
+K PGCSSIE+ + VHEF+ GD HP+++EIY MLEE+ L+ G+VP T VL ++ E
Sbjct: 604 KKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEE 663
Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
+ K+ +L HSEKLA+AFGLIST+PGT + IVKNLRVC +CH KLISK R+I+ RD
Sbjct: 664 EWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARD 723
Query: 463 RNRFHHFVNGTCSCGDYW 480
R RFHHF +G CSC DYW
Sbjct: 724 RTRFHHFRDGVCSCNDYW 741
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 455 bits (1171), Expect = e-127, Method: Compositional matrix adjust.
Identities = 217/480 (45%), Positives = 326/480 (67%), Gaps = 1/480 (0%)
Query: 1 TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
T++ D D +V T L+ LYA G + S K+F ++P V T M+T A+ G+V A
Sbjct: 134 TIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFA 193
Query: 61 RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
R LF+ M E+D + WN MI GYAQ G + EAL +F M E V+ N V ++VLSAC Q+
Sbjct: 194 RKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQL 253
Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
GAL+ GRW HSYIE ++ IK+ V++ T L+++Y+KCG ++ A VF + +K+V W+S
Sbjct: 254 GALDQGRWAHSYIERNK-IKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSA 312
Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
+ G AM+GFG+ L+LF+ M + + P+ +TF+ +L C+ G V+EG+R F++M++E+
Sbjct: 313 LNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFG 372
Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
IEP++EHYGC+V+L +RAG++E+A ++ M ++P + +W +LL A R++ N+ LG +
Sbjct: 373 IEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLAS 432
Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
+ ++ AN G YVLLSNIYA +WD V+ VR MK KGV+K+PGCS +E++ +VHEF
Sbjct: 433 KKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEF 492
Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
GD HPK +I + ++I+ L+ GY T V+ DI E++K+++L +HSEK A+AF
Sbjct: 493 FVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAF 552
Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
G++S + I+IVKNLRVC DCH V +ISK R+I++RDRNRFHHF +G CSC +W
Sbjct: 553 GIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 454 bits (1168), Expect = e-127, Method: Compositional matrix adjust.
Identities = 214/461 (46%), Positives = 306/461 (66%), Gaps = 1/461 (0%)
Query: 20 YARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMI 79
Y +G + A++LF MP R++ + TM+T YA+ G+++ A+ LFD M ++D V W MI
Sbjct: 322 YVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMI 381
Query: 80 DGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNI 139
GY+Q G + EAL LF +M E N + + LS C + ALE G+ +H +
Sbjct: 382 AGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKG-GY 440
Query: 140 KVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNE 199
+ VG AL+ MY KCGS+++A +F + KD+V WN+MI GY+ HGFG+ AL+ F
Sbjct: 441 ETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFES 500
Query: 200 MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG 259
M R LKP D T + +LSAC+H GLV++GR++F TM +Y + P +HY CMV+LL RAG
Sbjct: 501 MKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAG 560
Query: 260 QVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN 319
+E+A+ L+ +M EPD+ +WGTLLGA R+HGN L E A+ + + NSG YVLLSN
Sbjct: 561 LLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSN 620
Query: 320 IYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEE 379
+YA+ G W V ++R M++KGV+K PG S IE+ NK H F GD HP+ EI+ LEE
Sbjct: 621 LYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEE 680
Query: 380 INGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRV 439
++ +K GYV +T +VLHD+ E++K+ + HSE+LAVA+G++ G I+++KNLRV
Sbjct: 681 LDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRV 740
Query: 440 CPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
C DCH K +++ TGR I++RD NRFHHF +G+CSCGDYW
Sbjct: 741 CEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 444 bits (1141), Expect = e-124, Method: Compositional matrix adjust.
Identities = 207/440 (47%), Positives = 305/440 (69%), Gaps = 5/440 (1%)
Query: 41 LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
L+SL TM YAK G+VA A++LFD M+ +++ WN MI GYA++G A EA+ +F M+
Sbjct: 260 LISLNTM---YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMIN 316
Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
+ V P+ ++ + +SAC Q+G+LE R ++ Y+ S + + +V + +ALI+M++KCGS++
Sbjct: 317 KDVRPDTISITSAISACAQVGSLEQARSMYEYVGRS-DYRDDVFISSALIDMFAKCGSVE 375
Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
ARLVFDR D+DVVVW++MIVGY +HG ++A+ L+ M R + P+D+TF+GLL AC
Sbjct: 376 GARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACN 435
Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
H+G+V EG FFN M D + I P+ +HY C+++LL RAG +++AY+++ M ++P +W
Sbjct: 436 HSGMVREGWWFFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVW 494
Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
G LL AC+ H ++ LGE A+ L S + +N+G YV LSN+YAA WD VA VR MKEK
Sbjct: 495 GALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEK 554
Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
G+ K+ GCS +E+ ++ F GD HP+ +EI +E I LK G+V LHD+
Sbjct: 555 GLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDL 614
Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
+++ + +L HSE++A+A+GLIST GT ++I KNLR C +CHA KLISK R+I++
Sbjct: 615 NDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVV 674
Query: 461 RDRNRFHHFVNGTCSCGDYW 480
RD NRFHHF +G CSCGDYW
Sbjct: 675 RDTNRFHHFKDGVCSCGDYW 694
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 480 | ||||||
| 225438894 | 628 | PREDICTED: pentatricopeptide repeat-cont | 0.995 | 0.761 | 0.768 | 0.0 | |
| 147790932 | 575 | hypothetical protein VITISV_001089 [Viti | 0.995 | 0.831 | 0.766 | 0.0 | |
| 296087368 | 562 | unnamed protein product [Vitis vinifera] | 0.985 | 0.841 | 0.751 | 0.0 | |
| 449448280 | 645 | PREDICTED: pentatricopeptide repeat-cont | 0.995 | 0.741 | 0.728 | 0.0 | |
| 224115100 | 444 | predicted protein [Populus trichocarpa] | 0.925 | 1.0 | 0.773 | 0.0 | |
| 356565531 | 628 | PREDICTED: pentatricopeptide repeat-cont | 0.997 | 0.762 | 0.689 | 0.0 | |
| 15235537 | 632 | Tetratricopeptide repeat (TPR)-like supe | 0.995 | 0.756 | 0.644 | 0.0 | |
| 297798134 | 630 | pentatricopeptide repeat-containing prot | 0.995 | 0.758 | 0.638 | 0.0 | |
| 125557011 | 635 | hypothetical protein OsI_24658 [Oryza sa | 0.995 | 0.752 | 0.625 | 0.0 | |
| 115470299 | 634 | Os07g0113500 [Oryza sativa Japonica Grou | 0.995 | 0.753 | 0.625 | 0.0 |
| >gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/479 (76%), Positives = 421/479 (87%), Gaps = 1/479 (0%)
Query: 2 VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
VK D DLYV T L+D+YARGGDV+SA++LF TMP++SLVSLT MLTCYAK GE+ AAR
Sbjct: 151 VKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAAR 210
Query: 62 VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
VLFD MEE+D VCWNVMIDGY Q+G+ NEALVLFRRML K +PNEVT ++VLSACGQ+G
Sbjct: 211 VLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLG 270
Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
ALESGRW+HSYIEN+ I+ NV VGTAL++MYSKCGSL+DARLVFD+++DKDVV WNSMI
Sbjct: 271 ALESGRWVHSYIENN-GIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMI 329
Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
VGYAMHGF ++ALQLF MCR+ L P++ITFIG+LSAC H+G V EG FN MKDEY I
Sbjct: 330 VGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGI 389
Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
EPK+EHYGCMVNLL RAG VE+AY+LV +M IEPD VLWGTLLGACRLHG IALGEKI E
Sbjct: 390 EPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVE 449
Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
L+ QNLANSGTY+LLSNIYAA+GNWDGVAR+RT+MK+ GV+KEPGCSSIE++NKVHEFL
Sbjct: 450 LLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFL 509
Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
AG L HPK KEIYMMLEEINGWLK+ GY PQT IVLHDIGE +K+ SLEVHSEKLA+AFG
Sbjct: 510 AGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFG 569
Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
LI+TQPGT+IKIVKNLRVC DCH V KLISK TGRKI++RDRNRFHHFVNG+CSCGDYW
Sbjct: 570 LINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 628
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/479 (76%), Positives = 420/479 (87%), Gaps = 1/479 (0%)
Query: 2 VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
VK D DLYV T L+D+YARGGDV+SA++LF TMP++SLVSLT MLTCYAK GE+ AAR
Sbjct: 98 VKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAAR 157
Query: 62 VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
VLFD MEE+D VCWNVMIDGY Q+G+ NEALVLFRRML K +PNEVT ++VLSACGQ+G
Sbjct: 158 VLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLG 217
Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
ALESGRW+HSYIEN+ I+ NV VGTAL++MYSKCGSL+DARLVFD+++DKDVV WNSMI
Sbjct: 218 ALESGRWVHSYIENN-GIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMI 276
Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
VGYAM GF ++ALQLF MCR+ L P++ITFIG+LSAC H+G V EG FN MKDEY I
Sbjct: 277 VGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGI 336
Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
EPK+EHYGCMVNLL RAG VE+AY+LV +M IEPD VLWGTLLGACRLHG IALGEKI E
Sbjct: 337 EPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVE 396
Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
L+ QNLANSGTY+LLSNIYAA+GNWDGVAR+RT+MK+ GV+KEPGCSSIE++NKVHEFL
Sbjct: 397 LLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFL 456
Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
AG L HPK KEIYMMLEEINGWLK+ GY PQT IVLHDIGE +K+ SLEVHSEKLA+AFG
Sbjct: 457 AGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFG 516
Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
LI+TQPGT+IKIVKNLRVC DCH V KLISK TGRKI++RDRNRFHHFVNG+CSCGDYW
Sbjct: 517 LINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 575
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/474 (75%), Positives = 414/474 (87%), Gaps = 1/474 (0%)
Query: 7 DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
+ ++ T+++ +A GDV+SA++LF TMP++SLVSLT MLTCYAK GE+ AARVLFD
Sbjct: 90 NPSVFFWTAIIHGHALRGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDG 149
Query: 67 MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
MEE+D VCWNVMIDGY Q+G+ NEALVLFRRML K +PNEVT ++VLSACGQ+GALESG
Sbjct: 150 MEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESG 209
Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
RW+HSYIEN+ I+ NV VGTAL++MYSKCGSL+DARLVFD+++DKDVV WNSMIVGYAM
Sbjct: 210 RWVHSYIENN-GIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAM 268
Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
HGF ++ALQLF MCR+ L P++ITFIG+LSAC H+G V EG FN MKDEY IEPK+E
Sbjct: 269 HGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIE 328
Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
HYGCMVNLL RAG VE+AY+LV +M IEPD VLWGTLLGACRLHG IALGEKI E L+ Q
Sbjct: 329 HYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQ 388
Query: 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR 366
NLANSGTY+LLSNIYAA+GNWDGVAR+RT+MK+ GV+KEPGCSSIE++NKVHEFLAG L
Sbjct: 389 NLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLN 448
Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ 426
HPK KEIYMMLEEINGWLK+ GY PQT IVLHDIGE +K+ SLEVHSEKLA+AFGLI+TQ
Sbjct: 449 HPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQ 508
Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
PGT+IKIVKNLRVC DCH V KLISK TGRKI++RDRNRFHHFVNG+CSCGDYW
Sbjct: 509 PGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 562
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380, chloroplastic-like [Cucumis sativus] gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/479 (72%), Positives = 404/479 (84%), Gaps = 1/479 (0%)
Query: 2 VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
+K L DLYV T LVD+YARGGDV+ A +LF MP+RSLVSLTTMLTCY+K GE+ AR
Sbjct: 168 IKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKAR 227
Query: 62 VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
LF+ M+E+DVVCWNVMI GYAQ G+ NE+L LFRRML K PNEVT +AVLSACGQ+G
Sbjct: 228 SLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLG 287
Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
ALESGRWIHSYIEN + I++NV VGTALI+MYSKCGSL+DARLVFDR+ DKDVV WNSMI
Sbjct: 288 ALESGRWIHSYIEN-KGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMI 346
Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
VGYAMHGF + ALQLF EM KP+DITFIG+LSAC H GLV EGR FF M+D+Y I
Sbjct: 347 VGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGI 406
Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
EPK+EHYGCMVNLL RAG +EEAY LV +M I D VLWGTLLG CRLH NI LGE+IA+
Sbjct: 407 EPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAK 466
Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
+L+ Q LANSGTYVLLSN+YAA GNW+GVA++RTLMKE G++KE GCSSIE+ NKVHEF+
Sbjct: 467 FLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFV 526
Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
AG+ +HPKSKEIY+ML EIN WLKA GY PQT +VLHD+ E+QK+ SLEVHSEKLA+AFG
Sbjct: 527 AGERKHPKSKEIYVMLNEINSWLKARGYTPQTDVVLHDLREEQKEQSLEVHSEKLAIAFG 586
Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
LIST+PGT++KIVKNLRVC DCH V K+IS+ TGRKI+MRDRNRFHHF +G CSCGDYW
Sbjct: 587 LISTKPGTTVKIVKNLRVCSDCHTVMKMISEITGRKIVMRDRNRFHHFEDGLCSCGDYW 645
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa] gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/445 (77%), Positives = 398/445 (89%), Gaps = 1/445 (0%)
Query: 36 MPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLF 95
MP++SLVSLT M+TCYAK G + ARVLFD +EE+D +CWNVMIDGYAQHGL NE L+LF
Sbjct: 1 MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60
Query: 96 RRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155
R+ML KV PNEVT +AVLSACGQ GALE+GRW+HSYIEN+ I +NV+VGT+LI+MYSK
Sbjct: 61 RQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENN-GIGINVRVGTSLIDMYSK 119
Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
CGSL+DARLVF+R+++KDVV WNSM+VGYAMHGF +DAL+LF EMC I +P+DITFIG+
Sbjct: 120 CGSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGV 179
Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
L+AC+HAGLV+EG +FF +MKDEY IEPKVEHYGCMVNLL RAG +EEAY+LV +M+I+
Sbjct: 180 LNACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQ 239
Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
D VLWGTLLGACRLHGNIALGE+IAEYL+SQNLANSGTYVLLSNIYAA GNW+GVARVRT
Sbjct: 240 DPVLWGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRT 299
Query: 336 LMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQI 395
LMKE G +KEPGCSSIE++NKVHEFLAGDLRHPKS+EIY MLEEINGWLK GY PQT I
Sbjct: 300 LMKESGFEKEPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDI 359
Query: 396 VLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTG 455
VLHD+ + QK+ SL VHSEKLA+AFGLI+T+PGT+IKIVKNLRVC DCHAV KLISK TG
Sbjct: 360 VLHDLEDAQKERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITG 419
Query: 456 RKIMMRDRNRFHHFVNGTCSCGDYW 480
RK++MRDRNRFHHFVNG CSCGDYW
Sbjct: 420 RKVVMRDRNRFHHFVNGLCSCGDYW 444
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/487 (68%), Positives = 402/487 (82%), Gaps = 8/487 (1%)
Query: 1 TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
+KF L LYVST LVD YARGGDV SA+KLF MP+RSLVS T MLTCYAK G + A
Sbjct: 143 AIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEA 202
Query: 61 RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-------KVEPNEVTAVAV 113
RVLF+ M KDVVCWNVMIDGYAQHG NEALV FR+M+ KV PNE+T VAV
Sbjct: 203 RVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAV 262
Query: 114 LSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKD 173
LS+CGQ+GALE G+W+HSY+EN+ IKVNV+VGTAL++MY KCGSL+DAR VFD + KD
Sbjct: 263 LSSCGQVGALECGKWVHSYVENN-GIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKD 321
Query: 174 VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN 233
VV WNSMI+GY +HGF +ALQLF+EMC I +KPSDITF+ +L+ACAHAGLV++G F+
Sbjct: 322 VVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFD 381
Query: 234 TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNI 293
+MKD Y +EPKVEHYGCMVNLL RAG+++EAY LV M++EPD VLWGTLL ACR+H N+
Sbjct: 382 SMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNV 441
Query: 294 ALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIEL 353
+LGE+IAE L+S LA+SGTYVLLSN+YAA NW GVA+VR++MK GV+KEPGCSSIE+
Sbjct: 442 SLGEEIAEILVSNGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEV 501
Query: 354 SNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHS 413
N+VHEF+AGD RHP+SK+IY MLE++NGWLK Y P+T VLHDIGE++K+ SLEVHS
Sbjct: 502 KNRVHEFVAGDRRHPRSKDIYSMLEKMNGWLKERHYTPKTDAVLHDIGEQEKEQSLEVHS 561
Query: 414 EKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGT 473
EKLA+AFGLIST PG +IKIVKNLRVC DCHAV K++SK +GRKI+MRDRNRFHHF NG+
Sbjct: 562 EKLALAFGLISTSPGAAIKIVKNLRVCLDCHAVMKIMSKISGRKIIMRDRNRFHHFENGS 621
Query: 474 CSCGDYW 480
CSC DYW
Sbjct: 622 CSCRDYW 628
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana] gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37380, chloroplastic; Flags: Precursor gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana] gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana] gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/481 (64%), Positives = 395/481 (82%), Gaps = 3/481 (0%)
Query: 2 VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
+KF L D YV+T LVD+YA+GGDV+SA+K+F MP+RSLVS T M+TCYAKQG V AAR
Sbjct: 153 LKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAAR 212
Query: 62 VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQI 120
LFD M E+D+V WNVMIDGYAQHG N+AL+LF+++LAE K +P+E+T VA LSAC QI
Sbjct: 213 ALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQI 272
Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
GALE+GRWIH ++++SR I++NV+V T LI+MYSKCGSL++A LVF+ KD+V WN+M
Sbjct: 273 GALETGRWIHVFVKSSR-IRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAM 331
Query: 181 IVGYAMHGFGKDALQLFNEMCRIR-LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
I GYAMHG+ +DAL+LFNEM I L+P+DITFIG L ACAHAGLVNEG R F +M EY
Sbjct: 332 IAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEY 391
Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
I+PK+EHYGC+V+LL RAGQ++ AY+ + +M ++ DSVLW ++LG+C+LHG+ LG++I
Sbjct: 392 GIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEI 451
Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
AEYLI N+ NSG YVLLSNIYA++G+++GVA+VR LMKEKG+ KEPG S+IE+ NKVHE
Sbjct: 452 AEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHE 511
Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
F AGD H KSKEIY ML +I+ +K+ GYVP T VL D+ E +K+ SL+VHSE+LA+A
Sbjct: 512 FRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIA 571
Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
+GLIST+PG+ +KI KNLRVC DCH V KLISK TGRKI+MRDRNRFHHF +G+CSCGD+
Sbjct: 572 YGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDF 631
Query: 480 W 480
W
Sbjct: 632 W 632
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/481 (63%), Positives = 396/481 (82%), Gaps = 3/481 (0%)
Query: 2 VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
+KF L D YV+T LVD+YA+GGDV+SA+K+F MP+RSLVS T M+TCYAKQG V AAR
Sbjct: 151 LKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAAR 210
Query: 62 VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQI 120
LFD M E+D+V WNVMIDGY+QHG ++AL+LF+++LA+ K +P+E+T VA LSAC QI
Sbjct: 211 ALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQI 270
Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
GALE+GRWIH ++ +SR I++NV+V TALI+MYSKCGSL++A LVF+ KD+V WN+M
Sbjct: 271 GALETGRWIHVFVNSSR-IRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAM 329
Query: 181 IVGYAMHGFGKDALQLFNEMCRIR-LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
I GYAMHG+ +DAL+LF+EM I L+P+DITFIG L ACAHAGLVNEG + F +M EY
Sbjct: 330 ITGYAMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEY 389
Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
I+PK+EHYGC+V+LL RAGQ++ AY+++ +M +E DSVLW ++LG+C+LHG LG++I
Sbjct: 390 GIKPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEI 449
Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
AEYLI QN++NSG YVLLSNIYA +G+++GVA+VR LMKEKG+ KEPG S+IE+ NKVHE
Sbjct: 450 AEYLIGQNISNSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHE 509
Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
F AGD H KSKEIY ML +++ +K+ GYVP T VLHD+ E +K+ SL+VHSE+LA+A
Sbjct: 510 FRAGDREHLKSKEIYTMLRKMSERIKSHGYVPNTNTVLHDLEETEKERSLQVHSERLAIA 569
Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
+GLIST+PG+ +KI KNLRVC DCH V KLISK TGRKI+MRDRNRFHHF +G+CSC D+
Sbjct: 570 YGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFSDGSCSCDDF 629
Query: 480 W 480
W
Sbjct: 630 W 630
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 299/478 (62%), Positives = 382/478 (79%)
Query: 3 KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
K +L D YV+T+L+ +YARGGD +A LF MP +V +T MLTCYAK G + AR
Sbjct: 158 KLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARE 217
Query: 63 LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
LFD M KD +CWN MIDGY QHG NEAL LFR ML V+P+EV + LSA Q+G
Sbjct: 218 LFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGT 277
Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
ESGRW+HSY++NSR +++N +VGTALI+MY KCGSL+DA VF+ + DKD+VVWN+MI
Sbjct: 278 AESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMIN 337
Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
GYAMHG + AL++F+++ L P+DITFIGLL+AC+H+GLV+EG +FF +M++EYAI
Sbjct: 338 GYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIV 397
Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
PK+EHYGCMV+LL RAG +EEA+ LV M I PD+V+W +LL ACRLH N+ALG++IA+Y
Sbjct: 398 PKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADY 457
Query: 303 LISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLA 362
L++ LANSG Y+LLSNIYAA+GNW+ VARVR++MK G+QKEPGCS+IE+ KV+EF+A
Sbjct: 458 LVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVA 517
Query: 363 GDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGL 422
GD+ HP++ EIY MLE++NG +K +G+VPQT++VLHD+ E K+ +L VHSEKLAVAFGL
Sbjct: 518 GDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGL 577
Query: 423 ISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
IST PG +IKIVKNLR C DCHAV KLISK TGRKI+ RDRNRFHHFV+G+C+CGDYW
Sbjct: 578 ISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 635
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group] gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza sativa Japonica Group] gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza sativa Japonica Group] gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group] gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 299/478 (62%), Positives = 382/478 (79%)
Query: 3 KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
K +L D YV+T+L+ +YARGGD +A LF MP +V +T MLTCYAK G + AR
Sbjct: 157 KLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARE 216
Query: 63 LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
LFD M KD +CWN MIDGY QHG NEAL LFR ML V+P+EV + LSA Q+G
Sbjct: 217 LFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGT 276
Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
ESGRW+HSY++NSR +++N +VGTALI+MY KCGSL+DA VF+ + DKD+VVWN+MI
Sbjct: 277 AESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMIN 336
Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
GYAMHG + AL++F+++ L P+DITFIGLL+AC+H+GLV+EG +FF +M++EYAI
Sbjct: 337 GYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIV 396
Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
PK+EHYGCMV+LL RAG +EEA+ LV M I PD+V+W +LL ACRLH N+ALG++IA+Y
Sbjct: 397 PKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADY 456
Query: 303 LISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLA 362
L++ LANSG Y+LLSNIYAA+GNW+ VARVR++MK G+QKEPGCS+IE+ KV+EF+A
Sbjct: 457 LVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVA 516
Query: 363 GDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGL 422
GD+ HP++ EIY MLE++NG +K +G+VPQT++VLHD+ E K+ +L VHSEKLAVAFGL
Sbjct: 517 GDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGL 576
Query: 423 ISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
IST PG +IKIVKNLR C DCHAV KLISK TGRKI+ RDRNRFHHFV+G+C+CGDYW
Sbjct: 577 ISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 634
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 480 | ||||||
| TAIR|locus:2126352 | 632 | AT4G37380 [Arabidopsis thalian | 0.995 | 0.756 | 0.644 | 1.1e-172 | |
| TAIR|locus:4010713776 | 659 | AT3G26782 [Arabidopsis thalian | 0.904 | 0.658 | 0.488 | 5.8e-122 | |
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.981 | 0.638 | 0.462 | 4.1e-120 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.918 | 0.595 | 0.493 | 6.7e-120 | |
| TAIR|locus:2081635 | 573 | AT3G62890 [Arabidopsis thalian | 0.991 | 0.830 | 0.462 | 2.9e-119 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 0.995 | 0.739 | 0.458 | 7.7e-119 | |
| TAIR|locus:1009023396 | 612 | AT5G40405 "AT5G40405" [Arabido | 0.997 | 0.782 | 0.452 | 1.8e-117 | |
| TAIR|locus:2131939 | 792 | MEF29 "AT4G30700" [Arabidopsis | 0.962 | 0.583 | 0.471 | 3.8e-117 | |
| TAIR|locus:2154855 | 620 | AT5G66520 "AT5G66520" [Arabido | 0.993 | 0.769 | 0.459 | 4.9e-117 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.958 | 0.588 | 0.464 | 2.7e-116 |
| TAIR|locus:2126352 AT4G37380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1678 (595.7 bits), Expect = 1.1e-172, P = 1.1e-172
Identities = 310/481 (64%), Positives = 395/481 (82%)
Query: 2 VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
+KF L D YV+T LVD+YA+GGDV+SA+K+F MP+RSLVS T M+TCYAKQG V AAR
Sbjct: 153 LKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAAR 212
Query: 62 VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQI 120
LFD M E+D+V WNVMIDGYAQHG N+AL+LF+++LAE K +P+E+T VA LSAC QI
Sbjct: 213 ALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQI 272
Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
GALE+GRWIH ++++SR I++NV+V T LI+MYSKCGSL++A LVF+ KD+V WN+M
Sbjct: 273 GALETGRWIHVFVKSSR-IRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAM 331
Query: 181 IVGYAMHGFGKDALQLFNEMCRIR-LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
I GYAMHG+ +DAL+LFNEM I L+P+DITFIG L ACAHAGLVNEG R F +M EY
Sbjct: 332 IAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEY 391
Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
I+PK+EHYGC+V+LL RAGQ++ AY+ + +M ++ DSVLW ++LG+C+LHG+ LG++I
Sbjct: 392 GIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEI 451
Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
AEYLI N+ NSG YVLLSNIYA++G+++GVA+VR LMKEKG+ KEPG S+IE+ NKVHE
Sbjct: 452 AEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHE 511
Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
F AGD H KSKEIY ML +I+ +K+ GYVP T VL D+ E +K+ SL+VHSE+LA+A
Sbjct: 512 FRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIA 571
Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
+GLIST+PG+ +KI KNLRVC DCH V KLISK TGRKI+MRDRNRFHHF +G+CSCGD+
Sbjct: 572 YGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDF 631
Query: 480 W 480
W
Sbjct: 632 W 632
|
|
| TAIR|locus:4010713776 AT3G26782 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1112 (396.5 bits), Expect = 5.8e-122, Sum P(2) = 5.8e-122
Identities = 214/438 (48%), Positives = 296/438 (67%)
Query: 46 TMLTCYAKQGE--VAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
T+L YAK GE VA AR +FD + +KD V +N ++ YAQ G++NEA +FRR++ KV
Sbjct: 223 TLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKV 282
Query: 104 EP-NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
N +T VL A GAL G+ IH + ++ +V VGT++I+MY KCG ++ A
Sbjct: 283 VTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRM-GLEDDVIVGTSIIDMYCKCGRVETA 341
Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
R FDR+ +K+V W +MI GY MHG AL+LF M ++P+ ITF+ +L+AC+HA
Sbjct: 342 RKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHA 401
Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
GL EG R+FN MK + +EP +EHYGCMV+LL RAG +++AY L+ MK++PDS++W +
Sbjct: 402 GLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSS 461
Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
LL ACR+H N+ L E L + +N G Y+LLS+IYA G W V RVR +MK +G+
Sbjct: 462 LLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGL 521
Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
K PG S +EL+ +VH FL GD HP+ ++IY L E+N L GYV T V HD+ E
Sbjct: 522 VKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDE 581
Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
++K+ +L VHSEKLA+AFG+++T PG+++ +VKNLRVC DCH V KLISK R+ ++RD
Sbjct: 582 EEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRD 641
Query: 463 RNRFHHFVNGTCSCGDYW 480
RFHHF +G CSCGDYW
Sbjct: 642 AKRFHHFKDGGCSCGDYW 659
|
|
| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1182 (421.1 bits), Expect = 4.1e-120, P = 4.1e-120
Identities = 219/474 (46%), Positives = 321/474 (67%)
Query: 9 DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
+L ++ +++D+Y + G + A++LF M ++ V+ TTML YA + AAR + + M
Sbjct: 266 NLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMP 325
Query: 69 EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-VEPNEVTAVAVLSACGQIGALESGR 127
+KD+V WN +I Y Q+G NEAL++F + +K ++ N++T V+ LSAC Q+GALE GR
Sbjct: 326 QKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGR 385
Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
WIHSYI+ I++N V +ALI+MYSKCG L+ +R VF+ V +DV VW++MI G AMH
Sbjct: 386 WIHSYIKK-HGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMH 444
Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
G G +A+ +F +M +KP+ +TF + AC+H GLV+E F+ M+ Y I P+ +H
Sbjct: 445 GCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKH 504
Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
Y C+V++L R+G +E+A K + M I P + +WG LLGAC++H N+ L E L+
Sbjct: 505 YACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELE 564
Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRH 367
N G +VLLSNIYA +G W+ V+ +R M+ G++KEPGCSSIE+ +HEFL+GD H
Sbjct: 565 PRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAH 624
Query: 368 PKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ-KQNSLEVHSEKLAVAFGLISTQ 426
P S+++Y L E+ LK+ GY P+ VL I E++ K+ SL +HSEKLA+ +GLIST+
Sbjct: 625 PMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTE 684
Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
I+++KNLRVC DCH+V KLIS+ R+I++RDR RFHHF NG CSC D+W
Sbjct: 685 APKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1180 (420.4 bits), Expect = 6.7e-120, P = 6.7e-120
Identities = 218/442 (49%), Positives = 306/442 (69%)
Query: 40 SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
+L + ++ Y+K GE+ A LF+ + KDV+ WN +I GY L EAL+LF+ ML
Sbjct: 300 NLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEML 359
Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ-VGTALINMYSKCGS 158
PN+VT +++L AC +GA++ GRWIH YI+ N + T+LI+MY+KCG
Sbjct: 360 RSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGD 419
Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
++ A VF+ + K + WN+MI G+AMHG + LF+ M +I ++P DITF+GLLSA
Sbjct: 420 IEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSA 479
Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
C+H+G+++ GR F TM +Y + PK+EHYGCM++LL +G +EA +++ M++EPD V
Sbjct: 480 CSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGV 539
Query: 279 LWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338
+W +LL AC++HGN+ LGE AE LI N G+YVLLSNIYA+ G W+ VA+ R L+
Sbjct: 540 IWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLN 599
Query: 339 EKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH 398
+KG++K PGCSSIE+ + VHEF+ GD HP+++EIY MLEE+ L+ G+VP T VL
Sbjct: 600 DKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQ 659
Query: 399 DIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKI 458
++ E+ K+ +L HSEKLA+AFGLIST+PGT + IVKNLRVC +CH KLISK R+I
Sbjct: 660 EMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREI 719
Query: 459 MMRDRNRFHHFVNGTCSCGDYW 480
+ RDR RFHHF +G CSC DYW
Sbjct: 720 IARDRTRFHHFRDGVCSCNDYW 741
|
|
| TAIR|locus:2081635 AT3G62890 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1174 (418.3 bits), Expect = 2.9e-119, P = 2.9e-119
Identities = 224/484 (46%), Positives = 325/484 (67%)
Query: 4 FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
F LDKD +V TSL+++Y+ GD+ SA+++F + L + +++ YAK G + AR L
Sbjct: 91 FGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKL 150
Query: 64 FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-----VEPNEVTAVAVLSACG 118
FD+M E++V+ W+ +I+GY G EAL LFR M K V PNE T VLSACG
Sbjct: 151 FDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACG 210
Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVW 177
++GALE G+W+H+YI+ ++++++ +GTALI+MY+KCGSL+ A+ VF+ + K DV +
Sbjct: 211 RLGALEQGKWVHAYIDKY-HVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAY 269
Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236
++MI AM+G + QLF+EM + P+ +TF+G+L AC H GL+NEG+ +F M
Sbjct: 270 SAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMI 329
Query: 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALG 296
+E+ I P ++HYGCMV+L R+G ++EA + M +EPD ++WG+LL R+ G+I
Sbjct: 330 EEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTC 389
Query: 297 EKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNK 356
E + LI + NSG YVLLSN+YA G W V +R M+ KG+ K PGCS +E+
Sbjct: 390 EGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGV 449
Query: 357 VHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKL 416
VHEF+ GD +S+ IY ML+EI L+ GYV T+ VL D+ EK K+ +L HSEKL
Sbjct: 450 VHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKL 509
Query: 417 AVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSC 476
A+AF L+ T+PGT ++I+KNLR+C DCH V K+ISK R+I++RD NRFHHF +G+CSC
Sbjct: 510 AIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSC 569
Query: 477 GDYW 480
D+W
Sbjct: 570 RDFW 573
|
|
| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1170 (416.9 bits), Expect = 7.7e-119, P = 7.7e-119
Identities = 226/493 (45%), Positives = 330/493 (66%)
Query: 2 VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLF-ATMPQRSLVSLT-------------TM 47
+K+ D +V ++LV +Y G + A LF + ++ +V +T M
Sbjct: 155 LKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVM 214
Query: 48 LTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNE 107
+ Y + G+ AAR+LFD M ++ VV WN MI GY+ +G +A+ +FR M + PN
Sbjct: 215 IDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNY 274
Query: 108 VTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD 167
VT V+VL A ++G+LE G W+H Y E+S I+++ +G+ALI+MYSKCG ++ A VF+
Sbjct: 275 VTLVSVLPAISRLGSLELGEWLHLYAEDS-GIRIDDVLGSALIDMYSKCGIIEKAIHVFE 333
Query: 168 RVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNE 227
R+ ++V+ W++MI G+A+HG DA+ F +M + ++PSD+ +I LL+AC+H GLV E
Sbjct: 334 RLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEE 393
Query: 228 GRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGAC 287
GRR+F+ M +EP++EHYGCMV+LL R+G ++EA + +++M I+PD V+W LLGAC
Sbjct: 394 GRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGAC 453
Query: 288 RLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPG 347
R+ GN+ +G+++A L+ +SG YV LSN+YA+ GNW V+ +R MKEK ++K+PG
Sbjct: 454 RMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPG 513
Query: 348 CSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQN 407
CS I++ +HEF+ D HPK+KEI ML EI+ L+ GY P T VL ++ E+ K+N
Sbjct: 514 CSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKEN 573
Query: 408 SLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFH 467
L HSEK+A AFGLIST PG I+IVKNLR+C DCH+ KLISK RKI +RDR RFH
Sbjct: 574 VLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFH 633
Query: 468 HFVNGTCSCGDYW 480
HF +G+CSC DYW
Sbjct: 634 HFQDGSCSCMDYW 646
|
|
| TAIR|locus:1009023396 AT5G40405 "AT5G40405" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1157 (412.3 bits), Expect = 1.8e-117, P = 1.8e-117
Identities = 217/480 (45%), Positives = 326/480 (67%)
Query: 1 TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
T++ D D +V T L+ LYA G + S K+F ++P V T M+T A+ G+V A
Sbjct: 134 TIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFA 193
Query: 61 RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
R LF+ M E+D + WN MI GYAQ G + EAL +F M E V+ N V ++VLSAC Q+
Sbjct: 194 RKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQL 253
Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
GAL+ GRW HSYIE ++ IK+ V++ T L+++Y+KCG ++ A VF + +K+V W+S
Sbjct: 254 GALDQGRWAHSYIERNK-IKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSA 312
Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
+ G AM+GFG+ L+LF+ M + + P+ +TF+ +L C+ G V+EG+R F++M++E+
Sbjct: 313 LNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFG 372
Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
IEP++EHYGC+V+L +RAG++E+A ++ M ++P + +W +LL A R++ N+ LG +
Sbjct: 373 IEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLAS 432
Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
+ ++ AN G YVLLSNIYA +WD V+ VR MK KGV+K+PGCS +E++ +VHEF
Sbjct: 433 KKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEF 492
Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
GD HPK +I + ++I+ L+ GY T V+ DI E++K+++L +HSEK A+AF
Sbjct: 493 FVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAF 552
Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
G++S + I+IVKNLRVC DCH V +ISK R+I++RDRNRFHHF +G CSC +W
Sbjct: 553 GIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612
|
|
| TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1154 (411.3 bits), Expect = 3.8e-117, P = 3.8e-117
Identities = 221/469 (47%), Positives = 309/469 (65%)
Query: 12 VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
VS L+ +YA G L + L + VS T + T Y+K E+ +AR LFD+ EK
Sbjct: 331 VSGHLMLIYAIHGYCLKSNFL-----SHASVS-TALTTVYSKLNEIESARKLFDESPEKS 384
Query: 72 VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
+ WN MI GY Q+GL +A+ LFR M + PN VT +LSAC Q+GAL G+W+H
Sbjct: 385 LPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHD 444
Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGK 191
+ S + + ++ V TALI MY+KCGS+ +AR +FD + K+ V WN+MI GY +HG G+
Sbjct: 445 LVR-STDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQ 503
Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
+AL +F EM + P+ +TF+ +L AC+HAGLV EG FN+M Y EP V+HY CM
Sbjct: 504 EALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACM 563
Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311
V++L RAG ++ A + + M IEP S +W TLLGACR+H + L ++E L + N
Sbjct: 564 VDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNV 623
Query: 312 GTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSK 371
G +VLLSNI++A N+ A VR K++ + K PG + IE+ H F +GD HP+ K
Sbjct: 624 GYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVK 683
Query: 372 EIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSI 431
EIY LE++ G ++ GY P+T++ LHD+ E++++ ++VHSE+LA+AFGLI+T+PGT I
Sbjct: 684 EIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEI 743
Query: 432 KIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
+I+KNLRVC DCH V KLISK T R I++RD NRFHHF +G CSCGDYW
Sbjct: 744 RIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792
|
|
| TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1153 (410.9 bits), Expect = 4.9e-117, P = 4.9e-117
Identities = 220/479 (45%), Positives = 313/479 (65%)
Query: 3 KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
K + D+Y SL++ YA G+ A LF +P+ VS +++ Y K G++ A
Sbjct: 143 KLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALT 202
Query: 63 LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
LF M EK+ + W MI GY Q + EAL LF M VEP+ V+ LSAC Q+GA
Sbjct: 203 LFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGA 262
Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
LE G+WIHSY+ +R I+++ +G LI+MY+KCG +++A VF + K V W ++I
Sbjct: 263 LEQGKWIHSYLNKTR-IRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALIS 321
Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
GYA HG G++A+ F EM ++ +KP+ ITF +L+AC++ GLV EG+ F +M+ +Y ++
Sbjct: 322 GYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLK 381
Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
P +EHYGC+V+LL RAG ++EA + + +M ++P++V+WG LL ACR+H NI LGE+I E
Sbjct: 382 PTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEI 441
Query: 303 LISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLA 362
LI+ + + G YV +NI+A WD A R LMKE+GV K PGCS+I L HEFLA
Sbjct: 442 LIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLA 501
Query: 363 GDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHD-IGEKQKQNSLEVHSEKLAVAFG 421
GD HP+ ++I + L+ GYVP+ + +L D + + +++ + HSEKLA+ +G
Sbjct: 502 GDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYG 561
Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
LI T+PGT I+I+KNLRVC DCH V KLISK R I+MRDR RFHHF +G CSCGDYW
Sbjct: 562 LIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1146 (408.5 bits), Expect = 2.7e-116, P = 2.7e-116
Identities = 214/461 (46%), Positives = 306/461 (66%)
Query: 20 YARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMI 79
Y +G + A++LF MP R++ + TM+T YA+ G+++ A+ LFD M ++D V W MI
Sbjct: 322 YVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMI 381
Query: 80 DGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNI 139
GY+Q G + EAL LF +M E N + + LS C + ALE G+ +H +
Sbjct: 382 AGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKG-GY 440
Query: 140 KVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNE 199
+ VG AL+ MY KCGS+++A +F + KD+V WN+MI GY+ HGFG+ AL+ F
Sbjct: 441 ETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFES 500
Query: 200 MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG 259
M R LKP D T + +LSAC+H GLV++GR++F TM +Y + P +HY CMV+LL RAG
Sbjct: 501 MKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAG 560
Query: 260 QVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN 319
+E+A+ L+ +M EPD+ +WGTLLGA R+HGN L E A+ + + NSG YVLLSN
Sbjct: 561 LLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSN 620
Query: 320 IYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEE 379
+YA+ G W V ++R M++KGV+K PG S IE+ NK H F GD HP+ EI+ LEE
Sbjct: 621 LYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEE 680
Query: 380 INGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRV 439
++ +K GYV +T +VLHD+ E++K+ + HSE+LAVA+G++ G I+++KNLRV
Sbjct: 681 LDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRV 740
Query: 440 CPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
C DCH K +++ TGR I++RD NRFHHF +G+CSCGDYW
Sbjct: 741 CEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SZT8 | PP354_ARATH | No assigned EC number | 0.6444 | 0.9958 | 0.7563 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 480 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-134 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-128 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-40 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-38 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-37 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-36 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 4e-25 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-21 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-18 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 407 bits (1047), Expect = e-134
Identities = 182/432 (42%), Positives = 270/432 (62%), Gaps = 4/432 (0%)
Query: 47 MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
++ Y+K + A +F ++ EKDV+ W +I G + EAL+ FR+ML ++PN
Sbjct: 430 LIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPN 488
Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
VT +A LSAC +IGAL G+ IH+++ + I + + AL+++Y +CG + A F
Sbjct: 489 SVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQF 547
Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
+ ++KDVV WN ++ GY HG G A++LFN M + P ++TFI LL AC+ +G+V
Sbjct: 548 N-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVT 606
Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
+G +F++M+++Y+I P ++HY C+V+LL RAG++ EAY + M I PD +WG LL A
Sbjct: 607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNA 666
Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
CR+H ++ LGE A+++ + + G Y+LL N+YA G WD VARVR M+E G+ +P
Sbjct: 667 CRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDP 726
Query: 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQ 406
GCS +E+ KVH FL D HP+ KEI +LE +KA G + +I E K
Sbjct: 727 GCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEI-EVSKD 785
Query: 407 NSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRF 466
+ HSE+LA+AFGLI+T PG I + KNL +C +CH K ISK R+I +RD +F
Sbjct: 786 DIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQF 845
Query: 467 HHFVNGTCSCGD 478
HHF +G CSCGD
Sbjct: 846 HHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 386 bits (994), Expect = e-128
Identities = 169/435 (38%), Positives = 257/435 (59%), Gaps = 3/435 (0%)
Query: 47 MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
++ Y+K G++ AR +FD M EK V WN M+ GYA HG + EAL L+ M V +
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324
Query: 107 EVTAVAVLSACGQIGALESGRWIH-SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
+ T ++ ++ LE + H I +++ TAL+++YSK G ++DAR V
Sbjct: 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTG--FPLDIVANTALVDLYSKWGRMEDARNV 382
Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
FDR+ K+++ WN++I GY HG G A+++F M + P+ +TF+ +LSAC ++GL
Sbjct: 383 FDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLS 442
Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
+G F +M + + I+P+ HY CM+ LL R G ++EAY ++ +P +W LL
Sbjct: 443 EQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLT 502
Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
ACR+H N+ LG AE L YV+L N+Y + G A+V +K KG+
Sbjct: 503 ACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562
Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK 405
P C+ IE+ + H F +GD HP+S+EIY L+E+ + GYV + +L D+ E ++
Sbjct: 563 PACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEE 622
Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
+ S HSEKLA+AFGLI+T T ++I ++ R+C DCH V K I+ T R+I++RD +R
Sbjct: 623 KVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASR 682
Query: 466 FHHFVNGTCSCGDYW 480
FHHF G CSCGDYW
Sbjct: 683 FHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (392), Expect = 2e-40
Identities = 88/301 (29%), Positives = 145/301 (48%), Gaps = 33/301 (10%)
Query: 44 LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
+ ++T Y K G+V +AR++FD M +D + WN MI GY ++G E L LF M V
Sbjct: 225 VNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284
Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
+P+ +T +V+SAC +G GR +H Y+ V+V V +LI MY GS +A
Sbjct: 285 DPDLMTITSVISACELLGDERLGREMHGYVV-KTGFAVDVSVCNSLIQMYLSLGSWGEAE 343
Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
VF R+ KD V W +MI GY +G AL+ + M + + P +IT +LSACA G
Sbjct: 344 KVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG 403
Query: 224 LVNEG---------RRFF------NTMKDEYA----IEPKVEHYGCMV--NLLSRAGQVE 262
++ G + N + + Y+ I+ +E + + +++S +
Sbjct: 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA 463
Query: 263 ---------EA--YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311
EA + M + ++P+SV L AC G + G++I +++ +
Sbjct: 464 GLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD 523
Query: 312 G 312
G
Sbjct: 524 G 524
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 1e-38
Identities = 87/305 (28%), Positives = 145/305 (47%), Gaps = 26/305 (8%)
Query: 47 MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
+L + K G + AR LFD+M E+++ W +I G G EA LFR M + +
Sbjct: 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAE 223
Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
T V +L A +G+ +G+ +H + + + + V ALI+MYSKCG ++DAR VF
Sbjct: 224 PRTFVVMLRASAGLGSARAGQQLHCCVLKT-GVVGDTFVSCALIDMYSKCGDIEDARCVF 282
Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC------- 219
D + +K V WNSM+ GYA+HG+ ++AL L+ EM + TF ++
Sbjct: 283 DGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLE 342
Query: 220 ----AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
AHAGL+ G + +V+L S+ G++E+A + V D
Sbjct: 343 HAKQAHAGLIRTG------------FPLDIVANTALVDLYSKWGRMEDA-RNVFDRMPRK 389
Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA-NSGTYVLLSNIYAAIGNWDGVARVR 334
+ + W L+ HG ++ E +I++ +A N T++ + + G + +
Sbjct: 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF 449
Query: 335 TLMKE 339
M E
Sbjct: 450 QSMSE 454
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 4e-37
Identities = 97/332 (29%), Positives = 145/332 (43%), Gaps = 44/332 (13%)
Query: 4 FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLV-------SLTTMLTCYAKQGE 56
S+D DL TS++ GD ++ + + SL M Y G
Sbjct: 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQM---YLSLGS 338
Query: 57 VAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA 116
A +F ME KD V W MI GY ++GL ++AL + M + V P+E+T +VLSA
Sbjct: 339 WGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398
Query: 117 CGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVV 176
C +G L+ G +H E I V V ALI MYSKC + A VF + +KDV+
Sbjct: 399 CACLGDLDVGVKLHELAERKGLISY-VVVANALIEMYSKCKCIDKALEVFHNIPEKDVIS 457
Query: 177 WNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF---- 232
W S+I G ++ +AL F +M + LKP+ +T I LSACA G + G+
Sbjct: 458 WTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516
Query: 233 -----------NTMKDEY--------------AIEPKVEHYGCMVNLLSRAGQ---VEEA 264
N + D Y + E V + ++ G+ E
Sbjct: 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVEL 576
Query: 265 YKLVMDMKIEPDSVLWGTLLGACRLHGNIALG 296
+ +++ + PD V + +LL AC G + G
Sbjct: 577 FNRMVESGVNPDEVTFISLLCACSRSGMVTQG 608
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (356), Expect = 8e-36
Identities = 94/297 (31%), Positives = 149/297 (50%), Gaps = 15/297 (5%)
Query: 2 VKFSLDKDLYVSTSLVDL------YARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQG 55
++ +D+D YV+ L L G V S ++ P + ML+ + + G
Sbjct: 80 LRVPVDEDAYVA--LFRLCEWKRAVEEGSRVCSR--ALSSHPSLGVRLGNAMLSMFVRFG 135
Query: 56 EVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLS 115
E+ A +F M E+D+ WNV++ GYA+ G +EAL L+ RML V P+ T VL
Sbjct: 136 ELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLR 195
Query: 116 ACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV 175
CG I L GR +H+++ +++V V ALI MY KCG + ARLVFDR+ +D +
Sbjct: 196 TCGGIPDLARGREVHAHVVRF-GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCI 254
Query: 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-T 234
WN+MI GY +G + L+LF M + + P +T ++SAC G GR
Sbjct: 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYV 314
Query: 235 MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
+K +A++ V ++ + G EA K+ M+ + D+V W ++ +G
Sbjct: 315 VKTGFAVD--VSVCNSLIQMYLSLGSWGEAEKVFSRMETK-DAVSWTAMISGYEKNG 368
|
Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 4e-25
Identities = 51/130 (39%), Positives = 74/130 (56%), Gaps = 21/130 (16%)
Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK-- 403
PGC E + L+GD HP SKE E+ +K EG VP+T+ + HD+ +
Sbjct: 1 PGCVWSE----GKKTLSGDGSHPTSKE------ELFQRIKVEGVVPETKEIGHDVDAEEF 50
Query: 404 ----QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIM 459
K L H+EK A+A+GL++T+ I R+C DCH F+ I+K+TGR+I+
Sbjct: 51 RDNGIKGKLLASHAEKQALAYGLLTTRI-----IKVLKRMCGDCHEFFRYIAKYTGREII 105
Query: 460 MRDRNRFHHF 469
+RD +RFHHF
Sbjct: 106 VRDPSRFHHF 115
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 96.9 bits (241), Expect = 2e-21
Identities = 73/272 (26%), Positives = 123/272 (45%), Gaps = 42/272 (15%)
Query: 6 LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSL----VSLTTMLTCYAKQGEVAAAR 61
+ D + + ++ +++R + A++ A + + V+ T ++ Y+K G + AR
Sbjct: 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380
Query: 62 VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
+FD M K+++ WN +I GY HG +A+ +F RM+AE V PN VT +AVLSAC G
Sbjct: 381 NVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG 440
Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
E G I + + IK +I + + G L +A
Sbjct: 441 LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA------------------- 481
Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
YAM + R KP+ + LL+AC + GR + Y +
Sbjct: 482 --YAM-------------IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKL---YGM 523
Query: 242 EP-KVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
P K+ +Y ++NL + +G+ EA K+V +K
Sbjct: 524 GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 5e-18
Identities = 72/306 (23%), Positives = 129/306 (42%), Gaps = 45/306 (14%)
Query: 76 NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135
N + HG +AL L M +V +E VA+ C A+E G + S +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQ 195
S + V++G A+++M+ + G L A VF ++ ++D+ WN ++ GYA G+ +AL
Sbjct: 115 SHP-SLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALC 173
Query: 196 LFNEMCRIRLKPSDITFIGLLSACA-----------HAGLVNEG---------------- 228
L++ M ++P TF +L C HA +V G
Sbjct: 174 LYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYV 233
Query: 229 --------RRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDS 277
R F+ M I + M++ G+ E +L M+ ++PD
Sbjct: 234 KCGDVVSARLVFDRMPRRDCIS-----WNAMISGYFENGECLEGLELFFTMRELSVDPDL 288
Query: 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLA-NSGTYVLLSNIYAAIGNWDGVARVRTL 336
+ +++ AC L G+ LG ++ Y++ A + L +Y ++G+W +V +
Sbjct: 289 MTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR 348
Query: 337 MKEKGV 342
M+ K
Sbjct: 349 METKDA 354
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 4e-14
Identities = 70/307 (22%), Positives = 128/307 (41%), Gaps = 58/307 (18%)
Query: 45 TTMLTCYAKQGEVAAARVLFDDME----EKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
TT+++ AK G+V A +F +M E +V + +IDG A+ G +A + M +
Sbjct: 476 TTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535
Query: 101 EKVEPNEVTAVAVLSACGQIG--------------------------------------- 121
+ V+P+ V A++SACGQ G
Sbjct: 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595
Query: 122 --ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV---V 176
A E + IH Y NIK +V T +N S+ G A ++D + K V V
Sbjct: 596 DRAKEVYQMIHEY-----NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650
Query: 177 WNSMIVGYAMH-GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM 235
+ S +V A H G A ++ + + +K +++ L+ AC++A + + +
Sbjct: 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710
Query: 236 KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGN 292
K + P V ++ L Q+ +A +++ +MK + P+++ + LL A +
Sbjct: 711 K-SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDD 769
Query: 293 IALGEKI 299
+G +
Sbjct: 770 ADVGLDL 776
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 3e-10
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
DVV +N++I GY G ++AL+LFNEM + +KP+ T+ L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.7 bits (133), Expect = 5e-10
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 70 KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
DVV +N +IDGY + G EAL LF M ++PN T ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 3e-08
Identities = 43/180 (23%), Positives = 71/180 (39%), Gaps = 42/180 (23%)
Query: 205 LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE- 263
LK + L+S CA +G V+ F+ M +E V +G +++ +RAGQV +
Sbjct: 468 LKADCKLYTTLISTCAKSGKVDAMFEVFHEM-VNAGVEANVHTFGALIDGCARAGQVAKA 526
Query: 264 --AYKLVMDMKIEPDSVLWGTLLGACRLHGNIA-----LGEKIAEY------------LI 304
AY ++ ++PD V++ L+ AC G + L E AE L+
Sbjct: 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALM 586
Query: 305 S---------------QNLANSG------TYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
Q + Y + N + G+WD + MK+KGV+
Sbjct: 587 KACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK 646
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 4e-08
Identities = 56/235 (23%), Positives = 100/235 (42%), Gaps = 42/235 (17%)
Query: 9 DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
D ++ +L+DLY R G + A F + ++ +VS +LT Y
Sbjct: 523 DGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGY----------------- 564
Query: 69 EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
HG + A+ LF RM+ V P+EVT +++L AC + G + G
Sbjct: 565 --------------VAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610
Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMH 187
+E +I N++ ++++ + G L +A +++ D VW +++ +H
Sbjct: 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIH 670
Query: 188 ---GFGKDALQLFNEMCRIRLKPSDITF-IGLLSACAHAGLVNEGRRFFNTMKDE 238
G+ A Q E L P+ + + I L + A AG +E R TM++
Sbjct: 671 RHVELGELAAQHIFE-----LDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 2e-06
Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 42 VSLTTMLTCYAKQGEVAAARVLFDDMEEK----DVVCWNVMIDGYAQ 84
V+ T++ Y K+G+V A LF++M+++ +V ++++IDG +
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 5e-06
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 73 VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNE 107
V +N +IDG + G EAL LF+ M +EP+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 2e-05
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 73 VCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
V +N +I GY + G EAL LF+ M + V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 5e-05
Identities = 52/247 (21%), Positives = 107/247 (43%), Gaps = 14/247 (5%)
Query: 21 ARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDV----VCWN 76
R DVL+ K +++ ++ A G+V A+ ++ + E ++ +
Sbjct: 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT 618
Query: 77 VMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS 136
+ ++ +Q G + AL ++ M + V+P+EV A++ G G L+ ++++
Sbjct: 619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA---FEILQDA 675
Query: 137 RN--IKVNVQVGTALINMYSKCGSLKDARLVFDRVND----KDVVVWNSMIVGYAMHGFG 190
R IK+ ++L+ S + K A +++ + V N++I
Sbjct: 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL 735
Query: 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGC 250
AL++ +EM R+ L P+ IT+ LL A + G + K++ I+P + C
Sbjct: 736 PKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRC 794
Query: 251 MVNLLSR 257
+ L R
Sbjct: 795 ITGLCLR 801
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 5e-05
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGAC 287
P V Y +++ + G+VEEA KL +MK I+P+ + L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 9e-05
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 71 DVVCWNVMIDGYAQHGLANEALVLFRRM 98
DVV +N +IDG + G +EA+ L M
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 1e-04
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRL 205
V +NS+I GY G ++AL+LF EM +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.004
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 42 VSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVC 74
V+ T++ K G V A LF +M+E+ +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 34.5 bits (80), Expect = 0.004
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 72 VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
+ +N ++ A+ G + AL + M A ++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 480 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.91 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.83 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.82 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.8 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.78 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.77 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.76 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.76 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.75 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.73 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.72 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.68 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.64 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.61 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.6 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.59 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.54 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.54 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.53 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.5 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.49 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.49 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.46 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.44 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.42 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.42 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.4 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.38 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.38 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.38 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.37 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.36 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.35 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.33 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.31 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.3 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.3 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.3 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.28 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.28 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.27 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.26 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.25 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.25 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.23 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.22 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.21 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.19 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.18 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.18 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.11 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.08 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.07 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.06 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.06 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.03 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.02 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.97 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.96 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.93 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.92 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.9 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.89 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.89 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.89 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.88 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.87 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.84 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.82 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.81 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.79 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.78 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.76 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.75 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.74 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.74 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.74 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.68 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.66 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.61 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.59 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.59 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.56 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.56 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.5 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.49 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.49 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.48 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.48 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.47 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.45 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.44 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.44 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.42 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.4 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.39 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.37 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.36 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.35 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.35 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.35 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.35 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.34 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.34 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.32 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.31 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.26 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.22 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.22 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.22 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.21 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.19 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.18 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.17 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.17 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.13 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.13 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.13 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.13 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.1 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.09 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.09 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.09 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.05 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.05 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.03 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.03 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.95 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.94 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 97.93 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.91 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.88 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.86 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.84 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.84 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.82 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.78 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.78 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.78 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.75 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.74 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.74 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.71 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.61 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.6 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.59 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.51 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.5 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.5 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.49 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.48 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.47 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.45 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.45 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.43 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.43 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.42 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.41 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.4 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.37 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.37 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.35 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.34 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.34 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.33 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.31 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.26 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.25 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.23 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.22 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.22 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.21 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.17 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.16 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.14 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.13 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.13 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.13 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.13 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.08 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.08 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.01 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.99 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.96 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.95 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.94 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.92 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.92 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.91 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.91 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.89 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.86 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.79 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.76 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.67 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.64 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.58 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.56 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.53 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.52 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.45 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.44 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.41 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.4 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.35 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.34 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.27 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.21 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.14 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.93 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.89 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.81 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.74 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.73 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.71 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.65 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.52 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.47 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.46 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.42 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.41 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.18 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.16 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.16 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.01 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.97 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.92 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.88 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.81 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 94.78 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.69 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.67 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.66 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.64 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.55 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.17 | |
| PRK09687 | 280 | putative lyase; Provisional | 94.12 | |
| PRK09687 | 280 | putative lyase; Provisional | 94.1 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.0 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.77 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.5 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.46 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.46 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.36 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.34 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.19 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 93.14 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 93.07 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.03 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.02 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.89 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.88 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.83 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.51 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 92.49 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 92.12 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.12 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.09 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.96 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.74 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.63 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.34 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.03 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.97 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 90.8 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 90.61 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 90.45 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.32 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.09 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.03 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 89.93 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.69 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 89.66 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 89.55 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 89.48 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 89.47 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.41 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 89.08 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 88.83 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.82 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 88.77 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.75 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.67 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.24 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 87.67 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.66 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 87.6 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 87.41 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 87.41 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 87.35 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 87.31 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 87.27 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.83 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 86.45 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.27 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.7 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.63 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.24 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.06 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 84.93 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 84.73 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.71 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 84.6 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 84.27 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 83.65 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 83.47 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 83.24 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 82.23 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 82.09 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 81.57 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 81.22 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 81.19 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 81.02 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 80.8 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 80.58 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 80.13 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-108 Score=853.45 Aligned_cols=478 Identities=37% Similarity=0.706 Sum_probs=461.1
Q ss_pred eeecCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHH------------------------------
Q 038395 2 VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCY------------------------------ 51 (480)
Q Consensus 2 ~~~g~~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~------------------------------ 51 (480)
++.|+.||..+||.|+.+|+++|+++.|.++|++|++||+++||++|.+|
T Consensus 150 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ 229 (697)
T PLN03081 150 ESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVV 229 (697)
T ss_pred HHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHH
Confidence 45688899999999999999999999999999999888888888887777
Q ss_pred ----------------------------------------HhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHH
Q 038395 52 ----------------------------------------AKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEA 91 (480)
Q Consensus 52 ----------------------------------------~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 91 (480)
+++|++++|.++|+.|+++|+++||+||.+|++.|++++|
T Consensus 230 ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA 309 (697)
T PLN03081 230 MLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEA 309 (697)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHH
Confidence 4556666666666666778999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 038395 92 LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171 (480)
Q Consensus 92 ~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~ 171 (480)
+++|++|.+.|+.||..||++++.+|++.|++++|.++|..|.+. |++||..++++|+++|+++|++++|.++|++|.+
T Consensus 310 ~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~ 388 (697)
T PLN03081 310 LCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388 (697)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHH
Q 038395 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251 (480)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 251 (480)
+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHH
Q 038395 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVA 331 (480)
Q Consensus 252 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 331 (480)
+++|++.|++++|.+++++|+..|+..+|++|+.+|..+|+++.|..+++++.+.+|++..+|..|+++|++.|+|++|.
T Consensus 469 i~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccCCceeeEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcccCCcceecccchhhhhhhhhh
Q 038395 332 RVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEV 411 (480)
Q Consensus 332 ~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~ 411 (480)
+++++|+++|+++.|++||+++++.+|.|+.|+..||+.+++++.++++..+|++.||+||+.+++|++++++|+..+.+
T Consensus 549 ~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~ 628 (697)
T PLN03081 549 KVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRY 628 (697)
T ss_pred HHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhccCCCCCCeEEEEeeecccCCCcchhhhhccccCceEEEecCCcccccccccccCCCCC
Q 038395 412 HSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480 (480)
Q Consensus 412 ~~e~la~~~~~~~~~~~~~~~~~~~l~~c~~~~~~~~~~s~~~~~~i~~~~~~~~h~~~~g~~s~~~~w 480 (480)
||||||++|||+++|+|.||||+||||+|+|||+|+|+||++.+|+|||||.+|||||+||+|||+|||
T Consensus 629 hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 629 HSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred ccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-101 Score=823.25 Aligned_cols=473 Identities=42% Similarity=0.768 Sum_probs=455.4
Q ss_pred eeecCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHH------------------------------
Q 038395 2 VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCY------------------------------ 51 (480)
Q Consensus 2 ~~~g~~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~------------------------------ 51 (480)
++.|+.||..+||+|+.+|+++|++++|.++|++|.+||+++||++|.+|
T Consensus 315 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ 394 (857)
T PLN03077 315 VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394 (857)
T ss_pred HHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHH
Confidence 46789999999999999999999999999999999998888888888887
Q ss_pred ----------------------------------------HhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHH
Q 038395 52 ----------------------------------------AKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEA 91 (480)
Q Consensus 52 ----------------------------------------~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 91 (480)
+++|++++|.++|++|.++|+++||+||.+|+++|+.++|
T Consensus 395 ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA 474 (857)
T PLN03077 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEA 474 (857)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHH
Confidence 5667777777777777778888999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 038395 92 LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171 (480)
Q Consensus 92 ~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~ 171 (480)
+++|++|.. +++||..||++++.+|++.|+++.+.++|..+.+. |+.+|..++|+|+++|+++|++++|.++|+.+ .
T Consensus 475 ~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~ 551 (857)
T PLN03077 475 LIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-E 551 (857)
T ss_pred HHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc-C
Confidence 999999986 59999999999999999999999999999999999 99999999999999999999999999999999 8
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHH
Q 038395 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251 (480)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 251 (480)
+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+++|+.|+..+|++|
T Consensus 552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999778999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHH
Q 038395 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVA 331 (480)
Q Consensus 252 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 331 (480)
+++|+++|++++|.+++++|+++||..+|++|+.+|..+++.+.|+.+.+++.+++|+++..|..|.++|+..|+|++|.
T Consensus 632 v~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~ 711 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVA 711 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccCCceeeEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcccCCcceecccchhhhhhhhhh
Q 038395 332 RVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEV 411 (480)
Q Consensus 332 ~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~ 411 (480)
++++.|+++|++++||+|||++++++|.|+.|+.+||+.++++..|+++..+|++.||+||+..++++ ++++|+..+++
T Consensus 712 ~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~-~~~~k~~~~~~ 790 (857)
T PLN03077 712 RVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDE-IEVSKDDIFCG 790 (857)
T ss_pred HHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccc-cHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999988844 77889999999
Q ss_pred hhHHHHHHHhccCCCCCCeEEEEeeecccCCCcchhhhhccccCceEEEecCCcccccccccccCCC
Q 038395 412 HSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGD 478 (480)
Q Consensus 412 ~~e~la~~~~~~~~~~~~~~~~~~~l~~c~~~~~~~~~~s~~~~~~i~~~~~~~~h~~~~g~~s~~~ 478 (480)
||||||++|||++||+|+||||+||||+|+|||+++|+||++.+|+|||||.+|||||++|+|||+|
T Consensus 791 hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 791 HSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred ccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-60 Score=502.43 Aligned_cols=406 Identities=24% Similarity=0.376 Sum_probs=352.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 038395 43 SLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122 (480)
Q Consensus 43 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~ 122 (480)
+||+||.+|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|.+|...|+.||..||++++.+|++.|+
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~ 303 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Confidence 34555556677888888888888888899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038395 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202 (480)
Q Consensus 123 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 202 (480)
++.|.++|..+.+. |+.||..+||+|+++|+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++|++|.+
T Consensus 304 ~~~a~~l~~~~~~~-g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 304 ERLGREMHGYVVKT-GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred hHHHHHHHHHHHHh-CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHH
Q 038395 203 IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282 (480)
Q Consensus 203 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 282 (480)
.|+.||..||+.++.+|++.|++++|.++++.|.+. |+.|+..+|++|+++|+++|++++|.++|++|. +||..+|++
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~ 460 (857)
T PLN03077 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTS 460 (857)
T ss_pred hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHH
Confidence 999999999999999999999999999999999964 999999999999999999999999999999997 589999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeeEEeCC-------
Q 038395 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSN------- 355 (480)
Q Consensus 283 li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~------- 355 (480)
+|.+|.+.|+.++|..+|++|.+.-+++..+|..++.+|++.|.++.+.+++..|.+.|+.++.......++.
T Consensus 461 mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~ 540 (857)
T PLN03077 461 IIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540 (857)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH
Confidence 9999999999999999999998766677778888888888888888888888777777776554322111100
Q ss_pred ---------------EEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcccCCcceecccchhhhhhhh---hhhhHHHH
Q 038395 356 ---------------KVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSL---EVHSEKLA 417 (480)
Q Consensus 356 ---------------~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~---~~~~e~la 417 (480)
....++.++..|++.+++.+ ++++|++.|+.||..++...+..+.+.+.+ ....+.+.
T Consensus 541 ~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~----lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 541 NYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVE----LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHH----HHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 00124667778888888887 788899999999999887777666555443 22334455
Q ss_pred HHHhccCCCCCCeEEEEeeecccCCCcchhhhhccccCc
Q 038395 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGR 456 (480)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~l~~c~~~~~~~~~~s~~~~~ 456 (480)
..+|+.++..+.. ++++.+..+|+..+|.++|.+|+.+
T Consensus 617 ~~~gi~P~~~~y~-~lv~~l~r~G~~~eA~~~~~~m~~~ 654 (857)
T PLN03077 617 EKYSITPNLKHYA-CVVDLLGRAGKLTEAYNFINKMPIT 654 (857)
T ss_pred HHhCCCCchHHHH-HHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 5677766655444 6999999999999999999999643
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-59 Score=483.36 Aligned_cols=450 Identities=21% Similarity=0.347 Sum_probs=395.6
Q ss_pred cCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC----CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHH
Q 038395 5 SLDKDLYVSTSLVDLYARGGDVLSAEKLFATMP----QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMID 80 (480)
Q Consensus 5 g~~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 80 (480)
++.||..+|+.++.+|++.++++.|.+++..|. .||+.+||.++.+|+++|++++|.++|++|++||+++||+||.
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~ 197 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIG 197 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHH
Confidence 478999999999999999999999999999986 4899999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHH
Q 038395 81 GYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160 (480)
Q Consensus 81 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 160 (480)
+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+.+++..+.+. |+.+|..++++|+++|+++|+++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~-g~~~d~~~~n~Li~~y~k~g~~~ 276 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT-GVVGDTFVSCALIDMYSKCGDIE 276 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHh-CCCccceeHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcC
Q 038395 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240 (480)
Q Consensus 161 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 240 (480)
+|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+. |
T Consensus 277 ~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g 355 (697)
T PLN03081 277 DARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-G 355 (697)
T ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999965 9
Q ss_pred CcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCchhHHHHHH
Q 038395 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSN 319 (480)
Q Consensus 241 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~ 319 (480)
+.||..+|++|+++|+++|++++|.++|++|. +||..+|++||.+|+++|+.++|.++|++|.+.+. ++..+|..++.
T Consensus 356 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 434 (697)
T PLN03081 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434 (697)
T ss_pred CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999997 58999999999999999999999999999999764 57789999999
Q ss_pred HHHHcCChhHHHHHHHHHHh-CCCccCCceeeEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcccCCcceec
Q 038395 320 IYAAIGNWDGVARVRTLMKE-KGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH 398 (480)
Q Consensus 320 ~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~ 398 (480)
+|.+.|++++|.++|+.|.+ .|+.|+...... ++.++...++.+++++.+ ++.+..||..++..
T Consensus 435 a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~--------li~~l~r~G~~~eA~~~~-------~~~~~~p~~~~~~~ 499 (697)
T PLN03081 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC--------MIELLGREGLLDEAYAMI-------RRAPFKPTVNMWAA 499 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh--------HHHHHHhcCCHHHHHHHH-------HHCCCCCCHHHHHH
Confidence 99999999999999999976 588876544332 456677788888887743 34688899876555
Q ss_pred ccchhhhhhhhhhhhHHHHHHHhccCCCCCCeEEEEeeecccCCCcchhhhhccccCceEEE-------ecCCccccccc
Q 038395 399 DIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM-------RDRNRFHHFVN 471 (480)
Q Consensus 399 ~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~l~~c~~~~~~~~~~s~~~~~~i~~-------~~~~~~h~~~~ 471 (480)
.+..+.+.+.+..-.+-....+++.+...+..+.+++.+..+|+..+|.+++..|..+.+-. .-.+..|.|-.
T Consensus 500 Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~ 579 (697)
T PLN03081 500 LLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFS 579 (697)
T ss_pred HHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEcc
Confidence 45544443332221111122244444444555668888999999999999999998886531 22345566654
Q ss_pred c
Q 038395 472 G 472 (480)
Q Consensus 472 g 472 (480)
|
T Consensus 580 ~ 580 (697)
T PLN03081 580 G 580 (697)
T ss_pred C
Confidence 4
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-57 Score=475.42 Aligned_cols=445 Identities=19% Similarity=0.263 Sum_probs=378.5
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCC----CCChhHHHHHHHHHHhcCCHHHHHHHHhhcC----CCCHHHHHHH
Q 038395 7 DKDLYVSTSLVDLYARGGDVLSAEKLFATMP----QRSLVSLTTMLTCYAKQGEVAAARVLFDDME----EKDVVCWNVM 78 (480)
Q Consensus 7 ~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~l 78 (480)
.||..+||.|+.+|++.|+++.|.++|+.|. .||..+|++||.+|+++|++++|.++|++|. .||..+||+|
T Consensus 434 ~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4999999999999999999999999999997 4899999999999999999999999999998 4899999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh-CCCCCchhHHHHHHHHHHhCC
Q 038395 79 IDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS-RNIKVNVQVGTALINMYSKCG 157 (480)
Q Consensus 79 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~y~~~g 157 (480)
|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+. .|+.||..+|++|+.+|+++|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999999999999862 279999999999999999999
Q ss_pred CHHHHHHHHHhcCC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 038395 158 SLKDARLVFDRVND----KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN 233 (480)
Q Consensus 158 ~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 233 (480)
++++|.++|+.|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999986 57799999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-C
Q 038395 234 TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL-A 309 (480)
Q Consensus 234 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~-~ 309 (480)
.|.+. |+.|+..+|++||++|+++|++++|.++|++| ++.||..+|++||.+|++.|++++|.++|++|.+.+. +
T Consensus 674 eM~k~-G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 674 DARKQ-GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred HHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 99964 99999999999999999999999999999999 7899999999999999999999999999999998764 5
Q ss_pred CchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeeEEeC-------------CEEEEEEeCCC--CCCChHHHH
Q 038395 310 NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELS-------------NKVHEFLAGDL--RHPKSKEIY 374 (480)
Q Consensus 310 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~-------------~~~~~~~~~~~--~~~~~~~~~ 374 (480)
+..+|..|+.+|.+.|++++|.+++++|.+.|+.|+..+....++ ..+..|-.+.. .....+++.
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al 832 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL 832 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHH
Confidence 778999999999999999999999999999999988754433221 00111111100 011123333
Q ss_pred HHHHHHHHHHHHCCcccCCcceecccchhhhhhhhhhhhHHHHHHHhccCCCCCCe--EEEEeeecccCCCcchhhhhcc
Q 038395 375 MMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTS--IKIVKNLRVCPDCHAVFKLISK 452 (480)
Q Consensus 375 ~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~--~~~~~~l~~c~~~~~~~~~~s~ 452 (480)
.++++|.+.|+.||..++...+.-..+.+. ....+.+-..+++.+.+++.. ..+++.+. ..-++|..++..
T Consensus 833 ----~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~-~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~--~~~~~A~~l~~e 905 (1060)
T PLN03218 833 ----MVYRETISAGTLPTMEVLSQVLGCLQLPHD-ATLRNRLIENLGISADSQKQSNLSTLVDGFG--EYDPRAFSLLEE 905 (1060)
T ss_pred ----HHHHHHHHCCCCCCHHHHHHHHHHhccccc-HHHHHHHHHHhccCCCCcchhhhHHHHHhhc--cChHHHHHHHHH
Confidence 388999999999999877665522111111 122344555667666655533 23555441 112579999988
Q ss_pred ccCceEE
Q 038395 453 FTGRKIM 459 (480)
Q Consensus 453 ~~~~~i~ 459 (480)
|..+.|+
T Consensus 906 m~~~Gi~ 912 (1060)
T PLN03218 906 AASLGVV 912 (1060)
T ss_pred HHHcCCC
Confidence 8877554
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-54 Score=450.56 Aligned_cols=379 Identities=18% Similarity=0.266 Sum_probs=352.9
Q ss_pred ecC-CCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCHHHHHHH
Q 038395 4 FSL-DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE----KDVVCWNVM 78 (480)
Q Consensus 4 ~g~-~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~l 78 (480)
.|+ +++..+++.++..|.+.|.+++|.++|+.|+.||..+|+.+|.+|++.|+++.|.++|+.|.+ ||..+||+|
T Consensus 399 ~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsL 478 (1060)
T PLN03218 399 RGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL 478 (1060)
T ss_pred CCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 453 578888999999999999999999999999999999999999999999999999999999974 899999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCC
Q 038395 79 IDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158 (480)
Q Consensus 79 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 158 (480)
|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+. |+.||..+|+.|+.+|++.|+
T Consensus 479 I~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~-Gv~PD~vTYnsLI~a~~k~G~ 557 (1060)
T PLN03218 479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK-NVKPDRVVFNALISACGQSGA 557 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred HHHHHHHHHhcC------CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038395 159 LKDARLVFDRVN------DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232 (480)
Q Consensus 159 ~~~A~~~f~~m~------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 232 (480)
+++|.++|++|. .||.++|++||.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|
T Consensus 558 ~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf 637 (1060)
T PLN03218 558 VDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY 637 (1060)
T ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999995 47999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-
Q 038395 233 NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL- 308 (480)
Q Consensus 233 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~- 308 (480)
+.|.+. |+.||..+|++++++|++.|++++|.+++++| ++.||..+|++||.+|++.|++++|.++|++|.+.+.
T Consensus 638 ~eM~~~-Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~ 716 (1060)
T PLN03218 638 DDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716 (1060)
T ss_pred HHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 999965 99999999999999999999999999999999 7889999999999999999999999999999988653
Q ss_pred CCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeeEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCC
Q 038395 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEG 388 (480)
Q Consensus 309 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g 388 (480)
++..+|+.|+.+|++.|++++|.++|++|.+.|+.|+..+... ++.+....+..+++.+ ++.+|.+.|
T Consensus 717 PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s--------LL~a~~k~G~le~A~~----l~~~M~k~G 784 (1060)
T PLN03218 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI--------LLVASERKDDADVGLD----LLSQAKEDG 784 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH--------HHHHHHHCCCHHHHHH----HHHHHHHcC
Confidence 5678999999999999999999999999999999888765543 3455666788877776 788899999
Q ss_pred cccCCcce
Q 038395 389 YVPQTQIV 396 (480)
Q Consensus 389 ~~pd~~~~ 396 (480)
+.||..++
T Consensus 785 i~pd~~ty 792 (1060)
T PLN03218 785 IKPNLVMC 792 (1060)
T ss_pred CCCCHHHH
Confidence 99997644
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=205.65 Aligned_cols=106 Identities=61% Similarity=1.033 Sum_probs=96.4
Q ss_pred ceeeEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcccCCcceecccchhhh--------hhhhhhhhHHHHH
Q 038395 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK--------QNSLEVHSEKLAV 418 (480)
Q Consensus 347 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~e~la~ 418 (480)
+++|+++ |.|++|+.+||+. ++..++...||.|++..+.|+++++++ +..+..||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6789876 8999999999988 256677889999999999998877655 5688999999999
Q ss_pred HHhccCCCCCCeEEEEeee-cccCCCcchhhhhccccCceEEEecCCcccccc
Q 038395 419 AFGLISTQPGTSIKIVKNL-RVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFV 470 (480)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~l-~~c~~~~~~~~~~s~~~~~~i~~~~~~~~h~~~ 470 (480)
+||++++ +|+||+ |+|+|||+++|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999988 899999 999999999999999999999999999999996
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-21 Score=211.36 Aligned_cols=325 Identities=13% Similarity=0.098 Sum_probs=186.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHH
Q 038395 10 LYVSTSLVDLYARGGDVLSAEKLFATMPQ---RSLVSLTTMLTCYAKQGEVAAARVLFDDMEE---KDVVCWNVMIDGYA 83 (480)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 83 (480)
..+++.+...|.+.|+.++|...|+++.+ .+...+..++..|.+.|++++|..+++.+.+ .+...|..+...|.
T Consensus 533 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (899)
T TIGR02917 533 LRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQL 612 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 33444444444444444444444444421 1233444445555555555555555555432 23445555555555
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHH
Q 038395 84 QHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163 (480)
Q Consensus 84 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 163 (480)
+.|++++|++.|+++.+.. +.+...+..+..++...|++++|..+++.+.+. .+.+...+..++..+.+.|++++|.
T Consensus 613 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 689 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL--KPDNTEAQIGLAQLLLAAKRTESAK 689 (899)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555555432 223444555555555555555555555555542 2334455555555555555555555
Q ss_pred HHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcC
Q 038395 164 LVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240 (480)
Q Consensus 164 ~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 240 (480)
++++.+.+ .+...|..+...+.+.|++++|++.|+++...+ |+..++..+..++.+.|+.++|.+.++.+.+.
T Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-- 765 (899)
T TIGR02917 690 KIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-- 765 (899)
T ss_pred HHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 55555543 244455556666666666666666666665532 33355555666666666666666666666642
Q ss_pred CcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHH
Q 038395 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIE-PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLS 318 (480)
Q Consensus 241 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 318 (480)
.+.+...+..+...|.+.|++++|.+.|+++ ... +++.+++.+...+...|+ ++|...++++.+..|+++..+..+.
T Consensus 766 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~ 844 (899)
T TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLG 844 (899)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 2334556666666777777777777777666 222 346666777777777777 6677777777777777766777777
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCC
Q 038395 319 NIYAAIGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 319 ~~~~~~g~~~~a~~~~~~m~~~~~ 342 (480)
.+|...|++++|.+.++++.+.+.
T Consensus 845 ~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 845 WLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 777777777777777777776553
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-21 Score=208.26 Aligned_cols=325 Identities=11% Similarity=0.055 Sum_probs=288.4
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHH
Q 038395 7 DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ---RSLVSLTTMLTCYAKQGEVAAARVLFDDMEE---KDVVCWNVMID 80 (480)
Q Consensus 7 ~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~ 80 (480)
+.+...+..++..|.+.|++++|..+++.+.. .+..+|..+...|.+.|++++|...|+.+.+ .+...|..+..
T Consensus 564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 643 (899)
T TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAD 643 (899)
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 44567788899999999999999999999863 4678899999999999999999999999864 36778999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHH
Q 038395 81 GYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160 (480)
Q Consensus 81 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 160 (480)
.|.+.|++++|.+.|+++.+.. +.+..++..+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|+++
T Consensus 644 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~ 720 (899)
T TIGR02917 644 AYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYP 720 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHH
Confidence 9999999999999999998853 446788999999999999999999999999875 4667788899999999999999
Q ss_pred HHHHHHHhcCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhh
Q 038395 161 DARLVFDRVND--KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238 (480)
Q Consensus 161 ~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 238 (480)
+|.+.|+.+.. |+..++..++..+.+.|++++|.+.++++.+.. +.+...+..+...|...|+.++|..+|+.+.+.
T Consensus 721 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 721 AAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 99999998864 555778889999999999999999999998863 456788888999999999999999999999853
Q ss_pred cCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHH
Q 038395 239 YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVL 316 (480)
Q Consensus 239 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 316 (480)
-+++...++.+...+.+.|+ ++|+.+++++ ...| +..++..+...+...|++++|...++++++.+|.++.++..
T Consensus 800 --~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 876 (899)
T TIGR02917 800 --APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYH 876 (899)
T ss_pred --CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Confidence 24567889999999999999 8899999988 4444 46778889999999999999999999999999999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHH
Q 038395 317 LSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
++.+|.+.|++++|.+++++|.
T Consensus 877 l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 877 LALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999999999999999986
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-20 Score=183.74 Aligned_cols=294 Identities=11% Similarity=0.058 Sum_probs=237.9
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccC
Q 038395 48 LTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN---EVTAVAVLSACGQIG 121 (480)
Q Consensus 48 i~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~t~~~ll~~~~~~~ 121 (480)
...+...|++++|...|+++.+ | +..+|..+...+.+.|++++|..+++.+...+..++ ..++..+...+.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 4445678899999999999875 3 455788888899999999999999998887532222 245777888888999
Q ss_pred ChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC--------hHHHHHHHHHHHhcCChHHH
Q 038395 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKD--------VVVWNSMIVGYAMHGFGKDA 193 (480)
Q Consensus 122 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~--------~~~~~~li~~~~~~g~~~~A 193 (480)
+++.|..++..+.+. .+.+..+++.++.+|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|++++|
T Consensus 122 ~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 122 LLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 999999999998863 45567788899999999999999999998886421 12456677788899999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC--ccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK--VEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 194 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
...|+++.+.. +.+...+..+...+.+.|++++|.++++.+.+. .|+ ...++.++.+|.+.|++++|.+.++++
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998753 223557777888899999999999999998853 343 456788999999999999999999998
Q ss_pred -CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH---cCChhHHHHHHHHHHhCCCccCCc
Q 038395 272 -KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAA---IGNWDGVARVRTLMKEKGVQKEPG 347 (480)
Q Consensus 272 -~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 347 (480)
...|+...+..+...+...|++++|..+++++++..|++. .+..++..+.. .|+.+++..++++|.+++++++|.
T Consensus 276 ~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 276 LEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 5567877778899999999999999999999999988775 66666666654 568999999999999999999887
Q ss_pred e
Q 038395 348 C 348 (480)
Q Consensus 348 ~ 348 (480)
.
T Consensus 355 ~ 355 (389)
T PRK11788 355 Y 355 (389)
T ss_pred E
Confidence 3
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-19 Score=177.39 Aligned_cols=285 Identities=16% Similarity=0.111 Sum_probs=239.7
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-C------HHHHHHHHHHHHHcC
Q 038395 17 VDLYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEEK-D------VVCWNVMIDGYAQHG 86 (480)
Q Consensus 17 l~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~------~~~~~~li~~~~~~g 86 (480)
...+...|++++|...|.++.+ | +..+|..+...+.+.|++++|..+++.+... + ...|..+...|.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 4456678999999999999974 3 4567899999999999999999999988652 1 246889999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCc----hhHHHHHHHHHHhCCCHHHH
Q 038395 87 LANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN----VQVGTALINMYSKCGSLKDA 162 (480)
Q Consensus 87 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~y~~~g~~~~A 162 (480)
++++|+++|.++.+. -+++..++..++..+...|++++|.+.++.+.+. +-.+. ...+..+...|.+.|++++|
T Consensus 122 ~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 122 LLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL-GGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 999999999999875 2456788999999999999999999999999875 32221 22456778889999999999
Q ss_pred HHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhc
Q 038395 163 RLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239 (480)
Q Consensus 163 ~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 239 (480)
.+.|+++.+ .+...+..+...|.+.|++++|.++|+++...+......++..+..++...|++++|...++.+.+.
T Consensus 200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 999999864 3466888899999999999999999999987643333467888999999999999999999999853
Q ss_pred CCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHh---cCChhHHHHHHHHHHHc
Q 038395 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDSVLWGTLLGACRL---HGNIALGEKIAEYLISQ 306 (480)
Q Consensus 240 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~a~~~---~~~~~~a~~~~~~~~~~ 306 (480)
.|+...+..++..+.+.|++++|..+++++ ...|+..+++.++..+.. .|+.+++..+++++.+.
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 577777889999999999999999999887 667999999988887764 55888999999988873
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5e-17 Score=167.34 Aligned_cols=318 Identities=10% Similarity=-0.046 Sum_probs=257.8
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCCh
Q 038395 15 SLVDLYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQHGLA 88 (480)
Q Consensus 15 ~ll~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~ 88 (480)
.++..+.+.|++++|+.+++.... | +...+..++.+....|++++|...|+++.+ | +...|..+...+.+.|++
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 455667788999999999988753 3 455677777778889999999999999875 4 567888999999999999
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHH
Q 038395 89 NEALVLFRRMLAEKVEP-NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD 167 (480)
Q Consensus 89 ~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 167 (480)
++|++.|+++.+. .| +...+..+..++...|++++|...++.+... .+.+...+..+ ..+...|++++|...++
T Consensus 127 ~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--~P~~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 127 ATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE--VPPRGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CCCCHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 9999999999885 44 5667888888999999999999999988764 23333344333 34788999999999999
Q ss_pred hcCCC----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH----HHHHHHHhhhhc
Q 038395 168 RVNDK----DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNE----GRRFFNTMKDEY 239 (480)
Q Consensus 168 ~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~m~~~~ 239 (480)
.+.+. +...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|+.++ |...|+.+.+
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~-- 278 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ-- 278 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--
Confidence 87653 33344556778889999999999999998764 2346677778888999999986 7899998884
Q ss_pred CCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHH
Q 038395 240 AIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVL 316 (480)
Q Consensus 240 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 316 (480)
..|+ ...+..+...+.+.|++++|...+++. ...|+ ...+..+..++...|++++|...++++.+..|.+...+..
T Consensus 279 -l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 279 -FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred -hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 3454 667888999999999999999999988 44564 6677888899999999999999999999999988766666
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 317 LSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
+..++...|+.++|...+++..+..
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 7888999999999999999886653
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-16 Score=162.89 Aligned_cols=250 Identities=13% Similarity=0.032 Sum_probs=171.3
Q ss_pred CChHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHH
Q 038395 86 GLANEALVLFRRMLAEK-VEP-NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163 (480)
Q Consensus 86 g~~~~A~~~~~~m~~~g-~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 163 (480)
+++++|++.|++....+ ..| +...+..+...+...|++++|...++...+. .+.+...|..+...|...|++++|.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 34555666666655543 223 2345555566666777888888888777753 2334556777777788888888888
Q ss_pred HHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcC
Q 038395 164 LVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240 (480)
Q Consensus 164 ~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 240 (480)
..|++..+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...|+...+.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-- 462 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-- 462 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 88876643 356777778888888888888888888877642 223455666777777888888888888887743
Q ss_pred CcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-h-------HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 038395 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDS-V-------LWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311 (480)
Q Consensus 241 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~-------~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~ 311 (480)
.+.+...++.+...|...|++++|.+.|++. .+.|+. . .++..+..+...|++++|..+++++++.+|++.
T Consensus 463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~ 542 (615)
T TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD 542 (615)
T ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 2233667777888888888888888888775 333321 1 112222233345888888888888888888877
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 312 GTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
..+..++.+|...|++++|.+.|++..+.
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77888888888888888888888877554
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.2e-18 Score=158.70 Aligned_cols=322 Identities=14% Similarity=0.166 Sum_probs=215.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCH------------
Q 038395 10 LYVSTSLVDLYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEE--KDV------------ 72 (480)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~------------ 72 (480)
..+|+.+.+.+-..|++++|+.+++.+.+ | .+..|..+..++...|+.+.|.+.|....+ |+.
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHH
Confidence 45788899999999999999999998865 3 467899999999999999888888877654 322
Q ss_pred -----------------------HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHH
Q 038395 73 -----------------------VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN-EVTAVAVLSACGQIGALESGRW 128 (480)
Q Consensus 73 -----------------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~ 128 (480)
+.|+.|...+-.+|+.-.|+..|++... +.|+ ...|..+...+...+.++.|..
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHH
Confidence 2344444444455555555555555544 2343 2345555555555555555555
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038395 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND--K-DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL 205 (480)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 205 (480)
.+...... -+....++..+...|...|.++.|...+++..+ | -...|+.|..++-..|+..+|.+.|.+....
T Consensus 274 ~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-- 349 (966)
T KOG4626|consen 274 CYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL-- 349 (966)
T ss_pred HHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--
Confidence 55555432 122344445555555566666666666665544 2 2356777777777777777777777776653
Q ss_pred CCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHH
Q 038395 206 KPS-DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWG 281 (480)
Q Consensus 206 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~ 281 (480)
.|+ ....+.|...+...|.+++|..+|....+ +.|. ....+.|...|-+.|++++|...+++. .++|+ ...++
T Consensus 350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~ 426 (966)
T KOG4626|consen 350 CPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALS 426 (966)
T ss_pred CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHH
Confidence 333 34566677777777777777777776652 3444 455677777777777777777777776 66776 56777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 282 ~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
.+...|...|+++.|.+.+.+++..+|.-+.++..|..+|-..|+..+|..-+++..+.
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 77777777777777777777777777777777777777888888888887777776544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.3e-16 Score=158.02 Aligned_cols=316 Identities=8% Similarity=-0.038 Sum_probs=256.0
Q ss_pred HHhcCChHHHHHHHhhCCCC------ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCChHH
Q 038395 20 YARGGDVLSAEKLFATMPQR------SLVSLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQHGLANE 90 (480)
Q Consensus 20 ~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~ 90 (480)
+.+..+++.---.|..-++. +..-...++..+.+.|++++|..+++.... | +...+..++.+....|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 34566777666666665531 223455667788899999999999988764 3 45567777788889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 038395 91 ALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170 (480)
Q Consensus 91 A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 170 (480)
|++.|+++.... +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|...|++++|...++.+.
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 999999999852 335667888888899999999999999999974 45567788899999999999999999998764
Q ss_pred C--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccH
Q 038395 171 D--K-DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247 (480)
Q Consensus 171 ~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 247 (480)
. | +...+..+ ..+.+.|++++|...++.+......++...+..+..++...|+.++|...++.+... -+.+...
T Consensus 172 ~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~ 248 (656)
T PRK15174 172 QEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAAL 248 (656)
T ss_pred HhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHH
Confidence 3 3 33444443 347889999999999999877643445555566677889999999999999999853 1334667
Q ss_pred HHHHHHHHHHcCCHHH----HHHHHHhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 038395 248 YGCMVNLLSRAGQVEE----AYKLVMDM-KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIY 321 (480)
Q Consensus 248 ~~~li~~~~~~g~~~~----A~~~~~~m-~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 321 (480)
+..+...|.+.|++++ |...|++. ...|+ ...+..+...+...|++++|...++++++..|+++..+..+..+|
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 7889999999999986 78899887 55565 778999999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHhCC
Q 038395 322 AAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 322 ~~~g~~~~a~~~~~~m~~~~ 341 (480)
.+.|++++|...++.+.+.+
T Consensus 329 ~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhC
Confidence 99999999999999987754
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-16 Score=151.34 Aligned_cols=301 Identities=15% Similarity=0.169 Sum_probs=254.9
Q ss_pred hcCChHHHHHHHhhCC--CCCh-hHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-HHHHHHHHHHHHHcCChHHHHHHH
Q 038395 22 RGGDVLSAEKLFATMP--QRSL-VSLTTMLTCYAKQGEVAAARVLFDDMEE--KD-VVCWNVMIDGYAQHGLANEALVLF 95 (480)
Q Consensus 22 ~~g~~~~A~~~~~~m~--~~~~-~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~ 95 (480)
..|++++|...+-+.. +|.. ++|+.|...+-..|++..|+.-|++... |+ ...|-.|...|...+.+++|+..|
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y 275 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCY 275 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHH
Confidence 3455555555555433 2332 5788888888999999999999999876 43 458999999999999999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---
Q 038395 96 RRMLAEKVEPN-EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND--- 171 (480)
Q Consensus 96 ~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--- 171 (480)
.+.... .|+ ...+..+...|-..|.++.|...+++.+.. -+.-...|+.|.+++-..|++.+|.+.+.+...
T Consensus 276 ~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p 351 (966)
T KOG4626|consen 276 LRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP 351 (966)
T ss_pred HHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 998874 564 567888888899999999999999999864 233467899999999999999999999998765
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHH
Q 038395 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS-DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYG 249 (480)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 249 (480)
.-..+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|...+++.. .+.|+ ...|+
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~ 426 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALS 426 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHH
Confidence 3557889999999999999999999999887 5555 4578889999999999999999999988 56888 77899
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCh
Q 038395 250 CMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW 327 (480)
Q Consensus 250 ~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 327 (480)
.+...|-..|+.+.|.+.+.+. .+.|. ....+.|...+...|++.+|.+.++..+++.|+.+.+|-.++.+..-..+|
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcc
Confidence 9999999999999999999887 77787 678899999999999999999999999999999999998888887777777
Q ss_pred hHHH
Q 038395 328 DGVA 331 (480)
Q Consensus 328 ~~a~ 331 (480)
.+-.
T Consensus 507 ~D~d 510 (966)
T KOG4626|consen 507 TDYD 510 (966)
T ss_pred cchH
Confidence 6533
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.9e-15 Score=164.63 Aligned_cols=369 Identities=11% Similarity=0.044 Sum_probs=220.7
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC---HHHHHHH---------
Q 038395 16 LVDLYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEE--KD---VVCWNVM--------- 78 (480)
Q Consensus 16 ll~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~---~~~~~~l--------- 78 (480)
+...+...|++++|...|++..+ | +...+..+...|.+.|++++|+..|++..+ |+ ...|..+
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 34555566777777777766542 3 455666666667777777777777666543 21 1122221
Q ss_pred ---HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHH---------
Q 038395 79 ---IDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVG--------- 146 (480)
Q Consensus 79 ---i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------- 146 (480)
...+.+.|++++|++.|++..+.. +.+...+..+...+...|++++|.+.++.+.+. .+.+...+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence 234556666777777776666642 224445555666666666777776666666653 11222221
Q ss_pred ---------------------------------HHHHHHHHhCCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCCh
Q 038395 147 ---------------------------------TALINMYSKCGSLKDARLVFDRVND--K-DVVVWNSMIVGYAMHGFG 190 (480)
Q Consensus 147 ---------------------------------~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~ 190 (480)
..+...+...|++++|.+.|++..+ | +...+..+...|.+.|++
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 1233445567888888888877654 2 455666777778888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhc-------------------------------
Q 038395 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY------------------------------- 239 (480)
Q Consensus 191 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------------------------------- 239 (480)
++|...|+++.+.... +...+..+...+...++.++|...++.+....
T Consensus 512 ~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 8888888877653211 22222222222333444444444443321100
Q ss_pred -------CCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038395 240 -------AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310 (480)
Q Consensus 240 -------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~ 310 (480)
..+++...+..+...|.+.|++++|.+.|++. ...| +...+..+...+...|+.++|+..++.+.+..|++
T Consensus 591 eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~ 670 (1157)
T PRK11447 591 EAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDS 670 (1157)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCC
Confidence 01334556677788888888999988888887 4445 47788888888888899999999999888888888
Q ss_pred chhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeeEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcc
Q 038395 311 SGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYV 390 (480)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 390 (480)
+..+..+..++...|++++|.++++.+.+..-...+......+-. ....-....++.+++...+++. |...|+.
T Consensus 671 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~---~~a~~~~~~G~~~~A~~~y~~A---l~~~~~~ 744 (1157)
T PRK11447 671 LNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLR---DAARFEAQTGQPQQALETYKDA---MVASGIT 744 (1157)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHH---HHHHHHHHcCCHHHHHHHHHHH---HhhcCCC
Confidence 878888888888899999999998888765422222110000000 0000123456677777665544 4455776
Q ss_pred cCCc
Q 038395 391 PQTQ 394 (480)
Q Consensus 391 pd~~ 394 (480)
|+..
T Consensus 745 ~~~p 748 (1157)
T PRK11447 745 PTRP 748 (1157)
T ss_pred CCCC
Confidence 6543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-14 Score=151.38 Aligned_cols=331 Identities=9% Similarity=-0.007 Sum_probs=245.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHH
Q 038395 8 KDLYVSTSLVDLYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDG 81 (480)
Q Consensus 8 ~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~ 81 (480)
.+...+..+..++.+.|++++|..+|++..+ | +...+..++..+...|++++|...+++..+ | +.. |..+...
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~ 125 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYV 125 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH
Confidence 4455688899999999999999999998542 3 566788888899999999999999998764 4 455 8888899
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHH-----------------------------------
Q 038395 82 YAQHGLANEALVLFRRMLAEKVEP-NEVTAVAVLSACGQIGALES----------------------------------- 125 (480)
Q Consensus 82 ~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~----------------------------------- 125 (480)
+...|++++|+..++++.+. .| +...+..+..++...+..+.
T Consensus 126 l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 126 YKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTR 203 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999885 44 34444445555544444443
Q ss_pred -----------HHHHHHHHHHhCCCCCchh-HH----HHHHHHHHhCCCHHHHHHHHHhcCCCC---h-HHHHHHHHHHH
Q 038395 126 -----------GRWIHSYIENSRNIKVNVQ-VG----TALINMYSKCGSLKDARLVFDRVNDKD---V-VVWNSMIVGYA 185 (480)
Q Consensus 126 -----------a~~~~~~~~~~~~~~~~~~-~~----~~li~~y~~~g~~~~A~~~f~~m~~~~---~-~~~~~li~~~~ 185 (480)
|.+.++.+.+.....|+.. .+ ...+..+...|++++|++.|+++...+ . ..--.+...|.
T Consensus 204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl 283 (765)
T PRK10049 204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYL 283 (765)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 3333444443211122211 11 111234457799999999999988642 1 11122567899
Q ss_pred hcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcC----------CcCC---ccHHH
Q 038395 186 MHGFGKDALQLFNEMCRIRLKP---SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA----------IEPK---VEHYG 249 (480)
Q Consensus 186 ~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~~~ 249 (480)
..|++++|+..|+++.+..... .......+..++...|++++|.++++.+..... -.|+ ...+.
T Consensus 284 ~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~ 363 (765)
T PRK10049 284 KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS 363 (765)
T ss_pred hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH
Confidence 9999999999999987643211 124456667788999999999999999885311 0122 12445
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCh
Q 038395 250 CMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW 327 (480)
Q Consensus 250 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 327 (480)
.+...+...|++++|.++++++ ...| +...+..+...+...|++++|++.++++++..|++...+..++..+...|++
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCH
Confidence 6778889999999999999998 3344 5788899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCC
Q 038395 328 DGVARVRTLMKEKG 341 (480)
Q Consensus 328 ~~a~~~~~~m~~~~ 341 (480)
++|..+++.+.+..
T Consensus 444 ~~A~~~~~~ll~~~ 457 (765)
T PRK10049 444 RQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999997653
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-14 Score=159.46 Aligned_cols=320 Identities=14% Similarity=0.111 Sum_probs=237.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCC--CChh-HHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHc
Q 038395 12 VSTSLVDLYARGGDVLSAEKLFATMPQ--RSLV-SLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQH 85 (480)
Q Consensus 12 ~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~ 85 (480)
.+...+..+-.......|...+..... .|.. ........+...|++++|+..|++..+ | +...+..|...|.+.
T Consensus 237 ~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~ 316 (1157)
T PRK11447 237 ALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQ 316 (1157)
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 445555555555556777777766532 1221 123445667889999999999999764 4 678899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHH------------HHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 038395 86 GLANEALVLFRRMLAEKVEP-NEVTA------------VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINM 152 (480)
Q Consensus 86 g~~~~A~~~~~~m~~~g~~p-d~~t~------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 152 (480)
|++++|+..|++..+..... +...+ ......+.+.|++++|...++.+.+. .+.+...+..+..+
T Consensus 317 g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~ 394 (1157)
T PRK11447 317 GDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDV 394 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 99999999999998753221 11111 12234577899999999999999975 45567788889999
Q ss_pred HHhCCCHHHHHHHHHhcCC--C-ChHHHHH------------------------------------------HHHHHHhc
Q 038395 153 YSKCGSLKDARLVFDRVND--K-DVVVWNS------------------------------------------MIVGYAMH 187 (480)
Q Consensus 153 y~~~g~~~~A~~~f~~m~~--~-~~~~~~~------------------------------------------li~~~~~~ 187 (480)
|...|++++|++.|+++.+ | +...+.. +...+...
T Consensus 395 ~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~ 474 (1157)
T PRK11447 395 AMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQ 474 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHC
Confidence 9999999999999998764 2 2323322 23345567
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHH---------------
Q 038395 188 GFGKDALQLFNEMCRIRLKP-SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGC--------------- 250 (480)
Q Consensus 188 g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~--------------- 250 (480)
|++++|++.|++..+. .| +...+..+...+.+.|+.++|...++.+.+. .|+ ...+..
T Consensus 475 g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~---~P~~~~~~~a~al~l~~~~~~~~Al 549 (1157)
T PRK11447 475 GKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ---KPNDPEQVYAYGLYLSGSDRDRAAL 549 (1157)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 8999999999998875 44 4556677888899999999999999998743 232 222222
Q ss_pred -----------------------------HHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHH
Q 038395 251 -----------------------------MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301 (480)
Q Consensus 251 -----------------------------li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~ 301 (480)
+.+.+...|+.++|.++++.-+ ++...+..+...+...|++++|+..++
T Consensus 550 ~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~ 627 (1157)
T PRK11447 550 AHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQ 627 (1157)
T ss_pred HHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2233455566666666666332 345566778888999999999999999
Q ss_pred HHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 302 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
++++..|+++.++..++.+|...|++++|.+.++...+.
T Consensus 628 ~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 628 RVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999987654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.2e-14 Score=146.28 Aligned_cols=325 Identities=11% Similarity=0.009 Sum_probs=251.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHH
Q 038395 9 DLYVSTSLVDLYARGGDVLSAEKLFATMPQ---RSLVSLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGY 82 (480)
Q Consensus 9 d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~ 82 (480)
+.....-.+......|+.++|++++.+... .+...+..+...+.+.|++++|.++|++..+ | +...+..++..+
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l 93 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTL 93 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 344445566778889999999999998764 3445699999999999999999999999643 3 567788999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHH
Q 038395 83 AQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162 (480)
Q Consensus 83 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 162 (480)
...|++++|+..+++..+. .+.+.. +..+..++...|+.++|...++.+.+. .+.+...+..+...+.+.|..+.|
T Consensus 94 ~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHH
Confidence 9999999999999999886 233555 888888899999999999999999974 455666667777788777777766
Q ss_pred HHHHHhcCC---------------------------------------------------CChH-HH----HHHHHHHHh
Q 038395 163 RLVFDRVND---------------------------------------------------KDVV-VW----NSMIVGYAM 186 (480)
Q Consensus 163 ~~~f~~m~~---------------------------------------------------~~~~-~~----~~li~~~~~ 186 (480)
.+.++.... |+.. .+ ...+..+..
T Consensus 170 l~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 170 LGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 655553322 1100 00 011234567
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-----ccHHHHHHHHHHHcCC
Q 038395 187 HGFGKDALQLFNEMCRIRLK-PSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-----VEHYGCMVNLLSRAGQ 260 (480)
Q Consensus 187 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~ 260 (480)
.|++++|+..|+++.+.+.. |+. .-..+..++...|++++|..+|+.+.+. .|. ......+..++.+.|+
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~---~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYH---PETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhc---CCCCCCCChHHHHHHHHHHHhccc
Confidence 78999999999999887532 433 2222567899999999999999998743 232 2345667778899999
Q ss_pred HHHHHHHHHhC-CCCC-------------C---HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 038395 261 VEEAYKLVMDM-KIEP-------------D---SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAA 323 (480)
Q Consensus 261 ~~~A~~~~~~m-~~~p-------------~---~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (480)
+++|.++++.+ ...| + ...+..+...+...|+.++|+..++++....|.++..+..++.++..
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 99999999988 2223 2 23455677788999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhCC
Q 038395 324 IGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 324 ~g~~~~a~~~~~~m~~~~ 341 (480)
.|++++|.+.+++..+..
T Consensus 406 ~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 406 RGWPRAAENELKKAEVLE 423 (765)
T ss_pred cCCHHHHHHHHHHHHhhC
Confidence 999999999999887754
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.9e-14 Score=146.26 Aligned_cols=317 Identities=14% Similarity=0.052 Sum_probs=229.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCC
Q 038395 13 STSLVDLYARGGDVLSAEKLFATMP--QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQHGL 87 (480)
Q Consensus 13 ~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~ 87 (480)
+..+...|.+.|+++.|...|++.. .|+...|..+..+|.+.|++++|++.++...+ | +...|..+..+|...|+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 4455667777788888888887764 36667777777888888888888888877654 3 45577777788888888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCc-------------------------
Q 038395 88 ANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN------------------------- 142 (480)
Q Consensus 88 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------------------- 142 (480)
+++|+.-|......+- .+......++...........+.. ..+. .+++
T Consensus 210 ~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~a~~~~~~----~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 210 YADALLDLTASCIIDG-FRNEQSAQAVERLLKKFAESKAKE----ILET--KPENLPSVTFVGNYLQSFRPKPRPAGLED 282 (615)
T ss_pred HHHHHHHHHHHHHhCC-CccHHHHHHHHHHHHHHHHHHHHH----HHhc--CCCCCCCHHHHHHHHHHccCCcchhhhhc
Confidence 8888877766554321 111111122221111101111111 1110 0010
Q ss_pred -----hhHHHHHHHHH------HhCCCHHHHHHHHHhcCCC------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038395 143 -----VQVGTALINMY------SKCGSLKDARLVFDRVNDK------DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL 205 (480)
Q Consensus 143 -----~~~~~~li~~y------~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 205 (480)
......++..+ ...+++++|.+.|+...+. +...|+.+...+...|++++|+..|++..+.
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l-- 360 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL-- 360 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Confidence 00001111111 1236789999999887642 4567888889999999999999999999874
Q ss_pred CCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHH
Q 038395 206 KPS-DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWG 281 (480)
Q Consensus 206 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~ 281 (480)
.|+ ...|..+...+...|++++|...|+.+.+. .| +...|..+...|...|++++|...|++. ...|+ ...|.
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~ 437 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL---NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI 437 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHH
Confidence 455 557888888899999999999999998843 34 4778889999999999999999999988 55564 67788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 282 ~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
.+...+...|++++|+..++++++..|.++..+..+..+|...|++++|.+.+++..+..
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 888999999999999999999999999999999999999999999999999999987654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-12 Score=138.75 Aligned_cols=227 Identities=11% Similarity=0.017 Sum_probs=179.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CChHHHHHHHHH
Q 038395 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND--KDVVVWNSMIVG 183 (480)
Q Consensus 106 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~ 183 (480)
+...+..+..++.. ++.++|...+...... .|+......+...+...|++++|...|+++.. ++...+..+...
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~a 551 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR---QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANT 551 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 45556666655555 7777888877777654 35544444445555789999999999987754 344567777888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHH
Q 038395 184 YAMHGFGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVE 262 (480)
Q Consensus 184 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 262 (480)
+.+.|+.++|...|++..+.. |+. ..+..+.......|++++|...++...+ ..|+...+..+..++.+.|+++
T Consensus 552 ll~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~d 626 (987)
T PRK09782 552 AQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVP 626 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHH
Confidence 899999999999999988754 433 3333444455567999999999999884 3678888999999999999999
Q ss_pred HHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 263 EAYKLVMDM-KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 263 ~A~~~~~~m-~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
+|...+++. ...|+ ...+..+..++...|+.++|...++++++..|.++..+..+..+|...|++++|...+++..+.
T Consensus 627 eA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 627 AAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999988 55665 6778888889999999999999999999999999999999999999999999999999988765
Q ss_pred C
Q 038395 341 G 341 (480)
Q Consensus 341 ~ 341 (480)
.
T Consensus 707 ~ 707 (987)
T PRK09782 707 I 707 (987)
T ss_pred C
Confidence 4
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-12 Score=137.89 Aligned_cols=324 Identities=14% Similarity=0.063 Sum_probs=251.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C----ChhHHHHHHHHHHhcCC---HHHHHHH----------------
Q 038395 9 DLYVSTSLVDLYARGGDVLSAEKLFATMPQ--R----SLVSLTTMLTCYAKQGE---VAAARVL---------------- 63 (480)
Q Consensus 9 d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~----~~~~~~~li~~~~~~g~---~~~A~~~---------------- 63 (480)
|....-.+.-...+.|+.++|.++|..... + +...-+-++..|.+.+. ..+|..+
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 454 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL 454 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence 455555556666788999999999998754 1 23345577788877766 3333222
Q ss_pred ---------HhhcCC---C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 038395 64 ---------FDDMEE---K--DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129 (480)
Q Consensus 64 ---------f~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~ 129 (480)
+..... + +...|..+..++.. +++.+|+..|.+.... .|+......+..++...|++++|...
T Consensus 455 ~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~ 531 (987)
T PRK09782 455 PGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAA 531 (987)
T ss_pred hhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 111111 2 56678888888877 8999999988888775 57766555555666789999999999
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHH---HHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038395 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS---MIVGYAMHGFGKDALQLFNEMCRIRLK 206 (480)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~ 206 (480)
++.+.. .+|+...+..+...+.+.|++++|...|++..+.+...++. +.......|++++|+..|++..+. .
T Consensus 532 ~rka~~---~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~ 606 (987)
T PRK09782 532 WQKISL---HDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--A 606 (987)
T ss_pred HHHHhc---cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--C
Confidence 998764 35555566777888999999999999999887643333333 333344559999999999999874 5
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHH
Q 038395 207 PSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTL 283 (480)
Q Consensus 207 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 283 (480)
|+...+..+..++.+.|+.++|...++..... .|+ ...++.+...+...|++++|.+.+++. ...| +...+..+
T Consensus 607 P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nL 683 (987)
T PRK09782 607 PSANAYVARATIYRQRHNVPAAVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQL 683 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 77888999999999999999999999999843 555 667788888999999999999999987 5556 47889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 038395 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343 (480)
Q Consensus 284 i~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 343 (480)
..++...|++++|+..++++++..|++..+.........+..+++.|.+.+++-...++.
T Consensus 684 A~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 684 AYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 999999999999999999999999999888888899999999999999988777665553
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=7e-12 Score=130.17 Aligned_cols=322 Identities=11% Similarity=0.047 Sum_probs=224.6
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCChh-HHHHH--HHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCCh
Q 038395 15 SLVDLYARGGDVLSAEKLFATMPQRSLV-SLTTM--LTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQHGLA 88 (480)
Q Consensus 15 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~l--i~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~ 88 (480)
.++..+...|+.++|+..+++...|+.. .+..+ ...|...|++++|+++|+++.+ | |...+..++..|...++.
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~ 152 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG 152 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH
Confidence 6666777777777777777776655332 23333 3456666777777777777764 2 345566666777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHh
Q 038395 89 NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR 168 (480)
Q Consensus 89 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 168 (480)
++|++.+.++... .|+...+..++..+...++..+|.+.++++.+. .+.+...+..++....+.|-...|.++..+
T Consensus 153 ~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 153 GVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred HHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 7777777777654 455555533333333345554577777777763 344556666666666666666555555443
Q ss_pred cCC-----------------------------------------------------CCh-HHHH----HHHHHHHhcCCh
Q 038395 169 VND-----------------------------------------------------KDV-VVWN----SMIVGYAMHGFG 190 (480)
Q Consensus 169 m~~-----------------------------------------------------~~~-~~~~----~li~~~~~~g~~ 190 (480)
-++ |.. ..|. =.+-++...|+.
T Consensus 229 ~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~ 308 (822)
T PRK14574 229 NPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQT 308 (822)
T ss_pred CccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhH
Confidence 321 000 0111 123456678899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcC----CcCCccHHHHHHHHHHHcCCHHHHHH
Q 038395 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA----IEPKVEHYGCMVNLLSRAGQVEEAYK 266 (480)
Q Consensus 191 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~ 266 (480)
.++++.|+.|...|.+....+-..+.++|...+.+++|..++..+....+ ..++......|.-+|...+++++|..
T Consensus 309 ~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~ 388 (822)
T PRK14574 309 ADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQ 388 (822)
T ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHH
Confidence 99999999999888765566888999999999999999999999875422 12334445788999999999999999
Q ss_pred HHHhC-CCC-------------CC---HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhH
Q 038395 267 LVMDM-KIE-------------PD---SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDG 329 (480)
Q Consensus 267 ~~~~m-~~~-------------p~---~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 329 (480)
+++++ ... || ......++..+...|++.+|++.++++....|.|......+.+++...|...+
T Consensus 389 ~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~ 468 (822)
T PRK14574 389 FAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRK 468 (822)
T ss_pred HHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 99988 111 22 22344567778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 038395 330 VARVRTLMKEK 340 (480)
Q Consensus 330 a~~~~~~m~~~ 340 (480)
|.+.++.....
T Consensus 469 A~~~~k~a~~l 479 (822)
T PRK14574 469 AEQELKAVESL 479 (822)
T ss_pred HHHHHHHHhhh
Confidence 99999776544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.9e-15 Score=138.32 Aligned_cols=256 Identities=16% Similarity=0.153 Sum_probs=112.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHh
Q 038395 77 VMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA-VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155 (480)
Q Consensus 77 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~ 155 (480)
.+...+.+.|++++|++++.+......+|+...| ..+...+...++.+.|.+.++.+.+. + +.++..+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~-~-~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS-D-KANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c-ccccccccccccc-cc
Confidence 4466777888899998888665544324544444 44445566788889999998888865 2 2256667777777 68
Q ss_pred CCCHHHHHHHHHhcCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038395 156 CGSLKDARLVFDRVND--KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR-LKPSDITFIGLLSACAHAGLVNEGRRFF 232 (480)
Q Consensus 156 ~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 232 (480)
.+++++|.+++...-+ ++...+..++..+.+.++++++.++++++.... .+++...|..+...+.+.|+.++|...+
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8999999988877643 466778888888999999999999999987533 3456777888888899999999999999
Q ss_pred HHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 038395 233 NTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM--KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309 (480)
Q Consensus 233 ~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~ 309 (480)
+...+. .|+ ....+.++..+...|+.+++.++++.. ..+.|+..|..+..++...|+.++|...+++..+..|+
T Consensus 170 ~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 170 RKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 999854 565 777888999999999999988888776 22356678899999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038395 310 NSGTYVLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 310 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
|+.....++.++...|+.++|.+++++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999987664
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-11 Score=127.10 Aligned_cols=324 Identities=10% Similarity=0.018 Sum_probs=242.3
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCHHHHHHHHHHHHHcCChHHH
Q 038395 17 VDLYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEE--KDVVCWNVMIDGYAQHGLANEA 91 (480)
Q Consensus 17 l~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A 91 (480)
...|...|++++|..+|+++.+ | |...+..++..|...++.++|++.++++.. |+...+-.++..+...++..+|
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHH
Confidence 5688888999999999999875 3 456777888999999999999999999986 4444454444444446667679
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHH------------------------------------------
Q 038395 92 LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI------------------------------------------ 129 (480)
Q Consensus 92 ~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~------------------------------------------ 129 (480)
++.++++.+.. +-+...+..+..+..+.|....|.++
T Consensus 189 L~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 189 LQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 99999999863 22455555666665555543333322
Q ss_pred ------HHHHHHhCCC-CCchhH-HHH---HHHHHHhCCCHHHHHHHHHhcCCC----ChHHHHHHHHHHHhcCChHHHH
Q 038395 130 ------HSYIENSRNI-KVNVQV-GTA---LINMYSKCGSLKDARLVFDRVNDK----DVVVWNSMIVGYAMHGFGKDAL 194 (480)
Q Consensus 130 ------~~~~~~~~~~-~~~~~~-~~~---li~~y~~~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~ 194 (480)
++.+....+- ++.... ..+ .+-++.+.|++.++.+.|+.+... ...+--+...+|...+++++|+
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 2222221122 222112 122 344677889999999999999853 2235567889999999999999
Q ss_pred HHHHHHHHcC-----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcC----------CcCC---ccHHHHHHHHHH
Q 038395 195 QLFNEMCRIR-----LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA----------IEPK---VEHYGCMVNLLS 256 (480)
Q Consensus 195 ~l~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~~~~li~~~~ 256 (480)
.+|+.+.... ..++......|.-++...+++++|..+++.+.+... -.|+ ...+..++..+.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 9999996643 122344467889999999999999999999986311 0122 223455678889
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHH
Q 038395 257 RAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVR 334 (480)
Q Consensus 257 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 334 (480)
..|++.+|++.++++ ...| |...+..+...+...|.+..|++.++.+..++|++..+....+..+...|+|++|..+.
T Consensus 428 ~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 428 ALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999999999999999 3334 78899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCC
Q 038395 335 TLMKEKG 341 (480)
Q Consensus 335 ~~m~~~~ 341 (480)
+.+.+..
T Consensus 508 ~~l~~~~ 514 (822)
T PRK14574 508 DDVISRS 514 (822)
T ss_pred HHHHhhC
Confidence 8876553
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.4e-12 Score=125.28 Aligned_cols=318 Identities=15% Similarity=0.168 Sum_probs=249.4
Q ss_pred HHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCChHHH
Q 038395 18 DLYARGGDVLSAEKLFATMPQ---RSLVSLTTMLTCYAKQGEVAAARVLFDDME---EKDVVCWNVMIDGYAQHGLANEA 91 (480)
Q Consensus 18 ~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A 91 (480)
+.....|++++|.+++.++.. .+...|-+|...|-+.|+.+++...+-... ..|..-|-.+.....+.|++++|
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 333345999999999999875 356889999999999999999998775543 35778999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHH----HHHHHHHHhCCCHHHHHHHHH
Q 038395 92 LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVG----TALINMYSKCGSLKDARLVFD 167 (480)
Q Consensus 92 ~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~li~~y~~~g~~~~A~~~f~ 167 (480)
.-.|.+.++.. +++...+---...|-+.|+...|..-+.++.+. .-+.|..-. -..+..|...++-+.|.+.++
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~-~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQL-DPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh-CCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999873 556666667778899999999999999999975 222222222 334566777788899999988
Q ss_pred hcCC--C---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH--------------------------HHHH
Q 038395 168 RVND--K---DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF--------------------------IGLL 216 (480)
Q Consensus 168 ~m~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--------------------------~~ll 216 (480)
.... . +...+|.++..|.+...++.|......+......+|..-+ ..+.
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 8765 2 4457889999999999999999999888773222222211 1222
Q ss_pred HHHHccCCHHHHHHHHHHhhhhcCC--cCCccHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhcC
Q 038395 217 SACAHAGLVNEGRRFFNTMKDEYAI--EPKVEHYGCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHG 291 (480)
Q Consensus 217 ~a~~~~g~~~~a~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~a~~~~~ 291 (480)
-++.+....+....+......+ .+ .-+...|.-+.++|.+.|++.+|+++|..+ +...+...|-.+...|...|
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 3344555555555555555432 43 334678889999999999999999999998 22235789999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038395 292 NIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
.++.|.+.+++++...|++..+-..|...|...|+.++|.+++..|.
T Consensus 464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999876
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.3e-11 Score=111.23 Aligned_cols=323 Identities=17% Similarity=0.206 Sum_probs=231.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhH-------HHHHHHHH--------------------------HhcCC
Q 038395 10 LYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVS-------LTTMLTCY--------------------------AKQGE 56 (480)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~-------~~~li~~~--------------------------~~~g~ 56 (480)
+.+-|.|+.+-+ .|.+.++.-+++.|.+.++.. .-.|+..| .|.|.
T Consensus 116 V~~E~nL~kmIS-~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKMIS-SREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHHHh-hcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 456788888774 678999999999998654321 11222222 33444
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 038395 57 VAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS 136 (480)
Q Consensus 57 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 136 (480)
+.+ -+|+.. .+...++.+||.+.++-...++|.++|++-.....+.+..+|+.+|.+.+ +..++.+..+|.+.
T Consensus 195 vAd--L~~E~~-PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisq 267 (625)
T KOG4422|consen 195 VAD--LLFETL-PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQ 267 (625)
T ss_pred HHH--HHHhhc-CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHh
Confidence 433 444444 34667899999999999999999999999998888999999999998854 33448899999998
Q ss_pred CCCCCchhHHHHHHHHHHhCCCHHHHHHHHH----hcC----CCChHHHHHHHHHHHhcCChHH-HHHHHHHHHH----c
Q 038395 137 RNIKVNVQVGTALINMYSKCGSLKDARLVFD----RVN----DKDVVVWNSMIVGYAMHGFGKD-ALQLFNEMCR----I 203 (480)
Q Consensus 137 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~----~m~----~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~----~ 203 (480)
.+.||..++|+++...++.|+++.|++.+- +|+ +|...+|..+|..+.+.+++.+ |..++.+.+. .
T Consensus 268 -km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK 346 (625)
T KOG4422|consen 268 -KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGK 346 (625)
T ss_pred -hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccC
Confidence 999999999999999999999888766554 444 4788999999999999888754 4444444443 2
Q ss_pred CCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcC---CcCC---ccHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 038395 204 RLKP----SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA---IEPK---VEHYGCMVNLLSRAGQVEEAYKLVMDM-K 272 (480)
Q Consensus 204 g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~---~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 272 (480)
.++| |...|...+..|.+..+.+.|.++..-+....+ +.|+ ..-|..+.++.++...++.-...++.| |
T Consensus 347 ~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP 426 (625)
T KOG4422|consen 347 TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP 426 (625)
T ss_pred cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2333 456678889999999999999998776653211 2233 234677888888999999999999998 2
Q ss_pred --CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHc---------------------CCCCc------------------
Q 038395 273 --IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ---------------------NLANS------------------ 311 (480)
Q Consensus 273 --~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~---------------------~~~~~------------------ 311 (480)
.-|+..+...+++|.-..+.++-.-+++..++.. .|..+
T Consensus 427 ~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e 506 (625)
T KOG4422|consen 427 SAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKE 506 (625)
T ss_pred ceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 3477777777888777777666544444433321 22212
Q ss_pred ----------------hhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 312 ----------------GTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 312 ----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
......+-.+.+.|+.++|.+++..+.+++
T Consensus 507 ~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 507 AYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred HHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 123345556778999999999998886554
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-11 Score=118.04 Aligned_cols=275 Identities=11% Similarity=0.057 Sum_probs=208.4
Q ss_pred cCCHHHHHHHHhhcCCC--CHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCChHHHHH
Q 038395 54 QGEVAAARVLFDDMEEK--DVV-CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAV--AVLSACGQIGALESGRW 128 (480)
Q Consensus 54 ~g~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~--~ll~~~~~~~~~~~a~~ 128 (480)
.|+++.|++.+...++. +.. .|-.......+.|++++|.+.|.++.+. .|+..... .....+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 69999999999887653 223 3333344457899999999999999874 56654433 33567888999999999
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC---h--------HHHHHHHHHHHhcCChHHHHHHH
Q 038395 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKD---V--------VVWNSMIVGYAMHGFGKDALQLF 197 (480)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~--------~~~~~li~~~~~~g~~~~A~~l~ 197 (480)
.++...+. .+.+..+...+...|.+.|++++|.+++..+.+.. . .+|..++.......+.+...+++
T Consensus 175 ~l~~~~~~--~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 175 GVDKLLEV--APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999874 46678888999999999999999999999887531 1 13344444444445556666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 038395 198 NEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD 276 (480)
Q Consensus 198 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 276 (480)
+.+-+. .+.+......+..++...|+.++|..+++...+. .|+... .++.+....++.+++.+.++.. ...|+
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 665332 3456778888999999999999999999888753 444422 2233334569999999999887 44564
Q ss_pred -HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 038395 277 -SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 277 -~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
+.....+...|...+++++|.+.|+.+.+..|++ ..+..+..++.+.|+.++|.+.+++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6677888999999999999999999999999876 4678999999999999999999987643
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.5e-11 Score=116.36 Aligned_cols=276 Identities=13% Similarity=0.011 Sum_probs=216.1
Q ss_pred cCChHHHHHHHhhCCCC--ChhH-HHHHHHHHHhcCCHHHHHHHHhhcCC--CCHHHHH--HHHHHHHHcCChHHHHHHH
Q 038395 23 GGDVLSAEKLFATMPQR--SLVS-LTTMLTCYAKQGEVAAARVLFDDMEE--KDVVCWN--VMIDGYAQHGLANEALVLF 95 (480)
Q Consensus 23 ~g~~~~A~~~~~~m~~~--~~~~-~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~--~li~~~~~~g~~~~A~~~~ 95 (480)
.|+++.|++.+...++. ++.. |.....+..+.|+++.|...|.++.+ |+....- .....+...|++++|++.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 59999999999887653 2333 33334444899999999999999876 4433222 3366889999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCch-------hHHHHHHHHHHhCCCHHHHHHHHHh
Q 038395 96 RRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNV-------QVGTALINMYSKCGSLKDARLVFDR 168 (480)
Q Consensus 96 ~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~y~~~g~~~~A~~~f~~ 168 (480)
+++.+.. +-+...+..+...+.+.|+++.+..++..+.+. +..++. .+|..++....+..+.+...++++.
T Consensus 177 ~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~-~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 177 DKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKA-HVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 9998864 336678888899999999999999999999987 433222 2334445545555667778888888
Q ss_pred cCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCc
Q 038395 169 VND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV 245 (480)
Q Consensus 169 m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 245 (480)
++. .+......+...+...|+.++|.+++++..+. .||... .++.+....++.+++.+..+...+.+ +-|+
T Consensus 255 lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~--P~~~ 328 (398)
T PRK10747 255 QSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH--GDTP 328 (398)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC--CCCH
Confidence 765 47788899999999999999999999998874 455422 23344456699999999999988652 3345
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038395 246 EHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306 (480)
Q Consensus 246 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~ 306 (480)
....++...+.+.|++++|.+.|+.. ...|+...+..+...+...|+.++|.+++++.+.+
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66889999999999999999999998 77899999999999999999999999999998764
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-10 Score=114.17 Aligned_cols=277 Identities=12% Similarity=0.058 Sum_probs=152.8
Q ss_pred hcCCHHHHHHHHhhcCC--CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCChHHHH
Q 038395 53 KQGEVAAARVLFDDMEE--KD-VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNE--VTAVAVLSACGQIGALESGR 127 (480)
Q Consensus 53 ~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~~~~~~~~~~~a~ 127 (480)
..|+++.|.+.+.+..+ |+ ...+-.....+.+.|++++|.+.|.+..+. .|+. .............|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 46677777776666543 22 223333345555667777777777666553 2333 22233355566667777777
Q ss_pred HHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChHHHH----HHHHHHHhcCChHHHHHHHHHH
Q 038395 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK---DVVVWN----SMIVGYAMHGFGKDALQLFNEM 200 (480)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~----~li~~~~~~g~~~~A~~l~~~m 200 (480)
..++.+.+. .|.+..+...+...|...|++++|.+.+....+. +...+. ....++...+..+++.+.+..+
T Consensus 174 ~~l~~l~~~--~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEM--APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 777776653 2445556666667777777777777766666532 222221 1111112223333333444444
Q ss_pred HHcCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHH-HHHHHHH--HHcCCHHHHHHHHHhC-CC
Q 038395 201 CRIRL---KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY-GCMVNLL--SRAGQVEEAYKLVMDM-KI 273 (480)
Q Consensus 201 ~~~g~---~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~li~~~--~~~g~~~~A~~~~~~m-~~ 273 (480)
..... +.+...+..+...+...|+.++|.+.++...+. .|+.... -.++..+ ...++.+.+.+.+++. ..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 43211 125556666666777777777777777776643 3433210 0122222 2345666666666555 33
Q ss_pred CCC-H--hHHHHHHHHHHhcCChhHHHHHHH--HHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 038395 274 EPD-S--VLWGTLLGACRLHGNIALGEKIAE--YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337 (480)
Q Consensus 274 ~p~-~--~~~~~li~a~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 337 (480)
.|+ + ....++...+.+.|++++|.+.|+ ...+..|++. .+..+...+.+.|+.++|.+++++-
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333 2 455566777777777777777777 3444555543 4557777777777777777777664
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-13 Score=128.67 Aligned_cols=250 Identities=14% Similarity=0.150 Sum_probs=66.1
Q ss_pred HHHHHhcCChHHHHHHHhhC-CC----CChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCCh
Q 038395 17 VDLYARGGDVLSAEKLFATM-PQ----RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK---DVVCWNVMIDGYAQHGLA 88 (480)
Q Consensus 17 l~~~~~~g~~~~A~~~~~~m-~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~ 88 (480)
..++.+.|++++|+++++.. .. .|..-|..+.......++++.|.+.++++... +...+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 44555555555555555321 11 12333444444444455555555555555432 12234444443 445555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHh
Q 038395 89 NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR 168 (480)
Q Consensus 89 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 168 (480)
++|.+++.+..+. .++...+..++..+.+.++++.+..+++.+......+.
T Consensus 94 ~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~--------------------------- 144 (280)
T PF13429_consen 94 EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPD--------------------------- 144 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T---------------------------
T ss_pred ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCC---------------------------
Confidence 5555554443332 13333344444444444444444444444433212233
Q ss_pred cCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccH
Q 038395 169 VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS-DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247 (480)
Q Consensus 169 m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 247 (480)
+...|..+...+.+.|+.++|++.|++..+. .|+ ......++..+...|+.+++.+++....+.. +.++..
T Consensus 145 ----~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~ 216 (280)
T PF13429_consen 145 ----SARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDL 216 (280)
T ss_dssp -----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCH
T ss_pred ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHH
Confidence 3444555555555555555555555555553 232 3444455555555555555555555555321 334445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 038395 248 YGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLI 304 (480)
Q Consensus 248 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~ 304 (480)
+..+..+|...|+.++|+.+|++. ...| |+.+...+..++...|+.++|.++.+++.
T Consensus 217 ~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 217 WDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp CHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 555555566666666666665555 2223 44555555556666666666665555543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-11 Score=119.61 Aligned_cols=247 Identities=13% Similarity=0.072 Sum_probs=195.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-CCchhHHHHHHHHHHhCCCHHHHHH
Q 038395 86 GLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNI-KVNVQVGTALINMYSKCGSLKDARL 164 (480)
Q Consensus 86 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~ 164 (480)
-+..+|+.+|...... +.-.......+..+|..++++++++.+|+.+.+.... ..+..+|.+.+..+-+.=.+..--+
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 4567899999885553 3434567778889999999999999999999875222 2256778887766554333322222
Q ss_pred HHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC
Q 038395 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP-SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP 243 (480)
Q Consensus 165 ~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 243 (480)
-+-.+......+|-++.+.|.-+++.+.|++.|++..+ +.| ...+|+.+-.-+.....+|.|...|+... ..
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~ 484 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GV 484 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cC
Confidence 22223334678999999999999999999999999887 456 67888888888888899999999998876 46
Q ss_pred CccHHHHH---HHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHH
Q 038395 244 KVEHYGCM---VNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLS 318 (480)
Q Consensus 244 ~~~~~~~l---i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 318 (480)
++.+|++. .-.|.+.++++.|+-.|++. .+.| +.+....+...+.+.|+.++|+++++++..++|.++-.-..-+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 67777764 46788999999999999988 7777 4777788888899999999999999999999999988888888
Q ss_pred HHHHHcCChhHHHHHHHHHHhC
Q 038395 319 NIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 319 ~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
..+...++.++|+..++++++.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh
Confidence 9999999999999999999864
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-11 Score=119.12 Aligned_cols=272 Identities=14% Similarity=0.049 Sum_probs=145.0
Q ss_pred HHHHHHHHhhcCC--CCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHccCChHHHHHH
Q 038395 57 VAAARVLFDDMEE--KDV-VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP----NEVTAVAVLSACGQIGALESGRWI 129 (480)
Q Consensus 57 ~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----d~~t~~~ll~~~~~~~~~~~a~~~ 129 (480)
..+|...|+.+++ +|. .....+..+|...+++++|.++|+...+. .| +..+|++++=-+-+ +.++.+
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~--~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI--EPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchhHHHHHHHHHHh----hHHHHH
Confidence 3455555555432 222 22334455555556666666666555543 22 33455554433211 111112
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038395 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK---DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK 206 (480)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 206 (480)
+.+-.-. -.+..+.+|.++.+.|.-.++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+.... +.
T Consensus 409 Laq~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 409 LAQDLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 2111111 22334556666666666666666666666665542 334555555555556666666666665533 22
Q ss_pred CCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHH
Q 038395 207 PSD-ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGT 282 (480)
Q Consensus 207 p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ 282 (480)
|.. ..|-.+...|.+.++++.|+-.|+.+. .+.|. ......+...+-+.|+.|+|++++++. .+.| |+..--.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 221 233445555666666666666666665 33443 344445555666666666776666666 2222 3333333
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 283 li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
-+..+...+++++|+..++++.+.-|++...|..+...|.+.|+.+.|..-|.-+.+.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 4445555666777777777777777777667777777777777777776666555443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.8e-10 Score=111.42 Aligned_cols=277 Identities=12% Similarity=0.028 Sum_probs=168.2
Q ss_pred hcCChHHHHHHHhhCCC--CCh-hHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCH--HHHHHHHHHHHHcCChHHHHHH
Q 038395 22 RGGDVLSAEKLFATMPQ--RSL-VSLTTMLTCYAKQGEVAAARVLFDDMEE--KDV--VCWNVMIDGYAQHGLANEALVL 94 (480)
Q Consensus 22 ~~g~~~~A~~~~~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~--~~~~~li~~~~~~g~~~~A~~~ 94 (480)
..|+++.|.+.+.+..+ |+. ..+-....++.+.|+.+.|.+.|++..+ |+. ...-+....+.+.|++++|++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 35777777777776653 222 2333444556667777877777777532 332 2333346667777778888877
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHH-------HHHHHHHhCCCHHHHHHHHH
Q 038395 95 FRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGT-------ALINMYSKCGSLKDARLVFD 167 (480)
Q Consensus 95 ~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------~li~~y~~~g~~~~A~~~f~ 167 (480)
++++.+.. +-+...+..+...+...|+++.+.+.+..+.+. +..+...... .++..-......+...+.++
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~-~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA-GLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 77777753 225556667777777778888777777777775 4333222211 11111112222344444555
Q ss_pred hcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHhhhhcCC
Q 038395 168 RVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF---IGLLSACAHAGLVNEGRRFFNTMKDEYAI 241 (480)
Q Consensus 168 ~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 241 (480)
..+. .+...+..+...+...|+.++|.+++++..+. .||.... ..........++.+.+.+.++...+.
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--- 328 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--- 328 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh---
Confidence 5543 36677777777777788888888877777764 3333311 11111223346667777777766643
Q ss_pred cCCc---cHHHHHHHHHHHcCCHHHHHHHHHh--C-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038395 242 EPKV---EHYGCMVNLLSRAGQVEEAYKLVMD--M-KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305 (480)
Q Consensus 242 ~p~~---~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~ 305 (480)
.|+. ....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3432 3445667777777888888877773 2 5567777777777777777888878777777654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-09 Score=100.75 Aligned_cols=328 Identities=11% Similarity=0.048 Sum_probs=224.6
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHH-HHHHHHHHHHHcC
Q 038395 8 KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV-CWNVMIDGYAQHG 86 (480)
Q Consensus 8 ~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~-~~~~li~~~~~~g 86 (480)
-|.+.+=.-...+-+.|....|.+.|......-+.-|.+-+....-.-+.+.+..+-...+..+.. .=--+..+|-...
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~ 241 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELH 241 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence 344433333344445556666666665554433344444443333334444444433333322111 1112334555566
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC-chhHHHHHHHHHHhCCCHHH-HHH
Q 038395 87 LANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV-NVQVGTALINMYSKCGSLKD-ARL 164 (480)
Q Consensus 87 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~-A~~ 164 (480)
+.++++.-.+.....|++-+...-+....+.-...++++|+.+|+.+.+...... |..+|+.++-.-..+..+.- |..
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 7788888888887777665555555555556677889999999999887522211 45566665533222222221 222
Q ss_pred HHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC
Q 038395 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244 (480)
Q Consensus 165 ~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 244 (480)
++ .+.+--+.|.-.+.+-|+-.++.++|...|++..+.+.. ....|+.+..-|....+...|.+-++.+.+ -.+.|
T Consensus 322 v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~D 397 (559)
T KOG1155|consen 322 VS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRD 397 (559)
T ss_pred HH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchh
Confidence 32 222223456666777888889999999999999885422 346677888899999999999999999984 22456
Q ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 038395 245 VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYA 322 (480)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 322 (480)
-..|-.|.++|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|++.|.++...+-.+...+..|+..|-
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye 477 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYE 477 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 778899999999999999999999998 6666 58899999999999999999999999999988877789999999999
Q ss_pred HcCChhHHHHHHHHHHh
Q 038395 323 AIGNWDGVARVRTLMKE 339 (480)
Q Consensus 323 ~~g~~~~a~~~~~~m~~ 339 (480)
+.++.++|...+++-.+
T Consensus 478 ~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 478 ELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 99999999999988765
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-11 Score=122.81 Aligned_cols=265 Identities=16% Similarity=0.175 Sum_probs=194.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC
Q 038395 93 VLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172 (480)
Q Consensus 93 ~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~ 172 (480)
.++-.+...|+.|+.+||.+++.-|+..|+.+.|- +|..|.-. ..+.+..+++.++......++.+.+. +|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~k-sLpv~e~vf~~lv~sh~~And~Enpk-------ep 81 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK-SLPVREGVFRGLVASHKEANDAENPK-------EP 81 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcc-cccccchhHHHHHhcccccccccCCC-------CC
Confidence 35567888899999999999999999999999999 99999887 88999999999999999999988775 67
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHH
Q 038395 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252 (480)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 252 (480)
...+|+.|..+|.++|+... |+...+ -...+...++..|.-..-..++..+.-..+.-||.. ..+
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~i 146 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAI 146 (1088)
T ss_pred chhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHH
Confidence 88899999999999999865 333332 233455566667766666666665543334455543 455
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHH
Q 038395 253 NLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG-NIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVA 331 (480)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 331 (480)
....-.|.++.+++++..+|..........+++-+.... .+++-..+.+...+ ..++.+|..++..-..+|+.+.|.
T Consensus 147 lllv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e--~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 147 LLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE--APTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc--CCChHHHHHHHHHHHhcCchhhHH
Confidence 666778889999999988864332222222344443332 23333333333333 356689999999999999999999
Q ss_pred HHHHHHHhCCCccCCceeeEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcccCCcceec
Q 038395 332 RVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH 398 (480)
Q Consensus 332 ~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~ 398 (480)
.++.+|+++|++..+.+.|-.+ .|. +...-++.+.+-|++.|+.||..++..
T Consensus 225 ~ll~emke~gfpir~HyFwpLl--------~g~-------~~~q~~e~vlrgmqe~gv~p~seT~ad 276 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLL--------LGI-------NAAQVFEFVLRGMQEKGVQPGSETQAD 276 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhh--------hcC-------ccchHHHHHHHHHHHhcCCCCcchhHH
Confidence 9999999999999999988743 331 222345557889999999999886543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.9e-10 Score=102.31 Aligned_cols=203 Identities=13% Similarity=0.116 Sum_probs=158.8
Q ss_pred cCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHH
Q 038395 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQL 196 (480)
Q Consensus 120 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l 196 (480)
.|++++|...+.+.... . ..-+...-.+.-.+-+.|++++|+..|-++.. .++.+.-.+.+.|....++.+|+++
T Consensus 503 ngd~dka~~~ykeal~n-d-asc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNN-D-ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcC-c-hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 46788888888877753 1 11112222233357778899999999887653 5677777788888889999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC
Q 038395 197 FNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP 275 (480)
Q Consensus 197 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 275 (480)
+.+.... ++.|...+..|...|-+.|+-.+|.+.+-.--+ -++.+.++...|...|....-+++|..+|++. -++|
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 8776543 455677888899999999999999887655432 34567888888999999999999999999998 5789
Q ss_pred CHhHHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCh
Q 038395 276 DSVLWGTLLGAC-RLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW 327 (480)
Q Consensus 276 ~~~~~~~li~a~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 327 (480)
+..-|..++..| ++.|++..|..+++.+.+.-|.+......|++.+...|..
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 999999988766 5679999999999999999999998988999988887753
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.8e-09 Score=97.80 Aligned_cols=331 Identities=12% Similarity=0.081 Sum_probs=206.7
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhCCC----CChhHHHHHHHHHHhcCCHHHHHHHHhhcC----CCCHHHHHHHH
Q 038395 8 KDLYVSTSLVDLYARGGDVLSAEKLFATMPQ----RSLVSLTTMLTCYAKQGEVAAARVLFDDME----EKDVVCWNVMI 79 (480)
Q Consensus 8 ~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li 79 (480)
-...++..+|.+.+|.-..+.|+.++.+-.. -+..++|.+|.+-+-.-+ .++..+|. .||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHH
Confidence 3456777777777777777777777776653 244566777665432222 44444444 37777777777
Q ss_pred HHHHHcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH-HHHHHHHHHHh-C--CC----CCchhHHH
Q 038395 80 DGYAQHGLANE----ALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES-GRWIHSYIENS-R--NI----KVNVQVGT 147 (480)
Q Consensus 80 ~~~~~~g~~~~----A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~~-~--~~----~~~~~~~~ 147 (480)
++.++.|+++. |++++.+|++-|+.|...+|..+|..+.+-++..+ +..++..+... . .+ +.|...+.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 77777776653 45566777777777777777777777776666533 33333333321 0 12 22445556
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCC-----------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038395 148 ALINMYSKCGSLKDARLVFDRVNDK-----------DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216 (480)
Q Consensus 148 ~li~~y~~~g~~~~A~~~f~~m~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 216 (480)
..|+.+.+..+.+-|.++-.-.... ...-|..+....++....+.-+..|+.|.-.-.-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 6667777777777777765544321 12235566677788888888888888888776778888888899
Q ss_pred HHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcC---------CHHH-----HHHHH-------HhC-CCC
Q 038395 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG---------QVEE-----AYKLV-------MDM-KIE 274 (480)
Q Consensus 217 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---------~~~~-----A~~~~-------~~m-~~~ 274 (480)
.|..-.+.++-..+++..+.. +|-.-....-.-+...+++.. ++.. |..++ .+| ...
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~-~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~ 519 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKE-YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD 519 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc
Confidence 988888888887777777663 342222222222222223222 0000 11111 122 223
Q ss_pred CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC---CCCch--hHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 038395 275 PDSVLWGTLLGACRLHGNIALGEKIAEYLISQN---LANSG--TYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343 (480)
Q Consensus 275 p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 343 (480)
-.....+.+...+.+.|..++|-+++..+.+.+ |..+. +..-|++.-...++...|..+++-|...+.+
T Consensus 520 ~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 520 WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 345566777777889999999999999997643 32221 2334556666778889999999999877764
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.7e-09 Score=99.10 Aligned_cols=294 Identities=14% Similarity=0.122 Sum_probs=199.1
Q ss_pred HhcCCHHHHHHHHhhcC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 038395 52 AKQGEVAAARVLFDDME--EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129 (480)
Q Consensus 52 ~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~ 129 (480)
-..|++..|.++|++-. +|+..+|++.|..=.+-...+.|..+|++..- +.|+..+|.-....=.+.|....++.+
T Consensus 152 E~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34455555555555432 37777777777777777777777777777665 357777776666666667777777777
Q ss_pred HHHHHHhCCCC-CchhHHHHHHHHHHhCCCHHHHHHHHHhc----CC---------------------------------
Q 038395 130 HSYIENSRNIK-VNVQVGTALINMYSKCGSLKDARLVFDRV----ND--------------------------------- 171 (480)
Q Consensus 130 ~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~m----~~--------------------------------- 171 (480)
+.......|.. .+...+++....=.++..++.|.-+|.-. ++
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 77766531211 11223333333333445555555544321 11
Q ss_pred ----------CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHH---HHHHHccCCHHHHHHH
Q 038395 172 ----------KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD-------ITFIGL---LSACAHAGLVNEGRRF 231 (480)
Q Consensus 172 ----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~l---l~a~~~~g~~~~a~~~ 231 (480)
-|-.+|--.+..-...|+.+...++|++.... ++|-. ..|.-+ +-.=....+++.+.++
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 03345666666666778888888888887764 45522 112111 1111345788888888
Q ss_pred HHHhhhhcCCcCCccHHHHHHHHHH----HcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038395 232 FNTMKDEYAIEPKVEHYGCMVNLLS----RAGQVEEAYKLVMDM-KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306 (480)
Q Consensus 232 ~~~m~~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m-~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~ 306 (480)
++...+ -++....|+.-+--+|+ ++.++..|.+++... |..|-..+|...|..-.+.++++....++++.++.
T Consensus 389 yq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 389 YQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 888874 34445677766655554 678999999999877 88899999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceee
Q 038395 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSS 350 (480)
Q Consensus 307 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 350 (480)
+|.+..+|.-.+..-...|+++.|..+|+...+.....-|..-|
T Consensus 467 ~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 467 SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 99999999999999999999999999999888765433344333
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-12 Score=85.85 Aligned_cols=50 Identities=32% Similarity=0.549 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 038395 70 KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119 (480)
Q Consensus 70 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~ 119 (480)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.5e-10 Score=101.71 Aligned_cols=199 Identities=14% Similarity=0.113 Sum_probs=155.0
Q ss_pred CchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038395 141 VNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217 (480)
Q Consensus 141 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 217 (480)
.....+..+...|...|++++|.+.|++..+ .+...+..+...|...|++++|.+.|++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3455677777888888888888888877653 245677778888888888888888888887753 234556677777
Q ss_pred HHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhH
Q 038395 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIAL 295 (480)
Q Consensus 218 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~ 295 (480)
.+...|++++|...++..............+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 888889999999998888753222223456677788889999999999999887 3344 46678888889999999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 296 GEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 296 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
|...+++..+..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999887777778888889999999999999988877543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-12 Score=84.99 Aligned_cols=50 Identities=36% Similarity=0.580 Sum_probs=47.2
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038395 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221 (480)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 221 (480)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999875
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-09 Score=96.16 Aligned_cols=211 Identities=17% Similarity=0.107 Sum_probs=95.8
Q ss_pred CChHHHHHHHhhCCCCChh---HHHHHHHHHHhcCCHHHHHHHHhhcCC-CCH------HHHHHHHHHHHHcCChHHHHH
Q 038395 24 GDVLSAEKLFATMPQRSLV---SLTTMLTCYAKQGEVAAARVLFDDMEE-KDV------VCWNVMIDGYAQHGLANEALV 93 (480)
Q Consensus 24 g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~f~~~~~-~~~------~~~~~li~~~~~~g~~~~A~~ 93 (480)
.+.++|.++|-+|.+-|.. +--+|.+.|-+.|.+|.|+++.+.+.+ ||. ...-.|..-|...|-++.|..
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3455555555555543322 233455555555666666665555443 321 123344445555555566666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCc----hhHHHHHHHHHHhCCCHHHHHHHHHhc
Q 038395 94 LFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN----VQVGTALINMYSKCGSLKDARLVFDRV 169 (480)
Q Consensus 94 ~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~y~~~g~~~~A~~~f~~m 169 (480)
+|..+.+.| .--......++..|-...++++|..+-..+.+. +-.+. ...|.-|...+.-..+++.|..++.+.
T Consensus 129 ~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~-~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 129 IFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKL-GGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc-CCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 555555432 122334445555555555555555555555544 22211 112223333333344444444444444
Q ss_pred CCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 038395 170 NDK---DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 170 ~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 236 (480)
.+. .+..--.+...+...|++++|++.++...+.+..--..+...|..+|.+.|+.+++..++..+.
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 331 1222222334444445555555555544443322222334444444444555554444444444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-08 Score=98.82 Aligned_cols=300 Identities=11% Similarity=0.034 Sum_probs=196.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 038395 43 SLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119 (480)
Q Consensus 43 ~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~ 119 (480)
.|-.....+-..|++..|..++...-+ | +...|-+-+..-..+.++++|..+|.+.... .|+...|.--+..---
T Consensus 586 lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ 663 (913)
T KOG0495|consen 586 LWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERY 663 (913)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHH
Confidence 344444444555666666665555443 2 3445666666666666666666666666553 4455555444444444
Q ss_pred cCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHH
Q 038395 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND--K-DVVVWNSMIVGYAMHGFGKDALQL 196 (480)
Q Consensus 120 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l 196 (480)
+++.++|+++++...+. ++.-...|-.+...|-..++++.|++.|..=.+ | .+..|-.|...--+.|..-.|..+
T Consensus 664 ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~i 741 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSI 741 (913)
T ss_pred hhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHH
Confidence 56666666666666653 444455666666666666677777666655443 2 345566666666666677777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Q 038395 197 FNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276 (480)
Q Consensus 197 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 276 (480)
|++.+..+. -|...|...|..=.+.|..+.|..+..+..++ ++.+...|..-|.+..+.++-..+.+.+++.. .|
T Consensus 742 ldrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~d 816 (913)
T KOG0495|consen 742 LDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HD 816 (913)
T ss_pred HHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CC
Confidence 776665542 25566667777777777777777777666643 34445566666666666666555555555543 45
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeeEEe
Q 038395 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIEL 353 (480)
Q Consensus 277 ~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~ 353 (480)
+...-.+...+-....++.|...|.+.++.+|++-.+|.-+...+...|.-++-.+++....... |..|..|..+
T Consensus 817 phVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~av 891 (913)
T KOG0495|consen 817 PHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAV 891 (913)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHH
Confidence 56666677778888899999999999999999999999999999999999999999998887653 5556667543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.7e-09 Score=94.15 Aligned_cols=278 Identities=12% Similarity=0.108 Sum_probs=146.5
Q ss_pred cCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 038395 54 QGEVAAARVLFDDMEE---KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130 (480)
Q Consensus 54 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~ 130 (480)
.|++..|+++..+-.+ ..+..|..-+.+--+.|+.+.|-.++.+..+..-.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4555555555554332 1222333333444445555555555555544322233333334444455555555555555
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC-----------hHHHHHHHHHHHhcCChHHHHHHHHH
Q 038395 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKD-----------VVVWNSMIVGYAMHGFGKDALQLFNE 199 (480)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~-----------~~~~~~li~~~~~~g~~~~A~~l~~~ 199 (480)
..+.+. -+.++.+.......|.+.|++.....++.++.+.. ..+|+.++.-....+..+.-...++.
T Consensus 177 ~~ll~~--~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 177 DQLLEM--TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHh--CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 555442 23344455555555555555555555555555421 12344444333333333322223333
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCH
Q 038395 200 MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM--KIEPDS 277 (480)
Q Consensus 200 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~ 277 (480)
.-.. .+-+...-.+++.-+...|+.++|.++.....+. +..|+. +..-...+-++...-.+..+.- ...-++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 2221 2333344444455555556666666655555533 444431 1111122233333322222222 111235
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 278 ~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
..+.+|...|.+++.+.+|...|+..++..|.. .+|..+..++.+.|+..+|.+++++-.-.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 778889999999999999999999888888765 58999999999999999999998877643
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.4e-09 Score=99.48 Aligned_cols=303 Identities=15% Similarity=0.114 Sum_probs=123.7
Q ss_pred cCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChHHHHHHHH
Q 038395 23 GGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEE---KDVVCWNVMIDGYAQHGLANEALVLFR 96 (480)
Q Consensus 23 ~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 96 (480)
..+.++|+.++.+..+ | +...|.+ |++...++.|.++++...+ .+...|.+-...--++|+.+...++..
T Consensus 389 lE~~~darilL~rAveccp~s~dLwlA----larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~ 464 (913)
T KOG0495|consen 389 LEEPEDARILLERAVECCPQSMDLWLA----LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIID 464 (913)
T ss_pred ccChHHHHHHHHHHHHhccchHHHHHH----HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3445556666655443 1 2233333 3334445556666555543 245555555555555566555555544
Q ss_pred HH----HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC--chhHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 038395 97 RM----LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV--NVQVGTALINMYSKCGSLKDARLVFDRVN 170 (480)
Q Consensus 97 ~m----~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 170 (480)
+- ...|+..+..-|..=..+|-..|..-....+....+.. |+.. -..+|+.-.+.|.+.+.++-|+.+|....
T Consensus 465 rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigi-gvEeed~~~tw~~da~~~~k~~~~~carAVya~al 543 (913)
T KOG0495|consen 465 RGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGI-GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL 543 (913)
T ss_pred HHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhh-ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence 32 23344444444444444444444444444444444433 2221 12233333444444444444444444333
Q ss_pred C---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccH
Q 038395 171 D---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247 (480)
Q Consensus 171 ~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 247 (480)
+ .+...|...+..--.+|..++...+|++.... ++-....|......+-..|++..|+.++..+.+. .+.+...
T Consensus 544 qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~--~pnseei 620 (913)
T KOG0495|consen 544 QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--NPNSEEI 620 (913)
T ss_pred hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--CCCcHHH
Confidence 2 12333333333333334444444444443332 1112222323333333334444444444333321 0112233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCC
Q 038395 248 YGCMVNLLSRAGQVEEAYKLVMDM-KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGN 326 (480)
Q Consensus 248 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 326 (480)
|-+-+........++.|..+|.+. ...|+..+|.--+......++.++|.+++++.++.-|+-...|..+...+-..++
T Consensus 621 wlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ 700 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMEN 700 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHH
Confidence 333333333344444444444333 2233333333333333333344444444444444333333334444444444444
Q ss_pred hhHHHHH
Q 038395 327 WDGVARV 333 (480)
Q Consensus 327 ~~~a~~~ 333 (480)
.+.|.+.
T Consensus 701 ie~aR~a 707 (913)
T KOG0495|consen 701 IEMAREA 707 (913)
T ss_pred HHHHHHH
Confidence 4433333
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.2e-09 Score=104.72 Aligned_cols=331 Identities=11% Similarity=0.042 Sum_probs=191.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhCCCCC------hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC--HHHHHH
Q 038395 8 KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRS------LVSLTTMLTCYAKQGEVAAARVLFDDMEE--KD--VVCWNV 77 (480)
Q Consensus 8 ~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~--~~~~~~ 77 (480)
-|+.+.|.|.+.|.-.|+++.+..+...+...+ ..+|-.+..+|-..|+++.|...|.+... +| +..+--
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 456667777777777777777777766665422 13466677777777777777777776654 22 334455
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----ChHHHHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 038395 78 MIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG----ALESGRWIHSYIENSRNIKVNVQVGTALINMY 153 (480)
Q Consensus 78 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y 153 (480)
|...|.+.|+.+.+...|+..... .+-+..|...+...|+..+ ..+.|..+.....+. .+.|...|..+..+|
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLL 424 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHH
Confidence 667777777777777777777664 2334456666666565553 345555555555542 344555555555555
Q ss_pred HhCCCHHHHHHHHHhcC--------CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCH-----H-HHHHHH
Q 038395 154 SKCGSLKDARLVFDRVN--------DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI---RLKPSD-----I-TFIGLL 216 (480)
Q Consensus 154 ~~~g~~~~A~~~f~~m~--------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~-----~-t~~~ll 216 (480)
-...-+.. +.+|.... .......|.+...+...|.+.+|...|...... -..+|. . +--.+.
T Consensus 425 e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 44332221 33332221 234556666666666677777777777665443 122222 1 111222
Q ss_pred HHHHccCCHHHHHHHHHHhhhhc--------------------------------CCcCCccHHHHHHHHHHHcCCHHHH
Q 038395 217 SACAHAGLVNEGRRFFNTMKDEY--------------------------------AIEPKVEHYGCMVNLLSRAGQVEEA 264 (480)
Q Consensus 217 ~a~~~~g~~~~a~~~~~~m~~~~--------------------------------~~~p~~~~~~~li~~~~~~g~~~~A 264 (480)
...-..++.+.|.+.|..+.+.+ ....++..++.+.+.+.+...+..|
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence 23334445555555555555431 1112222233333333333333333
Q ss_pred HHHHHhC----CCCCCHhHHHHHHHHHH------------hcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChh
Q 038395 265 YKLVMDM----KIEPDSVLWGTLLGACR------------LHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWD 328 (480)
Q Consensus 265 ~~~~~~m----~~~p~~~~~~~li~a~~------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 328 (480)
.+-|..+ -..+|+.+.-+|.+.|. ..+..++|+++|.++++.+|.|..+-+.+..+++..|++.
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~ 663 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFS 663 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCch
Confidence 3322222 12245554444554442 2235678999999999999999888888999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 038395 329 GVARVRTLMKEKGV 342 (480)
Q Consensus 329 ~a~~~~~~m~~~~~ 342 (480)
+|..+|.+.++...
T Consensus 664 ~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 664 EARDIFSQVREATS 677 (1018)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998765
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.2e-08 Score=91.56 Aligned_cols=275 Identities=12% Similarity=0.054 Sum_probs=224.4
Q ss_pred cCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC----CHHHHHHHHHHHHHcCChHHHHHHH
Q 038395 23 GGDVLSAEKLFATMPQ---RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK----DVVCWNVMIDGYAQHGLANEALVLF 95 (480)
Q Consensus 23 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~ 95 (480)
.|++..|+++..+-.+ ..+..|..-+.+--+.|+.+.|-+.+.+..++ +....-+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 6899999999987654 23345666666778899999999999998764 4556777788899999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCch-------hHHHHHHHHHHhCCCHHHHHHHHHh
Q 038395 96 RRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNV-------QVGTALINMYSKCGSLKDARLVFDR 168 (480)
Q Consensus 96 ~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~y~~~g~~~~A~~~f~~ 168 (480)
.++.+.+ +-+.........+|.+.|++.....+...+.+. +.-.+. .+|+.+++=....+..+.-...++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka-~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKA-GLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc-cCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 9998864 346778889999999999999999999999998 765553 3566677666666666666667777
Q ss_pred cCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCc
Q 038395 169 VND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV 245 (480)
Q Consensus 169 m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 245 (480)
.+. .++..-.+++.-+.+.|+.++|.++..+-.+.+..|.. ..+-.+.+.++.+.-.+..+.-.+.++-.|
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p-- 328 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP-- 328 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--
Confidence 774 36777778899999999999999999999988777762 223356777888887777777776655555
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038395 246 EHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305 (480)
Q Consensus 246 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~ 305 (480)
..+.+|...|.+.+.+.+|.+.|+.. +..|+..+|+.+..++.+.|+.+.|.+..++.+.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 67889999999999999999999987 8889999999999999999999999999998875
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.9e-09 Score=98.33 Aligned_cols=184 Identities=11% Similarity=0.066 Sum_probs=143.6
Q ss_pred HhCCCHHHHHHHHHhcCCCChHHHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038395 154 SKCGSLKDARLVFDRVNDKDVVVWNSMI---VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230 (480)
Q Consensus 154 ~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 230 (480)
...|++++|.+.|.+....|...-.+|. -.+-..|+.++|++.|-++..- +..+...+..+.+.|....+..+|.+
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 3468999999999998887765444333 3466789999999999887653 34466777788888999999999999
Q ss_pred HHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038395 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIE-PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308 (480)
Q Consensus 231 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~ 308 (480)
++.+... -++.|+...+-|.+.|-+.|+-..|.+..-+- ..- -+..+..-|..-|....-.+++..+|+++.-..|
T Consensus 580 ~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 580 LLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 9988762 44556888999999999999999999875444 333 3667777777778888888999999999988888
Q ss_pred CCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 309 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
....-...+.+++.+.|++..|..+++....+
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 76544445666678899999999999998654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.3e-09 Score=96.04 Aligned_cols=211 Identities=15% Similarity=0.114 Sum_probs=160.1
Q ss_pred CChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHH
Q 038395 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLF 197 (480)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 197 (480)
|+.-.+.+-++..++. .+.+...|.-+..+|....+-++..+.|+...+ .|..+|..-...+.-.+++++|..=|
T Consensus 340 g~~~~a~~d~~~~I~l--~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKL--DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred CCchhhhhhHHHHHhc--CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 4555555566666543 223334466677778888888888888887764 35566766666677778888999989
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC
Q 038395 198 NEMCRIRLKP-SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP 275 (480)
Q Consensus 198 ~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 275 (480)
++.+.. .| +...|.-+-.+.-+.+.++++...|+...++ ++..++.|+.....+...+++++|.+.|+.. .++|
T Consensus 418 ~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 888774 44 3456777777777889999999999999964 4556889999999999999999999999886 4444
Q ss_pred C---------HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038395 276 D---------SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 276 ~---------~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
+ +.+-..++-.-. .+++..|..+++++++++|....+|..|...-...|+.++|.++|++-.
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3 222222322222 3899999999999999999998999999999999999999999998764
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.4e-09 Score=96.27 Aligned_cols=191 Identities=13% Similarity=0.084 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 038395 74 CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMY 153 (480)
Q Consensus 74 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y 153 (480)
.+..+...|...|++++|.+.|++..+.. +.+...+..+...+...|+++.|...++...+. .+.+...+..+...|
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHH
Confidence 34444444444444444444444443321 112333344444444444444444444444432 122333444444444
Q ss_pred HhCCCHHHHHHHHHhcCC-----CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 038395 154 SKCGSLKDARLVFDRVND-----KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEG 228 (480)
Q Consensus 154 ~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 228 (480)
...|++++|.+.|++... .....+..+...+...|++++|...|.+..... +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 444555555444444432 122334444445555555555555555554432 11233444455555555555555
Q ss_pred HHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHh
Q 038395 229 RRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMD 270 (480)
Q Consensus 229 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 270 (480)
...++..... .+.+...+..+...+...|+.++|..+.+.
T Consensus 189 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 189 RAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5555555432 122333444445555555555555555444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.4e-09 Score=92.72 Aligned_cols=288 Identities=12% Similarity=0.064 Sum_probs=158.9
Q ss_pred cCCHHHHHHHHhhcCCCCHHHH---HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCChHHHH
Q 038395 54 QGEVAAARVLFDDMEEKDVVCW---NVMIDGYAQHGLANEALVLFRRMLAEKVEPN---EVTAVAVLSACGQIGALESGR 127 (480)
Q Consensus 54 ~g~~~~A~~~f~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~t~~~ll~~~~~~~~~~~a~ 127 (480)
..+.++|.++|-+|.+-|..++ -+|.+.|-+.|..++|+.+-+.+.++.--+. ....-.+..-|...|-++.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3556677777777766544433 3566666677777777777666655311111 112334445566667777777
Q ss_pred HHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChH--------HHHHHHHHHHhcCChHHHHHHHHH
Q 038395 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV--------VWNSMIVGYAMHGFGKDALQLFNE 199 (480)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~--------~~~~li~~~~~~g~~~~A~~l~~~ 199 (480)
.+|..+... + ..-......|+..|-...+|++|.++-+++.+-+.. .|--+...+....+.+.|..++.+
T Consensus 128 ~~f~~L~de-~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 128 DIFNQLVDE-G-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHhcc-h-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 777766653 1 122334455666777777777776666655443222 233334444445666677777766
Q ss_pred HHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH
Q 038395 200 MCRIRLKPSDI-TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDS 277 (480)
Q Consensus 200 m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 277 (480)
..+.. |..+ .-..+.......|+++.|.+.++.+.+. ...--..+...|..+|...|+.++...++.++ ...+.+
T Consensus 206 Alqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 206 ALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 66542 2222 2223344556667777777777766643 22222455666667777777777777766665 334444
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHH---HHcCChhHHHHHHHHHHhCCCccCCc
Q 038395 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIY---AAIGNWDGVARVRTLMKEKGVQKEPG 347 (480)
Q Consensus 278 ~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~~~~~~~~ 347 (480)
..-..+-..-....-.+.|...+.+-+...|.-. .+.-|+..- +.-|++.+-..+++.|....++..|.
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~-gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR-GFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH-HHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 4444444444455555666666666666666543 333333332 23345666677777776655554443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.6e-09 Score=107.66 Aligned_cols=260 Identities=16% Similarity=0.049 Sum_probs=184.1
Q ss_pred CHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH---------ccCChHHHHHHHHHHHH
Q 038395 71 DVVCWNVMIDGYAQ-----HGLANEALVLFRRMLAEKVEPN-EVTAVAVLSACG---------QIGALESGRWIHSYIEN 135 (480)
Q Consensus 71 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 135 (480)
+...|...+.+-.. .+..++|+++|++..+. .|+ ...+..+..++. ..+++++|...++...+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45566666665322 13467899999999875 564 445555544433 22457899999999987
Q ss_pred hCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HH
Q 038395 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND--K-DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD-IT 211 (480)
Q Consensus 136 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t 211 (480)
. -+.+...+..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+.. |+. ..
T Consensus 333 l--dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~ 408 (553)
T PRK12370 333 L--DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAA 408 (553)
T ss_pred c--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhh
Confidence 4 455777888888899999999999999998764 3 56788889999999999999999999998853 442 22
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHH
Q 038395 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDS-VLWGTLLGACR 288 (480)
Q Consensus 212 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~li~a~~ 288 (480)
+..++..+...|++++|...++++.+. ..|+ +..+..+...|...|++++|...+.++ +..|+. ..++.+...+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 333444566689999999999988743 1343 445677888899999999999999988 445553 44555556667
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 289 LHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
..| +.+...++.+.+..-..+..+..+...|.-.|+-+.+... +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777 4777777777663322111222256677778888877776 7777664
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=7e-09 Score=96.23 Aligned_cols=157 Identities=13% Similarity=0.103 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHH
Q 038395 108 VTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGY 184 (480)
Q Consensus 108 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~ 184 (480)
.|...+.+-|+-.++.++|..+|+...+. .+....+|+.+..-|....+...|...++...+ +|-..|-.|..+|
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAY 408 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHH
Confidence 34555555555555555555555555542 233344555555555555555555555555443 3555555555555
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHH
Q 038395 185 AMHGFGKDALQLFNEMCRIRLKP-SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263 (480)
Q Consensus 185 ~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 263 (480)
...+.+.=|+-.|++.... +| |...|.+|..+|.+.++.++|...|.....- | ..+...+..|.++|-+.++.++
T Consensus 409 eim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-~-dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-G-DTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-c-ccchHHHHHHHHHHHHHHhHHH
Confidence 5555555555555555542 22 3455555555555555666665555555531 1 2233455555555555555555
Q ss_pred HHHHHHh
Q 038395 264 AYKLVMD 270 (480)
Q Consensus 264 A~~~~~~ 270 (480)
|...|++
T Consensus 485 Aa~~yek 491 (559)
T KOG1155|consen 485 AAQYYEK 491 (559)
T ss_pred HHHHHHH
Confidence 5555443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2e-09 Score=106.96 Aligned_cols=241 Identities=13% Similarity=0.072 Sum_probs=161.2
Q ss_pred eecCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHH
Q 038395 3 KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQR----SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVM 78 (480)
Q Consensus 3 ~~g~~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l 78 (480)
..|+.|+..+|.+||.-|+..|+.+.|- +|.-|.-+ +...++.++.+..+.++.+.+. +|...+|+.|
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~L 89 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNL 89 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHH
Confidence 3689999999999999999999999998 99888754 4467899999998999887765 7888999999
Q ss_pred HHHHHHcCChHHHHHHHHH-HH-------HCCCCCCHHHHHHHHHHH--------------HccCChHHHHHHHHHHHHh
Q 038395 79 IDGYAQHGLANEALVLFRR-ML-------AEKVEPNEVTAVAVLSAC--------------GQIGALESGRWIHSYIENS 136 (480)
Q Consensus 79 i~~~~~~g~~~~A~~~~~~-m~-------~~g~~pd~~t~~~ll~~~--------------~~~~~~~~a~~~~~~~~~~ 136 (480)
..+|.+.|+... ++..++ |. ..|+.-...-+-..+.+| ...|-++.+.++...+-..
T Consensus 90 l~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 90 LKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 999999999765 222222 21 123221122222222221 1222333333333222111
Q ss_pred CCCCCchhHHHHHHHHHHh-CCCHHHHHHHHHhcCC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 038395 137 RNIKVNVQVGTALINMYSK-CGSLKDARLVFDRVND-KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIG 214 (480)
Q Consensus 137 ~~~~~~~~~~~~li~~y~~-~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 214 (480)
....|..+ .++-... ...+++-...-....+ ++..++.+.+..-.-+|+.+.|..++.+|++.|++.+..-|..
T Consensus 169 a~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwp 244 (1088)
T KOG4318|consen 169 AWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWP 244 (1088)
T ss_pred cccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchh
Confidence 00111111 1111111 1123333333333333 7889999999999999999999999999999999999988888
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCC
Q 038395 215 LLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260 (480)
Q Consensus 215 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 260 (480)
|+-+ .++...+..++..|.. .|+.|+.+|+...+-.+...|.
T Consensus 245 Ll~g---~~~~q~~e~vlrgmqe-~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 245 LLLG---INAAQVFEFVLRGMQE-KGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhc---CccchHHHHHHHHHHH-hcCCCCcchhHHHHHhhhcchh
Confidence 8855 7888888888888885 5999999999877766666444
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=6e-09 Score=101.61 Aligned_cols=190 Identities=16% Similarity=0.189 Sum_probs=126.8
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCC-------C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCC-CCH-H
Q 038395 149 LINMYSKCGSLKDARLVFDRVND-------K----DVVVWNSMIVGYAMHGFGKDALQLFNEMCR-----IRLK-PSD-I 210 (480)
Q Consensus 149 li~~y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~-p~~-~ 210 (480)
+...|...+++++|..+|+++.. + -..+++.|...|.+.|++++|...+++..+ .|.. |.. .
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 34445555555555555544431 1 123455555556666666555555554332 2222 222 2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhcC--CcCC----ccHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCC
Q 038395 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYA--IEPK----VEHYGCMVNLLSRAGQVEEAYKLVMDM---------KIEP 275 (480)
Q Consensus 211 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p 275 (480)
-++.+...|...+.+++|..+++...+.+. ..++ ..+++.|...|...|++++|.+++++. +..+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 355666778888999999888887665433 1222 357889999999999999999999887 1122
Q ss_pred C-HhHHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCC---chhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038395 276 D-SVLWGTLLGACRLHGNIALGEKIAEYLIS----QNLAN---SGTYVLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 276 ~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
. ...++.|..+|.+.++++.|.++|.+... .+|+. ..+|..|+..|...|++++|.++.+...
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 45677888999999999999999888765 45543 4578899999999999999999988875
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.7e-08 Score=100.33 Aligned_cols=314 Identities=12% Similarity=0.058 Sum_probs=162.4
Q ss_pred HHHhcCChHHHHHHHhhCCCCChhHHHHHHHHH---Hh---cCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChH
Q 038395 19 LYARGGDVLSAEKLFATMPQRSLVSLTTMLTCY---AK---QGEVAAARVLFDDMEE---KDVVCWNVMIDGYAQHGLAN 89 (480)
Q Consensus 19 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~---~~---~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 89 (480)
.+.++|+.+.|+..|....+-|+..-++++... .. ...+..+..++...-. .|++..+.|.+-|...|++.
T Consensus 208 Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~ 287 (1018)
T KOG2002|consen 208 CFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYE 287 (1018)
T ss_pred HHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHH
Confidence 334566666666666665543333333332221 11 1123334444433321 36677777888888888888
Q ss_pred HHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCc--hhHHHHHHHHHHhCCCHHHHHHH
Q 038395 90 EALVLFRRMLAEKVE--PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN--VQVGTALINMYSKCGSLKDARLV 165 (480)
Q Consensus 90 ~A~~~~~~m~~~g~~--pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~ 165 (480)
.++.+...+...... .-...|-.+.+++-..|++++|..+|.+..+. .++ +..+--|..+|.+.|+++.|...
T Consensus 288 ~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~---~~d~~~l~~~GlgQm~i~~~dle~s~~~ 364 (1018)
T KOG2002|consen 288 RVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA---DNDNFVLPLVGLGQMYIKRGDLEESKFC 364 (1018)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---CCCCccccccchhHHHHHhchHHHHHHH
Confidence 888887777654211 12345777888888888888888888777753 333 34445677888888888888888
Q ss_pred HHhcCC--C-ChHHHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh-
Q 038395 166 FDRVND--K-DVVVWNSMIVGYAMHG----FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD- 237 (480)
Q Consensus 166 f~~m~~--~-~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~- 237 (480)
|+.+.. | +..+...|...|+..+ ..++|..++.+..+.- ..|...|..+...+-. ++...++.+|..+..
T Consensus 365 fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~ 442 (1018)
T KOG2002|consen 365 FEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDI 442 (1018)
T ss_pred HHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHH
Confidence 877654 2 3345555555555553 3445555555544431 2244455444444433 222222443333221
Q ss_pred --hcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-C-----CCCCH------hHHHHHHHHHHhcCChhHHHHHHHHH
Q 038395 238 --EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-K-----IEPDS------VLWGTLLGACRLHGNIALGEKIAEYL 303 (480)
Q Consensus 238 --~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-----~~p~~------~~~~~li~a~~~~~~~~~a~~~~~~~ 303 (480)
..+-.+.++..|.+...+...|.+++|...|... + ..+|. .+-..+....-..++.+.|.+.+..+
T Consensus 443 L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~I 522 (1018)
T KOG2002|consen 443 LESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSI 522 (1018)
T ss_pred HHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 1122344555666666666666666666666554 1 11121 11122233333334455555555555
Q ss_pred HHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 038395 304 ISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337 (480)
Q Consensus 304 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 337 (480)
++..|.-...|.-|+-+--..+...+|...++..
T Consensus 523 lkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~ 556 (1018)
T KOG2002|consen 523 LKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDA 556 (1018)
T ss_pred HHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHH
Confidence 5544444444444443333333444444444333
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-08 Score=95.72 Aligned_cols=261 Identities=13% Similarity=0.037 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 038395 72 VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151 (480)
Q Consensus 72 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 151 (480)
......-..-+-..+++.+.+++++...+. .++....+..-|.++...|+..+-..+=..+++ ..|..+.+|-++.-
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~--~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVD--LYPSKALSWFAVGC 320 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCCcchhhHHH
Confidence 334444555677789999999999998876 355666666667778888887777766666666 46778889999999
Q ss_pred HHHhCCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 038395 152 MYSKCGSLKDARLVFDRVNDK---DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEG 228 (480)
Q Consensus 152 ~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 228 (480)
-|.-.|+..+|++.|.+...- =...|-.....|+-.|..++|+..+...-+. ++-....+.-+.--|.+.+..+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 999999999999999987653 3468999999999999999999998877653 111222233444568889999999
Q ss_pred HHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCC-CHhHHHHHHHHHHhcCChhHHHH
Q 038395 229 RRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM--------KIEP-DSVLWGTLLGACRLHGNIALGEK 298 (480)
Q Consensus 229 ~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p-~~~~~~~li~a~~~~~~~~~a~~ 298 (480)
.++|.... ++.|+ +...+-+.-.....+.+.+|..+|+.. +..+ -..+++.|..+|++.+.+++|..
T Consensus 400 e~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99999987 55564 666666666667788999999998876 1111 34568889999999999999999
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 038395 299 IAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
.+++.+.+.|.++.++.++.-.|...|+++.|...|.+..-
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999987643
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.6e-09 Score=105.27 Aligned_cols=257 Identities=10% Similarity=-0.015 Sum_probs=181.4
Q ss_pred ChhHHHHHHHHHHh-----cCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHH---------cCChHHHHHHHHHHHHCC
Q 038395 40 SLVSLTTMLTCYAK-----QGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQ---------HGLANEALVLFRRMLAEK 102 (480)
Q Consensus 40 ~~~~~~~li~~~~~-----~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g 102 (480)
+..+|...+.+-.. .+++++|...|++..+ | +...|..+..+|.. .+++++|...+++..+..
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld 334 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD 334 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC
Confidence 45556666665322 2347899999999875 4 34567766665542 244789999999998863
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CC-hHHHHH
Q 038395 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND--KD-VVVWNS 179 (480)
Q Consensus 103 ~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~-~~~~~~ 179 (480)
+-+...+..+...+...|++++|...+++..+. .+.+...+..+...|...|++++|...|++..+ |+ ...+..
T Consensus 335 -P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 335 -HNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 336677888888888999999999999999975 355677888899999999999999999999865 33 223344
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHH
Q 038395 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPS-DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSR 257 (480)
Q Consensus 180 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~ 257 (480)
++..+...|++++|+..+++..... .|+ ...+..+..++...|+.++|...+..+... .|+ ....+.+...|.+
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHHHhc
Confidence 4555777899999999999987653 343 444666777888999999999999987643 444 3344556666777
Q ss_pred cCCHHHHHHHHHhC----CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038395 258 AGQVEEAYKLVMDM----KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308 (480)
Q Consensus 258 ~g~~~~A~~~~~~m----~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~ 308 (480)
.| ++|...++.+ ...|...-+ +-..+.-+|+.+.+... +++.+.+.
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccch
Confidence 77 4777766665 333433333 33445566777766665 77766543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-09 Score=95.38 Aligned_cols=228 Identities=15% Similarity=0.136 Sum_probs=157.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHh
Q 038395 76 NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155 (480)
Q Consensus 76 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~ 155 (480)
+.|..+|.+.|.+.+|.+.|+.-+.. .|-+.||..+-++|.+..+.+.|+.++.+-.. .++.|+....-....+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHH
Confidence 56777888888888888888877765 56667777788888888888888888887775 355555555556666666
Q ss_pred CCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038395 156 CGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232 (480)
Q Consensus 156 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 232 (480)
.++.++|.++++...+ .++.+..++..+|.-.++++-|+..|+++.+.|+. +...|+.+.-+|.-.+++|-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 6666666666666544 24444444555555666666666666666666654 4445555555555555555555555
Q ss_pred HHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC--HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038395 233 NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD--SVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310 (480)
Q Consensus 233 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~--~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~ 310 (480)
.+.... -.+|+ ..+|..|.......||+..|.+.|+..+..++++
T Consensus 382 ~RAlst---------------------------------at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 382 QRALST---------------------------------ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred HHHHhh---------------------------------ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 444321 11222 4567777777777889999999999999989988
Q ss_pred chhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 311 SGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
..+++.|.-.-.+.|++++|..++...+...
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 8899999888899999999999988877654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2e-07 Score=93.46 Aligned_cols=333 Identities=12% Similarity=0.076 Sum_probs=243.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhC---CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CHHHHHHHHH
Q 038395 7 DKDLYVSTSLVDLYARGGDVLSAEKLFATM---PQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK---DVVCWNVMID 80 (480)
Q Consensus 7 ~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~ 80 (480)
+.+...|-.|...|-..|+.+++...+-.. ...|..-|..+.....+.|.++.|.-.|.+..+. +....--=+.
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~ 249 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSS 249 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 446678999999999999999998876543 2357788999999999999999999999998763 3333334456
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhC
Q 038395 81 GYAQHGLANEALVLFRRMLAEKVEPNEV----TAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156 (480)
Q Consensus 81 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 156 (480)
.|-+.|+...|++.|.++.....+.|.. +.-.++..+...++-+.|.+.+.......+-..+...++.+..+|.+.
T Consensus 250 L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~ 329 (895)
T KOG2076|consen 250 LYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKN 329 (895)
T ss_pred HHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHh
Confidence 7889999999999999999874322322 233345556667777888888887776434455667788999999999
Q ss_pred CCHHHHHHHHHhcCC----C----------------------ChHHHHH----HHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038395 157 GSLKDARLVFDRVND----K----------------------DVVVWNS----MIVGYAMHGFGKDALQLFNEMCRIRLK 206 (480)
Q Consensus 157 g~~~~A~~~f~~m~~----~----------------------~~~~~~~----li~~~~~~g~~~~A~~l~~~m~~~g~~ 206 (480)
..++.|......+.. + +..+|+. +.-++......+....+.....+..+.
T Consensus 330 ~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~ 409 (895)
T KOG2076|consen 330 KQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVW 409 (895)
T ss_pred HHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCC
Confidence 999998877665543 1 1111211 222334444444444455555555533
Q ss_pred C--CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHH
Q 038395 207 P--SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGT 282 (480)
Q Consensus 207 p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ 282 (480)
| +...|.-+..++.+.|.+.+|..+|..+... ...-+...|--+..+|...|..++|.+.|+.. ...|+ ...--+
T Consensus 410 ~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~ 488 (895)
T KOG2076|consen 410 VSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARIT 488 (895)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhh
Confidence 3 4567888999999999999999999999854 22334678999999999999999999999988 55564 455566
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCC---------CchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 283 LLGACRLHGNIALGEKIAEYLISQNLA---------NSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 283 li~a~~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
|...+.+.|+.++|.+.+..+..-++. +..........|...|+.++-..+-.+|...
T Consensus 489 Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~ 555 (895)
T KOG2076|consen 489 LASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDD 555 (895)
T ss_pred HHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 778889999999999999987743322 2234456778889999999877777777554
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.5e-07 Score=84.91 Aligned_cols=300 Identities=12% Similarity=0.054 Sum_probs=202.1
Q ss_pred CCCChhHHHHHHHHHHhc--CChHHHHHHHhhCC-----CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHH---HH
Q 038395 6 LDKDLYVSTSLVDLYARG--GDVLSAEKLFATMP-----QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV---CW 75 (480)
Q Consensus 6 ~~~d~~~~~~ll~~~~~~--g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~---~~ 75 (480)
++|+......-+.+|+.+ ++-..|...+-... .-|+.....+...+...|+.++|+..|++...-|.. +.
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 344444444445555443 44444444433222 236777888888888999999999999886543322 22
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHh
Q 038395 76 NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155 (480)
Q Consensus 76 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~ 155 (480)
..-.-.+.+.|++++...+...+.... +-....|..-+......++++.|+.+-+..++. -+.+...+..-...+..
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPRNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--CcccchHHHhccHHHHh
Confidence 222334567788888777777766531 223333444444445567778888877777653 33445555555667788
Q ss_pred CCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHH-HccCCHHHHHH
Q 038395 156 CGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL-SAC-AHAGLVNEGRR 230 (480)
Q Consensus 156 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~-~~~g~~~~a~~ 230 (480)
.|+.+.|.-.|+.... -+..+|.-|+..|...|++.+|.-+-+...+. +..+..+.+.+. ..| -....-++|.+
T Consensus 347 ~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHH
Confidence 8999999888887653 37789999999999999999988877765543 233444544441 222 23334578888
Q ss_pred HHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038395 231 FFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308 (480)
Q Consensus 231 ~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~ 308 (480)
+++.-. .+.|+ ....+.+...+...|..+++..++++. ...||...-+.|...++..+.+.+|...|..+++++|
T Consensus 426 f~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 426 FAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 888766 44676 445567778888899999999999887 6678999999999999999999999999999999999
Q ss_pred CCch
Q 038395 309 ANSG 312 (480)
Q Consensus 309 ~~~~ 312 (480)
.+..
T Consensus 503 ~~~~ 506 (564)
T KOG1174|consen 503 KSKR 506 (564)
T ss_pred cchH
Confidence 8743
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.8e-09 Score=91.16 Aligned_cols=197 Identities=13% Similarity=0.095 Sum_probs=163.2
Q ss_pred CCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-HHH
Q 038395 140 KVNVQVGTALINMYSKCGSLKDARLVFDRVND--KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI-GLL 216 (480)
Q Consensus 140 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll 216 (480)
-.|..=-+.+...|.+.|.+.+|.+.|+...+ +-+.+|-.|-.+|.+..++..|+.+|.+-.+. .|-.+||. ...
T Consensus 220 ~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~A 297 (478)
T KOG1129|consen 220 TLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQA 297 (478)
T ss_pred hHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhH
Confidence 33444447788999999999999999987654 67789999999999999999999999998774 56666664 566
Q ss_pred HHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhcCCh
Q 038395 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNI 293 (480)
Q Consensus 217 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~a~~~~~~~ 293 (480)
..+...++.++|.++++...+.. ..+++...++...|.-.++.+-|+.+++++ |+ -++..|+.+.-+|.-.+++
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcch
Confidence 77888899999999999998642 446788888999999999999999999887 64 4788999999999999999
Q ss_pred hHHHHHHHHHHHcC--CC-CchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 294 ALGEKIAEYLISQN--LA-NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 294 ~~a~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
+.++.-|++++..- |. -...|..|.......|++.-|.+-|+.....+
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 99999999998843 32 34578888888888999999998888765443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.6e-08 Score=90.70 Aligned_cols=217 Identities=11% Similarity=-0.003 Sum_probs=113.4
Q ss_pred cCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHH
Q 038395 85 HGLANEALVLFRRMLAEK-VEPN--EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161 (480)
Q Consensus 85 ~g~~~~A~~~~~~m~~~g-~~pd--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 161 (480)
.+..+.++.-+.+++... ..|+ ...|......+...|+.+.|...+....+. .+.+...|+.+...|...|++++
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 345566666666666431 1222 234555555666677777777777666653 34456666667777777777777
Q ss_pred HHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhh
Q 038395 162 ARLVFDRVND--K-DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238 (480)
Q Consensus 162 A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 238 (480)
|...|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|.....
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~- 193 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE- 193 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh-
Confidence 7777766643 2 3456666666666667777777777666653 33322111111223345566666666655432
Q ss_pred cCCcCCccHHHHHHHHHHHcCCHHHH--HHHHHhC-CC----CC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038395 239 YAIEPKVEHYGCMVNLLSRAGQVEEA--YKLVMDM-KI----EP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310 (480)
Q Consensus 239 ~~~~p~~~~~~~li~~~~~~g~~~~A--~~~~~~m-~~----~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~ 310 (480)
...|+...+ .++.. ..|++.++ .+.+.+- .. .| ....|..+...+...|++++|...|+++++.+|++
T Consensus 194 -~~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 194 -KLDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred -hCCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 122322221 22222 23333222 2222111 11 11 12355666666666666666666666666666543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.7e-07 Score=86.18 Aligned_cols=94 Identities=12% Similarity=-0.172 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 038395 74 CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMY 153 (480)
Q Consensus 74 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y 153 (480)
.|..+...|.+.|+.++|...|++..+.. +.+...|..+...+...|+++.|...++...+. .+.+..++..+...|
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l 142 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 35555555555555555555555555532 223445555555555555555555555555542 222344445555555
Q ss_pred HhCCCHHHHHHHHHhcC
Q 038395 154 SKCGSLKDARLVFDRVN 170 (480)
Q Consensus 154 ~~~g~~~~A~~~f~~m~ 170 (480)
...|++++|.+.|+...
T Consensus 143 ~~~g~~~eA~~~~~~al 159 (296)
T PRK11189 143 YYGGRYELAQDDLLAFY 159 (296)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55555555555555543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.1e-06 Score=79.29 Aligned_cols=318 Identities=13% Similarity=0.148 Sum_probs=213.7
Q ss_pred HHHHhcCChHHHHHHHhhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhcC--CCCHHHHHHHHHHHHHcCChHHHHH
Q 038395 18 DLYARGGDVLSAEKLFATMP--QRSLVSLTTMLTCYAKQGEVAAARVLFDDME--EKDVVCWNVMIDGYAQHGLANEALV 93 (480)
Q Consensus 18 ~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 93 (480)
-+=-..|++..|+++|+.-. +|+...|++.|..=.+-..++.|..++++.. .|++.+|--...-=-++|+...|..
T Consensus 149 ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHH
Confidence 33344566677777776543 4666777777776666666777777766643 4666666666666666666666666
Q ss_pred HHHHHHHCCCCCCHH----HHHHHHHHHHccCChHHHHHHHHHHHHh---------------------------------
Q 038395 94 LFRRMLAEKVEPNEV----TAVAVLSACGQIGALESGRWIHSYIENS--------------------------------- 136 (480)
Q Consensus 94 ~~~~m~~~g~~pd~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~--------------------------------- 136 (480)
+|....+. -.|.. .|++...-=.+...++.|..++...+..
T Consensus 229 VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 229 VYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 66655442 11111 1222222112233334444444333321
Q ss_pred ---------CCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CC---hHHHHHHHHH--------HHhcCChHHHH
Q 038395 137 ---------RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND--KD---VVVWNSMIVG--------YAMHGFGKDAL 194 (480)
Q Consensus 137 ---------~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~---~~~~~~li~~--------~~~~g~~~~A~ 194 (480)
...+.|-.+|--.++.-...|+.+...++|++... |. -..|.-.|-. -....+.+.+.
T Consensus 307 Rk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 02334455566667777778999999999998764 21 1233332221 12467889999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH----HccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHh
Q 038395 195 QLFNEMCRIRLKPSDITFIGLLSAC----AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMD 270 (480)
Q Consensus 195 ~l~~~m~~~g~~p~~~t~~~ll~a~----~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 270 (480)
++|+...+. ++-...||..+=-.| .+..++..|.+++.... |.-|...++-..|+.=.+.+.+|.+..++++
T Consensus 387 ~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 387 QVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999998873 444567776554333 46688999999999987 8899999999999999999999999999998
Q ss_pred C-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 271 M-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA--NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 271 m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
. ...| |..+|......-...|+.+.|..+|..++..... +...+-+-|..-...|.++.|..+++++.++.
T Consensus 463 fle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 463 FLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 7 5556 5789998888888999999999999999875432 22355666777788999999999999998764
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.5e-08 Score=96.31 Aligned_cols=225 Identities=17% Similarity=0.163 Sum_probs=117.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC----------CCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHC-----CC-CC-CHH
Q 038395 47 MLTCYAKQGEVAAARVLFDDMEE----------KDVV-CWNVMIDGYAQHGLANEALVLFRRMLAE-----KV-EP-NEV 108 (480)
Q Consensus 47 li~~~~~~g~~~~A~~~f~~~~~----------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p-d~~ 108 (480)
+...|...|+++.|+.+|+...+ |.+. .-+.+...|...+++++|..+|+++..- |- .| -..
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 55555555555555555554332 2222 1233445555666666666666655431 11 11 122
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhC----C-CCCch-hHHHHHHHHHHhCCCHHHHHHHHHhcCC-------C-C-
Q 038395 109 TAVAVLSACGQIGALESGRWIHSYIENSR----N-IKVNV-QVGTALINMYSKCGSLKDARLVFDRVND-------K-D- 173 (480)
Q Consensus 109 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~-~~~~~li~~y~~~g~~~~A~~~f~~m~~-------~-~- 173 (480)
+++.|..+|.+.|++++|...++...+.. + ..|.+ ...+.+...+...++++.|..+++...+ + +
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 45555555666666665555554443310 1 11111 1233444555556666666655554321 1 2
Q ss_pred --hHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC--CC-CHHHHHHHHHHHHccCCHHHHHHHHHHhh---hhcCC
Q 038395 174 --VVVWNSMIVGYAMHGFGKDALQLFNEMCRI----RL--KP-SDITFIGLLSACAHAGLVNEGRRFFNTMK---DEYAI 241 (480)
Q Consensus 174 --~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~--~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~~ 241 (480)
.-+++.|...|...|++++|.++|++.... +- .+ ....++.+..+|.+.+..++|.++|.+.. +..|.
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 135666777777777777777777665432 11 11 13455666667777777776666665532 12222
Q ss_pred -cCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 242 -EPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 242 -~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
.|+ ..+|..|...|.+.|++++|.++.+..
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 233 456777777777777777777776554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.2e-06 Score=82.03 Aligned_cols=323 Identities=15% Similarity=0.213 Sum_probs=198.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCC--ChhHHHHHHHHHHh----------------cC------CHHHHHHHHh
Q 038395 10 LYVSTSLVDLYARGGDVLSAEKLFATMPQR--SLVSLTTMLTCYAK----------------QG------EVAAARVLFD 65 (480)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~----------------~g------~~~~A~~~f~ 65 (480)
.+.|++|.+-|.+.|.++.|+.+|++..+. .+.-++.+-.+|++ .| +++-...-|+
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 358999999999999999999999986542 22233444444411 11 1233334444
Q ss_pred hcCC---------------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHccCChH
Q 038395 66 DMEE---------------KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN------EVTAVAVLSACGQIGALE 124 (480)
Q Consensus 66 ~~~~---------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd------~~t~~~ll~~~~~~~~~~ 124 (480)
.+.. .++..|..-+.. ..|++.+-...|.+..+. +.|. ...|..+.+.|-+.|+++
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 4332 134445444432 356677777777777664 3332 235667777777888888
Q ss_pred HHHHHHHHHHHhCCCCCc---hhHHHHHHHHHHhCCCHHHHHHHHHhcCC---------------------CChHHHHHH
Q 038395 125 SGRWIHSYIENSRNIKVN---VQVGTALINMYSKCGSLKDARLVFDRVND---------------------KDVVVWNSM 180 (480)
Q Consensus 125 ~a~~~~~~~~~~~~~~~~---~~~~~~li~~y~~~g~~~~A~~~f~~m~~---------------------~~~~~~~~l 180 (480)
.|+.+|+...+. .++.- ..+|....++=.+..+++.|+++.+.... ++...|...
T Consensus 405 ~aRvifeka~~V-~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 405 DARVIFEKATKV-PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHhhcC-CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 888888887765 43332 45677777777777778888777765431 123345555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC----------------------------------CCCHH-HHHHHHHHH---Hcc
Q 038395 181 IVGYAMHGFGKDALQLFNEMCRIRL----------------------------------KPSDI-TFIGLLSAC---AHA 222 (480)
Q Consensus 181 i~~~~~~g~~~~A~~l~~~m~~~g~----------------------------------~p~~~-t~~~ll~a~---~~~ 222 (480)
+..--..|-++....+|+++.+..+ -|+.. .|+..|.-+ ...
T Consensus 484 ~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence 5554555555555555555544322 23321 222222211 123
Q ss_pred CCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHH----HcCCHHHHHHHHHhC--CCCCC--HhHHHHHHHHHHhcCChh
Q 038395 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLS----RAGQVEEAYKLVMDM--KIEPD--SVLWGTLLGACRLHGNIA 294 (480)
Q Consensus 223 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m--~~~p~--~~~~~~li~a~~~~~~~~ 294 (480)
..++.|+.+|++..+ +.+|.-. -.+--.|+ +.|....|..++++. ++++. ...|+..|.--...=.+.
T Consensus 564 ~klEraRdLFEqaL~--~Cpp~~a--KtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~ 639 (835)
T KOG2047|consen 564 TKLERARDLFEQALD--GCPPEHA--KTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVP 639 (835)
T ss_pred CCHHHHHHHHHHHHh--cCCHHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCc
Confidence 468899999999985 6665422 22222333 468888899999988 44443 467888887666555567
Q ss_pred HHHHHHHHHHHcCCCCch--hHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 295 LGEKIAEYLISQNLANSG--TYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 295 ~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
....+++++++.-|+... .-.-.+.+-.+.|..+.|..++..-.+-
T Consensus 640 ~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 640 RTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred ccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 778899999998665422 2234566778899999999999776554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.3e-07 Score=85.17 Aligned_cols=271 Identities=13% Similarity=0.037 Sum_probs=206.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038395 42 VSLTTMLTCYAKQGEVAAARVLFDDMEEK---DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACG 118 (480)
Q Consensus 42 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~ 118 (480)
.....-..-+..++++.+..++++...+. ....+..-|.++...|+..+-..+=.+|.+. .+-.+.+|-++.--|.
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHH
Confidence 33444455567889999999999988763 4556777788999999999988888888876 4556789999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHH
Q 038395 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQ 195 (480)
Q Consensus 119 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 195 (480)
..|...+|++.+...... -+.-...|......|+-.|.-|.|...+....+ .....+--+.--|.+.+....|.+
T Consensus 324 ~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHH
Confidence 999999999999988743 122356788899999999999999888866543 111122223445778899999999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhc-CCcC----CccHHHHHHHHHHHcCCHHHHHHHHH
Q 038395 196 LFNEMCRIRLKP-SDITFIGLLSACAHAGLVNEGRRFFNTMKDEY-AIEP----KVEHYGCMVNLLSRAGQVEEAYKLVM 269 (480)
Q Consensus 196 l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~ 269 (480)
.|.+... +.| |....+-+.-..-+.+.+.+|..+|+.....- .+.+ ...+++.|..+|.+.+.+++|+..++
T Consensus 402 Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 402 FFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 9998776 444 55566666655667889999999998876211 1111 23457889999999999999999999
Q ss_pred hC-C-CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHH
Q 038395 270 DM-K-IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLL 317 (480)
Q Consensus 270 ~m-~-~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 317 (480)
+. . .+.+..++.++.-.+...|+++.|...|.+.+-+.|++..+-..|
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELL 529 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHH
Confidence 87 3 334788999999999999999999999999999999986443333
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.3e-07 Score=88.24 Aligned_cols=148 Identities=11% Similarity=0.081 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhc----C---------CcCCc--cHHHHHHHHHH
Q 038395 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY----A---------IEPKV--EHYGCMVNLLS 256 (480)
Q Consensus 192 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~---------~~p~~--~~~~~li~~~~ 256 (480)
.+...+..+...|+++ +|+.|-..|......+-..+++....... . -.|+. .++.-+...|-
T Consensus 129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 3445556666677653 45555555555444444444444443211 0 12333 24455677788
Q ss_pred HcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHH
Q 038395 257 RAGQVEEAYKLVMDM-KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVR 334 (480)
Q Consensus 257 ~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 334 (480)
..|++++|++++++. ...|+ +..|..-...+...|++++|...++.+.++++.|-..-.-.+..+.++|+.++|.+++
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 899999999999876 55666 6677778888889999999999999999998887666666777788899999999998
Q ss_pred HHHHhCCC
Q 038395 335 TLMKEKGV 342 (480)
Q Consensus 335 ~~m~~~~~ 342 (480)
......+.
T Consensus 286 ~~Ftr~~~ 293 (517)
T PF12569_consen 286 SLFTREDV 293 (517)
T ss_pred HhhcCCCC
Confidence 88877665
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.7e-05 Score=73.25 Aligned_cols=246 Identities=13% Similarity=-0.011 Sum_probs=107.8
Q ss_pred cCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHH-HHHHHHHHhCCCHHHH
Q 038395 85 HGLANEALVLFRRMLAEK-VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVG-TALINMYSKCGSLKDA 162 (480)
Q Consensus 85 ~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~li~~y~~~g~~~~A 162 (480)
.++...|...+-.+.... ++-|......+...+...|+.+++...|+.... +.|+.... ....-.+.+.|+++.-
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~---~dpy~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC---ANPDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh---CChhhhhhHHHHHHHHHhccCHhhH
Confidence 344444444433332222 344555666677777777777777777776653 33332211 1111223344555444
Q ss_pred HHHHHhcCC---CChHHHHHHH----------------------------------HHHHhcCChHHHHHHHHHHHHcCC
Q 038395 163 RLVFDRVND---KDVVVWNSMI----------------------------------VGYAMHGFGKDALQLFNEMCRIRL 205 (480)
Q Consensus 163 ~~~f~~m~~---~~~~~~~~li----------------------------------~~~~~~g~~~~A~~l~~~m~~~g~ 205 (480)
.++...+.. .....|-.-. ..+.+.|++++|.-.|+..+...
T Consensus 286 ~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La- 364 (564)
T KOG1174|consen 286 SALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA- 364 (564)
T ss_pred HHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence 444333322 1122232222 33444455555555555444321
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHH-HHHH-HcCCHHHHHHHHHhC-CCCCC-HhHHH
Q 038395 206 KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV-NLLS-RAGQVEEAYKLVMDM-KIEPD-SVLWG 281 (480)
Q Consensus 206 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~m-~~~p~-~~~~~ 281 (480)
+-+...|..|+.+|...|.+.+|.-.-+...+. +..+..+.+.+. ..+. ...--++|.+++++- .++|+ ....+
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~ 442 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVN 442 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHH
Confidence 123344555555555555555544444333321 112222222221 1111 111123444444443 44444 23334
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 038395 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337 (480)
Q Consensus 282 ~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 337 (480)
.+...|..-|..+.+..++++.+...|+. ...+.|...+...+.+.+|...|...
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44445555555555555555555544443 34555555555555555555555443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.3e-06 Score=84.72 Aligned_cols=123 Identities=15% Similarity=0.184 Sum_probs=66.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHh
Q 038395 213 IGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRL 289 (480)
Q Consensus 213 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~ 289 (480)
.-+...|...|+.++|.++.+..... .|+ +..|..-...|-+.|++++|.+.++.. .+.+ |-.+-+-....+.+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 34445555666666666666655532 344 455555556666666666666666555 2222 33344444455556
Q ss_pred cCChhHHHHHHHHHHHcCCCCch-------hH--HHHHHHHHHcCChhHHHHHHHHHH
Q 038395 290 HGNIALGEKIAEYLISQNLANSG-------TY--VLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~~~~~~-------~~--~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
.|++++|.+.+....+.+.+... .| .-.+.+|.+.|++..|++-|..+.
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666666655543311000 11 345666777777777766555543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.5e-06 Score=79.40 Aligned_cols=195 Identities=13% Similarity=-0.004 Sum_probs=99.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHH
Q 038395 147 TALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL-KPSD--ITFIGLLSACA 220 (480)
Q Consensus 147 ~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~~ 220 (480)
..+...+...|++++|.+.+++..+ .+...+..+...|...|++++|..++++...... .|+. ..|..+...+.
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 3444555666666666666665543 2344555566666666666666666666554321 1221 22334555566
Q ss_pred ccCCHHHHHHHHHHhhhhcCCcCCccHH-H--HHHHHHHHcCCHHHHHHH---HHhC-CCCC---CHhHHHHHHHHHHhc
Q 038395 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHY-G--CMVNLLSRAGQVEEAYKL---VMDM-KIEP---DSVLWGTLLGACRLH 290 (480)
Q Consensus 221 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~m-~~~p---~~~~~~~li~a~~~~ 290 (480)
..|+.++|..+++.........+..... + .++..+...|..+.+.++ .... +..| ..........++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 6666666666666654211101111110 1 122222233322222222 1111 1001 112222455666777
Q ss_pred CChhHHHHHHHHHHHcCCC---------CchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 291 GNIALGEKIAEYLISQNLA---------NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 291 ~~~~~a~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
|+.+.|..+++.+....-. .........-++...|++++|.+.+.......
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8888888888777662211 22344556667789999999999988876654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.6e-08 Score=88.31 Aligned_cols=144 Identities=13% Similarity=0.127 Sum_probs=71.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHH----HHcCCH
Q 038395 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLL----SRAGQV 261 (480)
Q Consensus 186 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~----~~~g~~ 261 (480)
..|++++|++++.+- .+.......+..+.+.++++.|.+.++.|.+ +..| .+...+..++ .-.+.+
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD-~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDED-SILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCC-HHHHHHHHHHHHHHHTTTCC
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCc-HHHHHHHHHHHHHHhCchhH
Confidence 345555555444321 2233334444555555555555555555542 1222 2222222222 122346
Q ss_pred HHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCh-hHHHHHHHHHH
Q 038395 262 EEAYKLVMDM--KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW-DGVARVRTLMK 338 (480)
Q Consensus 262 ~~A~~~~~~m--~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~ 338 (480)
.+|..+|+++ ...+++.+.+.+..++...|++++|+.++.++.+.+|.++.+...++-+....|+. +.+.+.+.+++
T Consensus 184 ~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 184 QDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp CHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 6666666666 23345566666666666666666666666666666666666666666666666666 44555665555
Q ss_pred h
Q 038395 339 E 339 (480)
Q Consensus 339 ~ 339 (480)
.
T Consensus 264 ~ 264 (290)
T PF04733_consen 264 Q 264 (290)
T ss_dssp H
T ss_pred H
Confidence 4
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.2e-06 Score=80.57 Aligned_cols=291 Identities=15% Similarity=0.120 Sum_probs=201.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC--CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHc
Q 038395 44 LTTMLTCYAKQGEVAAARVLFDDMEE--KD-VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEV-TAVAVLSACGQ 119 (480)
Q Consensus 44 ~~~li~~~~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~~ 119 (480)
+-...+-|.+.|++++|++.+.+..+ || .+.|.....+|...|+++++.+--.+.++ +.|+-+ .+..-.++.-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHh
Confidence 34445556888999999999998875 67 78899999999999999999988877776 567644 66667778888
Q ss_pred cCChHHHHHHHHHHH------------------H----------hC----CCCCchhHHHHHHHHHH---------hCC-
Q 038395 120 IGALESGRWIHSYIE------------------N----------SR----NIKVNVQVGTALINMYS---------KCG- 157 (480)
Q Consensus 120 ~~~~~~a~~~~~~~~------------------~----------~~----~~~~~~~~~~~li~~y~---------~~g- 157 (480)
+|++++++.=..-.. + .. ..-|+.....+....+. +..
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 898887543211110 0 00 11122211111111111 000
Q ss_pred ---CHHHHHHHHHhcC------------C----------C---Ch------HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038395 158 ---SLKDARLVFDRVN------------D----------K---DV------VVWNSMIVGYAMHGFGKDALQLFNEMCRI 203 (480)
Q Consensus 158 ---~~~~A~~~f~~m~------------~----------~---~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 203 (480)
.+.++.+.+..-. + . |. .+.+.-..-+.-.|+.-.|.+-|+..+..
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 1122222221111 0 0 11 11111112233467888899999998876
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHH
Q 038395 204 RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLW 280 (480)
Q Consensus 204 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~ 280 (480)
...++. .|.-+..+|....+.++.+..|+...+ +.| ++.+|-.-.+++.-.+++++|..=|++. .+.|+ +..|
T Consensus 356 ~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~---ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~ 431 (606)
T KOG0547|consen 356 DPAFNS-LYIKRAAAYADENQSEKMWKDFNKAED---LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAY 431 (606)
T ss_pred Ccccch-HHHHHHHHHhhhhccHHHHHHHHHHHh---cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHH
Confidence 444333 266777789999999999999999883 344 4777888888888889999999999988 66664 6667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 281 ~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
--+.-+.-+.+.+++++..|++.++.-|..+..|+....++..+++++.|.+.|+...+.
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 777777778889999999999999999999999999999999999999999999988764
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.1e-07 Score=77.44 Aligned_cols=161 Identities=12% Similarity=0.099 Sum_probs=116.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHH
Q 038395 177 WNSMIVGYAMHGFGKDALQLFNEMCRIRLKP-SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNL 254 (480)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~ 254 (480)
...|.-+|.+.|+...|..-+++..+. .| +..++..+...|.+.|..+.|.+-|+...+ +.|+ -.+.|....-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 444566777777777777777777764 33 345666777777777777777777777763 3444 5566667777
Q ss_pred HHHcCCHHHHHHHHHhCCCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHH
Q 038395 255 LSRAGQVEEAYKLVMDMKIEPD----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGV 330 (480)
Q Consensus 255 ~~~~g~~~~A~~~~~~m~~~p~----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 330 (480)
+|..|++++|...|++.-..|+ ..+|..+.-+..+.|+.+.|...+++.++.+|+.+.+...+.....+.|++..|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 7777888888888877622222 457777777777888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhCCC
Q 038395 331 ARVRTLMKEKGV 342 (480)
Q Consensus 331 ~~~~~~m~~~~~ 342 (480)
...++.....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 888877766654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-05 Score=80.03 Aligned_cols=332 Identities=14% Similarity=0.068 Sum_probs=197.8
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CC-HHHHHH
Q 038395 6 LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ---RSLVSLTTMLTCYAKQGEVAAARVLFDDMEE----KD-VVCWNV 77 (480)
Q Consensus 6 ~~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~-~~~~~~ 77 (480)
+.-|+.+|..|.-+...+|+++.+-+.|++... .....|+.+...|+.+|.-..|..+++.-.. |+ ...+-.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 345888999999999999999999999998653 3446799999999999999999999887543 32 222222
Q ss_pred HHHHHHH-cCChHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHcc-----------CChHHHHHHHHHHHHhCCCCC
Q 038395 78 MIDGYAQ-HGLANEALVLFRRMLAE--KV--EPNEVTAVAVLSACGQI-----------GALESGRWIHSYIENSRNIKV 141 (480)
Q Consensus 78 li~~~~~-~g~~~~A~~~~~~m~~~--g~--~pd~~t~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~ 141 (480)
.-..|.+ -+..+++++.-.+.... +. ......|..+.-+|... ....++.+.++...+..+..|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 2223332 35555555554444431 10 01112222222222211 012234444555444323333
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHhcC----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CC-----------
Q 038395 142 NVQVGTALINMYSKCGSLKDARLVFDRVN----DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RL----------- 205 (480)
Q Consensus 142 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~----------- 205 (480)
++..|-++ -|+..++++.|.+...+.. ..+...|..+.-.+.-.+++.+|+.+.+...+. |.
T Consensus 479 ~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 479 LVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred hHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 33333222 2444455555555444332 234455555555555555555555544433221 00
Q ss_pred --------------------------------------------------------------------------------
Q 038395 206 -------------------------------------------------------------------------------- 205 (480)
Q Consensus 206 -------------------------------------------------------------------------------- 205 (480)
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence
Q ss_pred ----CCCH------HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 038395 206 ----KPSD------ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIE 274 (480)
Q Consensus 206 ----~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 274 (480)
.|+. ..|......+...+..++|...+.+..+- .......|......+...|.+++|.+.|... -+.
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 0000 01112223334444455555444444321 1222344555555666778888888888776 667
Q ss_pred CC-HhHHHHHHHHHHhcCChhHHHH--HHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 275 PD-SVLWGTLLGACRLHGNIALGEK--IAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 275 p~-~~~~~~li~a~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
|+ +.+..++...+...|+...|.. ++..+.+.+|.++..|..|..++-+.|+.+.|.+-|+...+..
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 75 7788899999999999988888 9999999999999999999999999999999999999887654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.4e-07 Score=94.75 Aligned_cols=203 Identities=12% Similarity=0.133 Sum_probs=174.6
Q ss_pred CCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC--------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 038395 138 NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK--------DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209 (480)
Q Consensus 138 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 209 (480)
+-|.+...|-..|......+++++|++++++.... -...|.++++.-...|.-+...++|++..+. .-..
T Consensus 1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~ 1530 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAY 1530 (1710)
T ss_pred cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchH
Confidence 45667788899999999999999999999987642 3468999998888889888999999999874 2234
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHhHHHHHHH
Q 038395 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM----KIEPDSVLWGTLLG 285 (480)
Q Consensus 210 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~li~ 285 (480)
..|..|...|.+.+..++|.++++.|.+.++ -....|...++.+.+..+-+.|..++.+. |-+.......-.+.
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence 5688899999999999999999999998776 66788999999999999999999999887 33335666777777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCcc
Q 038395 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344 (480)
Q Consensus 286 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 344 (480)
.-.++|+.+.+..+|+..+...|.....|...+++-.+.|+.+.++.+|++....++.+
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 78899999999999999999999988999999999999999999999999999988753
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.7e-09 Score=61.78 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=29.2
Q ss_pred ecCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 038395 4 FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMP 37 (480)
Q Consensus 4 ~g~~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 37 (480)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3788888888888888888888888888888884
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.5e-06 Score=71.87 Aligned_cols=195 Identities=12% Similarity=0.021 Sum_probs=116.5
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcC
Q 038395 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHG 188 (480)
Q Consensus 112 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g 188 (480)
.+.-.|.+.|+...|+.-++..++. -+.+..++..+...|.+.|+.+.|.+-|++..+ .+..+.|....-+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 3444455555555555555555542 233344455555556666666666666655432 24455556666666666
Q ss_pred ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHH
Q 038395 189 FGKDALQLFNEMCRIRLKP-SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYK 266 (480)
Q Consensus 189 ~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 266 (480)
++++|...|++......-| -..||..+.-+..+.|+.+.|...|.+..+. .|+ ......+.....+.|++..|..
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchHHHH
Confidence 7777777776666542211 1345666665666777777777777776632 333 4555666677777777777777
Q ss_pred HHHhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 038395 267 LVMDM--KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311 (480)
Q Consensus 267 ~~~~m--~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~ 311 (480)
+++.. ...++..+.-..|..-...||.+.+.+.-..+.+.-|...
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 77766 3346666666666777777777777777777666666543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.8e-05 Score=76.35 Aligned_cols=291 Identities=14% Similarity=0.087 Sum_probs=180.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChh---HHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHH
Q 038395 10 LYVSTSLVDLYARGGDVLSAEKLFATMPQ---RSLV---SLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMID 80 (480)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~---~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~ 80 (480)
...|..+...+...|+.+.+.+.+....+ ++.. ........+...|++++|.+.+++..+ | |...++. ..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hH
Confidence 45566677777778888887666665432 2222 122234456788999999999988664 3 4445553 22
Q ss_pred HHHH----cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHh
Q 038395 81 GYAQ----HGLANEALVLFRRMLAEKVEPNE-VTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155 (480)
Q Consensus 81 ~~~~----~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~ 155 (480)
.+.. .+....+.+.+.. .....|+. .....+...+...|++++|...++...+. .+.+...+..+...|..
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHH
Confidence 3333 3455555555544 22233443 34445666788999999999999999974 45567788889999999
Q ss_pred CCCHHHHHHHHHhcCCC-----Ch--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHccCC
Q 038395 156 CGSLKDARLVFDRVNDK-----DV--VVWNSMIVGYAMHGFGKDALQLFNEMCRIRL-KPSDITF-I--GLLSACAHAGL 224 (480)
Q Consensus 156 ~g~~~~A~~~f~~m~~~-----~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~-~--~ll~a~~~~g~ 224 (480)
.|++++|...+++.... +. ..|..+...+...|++++|+.+|++...... .+..... . .++.-+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 99999999999987642 22 3466788889999999999999999864322 1222211 1 23333344444
Q ss_pred HHHHHHH--HHHhhhhcCCcCCccHH--HHHHHHHHHcCCHHHHHHHHHhCC--CCC---CH----hHHHHHH--HHHHh
Q 038395 225 VNEGRRF--FNTMKDEYAIEPKVEHY--GCMVNLLSRAGQVEEAYKLVMDMK--IEP---DS----VLWGTLL--GACRL 289 (480)
Q Consensus 225 ~~~a~~~--~~~m~~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~--~~p---~~----~~~~~li--~a~~~ 289 (480)
.+.+.+. +...... ........+ .....++...|+.++|..+++.+. ... .. .+-..++ -++..
T Consensus 241 ~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 241 VDVGDRWEDLADYAAW-HFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred CChHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 4433333 2111111 111111222 245566778899999999998871 111 11 1122233 34567
Q ss_pred cCChhHHHHHHHHHHHc
Q 038395 290 HGNIALGEKIAEYLISQ 306 (480)
Q Consensus 290 ~~~~~~a~~~~~~~~~~ 306 (480)
.|+.+.|.+.+...+..
T Consensus 320 ~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 320 EGNYATALELLGPVRDD 336 (355)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 89999999999888763
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.9e-07 Score=83.32 Aligned_cols=247 Identities=12% Similarity=0.037 Sum_probs=153.4
Q ss_pred hcCCHHHHHHHHhhcC-CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 038395 53 KQGEVAAARVLFDDME-EK--DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129 (480)
Q Consensus 53 ~~g~~~~A~~~f~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~ 129 (480)
-.|.+..++.-.+.-. .+ +.....-+.++|...|+++.++. +..... .|.......+...+....+-+.+..-
T Consensus 13 y~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~ 88 (290)
T PF04733_consen 13 YLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESALEE 88 (290)
T ss_dssp CTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred HhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHHHH
Confidence 3566666665444111 11 23345556677777887765543 333332 56655555555444443444444443
Q ss_pred HHHHHHhCCCC-CchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 038395 130 HSYIENSRNIK-VNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208 (480)
Q Consensus 130 ~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 208 (480)
+...... ... .+..+......+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..|
T Consensus 89 l~~~~~~-~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD 163 (290)
T PF04733_consen 89 LKELLAD-QAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED 163 (290)
T ss_dssp HHHCCCT-S---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC
T ss_pred HHHHHHh-ccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 3333322 222 23334444445677788999888888765 45666667788888999999999999998764 333
Q ss_pred HHHHHHHHHHHHc----cCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHH
Q 038395 209 DITFIGLLSACAH----AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGT 282 (480)
Q Consensus 209 ~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ 282 (480)
.+...+..++.. .+.+.+|..+|+++... ..+++.+.+.+.-+....|++++|.+++.+. ...| ++.+...
T Consensus 164 -~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaN 240 (290)
T PF04733_consen 164 -SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLAN 240 (290)
T ss_dssp -HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHH
Confidence 444445554432 34688999999998753 4567788888888889999999999988886 3344 4667777
Q ss_pred HHHHHHhcCCh-hHHHHHHHHHHHcCCCCc
Q 038395 283 LLGACRLHGNI-ALGEKIAEYLISQNLANS 311 (480)
Q Consensus 283 li~a~~~~~~~-~~a~~~~~~~~~~~~~~~ 311 (480)
++......|+. +.+.+.+.++....|..+
T Consensus 241 liv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 241 LIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 88877787877 678888888888888764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.7e-06 Score=82.66 Aligned_cols=284 Identities=17% Similarity=0.195 Sum_probs=185.0
Q ss_pred HHHHHHHhcCChHHHHHHHhhC--CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHH--------HH--------
Q 038395 15 SLVDLYARGGDVLSAEKLFATM--PQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVC--------WN-------- 76 (480)
Q Consensus 15 ~ll~~~~~~g~~~~A~~~~~~m--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~--------~~-------- 76 (480)
+.|+.|.+.|.+..|.+.-..= ...|......+..++.+..-+++|-.+|+++..+|... |.
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarf 699 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARF 699 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh
Confidence 4578888888888776654321 12455555555666666666666666666666543210 11
Q ss_pred -----------HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhH
Q 038395 77 -----------VMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQV 145 (480)
Q Consensus 77 -----------~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 145 (480)
.....+.+.|+++.|+..|-+.. ...-.+.+......+.+|..+++.+... ....-.
T Consensus 700 afp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdq---k~~s~y 767 (1636)
T KOG3616|consen 700 AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQ---KTASGY 767 (1636)
T ss_pred hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhh---cccccc
Confidence 01111223334444443332221 1223344555667888888888877654 333445
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 038395 146 GTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225 (480)
Q Consensus 146 ~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 225 (480)
|..+.+.|+..|+++.|.++|-+.. .++--|..|.+.|+++.|.++-.+.. |.......|..-..-.-..|.+
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf 840 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKF 840 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcch
Confidence 6778889999999999999998753 45667888999999999998876653 3344455666666667788888
Q ss_pred HHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038395 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305 (480)
Q Consensus 226 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~ 305 (480)
.+|.+++-.+. .|+ ..|.+|-+.|..++.+++.++-.-.--..|-..+..-+-..|++..|+.-|-++
T Consensus 841 ~eaeqlyiti~-----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea-- 908 (1636)
T KOG3616|consen 841 AEAEQLYITIG-----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA-- 908 (1636)
T ss_pred hhhhheeEEcc-----Cch-----HHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh--
Confidence 88888776554 354 357889999999999999887731222445666777788888888888776554
Q ss_pred cCCCCchhHHHHHHHHHHcCChhHHHHHHH
Q 038395 306 QNLANSGTYVLLSNIYAAIGNWDGVARVRT 335 (480)
Q Consensus 306 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 335 (480)
.-|.+-.++|-..+.|++|.++-+
T Consensus 909 ------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 909 ------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred ------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 345666778888888888877654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.2e-07 Score=87.11 Aligned_cols=219 Identities=11% Similarity=0.072 Sum_probs=173.2
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHH
Q 038395 117 CGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDA 193 (480)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A 193 (480)
+.+.|++.+|.-.|+..++ .-|.+...|--|.......++-..|+..+++..+ .|....-+|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVk--qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVK--QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHh--hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 4567888888888888887 3566788888888888888888888888888765 3667777888888999999999
Q ss_pred HHHHHHHHHcCCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHH
Q 038395 194 LQLFNEMCRIRLK--------PSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAY 265 (480)
Q Consensus 194 ~~l~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 265 (480)
++.++.-.....+ ++..+-.. ........+....++|-.+....+..+|+.++.+|.-.|--.|.+++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9999887653211 00000000 1222333455666777777666676688889999999999999999999
Q ss_pred HHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 038395 266 KLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 266 ~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
+.|+.. .++| |..+||-|...++...+.++|...|.+++++.|.-..+...|...|...|.+++|.+.|=....
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999988 7777 4789999999999999999999999999999999888999999999999999999998866543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.3e-05 Score=70.73 Aligned_cols=57 Identities=9% Similarity=0.001 Sum_probs=30.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 038395 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 283 li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
+-.++...+++.+|++...++++.+|++..++---..+|.-..++++|..-|+...+
T Consensus 313 ~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 313 LCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred eeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 334444455555555555555555555555555555555555555555555555443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.7e-06 Score=72.25 Aligned_cols=177 Identities=16% Similarity=0.130 Sum_probs=108.4
Q ss_pred CCCHHHHHHHHHhcCC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 038395 156 CGSLKDARLVFDRVND-KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAGLVNEGRRFFN 233 (480)
Q Consensus 156 ~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 233 (480)
.+++..++.+.++.+. .+..+.+.......+.|++++|++-|+...+- |.. ....|+..+. ..+.++.+.|+++..
T Consensus 125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniALa-Hy~~~qyasALk~iS 202 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLALA-HYSSRQYASALKHIS 202 (459)
T ss_pred cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHHH-HHhhhhHHHHHHHHH
Confidence 4555555555555553 34444444444444556666666666655542 333 2344544442 333455566665555
Q ss_pred HhhhhcCCc-------------CC--------ccHHHHHHHH-------HHHcCCHHHHHHHHHhCC----CCCCHhHHH
Q 038395 234 TMKDEYAIE-------------PK--------VEHYGCMVNL-------LSRAGQVEEAYKLVMDMK----IEPDSVLWG 281 (480)
Q Consensus 234 ~m~~~~~~~-------------p~--------~~~~~~li~~-------~~~~g~~~~A~~~~~~m~----~~p~~~~~~ 281 (480)
++.++ |++ || ..+-+.++.+ +.+.|+++.|.+-+.+|| -..|++|..
T Consensus 203 EIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLH 281 (459)
T KOG4340|consen 203 EIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLH 281 (459)
T ss_pred HHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhh
Confidence 55432 322 11 1223444443 457899999999999994 234677776
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHH
Q 038395 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTL 336 (480)
Q Consensus 282 ~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 336 (480)
.+.-. -..+++..+.+-+.-+++.+|-++.+|..++-.|++..-++-|..++.+
T Consensus 282 N~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 282 NQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 55322 2345677778888888889998888999999999999999999888754
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.8e-05 Score=73.58 Aligned_cols=145 Identities=11% Similarity=0.208 Sum_probs=84.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC----ccHHHHHHHHHH
Q 038395 187 HGFGKDALQLFNEMCRIRLKPS------DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK----VEHYGCMVNLLS 256 (480)
Q Consensus 187 ~g~~~~A~~l~~~m~~~g~~p~------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~ 256 (480)
.|+..+-...|.+..+. +.|- ...|..+...|-+.|+++.|+.+|++..+. .. +. ..+|..-.++=.
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V-~y-~~v~dLa~vw~~waemEl 436 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV-PY-KTVEDLAEVWCAWAEMEL 436 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC-Cc-cchHHHHHHHHHHHHHHH
Confidence 35555666666666543 3332 234666777777888888888888877642 11 11 234444455555
Q ss_pred HcCCHHHHHHHHHhC---CCC-----------------CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHH
Q 038395 257 RAGQVEEAYKLVMDM---KIE-----------------PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVL 316 (480)
Q Consensus 257 ~~g~~~~A~~~~~~m---~~~-----------------p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 316 (480)
+..+++.|++++++. |.. ....+|..++..--..|-++....++++++++..-.|..-..
T Consensus 437 rh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N 516 (835)
T KOG2047|consen 437 RHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN 516 (835)
T ss_pred hhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 677777888877766 211 123456666666666677777777777777766554443333
Q ss_pred HHHHHHHcCChhHHHHHH
Q 038395 317 LSNIYAAIGNWDGVARVR 334 (480)
Q Consensus 317 l~~~~~~~g~~~~a~~~~ 334 (480)
.+..+-...-++++.+++
T Consensus 517 yAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 517 YAMFLEEHKYFEESFKAY 534 (835)
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 333344444555565555
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.9e-08 Score=58.18 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=28.3
Q ss_pred CCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 038395 138 NIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170 (480)
Q Consensus 138 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 170 (480)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 788888888888888888888888888888874
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00013 Score=79.77 Aligned_cols=322 Identities=15% Similarity=0.070 Sum_probs=201.0
Q ss_pred HHhcCChHHHHHHHhhCCC----CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC----C------CH--HHHHHHHHHHH
Q 038395 20 YARGGDVLSAEKLFATMPQ----RSLVSLTTMLTCYAKQGEVAAARVLFDDMEE----K------DV--VCWNVMIDGYA 83 (480)
Q Consensus 20 ~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~------~~--~~~~~li~~~~ 83 (480)
....|+++.+...++.++. .+..........+...|++++|...++...+ . .. .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3345666666666666642 1222223344445677888888887765431 1 11 11222334556
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHhC---CC-CCchhHHHHHHHHHHh
Q 038395 84 QHGLANEALVLFRRMLAEKVEPNE----VTAVAVLSACGQIGALESGRWIHSYIENSR---NI-KVNVQVGTALINMYSK 155 (480)
Q Consensus 84 ~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~~li~~y~~ 155 (480)
..|++++|...+++....-...+. ...+.+...+...|+++.|...+....... |. .........+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999887763111122 234445555677899999988888776431 11 1112344566677888
Q ss_pred CCCHHHHHHHHHhcCC-------C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHH
Q 038395 156 CGSLKDARLVFDRVND-------K----DVVVWNSMIVGYAMHGFGKDALQLFNEMCRI--RLKPS--DITFIGLLSACA 220 (480)
Q Consensus 156 ~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~ll~a~~ 220 (480)
.|+++.|...+++... + ....+..+...+...|++++|...+.+.... ...+. ...+..+.....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999888776532 1 1223445556677789999999998887542 11122 233444556677
Q ss_pred ccCCHHHHHHHHHHhhhhcCCcCCccHH-----HHHHHHHHHcCCHHHHHHHHHhCCC-C-CCH----hHHHHHHHHHHh
Q 038395 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHY-----GCMVNLLSRAGQVEEAYKLVMDMKI-E-PDS----VLWGTLLGACRL 289 (480)
Q Consensus 221 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~-~-p~~----~~~~~li~a~~~ 289 (480)
..|+.++|...+.....-..-......+ ...+..+...|+.+.|.+++..... . ... ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8899999999888875321111111111 1122445568999999999877621 1 111 123456677888
Q ss_pred cCChhHHHHHHHHHHHcC----C--CCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 290 HGNIALGEKIAEYLISQN----L--ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~----~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
.|+.++|...++++.... . ....+...+..+|.+.|+.++|...+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999988742 1 123466788889999999999999999887654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00031 Score=68.08 Aligned_cols=143 Identities=14% Similarity=0.101 Sum_probs=98.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--------HhhhhcCCcCCccHHHHHHHHHHHcCC
Q 038395 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN--------TMKDEYAIEPKVEHYGCMVNLLSRAGQ 260 (480)
Q Consensus 189 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~--------~m~~~~~~~p~~~~~~~li~~~~~~g~ 260 (480)
.+.+|.+++...-+....-........+......|+++.|.+++. .+.+ +.-.+.+-.+++..|.+.++
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~ 432 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKD 432 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccC
Confidence 355666666655443212123444555666778899999999998 4442 23345566778888988888
Q ss_pred HHHHHHHHHhC--------CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHH
Q 038395 261 VEEAYKLVMDM--------KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVA 331 (480)
Q Consensus 261 ~~~A~~~~~~m--------~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 331 (480)
-+.|..++.+. ...+. ..+|.-+..--.++|+.++|..+++++.+..|++..+...++.+|++. +.+.|.
T Consensus 433 ~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 433 NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHH
Confidence 77777776655 11222 234444445556789999999999999999999999999999999887 567776
Q ss_pred HHHH
Q 038395 332 RVRT 335 (480)
Q Consensus 332 ~~~~ 335 (480)
.+-+
T Consensus 512 ~l~k 515 (652)
T KOG2376|consen 512 SLSK 515 (652)
T ss_pred HHhh
Confidence 6543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.3e-06 Score=73.63 Aligned_cols=181 Identities=10% Similarity=0.014 Sum_probs=115.5
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CC-h---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHH
Q 038395 142 NVQVGTALINMYSKCGSLKDARLVFDRVND--KD-V---VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD--ITFI 213 (480)
Q Consensus 142 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~ 213 (480)
....+..+...|.+.|++++|...|+++.. |+ . .+|..+..+|.+.|++++|+..|+++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 455566677777778888888888776653 21 1 35666777777788888888888887764322111 1333
Q ss_pred HHHHHHHcc--------CCHHHHHHHHHHhhhhcCCcCCcc-HHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHH
Q 038395 214 GLLSACAHA--------GLVNEGRRFFNTMKDEYAIEPKVE-HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284 (480)
Q Consensus 214 ~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li 284 (480)
.+..++... |+.++|.+.|+.+.+. .|+.. .+..+... +...... ......+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHHHH
Confidence 344444433 5677777777777643 34422 22111111 0000000 00112455
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCC---chhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 285 GACRLHGNIALGEKIAEYLISQNLAN---SGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 285 ~a~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
..+...|+++.|...++.+++..|++ +..+..+..+|.+.|++++|...++.+..+
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 67888999999999999999987654 468889999999999999999999888754
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00032 Score=68.69 Aligned_cols=314 Identities=13% Similarity=0.098 Sum_probs=174.7
Q ss_pred hcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCChHHHHHHH
Q 038395 22 RGGDVLSAEKLFATMPQ---RSLVSLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQHGLANEALVLF 95 (480)
Q Consensus 22 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~ 95 (480)
..|+.++|......... ++.+.|..+.-.+-...++++|++.|..... | |...|.-|.-.-++.|+++.....-
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred cccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 34555555555554433 2345566666666666667777776665442 2 4455555555555666666665555
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHH------HHHHhCCCHHHHHHHHHh
Q 038395 96 RRMLAEKVEP-NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI------NMYSKCGSLKDARLVFDR 168 (480)
Q Consensus 96 ~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li------~~y~~~g~~~~A~~~f~~ 168 (480)
.++.+. .| ....|.....+.--.|+...|..+.+...+...-.|+...+.-.. ....+.|.+++|.+.+..
T Consensus 133 ~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 133 NQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 555543 33 334566666666667777888888877777522245554443322 234456777777777666
Q ss_pred cCCC--ChH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-ccCCHHHHH-HHHHHhhhhc----
Q 038395 169 VNDK--DVV-VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA-HAGLVNEGR-RFFNTMKDEY---- 239 (480)
Q Consensus 169 m~~~--~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~-~~~~~m~~~~---- 239 (480)
-... |-. .-.+....+.+.++.++|..++..+... .||..-|...+..+. ...+.-++. .+|....+.+
T Consensus 211 ~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e 288 (700)
T KOG1156|consen 211 NEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE 288 (700)
T ss_pred hhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc
Confidence 5432 222 2233455667778888888888888774 566666655444333 222222222 3333332211
Q ss_pred -----------------------------CCcCCccHHHHHHHHHHHcCCHHH----HHHHHHhC-C------------C
Q 038395 240 -----------------------------AIEPKVEHYGCMVNLLSRAGQVEE----AYKLVMDM-K------------I 273 (480)
Q Consensus 240 -----------------------------~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m-~------------~ 273 (480)
|++ .++..+...|-.-...+= +..+...+ + .
T Consensus 289 ~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p---~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E 365 (700)
T KOG1156|consen 289 CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP---SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQE 365 (700)
T ss_pred cchhccHHHhCcchhHHHHHHHHHHHhhcCCC---chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccC
Confidence 111 122222222221111110 11112222 1 1
Q ss_pred CCCHhHHHH--HHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 038395 274 EPDSVLWGT--LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 274 ~p~~~~~~~--li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 342 (480)
.|....|.. ++..+-..|+++.|+...+.++..-|.-+..|..-++++...|+.++|...+++..+...
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 455555543 455666778888888888888877777667777777888888888888888887766543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.8e-05 Score=80.96 Aligned_cols=226 Identities=16% Similarity=0.192 Sum_probs=172.6
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC-----chhHHHHHHHHHHhCCCHHHHHHHHHhcCCC--ChHHHH
Q 038395 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV-----NVQVGTALINMYSKCGSLKDARLVFDRVNDK--DVVVWN 178 (480)
Q Consensus 106 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--~~~~~~ 178 (480)
....|...+....+.++.+.|+++.+++.+. +.+ -..+|.+++++-..-|.-+...++|+++.+- ....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t--IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT--INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh--CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 4557878888888999999999999998874 322 2457888888888888888899999998763 346788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC---ccHHHHHHHHH
Q 038395 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK---VEHYGCMVNLL 255 (480)
Q Consensus 179 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~ 255 (480)
.|...|.+.++.++|.++|+.|.+. ..-....|...+..+.+.++-+.|..++.++.+. -|. .....-.+++-
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHHH
Confidence 9999999999999999999999875 3356678888999999999999999999988853 344 33445556677
Q ss_pred HHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--Cch-hHHHHHHHHHHcCChhHH
Q 038395 256 SRAGQVEEAYKLVMDM--KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA--NSG-TYVLLSNIYAAIGNWDGV 330 (480)
Q Consensus 256 ~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~--~~~-~~~~l~~~~~~~g~~~~a 330 (480)
.+.|+.+.+..+|+.. ..+.....|+.++..-.++|+.+.++.+|++++.+... ... .|.-.+..--..|+-+.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 7899999999999887 22235678999999999999999999999999997643 333 344444444455665555
Q ss_pred HHHHHHH
Q 038395 331 ARVRTLM 337 (480)
Q Consensus 331 ~~~~~~m 337 (480)
..+-.+.
T Consensus 1691 E~VKarA 1697 (1710)
T KOG1070|consen 1691 EYVKARA 1697 (1710)
T ss_pred HHHHHHH
Confidence 5544433
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00028 Score=69.08 Aligned_cols=326 Identities=12% Similarity=0.051 Sum_probs=211.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCC--C-CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHH
Q 038395 11 YVSTSLVDLYARGGDVLSAEKLFATMP--Q-RSLVSLTTMLTCYAKQGEVAAARVLFDDMEE---KDVVCWNVMIDGYAQ 84 (480)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~A~~~~~~m~--~-~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 84 (480)
+-|..+.-.+-...++++|.+.|.... + .|...|.-+.-.-++.|+++.....-.+..+ .....|..+..++.-
T Consensus 76 vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L 155 (700)
T KOG1156|consen 76 VCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL 155 (700)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 345555555555678999999999764 3 4667788777777888888887777666654 355689999999999
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHH------HHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCC
Q 038395 85 HGLANEALVLFRRMLAEKV-EPNEVTAVAVLS------ACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157 (480)
Q Consensus 85 ~g~~~~A~~~~~~m~~~g~-~pd~~t~~~ll~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 157 (480)
.|++..|..+.++..+... .|+...+.-... .....|.++.|.+.+...... +......-..-.+.+.+.+
T Consensus 156 ~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~ 233 (700)
T KOG1156|consen 156 LGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLG 233 (700)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHh
Confidence 9999999999999887642 466655543322 245667788888777666542 3333344456677889999
Q ss_pred CHHHHHHHHHhcCCC--ChHHHHH-HHHHHHhcCChHHHH-HHHHH----------------------------------
Q 038395 158 SLKDARLVFDRVNDK--DVVVWNS-MIVGYAMHGFGKDAL-QLFNE---------------------------------- 199 (480)
Q Consensus 158 ~~~~A~~~f~~m~~~--~~~~~~~-li~~~~~~g~~~~A~-~l~~~---------------------------------- 199 (480)
++++|..++..+..+ |..-|+- +..++.+-.+.-+++ .+|..
T Consensus 234 ~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~ 313 (700)
T KOG1156|consen 234 QLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRP 313 (700)
T ss_pred hHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHH
Confidence 999999999988764 4444333 333333222222222 33333
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHH----HHHHHHHhhhhcC----------CcCCcc--HHHHHHHHHHHcCCHHH
Q 038395 200 MCRIRLKPSDITFIGLLSACAHAGLVNE----GRRFFNTMKDEYA----------IEPKVE--HYGCMVNLLSRAGQVEE 263 (480)
Q Consensus 200 m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~m~~~~~----------~~p~~~--~~~~li~~~~~~g~~~~ 263 (480)
+.+.|+++ +|..+.+.+-.....+- +..+...+... | -+|+.. ++-.++..|-+.|+++.
T Consensus 314 ~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~-~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~ 389 (700)
T KOG1156|consen 314 LLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGT-GMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEV 389 (700)
T ss_pred HhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccc-cCCCcccccccCCchHHHHHHHHHHHHHHHcccHHH
Confidence 33344433 22223322222111111 11222222110 1 034433 44567888999999999
Q ss_pred HHHHHHhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 264 AYKLVMDM-KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 264 A~~~~~~m-~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
|..+++.. +-.|+ +..|..=.+.+...|+++.|...++++.+++-.|...-.--+.-..++++.++|.++.....+.|
T Consensus 390 A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 390 ALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 99999987 65676 44565666788899999999999999999887664332244455568899999999998887776
Q ss_pred C
Q 038395 342 V 342 (480)
Q Consensus 342 ~ 342 (480)
.
T Consensus 470 ~ 470 (700)
T KOG1156|consen 470 F 470 (700)
T ss_pred c
Confidence 4
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=9.3e-06 Score=78.11 Aligned_cols=214 Identities=17% Similarity=0.206 Sum_probs=152.4
Q ss_pred HHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCChHHH
Q 038395 18 DLYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQHGLANEA 91 (480)
Q Consensus 18 ~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A 91 (480)
.-+.+.|++.+|.-+|+...+ | +...|.-|.......++=..|+..+++..+ | |....-+|.-.|...|.-.+|
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 345678889999888887654 3 457888888888888888888888888765 3 566777888888888999999
Q ss_pred HHHHHHHHHCCCC--------CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHH
Q 038395 92 LVLFRRMLAEKVE--------PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163 (480)
Q Consensus 92 ~~~~~~m~~~g~~--------pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 163 (480)
++.++..+....+ ++..+-.. +.+.....+....++|-.+....+...|+.++..|.-.|--.|+++.|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9988887653210 00000000 1111222334455555555543355577888888888888899999999
Q ss_pred HHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHhh
Q 038395 164 LVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI--TFIGLLSACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 164 ~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~ 236 (480)
..|+.... .|...||-|...++...+.++|+..|++.++ ++|+-+ -|+ |.-+|.+.|.+++|...|-.+.
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyN-lgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYN-LGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehh-hhhhhhhhhhHHHHHHHHHHHH
Confidence 99988764 3778899999999988899999999998887 566643 344 4446888899999888876655
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.7e-05 Score=79.13 Aligned_cols=306 Identities=12% Similarity=0.085 Sum_probs=143.7
Q ss_pred hhHHHHHH--HHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------------CCHHH
Q 038395 10 LYVSTSLV--DLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE-------------KDVVC 74 (480)
Q Consensus 10 ~~~~~~ll--~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-------------~~~~~ 74 (480)
..+-.+++ +.|..-|+++.|.+-...++ +...|..|.+.|.+..++|-|.-.+..|.. ++ ..
T Consensus 726 ~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~ 802 (1416)
T KOG3617|consen 726 ESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-ED 802 (1416)
T ss_pred HHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-ch
Confidence 33444444 34555677777765554443 445677777777777777777766666653 11 11
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHH
Q 038395 75 WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYS 154 (480)
Q Consensus 75 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 154 (480)
-.-..-.-.+.|..++|+.+|++-.. |-.+=..|-..|.+++|.++-+.--+. -+ ..+|.....-+-
T Consensus 803 eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi-HL---r~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 803 EAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI-HL---RNTYYNYAKYLE 869 (1416)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce-eh---hhhHHHHHHHHH
Confidence 11111223455666777776666443 222223344556666666554332211 11 123333344444
Q ss_pred hCCCHHHHHHHHHhcCCC-----------------------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHc--------
Q 038395 155 KCGSLKDARLVFDRVNDK-----------------------DVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-------- 203 (480)
Q Consensus 155 ~~g~~~~A~~~f~~m~~~-----------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------- 203 (480)
..++.+.|++.|++...+ |...|.=...-+-..|+.+.|+.+|...+..
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C 949 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKC 949 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEe
Confidence 455566665555543321 2222222223333455666666555544321
Q ss_pred --C----------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcC-C----cCCccHHHHHHHH--HHHcCCHHHH
Q 038395 204 --R----------LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA-I----EPKVEHYGCMVNL--LSRAGQVEEA 264 (480)
Q Consensus 204 --g----------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-~----~p~~~~~~~li~~--~~~~g~~~~A 264 (480)
| -.-|....-.|...|-+.|++.+|..+|-+...-.+ + +.|. -..|... .++..+.-.|
T Consensus 950 ~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~--~d~L~nlal~s~~~d~v~a 1027 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM--KDRLANLALMSGGSDLVSA 1027 (1416)
T ss_pred eccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHhhcCchhHHHH
Confidence 0 012334444556666666666666666655441000 0 0000 0111111 1122234444
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHH---------HHH-cCCC-CchhHHHHHHHHHHcCChhHHHHH
Q 038395 265 YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY---------LIS-QNLA-NSGTYVLLSNIYAAIGNWDGVARV 333 (480)
Q Consensus 265 ~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~---------~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 333 (480)
-++|++.|... ..-+..|.+.|.+.+|+++.-+ +.+ ++|. ++....--.+.+.....+++|..+
T Consensus 1028 ArYyEe~g~~~-----~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~l 1102 (1416)
T KOG3617|consen 1028 ARYYEELGGYA-----HKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNL 1102 (1416)
T ss_pred HHHHHHcchhh-----hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHH
Confidence 55555554221 1222345566666666554321 111 3443 454555555566666667777666
Q ss_pred HHHHH
Q 038395 334 RTLMK 338 (480)
Q Consensus 334 ~~~m~ 338 (480)
+-..+
T Consensus 1103 L~~ar 1107 (1416)
T KOG3617|consen 1103 LCLAR 1107 (1416)
T ss_pred HHHHH
Confidence 65543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00047 Score=68.87 Aligned_cols=301 Identities=12% Similarity=0.106 Sum_probs=192.8
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 038395 39 RSLVSLTTMLTCYAKQGEVAAARVLFDDMEE---KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP-NEVTAVAVL 114 (480)
Q Consensus 39 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll 114 (480)
-|...|..+.-+...+|+++.+-+.|++... .....|+.+...|...|....|+.+++.-....-.| |...+...-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 3667888888899999999999999999764 345689999999999999999999998766543234 344444444
Q ss_pred HHHH-ccCChHHHHHHHHHHHHhCC---CCCchhHHHHHHHHHHhC-----------CCHHHHHHHHHhcCC-----CCh
Q 038395 115 SACG-QIGALESGRWIHSYIENSRN---IKVNVQVGTALINMYSKC-----------GSLKDARLVFDRVND-----KDV 174 (480)
Q Consensus 115 ~~~~-~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~li~~y~~~-----------g~~~~A~~~f~~m~~-----~~~ 174 (480)
..|. +.+..+++..+-.++....+ -......|-.+.-+|... ....++.+.+++..+ |++
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 4453 56777887777777665211 111233444444445432 123456677776643 344
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC----------
Q 038395 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK---------- 244 (480)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---------- 244 (480)
..|- .--|+..++.+.|++..++..+.+-.-+...|..+.-.++..+++.+|+.+.+....++|....
T Consensus 481 if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 481 IFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred HHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 4443 3346778899999999999998766667778877777777788888888877766655443100
Q ss_pred --------cc----------------------------------------------------------------------
Q 038395 245 --------VE---------------------------------------------------------------------- 246 (480)
Q Consensus 245 --------~~---------------------------------------------------------------------- 246 (480)
..
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~ 638 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTV 638 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccc
Confidence 00
Q ss_pred -------------HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 038395 247 -------------HYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311 (480)
Q Consensus 247 -------------~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~ 311 (480)
.|....+.+.+.+..++|...+.+. ++.| ....|......+...|..++|.+.|..+..++|+++
T Consensus 639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv 718 (799)
T KOG4162|consen 639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV 718 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc
Confidence 1112223333334444444333333 2222 233344444455566777777888888888888877
Q ss_pred hhHHHHHHHHHHcCChhHHHH--HHHHHHhCC
Q 038395 312 GTYVLLSNIYAAIGNWDGVAR--VRTLMKEKG 341 (480)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~~ 341 (480)
....++..++.+.|+..-|.. ++..+.+.+
T Consensus 719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 719 PSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 777888888888887666665 666665543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00074 Score=73.85 Aligned_cols=370 Identities=11% Similarity=0.043 Sum_probs=220.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCChhH--HHHHHHHHHhcCCHHHHHHHHhhcCC----CCHHHHHHHHHHHHHcCC
Q 038395 14 TSLVDLYARGGDVLSAEKLFATMPQRSLVS--LTTMLTCYAKQGEVAAARVLFDDMEE----KDVVCWNVMIDGYAQHGL 87 (480)
Q Consensus 14 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~ 87 (480)
......|...|++.+|..........+... ...........|+++.+...++.++. .+..........+...|+
T Consensus 345 ~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~ 424 (903)
T PRK04841 345 RAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHR 424 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCC
Confidence 334455666677777766665555432211 11222334567888888888888752 122233444556677899
Q ss_pred hHHHHHHHHHHHHCC--C----CCCHH--HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC---chhHHHHHHHHHHhC
Q 038395 88 ANEALVLFRRMLAEK--V----EPNEV--TAVAVLSACGQIGALESGRWIHSYIENSRNIKV---NVQVGTALINMYSKC 156 (480)
Q Consensus 88 ~~~A~~~~~~m~~~g--~----~pd~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~y~~~ 156 (480)
+++|..++.+....- . .|... ....+...+...|+++.+...++.......... .....+.+...+...
T Consensus 425 ~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 504 (903)
T PRK04841 425 YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK 504 (903)
T ss_pred HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc
Confidence 999999998775431 1 11111 122223345678999999999998876311111 112445666778889
Q ss_pred CCHHHHHHHHHhcCC-------CC--hHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHH
Q 038395 157 GSLKDARLVFDRVND-------KD--VVVWNSMIVGYAMHGFGKDALQLFNEMCRI----RLK--P-SDITFIGLLSACA 220 (480)
Q Consensus 157 g~~~~A~~~f~~m~~-------~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~--p-~~~t~~~ll~a~~ 220 (480)
|++++|...+++... +. ..++..+...+...|++++|...+++.... |.. | ....+..+...+.
T Consensus 505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 584 (903)
T PRK04841 505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW 584 (903)
T ss_pred CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 999999999887653 11 234556667788899999999998886542 221 1 2233444555667
Q ss_pred ccCCHHHHHHHHHHhhhhcC-CcCC--ccHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHhHHH-----HHHHHHH
Q 038395 221 HAGLVNEGRRFFNTMKDEYA-IEPK--VEHYGCMVNLLSRAGQVEEAYKLVMDM----KIEPDSVLWG-----TLLGACR 288 (480)
Q Consensus 221 ~~g~~~~a~~~~~~m~~~~~-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~-----~li~a~~ 288 (480)
..|++++|...+........ ..+. ...+..+...+...|++++|.+.+.+. ........+. ..+..+.
T Consensus 585 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (903)
T PRK04841 585 EWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQ 664 (903)
T ss_pred HhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHH
Confidence 78999999999888753211 1121 233444566778899999999888776 1111111111 1223445
Q ss_pred hcCChhHHHHHHHHHHHcCCCCch----hHHHHHHHHHHcCChhHHHHHHHHHHhC----CCccCCceeeEEeCCEEEEE
Q 038395 289 LHGNIALGEKIAEYLISQNLANSG----TYVLLSNIYAAIGNWDGVARVRTLMKEK----GVQKEPGCSSIELSNKVHEF 360 (480)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~s~~~~~~~~~~~ 360 (480)
..|+.+.|...+.......+.... .+..+..++...|++++|...+++.... |........... .
T Consensus 665 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~-------l 737 (903)
T PRK04841 665 MTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLIL-------L 737 (903)
T ss_pred HCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHH-------H
Confidence 678999998887765543222211 1356788899999999999999887653 221111000000 0
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHHCCcc
Q 038395 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYV 390 (480)
Q Consensus 361 ~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 390 (480)
...+...++.+++...+.+.+..-...|+.
T Consensus 738 a~a~~~~G~~~~A~~~L~~Al~la~~~g~~ 767 (903)
T PRK04841 738 NQLYWQQGRKSEAQRVLLEALKLANRTGFI 767 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhCccchh
Confidence 111334566677777777766665566654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.9e-05 Score=68.77 Aligned_cols=119 Identities=6% Similarity=0.044 Sum_probs=92.5
Q ss_pred cCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHH-HhcCC--hhHH
Q 038395 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGAC-RLHGN--IALG 296 (480)
Q Consensus 222 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~-~~~~~--~~~a 296 (480)
.++.+++...++...+. -+.+...|..+...|...|++++|...|++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 56667777777766642 2445777888888888889999998888887 4455 467777777764 56666 4889
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 038395 297 EKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 342 (480)
.++++++++.+|.++.++..+...+...|++++|...++++.+..-
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999999999888899999999999999999999998876643
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1e-05 Score=79.82 Aligned_cols=191 Identities=17% Similarity=0.151 Sum_probs=159.0
Q ss_pred CCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038395 138 NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217 (480)
Q Consensus 138 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 217 (480)
+++|-...-..+...+.++|-...|..+|++. ..|.-.|.+|...|+..+|..+..+-.+ -+||...|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 45666777788899999999999999999985 5788899999999999999999988777 4789999999999
Q ss_pred HHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhH
Q 038395 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIAL 295 (480)
Q Consensus 218 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~ 295 (480)
..-+..-+++|.++++..... .-..+.....+.++++++.+.|+.- .+.| -..+|-.+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888888899999998876532 0111111223468899999988865 5555 46788888888889999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 038395 296 GEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343 (480)
Q Consensus 296 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 343 (480)
|.+.|.....++|++...|+.+..+|.+.|+..+|...+++..+.+..
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~ 585 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ 585 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999999999999999999999887743
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00015 Score=65.77 Aligned_cols=130 Identities=10% Similarity=0.090 Sum_probs=77.0
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---------------CHHHH--
Q 038395 16 LVDLYARGGDVLSAEKLFATMPQ---RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK---------------DVVCW-- 75 (480)
Q Consensus 16 ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---------------~~~~~-- 75 (480)
+...|.+.|++++|..++.-+.+ ++...|..|.-.+.-.|.+.+|..+-...++. |..-|
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 34556678888888888886653 45566777777776777788887776666531 11111
Q ss_pred ------------HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHccCChHHHHHHHHHHHHhCCCCCc
Q 038395 76 ------------NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLS-ACGQIGALESGRWIHSYIENSRNIKVN 142 (480)
Q Consensus 76 ------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~ 142 (480)
-+|.+..-..-.+.+|+++|.+.+.. .|+-...+.-+. +|.++.-++.+.+++.-..+ .++.+
T Consensus 143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~--q~pdS 218 (557)
T KOG3785|consen 143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR--QFPDS 218 (557)
T ss_pred HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH--hCCCc
Confidence 12233333334577888888887764 355555554443 34566666777777776665 34444
Q ss_pred hhHHHHH
Q 038395 143 VQVGTAL 149 (480)
Q Consensus 143 ~~~~~~l 149 (480)
+..-|..
T Consensus 219 tiA~NLk 225 (557)
T KOG3785|consen 219 TIAKNLK 225 (557)
T ss_pred HHHHHHH
Confidence 4444433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.5e-05 Score=69.55 Aligned_cols=231 Identities=12% Similarity=0.051 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccC-ChHHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 038395 74 CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNE-VTAVAVLSACGQIG-ALESGRWIHSYIENSRNIKVNVQVGTALIN 151 (480)
Q Consensus 74 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 151 (480)
+++.+-..+...++.++|+.++.++++. .|+. .+|..--.++...+ ++++++..++.+.+. .+.+..+|+....
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~ 114 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHH
Confidence 4555556666677777777777777763 4433 34444444445555 456777777666653 3445555555444
Q ss_pred HHHhCCCH--HHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 038395 152 MYSKCGSL--KDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226 (480)
Q Consensus 152 ~y~~~g~~--~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 226 (480)
++.+.|+. +++..+++++.+ +|..+|+.....+...|+++++++.++++.+.+.. |...|+.....+.+.+...
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccc
Confidence 44455542 445555554443 34556666666666666666666666666554432 2333333322222221000
Q ss_pred HHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc----CChhHHHHHH
Q 038395 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLH----GNIALGEKIA 300 (480)
Q Consensus 227 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~----~~~~~a~~~~ 300 (480)
+ .....+++.++..++ ...| |...|+-+...+... +...+|...+
T Consensus 194 -------------~----------------~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 194 -------------G----------------LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred -------------c----------------ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 0 000123344444333 3344 456676666666553 3345577777
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHcC------------------ChhHHHHHHHHHH
Q 038395 301 EYLISQNLANSGTYVLLSNIYAAIG------------------NWDGVARVRTLMK 338 (480)
Q Consensus 301 ~~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 338 (480)
.++...+|.++.+...|+..|+... ..++|.++++.+.
T Consensus 245 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 245 LEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 7777777777777777888887532 2366888887773
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.6e-05 Score=70.40 Aligned_cols=181 Identities=14% Similarity=0.047 Sum_probs=127.7
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCch---hHHHHHHHHHHhCCCHHHHHHHHHhcCC--C-Ch---H
Q 038395 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNV---QVGTALINMYSKCGSLKDARLVFDRVND--K-DV---V 175 (480)
Q Consensus 105 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~---~ 175 (480)
.....+......+...|+++.|...++.+.+. .+.+. ..+..+...|.+.|++++|...|+++.+ | +. .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 35667888888899999999999999999874 23332 4667888999999999999999998864 2 12 2
Q ss_pred HHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCcc
Q 038395 176 VWNSMIVGYAMH--------GFGKDALQLFNEMCRIRLKPSDI-TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246 (480)
Q Consensus 176 ~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 246 (480)
++..+..++.+. |+.++|.+.|+++... .|+.. ....+... .. .. .... .
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~------~~~~---------~ 167 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LR------NRLA---------G 167 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HH------HHHH---------H
Confidence 455566666654 7889999999999875 45432 22221111 00 00 0000 0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038395 247 HYGCMVNLLSRAGQVEEAYKLVMDM----KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308 (480)
Q Consensus 247 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~ 308 (480)
....+...|.+.|++++|...+++. +-.| ....|..+..++...|+.++|...++.+....|
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1124567788999999999988887 2223 356888999999999999999998888876655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00031 Score=67.41 Aligned_cols=195 Identities=15% Similarity=0.108 Sum_probs=123.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCC--ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--C----HHHHHHHHH
Q 038395 146 GTALINMYSKCGSLKDARLVFDRVNDK--DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP--S----DITFIGLLS 217 (480)
Q Consensus 146 ~~~li~~y~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~----~~t~~~ll~ 217 (480)
...+.++..+..+++.|.+-+.....- +..-++....+|...|++.+....-....+.|-.. + ...+..+-.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 455666666666777776666655432 33334445556666666555554444443333210 0 011222233
Q ss_pred HHHccCCHHHHHHHHHHhhhhcCCcCCccHH-------------------------HHHHHHHHHcCCHHHHHHHHHhC-
Q 038395 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY-------------------------GCMVNLLSRAGQVEEAYKLVMDM- 271 (480)
Q Consensus 218 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-------------------------~~li~~~~~~g~~~~A~~~~~~m- 271 (480)
++.+.++.+.|...|......+ ..|+...- -.=...+.+.|++..|...+.++
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~-Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEH-RTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhh-cCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4555566666666666655432 22222110 01133456788999999999888
Q ss_pred CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 272 KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 272 ~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
...| |...|....-+|.+.|++..|+.-.+..++++|+....|.-=..++....+|+.|.+.|++-.+..
T Consensus 386 kr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 386 KRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred hcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3345 578888888899999999999999999999999988888877888888889999999888776654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.1e-05 Score=77.67 Aligned_cols=206 Identities=15% Similarity=0.158 Sum_probs=92.6
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 038395 47 MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126 (480)
Q Consensus 47 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a 126 (480)
+...+.++|-..+|..+|+++ ..|.-.|.+|...|+..+|..+..+..+ -+||+..|..+.+......-+++|
T Consensus 404 laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEka 476 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKA 476 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHH
Confidence 344445555555555555543 3444455555555555555555444444 244555555555444444444444
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038395 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI 203 (480)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 203 (480)
.++.+..... ....+.....+.++++++.+.|+.-.. --..+|-.+..+..+.++++.|.+.|..-..
T Consensus 477 wElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt- 547 (777)
T KOG1128|consen 477 WELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT- 547 (777)
T ss_pred HHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh-
Confidence 4444333221 111111112224455555555543322 1233454444455555555555555554433
Q ss_pred CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 204 RLKPS-DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 204 g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
..|| ...|+.+-.+|.+.++-.+|...+.+..+ +. .-+...|...+....+.|.+++|.+.+.++
T Consensus 548 -L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 548 -LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred -cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 2333 23455555555555555555555555442 12 222333333444444555555555555444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00017 Score=71.35 Aligned_cols=239 Identities=14% Similarity=0.166 Sum_probs=140.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCC
Q 038395 79 IDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158 (480)
Q Consensus 79 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 158 (480)
|.+-.....|.+|+.+++.++... .-.--|..+..-|+..|+++.|.++|...- .++-.|+||.+.|+
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhcccc
Confidence 344556677888888887776642 223346667777888888888888776542 24566788888888
Q ss_pred HHHHHHHHHhcCCC--ChHHHHHHHHHHHhcCChHHHHHHH-------------HHH------HH--cCCCCC--HHHHH
Q 038395 159 LKDARLVFDRVNDK--DVVVWNSMIVGYAMHGFGKDALQLF-------------NEM------CR--IRLKPS--DITFI 213 (480)
Q Consensus 159 ~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l~-------------~~m------~~--~g~~p~--~~t~~ 213 (480)
+++|.++-.+...| .+..|-+-..-+-.+|++.+|.++| ++. .+ ....|+ ..|-.
T Consensus 807 w~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~ 886 (1636)
T KOG3616|consen 807 WEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHK 886 (1636)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHH
Confidence 88888887776655 2334444444444455544444433 221 10 001222 23455
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCC-C---CHhHHHH------H
Q 038395 214 GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIE-P---DSVLWGT------L 283 (480)
Q Consensus 214 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p---~~~~~~~------l 283 (480)
.+..-+-..|++..|...|-+.. -|.+-+++|-..+.+++|.++-+.-|-. . -...|.. -
T Consensus 887 ~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaa 956 (1636)
T KOG3616|consen 887 HFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAA 956 (1636)
T ss_pred HHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHH
Confidence 56666677788888877665544 2567788888899999998887665311 1 1223321 1
Q ss_pred HHHHHhcCC-------------hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 284 LGACRLHGN-------------IALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 284 i~a~~~~~~-------------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
+..+-++|- ++.|..+.+...+.. .+....-+..-+-..|++++|-+-+-+..+.+
T Consensus 957 vkllnk~gll~~~id~a~d~~afd~afdlari~~k~k--~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 957 VKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK--MGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc--CccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 222333443 333444333333322 22345556666778899999988777666554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.002 Score=62.76 Aligned_cols=307 Identities=9% Similarity=0.083 Sum_probs=152.5
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHH--HHH--HHHcCCh
Q 038395 16 LVDLYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVM--IDG--YAQHGLA 88 (480)
Q Consensus 16 ll~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l--i~~--~~~~g~~ 88 (480)
=++.+.+.|++++|.+...++.. | +......-+-+..+.+++++|+.+.+.-..- .+++.. =.+ .-+.+..
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 35677788888888888877764 3 4455666666777788888888665543321 122222 233 3356777
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC-chh----------------------
Q 038395 89 NEALVLFRRMLAEKVEPNE-VTAVAVLSACGQIGALESGRWIHSYIENSRNIKV-NVQ---------------------- 144 (480)
Q Consensus 89 ~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~---------------------- 144 (480)
++|+..++ |..++. .+...-...|-+.++++++..+|+.+.+. +.+. +..
T Consensus 96 Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn-~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~ 169 (652)
T KOG2376|consen 96 DEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN-NSDDQDEERRANLLAVAAALQVQLLQSVPE 169 (652)
T ss_pred HHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHhhhHHHHHhccC
Confidence 77777766 333333 35555555677777777777777777654 2111 111
Q ss_pred ----HHHHH---HHHHHhCCCHHHHHHHHHhcC--------CCC-----hH-----HHHHHHHHHHhcCChHHHHHHHHH
Q 038395 145 ----VGTAL---INMYSKCGSLKDARLVFDRVN--------DKD-----VV-----VWNSMIVGYAMHGFGKDALQLFNE 199 (480)
Q Consensus 145 ----~~~~l---i~~y~~~g~~~~A~~~f~~m~--------~~~-----~~-----~~~~li~~~~~~g~~~~A~~l~~~ 199 (480)
+|..+ .-.+...|++..|+++++... +.| .. .--.|.-.+...|+..+|..++..
T Consensus 170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~ 249 (652)
T KOG2376|consen 170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVD 249 (652)
T ss_pred CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 12111 223344555555555555441 110 00 111122334445555555555555
Q ss_pred HHHcCCCCCHHH----HHHHHHHHHccCCHHH--HHHHHHHhhhhc----------CCcCCccHHHHHHHHHHHcCCHHH
Q 038395 200 MCRIRLKPSDIT----FIGLLSACAHAGLVNE--GRRFFNTMKDEY----------AIEPKVEHYGCMVNLLSRAGQVEE 263 (480)
Q Consensus 200 m~~~g~~p~~~t----~~~ll~a~~~~g~~~~--a~~~~~~m~~~~----------~~~p~~~~~~~li~~~~~~g~~~~ 263 (480)
.+... .+|... -|.|+ +.....++-. ++..++...... .-.-...--++++.+| .+.-+.
T Consensus 250 ~i~~~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q 325 (652)
T KOG2376|consen 250 IIKRN-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQ 325 (652)
T ss_pred HHHhc-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHH
Confidence 55442 223211 11111 1111111111 111111110000 0000000112222222 234445
Q ss_pred HHHHHHhCC-CCCCHhHHHHHHHHHH-hcC-ChhHHHHHHHHHHHcCCCC-chhHHHHHHHHHHcCChhHHHHHHH
Q 038395 264 AYKLVMDMK-IEPDSVLWGTLLGACR-LHG-NIALGEKIAEYLISQNLAN-SGTYVLLSNIYAAIGNWDGVARVRT 335 (480)
Q Consensus 264 A~~~~~~m~-~~p~~~~~~~li~a~~-~~~-~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 335 (480)
+.++-...+ ..|. ..+.+++..+. ... ....+..++....+..|.+ ......++......|+++.|.+++.
T Consensus 326 ~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 326 VRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 555555553 2333 34444544433 222 3666777777777777876 3455667777889999999999999
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.6e-05 Score=76.96 Aligned_cols=158 Identities=9% Similarity=0.026 Sum_probs=119.1
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHH
Q 038395 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGC 250 (480)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 250 (480)
++..+-.|.....+.|.+++|..+++...+ +.||. .....+...+.+.+.+++|....++.... .|+ ......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHHH
Confidence 577788888888999999999999999887 46665 45566778888999999999999988842 555 566677
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChh
Q 038395 251 MVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWD 328 (480)
Q Consensus 251 li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 328 (480)
+..++.+.|++++|..+|++. ...|+ ..+|..+..++...|+.++|...|+++++...+-...|+-++ ++..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~ 233 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLN 233 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHH
Confidence 778888999999999999988 23444 778888889999999999999999999986655445554333 2333
Q ss_pred HHHHHHHHHHhCC
Q 038395 329 GVARVRTLMKEKG 341 (480)
Q Consensus 329 ~a~~~~~~m~~~~ 341 (480)
.-...++.+.-.+
T Consensus 234 ~~~~~~~~~~~~~ 246 (694)
T PRK15179 234 ADLAALRRLGVEG 246 (694)
T ss_pred HHHHHHHHcCccc
Confidence 3444555554333
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.9e-05 Score=64.78 Aligned_cols=154 Identities=12% Similarity=0.120 Sum_probs=88.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHH
Q 038395 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR 257 (480)
Q Consensus 178 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 257 (480)
..+-..+...|+.+....+....... ..-|............+.|++.+|...+++... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 33444555555555555555543321 112333333455555666666666666666652 334556666666666666
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHH
Q 038395 258 AGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVR 334 (480)
Q Consensus 258 ~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 334 (480)
.|++++|..-|.+. .+.| ++...+.|...+.-.|+.+.|+.++.......+.+...-..|.......|++++|..+-
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 66666666655554 3333 34556666666666677777777666666666666666666666666667766666553
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.7e-07 Score=53.35 Aligned_cols=35 Identities=43% Similarity=0.761 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 038395 73 VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNE 107 (480)
Q Consensus 73 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 107 (480)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.6e-05 Score=65.47 Aligned_cols=107 Identities=9% Similarity=-0.046 Sum_probs=70.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 038395 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACR 288 (480)
Q Consensus 212 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~ 288 (480)
+.....++...|++++|...|+.... +.| +...+..+..++.+.|++++|...|++. ...| +...|..+..++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 33445566677777777777777663 233 4556666677777777777777777776 3334 4666777777777
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 038395 289 LHGNIALGEKIAEYLISQNLANSGTYVLLSNIY 321 (480)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 321 (480)
..|+.++|...++.+++..|+++..+.....+.
T Consensus 104 ~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 777777777777777777777766665544443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00038 Score=61.87 Aligned_cols=149 Identities=12% Similarity=0.034 Sum_probs=77.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC-------------ch-----
Q 038395 82 YAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV-------------NV----- 143 (480)
Q Consensus 82 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~----- 143 (480)
..+.|++++|++-|+...+-|--.....|+..+.- .+.++...|.....+++.+ |+.. |+
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgN 231 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGN 231 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccc
Confidence 34566777777777766654333334455544433 3456667777766666665 4321 10
Q ss_pred ----------hHHHHHHHHHHhCCCHHHHHHHHHhcCCC-----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 038395 144 ----------QVGTALINMYSKCGSLKDARLVFDRVNDK-----DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208 (480)
Q Consensus 144 ----------~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 208 (480)
..+|.-...+.+.|+++.|.+.+-.|+.+ |.+|...+.-. -..+++.+..+-+.-+.+.+. ..
T Consensus 232 t~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP 309 (459)
T KOG4340|consen 232 TLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FP 309 (459)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CC
Confidence 11122223345566777777777777643 44444333211 113344444444444444332 23
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHH
Q 038395 209 DITFIGLLSACAHAGLVNEGRRFFNT 234 (480)
Q Consensus 209 ~~t~~~ll~a~~~~g~~~~a~~~~~~ 234 (480)
..||..++-.||+..-++.|-.++.+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 45666666667776666666665543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00085 Score=62.88 Aligned_cols=209 Identities=11% Similarity=0.011 Sum_probs=143.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038395 43 SLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQHG-LANEALVLFRRMLAEKVEPNEVTAVAVLSACG 118 (480)
Q Consensus 43 ~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~ 118 (480)
++..+-..+...++.++|+.+.+++.+ | +..+|+.--..+...| .++++++.++++.+.. +-+..+|+...-.+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 566666777788899999999999875 3 4456777666777777 6799999999998864 334556765555555
Q ss_pred ccCCh--HHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhc---CCh
Q 038395 119 QIGAL--ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMH---GFG 190 (480)
Q Consensus 119 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~---g~~ 190 (480)
+.+.. +.+..+.+.+.+. -+.|..+|+....++.+.|+++++++.++++.+ +|..+|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 66653 6778888888863 566888999999999999999999999999876 4777888877666554 222
Q ss_pred ----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----CCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHH
Q 038395 191 ----KDALQLFNEMCRIRLKPSDITFIGLLSACAHA----GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR 257 (480)
Q Consensus 191 ----~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 257 (480)
+++++...++.... +-|...|+.+...+... +...+|..++...... + ..+......|++.|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~-~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK-D-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc-c-CCcHHHHHHHHHHHHh
Confidence 45666666666542 22455666666666552 3345566666665531 1 2234455666676664
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.4e-05 Score=65.81 Aligned_cols=106 Identities=7% Similarity=-0.041 Sum_probs=91.0
Q ss_pred HHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038395 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308 (480)
Q Consensus 231 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~ 308 (480)
+++... .+.|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++.+.+|
T Consensus 15 ~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 15 ILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 444444 23454 3556778889999999999999998 5555 588899999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 309 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
.++.++..+..++...|+.++|...++...+..
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999987654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.32 E-value=1e-06 Score=52.78 Aligned_cols=35 Identities=34% Similarity=0.554 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 038395 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209 (480)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 209 (480)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.2e-05 Score=64.77 Aligned_cols=153 Identities=11% Similarity=0.132 Sum_probs=106.3
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 038395 150 INMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR 229 (480)
Q Consensus 150 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 229 (480)
+-.|...|+++......+.+..+. ..|...++.++++..++...+.. +.|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 346777777766654443332221 01122556677777777766643 446677888888888888888888
Q ss_pred HHHHHhhhhcCCcC-CccHHHHHHHH-HHHcCC--HHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 038395 230 RFFNTMKDEYAIEP-KVEHYGCMVNL-LSRAGQ--VEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYL 303 (480)
Q Consensus 230 ~~~~~m~~~~~~~p-~~~~~~~li~~-~~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~ 303 (480)
..|+...+ +.| +...+..+..+ |.+.|+ .++|.+++++. ...| +...+..+...+...|++++|...++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888774 244 46667777775 467676 48888888887 4455 5778888888899999999999999999
Q ss_pred HHcCCCCchhH
Q 038395 304 ISQNLANSGTY 314 (480)
Q Consensus 304 ~~~~~~~~~~~ 314 (480)
++..|++..-+
T Consensus 171 L~l~~~~~~r~ 181 (198)
T PRK10370 171 LDLNSPRVNRT 181 (198)
T ss_pred HhhCCCCccHH
Confidence 99888765443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00033 Score=73.26 Aligned_cols=232 Identities=11% Similarity=0.061 Sum_probs=120.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038395 40 SLVSLTTMLTCYAKQGEVAAARVLFDDMEE--KDV-VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA 116 (480)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 116 (480)
+...|..|+..|...+++++|.++.+...+ |+. ..|-.+...+.+.++.+++..+ .+. ..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l---------------~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI---------------DS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh---------------hh
Confidence 445677777777777777777777765443 322 2333333355555655554444 222 22
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHH
Q 038395 117 CGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDA 193 (480)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A 193 (480)
.....++.....+...+.. ...+...+-.|..+|-+.|+.++|..+++++.+ .|+.+.|.+...|+.. +.++|
T Consensus 93 ~~~~~~~~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccccchhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 2222233223333333332 223334555566666666666666666666554 3555666666666666 66666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038395 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDMK 272 (480)
Q Consensus 194 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 272 (480)
.+++.+.... +...+++..+.+++..+..- .|+ ...+-.+.. .+...++
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~---~~~d~d~f~~i~~------------ki~~~~~ 218 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY---NSDDFDFFLRIER------------KVLGHRE 218 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc---CcccchHHHHHHH------------HHHhhhc
Confidence 6666655432 33344555555555555521 222 111111111 1111112
Q ss_pred CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 038395 273 IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYA 322 (480)
Q Consensus 273 ~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 322 (480)
...-+.++-.+-..|...++++.+..+++.+++.+|.|..+..-++..|.
T Consensus 219 ~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 219 FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 22334455555666677777777777777777777777666666666665
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.001 Score=68.80 Aligned_cols=191 Identities=11% Similarity=0.039 Sum_probs=137.6
Q ss_pred HHHHHHHHHcCChHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHH
Q 038395 76 NVMIDGYAQHGLANEA-LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYS 154 (480)
Q Consensus 76 ~~li~~~~~~g~~~~A-~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 154 (480)
+.+=.+.+.-|..++| .++.++..+ ++...++......++.-.....+ ..+.++..+-.|.....
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~La~i~~ 97 (694)
T PRK15179 32 DLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR--RYPHTELFQVLVARALE 97 (694)
T ss_pred hHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH--hccccHHHHHHHHHHHH
Confidence 3333444555665555 334444332 33333333333333333333333 46677889999999999
Q ss_pred hCCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHH
Q 038395 155 KCGSLKDARLVFDRVND--K-DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS-DITFIGLLSACAHAGLVNEGRR 230 (480)
Q Consensus 155 ~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 230 (480)
..|.+++|..+++...+ | +...+..++..+.+.+++++|+..+++.... .|+ ......+..++...|+.++|..
T Consensus 98 ~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~~~~A~~ 175 (694)
T PRK15179 98 AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQSEQADA 175 (694)
T ss_pred HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcchHHHHH
Confidence 99999999999999875 4 5677888999999999999999999999885 455 4556667778899999999999
Q ss_pred HHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHH
Q 038395 231 FFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM--KIEPDSVLWGTLLG 285 (480)
Q Consensus 231 ~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~ 285 (480)
+|+++... .|+ ...+..+...+-..|+.++|...|++. ...|.+..|+.++.
T Consensus 176 ~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 176 CFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 99999952 344 778888899999999999999999988 33455566655543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.3e-06 Score=50.89 Aligned_cols=33 Identities=30% Similarity=0.506 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 038395 73 VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105 (480)
Q Consensus 73 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 105 (480)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00042 Score=65.87 Aligned_cols=136 Identities=18% Similarity=0.102 Sum_probs=79.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCc-hhHHHHHHHHHHhC
Q 038395 79 IDGYAQHGLANEALVLFRRMLAEKVEPN-EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN-VQVGTALINMYSKC 156 (480)
Q Consensus 79 i~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~y~~~ 156 (480)
.-.+...|.+++|+..++.+... .|| ..........+...++.++|.+.++.+... .|+ ..+.-.+.++|.+.
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhc
Confidence 33445566666666666666654 333 333334444566666666666666666642 333 45555666666666
Q ss_pred CCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 038395 157 GSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN 233 (480)
Q Consensus 157 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 233 (480)
|+..+|.++++.... .|...|..|..+|...|+..+|..-.-++ +...|++++|...+.
T Consensus 388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~ 449 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIFLM 449 (484)
T ss_pred CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHH
Confidence 776666666665543 25566666777777666666666555543 233455666666555
Q ss_pred Hhhh
Q 038395 234 TMKD 237 (480)
Q Consensus 234 ~m~~ 237 (480)
...+
T Consensus 450 ~A~~ 453 (484)
T COG4783 450 RASQ 453 (484)
T ss_pred HHHH
Confidence 5554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0068 Score=58.56 Aligned_cols=148 Identities=9% Similarity=0.143 Sum_probs=105.0
Q ss_pred hHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHH
Q 038395 190 GKDALQLFNEMCRIR-LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKL 267 (480)
Q Consensus 190 ~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 267 (480)
.+...+.++++...- ..| ..+|...++.-.+..-++.|+.+|.++.++ +..+ ++.++++++.-|+ .++.+-|.++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrI 423 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRI 423 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHH
Confidence 445555666655432 333 346777788888888889999999999876 4445 7888888888766 5678888888
Q ss_pred HHhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCC-CchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 268 VMDM-KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQ--NLA-NSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 268 ~~~m-~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
|+-- ..-+| +.--...+.-+...++-..+..+|++++.. .|+ ....|..++.-=+.-|+...+.++-+++...
T Consensus 424 FeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 424 FELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 8754 22344 344456667777778888899999998886 332 3357888888888889999888887777543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00028 Score=67.03 Aligned_cols=174 Identities=16% Similarity=0.137 Sum_probs=123.4
Q ss_pred HHHHHHHHHhcCC------CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038395 159 LKDARLVFDRVND------KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232 (480)
Q Consensus 159 ~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 232 (480)
+.++++.-+.++. ++...+...+.+.........+..++.+-.+ ..-...-|..-+ .....|..++|+..+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG~A~-~~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYGRAL-QTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHHHHH-HHHHhcccchHHHHH
Confidence 4445555555553 2444555555544433333333333332222 111233344444 345678999999999
Q ss_pred HHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 038395 233 NTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309 (480)
Q Consensus 233 ~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~ 309 (480)
+.+.+. .|+ +.......+.+.+.++.++|.+.++++ ...|+ ...+-++..++.+.|++.+|..+++.....+|+
T Consensus 330 ~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 330 QPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 998854 454 556667788999999999999999998 56676 677788889999999999999999999999999
Q ss_pred CchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038395 310 NSGTYVLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 310 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
++..|..|..+|...|+..++...+.++-
T Consensus 407 dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 407 DPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred CchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999999999999988888877664
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.7e-05 Score=72.17 Aligned_cols=123 Identities=15% Similarity=0.169 Sum_probs=97.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 038395 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACR 288 (480)
Q Consensus 211 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~ 288 (480)
....|+..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++. ...| +...+..-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445666677778888888888888753 344 4455777777788888888888776 3234 5666666677788
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038395 289 LHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
..++++.|+.+++++.+..|.+..+|..|+.+|...|++++|+..+..+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999998775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.4e-06 Score=50.13 Aligned_cols=33 Identities=36% Similarity=0.496 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038395 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP 207 (480)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 207 (480)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0017 Score=66.94 Aligned_cols=283 Identities=13% Similarity=0.116 Sum_probs=184.8
Q ss_pred CChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 038395 24 GDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103 (480)
Q Consensus 24 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 103 (480)
+-+++|..+|++.. -+..+.+.||. .-+.++.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+.
T Consensus 1062 ~LyEEAF~ifkkf~-~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika----- 1130 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFD-MNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA----- 1130 (1666)
T ss_pred hHHHHHHHHHHHhc-ccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc-----
Confidence 34455555555432 13333333333 245666676666666655 56889999999999999998887442
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC------------
Q 038395 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND------------ 171 (480)
Q Consensus 104 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~------------ 171 (480)
-|+..|..++.++.+.|.+++-..++....+. .-.|. +-+.|+-+|++.+++.+.+++...-..
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~--id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~ 1206 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPY--IDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFE 1206 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCcc--chHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhh
Confidence 36778999999999999999999988888776 55554 446788899999988887666532110
Q ss_pred -----------CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcC
Q 038395 172 -----------KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240 (480)
Q Consensus 172 -----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 240 (480)
.++.-|..|...++..|.+..|.+--++. .+..||..+-.+|...+.+.-|. |. ...
T Consensus 1207 ~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iC-GL~ 1274 (1666)
T KOG0985|consen 1207 EKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----IC-GLN 1274 (1666)
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hc-Cce
Confidence 14445666777777777777777665543 25568888888888776655443 32 112
Q ss_pred CcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHH
Q 038395 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLS 318 (480)
Q Consensus 241 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 318 (480)
+.....-..-|+..|-..|.+++...+++.. |++. ....|+-|.-.|.+-+ +++..+.++.....- ..--++
T Consensus 1275 iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsRv-----NipKvi 1348 (1666)
T KOG0985|consen 1275 IIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSRV-----NIPKVI 1348 (1666)
T ss_pred EEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhc-----chHHHH
Confidence 2233444667888999999999999998876 6543 4566777766666653 444444444333211 112367
Q ss_pred HHHHHcCChhHHHHHHHHHHh
Q 038395 319 NIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 319 ~~~~~~g~~~~a~~~~~~m~~ 339 (480)
+++-.+--|.+..-++..-.+
T Consensus 1349 RA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1349 RAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 777777788887777665443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0043 Score=54.61 Aligned_cols=115 Identities=12% Similarity=0.132 Sum_probs=64.0
Q ss_pred HccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHH----HcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCh
Q 038395 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLS----RAGQVEEAYKLVMDM--KIEPDSVLWGTLLGACRLHGNI 293 (480)
Q Consensus 220 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m--~~~p~~~~~~~li~a~~~~~~~ 293 (480)
.+..+++-|.+.++.|.. -.+..+.+.|..++. ..+.+.+|.-+|++| +..|+..+.+....++...|++
T Consensus 148 lk~~r~d~A~~~lk~mq~----ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQ----IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHc----cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCH
Confidence 344455555555555542 122333333333332 234566666666666 3456666666666666677777
Q ss_pred hHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHH-HHHHHHHH
Q 038395 294 ALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGV-ARVRTLMK 338 (480)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 338 (480)
++|+.+++.++..++.++.+...++-.-...|.-.++ .+.+.+++
T Consensus 224 eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 224 EEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 7777777777777766666666655555555555433 33444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00028 Score=61.76 Aligned_cols=154 Identities=14% Similarity=0.073 Sum_probs=126.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 038395 45 TTMLTCYAKQGEVAAARVLFDDMEE---KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121 (480)
Q Consensus 45 ~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~ 121 (480)
..+-..+...|+-+.+..+...... .|....+.++....++|++.+|+..|++.... -++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHcc
Confidence 6667777788888888888777543 35556777899999999999999999998875 4778899999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHH
Q 038395 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFN 198 (480)
Q Consensus 122 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 198 (480)
+++.|..-|.+..+. .+-+....|.|.-.|.-.|++++|..++..... .|...-..+.......|++++|.++-.
T Consensus 149 r~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 999999999999985 344566788888888889999999999987643 477778888888889999999998876
Q ss_pred HHH
Q 038395 199 EMC 201 (480)
Q Consensus 199 ~m~ 201 (480)
.-.
T Consensus 227 ~e~ 229 (257)
T COG5010 227 QEL 229 (257)
T ss_pred ccc
Confidence 543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.13 E-value=8.6e-05 Score=70.98 Aligned_cols=119 Identities=11% Similarity=0.080 Sum_probs=79.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHh
Q 038395 76 NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155 (480)
Q Consensus 76 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~ 155 (480)
.+|+..+...++++.|+++|+++.+.. |+. ...++..+...++-.+|.+++.+..+ ..+.+..........+.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHh
Confidence 345555666677777777777777653 443 23355566666666677777666665 345556666666667777
Q ss_pred CCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038395 156 CGSLKDARLVFDRVND--K-DVVVWNSMIVGYAMHGFGKDALQLFNEM 200 (480)
Q Consensus 156 ~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m 200 (480)
.++++.|+++.+++.+ | +..+|..|..+|.+.|+++.|+-.++.+
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 7777777777777664 3 4457777777777777777777777655
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.4e-05 Score=61.67 Aligned_cols=97 Identities=18% Similarity=0.239 Sum_probs=76.2
Q ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 038395 245 VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYA 322 (480)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 322 (480)
......+...+.+.|++++|.+.|+.. ...| +...|..+...+...|+++.|...++.+++.+|+++..+..+...|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344556667777888888888888776 3334 56777788888888888888888888888888888888888888888
Q ss_pred HcCChhHHHHHHHHHHhCC
Q 038395 323 AIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 323 ~~g~~~~a~~~~~~m~~~~ 341 (480)
..|++++|.+.++...+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 8888888888888776653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0018 Score=67.97 Aligned_cols=234 Identities=9% Similarity=0.089 Sum_probs=158.7
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCh-hHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 038395 8 KDLYVSTSLVDLYARGGDVLSAEKLFATMPQ--RSL-VSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQ 84 (480)
Q Consensus 8 ~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 84 (480)
.+...+-.|+..|...+++++|.++.+.-.+ |+. ..|-.+...+.+.++.++|..+ .++.....
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~ 95 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQ 95 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccc
Confidence 3566889999999999999999999986553 443 3344444467777776666555 33444444
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHH
Q 038395 85 HGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164 (480)
Q Consensus 85 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 164 (480)
..++.-...++..|... .-+...+..+..+|-+.|+.+++..+++++.+. . +.|+.+.|.+...|+.. ++++|.+
T Consensus 96 ~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~-D-~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 96 NLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKA-D-RDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred ccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHh-hHHHHHH
Confidence 45554444444555542 334557888899999999999999999999986 3 67888999999999999 9999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC
Q 038395 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT-FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP 243 (480)
Q Consensus 165 ~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 243 (480)
.+.+.. ..|...+++.++.++|.++... .|+... |..+++ .+....+..-
T Consensus 171 m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~----------------ki~~~~~~~~ 221 (906)
T PRK14720 171 YLKKAI-----------YRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIER----------------KVLGHREFTR 221 (906)
T ss_pred HHHHHH-----------HHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHHH----------------HHHhhhccch
Confidence 887753 3367777899999999998874 343332 222222 2222212222
Q ss_pred CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 038395 244 KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACR 288 (480)
Q Consensus 244 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~ 288 (480)
-+.++-.+...|-..++++++..+++.+ ...| |.....-++..|.
T Consensus 222 ~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 222 LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 2344555666677788888888888877 4444 4555566666655
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0014 Score=66.08 Aligned_cols=243 Identities=14% Similarity=0.124 Sum_probs=163.3
Q ss_pred CCCChhHHHHHHHH--HHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC---------CCCC
Q 038395 37 PQRSLVSLTTMLTC--YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE---------KVEP 105 (480)
Q Consensus 37 ~~~~~~~~~~li~~--~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~p 105 (480)
.+-|..|-.+++.. |..-|++|.|.+-.+-+. +...|..|.+.+.+..+.+-|.-.+-.|... .-.|
T Consensus 722 e~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 722 ENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred cccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 34477777777754 788899999988877765 4578999999999998888776665555321 1123
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC-CChHHHHHHHHHH
Q 038395 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND-KDVVVWNSMIVGY 184 (480)
Q Consensus 106 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~ 184 (480)
+ .+=.-+.-....+|.+++|+.+|++-++. ..|=..|...|.+++|.++-+.-.. .=..+|.....-+
T Consensus 800 ~-e~eakvAvLAieLgMlEeA~~lYr~ckR~----------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 800 E-EDEAKVAVLAIELGMLEEALILYRQCKRY----------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYL 868 (1416)
T ss_pred c-chhhHHHHHHHHHhhHHHHHHHHHHHHHH----------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHH
Confidence 2 22222223346789999999999998864 4555678889999999888654322 1123555555556
Q ss_pred HhcCChHHHHHHHHHH----------HHcC---------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCc
Q 038395 185 AMHGFGKDALQLFNEM----------CRIR---------LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV 245 (480)
Q Consensus 185 ~~~g~~~~A~~l~~~m----------~~~g---------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 245 (480)
-..++.+.|++.|++- .... -.-|...|.--....-..|+++.|+.+|...+.
T Consensus 869 ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------- 940 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-------- 940 (1416)
T ss_pred HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------
Confidence 6677788888777653 1111 012333344444445567888888888887763
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038395 246 EHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305 (480)
Q Consensus 246 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~ 305 (480)
|-+++...|-.|+.++|-++-++-| |......|.+-|-..|++.+|...|.++..
T Consensus 941 --~fs~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 941 --YFSMVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred --hhhheeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4566777777888888888877754 555556677888888888888877766554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0015 Score=57.27 Aligned_cols=250 Identities=14% Similarity=0.031 Sum_probs=156.3
Q ss_pred HHHhcCCHHHHHHHHhhcC-C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHH
Q 038395 50 CYAKQGEVAAARVLFDDME-E-KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGR 127 (480)
Q Consensus 50 ~~~~~g~~~~A~~~f~~~~-~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~ 127 (480)
-+.-.|.+..++..-+... . .++..---+-++|...|.+...+.- ... |-.|....+..+......-++.+.-.
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchhHHHH
Confidence 3444566666655544432 2 2333334455667777766544332 111 22333334433333344444444333
Q ss_pred -HHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038395 128 -WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK 206 (480)
Q Consensus 128 -~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 206 (480)
.+.+.+... ....+......-...|++.|++++|++.......-+....| +..+.+..+.+-|.+.+++|.+-
T Consensus 93 ~~l~E~~a~~-~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i--- 166 (299)
T KOG3081|consen 93 ASLYELVADS-TDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI--- 166 (299)
T ss_pred HHHHHHHHhh-ccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---
Confidence 344444443 44444444444556788999999999999884433333333 44556778899999999999873
Q ss_pred CCHHHHHHHHHHHH----ccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHH
Q 038395 207 PSDITFIGLLSACA----HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM--KIEPDSVLW 280 (480)
Q Consensus 207 p~~~t~~~ll~a~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~ 280 (480)
-+..|.+-|.+++. ..+.+..|.-+|++|.. ...|+..+.+-+.-+....|++++|..+++.. .-..++.+.
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 25667776766664 34678899999999985 35788888888888888999999999999888 333456676
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCc
Q 038395 281 GTLLGACRLHGN-IALGEKIAEYLISQNLANS 311 (480)
Q Consensus 281 ~~li~a~~~~~~-~~~a~~~~~~~~~~~~~~~ 311 (480)
..++..-...|. .+...+...++....|..+
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 666665555554 4556677777777777654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00037 Score=71.47 Aligned_cols=61 Identities=13% Similarity=-0.060 Sum_probs=50.9
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHH
Q 038395 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTL 336 (480)
Q Consensus 276 ~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 336 (480)
...+|..+...+....|++-|...|.....++|.+...|......-...|+.-++..+|..
T Consensus 849 ~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 849 CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred chhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 4566777767777888999999999999999999988888887777888888888888876
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0069 Score=62.66 Aligned_cols=250 Identities=13% Similarity=0.120 Sum_probs=157.8
Q ss_pred CChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 038395 24 GDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103 (480)
Q Consensus 24 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 103 (480)
+.++.|.+.-++..+| ..|..+..+-.+.|.+.+|++-|-+.. |...|.-+|....+.|.+++-.+.+.-.++..-
T Consensus 1089 ~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyikad--Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKAD--DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred hhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhcC--CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 3455555555544443 569999999999999999998886655 557788999999999999999998887777766
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC------------
Q 038395 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND------------ 171 (480)
Q Consensus 104 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~------------ 171 (480)
.|...+ .++-+|++.+++.+.+.+. ..||......+.+-+...|.++.|.-+|.....
T Consensus 1165 E~~id~--eLi~AyAkt~rl~elE~fi--------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~Lg 1234 (1666)
T KOG0985|consen 1165 EPYIDS--ELIFAYAKTNRLTELEEFI--------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLG 1234 (1666)
T ss_pred CccchH--HHHHHHHHhchHHHHHHHh--------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 666554 5777888888777655543 234444444444444445555555444443321
Q ss_pred ------------CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhc
Q 038395 172 ------------KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239 (480)
Q Consensus 172 ------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 239 (480)
.+..+|...-.+|...+.+.-| +|-..++-.-..-...++.-|...|-+++-..+++...
T Consensus 1235 eyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--- 1306 (1666)
T KOG0985|consen 1235 EYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--- 1306 (1666)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh---
Confidence 2566787777777766554322 33333344455667789999999999999999888765
Q ss_pred CCcC-CccHHHHHHHHHHHcCCHHHHHH---HH-HhCCCC------CCHhHHHHHHHHHHhcCChhHH
Q 038395 240 AIEP-KVEHYGCMVNLLSRAGQVEEAYK---LV-MDMKIE------PDSVLWGTLLGACRLHGNIALG 296 (480)
Q Consensus 240 ~~~p-~~~~~~~li~~~~~~g~~~~A~~---~~-~~m~~~------p~~~~~~~li~a~~~~~~~~~a 296 (480)
|++. ....|+-|.-.|++- ++++..+ +| .+..+. -....|+-+.-.|.+-..++.|
T Consensus 1307 GLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1307 GLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred chhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 5433 344566666667654 3344333 33 222211 1234566665555555544443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0042 Score=59.87 Aligned_cols=315 Identities=14% Similarity=0.089 Sum_probs=195.8
Q ss_pred HHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCH-HHHHHHHHHHHHcCChHHH
Q 038395 18 DLYARGGDVLSAEKLFATMP---QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE--KDV-VCWNVMIDGYAQHGLANEA 91 (480)
Q Consensus 18 ~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A 91 (480)
++....|+++.|...|.... .+|.+.|..-..+|.+.|++++|++=-.+-.+ |+. -.|+-...++.-.|++++|
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 45567899999999999765 35788899999999999999999886666554 554 3789999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcc---CChHHHHHHHHHHHHhCCCCC-----chhHHHHHHH----------HH
Q 038395 92 LVLFRRMLAEKVEPNEVTAVAVLSACGQI---GALESGRWIHSYIENSRNIKV-----NVQVGTALIN----------MY 153 (480)
Q Consensus 92 ~~~~~~m~~~g~~pd~~t~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~li~----------~y 153 (480)
+..|.+-++.. +-|...+..+..+.... ++.-..-.++..... .+. ....|..++. .|
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~---~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLAN---LPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhc---ChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999988752 33566777777776211 011111111211111 000 0111222222 12
Q ss_pred HhCCCHHHHHHHHHhcC----------------CC------------C----------hHHHHHHHHHHHhcCChHHHHH
Q 038395 154 SKCGSLKDARLVFDRVN----------------DK------------D----------VVVWNSMIVGYAMHGFGKDALQ 195 (480)
Q Consensus 154 ~~~g~~~~A~~~f~~m~----------------~~------------~----------~~~~~~li~~~~~~g~~~~A~~ 195 (480)
....++..|.-++.... .| | ..-.-.+.++..+..+++.|++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 22122233332222110 01 1 0124456677777888888998
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhh-------cCCcCCccHHHHHHHHHHHcCCHHHHHHHH
Q 038395 196 LFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE-------YAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268 (480)
Q Consensus 196 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 268 (480)
-+....+.. -+..-++....++...|...+....-....+. +.+ =...+..+..+|.+.++++.|...|
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~kl--Iak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKL--IAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHH--HHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 888887753 23333445555666666665554444333322 111 0111222444677778888888888
Q ss_pred HhC---CCCCCHhH-------------------------HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 038395 269 MDM---KIEPDSVL-------------------------WGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNI 320 (480)
Q Consensus 269 ~~m---~~~p~~~~-------------------------~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 320 (480)
++. -..|+..+ ...=...+.+.|++..|...+.++++.+|+++..|....-+
T Consensus 322 ~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac 401 (539)
T KOG0548|consen 322 QKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAAC 401 (539)
T ss_pred HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 765 11122111 11113456788999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHhC
Q 038395 321 YAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 321 ~~~~g~~~~a~~~~~~m~~~ 340 (480)
|.+.|.+..|++=-+...+.
T Consensus 402 ~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 402 YLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHhhHHHHHHHHHHHHhc
Confidence 99999999999876666554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=8.5e-05 Score=60.48 Aligned_cols=94 Identities=10% Similarity=-0.030 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHc
Q 038395 247 HYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAI 324 (480)
Q Consensus 247 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 324 (480)
..-.+...+...|++++|.++|+-. .+.| +..-|..|...|...|++++|...+..+..++|+++.++..+..+|...
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 3344555667899999999999988 4455 4677888999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhC
Q 038395 325 GNWDGVARVRTLMKEK 340 (480)
Q Consensus 325 g~~~~a~~~~~~m~~~ 340 (480)
|+.+.|.+-|+.....
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987653
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.01 Score=54.14 Aligned_cols=297 Identities=13% Similarity=0.053 Sum_probs=216.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHH---HHHHhcCCHHHHHHHHhhcCCCCHHHHHHH---HHHHH
Q 038395 10 LYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTML---TCYAKQGEVAAARVLFDDMEEKDVVCWNVM---IDGYA 83 (480)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~ 83 (480)
+.----|...+...|++.+|+.-|....+-|+..|.++- ..|...|+-..|+.-|++..+--...+.+- ...+.
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence 333334567777889999999999999887777777664 467888888888888888765322233332 34578
Q ss_pred HcCChHHHHHHHHHHHHCCCC------------CCH--HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHH
Q 038395 84 QHGLANEALVLFRRMLAEKVE------------PNE--VTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTAL 149 (480)
Q Consensus 84 ~~g~~~~A~~~~~~m~~~g~~------------pd~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 149 (480)
+.|.+++|..=|+..++.... +-. ......+..+...|+...+......+.+. .+-|...+..-
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wda~l~~~R 195 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWDASLRQAR 195 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--CcchhHHHHHH
Confidence 899999999999999875321 111 12344556677789999999999999973 56688899999
Q ss_pred HHHHHhCCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH----HHH-------
Q 038395 150 INMYSKCGSLKDARLVFDRVN---DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF----IGL------- 215 (480)
Q Consensus 150 i~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~----~~l------- 215 (480)
..+|...|++..|+.=+.... ..+....--+-..+...|+.+.++...++-.+ +.||.... ..|
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~l 273 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSL 273 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHH
Confidence 999999999999977666544 45677777778888899999999999888776 56776432 111
Q ss_pred --HHHHHccCCHHHHHHHHHHhhhhcCCcCC-----ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHH
Q 038395 216 --LSACAHAGLVNEGRRFFNTMKDEYAIEPK-----VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGTLLGA 286 (480)
Q Consensus 216 --l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~a 286 (480)
+......+.+.++.+-.+...+. .|. ...+..+-..|...|++.+|++.-.+. .+.|+ +.++.--..+
T Consensus 274 es~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 274 ESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEA 350 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 11233456666676666666532 344 223344556677789999999888777 66676 7888888889
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCchh
Q 038395 287 CRLHGNIALGEKIAEYLISQNLANSGT 313 (480)
Q Consensus 287 ~~~~~~~~~a~~~~~~~~~~~~~~~~~ 313 (480)
|.....++.|..-|+.+.+.++++..+
T Consensus 351 ~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 351 YLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 999999999999999999999987543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.95 E-value=9.8e-06 Score=46.90 Aligned_cols=31 Identities=35% Similarity=0.617 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 038395 73 VCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103 (480)
Q Consensus 73 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 103 (480)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888877663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.1e-05 Score=46.64 Aligned_cols=31 Identities=39% Similarity=0.633 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038395 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRL 205 (480)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 205 (480)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888877663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.016 Score=53.02 Aligned_cols=283 Identities=13% Similarity=0.085 Sum_probs=169.1
Q ss_pred hcCCHHHHHHHHhhcCC--CCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHH
Q 038395 53 KQGEVAAARVLFDDMEE--KDVVCWNV-MIDGYAQHGLANEALVLFRRMLAEKVEPNE-VTAVAVLSACGQIGALESGRW 128 (480)
Q Consensus 53 ~~g~~~~A~~~f~~~~~--~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~~~~~a~~ 128 (480)
..-.+.+|++++.+... |+-...|. +.-+|.+...++-+.+++.-.++. -||. ...+..+....+.=+-..+.+
T Consensus 163 mR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~ 240 (557)
T KOG3785|consen 163 MRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAED 240 (557)
T ss_pred HHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHH
Confidence 33457889999988775 44445554 345678888888888888777664 3443 333333322222111111111
Q ss_pred ----H----------HHHHHHhC-----CC------CC-----chhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHH
Q 038395 129 ----I----------HSYIENSR-----NI------KV-----NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWN 178 (480)
Q Consensus 129 ----~----------~~~~~~~~-----~~------~~-----~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~ 178 (480)
+ .+.+.++. +. -| =+..-..|+--|.+.+++.+|..+...+...+..-|-
T Consensus 241 E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~Eyi 320 (557)
T KOG3785|consen 241 EKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYI 320 (557)
T ss_pred HHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHH
Confidence 1 11111110 00 00 0122334555688899999999998887654443332
Q ss_pred HHHHHHHhcC-------ChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHH
Q 038395 179 SMIVGYAMHG-------FGKDALQLFNEMCRIRLKPSDIT-FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGC 250 (480)
Q Consensus 179 ~li~~~~~~g-------~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 250 (480)
.-.-.++..| +..-|.+.|+-.-+.+..-|.+. -.++.+++.-..++++...+++.++. +=...|...+ .
T Consensus 321 lKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N 398 (557)
T KOG3785|consen 321 LKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-N 398 (557)
T ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-H
Confidence 2222223333 34566666666655655544432 23344455556688999998888874 3333344444 4
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHH-HHHHhcCChhHHHHHHHHHHHcC-CCC-chhHHHHHHHHHHcC
Q 038395 251 MVNLLSRAGQVEEAYKLVMDM-KIE-PDSVLWGTLL-GACRLHGNIALGEKIAEYLISQN-LAN-SGTYVLLSNIYAAIG 325 (480)
Q Consensus 251 li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li-~a~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~g 325 (480)
+.++++..|.+.+|+++|-++ +.+ .|..+|.+++ +.|...+.++.|-.+ +++.+ |.+ ......+.+-|.+++
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~---~lk~~t~~e~fsLLqlIAn~CYk~~ 475 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM---MLKTNTPSERFSLLQLIANDCYKAN 475 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH---HHhcCCchhHHHHHHHHHHHHHHHH
Confidence 688999999999999999888 222 4667776655 566777888877554 44433 322 234456788899999
Q ss_pred ChhHHHHHHHHHHhCCC
Q 038395 326 NWDGVARVRTLMKEKGV 342 (480)
Q Consensus 326 ~~~~a~~~~~~m~~~~~ 342 (480)
.+--|.+.|+.+.....
T Consensus 476 eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 476 EFYYAAKAFDELEILDP 492 (557)
T ss_pred HHHHHHHhhhHHHccCC
Confidence 99999999998876554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.004 Score=54.39 Aligned_cols=163 Identities=16% Similarity=0.139 Sum_probs=109.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCC-----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038395 147 TALINMYSKCGSLKDARLVFDRVNDK-----DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221 (480)
Q Consensus 147 ~~li~~y~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 221 (480)
..++-+...+|+.+.|...++++..+ -+.-..+| -+-..|++++|+++++...+.. +.|.+++..=+-..-.
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 33444445566666666666655432 11112222 2345788888888888888775 4466777666656666
Q ss_pred cCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHh---cCChhHH
Q 038395 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGTLLGACRL---HGNIALG 296 (480)
Q Consensus 222 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~a~~~---~~~~~~a 296 (480)
.|..-+|.+-+....+ .+..|...|.-+.+.|...|++++|.-.++++ -++|. +..+..+...+-. ..+.+.+
T Consensus 133 ~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7777788888887775 45678888999999999999999999999888 34453 4444444444433 3467789
Q ss_pred HHHHHHHHHcCCCCchhH
Q 038395 297 EKIAEYLISQNLANSGTY 314 (480)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~ 314 (480)
.+++.+.+++.|.+...+
T Consensus 211 rkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 211 RKYYERALKLNPKNLRAL 228 (289)
T ss_pred HHHHHHHHHhChHhHHHH
Confidence 999999999998654443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0033 Score=64.85 Aligned_cols=173 Identities=16% Similarity=0.067 Sum_probs=121.2
Q ss_pred hHHHHHHHhhCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038395 26 VLSAEKLFATMPQRSL---VSLTTMLTCYAKQGEVAAARVLFDDMEEK---DVVCWNVMIDGYAQHGLANEALVLFRRML 99 (480)
Q Consensus 26 ~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 99 (480)
...|...|-+..+.|+ ..|..|...|....+...|.+.|+..-+- |..++......|++..+++.|..+.-..-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 4555555554444333 57888888888888889999999987763 56788999999999999999998833322
Q ss_pred HCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHH
Q 038395 100 AEKVEPN---EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVV 176 (480)
Q Consensus 100 ~~g~~pd---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~ 176 (480)
+. .|- ..-|....-.+...++...+..-++...+ --+.|...|..|+.+|..+|++..|.++|.+...-++.+
T Consensus 554 qk--a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 554 QK--APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred hh--chHHHHHhhhhhccccccCccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 21 111 11222333446677888888888888876 356688899999999999999999999998877644333
Q ss_pred HHH---HHHHHHhcCChHHHHHHHHHHHH
Q 038395 177 WNS---MIVGYAMHGFGKDALQLFNEMCR 202 (480)
Q Consensus 177 ~~~---li~~~~~~g~~~~A~~l~~~m~~ 202 (480)
|-. ....-+..|.+.+|+..+.....
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 222 22234567888888888777654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00027 Score=52.72 Aligned_cols=93 Identities=18% Similarity=0.188 Sum_probs=73.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcC
Q 038395 248 YGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIG 325 (480)
Q Consensus 248 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 325 (480)
+..+...+...|++++|...+++. ...|+ ...+..+...+...++++.|...++...+..|.+...+..+...+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777788888888888876 33443 4667777788888888999999999988888887778888888899999
Q ss_pred ChhHHHHHHHHHHhC
Q 038395 326 NWDGVARVRTLMKEK 340 (480)
Q Consensus 326 ~~~~a~~~~~~m~~~ 340 (480)
++++|...+....+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999998888777543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00059 Score=55.45 Aligned_cols=88 Identities=10% Similarity=-0.018 Sum_probs=37.5
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCC
Q 038395 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGF 189 (480)
Q Consensus 113 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~ 189 (480)
+...+...|++++|...++.+... .+.+...+..+...|.+.|++++|...|+.... .+...|..+...|...|+
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC
Confidence 333344444444444444444432 122334444444444444444444444443321 123334444444444455
Q ss_pred hHHHHHHHHHHHH
Q 038395 190 GKDALQLFNEMCR 202 (480)
Q Consensus 190 ~~~A~~l~~~m~~ 202 (480)
+++|+..|++..+
T Consensus 101 ~~~A~~~~~~al~ 113 (135)
T TIGR02552 101 PESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHHH
Confidence 5555554444444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.051 Score=55.86 Aligned_cols=67 Identities=18% Similarity=0.251 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCC
Q 038395 280 WGTLLGACRLHGNIA---LGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346 (480)
Q Consensus 280 ~~~li~a~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 346 (480)
-+.|+..+.+.++.. +|.-+++..+...|.|..+-..|+.+|+-.|-+..|.++++.|.-++++.+.
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 457778888888765 5666677777788888888889999999999999999999999877776553
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.037 Score=53.68 Aligned_cols=335 Identities=10% Similarity=0.082 Sum_probs=205.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCHHHHHHHHHH
Q 038395 7 DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEE--KDVVCWNVMIDG 81 (480)
Q Consensus 7 ~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~ 81 (480)
+-|+.+|+.||.-+... ..++++..++++.. | ....|..-|..-.+..+++..+.+|.+... -++..|..-|+-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~Y 95 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSY 95 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 45889999999988766 99999999999875 4 457899999999999999999999999775 478888888774
Q ss_pred HHHc-CChH----HHHHHHHHHH-HCCCCCCH-HHHHHHHH---HH------HccCChHHHHHHHHHHHHhCCCCCchhH
Q 038395 82 YAQH-GLAN----EALVLFRRML-AEKVEPNE-VTAVAVLS---AC------GQIGALESGRWIHSYIENSRNIKVNVQV 145 (480)
Q Consensus 82 ~~~~-g~~~----~A~~~~~~m~-~~g~~pd~-~t~~~ll~---~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 145 (480)
--+. |... ...+.|+-.+ +.|+.+-. ..|+.-+. .. ....+++..+.+++.+... .+..=...
T Consensus 96 VR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t-Pm~nlEkL 174 (656)
T KOG1914|consen 96 VRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT-PMHNLEKL 174 (656)
T ss_pred HHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC-ccccHHHH
Confidence 4332 3322 2334444433 34555432 23443333 22 2233566678888888754 22221112
Q ss_pred HH------HHHHH-------HHhCCCHHHHHHHHHhcCC---------C------------ChHHHHHHHHHHH------
Q 038395 146 GT------ALINM-------YSKCGSLKDARLVFDRVND---------K------------DVVVWNSMIVGYA------ 185 (480)
Q Consensus 146 ~~------~li~~-------y~~~g~~~~A~~~f~~m~~---------~------------~~~~~~~li~~~~------ 185 (480)
|+ .=|+- --+...+..|++++++... + -+..|-.+|.-=-
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 21 11111 1123346667776665431 0 0112322222110
Q ss_pred ------------------------------------hcCC--------------hHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038395 186 ------------------------------------MHGF--------------GKDALQLFNEMCRIRLKPSDITFIGL 215 (480)
Q Consensus 186 ------------------------------------~~g~--------------~~~A~~l~~~m~~~g~~p~~~t~~~l 215 (480)
..++ .+++..+++.....-..-+..+|..+
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 22333333333221111122222222
Q ss_pred HHHHH---ccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC---CCCC-CHhHHHHHHHHHH
Q 038395 216 LSACA---HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM---KIEP-DSVLWGTLLGACR 288 (480)
Q Consensus 216 l~a~~---~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p-~~~~~~~li~a~~ 288 (480)
...-- .....+....+++++.....+.|+. +|.+++..-.|..-+..|..+|.+. +..+ ++.+.++++.-+
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~- 412 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY- 412 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH-
Confidence 21110 1112445556666666544555554 5778888888999999999999998 3344 677777777655
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccC
Q 038395 289 LHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345 (480)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 345 (480)
..+|.+.|.++|+.-++.-++.+..-..-+.-+...|+-..+..+|++...+++.++
T Consensus 413 cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 413 CSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred hcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 457889999999999998888876666778888899999999999999988866543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00063 Score=53.72 Aligned_cols=101 Identities=13% Similarity=0.064 Sum_probs=51.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHH
Q 038395 213 IGLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD----SVLWGTLLGA 286 (480)
Q Consensus 213 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~a 286 (480)
..+...+...|++++|...|..+.....-.| ....+..+...+.+.|++++|.+.++.+ ...|+ ..++..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344444555555555555555543211000 0123344555555556666665555554 21222 3345555556
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCchh
Q 038395 287 CRLHGNIALGEKIAEYLISQNLANSGT 313 (480)
Q Consensus 287 ~~~~~~~~~a~~~~~~~~~~~~~~~~~ 313 (480)
+...|+.+.|...++++++..|++..+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 666666666666666666666665433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.034 Score=52.07 Aligned_cols=111 Identities=12% Similarity=0.187 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh
Q 038395 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRL 289 (480)
Q Consensus 210 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~ 289 (480)
.+.+..+.-|...|+...|.++-.. +.+ |+...|-..+.+|+..++|++-.++... +..+.-|..++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~----Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKE----FKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHH----cCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 3455566677778888887776444 443 8888899999999999999998887654 3355788999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 038395 290 HGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337 (480)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 337 (480)
.|+..+|..+..++ .+..-+.+|.++|+|.+|.+.-.+.
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999988887762 2356678899999999998765443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00094 Score=55.06 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=39.8
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCCH----hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCh
Q 038395 253 NLLSRAGQVEEAYKLVMDM-KIEPDS----VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW 327 (480)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 327 (480)
..+...|++++|...|+.. ...|+. .....|...+...|++++|+..++... ..+..+..+..+.++|.+.|++
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~ 134 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP-DEAFKALAAELLGDIYLAQGDY 134 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHCCCH
Confidence 4444555555555555554 111221 122334445555555555555554321 1112233445566666666666
Q ss_pred hHHHHHHHH
Q 038395 328 DGVARVRTL 336 (480)
Q Consensus 328 ~~a~~~~~~ 336 (480)
++|...|+.
T Consensus 135 ~~A~~~y~~ 143 (145)
T PF09976_consen 135 DEARAAYQK 143 (145)
T ss_pred HHHHHHHHH
Confidence 666666553
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.021 Score=50.07 Aligned_cols=185 Identities=15% Similarity=0.144 Sum_probs=136.2
Q ss_pred cCChHHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCH
Q 038395 85 HGLANEALVLFRRMLA---EK-VEPNEV-TAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159 (480)
Q Consensus 85 ~g~~~~A~~~~~~m~~---~g-~~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 159 (480)
..++++.++++.++.. .| ..|+.. .|-.++-+....++.+.|...++.+... ++-+..+.-.-.-.+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhch
Confidence 3567778888877754 24 556665 4556666777889999999999998874 455555544444446667999
Q ss_pred HHHHHHHHhcCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 038395 160 KDARLVFDRVNDK---DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 160 ~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 236 (480)
++|.++++.+.+. |.+++---+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999998864 5566766677777788888999988888776 67799999999999999999999999999988
Q ss_pred hhcCCcCC-ccHHHHHHHHHHHcC---CHHHHHHHHHhC-CCCC
Q 038395 237 DEYAIEPK-VEHYGCMVNLLSRAG---QVEEAYKLVMDM-KIEP 275 (480)
Q Consensus 237 ~~~~~~p~-~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~p 275 (480)
- +.|. +..+..+.+.+--.| +++-|.++|.+. .+.|
T Consensus 182 l---~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 182 L---IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred H---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 3 3454 445566666654443 566778888776 5555
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=5.4e-05 Score=55.84 Aligned_cols=78 Identities=15% Similarity=0.240 Sum_probs=50.0
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHH
Q 038395 258 AGQVEEAYKLVMDM-KIEP---DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARV 333 (480)
Q Consensus 258 ~g~~~~A~~~~~~m-~~~p---~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 333 (480)
.|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45666777766666 1122 344555567777777777777777777 555555555556667777788888888777
Q ss_pred HHH
Q 038395 334 RTL 336 (480)
Q Consensus 334 ~~~ 336 (480)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0037 Score=51.50 Aligned_cols=122 Identities=11% Similarity=0.107 Sum_probs=54.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCc--hhHHHHH
Q 038395 75 WNVMIDGYAQHGLANEALVLFRRMLAEKVEPN---EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN--VQVGTAL 149 (480)
Q Consensus 75 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l 149 (480)
|..++..+ ..++...+.+.++.+.... +.+ ......+...+...|++++|...++.+... .-.++ ......|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 33333333 2555555555555555531 111 112222333445555555555555555543 21111 1122334
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCC--ChHHHHHHHHHHHhcCChHHHHHHHHH
Q 038395 150 INMYSKCGSLKDARLVFDRVNDK--DVVVWNSMIVGYAMHGFGKDALQLFNE 199 (480)
Q Consensus 150 i~~y~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~ 199 (480)
...+...|++++|+..++....+ ....+......|.+.|+.++|...|++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44555555555555555544332 223344444555555555555555543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00074 Score=53.30 Aligned_cols=96 Identities=16% Similarity=0.084 Sum_probs=80.7
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---chhHHHH
Q 038395 246 EHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN---SGTYVLL 317 (480)
Q Consensus 246 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l 317 (480)
.++-.+...+.+.|++++|.+.|+.+ ...|+ ...+..+..++...|+++.|...++.+....|.+ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34566778889999999999999988 33343 3466778899999999999999999999988764 4578889
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCC
Q 038395 318 SNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 318 ~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
..++.+.|++++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998774
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.095 Score=54.02 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=29.2
Q ss_pred HHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 218 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
.....|..++|..++..=..+.-..-+...-+--++.+...+++.+..++-.++
T Consensus 199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 345567777777777332212111222333345566777777777766665555
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0015 Score=62.65 Aligned_cols=97 Identities=14% Similarity=0.052 Sum_probs=59.1
Q ss_pred HHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCh
Q 038395 217 SACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNI 293 (480)
Q Consensus 217 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~ 293 (480)
......|++++|...|+.+.+. .| +...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 3445566777777777666632 33 3445556666666667777766666665 3344 355566666666666677
Q ss_pred hHHHHHHHHHHHcCCCCchhHHH
Q 038395 294 ALGEKIAEYLISQNLANSGTYVL 316 (480)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~~~~ 316 (480)
+.|...++++++++|.++.....
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHH
Confidence 77777777766666666544433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0003 Score=49.57 Aligned_cols=64 Identities=16% Similarity=0.166 Sum_probs=58.1
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcC-ChhHHHHHHHHHHh
Q 038395 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIG-NWDGVARVRTLMKE 339 (480)
Q Consensus 276 ~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 339 (480)
++.+|..+...+...|++++|+..|+++++.+|.++.+|..+..+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999 79999999987765
|
... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0043 Score=57.33 Aligned_cols=128 Identities=13% Similarity=0.087 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 038395 73 VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA-CGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151 (480)
Q Consensus 73 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 151 (480)
.+|..++...-+.+..+.|.++|.+.++.+ ..+...|...... +...++.+.|..+|+...+. ++.+...+...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467788888888888888888888887542 2234444443333 33356677788888888874 6777788888888
Q ss_pred HHHhCCCHHHHHHHHHhcCCC------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038395 152 MYSKCGSLKDARLVFDRVNDK------DVVVWNSMIVGYAMHGFGKDALQLFNEMCRI 203 (480)
Q Consensus 152 ~y~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 203 (480)
.+.+.|+.+.|+.+|++.... -...|...+..=.+.|+.+.+.++.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888887652 2357888888888888888888888887763
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.017 Score=50.74 Aligned_cols=201 Identities=13% Similarity=0.039 Sum_probs=131.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCC---CCCh---------------------------------hHHHHHHHHHHhc
Q 038395 11 YVSTSLVDLYARGGDVLSAEKLFATMP---QRSL---------------------------------VSLTTMLTCYAKQ 54 (480)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~---------------------------------~~~~~li~~~~~~ 54 (480)
..|+.-+.++.+....++|..-++... .||. .-|+.|+..+.-.
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~ 149 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLK 149 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 356666777777777777765544332 2221 1355555555444
Q ss_pred CCHHHHHHHHhhcCCC--CH--------HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChH
Q 038395 55 GEVAAARVLFDDMEEK--DV--------VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124 (480)
Q Consensus 55 g~~~~A~~~f~~~~~~--~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~ 124 (480)
.-+++-+..|+.-..| .+ ...+.++..+.-.|.+.-.+.++.+.++...+-++...+.+.+...+.|+.+
T Consensus 150 ~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k 229 (366)
T KOG2796|consen 150 TVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIK 229 (366)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHH
Confidence 4445555555443322 22 2446677777778888888889999888765667888888888888999999
Q ss_pred HHHHHHHHHHHhCCCCCchh-----HHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHH
Q 038395 125 SGRWIHSYIENSRNIKVNVQ-----VGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQL 196 (480)
Q Consensus 125 ~a~~~~~~~~~~~~~~~~~~-----~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l 196 (480)
.|..+++...+. .-..|.. +.-.....|.-.+++..|...|++++. +|.+.-|.-.-+..-.|+...|++.
T Consensus 230 ~a~~yf~~vek~-~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~ 308 (366)
T KOG2796|consen 230 TAEKYFQDVEKV-TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQ 308 (366)
T ss_pred HHHHHHHHHHHH-HhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHH
Confidence 999999977765 3333333 333334456667888888888888775 3555666555555557888899999
Q ss_pred HHHHHHcCCCCCHHHHHH
Q 038395 197 FNEMCRIRLKPSDITFIG 214 (480)
Q Consensus 197 ~~~m~~~g~~p~~~t~~~ 214 (480)
++.|.+. .|...+-++
T Consensus 309 ~e~~~~~--~P~~~l~es 324 (366)
T KOG2796|consen 309 LEAMVQQ--DPRHYLHES 324 (366)
T ss_pred HHHHhcc--CCccchhhh
Confidence 9988874 444444443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0017 Score=55.26 Aligned_cols=80 Identities=16% Similarity=0.066 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 038395 247 HYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIY 321 (480)
Q Consensus 247 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 321 (480)
.+..+...|...|++++|...|++. ...|+ ...|..+...+...|+++.|...++++++..|.+...+..+..+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4555556666667777777766665 22222 356777777788888888888888888888887777777777777
Q ss_pred HHcCC
Q 038395 322 AAIGN 326 (480)
Q Consensus 322 ~~~g~ 326 (480)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 77665
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0056 Score=56.58 Aligned_cols=133 Identities=11% Similarity=0.114 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHH
Q 038395 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIR-LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253 (480)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 253 (480)
.+|-.++...-+.+..+.|..+|.+..+.+ ...+.....+++. +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 467788888888888888889998887543 2333333344443 334577777999999998754 456777888899
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038395 254 LLSRAGQVEEAYKLVMDM-KIEPD----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310 (480)
Q Consensus 254 ~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~ 310 (480)
.+.+.|+.+.|..+|++. ..-|. ...|...+.--.+.|+.+....+.+++.+.-|.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999987 22333 3589999999999999999999999999987764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00043 Score=48.09 Aligned_cols=58 Identities=21% Similarity=0.162 Sum_probs=42.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 283 li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
+...+...|++++|...++++++..|.++..+..+..++...|++++|...+++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456667777778888888877777777777777777777888888887777777543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.018 Score=53.45 Aligned_cols=124 Identities=13% Similarity=0.151 Sum_probs=67.6
Q ss_pred HHHHHHhC-CCHHHHHHHHHhcCC-----C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----CCHH-HH
Q 038395 149 LINMYSKC-GSLKDARLVFDRVND-----K----DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK-----PSDI-TF 212 (480)
Q Consensus 149 li~~y~~~-g~~~~A~~~f~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~-t~ 212 (480)
+...|-.. |+++.|.+.|++..+ . -...+..+...+.+.|++++|+++|++....-.. ++.. .|
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 33345444 566666666555432 1 1234555677788888888888888887654322 1221 22
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhh-cCCcCC--ccHHHHHHHHHHH--cCCHHHHHHHHHhCC
Q 038395 213 IGLLSACAHAGLVNEGRRFFNTMKDE-YAIEPK--VEHYGCMVNLLSR--AGQVEEAYKLVMDMK 272 (480)
Q Consensus 213 ~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~m~ 272 (480)
...+-++...|+...|...++..... .++..+ ......|+++|-. ...+++|..-|+.+.
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 33333556678888888888887632 122222 2334555666543 345677777777763
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0018 Score=49.07 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCC--------HHHHHHHHHHhhhhcCCcCCcc
Q 038395 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRL-KPSDITFIGLLSACAHAGL--------VNEGRRFFNTMKDEYAIEPKVE 246 (480)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g~--------~~~a~~~~~~m~~~~~~~p~~~ 246 (480)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+... +-+.+.+|+.|... +++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 334456666667999999999999999999 8999999999998776532 34556677777744 7888888
Q ss_pred HHHHHHHHHHH
Q 038395 247 HYGCMVNLLSR 257 (480)
Q Consensus 247 ~~~~li~~~~~ 257 (480)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 88888776654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.002 Score=47.74 Aligned_cols=58 Identities=17% Similarity=0.055 Sum_probs=25.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 038395 76 NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134 (480)
Q Consensus 76 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 134 (480)
..+...+...|++++|+..|++..+.. +.+...+..+...+...++++.|.+.+....
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555544431 1122333334444444444444444444444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0019 Score=54.74 Aligned_cols=93 Identities=12% Similarity=-0.048 Sum_probs=71.8
Q ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHH
Q 038395 245 VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN 319 (480)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 319 (480)
...+..+...+...|++++|...|++. .+.|+ ..+|..+...+...|++++|...++++++..|....++..+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566677777788888888888877 33332 3578888889999999999999999999998888777888888
Q ss_pred HHH-------HcCChhHHHHHHHHH
Q 038395 320 IYA-------AIGNWDGVARVRTLM 337 (480)
Q Consensus 320 ~~~-------~~g~~~~a~~~~~~m 337 (480)
+|. ..|++++|...+++-
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 887 778888776666544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0053 Score=48.25 Aligned_cols=106 Identities=17% Similarity=0.126 Sum_probs=70.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC---chhHHHHHHHH
Q 038395 78 MIDGYAQHGLANEALVLFRRMLAEKVEPN--EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV---NVQVGTALINM 152 (480)
Q Consensus 78 li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~ 152 (480)
+..++-..|+.++|+.+|++....|...+ ...+..+.+.+...|++++|..+++..... .+. +..+...+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHH
Confidence 45667788999999999999988876654 335666777788888999998888888764 222 23333334446
Q ss_pred HHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 038395 153 YSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA 185 (480)
Q Consensus 153 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~ 185 (480)
+...|+.++|.+.+-....++...|.--|..|+
T Consensus 85 L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788887777776554444444444444443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0037 Score=47.48 Aligned_cols=81 Identities=14% Similarity=0.016 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------ChHHHHHHHHHHHHhCCCCCchh
Q 038395 74 CWNVMIDGYAQHGLANEALVLFRRMLAEKV-EPNEVTAVAVLSACGQIG--------ALESGRWIHSYIENSRNIKVNVQ 144 (480)
Q Consensus 74 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 144 (480)
+-...|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. .+-..+.+++.+... +++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 344566667777999999999999999999 899999999999877653 244567888999888 8999999
Q ss_pred HHHHHHHHHHh
Q 038395 145 VGTALINMYSK 155 (480)
Q Consensus 145 ~~~~li~~y~~ 155 (480)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99998887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.025 Score=52.45 Aligned_cols=168 Identities=10% Similarity=0.086 Sum_probs=89.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCC---C-C-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHH
Q 038395 75 WNVMIDGYAQHGLANEALVLFRRMLAEKVE---P-N-EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTAL 149 (480)
Q Consensus 75 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p-d-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 149 (480)
|+.....|-..|++++|.+.|.+....-.+ + + ...|......+. ..+++.|... +...
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~----------------~~~A 100 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIEC----------------YEKA 100 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHH----------------HHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHH----------------HHHH
Confidence 444556677778888888877766432110 0 0 011222222222 2244444333 3344
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhc-CChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHcc
Q 038395 150 INMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH-GFGKDALQLFNEMCRI----RLKPS--DITFIGLLSACAHA 222 (480)
Q Consensus 150 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~----g~~p~--~~t~~~ll~a~~~~ 222 (480)
+..|.+.|++..|-+++.. +...|... |++++|++.|++..+. | .+. ...+..+...+.+.
T Consensus 101 ~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHh
Confidence 4567788888777666554 45566666 7888888888876542 2 111 23455666777888
Q ss_pred CCHHHHHHHHHHhhhhcCCcC----Ccc-HHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 223 GLVNEGRRFFNTMKDEYAIEP----KVE-HYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 223 g~~~~a~~~~~~m~~~~~~~p----~~~-~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
|++++|.++|+++....--.+ +.. .+-..+-.+...|++..|.+.+++.
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888888887764311111 111 2222333455567888888877775
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.011 Score=59.36 Aligned_cols=63 Identities=16% Similarity=0.146 Sum_probs=38.3
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 277 ~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
+..|..+.-.....|++++|...++++++++| +..+|..+...|...|+.++|.+.+++....
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44555554444455666666666666666666 3456666666666666666666666665544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0038 Score=59.86 Aligned_cols=102 Identities=11% Similarity=0.039 Sum_probs=80.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHc
Q 038395 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRA 258 (480)
Q Consensus 180 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~ 258 (480)
....+...|++++|+++|++..+... -+...|..+..++...|++++|...++.+.. +.| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 34566778999999999999988542 3566788888899999999999999999984 345 467788889999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHhHHHHHHH
Q 038395 259 GQVEEAYKLVMDM-KIEPDSVLWGTLLG 285 (480)
Q Consensus 259 g~~~~A~~~~~~m-~~~p~~~~~~~li~ 285 (480)
|++++|...|++. .+.|+.......+.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999987 55666444444443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0073 Score=51.40 Aligned_cols=91 Identities=12% Similarity=0.018 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHH
Q 038395 71 DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN--EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148 (480)
Q Consensus 71 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 148 (480)
....|..+...+...|++++|+..|++.......++ ...+..+...+.+.|+++.|...+....+. .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 344566777777777888888888777766432222 345666677777777888887777777753 2334555666
Q ss_pred HHHHHHhCCCHHHHH
Q 038395 149 LINMYSKCGSLKDAR 163 (480)
Q Consensus 149 li~~y~~~g~~~~A~ 163 (480)
+..+|...|+...+.
T Consensus 112 lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 112 IAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHcCChHhHh
Confidence 666676666655444
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0012 Score=45.86 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=49.5
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 038395 251 MVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311 (480)
Q Consensus 251 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~ 311 (480)
+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 455678889999999999888 5556 477888888999999999999999999999998764
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0019 Score=55.31 Aligned_cols=97 Identities=13% Similarity=0.210 Sum_probs=64.8
Q ss_pred HHHHHhc--CCCChHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-------------
Q 038395 163 RLVFDRV--NDKDVVVWNSMIVGYAM-----HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA------------- 222 (480)
Q Consensus 163 ~~~f~~m--~~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 222 (480)
...|+.. ..+|..+|..+|..|.+ .|+.+=....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 34667777777777764 366777777788888888888888888888766542
Q ss_pred ---CCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCC
Q 038395 223 ---GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260 (480)
Q Consensus 223 ---g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 260 (480)
.+-+-|.+++++|. .+|+-||.+++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccH
Confidence 23355666666666 34666666666666666665544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.14 Score=47.99 Aligned_cols=104 Identities=18% Similarity=0.204 Sum_probs=57.8
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 038395 150 INMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR 229 (480)
Q Consensus 150 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 229 (480)
+.-+...|+...|.++-.+..-||..-|-..|.+|+..+++++-.++... +-+++.|..++.+|...|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHH
Confidence 44445556666666666666666666666666666666666655443221 112355666666666666666666
Q ss_pred HHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHh
Q 038395 230 RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMD 270 (480)
Q Consensus 230 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 270 (480)
.+...+. +..-+.+|.++|++.+|.+.--+
T Consensus 258 ~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 258 KYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 5554421 13445566666666666554433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0035 Score=60.47 Aligned_cols=120 Identities=10% Similarity=0.053 Sum_probs=86.2
Q ss_pred CCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 038395 138 NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK------DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211 (480)
Q Consensus 138 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 211 (480)
+.+.+......+++......+++.+..++.+.... -..+..++|..|...|..++++++++.=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44555666666777777777777788777766532 123445888888888888888888888888888888888
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHc
Q 038395 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRA 258 (480)
Q Consensus 212 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 258 (480)
|+.|+..+.+.|++..|.++...|..+ ....+..++..-+.++.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 888888888888888888888877754 4445555655555554444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.014 Score=56.50 Aligned_cols=129 Identities=16% Similarity=0.148 Sum_probs=101.8
Q ss_pred HHHHHHH---cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhc-CCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 196 LFNEMCR---IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY-AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 196 l~~~m~~---~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
++..|.+ .+.+.+......+++.+....+++++..++...+... ....-..+..++|..|.+.|..++++++++.=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 4454433 3456678888899999999999999999988887531 12222445569999999999999999999764
Q ss_pred ---CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCchhHHHHHHHHHHc
Q 038395 272 ---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN-LANSGTYVLLSNIYAAI 324 (480)
Q Consensus 272 ---~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 324 (480)
|+-||..+++.|+..+.+.|++..|.+++..|...+ .+++.++..-+.+|.+.
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 899999999999999999999999999988877754 56777777666666665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.025 Score=46.32 Aligned_cols=105 Identities=12% Similarity=0.018 Sum_probs=79.8
Q ss_pred HHHhhCC-CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 038395 31 KLFATMP-QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106 (480)
Q Consensus 31 ~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 106 (480)
..+..+. +.+....-++...+...|++++|.++|+-+.. | +..-|-.|..++-..|++++|+..|....... +-|
T Consensus 24 ~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~dd 102 (157)
T PRK15363 24 RMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDA 102 (157)
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCC
Confidence 3344555 44445555566667788999999999888653 3 56678888888888899999999998888764 346
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 038395 107 EVTAVAVLSACGQIGALESGRWIHSYIENS 136 (480)
Q Consensus 107 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 136 (480)
+..+-.+..++...|+.+.|++.|+..+..
T Consensus 103 p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 103 PQAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777888888888889999888888888765
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00058 Score=47.86 Aligned_cols=53 Identities=17% Similarity=0.266 Sum_probs=40.7
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 288 RLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
...|++++|...++++.+..|++...+..++.+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35677888888888888888888878888888888888888888888766544
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.011 Score=50.01 Aligned_cols=80 Identities=9% Similarity=-0.082 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHH
Q 038395 73 VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP--NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI 150 (480)
Q Consensus 73 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 150 (480)
..|..+...+...|++++|+..|++.......| ...++..+...+...|+.++|...+....+. .+.....+..+.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la 113 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHH
Confidence 355666666666666666666666665542222 1235555566666666666666666666543 222233344444
Q ss_pred HHHH
Q 038395 151 NMYS 154 (480)
Q Consensus 151 ~~y~ 154 (480)
..|.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0015 Score=58.41 Aligned_cols=97 Identities=18% Similarity=0.121 Sum_probs=80.3
Q ss_pred HHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCChh
Q 038395 218 ACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGTLLGACRLHGNIA 294 (480)
Q Consensus 218 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~a~~~~~~~~ 294 (480)
-..+.+++++|+..|...+ .+.|+ ...|..-..+|.+.|.++.|.+-.+.. .+.|. ..+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 3667899999999999998 44655 666677788999999999998877665 66776 678999999999999999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHH
Q 038395 295 LGEKIAEYLISQNLANSGTYVLL 317 (480)
Q Consensus 295 ~a~~~~~~~~~~~~~~~~~~~~l 317 (480)
+|.+.|++.++++|++......|
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHH
Confidence 99999999999999997443444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0041 Score=55.79 Aligned_cols=97 Identities=14% Similarity=0.221 Sum_probs=75.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCC
Q 038395 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQ 260 (480)
Q Consensus 182 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~ 260 (480)
+-+.+.+++.+|+..|.+.++.. +-|.+-|..=..+|++.|..+.|++-.+... .+.|. ...|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCc
Confidence 34667889999999999998852 2356667777888999999999988777666 34565 6788889999999999
Q ss_pred HHHHHHHHHhC-CCCCCHhHHHH
Q 038395 261 VEEAYKLVMDM-KIEPDSVLWGT 282 (480)
Q Consensus 261 ~~~A~~~~~~m-~~~p~~~~~~~ 282 (480)
+++|.+.|++. .+.|+-.+|..
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKS 187 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHH
Confidence 99999998887 77887666544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.065 Score=48.28 Aligned_cols=55 Identities=11% Similarity=0.007 Sum_probs=29.3
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--CCH-H---HHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038395 47 MLTCYAKQGEVAAARVLFDDMEE--KDV-V---CWNVMIDGYAQHGLANEALVLFRRMLAE 101 (480)
Q Consensus 47 li~~~~~~g~~~~A~~~f~~~~~--~~~-~---~~~~li~~~~~~g~~~~A~~~~~~m~~~ 101 (480)
....+.+.|++++|.+.|+.+.. |+. . ..-.++.+|.+.+++++|...|++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34444556666666666666553 221 1 1123445556666666666666666554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.038 Score=54.69 Aligned_cols=180 Identities=12% Similarity=0.096 Sum_probs=109.0
Q ss_pred HHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 038395 75 WNVMIDGYAQHGL--ANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINM 152 (480)
Q Consensus 75 ~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 152 (480)
++.-=.+|.+-.+ +-+.+.-+++|++.|-.|+.... ...|+-.|.+.+|-++|.+- |.. |-.+.+
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~----G~e------nRAlEm 667 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRS----GHE------NRALEM 667 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHc----Cch------hhHHHH
Confidence 4444455555443 34455557788888988987654 34466778888888888654 433 445667
Q ss_pred HHhCCCHHHHHHHHHhcCC--------------CChHHHHHHHHHHHhcCChHHHHHHHHH------HHHcCCCC---CH
Q 038395 153 YSKCGSLKDARLVFDRVND--------------KDVVVWNSMIVGYAMHGFGKDALQLFNE------MCRIRLKP---SD 209 (480)
Q Consensus 153 y~~~g~~~~A~~~f~~m~~--------------~~~~~~~~li~~~~~~g~~~~A~~l~~~------m~~~g~~p---~~ 209 (480)
|.....++.|.++...-.. +|+.--.+-...+...|+.++|..+.-+ +.+-+-+. +.
T Consensus 668 yTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~er 747 (1081)
T KOG1538|consen 668 YTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAER 747 (1081)
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhh
Confidence 7777777777776654321 1111112334455567777777765422 12222222 33
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCH
Q 038395 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK-IEPDS 277 (480)
Q Consensus 210 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~ 277 (480)
.+...+..-+-+...+..|-++|..|-.. ..++++....+++++|..+-++.| ..||+
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCccccccc
Confidence 44555555555666777788888877632 457788888899999998888884 34443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0088 Score=49.72 Aligned_cols=130 Identities=14% Similarity=0.079 Sum_probs=75.4
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCC-cCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHhH
Q 038395 205 LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI-EPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP---DSVL 279 (480)
Q Consensus 205 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~ 279 (480)
..|+..--..|..+....|+..+|...|++... |+ .-|....-.+.++....+++.+|...++++ ...| .+.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 455555556666777777777777777777663 33 344555556666666667777777777666 1111 1223
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 038395 280 WGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337 (480)
Q Consensus 280 ~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 337 (480)
--.+...+...|.+..|+..|+.++..-|... .-..-...+.++|+.+++..-+..+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~-ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGPQ-ARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH-HHHHHHHHHHHhcchhHHHHHHHHH
Confidence 33455666677777777777777776555421 2222334556666666655544443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0012 Score=48.55 Aligned_cols=80 Identities=16% Similarity=0.279 Sum_probs=47.4
Q ss_pred cCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHH
Q 038395 187 HGFGKDALQLFNEMCRIRL-KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEA 264 (480)
Q Consensus 187 ~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 264 (480)
.|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. . ...|+ ....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5677777777777776533 12344444467777777777777777776 2 11222 23333446667777777777
Q ss_pred HHHHHh
Q 038395 265 YKLVMD 270 (480)
Q Consensus 265 ~~~~~~ 270 (480)
.+.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0061 Score=56.87 Aligned_cols=128 Identities=12% Similarity=0.033 Sum_probs=91.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHh---hhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-------CC-CCCHh
Q 038395 211 TFIGLLSACAHAGLVNEGRRFFNTM---KDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-------KI-EPDSV 278 (480)
Q Consensus 211 t~~~ll~a~~~~g~~~~a~~~~~~m---~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~-~p~~~ 278 (480)
.|..|-+.|.-.|+++.|...++.- .+++|-.. ....+..+..++.-.|+++.|.+.++.. +- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555555566678899998776542 23444332 2456777888888899999998888764 21 22456
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc----C--CCCchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038395 279 LWGTLLGACRLHGNIALGEKIAEYLISQ----N--LANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 279 ~~~~li~a~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
+..+|...|....+++.|+.++.+-+.+ + .....++.+|.++|...|..+.|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 7778888998889999999888776552 1 2345688999999999999999988766554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.077 Score=47.82 Aligned_cols=173 Identities=12% Similarity=0.074 Sum_probs=102.1
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCC--CCh-H---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-
Q 038395 149 LINMYSKCGSLKDARLVFDRVND--KDV-V---VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH- 221 (480)
Q Consensus 149 li~~y~~~g~~~~A~~~f~~m~~--~~~-~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~- 221 (480)
....+.+.|++++|.+.|+.+.. |+. . ..-.++.+|.+.+++++|...|++..+.-..-....+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 34445567788888877777754 221 1 1233556777788888888888888764322223334334433331
Q ss_pred -c---------------CC---HHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHH
Q 038395 222 -A---------------GL---VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282 (480)
Q Consensus 222 -~---------------g~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 282 (480)
. .+ ..+|...|+.+.+. -|+ ..-..+|...+..+...--..- -.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---yP~-------------S~ya~~A~~rl~~l~~~la~~e-~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---YPN-------------SQYTTDATKRLVFLKDRLAKYE-LS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---CcC-------------ChhHHHHHHHHHHHHHHHHHHH-HH
Confidence 1 11 12333444444433 233 3334444443333310000011 13
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCC---chhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038395 283 LLGACRLHGNIALGEKIAEYLISQNLAN---SGTYVLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 283 li~a~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
+..-|.+.|.+..|..-++.+++.-|+. ..+...+..+|...|..++|..+...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4556888899999999999999987764 3466788999999999999998887664
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.07 Score=50.55 Aligned_cols=161 Identities=17% Similarity=0.059 Sum_probs=88.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCC-------ChHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038395 146 GTALINMYSKCGSLKDARLVFDRVNDK-------DVVVWNSMIVGYAM---HGFGKDALQLFNEMCRIRLKPSDITFIGL 215 (480)
Q Consensus 146 ~~~li~~y~~~g~~~~A~~~f~~m~~~-------~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 215 (480)
...++-.|-...+++...++++.+... ....-....-++.+ .|+.++|++++..+....-.++..||..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 335555688888889888888888763 11222233445556 78889999998886665566777777766
Q ss_pred HHHHHc---------cCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHH----HHHH---HhC----C---
Q 038395 216 LSACAH---------AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA----YKLV---MDM----K--- 272 (480)
Q Consensus 216 l~a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A----~~~~---~~m----~--- 272 (480)
...|-. ....++|...|.+.- .+.|+..+--.++..+...|...+. .++- ..+ +
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 655422 123555555555432 3445544433333333334432211 1111 110 1
Q ss_pred CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 038395 273 IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309 (480)
Q Consensus 273 ~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~ 309 (480)
-..+-..+.+++.++.-.|+.+.|.+..+++.+..|+
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 1123334455666666666666666666666665544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0018 Score=46.04 Aligned_cols=57 Identities=5% Similarity=0.017 Sum_probs=45.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 285 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
..+...++++.|.++++++++.+|+++..+.....+|.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 456777888888888888888888888888888888888888888888888776543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0039 Score=56.14 Aligned_cols=104 Identities=12% Similarity=0.081 Sum_probs=86.5
Q ss_pred cCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc---CChhHHHHHHHHHHHcCCCCchhHHH
Q 038395 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLH---GNIALGEKIAEYLISQNLANSGTYVL 316 (480)
Q Consensus 242 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~ 316 (480)
+-|...|-.|...|.+.|+++.|..-|.+. .+.| ++..+..+..++... ....++..+++++++.+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 446889999999999999999999999887 3333 466676666665544 34578999999999999999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCccC
Q 038395 317 LSNIYAAIGNWDGVARVRTLMKEKGVQKE 345 (480)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 345 (480)
|...+...|++.+|...++.|.+..-..+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999998765433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.26 Score=46.14 Aligned_cols=282 Identities=18% Similarity=0.160 Sum_probs=173.2
Q ss_pred HHHHHHHHH--HhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHHCCCCCCHH--HHHHH
Q 038395 43 SLTTMLTCY--AKQGEVAAARVLFDDME---EKDVVCWNVMIDGY--AQHGLANEALVLFRRMLAEKVEPNEV--TAVAV 113 (480)
Q Consensus 43 ~~~~li~~~--~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~pd~~--t~~~l 113 (480)
.|.+|-.++ .-.|+-..|.+.-.+.. ..|....-.|+.+- .-.|+++.|.+-|+.|... |... -+..|
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 345555554 33567777777665543 34555555555443 3458888888888888762 3222 23333
Q ss_pred HHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC-----CChH--HHHHHHHHHHh
Q 038395 114 LSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND-----KDVV--VWNSMIVGYAM 186 (480)
Q Consensus 114 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~~~--~~~~li~~~~~ 186 (480)
.-..-+.|+.+.|+++-+..-.. -+.-.-.+.+.+...+..|+++.|+++.+.-.. +|+. .--.|+.+-+.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 33445678888888887777643 233345677788888888999999888876543 3332 12223332221
Q ss_pred ---cCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHH
Q 038395 187 ---HGFGKDALQLFNEMCRIRLKPSDITF-IGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVE 262 (480)
Q Consensus 187 ---~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 262 (480)
..+...|...-.+..+ +.||.+.- .....++.+.|++.++-.+++.+-+. .|.+..+...+ +.+.|+..
T Consensus 239 s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdta 311 (531)
T COG3898 239 SLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDTA 311 (531)
T ss_pred HHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCcH
Confidence 2345566655554443 56665432 33456778889999999998888743 55555443332 34555532
Q ss_pred HHHHHHHhC----CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH-cCChhHHHHHHHH
Q 038395 263 EAYKLVMDM----KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAA-IGNWDGVARVRTL 336 (480)
Q Consensus 263 ~A~~~~~~m----~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~ 336 (480)
. +=+++. .++| +..+--.+..+-...|++..|..-.+.+....|.. ..|..|.++-.. .|+-.++...+.+
T Consensus 312 ~--dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 312 L--DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred H--HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHH
Confidence 2 222221 2344 46677777788888899999988888888888765 477777777644 4888888877766
Q ss_pred HHh
Q 038395 337 MKE 339 (480)
Q Consensus 337 m~~ 339 (480)
-.+
T Consensus 389 av~ 391 (531)
T COG3898 389 AVK 391 (531)
T ss_pred Hhc
Confidence 554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.033 Score=52.22 Aligned_cols=155 Identities=10% Similarity=0.040 Sum_probs=109.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHccCCHHHHHHHHHHhhhhcCCcCCccHHH---H------
Q 038395 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS--ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG---C------ 250 (480)
Q Consensus 182 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~---~------ 250 (480)
..+.-.|+.++|...--...+.. +. ..+..+++ ++-..++.+.|...|++.. .+.|+-..-. .
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 34556778887777665554432 11 12222222 2345577788888888766 3344422211 1
Q ss_pred ----HHHHHHHcCCHHHHHHHHHhC-C-----CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 038395 251 ----MVNLLSRAGQVEEAYKLVMDM-K-----IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNI 320 (480)
Q Consensus 251 ----li~~~~~~g~~~~A~~~~~~m-~-----~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 320 (480)
=..-..+.|++.+|.+.+.+. . .+|++..|.....+..+.|+.++|+.--++++++++.-..+|..-.++
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 122345789999999999887 3 445667788888888999999999999999999999888888889999
Q ss_pred HHHcCChhHHHHHHHHHHhCCC
Q 038395 321 YAAIGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 321 ~~~~g~~~~a~~~~~~m~~~~~ 342 (480)
+...++|++|.+-++...+..-
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999998876543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.28 Score=49.31 Aligned_cols=184 Identities=16% Similarity=0.193 Sum_probs=96.0
Q ss_pred CCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChHHHHHHH
Q 038395 55 GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN----EVTAVAVLSACGQIGALESGRWIH 130 (480)
Q Consensus 55 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~t~~~ll~~~~~~~~~~~a~~~~ 130 (480)
|++++|++++-.|.++|. -|..+.+.|++-...++++. -|-..| ...++.+...++....++.|.+++
T Consensus 748 g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred cchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554443 23344444555444444321 111111 124444555555555555555554
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 038395 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI 210 (480)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 210 (480)
.+-... ...+++|.+..++++-+.+-..+++ |....-.|..++.+.|.-++|.+.|-+-- .|
T Consensus 820 ~~~~~~----------e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p--- 881 (1189)
T KOG2041|consen 820 SYCGDT----------ENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP--- 881 (1189)
T ss_pred Hhccch----------HhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc---
Confidence 433211 2334444444445544444444443 44455667788888888888887765431 22
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHH--------------HHHHHHHHHcCCHHHHHHHHHhC
Q 038395 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY--------------GCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 211 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m 271 (480)
...+..|.+.+++.+|.++-+... -|.+.+. .--|..+.++|++-+|-+++.+|
T Consensus 882 --kaAv~tCv~LnQW~~avelaq~~~-----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qm 949 (1189)
T KOG2041|consen 882 --KAAVHTCVELNQWGEAVELAQRFQ-----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQM 949 (1189)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhcc-----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHH
Confidence 135667888888888877655433 1222211 11245667778877777777777
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.4 Score=48.28 Aligned_cols=137 Identities=15% Similarity=0.102 Sum_probs=73.5
Q ss_pred cCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC--C---HHHHHHHHHHHHHcCChHHHHHHHHH
Q 038395 23 GGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK--D---VVCWNVMIDGYAQHGLANEALVLFRR 97 (480)
Q Consensus 23 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--~---~~~~~~li~~~~~~g~~~~A~~~~~~ 97 (480)
-|++++|.+++-.|.++|. -|..+.+.|++-...++++.-..- | ..+|+.+...++....+++|.+.|..
T Consensus 747 ~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678888888888887775 355666777777776666543221 1 22455555544444444444444432
Q ss_pred H-------------------H--HCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhC
Q 038395 98 M-------------------L--AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156 (480)
Q Consensus 98 m-------------------~--~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 156 (480)
- . ...++-|...+-.+...+.+.|.-++|.+.|-.. +.+ -+.+..+...
T Consensus 822 ~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~----s~p------kaAv~tCv~L 891 (1189)
T KOG2041|consen 822 CGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR----SLP------KAAVHTCVEL 891 (1189)
T ss_pred ccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc----cCc------HHHHHHHHHH
Confidence 1 1 1123334445555566666666666665554322 221 2334455556
Q ss_pred CCHHHHHHHHHhcCCCCh
Q 038395 157 GSLKDARLVFDRVNDKDV 174 (480)
Q Consensus 157 g~~~~A~~~f~~m~~~~~ 174 (480)
+++.+|.++-+...-|.+
T Consensus 892 nQW~~avelaq~~~l~qv 909 (1189)
T KOG2041|consen 892 NQWGEAVELAQRFQLPQV 909 (1189)
T ss_pred HHHHHHHHHHHhccchhH
Confidence 666666666655544433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.18 Score=42.22 Aligned_cols=99 Identities=10% Similarity=0.010 Sum_probs=51.0
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHH
Q 038395 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252 (480)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 252 (480)
++..--.|..+....|+..+|...|++...--..-|......+.++....+++..|...++.+.+-..-.-++...-.+.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 33334445555566666666666666554433344555555555666666666666666655553211111123333445
Q ss_pred HHHHHcCCHHHHHHHHHhC
Q 038395 253 NLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~m 271 (480)
..|...|+..+|+.-|+..
T Consensus 168 R~laa~g~~a~Aesafe~a 186 (251)
T COG4700 168 RTLAAQGKYADAESAFEVA 186 (251)
T ss_pred HHHHhcCCchhHHHHHHHH
Confidence 5555566666665555554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0025 Score=44.77 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=50.4
Q ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCC
Q 038395 245 VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHG-NIALGEKIAEYLISQNL 308 (480)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~-~~~~a~~~~~~~~~~~~ 308 (480)
+..|..+...+.+.|++++|+..|++. ...| ++..|..+..++...| ++++|...++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456677777888888888888888777 4445 4677888888888888 68999999998888776
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0018 Score=45.33 Aligned_cols=53 Identities=23% Similarity=0.270 Sum_probs=24.4
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038395 258 AGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310 (480)
Q Consensus 258 ~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~ 310 (480)
.|++++|.++|+++ ...| +...+..+..+|...|++++|..+++++....|++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 44444554444444 2222 34444444555555555555555555555555444
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.071 Score=53.66 Aligned_cols=70 Identities=14% Similarity=0.074 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHH
Q 038395 208 SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDSVLW 280 (480)
Q Consensus 208 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~ 280 (480)
+...|..+.-.....|++++|...++++.. +.|+...|..+...+...|+.++|.+.+++. .+.|...+|
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 334555554444456777777777777663 3466666777777777777777777777665 444444443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.19 Score=44.46 Aligned_cols=230 Identities=12% Similarity=0.053 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCCh-H-HHHHHHHHHHHhCCCCCchhHHHHH
Q 038395 73 VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC-GQIGAL-E-SGRWIHSYIENSRNIKVNVQVGTAL 149 (480)
Q Consensus 73 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~-~~~~~~-~-~a~~~~~~~~~~~~~~~~~~~~~~l 149 (480)
..|+.-+..+++....++|..-+...-+.. .||-. |...=..+ .+.|.. . ..+.+|..+.+..|. -+++|
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgn-----pqesL 142 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYLGN-----PQESL 142 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Cccee-eeeccccCCCCcCccccHHHHHHHHHHHHhcCC-----cHHHH
Confidence 356666677777777777765554443321 11110 00000000 112221 1 223344454443122 25666
Q ss_pred HHHHHhCCCHHHHHHHHHhcCC--CCh--------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038395 150 INMYSKCGSLKDARLVFDRVND--KDV--------VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219 (480)
Q Consensus 150 i~~y~~~g~~~~A~~~f~~m~~--~~~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 219 (480)
...|.-..-+++-...|+.-.. ..+ ..-+.++..+.-.|.+.-.+.++++.++...+.+......|.+.-
T Consensus 143 dRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~ 222 (366)
T KOG2796|consen 143 DRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRIS 222 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 6666655555555555544332 222 234566666666778888888899888876666777788888888
Q ss_pred HccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHH-----HHHHcCCHHHHHHHHHhCCCC--CCHhHHHHHHHHHHhcCC
Q 038395 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN-----LLSRAGQVEEAYKLVMDMKIE--PDSVLWGTLLGACRLHGN 292 (480)
Q Consensus 220 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~-----~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~li~a~~~~~~ 292 (480)
.+.|+.+.|..+|+...+..+ ..+....+.++. .|.-++++.+|...+.++... .|+...|.=.-...-.|+
T Consensus 223 MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~ 301 (366)
T KOG2796|consen 223 MQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK 301 (366)
T ss_pred HhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH
Confidence 889999999999998776533 344444444432 344566777777777776321 234444443333445677
Q ss_pred hhHHHHHHHHHHHcCCCC
Q 038395 293 IALGEKIAEYLISQNLAN 310 (480)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~ 310 (480)
...|.+..+.+.+..|..
T Consensus 302 l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 302 LKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHhccCCcc
Confidence 777888887777777754
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.012 Score=50.44 Aligned_cols=97 Identities=18% Similarity=0.200 Sum_probs=62.3
Q ss_pred HHHHhhc--CCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-------------
Q 038395 61 RVLFDDM--EEKDVVCWNVMIDGYAQH-----GLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI------------- 120 (480)
Q Consensus 61 ~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~------------- 120 (480)
...|+.. ..+|..+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 345666666666666543 45555555666777777777777777777765431
Q ss_pred ---CChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCC
Q 038395 121 ---GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158 (480)
Q Consensus 121 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 158 (480)
.+-+-|..++++|... |+-||..++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 1335577777777777 777777777777777765543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.012 Score=53.57 Aligned_cols=94 Identities=13% Similarity=0.062 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---chhHHHHH
Q 038395 247 HYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN---SGTYVLLS 318 (480)
Q Consensus 247 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~ 318 (480)
.|...+..+.+.|++++|...|+.. ...|+ ...+..+..++...|+++.|...|+.+++..|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 4555555555667777777777766 32343 2355567777777888888888888888776654 33445566
Q ss_pred HHHHHcCChhHHHHHHHHHHhC
Q 038395 319 NIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 319 ~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
.+|...|++++|.++++.+.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777788888888888777654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.011 Score=48.56 Aligned_cols=86 Identities=9% Similarity=0.047 Sum_probs=74.1
Q ss_pred HHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHH
Q 038395 254 LLSRAGQVEEAYKLVMDM-KIE-PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVA 331 (480)
Q Consensus 254 ~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 331 (480)
-+-..|++++|..+|+-+ -.. -|..-|..|...+...++++.|...+..+..++++++.++......|...|+.+.|.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 345789999999999887 222 356668888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 038395 332 RVRTLMKE 339 (480)
Q Consensus 332 ~~~~~m~~ 339 (480)
..|+...+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 99988766
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0048 Score=50.88 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHH-----hCCCccCC
Q 038395 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK-----EKGVQKEP 346 (480)
Q Consensus 278 ~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~ 346 (480)
.....++..+...|+++.|....+.++..+|-+...|..++.+|...|+..+|.++|+.+. +.|+.|.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 3456677788899999999999999999999999999999999999999999999999884 34776654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.55 Score=44.93 Aligned_cols=129 Identities=16% Similarity=0.159 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHH-HHHHHHH
Q 038395 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDSVLW-GTLLGAC 287 (480)
Q Consensus 210 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~-~~li~a~ 287 (480)
..|...+++..+..-++.|+.+|-+..+..-+.+++..+++++..++ .|+..-|..+|+-- ..-||...| +-.+.-+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 45667778778888899999999999876336788999999998765 57788888888754 334565444 4556666
Q ss_pred HhcCChhHHHHHHHHHHHcCCC--CchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 038395 288 RLHGNIALGEKIAEYLISQNLA--NSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
..-++-+.|..+|+..++.-.. -...|..++.--+.-|+...|..+=++|.+
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 7778888899999866653222 235788888877888888777777666654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.58 Score=43.96 Aligned_cols=265 Identities=17% Similarity=0.100 Sum_probs=173.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHH--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HccCChHHHHHHHHH
Q 038395 57 VAAARVLFDDMEEKDVVCWNVMIDGYAQ--HGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC--GQIGALESGRWIHSY 132 (480)
Q Consensus 57 ~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~--~~~~~~~~a~~~~~~ 132 (480)
.-.+.+.|..-+. -.-|.+|-.++.. .|+-..|.++-.+-.+. +.-|...+..++.+- .-.|+.+.|++-|+.
T Consensus 69 P~t~~Ryfr~rKR--drgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeA 145 (531)
T COG3898 69 PYTARRYFRERKR--DRGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEA 145 (531)
T ss_pred cHHHHHHHHHHHh--hhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 4455556654332 2456777777665 47777887777665543 455667777777764 346999999999999
Q ss_pred HHHhCCCCCchh-HHHHHHHHHHhCCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC
Q 038395 133 IENSRNIKVNVQ-VGTALINMYSKCGSLKDARLVFDRVND--K-DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR-LKP 207 (480)
Q Consensus 133 ~~~~~~~~~~~~-~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p 207 (480)
|... +.... -...|.-.--+.|+.+.|+..-+.... | -.-.|.+.+...+..|+++.|+++.+.-+... +.+
T Consensus 146 Ml~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~ 222 (531)
T COG3898 146 MLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEK 222 (531)
T ss_pred HhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhch
Confidence 9852 22211 122333344567899988888777654 2 34578899999999999999999999876533 455
Q ss_pred CHHH--HHHHHHHHH---ccCCHHHHHHHHHHhhhhcCCcCCccHHH-HHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHH
Q 038395 208 SDIT--FIGLLSACA---HAGLVNEGRRFFNTMKDEYAIEPKVEHYG-CMVNLLSRAGQVEEAYKLVMDM-KIEPDSVLW 280 (480)
Q Consensus 208 ~~~t--~~~ll~a~~---~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~ 280 (480)
+..- -..|+.+-. -..+...|...-.+.. .+.|+..--. .-..+|.+.|++.++-.+++.+ +..|.+.+|
T Consensus 223 ~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia 299 (531)
T COG3898 223 DVAERSRAVLLTAKAMSLLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA 299 (531)
T ss_pred hhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH
Confidence 5432 223333322 1234666666554444 5577754432 3346889999999999999999 778888887
Q ss_pred HHHHHHHHhcCChhHH-HHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHH
Q 038395 281 GTLLGACRLHGNIALG-EKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVAR 332 (480)
Q Consensus 281 ~~li~a~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 332 (480)
...+. .+.|+.... .+-.+++..+.|++......+..+-...|++..|..
T Consensus 300 ~lY~~--ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa 350 (531)
T COG3898 300 LLYVR--ARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARA 350 (531)
T ss_pred HHHHH--hcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHH
Confidence 65443 355553222 233445555788888888888888888888766553
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.051 Score=42.72 Aligned_cols=81 Identities=16% Similarity=0.044 Sum_probs=38.5
Q ss_pred HHHcCCHHHHHHHHHhC---CCCCC--HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC---CchhHHHHHHHHHHcCC
Q 038395 255 LSRAGQVEEAYKLVMDM---KIEPD--SVLWGTLLGACRLHGNIALGEKIAEYLISQNLA---NSGTYVLLSNIYAAIGN 326 (480)
Q Consensus 255 ~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~ 326 (480)
+-..|+.++|..+|++. +.... ...+-.+.+.+...|++++|..+++......|+ +......+..++...|+
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr 90 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGR 90 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCC
Confidence 33445555555555443 21111 223334445555555555555555555554444 33333344445555566
Q ss_pred hhHHHHHHH
Q 038395 327 WDGVARVRT 335 (480)
Q Consensus 327 ~~~a~~~~~ 335 (480)
.++|.+.+-
T Consensus 91 ~~eAl~~~l 99 (120)
T PF12688_consen 91 PKEALEWLL 99 (120)
T ss_pred HHHHHHHHH
Confidence 655555543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.26 Score=38.76 Aligned_cols=139 Identities=14% Similarity=0.135 Sum_probs=80.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHH
Q 038395 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAY 265 (480)
Q Consensus 186 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 265 (480)
..|..++..++..+..... +..-++-++.-....-+-+-..+.++.+-+-+.+. .+|++....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHHH
Confidence 3566666677766665432 23334434433333333344444444444322221 345555555
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 038395 266 KLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343 (480)
Q Consensus 266 ~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 343 (480)
..+-.++ .+.......+.+....|.-+.-.+++..+.+.+..++.....+.++|.+.|+..++.+++.+.-++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 5555543 344556667788889999999999999988766677788899999999999999999999999999975
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.028 Score=44.66 Aligned_cols=49 Identities=14% Similarity=0.288 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHH
Q 038395 205 LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253 (480)
Q Consensus 205 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 253 (480)
..|+..+..+++.+++..|++..|.++.+...+.|+++.+...|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4566666666666666666666666666666666665555555555554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.003 Score=37.13 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=30.0
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHcCChhHHH
Q 038395 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVA 331 (480)
Q Consensus 300 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 331 (480)
++++++++|+++.+|..|...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67889999999999999999999999999986
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.013 Score=41.48 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=49.8
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhH
Q 038395 253 NLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTY 314 (480)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 314 (480)
..|.+.+++++|.++++.+ ...| ++..|......+...|+++.|...++.+++..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 5677888899998888888 4445 466777788888899999999999999999998776443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0071 Score=38.02 Aligned_cols=41 Identities=17% Similarity=0.256 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHH
Q 038395 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLS 318 (480)
Q Consensus 278 ~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 318 (480)
.+|..+..++...|++++|+++++++++..|+++..+..|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 46778889999999999999999999999999988777665
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.2 Score=43.85 Aligned_cols=50 Identities=20% Similarity=0.336 Sum_probs=23.1
Q ss_pred HHhcCCHHHHHHHHhhcCC--CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038395 51 YAKQGEVAAARVLFDDMEE--KD----VVCWNVMIDGYAQHGLANEALVLFRRMLA 100 (480)
Q Consensus 51 ~~~~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 100 (480)
+...|++++|.+.|+.+.. |+ ..+.-.++.++-+.|++++|...|++.++
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555555442 11 12333444555555555555555555544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.098 Score=47.61 Aligned_cols=99 Identities=11% Similarity=0.107 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCc----cHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHH
Q 038395 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV----EHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD----SVLW 280 (480)
Q Consensus 210 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~ 280 (480)
..|...+....+.|++++|...|+.+.+.+ |+. ..+-.+...|...|++++|...|+.+ ...|+ ...+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 345555554456688888888888888653 443 35667778888888998888888887 22232 4455
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 038395 281 GTLLGACRLHGNIALGEKIAEYLISQNLANS 311 (480)
Q Consensus 281 ~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~ 311 (480)
..+...+...|+.+.|...++.+++..|++.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 5666777888999999999999999888764
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.019 Score=55.12 Aligned_cols=95 Identities=9% Similarity=0.034 Sum_probs=58.3
Q ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHH
Q 038395 245 VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDS----VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN 319 (480)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 319 (480)
...++.+..+|.+.|++++|...|++. .+.|+. .+|..+..+|...|+.++|...++++++..+. .|..+..
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~~ 151 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTILN 151 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHHh
Confidence 456677777777777777777777774 556653 34777777777777777777777777775321 1211111
Q ss_pred --HHHHcCChhHHHHHHHHHHhCCC
Q 038395 320 --IYAAIGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 320 --~~~~~g~~~~a~~~~~~m~~~~~ 342 (480)
.+....+..+..++++.+.+-|.
T Consensus 152 DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 152 DPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred CcchhhhcccHHHHHHHHHHHHhCC
Confidence 11122333466666666666665
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.13 Score=42.30 Aligned_cols=66 Identities=20% Similarity=0.306 Sum_probs=34.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHH
Q 038395 146 GTALINMYSKCGSLKDARLVFDRVND--K-DVVVWNSMIVGYAMHGFGKDALQLFNEMCR-----IRLKPSDIT 211 (480)
Q Consensus 146 ~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t 211 (480)
...++..+...|+++.|..+.+.+.. | |...|..+|.+|...|+..+|++.|+++.. .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44455556666666666666665543 2 455666666666666666666666665532 356665543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.34 E-value=1.1 Score=43.16 Aligned_cols=71 Identities=11% Similarity=0.084 Sum_probs=55.1
Q ss_pred HHHHhCCCCCC----HhHHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 038395 266 KLVMDMKIEPD----SVLWGTLLGA--CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337 (480)
Q Consensus 266 ~~~~~m~~~p~----~~~~~~li~a--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 337 (480)
.++++.|+.|- ...-|.|..| +..+|++.++.-....+.+..| ++.+|..+.-......++++|..++..+
T Consensus 445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34445566553 3445555554 4678999999999999999999 7789999999999999999999999765
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.075 Score=42.22 Aligned_cols=53 Identities=13% Similarity=0.165 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHH
Q 038395 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYS 154 (480)
Q Consensus 102 g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 154 (480)
...|+..++.+++.+++..+++..|.++.+...+..+++.+..+|..|+.-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 45677788888888888888888888888887777677777777777776433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.21 E-value=1.7 Score=44.35 Aligned_cols=303 Identities=12% Similarity=0.065 Sum_probs=159.6
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCC---hhHHHHHHHHHHhcC---CHHHHHHHHhhcCC--CCHHHHHHHHHHHHHcC
Q 038395 15 SLVDLYARGGDVLSAEKLFATMPQRS---LVSLTTMLTCYAKQG---EVAAARVLFDDMEE--KDVVCWNVMIDGYAQHG 86 (480)
Q Consensus 15 ~ll~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g---~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g 86 (480)
.+++-+...+.+..|.++-..+..|- ...+.....-+.+.. +-+.+..+=+++.. ..-++|..+.+.--+.|
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~G 521 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEG 521 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcC
Confidence 34566677778888888877776654 333444444444442 23334444444444 35567888887777888
Q ss_pred ChHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhC----------CCCCchhHHHHHHH-
Q 038395 87 LANEALVLFRRMLAEKVE----PNEVTAVAVLSACGQIGALESGRWIHSYIENSR----------NIKVNVQVGTALIN- 151 (480)
Q Consensus 87 ~~~~A~~~~~~m~~~g~~----pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----------~~~~~~~~~~~li~- 151 (480)
+++-|..+++.=...+.. .+..-+...+.-+...|+.+...+++-.+.+.. ..+....+|.-++.
T Consensus 522 R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~ 601 (829)
T KOG2280|consen 522 RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRH 601 (829)
T ss_pred cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHh
Confidence 888887776542221110 012234455666667777777666666555430 11111122221111
Q ss_pred --------HHHhCCCHHHHHHHH--HhcC-----CCChHHHHHHHHHHHhcCCh---H-------HHHHHHHHHHH-cCC
Q 038395 152 --------MYSKCGSLKDARLVF--DRVN-----DKDVVVWNSMIVGYAMHGFG---K-------DALQLFNEMCR-IRL 205 (480)
Q Consensus 152 --------~y~~~g~~~~A~~~f--~~m~-----~~~~~~~~~li~~~~~~g~~---~-------~A~~l~~~m~~-~g~ 205 (480)
.|-. ++-..+...| +... ..-........+.+++.... + +-+.+.+.+.. .|.
T Consensus 602 ~~~~~l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~ 680 (829)
T KOG2280|consen 602 QDRATLYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGG 680 (829)
T ss_pred hchhhhhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1111 1111111111 0000 00111112223333333221 1 11222222221 233
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHH
Q 038395 206 KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285 (480)
Q Consensus 206 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~ 285 (480)
.....|.+--+.-+...|+..+|.++-.+.+ -||-..|-.=+.+++..+++++-+++-+.+. .+.-|.-...
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe 752 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVE 752 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHH
Confidence 3334445555556667777778777665554 4777777777778888888888777777653 2455666777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHH
Q 038395 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVR 334 (480)
Q Consensus 286 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 334 (480)
+|.+.|+.++|.+++-+.-. +.-...+|.+.|++.+|.+.-
T Consensus 753 ~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHH
Confidence 88888888888777654321 114566788888887777654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.18 Score=44.08 Aligned_cols=49 Identities=12% Similarity=0.119 Sum_probs=37.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCch---hHHHHHHHHHHcCChhHHH
Q 038395 283 LLGACRLHGNIALGEKIAEYLISQNLANSG---TYVLLSNIYAAIGNWDGVA 331 (480)
Q Consensus 283 li~a~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~ 331 (480)
+..-|.+.|.+..|..-++.+++.-|+... +...++.+|.+.|..+.+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 456688889999999999999998887543 4567888999999887544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.063 Score=47.84 Aligned_cols=110 Identities=13% Similarity=0.125 Sum_probs=84.4
Q ss_pred HHHHHHHhcC--CCChHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----------
Q 038395 161 DARLVFDRVN--DKDVVVWNSMIVGYAMH-----GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG---------- 223 (480)
Q Consensus 161 ~A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 223 (480)
-.++.|.... ++|..+|-+++..|... ++.+=....++.|.+.|+.-|..+|+.||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456677776 57888898888888654 567777778889999999999999999998775542
Q ss_pred ------CHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCH-HHHHHHHHhC
Q 038395 224 ------LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQV-EEAYKLVMDM 271 (480)
Q Consensus 224 ------~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m 271 (480)
+-+-+..++++|. .+|+-||-++-..|++++++.+-. .+..++.--|
T Consensus 132 F~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HhhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 2345778899998 579999999999999999988764 3445554444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.019 Score=41.33 Aligned_cols=61 Identities=13% Similarity=0.094 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC---CchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038395 278 VLWGTLLGACRLHGNIALGEKIAEYLISQ----NLA---NSGTYVLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 278 ~~~~~li~a~~~~~~~~~a~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
.+++.+...+...|++++|+..++++++. +++ ...++..+..+|...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666666777777777777777766652 221 13456677777777777777777776653
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.02 Score=41.18 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038395 247 HYGCMVNLLSRAGQVEEAYKLVMDM-------K-IEPD-SVLWGTLLGACRLHGNIALGEKIAEYLIS 305 (480)
Q Consensus 247 ~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~ 305 (480)
+|+.+...|.+.|++++|++.|++. + ..|+ ..++..+...+...|++++|++.+++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455555555566655555555544 1 1122 45566677777777777777777777654
|
... |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.74 E-value=1.2 Score=39.31 Aligned_cols=53 Identities=13% Similarity=0.048 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH----cCCCCchhHHHHHHHHHHcCChhHHHHHH
Q 038395 281 GTLLGACRLHGNIALGEKIAEYLIS----QNLANSGTYVLLSNIYAAIGNWDGVARVR 334 (480)
Q Consensus 281 ~~li~a~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 334 (480)
-..|-.+....|+..|++.++.--+ .++.+..+...|+.+| ..|+.+++.++.
T Consensus 194 va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 194 VAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 3334444445566666666666444 2334445555566555 345656555443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.73 E-value=1.8 Score=41.22 Aligned_cols=71 Identities=17% Similarity=0.105 Sum_probs=41.3
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCC---C----HHHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038395 47 MLTCYAKQGEVAAARVLFDDMEEK---D----VVCWNVMIDGYAQ---HGLANEALVLFRRMLAEKVEPNEVTAVAVLSA 116 (480)
Q Consensus 47 li~~~~~~g~~~~A~~~f~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 116 (480)
++-+|-...+++..+++.+.+... + ...--...-++-+ .|+.++|++++..+....-.+++.||..+.+.
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 333466667777777777777653 1 1111123334445 67777777777775555556666777666665
Q ss_pred H
Q 038395 117 C 117 (480)
Q Consensus 117 ~ 117 (480)
|
T Consensus 227 y 227 (374)
T PF13281_consen 227 Y 227 (374)
T ss_pred H
Confidence 4
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.25 Score=44.78 Aligned_cols=110 Identities=10% Similarity=-0.024 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhC--C-CHHHHHHHHHhcCCC---ChHHH
Q 038395 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC--G-SLKDARLVFDRVNDK---DVVVW 177 (480)
Q Consensus 104 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~--g-~~~~A~~~f~~m~~~---~~~~~ 177 (480)
+-|...|-.|..+|...|+.+.|...|....+.. ++++..+..+..++... + ...++.++|+++... |+.+-
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 3466677777777777777777777777776642 33344444444433322 2 345677777776542 45566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038395 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217 (480)
Q Consensus 178 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 217 (480)
.-|...+.+.|++.+|...|+.|.+. -|.......++.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 66667777788888888888888774 333334444444
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.65 E-value=2.8 Score=42.20 Aligned_cols=85 Identities=11% Similarity=0.013 Sum_probs=52.8
Q ss_pred HHHHHHhCCCHHHHHHHH-------------HhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038395 149 LINMYSKCGSLKDARLVF-------------DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215 (480)
Q Consensus 149 li~~y~~~g~~~~A~~~f-------------~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 215 (480)
...++...|+.++|..+. .++...+..+...+..-+-+...+.-|-++|.+|-. ..++
T Consensus 709 AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksi 779 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSL 779 (1081)
T ss_pred HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHH
Confidence 344555566666665443 233333445555555555566677788888888753 2356
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhcCCcCCc
Q 038395 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKV 245 (480)
Q Consensus 216 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 245 (480)
+......+++++|..+-+... .+.||+
T Consensus 780 VqlHve~~~W~eAFalAe~hP---e~~~dV 806 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHP---EFKDDV 806 (1081)
T ss_pred hhheeecccchHhHhhhhhCc---cccccc
Confidence 777888899999988777655 335554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.21 Score=39.16 Aligned_cols=89 Identities=18% Similarity=0.187 Sum_probs=66.4
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCc---hhHHHHHHHHHHcCCh
Q 038395 254 LLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQN-LANS---GTYVLLSNIYAAIGNW 327 (480)
Q Consensus 254 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~-~~~~---~~~~~l~~~~~~~g~~ 327 (480)
+++..|+++.|++.|.+. .+-| +...||.-..++.-+|+.++|+.-+++++++. +... .+|..-...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 456778888888888776 3333 57778888888888888888888888888854 3321 2566677778888888
Q ss_pred hHHHHHHHHHHhCCC
Q 038395 328 DGVARVRTLMKEKGV 342 (480)
Q Consensus 328 ~~a~~~~~~m~~~~~ 342 (480)
+.|..-|+..-+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888888888877764
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.83 Score=43.75 Aligned_cols=144 Identities=13% Similarity=0.134 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCC-CCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CChHHH-HHHHH
Q 038395 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRN-IKVNVQVGTALINMYSKCGSLKDARLVFDRVND--KDVVVW-NSMIV 182 (480)
Q Consensus 107 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~-~~li~ 182 (480)
...|...+++..+..-++.|+.+|....+. + ..+++.++++++..|+ .|+..-|.++|+--.. +|...| +-.+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345556666666666677777777777666 5 5566677777776655 4666666677654222 343332 33445
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHH
Q 038395 183 GYAMHGFGKDALQLFNEMCRIRLKPS--DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLS 256 (480)
Q Consensus 183 ~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 256 (480)
-+...++-+.|..+|+..... +..+ ...|..+|+-=+.-|++..+..+-+.+... -|...+.......|+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~---~pQen~~evF~Sry~ 546 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL---VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH---cCcHhHHHHHHHHHh
Confidence 555666667777777644332 1112 345666676666777777776666666532 354444444444443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.68 Score=49.61 Aligned_cols=93 Identities=22% Similarity=0.256 Sum_probs=57.6
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHccCCHH
Q 038395 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT--FIGLLSACAHAGLVN 226 (480)
Q Consensus 149 li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~a~~~~g~~~ 226 (480)
..-+|.++|+.++|.+.+ ...|++.+|+.+-.+|... -|... -..|..-+...++.-
T Consensus 958 Aal~Ye~~GklekAl~a~------------------~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 958 AALMYERCGKLEKALKAY------------------KECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHHHHHhccHHHHHHHH------------------HHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccch
Confidence 344567777777775544 4467888888887776421 12221 245666667777777
Q ss_pred HHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 227 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
+|-++......+ ..-.+..|+++..+++|.++....
T Consensus 1017 eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1017 EAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred hHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 777766655532 234566677777888887776655
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.42 E-value=3.7 Score=42.10 Aligned_cols=270 Identities=13% Similarity=0.054 Sum_probs=138.6
Q ss_pred hHHHHHHHHHHhcCC---hHHHHHHHhhCCC--CChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC--------CHHHHHH
Q 038395 11 YVSTSLVDLYARGGD---VLSAEKLFATMPQ--RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK--------DVVCWNV 77 (480)
Q Consensus 11 ~~~~~ll~~~~~~g~---~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--------~~~~~~~ 77 (480)
.+|.....-+.+..+ -+.+..+=+++.. ...++|..+..---.+|+.+-|..+++.=+.. +..-+..
T Consensus 472 ~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~ 551 (829)
T KOG2280|consen 472 RVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSL 551 (829)
T ss_pred HHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHH
Confidence 445555555555422 2233333334443 35577888888778888888888887654421 2223444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC----------CCC-CHHHHHHHHH---------HHHccCChHHHHHHHHHH--HH
Q 038395 78 MIDGYAQHGLANEALVLFRRMLAEK----------VEP-NEVTAVAVLS---------ACGQIGALESGRWIHSYI--EN 135 (480)
Q Consensus 78 li~~~~~~g~~~~A~~~~~~m~~~g----------~~p-d~~t~~~ll~---------~~~~~~~~~~a~~~~~~~--~~ 135 (480)
-+.-..+.|+.+-...++..+.+.- ..| ....|.-+++ .|-...+....-.++-+- ..
T Consensus 552 AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~ 631 (829)
T KOG2280|consen 552 ALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAA 631 (829)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhh
Confidence 5555566666666555554443310 111 1122222222 111122222222221111 00
Q ss_pred h--CCCCCchhHHHHHHHHHHhCCCHHHH----------HHHHHhcCCC-----ChHHHHHHHHHHHhcCChHHHHHHHH
Q 038395 136 S--RNIKVNVQVGTALINMYSKCGSLKDA----------RLVFDRVNDK-----DVVVWNSMIVGYAMHGFGKDALQLFN 198 (480)
Q Consensus 136 ~--~~~~~~~~~~~~li~~y~~~g~~~~A----------~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~ 198 (480)
. .+..|+ .....+.+++.....-. .++++.+... .-.+.+--+.-+...|+..+|.++-+
T Consensus 632 ~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~ 708 (829)
T KOG2280|consen 632 ETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKS 708 (829)
T ss_pred hhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHH
Confidence 0 022332 23334444444332211 2222222211 11233444555666778888877766
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHh
Q 038395 199 EMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278 (480)
Q Consensus 199 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~ 278 (480)
+.+ -||...|..=+.+++..+++++-+++-...+ .+.-|.-.+.++.+.|+.+||.+++-+.+-.+
T Consensus 709 ~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk-------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~--- 774 (829)
T KOG2280|consen 709 DFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK-------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ--- 774 (829)
T ss_pred hcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-------CCCCchhHHHHHHhcccHHHHhhhhhccCChH---
Confidence 653 5677777777778888888877666544433 14456667777888888888888887764222
Q ss_pred HHHHHHHHHHhcCChhHHHHHH
Q 038395 279 LWGTLLGACRLHGNIALGEKIA 300 (480)
Q Consensus 279 ~~~~li~a~~~~~~~~~a~~~~ 300 (480)
-...+|...|++.+|.+..
T Consensus 775 ---ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 775 ---EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred ---HHHHHHHHhccHHHHHHHH
Confidence 3456666777776666543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.2 Score=47.18 Aligned_cols=64 Identities=8% Similarity=-0.078 Sum_probs=56.4
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 277 ~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
..++..|...+.+.+++..|++...+.++.+|+|..+..--..+|...|+++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3456777788889999999999999999999999999999999999999999999999998765
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.14 Score=49.28 Aligned_cols=61 Identities=13% Similarity=0.087 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCcc----HHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 208 SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE----HYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 208 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
+...++.+..+|...|++++|...|+...+ +.|+.. .|..+..+|...|++++|.+.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456788888888889999999999888773 367643 4788888889999999998888876
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.16 E-value=2.6 Score=38.89 Aligned_cols=60 Identities=10% Similarity=-0.038 Sum_probs=27.7
Q ss_pred HHHHHHHHHHccCCh---HHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 038395 109 TAVAVLSACGQIGAL---ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170 (480)
Q Consensus 109 t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 170 (480)
++..++.++...+.. +++..+++.+.+. .+..+.++-.-+..+.+.++.+.+.+++.+|.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 344445555544433 3344444445432 22223333334444444555666666665554
|
It is also involved in sporulation []. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.22 Score=44.52 Aligned_cols=91 Identities=15% Similarity=0.245 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC---CchhHHH
Q 038395 247 HYGCMVNLLSRAGQVEEAYKLVMDM-------KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA---NSGTYVL 316 (480)
Q Consensus 247 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~ 316 (480)
.|+.-++.| +.|++.+|..-|... ...||..-| |..++...|+++.|..+|..+.+..|+ -+..+.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 455555543 455677777766655 123444444 677777777777777777777775554 3446666
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhC
Q 038395 317 LSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
|.....+.|+.++|..+++++.++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 777777777888888877777654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.01 E-value=1.5 Score=39.83 Aligned_cols=116 Identities=10% Similarity=0.025 Sum_probs=53.9
Q ss_pred HhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 038395 52 AKQGEVAAARVLFDDMEE---KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128 (480)
Q Consensus 52 ~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~ 128 (480)
...|++.+|..+|+.... .+...--.|+.+|...|+.+.|..++..+...--.........-+....+.....+..+
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~ 224 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD 224 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 445566666665555442 23334445555666666666666666555433111111222222333333333333333
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 038395 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170 (480)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 170 (480)
+.+..-+ .+-|...-..+...|.-.|+.+.|.+.+-.+.
T Consensus 225 l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 225 LQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333332 23345555555555555555555555554443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.97 E-value=5.8 Score=42.98 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHcC--ChHHHHHHHHHHHH
Q 038395 74 CWNVMIDGYAQHG--LANEALVLFRRMLA 100 (480)
Q Consensus 74 ~~~~li~~~~~~g--~~~~A~~~~~~m~~ 100 (480)
-.-.+|..|++.+ ..++|+....+...
T Consensus 792 ~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 792 FNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 3446778888887 66777777766664
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.92 E-value=2.3 Score=36.96 Aligned_cols=194 Identities=17% Similarity=0.137 Sum_probs=109.9
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcC-----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038395 143 VQVGTALINMYSKCGSLKDARLVFDRVN-----DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217 (480)
Q Consensus 143 ~~~~~~li~~y~~~g~~~~A~~~f~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 217 (480)
..........+...+.+..+...+.... ......+..+...+...+....+.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3445555556666666666666555543 12334455555555566666666666666655333321 11111122
Q ss_pred -HHHccCCHHHHHHHHHHhhhhcCCcC----CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC--HhHHHHHHHHHHh
Q 038395 218 -ACAHAGLVNEGRRFFNTMKDEYAIEP----KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD--SVLWGTLLGACRL 289 (480)
Q Consensus 218 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~li~a~~~ 289 (480)
.+...|+.+.+...+..... ..| ....+......+...++.++|...+... ...++ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 56666777777777766642 122 1222333333355667777777777666 32333 4566666667777
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 290 HGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
.++.+.+...+.......|.....+..+...+...|.++++...+....+.
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777764445555555555666677777776666543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.88 E-value=1.2 Score=43.90 Aligned_cols=104 Identities=16% Similarity=0.181 Sum_probs=47.5
Q ss_pred HHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038395 151 NMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230 (480)
Q Consensus 151 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 230 (480)
+...++|+++.|.++-++.. +...|..|.....+.|+.+-|.+.|.+..+ |..|+-.|.-.|+.+.-.+
T Consensus 326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 33445555555555544433 344555555555555655555555554321 3333334444555544444
Q ss_pred HHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038395 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272 (480)
Q Consensus 231 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 272 (480)
+.+..... | -++....++.-.|++++..+++.+-+
T Consensus 395 l~~~a~~~-~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 395 LAKIAEER-G------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHc-c------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 44333321 1 13333444444555555555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.3 Score=43.68 Aligned_cols=110 Identities=10% Similarity=0.102 Sum_probs=77.7
Q ss_pred HHHHHhhcC--CCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-----------
Q 038395 60 ARVLFDDME--EKDVVCWNVMIDGYAQH-----GLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG----------- 121 (480)
Q Consensus 60 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~----------- 121 (480)
.++.|.... ++|-.+|-+.+..+... +..+=....++.|.+-|+.-|..+|+.||+.+-+-.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 355666666 57788888888777654 445555666778888899999999999998765432
Q ss_pred -----ChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCC-HHHHHHHHHhcC
Q 038395 122 -----ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS-LKDARLVFDRVN 170 (480)
Q Consensus 122 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~f~~m~ 170 (480)
+-+-+..++++|... |+-||..+-..|++++++.+- ..+..+..-.|+
T Consensus 133 ~HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hhCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 223477788888888 888888888888888887764 334444444444
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.78 E-value=3.9 Score=38.96 Aligned_cols=246 Identities=13% Similarity=-0.048 Sum_probs=136.7
Q ss_pred HHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-CCHH--HHHHHHHHHHHcCChHHHH
Q 038395 19 LYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEE-KDVV--CWNVMIDGYAQHGLANEAL 92 (480)
Q Consensus 19 ~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~~~~--~~~~li~~~~~~g~~~~A~ 92 (480)
.+-+..++..|+..+....+ | ++.-|..-...+...|++++|.--.+.-.+ .|-. ...-.-.++...++..+|.
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHH
Confidence 33344455555555554332 2 344455556666677777776655543332 1111 1111222222222222222
Q ss_pred HHH---------------HHHHHCC-CCCCHHHHHHHHH-HHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHH--HHH
Q 038395 93 VLF---------------RRMLAEK-VEPNEVTAVAVLS-ACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI--NMY 153 (480)
Q Consensus 93 ~~~---------------~~m~~~g-~~pd~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li--~~y 153 (480)
+.| +...... -+|.-.++..+-. ++...++.++|.++--.+.+. -..+ .+..++ .++
T Consensus 138 ~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--d~~n--~~al~vrg~~~ 213 (486)
T KOG0550|consen 138 EKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL--DATN--AEALYVRGLCL 213 (486)
T ss_pred HHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc--ccch--hHHHHhccccc
Confidence 222 2221111 1233445544433 346678889998887777764 1112 222222 234
Q ss_pred HhCCCHHHHHHHHHhcCCCChH---------------HHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHHHHHH
Q 038395 154 SKCGSLKDARLVFDRVNDKDVV---------------VWNSMIVGYAMHGFGKDALQLFNEMCRI---RLKPSDITFIGL 215 (480)
Q Consensus 154 ~~~g~~~~A~~~f~~m~~~~~~---------------~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~l 215 (480)
.-.++.+.|...|++...-|.. .|..=.+-..++|++.+|.+.|.+.+.. +++|+...|...
T Consensus 214 yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 214 YYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 4567889999999887753222 2333344556889999999999998763 355666677777
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 216 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
..+..+.|+.++|..--+... .+.|. +..|..-..++.-.+++++|.+-++..
T Consensus 294 a~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778889999999988777665 23332 222222234455567889998888776
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.69 E-value=1.3 Score=43.81 Aligned_cols=129 Identities=13% Similarity=0.064 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 038395 44 LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123 (480)
Q Consensus 44 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~ 123 (480)
.+.++.-+-+.|-.+.|+++-+.- ..-.....+.|+.+.|.++-++ .++...|..|...+.+.|++
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~ 363 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNI 363 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCH
Confidence 555555555555555555543221 1112223344555555444221 22444555555555555555
Q ss_pred HHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 038395 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFN 198 (480)
Q Consensus 124 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 198 (480)
+.|++.+..... +..|+-.|.-.|+.+.-.++-+....+. -+|....++...|+.++..+++.
T Consensus 364 ~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~--~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 364 ELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAEERG--DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555544332 3444444555555544444443333221 12233333334455555554444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.67 E-value=1.9 Score=34.91 Aligned_cols=41 Identities=24% Similarity=0.150 Sum_probs=17.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHh
Q 038395 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155 (480)
Q Consensus 113 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~ 155 (480)
++..+...+.......+++.+.+. + ..+...++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~-~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKL-N-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHcc-C-ccchhHHHHHHHHHHH
Confidence 344444444444444444444443 2 2334444444444443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.51 Score=38.06 Aligned_cols=56 Identities=16% Similarity=0.068 Sum_probs=34.7
Q ss_pred HHcCCHHHHHHHHHhC----CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 038395 256 SRAGQVEEAYKLVMDM----KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311 (480)
Q Consensus 256 ~~~g~~~~A~~~~~~m----~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~ 311 (480)
.+.|++++|.+.|+.+ |..| ....--.|+.++.+.+++++|...+++.+++.|.++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 4566666666666666 2222 233444566777777777777777777777777543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.84 Score=43.20 Aligned_cols=95 Identities=11% Similarity=0.004 Sum_probs=76.0
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 038395 246 EHYGCMVNLLSRAGQVEEAYKLVMDM-KI-EPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAA 323 (480)
Q Consensus 246 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (480)
..++.|.-.|.+.+++.+|++.-+.. .. ++|+...--=..+|...|+++.|...|+++++..|.|..+-..|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 35667778889999999999887776 33 34676666677899999999999999999999999998777888877777
Q ss_pred cCChhH-HHHHHHHHHhC
Q 038395 324 IGNWDG-VARVRTLMKEK 340 (480)
Q Consensus 324 ~g~~~~-a~~~~~~m~~~ 340 (480)
..+..+ ..++|..|..+
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 666654 47888888654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.55 E-value=3.6 Score=37.48 Aligned_cols=144 Identities=15% Similarity=0.119 Sum_probs=89.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCC
Q 038395 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQ 260 (480)
Q Consensus 182 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~ 260 (480)
......|+..+|..+|......... +...-..+..++...|+++.|..++..+-.+. .-+ .....+-+..+.+...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~--~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQA--QDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccc--hhhHHHHHHHHHHHHHHHhc
Confidence 3455678888888888877764322 23455567777888888888888888765321 111 1112233455556555
Q ss_pred HHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCchhHHHHHHHHHHcCChh
Q 038395 261 VEEAYKLVMDMKIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQN--LANSGTYVLLSNIYAAIGNWD 328 (480)
Q Consensus 261 ~~~A~~~~~~m~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 328 (480)
..+..++-.+.--.| |...--.+...+...|+.+.|.+.+-.+++.+ -.+...-..|+..+.-.|.-+
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 555555555553345 45555667777777888888877766666643 345566667777777766443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.17 E-value=2.5 Score=34.22 Aligned_cols=85 Identities=9% Similarity=0.056 Sum_probs=36.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHc
Q 038395 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRA 258 (480)
Q Consensus 179 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 258 (480)
.+|..+.+.+.......+++.+...+. .+....+.++..|++.+ .++...++.. .++......++..+.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHHHc
Confidence 344444444555555555555544432 33444445555554332 2222222221 11222233344445555
Q ss_pred CCHHHHHHHHHhCC
Q 038395 259 GQVEEAYKLVMDMK 272 (480)
Q Consensus 259 g~~~~A~~~~~~m~ 272 (480)
+.++++.-++.+++
T Consensus 83 ~l~~~~~~l~~k~~ 96 (140)
T smart00299 83 KLYEEAVELYKKDG 96 (140)
T ss_pred CcHHHHHHHHHhhc
Confidence 55555555555543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=4.8 Score=37.17 Aligned_cols=241 Identities=11% Similarity=0.059 Sum_probs=159.3
Q ss_pred HHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCh----HHHHHHHHHHHHCCCCCC
Q 038395 31 KLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA----NEALVLFRRMLAEKVEPN 106 (480)
Q Consensus 31 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~pd 106 (480)
.++..+..+|.......+.++.+.|..+-...+..-+..+|...-...+.++.+.|+. ++++..+..+... .||
T Consensus 27 ~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d 104 (280)
T PRK09687 27 ELFRLLDDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKS 104 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCC
Confidence 3444556778888888888888888755544444545567777777788888888874 4678888777443 567
Q ss_pred HHHHHHHHHHHHccCCh-----HHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHH
Q 038395 107 EVTAVAVLSACGQIGAL-----ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181 (480)
Q Consensus 107 ~~t~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li 181 (480)
...-...+.+++..+.. ..+...+.... ..++..+-...+.++++.|+.+....+...+.++|...-..-+
T Consensus 105 ~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~----~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~ 180 (280)
T PRK09687 105 ACVRASAINATGHRCKKNPLYSPKIVEQSQITA----FDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHHHHhcccccccccchHHHHHHHHHh----hCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 77777777777665432 22333333332 3346677778888888888865555555555566666666666
Q ss_pred HHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCC
Q 038395 182 VGYAMHG-FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260 (480)
Q Consensus 182 ~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 260 (480)
.++.+.+ +..++...+..+.. .+|...-...+.++.+.++. .+...+-...+. ++ .....+.+++..|.
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKK----GT--VGDLIIEAAGELGD 250 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCC
Confidence 6666653 24567777777764 45777777888889888885 455555544432 22 34567888999999
Q ss_pred HHHHHHHHHhC-CCCCCHhHHHHHHHHHH
Q 038395 261 VEEAYKLVMDM-KIEPDSVLWGTLLGACR 288 (480)
Q Consensus 261 ~~~A~~~~~~m-~~~p~~~~~~~li~a~~ 288 (480)
. +|...+..+ .-.||..+-...+.+|.
T Consensus 251 ~-~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 251 K-TLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred H-hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 6 677777777 44678777777776664
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.10 E-value=4.8 Score=37.15 Aligned_cols=241 Identities=12% Similarity=-0.000 Sum_probs=151.9
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh----HHHHHHHHHHHHh
Q 038395 61 RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL----ESGRWIHSYIENS 136 (480)
Q Consensus 61 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~----~~a~~~~~~~~~~ 136 (480)
..+++.+..+|....-..+.++...|. +++...+..+.. .+|...-...+.++++.|+. +.+...+..+..
T Consensus 26 ~~L~~~L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~- 100 (280)
T PRK09687 26 DELFRLLDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL- 100 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh-
Confidence 345555567788777778888877775 445555555544 34666666777778888763 456666666532
Q ss_pred CCCCCchhHHHHHHHHHHhCCC-----HHHHHHHHHh-cCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 038395 137 RNIKVNVQVGTALINMYSKCGS-----LKDARLVFDR-VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI 210 (480)
Q Consensus 137 ~~~~~~~~~~~~li~~y~~~g~-----~~~A~~~f~~-m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 210 (480)
-.++..+-...+.+++..+. ...+...+.. +.+++..+-...+.++.+.|+ .+|+..+-.+.. .+|..
T Consensus 101 --~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~ 174 (280)
T PRK09687 101 --EDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGD 174 (280)
T ss_pred --cCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHH
Confidence 24666677677777766543 1234444433 345566666677788888776 467777777765 34555
Q ss_pred HHHHHHHHHHccC-CHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh
Q 038395 211 TFIGLLSACAHAG-LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRL 289 (480)
Q Consensus 211 t~~~ll~a~~~~g-~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~ 289 (480)
.-...+.++.+.+ ..+.+...+..+.. .++..+-...+.++++.|+..-.-.+++.+. .++ .....+.++..
T Consensus 175 VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~-~~~--~~~~a~~ALg~ 247 (280)
T PRK09687 175 VRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKDKRVLSVLIKELK-KGT--VGDLIIEAAGE 247 (280)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCChhHHHHHHHHHc-CCc--hHHHHHHHHHh
Confidence 5555566666653 24466666666663 4677778888899999998544444444444 233 34467788888
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 038395 290 HGNIALGEKIAEYLISQNLANSGTYVLLSNIY 321 (480)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 321 (480)
.|+. +|...+..+.+..|+. ..-...+.++
T Consensus 248 ig~~-~a~p~L~~l~~~~~d~-~v~~~a~~a~ 277 (280)
T PRK09687 248 LGDK-TLLPVLDTLLYKFDDN-EIITKAIDKL 277 (280)
T ss_pred cCCH-hHHHHHHHHHhhCCCh-hHHHHHHHHH
Confidence 8885 6888888888877743 3433334333
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.00 E-value=1.3 Score=42.97 Aligned_cols=117 Identities=10% Similarity=0.060 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHH---------cCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcC
Q 038395 224 LVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSR---------AGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHG 291 (480)
Q Consensus 224 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~ 291 (480)
..+.|..+|.+......+.|+ ...|..+...+.. .....+|.++.++. .+.| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 345667777776643345555 3334333332221 22344556666555 3333 5666666666677777
Q ss_pred ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 292 NIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
+++.|...|+++..++|+.+.+|........-.|+.++|.+.+++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 7888888888888888888888888888888888888888888775443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.77 E-value=5.4 Score=39.92 Aligned_cols=161 Identities=11% Similarity=0.063 Sum_probs=108.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHHc----cCCHHHHHHHHHHhhhhcCCcCCcc
Q 038395 177 WNSMIVGYAMHGFGKDALQLFNEMCRIR-LKPSD-----ITFIGLLSACAH----AGLVNEGRRFFNTMKDEYAIEPKVE 246 (480)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~-----~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~ 246 (480)
...+++...=.|+-+.+++++.+-.+.+ +.-.. .+|..++..++. ....+.+.+++..+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3445566666789999999888866532 32211 123333333332 46788899999999965 47766
Q ss_pred HHHHH-HHHHHHcCCHHHHHHHHHhCC-CC-----CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHH-HHH
Q 038395 247 HYGCM-VNLLSRAGQVEEAYKLVMDMK-IE-----PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV-LLS 318 (480)
Q Consensus 247 ~~~~l-i~~~~~~g~~~~A~~~~~~m~-~~-----p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~l~ 318 (480)
.|... ...+...|++++|.+.|++.- .+ .....+--+.-.+....++++|...+..+.+...-....|. ..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 65444 356677899999999999761 11 12333445666778889999999999999997665444554 455
Q ss_pred HHHHHcCCh-------hHHHHHHHHHHhC
Q 038395 319 NIYAAIGNW-------DGVARVRTLMKEK 340 (480)
Q Consensus 319 ~~~~~~g~~-------~~a~~~~~~m~~~ 340 (480)
.+|...|+. ++|.+++++....
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 566778888 8888888877543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.50 E-value=4.6 Score=34.96 Aligned_cols=201 Identities=13% Similarity=0.044 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC--C-hHHHHHHHH-
Q 038395 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK--D-VVVWNSMIV- 182 (480)
Q Consensus 107 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--~-~~~~~~li~- 182 (480)
...+......+...+.+..+...+...............+..+...+...+++..+.+.+...... + .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344444555555555555555555544431012333444555555555666666666666655541 1 122222223
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcC
Q 038395 183 GYAMHGFGKDALQLFNEMCRIRL--KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAG 259 (480)
Q Consensus 183 ~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g 259 (480)
.+...|+.+.|...|.+...... ......+......+...++.+.+...+...... ... ....+..+...+...+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcc
Confidence 67778888888888887744211 112333444444466778888888888887742 122 3566777777888888
Q ss_pred CHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 038395 260 QVEEAYKLVMDM-KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309 (480)
Q Consensus 260 ~~~~A~~~~~~m-~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~ 309 (480)
+++.|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 888888888777 44444 444555555555667788888888888887776
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.78 Score=36.11 Aligned_cols=102 Identities=18% Similarity=0.054 Sum_probs=65.0
Q ss_pred HHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC--HhHHHHHHHHHHhcC
Q 038395 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM----KIEPD--SVLWGTLLGACRLHG 291 (480)
Q Consensus 218 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~li~a~~~~~ 291 (480)
+.+..|+++.|++.|.+... -.+-....||.-..+|.-.|+.++|++=+++. +-+.. -..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 45667888888888877763 22334677888888888888888887777665 21111 122333334577788
Q ss_pred ChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 038395 292 NIALGEKIAEYLISQNLANSGTYVLLSNIY 321 (480)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 321 (480)
+.+.|..-|+.+-+++.+-..-....++=|
T Consensus 130 ~dd~AR~DFe~AA~LGS~FAr~QLV~lNPY 159 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSKFAREQLVELNPY 159 (175)
T ss_pred chHHHHHhHHHHHHhCCHHHHHHHHhcChH
Confidence 888888888888887765443333344434
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.46 E-value=2.4 Score=39.16 Aligned_cols=48 Identities=8% Similarity=-0.057 Sum_probs=20.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 038395 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 188 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 236 (480)
|+..+|-..++++.+. .+.|...+...=.+|...|+.+.-...++++.
T Consensus 117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIi 164 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKII 164 (491)
T ss_pred ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhc
Confidence 3444444444444432 23333444444444444444444444444444
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.18 Score=29.23 Aligned_cols=32 Identities=9% Similarity=-0.063 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 038395 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309 (480)
Q Consensus 278 ~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~ 309 (480)
.+|..+..++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777777888888888888888888887775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.34 E-value=1.7 Score=40.47 Aligned_cols=122 Identities=11% Similarity=0.078 Sum_probs=62.9
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhcCC--c--CCccHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-----Hh
Q 038395 215 LLSACAHAGLVNEGRRFFNTMKDEYAI--E--PKVEHYGCMVNLLSRAGQVEEAYKLVMDM-------KIEPD-----SV 278 (480)
Q Consensus 215 ll~a~~~~g~~~~a~~~~~~m~~~~~~--~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-----~~ 278 (480)
+-.++...+.++++++.|+...+-..- . ....+|..|...|++..++++|.-+..+. ++.-- ..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 444555556666666666655421110 1 12345666666777776666655443332 22110 11
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCc----hhHHHHHHHHHHcCChhHHHHHHHH
Q 038395 279 LWGTLLGACRLHGNIALGEKIAEYLISQN--LANS----GTYVLLSNIYAAIGNWDGVARVRTL 336 (480)
Q Consensus 279 ~~~~li~a~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~ 336 (480)
+...|.-+++..|.+..|.+.-++..++. ..|. .....+.++|...|+.+.|..-++.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 22234456666677666666666665532 1222 2234566677777776666555543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.19 E-value=9.1 Score=38.32 Aligned_cols=175 Identities=16% Similarity=0.156 Sum_probs=113.1
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchh-----HHHHHHHHHHh----CCCHHHH
Q 038395 92 LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ-----VGTALINMYSK----CGSLKDA 162 (480)
Q Consensus 92 ~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~li~~y~~----~g~~~~A 162 (480)
.-+|.-+... +||. +..+++..+=.||-+.|.+.+....+..++..... .|...+..++. ..+.+.|
T Consensus 177 ~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 4455555554 4543 44566666677888888888888776533333221 23333333332 4578889
Q ss_pred HHHHHhcCC--CChHHHHHHH-HHHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 038395 163 RLVFDRVND--KDVVVWNSMI-VGYAMHGFGKDALQLFNEMCRIR---LKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 163 ~~~f~~m~~--~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 236 (480)
.++++.+.+ |+...|.-.- ..+...|+.++|++.|++..... .+.....+--+.-.+.-..++++|...|..+.
T Consensus 253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 999998887 7777765543 45566899999999999765311 12234455566667888899999999999998
Q ss_pred hhcCCcCCccHHHHHHHHHHHcCCH-------HHHHHHHHhC
Q 038395 237 DEYAIEPKVEHYGCMVNLLSRAGQV-------EEAYKLVMDM 271 (480)
Q Consensus 237 ~~~~~~p~~~~~~~li~~~~~~g~~-------~~A~~~~~~m 271 (480)
+...+.+...+|.. ...+...|+. ++|.++|.+.
T Consensus 333 ~~s~WSka~Y~Y~~-a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 333 KESKWSKAFYAYLA-AACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred hccccHHHHHHHHH-HHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 76555544444432 2334556666 8889998887
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=93.14 E-value=1.7 Score=36.03 Aligned_cols=86 Identities=15% Similarity=0.046 Sum_probs=39.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHH
Q 038395 82 YAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161 (480)
Q Consensus 82 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 161 (480)
+-+.|++++|..+|+-+.-.+ .-|..-+..|..++-..+++++|...|...... + ..|+...--....|...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHH
Confidence 344555555555555554422 112333334444444455555555555554433 1 1222233334445555555555
Q ss_pred HHHHHHhcC
Q 038395 162 ARLVFDRVN 170 (480)
Q Consensus 162 A~~~f~~m~ 170 (480)
|+..|....
T Consensus 124 A~~~f~~a~ 132 (165)
T PRK15331 124 ARQCFELVN 132 (165)
T ss_pred HHHHHHHHH
Confidence 555555443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.07 E-value=2.9 Score=39.79 Aligned_cols=130 Identities=11% Similarity=0.005 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH----HHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhh---hcC-CcCCcc
Q 038395 176 VWNSMIVGYAMHGFGKDALQLFNEM----CRIRLKP-SDITFIGLLSACAHAGLVNEGRRFFNTMKD---EYA-IEPKVE 246 (480)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~~-~~p~~~ 246 (480)
.|..|.+.|.-.|+++.|+..-+.- ++-|-+. ....+..+.+++.-.|+++.|.+.|..... +.| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4666666666778888888765432 2223211 224566777788888899999888775431 111 122234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038395 247 HYGCMVNLLSRAGQVEEAYKLVMDM-------K-IEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305 (480)
Q Consensus 247 ~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~ 305 (480)
..-+|...|.-...+++|+.++.+- + .--....+.+|..++...|..+.|....+..++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4556777777777888888877653 1 112456778899999999999998888777666
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.31 Score=28.11 Aligned_cols=33 Identities=21% Similarity=0.087 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038395 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310 (480)
Q Consensus 278 ~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~ 310 (480)
..|..+...+...|++++|.+.+++++++.|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356667777777788888888888777777753
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.02 E-value=4.1 Score=32.96 Aligned_cols=55 Identities=11% Similarity=0.045 Sum_probs=27.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhh
Q 038395 184 YAMHGFGKDALQLFNEMCRIRL--KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238 (480)
Q Consensus 184 ~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 238 (480)
..+.|++++|.+.|+.+...-. +-....-..++.++.+.+++++|...+++..+-
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3445566666666665554311 111233444555555666666666655555543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.89 E-value=3.9 Score=32.42 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 038395 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM 235 (480)
Q Consensus 156 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 235 (480)
||++......+-.+. .+....+.-+..+...|+-++-.++++++.. +-.|++.....+..||.+.|+..++.+++..+
T Consensus 69 C~NlKrVi~C~~~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 69 CGNLKRVIECYAKRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp -S-THHHHHHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hcchHHHHHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 344444443333322 2333445567777888888888888888765 34677788888888999999999998888888
Q ss_pred hhhcCC
Q 038395 236 KDEYAI 241 (480)
Q Consensus 236 ~~~~~~ 241 (480)
.+. |+
T Consensus 147 Cek-G~ 151 (161)
T PF09205_consen 147 CEK-GL 151 (161)
T ss_dssp HHT-T-
T ss_pred HHh-ch
Confidence 754 54
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.66 Score=42.22 Aligned_cols=62 Identities=19% Similarity=0.132 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 038395 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 278 ~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
.++..++.++...|+.+.+...+++++..+|-+...|..++.+|.+.|+...|...++.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34566777888888899999999999999998888999999999999999999999888865
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.83 E-value=6.7 Score=38.31 Aligned_cols=157 Identities=10% Similarity=0.020 Sum_probs=103.5
Q ss_pred HHH--HHHHHHHHhcC-----ChHHHHHHHHHHHH-cCCCCCHH-HHHHHHHHHH---------ccCCHHHHHHHHHHhh
Q 038395 175 VVW--NSMIVGYAMHG-----FGKDALQLFNEMCR-IRLKPSDI-TFIGLLSACA---------HAGLVNEGRRFFNTMK 236 (480)
Q Consensus 175 ~~~--~~li~~~~~~g-----~~~~A~~l~~~m~~-~g~~p~~~-t~~~ll~a~~---------~~g~~~~a~~~~~~m~ 236 (480)
..| ..++.+....- ..+.|+.+|.+... +.+.|+.. .|..+..++. ......+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 567 66666655422 35688889999872 23566643 3333322221 1234455666666655
Q ss_pred hhcCCc-CCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchh
Q 038395 237 DEYAIE-PKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313 (480)
Q Consensus 237 ~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 313 (480)
+ +. -|......+..++.-.|+++.|..+|++. .+.|| ..+|....-.+.-.|+.++|.+.+++.+++.|....+
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 3 23 34666666777778888899999999998 66777 5667666677788999999999999999999975433
Q ss_pred --HHHHHHHHHHcCChhHHHHHHH
Q 038395 314 --YVLLSNIYAAIGNWDGVARVRT 335 (480)
Q Consensus 314 --~~~l~~~~~~~g~~~~a~~~~~ 335 (480)
....++.|... ..++|.+++-
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHh
Confidence 33344466655 4567776653
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.51 E-value=1.1 Score=40.82 Aligned_cols=75 Identities=13% Similarity=0.221 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 038395 144 QVGTALINMYSKCGSLKDARLVFDRVNDK---DVVVWNSMIVGYAMHGFGKDALQLFNEMCR-----IRLKPSDITFIGL 215 (480)
Q Consensus 144 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~l 215 (480)
.++..++..+..+|+.+.+.+.++++... |...|..++.+|.+.|+...|+..|+.+.. .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 36788899999999999999999888753 778999999999999999999999998765 5788877766655
Q ss_pred HHH
Q 038395 216 LSA 218 (480)
Q Consensus 216 l~a 218 (480)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 554
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.49 E-value=27 Score=41.17 Aligned_cols=308 Identities=12% Similarity=0.092 Sum_probs=172.1
Q ss_pred HHHHHHhcCChHHHHHHHhhC----CCCCh--hHHHHHHHHHHhcCCHHHHHHHHh-hcCCCCHHHHHHHHHHHHHcCCh
Q 038395 16 LVDLYARGGDVLSAEKLFATM----PQRSL--VSLTTMLTCYAKQGEVAAARVLFD-DMEEKDVVCWNVMIDGYAQHGLA 88 (480)
Q Consensus 16 ll~~~~~~g~~~~A~~~~~~m----~~~~~--~~~~~li~~~~~~g~~~~A~~~f~-~~~~~~~~~~~~li~~~~~~g~~ 88 (480)
|..+-.+|+.+..|...+++- .+.+. .-+-.+...|+.-+++|...-+.. +..+|+. ..-|.-....|++
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGNW 1465 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhccH
Confidence 344556788888888888883 22222 224444447888888877777666 3444433 2345556778999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHH-HHHHHhCCCHHHHHHHHH
Q 038395 89 NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTAL-INMYSKCGSLKDARLVFD 167 (480)
Q Consensus 89 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-i~~y~~~g~~~~A~~~f~ 167 (480)
+.|...|+++.+.+ ++...+++.++......+.++...-..+.... ...+...-++++ +.+--+.++++.......
T Consensus 1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~--~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLII--NRSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhh--ccCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 99999999998863 33366788888877777887777665554443 223333333332 334456677777666655
Q ss_pred hcCCCChHHHHHH--HHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH----------H
Q 038395 168 RVNDKDVVVWNSM--IVGYAMHG--FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF----------N 233 (480)
Q Consensus 168 ~m~~~~~~~~~~l--i~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~----------~ 233 (480)
.++...|.+. ...+.+.. +.-.-.++.+.+++.-+.| +.+|+..|.+..+.++. +
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 5566666654 22222222 2222223444443321111 11222222111111111 1
Q ss_pred HhhhhcCCcCCcc------HHHHHH---HHHHHcCCHHHHH-HHHHhCCCCC-----CHhHHHHHHHHHHhcCChhHHHH
Q 038395 234 TMKDEYAIEPKVE------HYGCMV---NLLSRAGQVEEAY-KLVMDMKIEP-----DSVLWGTLLGACRLHGNIALGEK 298 (480)
Q Consensus 234 ~m~~~~~~~p~~~------~~~~li---~~~~~~g~~~~A~-~~~~~m~~~p-----~~~~~~~li~a~~~~~~~~~a~~ 298 (480)
......+..++.. .|..-+ +.+.+....--|. +.+.....+| -..+|-...+.++..|.++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 1111112233221 122222 2222211111111 1111111122 25689999999999999999999
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 038395 299 IAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 342 (480)
..-.+.+..++ ..+.-.+......|+-..|..++++-.+...
T Consensus 1692 all~A~e~r~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1692 ALLNAKESRLP--EIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHhhhhcccc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 88888877743 5788888999999999999999999887654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.12 E-value=17 Score=37.83 Aligned_cols=150 Identities=12% Similarity=0.057 Sum_probs=94.3
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--C---ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHH
Q 038395 17 VDLYARGGDVLSAEKLFATMPQ--R---SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEA 91 (480)
Q Consensus 17 l~~~~~~g~~~~A~~~~~~m~~--~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 91 (480)
++-+.+.+.+++|+.+-+.-.. + -...+...|..+.-.|++++|-...-.|...+..-|---+..++..++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 3445667788899888877653 1 2356888999999999999999998888888888888888877777766544
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH------------------HHHHHHHhCCCCCchhHHHHHHHHH
Q 038395 92 LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW------------------IHSYIENSRNIKVNVQVGTALINMY 153 (480)
Q Consensus 92 ~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~------------------~~~~~~~~~~~~~~~~~~~~li~~y 153 (480)
..+. .....+.+...|..+|-.+.. .+...-.+ +..+..+ ...+..+-..|+..|
T Consensus 443 a~~l---Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q---~Se~~~L~e~La~LY 515 (846)
T KOG2066|consen 443 APYL---PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQ---NSESTALLEVLAHLY 515 (846)
T ss_pred hccC---CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHh---hccchhHHHHHHHHH
Confidence 3321 111111234445555555444 11111111 1111111 112233445588999
Q ss_pred HhCCCHHHHHHHHHhcCCCC
Q 038395 154 SKCGSLKDARLVFDRVNDKD 173 (480)
Q Consensus 154 ~~~g~~~~A~~~f~~m~~~~ 173 (480)
...+++++|...+-...+++
T Consensus 516 l~d~~Y~~Al~~ylklk~~~ 535 (846)
T KOG2066|consen 516 LYDNKYEKALPIYLKLQDKD 535 (846)
T ss_pred HHccChHHHHHHHHhccChH
Confidence 99999999999988887653
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.12 E-value=2.6 Score=35.11 Aligned_cols=124 Identities=14% Similarity=0.081 Sum_probs=58.7
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchh-HHHHH--HHHHHhCCC
Q 038395 83 AQHGLANEALVLFRRMLAEKVEPNEV-TAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ-VGTAL--INMYSKCGS 158 (480)
Q Consensus 83 ~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l--i~~y~~~g~ 158 (480)
++.+..++|+.-|.++.+.|...=+. .........++.|+...|...|+++-+. .-.|-.. -..-| .-.+...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhcccc
Confidence 45555666666666666554332111 1111222344556666666666666543 2112111 00011 112345566
Q ss_pred HHHHHHHHHhcCCC-C---hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038395 159 LKDARLVFDRVNDK-D---VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP 207 (480)
Q Consensus 159 ~~~A~~~f~~m~~~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 207 (480)
+++...-.+-+..+ + ...-.+|.-+-.+.|++.+|...|..+......|
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 66666555555432 1 1233345455556667777777776665543344
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.09 E-value=7.6 Score=36.10 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--cC----ChHHHHHHHHHHHHh
Q 038395 89 NEALVLFRRMLAEKVEPNEVTAVAVLSACGQ--IG----ALESGRWIHSYIENS 136 (480)
Q Consensus 89 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~ 136 (480)
++.+.+++.|.+.|++-+..+|.+....... .. ....+..+|+.|++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 4556678888888888888777664444333 11 235567777777765
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.96 E-value=6.2 Score=32.59 Aligned_cols=88 Identities=13% Similarity=0.156 Sum_probs=50.5
Q ss_pred HHHccCCHHHHHHHHHHhhhhcCCcCCcc-HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCChhH
Q 038395 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVE-HYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDSVLWGTLLGACRLHGNIAL 295 (480)
Q Consensus 218 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~a~~~~~~~~~ 295 (480)
.-...++.+++..++..+. -+.|... .-..-...+.+.|++.+|.++|+++ .-.|....-..|+..|....+-..
T Consensus 19 ~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 3345667788888777776 3455532 2222334456788888888888887 223444444556655555444333
Q ss_pred HHHHHHHHHHcCC
Q 038395 296 GEKIAEYLISQNL 308 (480)
Q Consensus 296 a~~~~~~~~~~~~ 308 (480)
=....+++.+.++
T Consensus 96 Wr~~A~evle~~~ 108 (160)
T PF09613_consen 96 WRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHhcCC
Confidence 3444555555554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.74 E-value=6.1 Score=38.80 Aligned_cols=149 Identities=13% Similarity=0.066 Sum_probs=79.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHH
Q 038395 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAY 265 (480)
Q Consensus 186 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 265 (480)
+..++..-+++-++..+ +.||-.+.-.++ +--....+.++.+++++..+. | ...+..-- .....|. ..
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s~-~~~~~g~---~~ 247 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKSQ-FLQHHGH---FW 247 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchhh-hhhcccc---hh
Confidence 44455555555555544 456554433333 223345577888888776642 1 00000000 0000111 11
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 038395 266 KLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA--NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343 (480)
Q Consensus 266 ~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 343 (480)
+.+..-..+|-..+=..|...+.+.|+.++|.+.++++.+..|. +......|++.+...+.+.++..++.+-.+-..+
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 11111111222333345667777888888888888888876664 4456778888888888888888888876554444
Q ss_pred cCC
Q 038395 344 KEP 346 (480)
Q Consensus 344 ~~~ 346 (480)
+..
T Consensus 328 kSA 330 (539)
T PF04184_consen 328 KSA 330 (539)
T ss_pred chH
Confidence 433
|
The molecular function of this protein is uncertain. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.46 Score=28.11 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 038395 74 CWNVMIDGYAQHGLANEALVLFRRML 99 (480)
Q Consensus 74 ~~~~li~~~~~~g~~~~A~~~~~~m~ 99 (480)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677777777777777777777744
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.34 E-value=16 Score=36.05 Aligned_cols=101 Identities=13% Similarity=0.137 Sum_probs=64.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCC-C-CCC--HhHHHHHHHH
Q 038395 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK-I-EPD--SVLWGTLLGA 286 (480)
Q Consensus 211 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~--~~~~~~li~a 286 (480)
+=..+..++-+.|+.++|.+.+.+|.++............|+..|...+.+.++..++.+.. + -|. ...|+..+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 33446666778899999999999888654322234466778888888999999988888773 1 233 3445554433
Q ss_pred HHhcCCh---------------hHHHHHHHHHHHcCCCCc
Q 038395 287 CRLHGNI---------------ALGEKIAEYLISQNLANS 311 (480)
Q Consensus 287 ~~~~~~~---------------~~a~~~~~~~~~~~~~~~ 311 (480)
.+..++. ..|.++..++.+.+|.-+
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 3333321 235567777777776543
|
The molecular function of this protein is uncertain. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.03 E-value=7.5 Score=36.49 Aligned_cols=53 Identities=11% Similarity=0.186 Sum_probs=24.8
Q ss_pred HHHccCCHHHHHHHHHHhhh---hcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHh
Q 038395 218 ACAHAGLVNEGRRFFNTMKD---EYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMD 270 (480)
Q Consensus 218 a~~~~g~~~~a~~~~~~m~~---~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 270 (480)
++...|.+-.|.+.-++..+ .+|-.|. ....-++.+.|...|+.+.|+.-|+.
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 44445555555444444332 1121111 22334555666666666666555544
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.97 E-value=15 Score=35.03 Aligned_cols=150 Identities=9% Similarity=-0.085 Sum_probs=76.8
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHhhhh-cCCcCCccH
Q 038395 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP---SDITFIGLLSACAHAGLVNEGRRFFNTMKDE-YAIEPKVEH 247 (480)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~ 247 (480)
....+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+..+|...++...+. ..-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 355678888888888999999988888887643211 2233333344556678888888888777651 111111111
Q ss_pred HHHHHHHHHHcCCHHHHHHH-HHhCCCCCCHhHHHHHHHHHHh------cCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 038395 248 YGCMVNLLSRAGQVEEAYKL-VMDMKIEPDSVLWGTLLGACRL------HGNIALGEKIAEYLISQNLANSGTYVLLSNI 320 (480)
Q Consensus 248 ~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~li~a~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 320 (480)
...+...+.. ..+..... ........-...+..+..-+.. .++.+.+...+..+.+..|....+|..+...
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 0000000001222222222223 3677888888888888888776676666655
Q ss_pred HHH
Q 038395 321 YAA 323 (480)
Q Consensus 321 ~~~ 323 (480)
+.+
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 533
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.80 E-value=7.6 Score=35.00 Aligned_cols=101 Identities=15% Similarity=0.102 Sum_probs=60.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhcCC-cCCccHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-HhHHHHHH
Q 038395 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAI-EPKVEHYGCMVNLLSRAGQVEEAYKLVMDM----KIEPD-SVLWGTLL 284 (480)
Q Consensus 211 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-~~~~~~li 284 (480)
.|+.-+.. ...|++..|.+-|....+.|.- .-....+-.|...+...|++++|..+|..+ |-.|- +...--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45555543 3456677777777776654311 011233445667777777777777776665 32332 35555666
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCch
Q 038395 285 GACRLHGNIALGEKIAEYLISQNLANSG 312 (480)
Q Consensus 285 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 312 (480)
......|+.+.|...++++.+.-|..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 6677777777777777777777776543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.61 E-value=1.1 Score=27.81 Aligned_cols=28 Identities=36% Similarity=0.570 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038395 74 CWNVMIDGYAQHGLANEALVLFRRMLAE 101 (480)
Q Consensus 74 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 101 (480)
+|..+...|.+.|++++|.++|++.++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5666777777777777777777777774
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.45 E-value=3.3 Score=38.30 Aligned_cols=115 Identities=11% Similarity=0.013 Sum_probs=89.0
Q ss_pred ccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHhHH----HHHHHHHHhcCChh
Q 038395 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KI-EPDSVLW----GTLLGACRLHGNIA 294 (480)
Q Consensus 221 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~----~~li~a~~~~~~~~ 294 (480)
..|...+|-..++++.+++ +.|...+.-.=+++.-.|+.+.-...++++ +. .||...| ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 4577888888888888653 566777777778899999999888888888 43 5665333 23344556789999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 038395 295 LGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337 (480)
Q Consensus 295 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 337 (480)
+|++..++..++++.+.-+..++...+--.|+..++.++..+-
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 9999999999999998877788888888888888888776543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.32 E-value=15 Score=34.12 Aligned_cols=135 Identities=10% Similarity=0.184 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--c----CCHHHHHHHHHHhhhhcCC--cCCccHHHHHHHHHHHcCCH
Q 038395 190 GKDALQLFNEMCRIRLKPSDITFIGLLSACAH--A----GLVNEGRRFFNTMKDEYAI--EPKVEHYGCMVNLLSRAGQV 261 (480)
Q Consensus 190 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--~----g~~~~a~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~g~~ 261 (480)
.++.+.+++.|.+.|++-+..+|.+....... . ....+|..+|+.|++.+.+ .++...+..|+.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566788899999998888887764433332 2 2356788999999987665 3344555555443 33333
Q ss_pred H----HHHHHHHhC---CCCC-C-HhHHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCC
Q 038395 262 E----EAYKLVMDM---KIEP-D-SVLWGTLLGACRLHGN--IALGEKIAEYLISQNLANSGTYVLLSNIYAAIGN 326 (480)
Q Consensus 262 ~----~A~~~~~~m---~~~p-~-~~~~~~li~a~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 326 (480)
+ .+..+|+.+ ++.+ | ......++..+-...+ +..+..+++.+.+.+..-...+...+...+-.++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~ 231 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLED 231 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCC
Confidence 3 333444443 4333 2 2333333333322222 3356666666666554432333333334443333
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.09 E-value=0.75 Score=27.16 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 038395 177 WNSMIVGYAMHGFGKDALQLFNEM 200 (480)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~l~~~m 200 (480)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666666666666666666663
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.03 E-value=5.6 Score=33.82 Aligned_cols=64 Identities=17% Similarity=0.139 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 038395 73 VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNE--VTAVAVLSACGQIGALESGRWIHSYIENS 136 (480)
Q Consensus 73 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 136 (480)
..+..+...|.+.|+.++|++.|.++++....|.. ..+..++..+.-.+++..+......+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46778888888888888888888888776444433 35667777788888888888777776654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.93 E-value=1.6 Score=37.23 Aligned_cols=88 Identities=15% Similarity=0.086 Sum_probs=67.7
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC------CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCC
Q 038395 254 LLSRAGQVEEAYKLVMDM-KIEP------DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGN 326 (480)
Q Consensus 254 ~~~~~g~~~~A~~~~~~m-~~~p------~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 326 (480)
-+.+.|++++|..-|... ..-| ....|..-..++.+.+..+.|..-..++++++|....+..--+.+|.+...
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 355677888887777665 1112 234555556778888999999999999999999877777777889999999
Q ss_pred hhHHHHHHHHHHhCC
Q 038395 327 WDGVARVRTLMKEKG 341 (480)
Q Consensus 327 ~~~a~~~~~~m~~~~ 341 (480)
+++|+.-++.+.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999887764
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.69 E-value=2.7 Score=31.51 Aligned_cols=62 Identities=21% Similarity=0.281 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHH
Q 038395 190 GKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253 (480)
Q Consensus 190 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 253 (480)
.-+..+-++.+....+.|+.....+.|.||.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 335666677777778899999999999999999999999999999986544 33447777765
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.66 E-value=15 Score=32.95 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=46.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCch---hHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 282 TLLGACRLHGNIALGEKIAEYLISQNLANSG---TYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 282 ~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
.+..-|.+.|.+..|..-++++++.-|+... .+..+..+|...|-.++|.+.-+-+...
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 3556788999999999999999997665443 5567888999999999998887666543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.55 E-value=15 Score=32.89 Aligned_cols=165 Identities=14% Similarity=0.097 Sum_probs=103.6
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCCC------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCH--HHHH
Q 038395 143 VQVGTALINMYSKCGSLKDARLVFDRVNDK------DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR-LKPSD--ITFI 213 (480)
Q Consensus 143 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~--~t~~ 213 (480)
...|+.-+ .-.+.|++++|.+.|+.+..+ ...+--.++-++-+.+++++|+..+++....- -.||. ..|.
T Consensus 35 ~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 34444433 445679999999999999763 23455566778889999999999999987743 33332 3444
Q ss_pred HHHHHHHcc----CCHHH---HHHHHHHhhhhcCCcCCcc------H------------HHHHHHHHHHcCCHHHHHHHH
Q 038395 214 GLLSACAHA----GLVNE---GRRFFNTMKDEYAIEPKVE------H------------YGCMVNLLSRAGQVEEAYKLV 268 (480)
Q Consensus 214 ~ll~a~~~~----g~~~~---a~~~~~~m~~~~~~~p~~~------~------------~~~li~~~~~~g~~~~A~~~~ 268 (480)
..++-+... .+... |..-|+.+..+ -||.. . =..+..-|.+.|.+..|..-+
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r---yPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQR---YPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHH---CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 444433222 23333 44445555544 34432 1 122345677888888888888
Q ss_pred HhC-CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 038395 269 MDM-KIEPD----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311 (480)
Q Consensus 269 ~~m-~~~p~----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~ 311 (480)
++| .--|+ ....-.+..+|...|-.++|....+-+...-|+++
T Consensus 191 ~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 191 EEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 877 11222 34555677889999999999888776666666553
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.48 E-value=25 Score=35.40 Aligned_cols=181 Identities=14% Similarity=0.127 Sum_probs=126.1
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHH
Q 038395 142 NVQVGTALINMYSKCGSLKDARLVFDRVNDK---DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL--KPSDITFIGLL 216 (480)
Q Consensus 142 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll 216 (480)
+..+|...++.-.+.|+.+.+.-+|++..-| =...|--.+.-....|+.+-|..++....+--+ .|....+.+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 5667888888899999999999999998765 224565566555566988888888776655332 33333333333
Q ss_pred HHHHccCCHHHHHHHHHHhhhhcCCcCCc-cHHHHHHHHHHHcCCHHHHH---HHHHhC-CCCCCHhHHHHHHH-----H
Q 038395 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKV-EHYGCMVNLLSRAGQVEEAY---KLVMDM-KIEPDSVLWGTLLG-----A 286 (480)
Q Consensus 217 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~li~-----a 286 (480)
+-..|+.+.|..+++.+..++ |+. ..-..-+....+.|..+.+. +++... +.+-+..+...+.- -
T Consensus 376 --~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred --HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 456789999999999999753 653 33333455667888888888 555444 22233333333332 2
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCh
Q 038395 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW 327 (480)
Q Consensus 287 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 327 (480)
+...++.+.|..++.++.+..|++...|..+++.....+..
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 34568899999999999999999998999999888777643
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.47 E-value=23 Score=34.92 Aligned_cols=97 Identities=11% Similarity=0.143 Sum_probs=44.4
Q ss_pred CCCHHHHH-HHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHH---HHcCCHHHHHHHHHhC--CCCCCHhH
Q 038395 206 KPSDITFI-GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLL---SRAGQVEEAYKLVMDM--KIEPDSVL 279 (480)
Q Consensus 206 ~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~m--~~~p~~~~ 279 (480)
.|+..|+. .++.-+-..|-..+|...+..+.. -.+|+...|..+|+.= ..+| +..+..+++.| .+..|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHH
Confidence 34444432 344444455555555555555542 2233444444444321 1222 44455555554 11145555
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 038395 280 WGTLLGACRLHGNIALGEKIAEYLIS 305 (480)
Q Consensus 280 ~~~li~a~~~~~~~~~a~~~~~~~~~ 305 (480)
|...+.--..+|..+.+-.++.++.+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 55555544555555555554444443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.41 E-value=4.6 Score=40.39 Aligned_cols=96 Identities=19% Similarity=0.079 Sum_probs=49.4
Q ss_pred hcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038395 22 RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101 (480)
Q Consensus 22 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 101 (480)
-.|+++.|-.++-.++++ .-+.++..+.+.|-.++|+++-- .||.. .....+.|+++.|.++..+.
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s~---D~d~r-----Felal~lgrl~iA~~la~e~--- 663 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELST---DPDQR-----FELALKLGRLDIAFDLAVEA--- 663 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcCC---Chhhh-----hhhhhhcCcHHHHHHHHHhh---
Confidence 356777777776666632 33455566666666666655421 11111 11223455555555554332
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 038395 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134 (480)
Q Consensus 102 g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 134 (480)
-+..-|..|..+..+.+++..|.+.+....
T Consensus 664 ---~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 664 ---NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred ---cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 133445555565556666666555555443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.08 E-value=27 Score=35.20 Aligned_cols=300 Identities=12% Similarity=0.102 Sum_probs=183.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038395 40 SLVSLTTMLTCYAKQGEVAAARVLFDDMEE--KDVV-CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA 116 (480)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 116 (480)
+...|+.+|.---...+++.+..+++.+.. |-.. -|-.....=.+.|..+.+.++|++-++. ++.....|...+.-
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAF 122 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 456788888766555666777778877764 5443 4666666667889999999999998874 66677777766665
Q ss_pred H-HccCChHHHHHHHHHHHHhCCCCC-chhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHh---c----
Q 038395 117 C-GQIGALESGRWIHSYIENSRNIKV-NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM---H---- 187 (480)
Q Consensus 117 ~-~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~---~---- 187 (480)
+ ...|+.+..+..|+......|..- +...|...+..-..++++.....+|+++.+-....++..-.-|.+ .
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~ 202 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEK 202 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChh
Confidence 4 455678888888988887544432 455677777777888999999999999887555555555444433 2
Q ss_pred --CChHHHHHHHHHHHHc---C-CCCCHHHHHHHHHHHH-ccCCHHH------------------------HHHHHHHhh
Q 038395 188 --GFGKDALQLFNEMCRI---R-LKPSDITFIGLLSACA-HAGLVNE------------------------GRRFFNTMK 236 (480)
Q Consensus 188 --g~~~~A~~l~~~m~~~---g-~~p~~~t~~~ll~a~~-~~g~~~~------------------------a~~~~~~m~ 236 (480)
-..+++.++-...... + ..+.......-+.-.. ..+..++ ....|+.-.
T Consensus 203 ~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~I 282 (577)
T KOG1258|consen 203 ILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGI 282 (577)
T ss_pred hhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhc
Confidence 2344555544443321 0 0111111111111110 0011111 111122211
Q ss_pred hhc--CCc----CCccHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC-
Q 038395 237 DEY--AIE----PKVEHYGCMVNLLSRAGQVEEAYKLVMDM--KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN- 307 (480)
Q Consensus 237 ~~~--~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~- 307 (480)
+.. .++ ++..+|...++--.+.|+.+.+.-+|++. +...=...|--.+.-....|+.+.|..+.....+..
T Consensus 283 krpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~ 362 (577)
T KOG1258|consen 283 KRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHV 362 (577)
T ss_pred cccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC
Confidence 110 112 23556777777778889999988888887 333234556555555555588888888877777744
Q ss_pred CCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 308 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
|..+.+...-....-..|+++.|..+++.+.+.
T Consensus 363 k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 363 KKTPIIHLLEARFEESNGNFDDAKVILQRIESE 395 (577)
T ss_pred CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Confidence 444444444444556677888888888888654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.83 E-value=13 Score=31.17 Aligned_cols=119 Identities=18% Similarity=0.165 Sum_probs=61.6
Q ss_pred HhcCCHHHHHHHHhhcCCCCHHHHHHH-----HHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHH--HHccCCh
Q 038395 52 AKQGEVAAARVLFDDMEEKDVVCWNVM-----IDGYAQHGLANEALVLFRRMLAEKVEPNEV-TAVAVLSA--CGQIGAL 123 (480)
Q Consensus 52 ~~~g~~~~A~~~f~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~--~~~~~~~ 123 (480)
.+.+..++|+.-|..+.+-+--+|-.| ....++.|+...|...|.+.-...-.|-.. -..-|=.+ +...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 445555666666666554333333222 233455566666666666655433233222 11111111 3345566
Q ss_pred HHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 038395 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171 (480)
Q Consensus 124 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~ 171 (480)
+....-.+-+... +.+.....-.+|.-+-.+.|++.+|.+.|..+..
T Consensus 149 ~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 6665555555544 4455555556666666677777777777766654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.82 E-value=9.5 Score=38.32 Aligned_cols=150 Identities=15% Similarity=0.079 Sum_probs=107.3
Q ss_pred HhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHH
Q 038395 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI-TFIGLLSACAHAGLVNEGRRFF 232 (480)
Q Consensus 154 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~ 232 (480)
.-.|+++.|..++..++++ .-+.++.-+.+.|..++|+++ .+|.. -|.. ..+.|+++.|.++.
T Consensus 597 vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFel----al~lgrl~iA~~la 660 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFEL----ALKLGRLDIAFDLA 660 (794)
T ss_pred hhhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhhh----hhhcCcHHHHHHHH
Confidence 3467888888877777632 334566667778888888764 33332 2322 34679999998876
Q ss_pred HHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch
Q 038395 233 NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312 (480)
Q Consensus 233 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 312 (480)
.+.. +..-|..|.++....|++..|.+.|.+.. -|..|+-.+...|+-+....+.....+.+..|.
T Consensus 661 ~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~- 726 (794)
T KOG0276|consen 661 VEAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL- 726 (794)
T ss_pred Hhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch-
Confidence 5543 35568999999999999999999998763 356777788888888877777777777776553
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHH
Q 038395 313 TYVLLSNIYAAIGNWDGVARVRTLM 337 (480)
Q Consensus 313 ~~~~l~~~~~~~g~~~~a~~~~~~m 337 (480)
...+|...|+++++.+++..-
T Consensus 727 ----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 727 ----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ----HHHHHHHcCCHHHHHHHHHhc
Confidence 234677899999999887543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.77 E-value=1.1 Score=25.74 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038395 73 VCWNVMIDGYAQHGLANEALVLFRRMLA 100 (480)
Q Consensus 73 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 100 (480)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4577777777777777777777777766
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.75 E-value=6.6 Score=33.39 Aligned_cols=59 Identities=17% Similarity=0.148 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHhcCCCC------hHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038395 144 QVGTALINMYSKCGSLKDARLVFDRVNDKD------VVVWNSMIVGYAMHGFGKDALQLFNEMCR 202 (480)
Q Consensus 144 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 202 (480)
..+..+.+.|.+.|+++.|.+.|.++.+.. +..+-.+|....-.+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456677778888888888888888776532 23455666777777777777777666544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.67 E-value=3.3 Score=30.74 Aligned_cols=63 Identities=19% Similarity=0.258 Sum_probs=48.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHH
Q 038395 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253 (480)
Q Consensus 189 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 253 (480)
+.-++.+-++.+....+.|+.....+.+.||.+.+++..|.++|+.++.+.| .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4446667777777778899999999999999999999999999998875433 24446666654
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.24 E-value=1 Score=25.89 Aligned_cols=30 Identities=13% Similarity=-0.021 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038395 279 LWGTLLGACRLHGNIALGEKIAEYLISQNL 308 (480)
Q Consensus 279 ~~~~li~a~~~~~~~~~a~~~~~~~~~~~~ 308 (480)
+|..+...+...|++++|...+++.++..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 456666677777777777777777777666
|
... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=87.67 E-value=26 Score=33.32 Aligned_cols=68 Identities=13% Similarity=0.115 Sum_probs=55.0
Q ss_pred CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC----CchhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 038395 275 PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA----NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 275 p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 342 (480)
....+|..+...+++.|.++.|...+.++...++. .+.....-+......|+..+|...++...+..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 34678999999999999999999999999886532 345666678888899999999999988877433
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.66 E-value=3.2 Score=34.23 Aligned_cols=47 Identities=15% Similarity=0.158 Sum_probs=20.2
Q ss_pred CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 038395 291 GNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337 (480)
Q Consensus 291 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 337 (480)
++.+.++.++..+.-+.|..+..-..-...+...|+|.+|.++++++
T Consensus 24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 24 GDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred CChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34444444444444444444333333333444444444444444444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.60 E-value=33 Score=36.08 Aligned_cols=179 Identities=10% Similarity=-0.006 Sum_probs=113.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCch--hHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 038395 109 TAVAVLSACGQIGALESGRWIHSYIENSRNIKVNV--QVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186 (480)
Q Consensus 109 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 186 (480)
+...-+....+...++.|..+-+.- +.+++. .......+.+.+.|++++|..-|-+...--.. ...|.-|..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcC
Confidence 3455666667777777777664432 444432 23334455566789999998887665432111 224555666
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHH
Q 038395 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYK 266 (480)
Q Consensus 187 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 266 (480)
.....+-..+++.+.+.|+.- ...-+.|+.+|.+.++.++-.++.+.-. + |.. ..-....+..+.+.+-+++|..
T Consensus 410 aq~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~--~fd~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEW--FFDVETALEILRKSNYLDEAEL 484 (933)
T ss_pred HHHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCC-C-cce--eeeHHHHHHHHHHhChHHHHHH
Confidence 666777778888888888663 3344568889999999998877766544 2 211 1123456777888888888888
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 038395 267 LVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYL 303 (480)
Q Consensus 267 ~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~ 303 (480)
+-.+.+. +......+ +-..+++++|.+.++.+
T Consensus 485 LA~k~~~--he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 485 LATKFKK--HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhcc--CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 8777653 33333333 34567888888877653
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.41 E-value=0.55 Score=38.33 Aligned_cols=25 Identities=8% Similarity=0.012 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHH
Q 038395 174 VVVWNSMIVGYAMHGFGKDALQLFN 198 (480)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~l~~ 198 (480)
....+.++..|++.+..++..++++
T Consensus 42 ~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 42 PDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3444555555555544444444443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=87.41 E-value=41 Score=35.27 Aligned_cols=299 Identities=8% Similarity=-0.017 Sum_probs=131.9
Q ss_pred hcCChHHHHHHHhhCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHhhcCC-CCHH-HHHHHHHHHHHcCChHHHHHHHH
Q 038395 22 RGGDVLSAEKLFATMPQRSL---VSLTTMLTCYAKQGEVAAARVLFDDMEE-KDVV-CWNVMIDGYAQHGLANEALVLFR 96 (480)
Q Consensus 22 ~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~f~~~~~-~~~~-~~~~li~~~~~~g~~~~A~~~~~ 96 (480)
+.|++..+.++-..+...-. ..|-.+..... ....++....+++-+. |-.. .-..-+..+.+.+++...++.+.
T Consensus 45 ~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~ 123 (644)
T PRK11619 45 DNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLM-NQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSP 123 (644)
T ss_pred HCCCHHHHHHHHHhccCCCcHhHHHHHHHHhccc-cCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcC
Confidence 56677777777776653222 33433333221 2245566666655543 3111 12223334445666666665221
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCH-----------------
Q 038395 97 RMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL----------------- 159 (480)
Q Consensus 97 ~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~----------------- 159 (480)
. .+.+...-.....+....|+.++|......+=.. | ...+..++.+++.+.+.|.+
T Consensus 124 ~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~-g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~ 196 (644)
T PRK11619 124 E-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLT-G-KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGN 196 (644)
T ss_pred C-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-C-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Confidence 1 1334444455566666666666554444444332 2 22334455555555544433
Q ss_pred -HHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHccCCHHHHHHHHHHh
Q 038395 160 -KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT---FIGLLSACAHAGLVNEGRRFFNTM 235 (480)
Q Consensus 160 -~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~a~~~~g~~~~a~~~~~~m 235 (480)
..|..+...+..........++..+ .++..+..++.. +.|+... ....+.-+ ...+.+.|...+...
T Consensus 197 ~~lA~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rl-ar~d~~~A~~~~~~~ 267 (644)
T PRK11619 197 TGLVTYLAKQLPADYQTIASALIKLQ---NDPNTVETFART-----TGPTDFTRQMAAVAFASV-ARQDAENARLMIPSL 267 (644)
T ss_pred HHHHHHHHHhcChhHHHHHHHHHHHH---HCHHHHHHHhhc-----cCCChhhHHHHHHHHHHH-HHhCHHHHHHHHHHH
Confidence 3333333322111111111112111 112222221111 1122211 11111112 234556777777766
Q ss_pred hhhcCCcCCc--cHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch
Q 038395 236 KDEYAIEPKV--EHYGCMVNLLSRAGQVEEAYKLVMDMK-IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312 (480)
Q Consensus 236 ~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 312 (480)
....++.+.. .....+.-.....+..++|.+.++... ...+...+.--+......++.+.+...+..|.........
T Consensus 268 ~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~r 347 (644)
T PRK11619 268 VRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDE 347 (644)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHh
Confidence 4433333322 122333322233322556666666542 1123333333444444666776666666665442223333
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHH
Q 038395 313 TYVLLSNIYAAIGNWDGVARVRTLM 337 (480)
Q Consensus 313 ~~~~l~~~~~~~g~~~~a~~~~~~m 337 (480)
-..=+..++...|+.++|...|+..
T Consensus 348 w~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 348 WRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455666666677777777777765
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=87.35 E-value=30 Score=33.73 Aligned_cols=131 Identities=6% Similarity=0.090 Sum_probs=72.5
Q ss_pred HhcCCHHHHHHHHhhcCCC---CHH------HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHcc
Q 038395 52 AKQGEVAAARVLFDDMEEK---DVV------CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA--CGQI 120 (480)
Q Consensus 52 ~~~g~~~~A~~~f~~~~~~---~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~--~~~~ 120 (480)
-+.+++.+|.++|.++-+. +.. .-+-++++|..++ .+..........+. .| ...|..+..+ +-+.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHh
Confidence 4677888888888887642 211 2345666665543 34444444444432 23 2334444444 3466
Q ss_pred CChHHHHHHHHHHHHhC-CCCC------------chhHHHHHHHHHHhCCCHHHHHHHHHhcCC--------CChHHHHH
Q 038395 121 GALESGRWIHSYIENSR-NIKV------------NVQVGTALINMYSKCGSLKDARLVFDRVND--------KDVVVWNS 179 (480)
Q Consensus 121 ~~~~~a~~~~~~~~~~~-~~~~------------~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--------~~~~~~~~ 179 (480)
+.+..|.+.+..-.... +..+ |-..-+..++.+.+.|++.+++.++++|.. -++.+||-
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 77777777766655420 1111 222334556667777888888777777653 26666776
Q ss_pred HHHHHHh
Q 038395 180 MIVGYAM 186 (480)
Q Consensus 180 li~~~~~ 186 (480)
++-.+.+
T Consensus 173 ~vlmlsr 179 (549)
T PF07079_consen 173 AVLMLSR 179 (549)
T ss_pred HHHHHhH
Confidence 5544443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=87.31 E-value=18 Score=33.03 Aligned_cols=112 Identities=12% Similarity=0.119 Sum_probs=64.4
Q ss_pred CChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHc-cC-ChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHH
Q 038395 86 GLANEALVLFRRMLA-EKVEPNEVTAVAVLSACGQ-IG-ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162 (480)
Q Consensus 86 g~~~~A~~~~~~m~~-~g~~pd~~t~~~ll~~~~~-~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 162 (480)
....+|+++|+..-. ..+--|..+...+++.... .+ .+..--++.+.+...++-.++..+....+..+++.+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 344566666653211 2244466666666666543 11 23333344444544334566666777777777777777777
Q ss_pred HHHHHhcCC-----CChHHHHHHHHHHHhcCChHHHHHHH
Q 038395 163 RLVFDRVND-----KDVVVWNSMIVGYAMHGFGKDALQLF 197 (480)
Q Consensus 163 ~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~ 197 (480)
.++++.... .|...|..+|..-..+|+..-...+.
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 777765432 36677777777777777765444433
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.27 E-value=19 Score=31.38 Aligned_cols=162 Identities=17% Similarity=0.173 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHH
Q 038395 174 VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253 (480)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 253 (480)
..+||-+.--+...|+++.|.+.|+...+....-+-...|.-| ++--.|++.-|.+-+...-..-.-.|-...|--++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~- 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN- 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-
Confidence 3567777777777777777777777776643222222222222 23345677777655544432211122122222222
Q ss_pred HHHHcCCHHHHHHHH-HhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-------chhHHHHHHHHHHcC
Q 038395 254 LLSRAGQVEEAYKLV-MDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN-------SGTYVLLSNIYAAIG 325 (480)
Q Consensus 254 ~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g 325 (480)
-+.-++.+|..-+ ++.. ..|..-|...|-.+.- |++. .+.+++++.....++ ..+|.-|..-|...|
T Consensus 177 --E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 177 --EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred --HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 1233455554433 3331 2344455544433321 1111 122333333322222 247888999999999
Q ss_pred ChhHHHHHHHHHHhCCC
Q 038395 326 NWDGVARVRTLMKEKGV 342 (480)
Q Consensus 326 ~~~~a~~~~~~m~~~~~ 342 (480)
+.++|..+|+.....++
T Consensus 252 ~~~~A~~LfKLaiannV 268 (297)
T COG4785 252 DLDEATALFKLAVANNV 268 (297)
T ss_pred cHHHHHHHHHHHHHHhH
Confidence 99999999998876654
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.83 E-value=4.9 Score=29.86 Aligned_cols=59 Identities=14% Similarity=0.188 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHH
Q 038395 90 EALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI 150 (480)
Q Consensus 90 ~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 150 (480)
++.+-++.+....+.|++....+.++||-+.+++..|..+++-++.. ...+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHH
Confidence 45555666666678888888888888888888888888888877643 222334555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.45 E-value=47 Score=35.05 Aligned_cols=85 Identities=11% Similarity=-0.000 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHH
Q 038395 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLL 255 (480)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 255 (480)
.-+.|+.+|.+.++.++-.++.+.-- .|.. ..-+...+..|.+.+-.++|..+-.... . .. ..+--.+
T Consensus 433 httlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~----~--he---~vl~ill 500 (933)
T KOG2114|consen 433 HTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFK----K--HE---WVLDILL 500 (933)
T ss_pred hHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhc----c--CH---HHHHHHH
Confidence 33445555555555554444443322 1211 0112233444455555555554333222 1 11 1222233
Q ss_pred HHcCCHHHHHHHHHhCC
Q 038395 256 SRAGQVEEAYKLVMDMK 272 (480)
Q Consensus 256 ~~~g~~~~A~~~~~~m~ 272 (480)
-..+++++|++++..+|
T Consensus 501 e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 501 EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHhcCHHHHHHHHhcCC
Confidence 44566777777777765
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.27 E-value=3.6 Score=33.39 Aligned_cols=52 Identities=13% Similarity=0.064 Sum_probs=32.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 290 HGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
.++.++++.++..+.-+.|..+..-..-...+...|+|++|.++++++.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 5666666666666666666655555555555666666666666666665544
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.70 E-value=2 Score=25.86 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038395 279 LWGTLLGACRLHGNIALGEKIAEYLIS 305 (480)
Q Consensus 279 ~~~~li~a~~~~~~~~~a~~~~~~~~~ 305 (480)
+++.|...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344444444444555555444444443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.63 E-value=2.2 Score=25.72 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038395 73 VCWNVMIDGYAQHGLANEALVLFRRMLA 100 (480)
Q Consensus 73 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 100 (480)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677777888888888888888777654
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.24 E-value=5.2 Score=30.08 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 038395 90 EALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151 (480)
Q Consensus 90 ~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 151 (480)
+..+-++.+....+.|++....+.|.||-+.+++..|.++++-++.. ..+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K--~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK--CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccChHHHHHHHHH
Confidence 45555666666778888888888888888888888888888888764 2233335655553
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.06 E-value=19 Score=29.32 Aligned_cols=65 Identities=5% Similarity=0.046 Sum_probs=32.0
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCch-hHHHHHHHHHHhCCCHHHHHHHHHhcCCCC-hHHHHHHHHHHHh
Q 038395 119 QIGALESGRWIHSYIENSRNIKVNV-QVGTALINMYSKCGSLKDARLVFDRVNDKD-VVVWNSMIVGYAM 186 (480)
Q Consensus 119 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~y~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~ 186 (480)
..++.+.+..+++.+.-. .|+. ..-..-.-.+...|++++|.++|+++.+.. ...|..-+.++|.
T Consensus 22 ~~~d~~D~e~lLdALrvL---rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL---RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred hcCCHHHHHHHHHHHHHh---CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 355566666666655532 2321 111222333556677777777777766543 2244444444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=84.93 E-value=7.7 Score=25.35 Aligned_cols=50 Identities=16% Similarity=0.241 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeeEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCc
Q 038395 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGY 389 (480)
Q Consensus 314 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 389 (480)
...++-++.+.|++++|.+..+.+.+. .|...++...-..+.+.|.+.|+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 345777899999999999999988764 45666667666667778887774
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=84.73 E-value=15 Score=27.64 Aligned_cols=88 Identities=14% Similarity=0.168 Sum_probs=59.4
Q ss_pred ChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038395 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC 201 (480)
Q Consensus 122 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 201 (480)
..++|..|-+.+... +.. ...+--.-+..+...|++++|..+.+.+..||...|-+|-. .+.|..+++..-+.+|.
T Consensus 20 cHqEA~tIAdwL~~~-~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 20 CHQEANTIADWLHLK-GES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHHhcC-Cch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 346666666666543 211 22233333456778899999999999999999999988765 46777777777777787
Q ss_pred HcCCCCCHHHHHH
Q 038395 202 RIRLKPSDITFIG 214 (480)
Q Consensus 202 ~~g~~p~~~t~~~ 214 (480)
.+| .|...+|..
T Consensus 96 ~sg-~p~lq~Faa 107 (115)
T TIGR02508 96 ASG-DPRLQTFVA 107 (115)
T ss_pred hCC-CHHHHHHHH
Confidence 765 455555543
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.71 E-value=4.3 Score=37.22 Aligned_cols=96 Identities=11% Similarity=0.186 Sum_probs=69.6
Q ss_pred CCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 038395 138 NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK---------DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208 (480)
Q Consensus 138 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 208 (480)
|.+.+..+...++..-....+++++...+-++... ...+|--++ -.-++++++.++..=.+.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccccc
Confidence 55555666666666666677788888877766541 233333333 23467788888888888999999
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 038395 209 DITFIGLLSACAHAGLVNEGRRFFNTMKD 237 (480)
Q Consensus 209 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 237 (480)
..+++.+++.+.+.++..+|.++.-.|..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999999888887766654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=84.60 E-value=2.7 Score=38.96 Aligned_cols=108 Identities=14% Similarity=0.031 Sum_probs=73.2
Q ss_pred HHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCh
Q 038395 217 SACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIE-PDSVLWGTLLGACRLHGNI 293 (480)
Q Consensus 217 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~a~~~~~~~ 293 (480)
+-|.+.|.+++|...|.... .+.| ++.++..-..+|.+..++..|..=-... .+. .-...|..-..+-...|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 45888999999999998876 3456 7888888888999998888776544433 111 1133455555555566788
Q ss_pred hHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHH
Q 038395 294 ALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVA 331 (480)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 331 (480)
.+|.+-++..+++.|.+.. |-..|.+.....++.
T Consensus 182 ~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIE----LKKSLARINSLRERK 215 (536)
T ss_pred HHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhh
Confidence 8888889999999998543 333444444444443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.27 E-value=2.7 Score=23.92 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038395 74 CWNVMIDGYAQHGLANEALVLFRRMLA 100 (480)
Q Consensus 74 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 100 (480)
.|..+...|.+.|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456666777777777777777777665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=83.65 E-value=16 Score=27.38 Aligned_cols=83 Identities=17% Similarity=0.182 Sum_probs=55.8
Q ss_pred hHHHHHHHhhCCC-CChhHHHHH--HHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038395 26 VLSAEKLFATMPQ-RSLVSLTTM--LTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102 (480)
Q Consensus 26 ~~~A~~~~~~m~~-~~~~~~~~l--i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 102 (480)
.++|..+-+.... ++..--..| +..+...|++++|..+.+.+.-||...|-+|-. -+.|..+++..-+.+|-..|
T Consensus 21 HqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 21 HQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 4566665555442 221222223 345678899999999999999999999988865 36777777777777777776
Q ss_pred CCCCHHHHH
Q 038395 103 VEPNEVTAV 111 (480)
Q Consensus 103 ~~pd~~t~~ 111 (480)
.|....|.
T Consensus 99 -~p~lq~Fa 106 (115)
T TIGR02508 99 -DPRLQTFV 106 (115)
T ss_pred -CHHHHHHH
Confidence 45554543
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=83.47 E-value=6.5 Score=38.26 Aligned_cols=121 Identities=16% Similarity=0.123 Sum_probs=82.8
Q ss_pred hcCChHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHH
Q 038395 186 MHGFGKDAL-QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264 (480)
Q Consensus 186 ~~g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 264 (480)
..|+.-.|- ++|..+....-.|+.+...+.| ..+.|+++.+.+.+....+ -+.....+..+++....+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 356655444 4556666655677777666665 5678999999888887764 3455677788888888899999999
Q ss_pred HHHHHhC-CCC-CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038395 265 YKLVMDM-KIE-PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310 (480)
Q Consensus 265 ~~~~~~m-~~~-p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~ 310 (480)
..+-..| +-+ .++.+...-.......|-++++...++++..+.|+.
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 9888877 211 233333333344455677888888888888877653
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=83.24 E-value=2 Score=23.17 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHH
Q 038395 313 TYVLLSNIYAAIGNWDGVARVRT 335 (480)
Q Consensus 313 ~~~~l~~~~~~~g~~~~a~~~~~ 335 (480)
+...+..++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45667778888888888887764
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.23 E-value=38 Score=30.59 Aligned_cols=241 Identities=18% Similarity=0.259 Sum_probs=136.6
Q ss_pred hcCCHHHHHHHHhhcCC--CC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHH---CCCC--CCHHHHHHHHHHHHcc
Q 038395 53 KQGEVAAARVLFDDMEE--KD-----VVCWNVMIDGYAQHGLANEALVLFRRMLA---EKVE--PNEVTAVAVLSACGQI 120 (480)
Q Consensus 53 ~~g~~~~A~~~f~~~~~--~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~--pd~~t~~~ll~~~~~~ 120 (480)
+..+.++|+.-|++..+ +. -.+...+|..+.+.|++++.+..|.+|+. ..+. -+..+.++++.-.+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34567778777777653 21 22445678888888888888888888753 1222 2345677777776666
Q ss_pred CChHHHHHHHHHHHHhCCCCCc----hhHHHHHHHHHHhCCCHHHHHHHHHhcCCC--------C-------hHHHHHHH
Q 038395 121 GALESGRWIHSYIENSRNIKVN----VQVGTALINMYSKCGSLKDARLVFDRVNDK--------D-------VVVWNSMI 181 (480)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--------~-------~~~~~~li 181 (480)
.+.+.-..+++.-...-.-..+ -.+-+.|...|...|++.+..+++.++... | ...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 6665555554443321000111 123356777888888888888888777531 1 24677778
Q ss_pred HHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH-----ccCCHHHHHHHHHHhhhhcCC--cCC---ccHHHH
Q 038395 182 VGYAMHGFGKDALQLFNEMCRIR-LKPSDITFIGLLSACA-----HAGLVNEGRRFFNTMKDEYAI--EPK---VEHYGC 250 (480)
Q Consensus 182 ~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~--~p~---~~~~~~ 250 (480)
..|....+-.+...+|++...-. --|-.. ...+|.-|. +.|.+++|-.-|-+.-+.+.- .|. .--|-.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLV 277 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLV 277 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHH
Confidence 88888887777777887765422 233332 334555553 557788776444333333322 222 223555
Q ss_pred HHHHHHHcCC----HHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHH
Q 038395 251 MVNLLSRAGQ----VEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299 (480)
Q Consensus 251 li~~~~~~g~----~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~ 299 (480)
|..++.+.|- -++|.- ..-.|.....+.|+.+|..+ ++.+-+++
T Consensus 278 LANMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~N-dI~eFE~I 325 (440)
T KOG1464|consen 278 LANMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQNN-DIIEFERI 325 (440)
T ss_pred HHHHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhcc-cHHHHHHH
Confidence 5666666552 112210 02234556678888888654 44443333
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.09 E-value=6.1 Score=34.35 Aligned_cols=63 Identities=14% Similarity=0.081 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038395 248 YGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310 (480)
Q Consensus 248 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~ 310 (480)
.+.-+..+.+.+.+++|+...++- +-+| |...-..++..++..|++++|..-++.+-++.|..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 344556677778888887776654 4455 45556667788888888888888777777777754
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=81.57 E-value=44 Score=30.81 Aligned_cols=62 Identities=11% Similarity=-0.038 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhh
Q 038395 176 VWNSMIVGYAMHGFGK---DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238 (480)
Q Consensus 176 ~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 238 (480)
+...++.+|...+..+ +|.++++.+...... ....+..-+..+.+.++.+++.+.+..|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4555666666665543 455566666443222 1234444455566677777777777777753
|
It is also involved in sporulation []. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=81.22 E-value=2.6 Score=24.52 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=14.4
Q ss_pred CCchhHHHHHHHHHHhCCCHHHHH
Q 038395 140 KVNVQVGTALINMYSKCGSLKDAR 163 (480)
Q Consensus 140 ~~~~~~~~~li~~y~~~g~~~~A~ 163 (480)
|.+...|+.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445556666666666666666654
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=81.19 E-value=31 Score=28.88 Aligned_cols=131 Identities=11% Similarity=0.088 Sum_probs=62.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhC-CCHHHHHHHHHhcCC
Q 038395 93 VLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC-GSLKDARLVFDRVND 171 (480)
Q Consensus 93 ~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~-g~~~~A~~~f~~m~~ 171 (480)
+..+.+.+.+++|+...+..+++.+.+.|.+..-.+++..- -++++..+...|++.-.+. .-..-|...+.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~----Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYH----VIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhc----ccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 34455556667777777777777777777665544443321 2233333333333222111 01223333333332
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 038395 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM 235 (480)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 235 (480)
..+..++..+...|++-+|+++.+..... +......++.+-.+.++...=..+|+-.
T Consensus 90 ---~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 90 ---TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred ---hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 23444555666677777777776654221 1122234555555555554444444433
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=81.02 E-value=13 Score=29.78 Aligned_cols=65 Identities=14% Similarity=-0.011 Sum_probs=40.2
Q ss_pred CHhHHHHHHHHHHhc---CChhHHHHHHHHHHH-cCCCCch-hHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 276 DSVLWGTLLGACRLH---GNIALGEKIAEYLIS-QNLANSG-TYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 276 ~~~~~~~li~a~~~~---~~~~~a~~~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
...+--.+..++... .++.++..+++.+.+ ..|.... ....|.-++.+.|+++.+.++.+.+.+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 333333444444444 346677788888886 3343222 3345666788888888888888877654
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=80.80 E-value=3.9 Score=22.97 Aligned_cols=25 Identities=12% Similarity=-0.013 Sum_probs=12.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCC
Q 038395 284 LGACRLHGNIALGEKIAEYLISQNL 308 (480)
Q Consensus 284 i~a~~~~~~~~~a~~~~~~~~~~~~ 308 (480)
..++...|+.++|.+.++++++..|
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3344444555555555555554444
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=80.58 E-value=33 Score=28.75 Aligned_cols=124 Identities=12% Similarity=0.082 Sum_probs=81.0
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHH
Q 038395 68 EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGT 147 (480)
Q Consensus 68 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 147 (480)
..++...|..+|..+.+.|++... .++.+.++-||.......+-.... ....+.++=-.|.++ +. ..+.
T Consensus 25 i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR--L~---~~~~ 93 (167)
T PF07035_consen 25 IPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR--LG---TAYE 93 (167)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH--hh---hhHH
Confidence 346777899999999999987664 555666778887776665544433 233344443333332 11 1356
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038395 148 ALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202 (480)
Q Consensus 148 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 202 (480)
.+++.+...|++-+|.+..+....-+...-..++.+-.+.++...=..+|+-..+
T Consensus 94 ~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7788899999999999999887555555556667777777776655555554444
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=80.13 E-value=0.65 Score=37.88 Aligned_cols=84 Identities=18% Similarity=0.187 Sum_probs=52.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHH
Q 038395 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKD 192 (480)
Q Consensus 113 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 192 (480)
++..+.+.+.++....+++.+.+. +...+....+.++..|++.++.++..++++.... .-...++..+.+.|.+++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~-~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKE-NKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHT-STC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhc-ccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 445555666777777777777765 5556778888888888888887888777774332 222334455555555555
Q ss_pred HHHHHHHH
Q 038395 193 ALQLFNEM 200 (480)
Q Consensus 193 A~~l~~~m 200 (480)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 55555443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.4 bits (142), Expect = 2e-09
Identities = 16/119 (13%), Positives = 36/119 (30%), Gaps = 11/119 (9%)
Query: 14 TSLVDLYARGGDVLSAEKLFATMPQRSL----VSLTTMLTCYAKQGEVAAARVLFDDMEE 69
L+ + + Q L L C ++ A L
Sbjct: 96 ARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHG 155
Query: 70 K-------DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
+ + +N ++ G+A+ G E + + + + P+ ++ A L G+
Sbjct: 156 QRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 55.6 bits (132), Expect = 2e-08
Identities = 23/196 (11%), Positives = 59/196 (30%), Gaps = 8/196 (4%)
Query: 88 ANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGT 147
A L P E +L +L+ + S + + Q
Sbjct: 73 KQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQ-APSGQHSQAQLSGQQQRLL 131
Query: 148 ALINMYSKCGSLKDARLVFDRVNDK-------DVVVWNSMIVGYAMHGFGKDALQLFNEM 200
A L A + + + + ++N++++G+A G K+ + + +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 201 CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260
L P +++ L + ++ + +++ RA
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251
Query: 261 VEEAYKLVMDMKIEPD 276
++ +K+ + P
Sbjct: 252 LKAVHKVKPTFSLPPQ 267
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 3e-09
Identities = 58/466 (12%), Positives = 117/466 (25%), Gaps = 150/466 (32%)
Query: 5 SLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ------RSLVSLTT--------MLTC 50
S+ +Y+ D V + K + Q ++L+ L +L
Sbjct: 106 SMMTRMYIEQ--RDRLYNDNQVFA--KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 51 YAKQGEVAAARVLFDDMEEK---DVVCW-NVMIDGYAQHGLANEALVLFRRM--LAEKVE 104
K A V + + W N+ N + + L +++
Sbjct: 162 -GKT--WVALDVCLSYKVQCKMDFKIFWLNL--------KNCNSPETVLEMLQKLLYQID 210
Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
PN S ++S NIK+ + A + K ++ L
Sbjct: 211 PN----------------------WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 165 VFDRVNDKDVV-----------------VWNSMIVGYAMH--------GFGKD-ALQLF- 197
V V + V + + H D L
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 198 -----------NEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF-----FNTMKDEYAI 241
E+ P ++ I + + + N K I
Sbjct: 309 KYLDCRPQDLPREVLTT--NPRRLSIIA-------ESIRDGLATWDNWKHVNCDKLTTII 359
Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYK-LVM---DMKIEPD--SVLWGTLLGACRLHGNIAL 295
E + L A + + + L + I S++W ++ +
Sbjct: 360 ESSLNV-------LEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV------- 404
Query: 296 GEKIAEYLISQNLAN----SGTYVLLSNIYAAI-GNWDGVARV-RTLMKEKGVQKE---P 346
+ L +L T + S IY + + + R+++ + K
Sbjct: 405 -MVVVNKLHKYSLVEKQPKESTISIPS-IYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEIN------GWLKA 386
L + + H K+ E + +L+
Sbjct: 463 DLIPPYLDQYFYSHIG---HHLKNIEHPERMTLFRMVFLDFRFLEQ 505
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 480 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.88 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.77 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.75 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.74 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.74 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.72 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.72 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.71 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.7 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.7 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.69 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.64 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.63 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.62 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.62 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.61 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.58 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.56 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.55 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.54 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.54 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.54 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.54 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.54 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.53 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.53 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.53 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.52 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.52 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.52 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.51 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.51 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.51 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.5 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.5 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.48 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.47 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.45 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.44 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.44 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.44 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.43 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.42 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.39 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.39 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.35 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.35 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.34 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.33 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.32 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.31 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.28 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.27 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.26 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.24 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.23 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.21 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.21 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.19 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.14 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.12 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.06 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.06 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.06 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.04 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.04 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.03 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.99 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.98 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.95 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.95 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.95 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.94 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.91 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.89 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.88 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.82 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.79 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.78 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.77 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.76 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.76 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.75 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.75 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.74 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.74 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.72 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.71 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.7 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.69 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.69 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.68 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.67 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.64 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.64 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.61 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.58 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.58 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.57 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.56 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.55 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.54 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.54 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.52 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.51 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.5 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.5 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.49 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.48 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.47 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.46 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.44 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.44 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.42 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.41 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.41 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.38 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.36 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.36 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.34 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.32 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.32 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.3 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.29 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.28 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.28 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.27 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.27 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.27 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.27 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.26 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.26 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.26 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.25 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.25 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.21 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.21 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.19 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.18 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.18 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.17 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.17 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.17 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.16 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.15 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.14 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.14 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.1 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.06 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.06 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.05 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.04 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.03 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.03 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.03 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.02 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.02 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.02 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.02 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.0 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.99 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.96 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.94 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.92 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.85 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.79 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.79 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.76 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.76 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.73 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.73 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.7 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.69 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.68 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.65 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.63 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.57 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.54 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.48 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.43 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.39 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.19 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.15 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.13 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.11 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.08 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.05 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.04 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.01 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.97 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.95 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.93 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.89 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.88 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.85 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.77 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.73 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.57 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.41 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.91 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.81 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.79 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.61 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.57 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.07 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.51 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.17 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.05 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.33 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.33 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.27 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.9 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 92.05 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 91.88 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.43 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 91.37 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.07 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 90.89 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 90.84 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 90.37 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 90.28 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.82 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 89.79 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 89.23 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.96 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 86.93 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.03 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.82 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 85.57 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 85.42 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 84.89 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 84.58 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 83.95 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 83.82 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 83.12 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 82.93 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 82.27 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 81.08 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 81.04 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 80.87 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 80.7 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 80.57 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-31 Score=268.90 Aligned_cols=262 Identities=10% Similarity=0.022 Sum_probs=203.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 038395 74 CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMY 153 (480)
Q Consensus 74 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y 153 (480)
+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+ ..+.+..+++.++.+|
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~ 383 (597)
T 2xpi_A 307 LLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVD--RHPEKAVTWLAVGIYY 383 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHH
Confidence 33344444444444444444444443322 11333344444444444444444444444443 2345678889999999
Q ss_pred HhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038395 154 SKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230 (480)
Q Consensus 154 ~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 230 (480)
.++|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.+
T Consensus 384 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 462 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANE 462 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999998753 478899999999999999999999999998764 3478899999999999999999999
Q ss_pred HHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC--HhHHHHHHHHHHhcCChhHHHHHHH
Q 038395 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-------KIEPD--SVLWGTLLGACRLHGNIALGEKIAE 301 (480)
Q Consensus 231 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~li~a~~~~~~~~~a~~~~~ 301 (480)
+|+.+.+. .+.+..+|+.++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|...|++++|...++
T Consensus 463 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 463 YLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999854 2346888999999999999999999999988 45777 7899999999999999999999999
Q ss_pred HHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 302 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
++.+.+|+++.+|..++.+|.+.|++++|.+.++++.+..
T Consensus 541 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 541 QGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999998753
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-33 Score=283.96 Aligned_cols=372 Identities=10% Similarity=-0.036 Sum_probs=305.1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhcC--CCCHHHHHHHHHHHH
Q 038395 8 KDLYVSTSLVDLYARGGDVLSAEKLFATMP--QRSLVSLTTMLTCYAKQGEVAAARVLFDDME--EKDVVCWNVMIDGYA 83 (480)
Q Consensus 8 ~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~ 83 (480)
+++..|+.++..|.+.|++++|..+|++|. .|+..+|..++.+|.+.|++++|..+|+++. .++..+|+.++.+|.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLV 161 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 577889999999999999999999999986 4788899999999999999999999999984 578899999999999
Q ss_pred HcCChHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhH---
Q 038395 84 QHGLANEALVLFRRMLAE---------------KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQV--- 145 (480)
Q Consensus 84 ~~g~~~~A~~~~~~m~~~---------------g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--- 145 (480)
+.|++++|+++|+++... |.+++..++..++.++.+.|++++|.++|+.+.+. + +.+...
T Consensus 162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-p~~~~~~~~ 239 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV-D-AKCYEAFDQ 239 (597)
T ss_dssp HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHH
T ss_pred HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-chhhHHHHH
Confidence 999999999999853221 22345789999999999999999999999999876 2 222333
Q ss_pred -----------------------------------HHHHHHHHHhCCCHHHHHHHHHhcCC--CChHHHHHHHHHHHhcC
Q 038395 146 -----------------------------------GTALINMYSKCGSLKDARLVFDRVND--KDVVVWNSMIVGYAMHG 188 (480)
Q Consensus 146 -----------------------------------~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g 188 (480)
|+.++.+|.++|++++|.++|+++.+ ++..+|+.++.+|.+.|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 23335667788999999999999987 78999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHH
Q 038395 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268 (480)
Q Consensus 189 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 268 (480)
++++|+++|+++.+.+. .+..++..++.++...|+.++|..+++.+.+. .+.+..+++.++.+|.+.|++++|.++|
T Consensus 320 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 320 RFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp CHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999987653 36778889999999999999999999998843 2445788899999999999999999999
Q ss_pred HhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCC
Q 038395 269 MDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346 (480)
Q Consensus 269 ~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 346 (480)
+++ ...| +..+|+.++.++.+.|++++|.++++++.+..|++..+|..++.+|.+.|++++|.++|+++.+.... ++
T Consensus 397 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 475 (597)
T 2xpi_A 397 SKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DP 475 (597)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-Ch
Confidence 988 3334 57899999999999999999999999999999998899999999999999999999999999875422 12
Q ss_pred ceeeEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcccCC
Q 038395 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQT 393 (480)
Q Consensus 347 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~ 393 (480)
..|.. +...+...++.+++.+.++++.+...+.|..|+.
T Consensus 476 -~~~~~-------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~ 514 (597)
T 2xpi_A 476 -LLLNE-------LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514 (597)
T ss_dssp -HHHHH-------HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG
T ss_pred -HHHHH-------HHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh
Confidence 12211 1223445788888888777776666666777774
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=258.60 Aligned_cols=182 Identities=13% Similarity=0.133 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC---------hHHHHHHHHHHHHhCCCCCchh
Q 038395 74 CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA---------LESGRWIHSYIENSRNIKVNVQ 144 (480)
Q Consensus 74 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 144 (480)
.++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|++.+. ++.|.++|++|.+. |+.||..
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~-G~~Pd~~ 106 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD-KVVPNEA 106 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-TCCCCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-CCCCCHH
Confidence 4666777777777777777777777777777777777777777765443 56677777777776 7777777
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038395 145 VGTALINMYSKCGSLKDARLVFDRVND----KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220 (480)
Q Consensus 145 ~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 220 (480)
+|++||++|+++|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 777777777777777777777777753 5777777777777777777777777777777777777777777777777
Q ss_pred ccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHH
Q 038395 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR 257 (480)
Q Consensus 221 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 257 (480)
+.|++++|.++|++|.+. +..|+..||+.+++.|+.
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 777777777777777743 777777777777777654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-29 Score=248.46 Aligned_cols=201 Identities=9% Similarity=0.096 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCC---------
Q 038395 89 NEALVLFRRMLAEKVEPNE-VTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS--------- 158 (480)
Q Consensus 89 ~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~--------- 158 (480)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+. |+.||..+||+||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 4456677788877776654 46889999999999999999999999999 999999999999999998765
Q ss_pred HHHHHHHHHhcCC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038395 159 LKDARLVFDRVND----KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNT 234 (480)
Q Consensus 159 ~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 234 (480)
++.|.++|++|.. ||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 6889999999964 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhcC
Q 038395 235 MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHG 291 (480)
Q Consensus 235 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~a~~~~~ 291 (480)
|.+. |+.||..+|++||++|++.|++++|.++|++| +..|+..||+.++..|...+
T Consensus 166 M~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 166 MVES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 9964 99999999999999999999999999999999 88999999999999987643
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-24 Score=207.58 Aligned_cols=323 Identities=11% Similarity=0.040 Sum_probs=228.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHH
Q 038395 9 DLYVSTSLVDLYARGGDVLSAEKLFATMPQ---RSLVSLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGY 82 (480)
Q Consensus 9 d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~ 82 (480)
+...+..+...+.+.|++++|...++...+ .+..+|..+...|.+.|++++|...|+++.+ | +..+|..+..++
T Consensus 32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 111 (388)
T 1w3b_A 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL 111 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 345566666777777777777777766542 3556777777777777777777777777653 3 445677777777
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHH
Q 038395 83 AQHGLANEALVLFRRMLAEKVEP-NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161 (480)
Q Consensus 83 ~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 161 (480)
.+.|++++|++.|+++.+. .| +...+..+...+...|++++|.+.+..+.+. .+.+..++..+...|.+.|++++
T Consensus 112 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 187 (388)
T 1w3b_A 112 VAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWL 187 (388)
T ss_dssp HHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777764 34 3445566666677777777777777777764 34456677777777777777777
Q ss_pred HHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhh
Q 038395 162 ARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238 (480)
Q Consensus 162 A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 238 (480)
|...|+++.+ .+...|..+...+...|++++|+..|++..... +.+..++..+..++...|++++|...|+.+.+.
T Consensus 188 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7777777653 345667777777777777777777777776642 224566777777777777888887777777642
Q ss_pred cCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHH
Q 038395 239 YAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KI-EPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV 315 (480)
Q Consensus 239 ~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 315 (480)
.| +...|..+...|.+.|++++|.+.|+++ .. +++..+|..+...+...|++++|...++++++..|++..++.
T Consensus 267 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 343 (388)
T 1w3b_A 267 ---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343 (388)
T ss_dssp ---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 33 3556777777777778888877777776 22 235677777777777777888888777777777777777777
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHh
Q 038395 316 LLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 316 ~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
.++.+|.+.|++++|.+.++++.+
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 344 NLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777777777888888777777765
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-23 Score=201.46 Aligned_cols=314 Identities=12% Similarity=0.095 Sum_probs=277.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CC-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHH
Q 038395 7 DKDLYVSTSLVDLYARGGDVLSAEKLFATMP--QR-SLVSLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMID 80 (480)
Q Consensus 7 ~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~ 80 (480)
+.+..+|+.+...|.+.|++++|...|+++. .| +..+|..+..++.+.|++++|.+.|+++.+ | +...+..+..
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 143 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGN 143 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 5578899999999999999999999999886 34 456899999999999999999999999864 4 4567888999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHH
Q 038395 81 GYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160 (480)
Q Consensus 81 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 160 (480)
.+...|++++|++.|+++.+.. +.+..++..+...+...|++++|...++.+.+. .+.+...+..+...|...|+++
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~ 220 (388)
T 1w3b_A 144 LLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFD 220 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCTT
T ss_pred HHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999998852 335788999999999999999999999999985 3556788999999999999999
Q ss_pred HHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 038395 161 DARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237 (480)
Q Consensus 161 ~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 237 (480)
+|...|++... .+..+|..+...|.+.|++++|++.|+++.+.. +.+..++..+..++.+.|++++|...|+.+.+
T Consensus 221 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999987653 467899999999999999999999999999853 22467889999999999999999999999985
Q ss_pred hcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHH
Q 038395 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV 315 (480)
Q Consensus 238 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 315 (480)
. .+.+...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|+++.+|.
T Consensus 300 ~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~ 377 (388)
T 1w3b_A 300 L--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 377 (388)
T ss_dssp H--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHH
T ss_pred h--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 4 2456788999999999999999999999998 5555 4788999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCC
Q 038395 316 LLSNIYAAIGN 326 (480)
Q Consensus 316 ~l~~~~~~~g~ 326 (480)
.+...+...|+
T Consensus 378 ~lg~~~~~~~~ 388 (388)
T 1w3b_A 378 NMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTCC
T ss_pred hHHHHHHHccC
Confidence 99988877664
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.9e-23 Score=202.68 Aligned_cols=321 Identities=13% Similarity=0.089 Sum_probs=272.4
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHH
Q 038395 7 DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ---RSLVSLTTMLTCYAKQGEVAAARVLFDDMEE---KDVVCWNVMID 80 (480)
Q Consensus 7 ~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~ 80 (480)
+.++..+..+...|.+.|++++|..+|+++.+ .+..+|..+...|.+.|++++|...|+++.+ .+..+|..+..
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 34567899999999999999999999998763 4678999999999999999999999999874 35789999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHH------------HHHHHccCChHHHHHHHHHHHHhCCCCCchh
Q 038395 81 GYAQHGLANEALVLFRRMLAEKVEPNE----VTAVAV------------LSACGQIGALESGRWIHSYIENSRNIKVNVQ 144 (480)
Q Consensus 81 ~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 144 (480)
.|.+.|++++|++.|+++.+. .|+. ..+..+ ...+...|++++|...++.+.+. .+.+..
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 178 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--CVWDAE 178 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChH
Confidence 999999999999999999885 4543 455444 44488899999999999999975 456788
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHH-----
Q 038395 145 VGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD-ITFIGL----- 215 (480)
Q Consensus 145 ~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~l----- 215 (480)
++..+..+|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++... .|+. ..+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHH
Confidence 999999999999999999999998864 57889999999999999999999999999874 4443 333333
Q ss_pred -------HHHHHccCCHHHHHHHHHHhhhhcCCcCC-----ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHH
Q 038395 216 -------LSACAHAGLVNEGRRFFNTMKDEYAIEPK-----VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWG 281 (480)
Q Consensus 216 -------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 281 (480)
..++.+.|++++|..+|+.+.+. .|+ ..++..+...+.+.|++++|.+.++++ ...| +..+|.
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 333 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 78899999999999999999854 455 447889999999999999999999997 4445 689999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHH------------HHHHcC-----ChhHHHHHHHH
Q 038395 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN------------IYAAIG-----NWDGVARVRTL 336 (480)
Q Consensus 282 ~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~------------~~~~~g-----~~~~a~~~~~~ 336 (480)
.+..+|...|++++|...++++++..|.++.++..+.. .|...| +.+++.+.+++
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 99999999999999999999999999999988888884 455555 44555666655
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-21 Score=190.63 Aligned_cols=294 Identities=11% Similarity=0.053 Sum_probs=254.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038395 40 SLVSLTTMLTCYAKQGEVAAARVLFDDMEE---KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA 116 (480)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 116 (480)
+..+|..+...|.+.|++++|..+|+++.+ .+..+|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 567899999999999999999999999864 468899999999999999999999999999864 4467889999999
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCCch---hHHHHH------------HHHHHhCCCHHHHHHHHHhcCC---CChHHHH
Q 038395 117 CGQIGALESGRWIHSYIENSRNIKVNV---QVGTAL------------INMYSKCGSLKDARLVFDRVND---KDVVVWN 178 (480)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l------------i~~y~~~g~~~~A~~~f~~m~~---~~~~~~~ 178 (480)
+...|++++|...++.+.+. .+.+. ..+..+ ...|.+.|++++|...|+++.+ .+...|.
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 181 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 99999999999999999864 23344 555555 4448999999999999998764 4778999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHH------
Q 038395 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCM------ 251 (480)
Q Consensus 179 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l------ 251 (480)
.+...|.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|...|+.+.+. .|+ ...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHH
Confidence 99999999999999999999998753 346788999999999999999999999999843 455 3344444
Q ss_pred ------HHHHHHcCCHHHHHHHHHhC-CCCCC-----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHH
Q 038395 252 ------VNLLSRAGQVEEAYKLVMDM-KIEPD-----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN 319 (480)
Q Consensus 252 ------i~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 319 (480)
...|.+.|++++|.+.|+++ ...|+ ...|..+...+...|++++|...++++++..|+++.++..++.
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 78899999999999999998 44454 4578889999999999999999999999999999999999999
Q ss_pred HHHHcCChhHHHHHHHHHHhC
Q 038395 320 IYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 320 ~~~~~g~~~~a~~~~~~m~~~ 340 (480)
+|...|++++|...++++.+.
T Consensus 338 ~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcCHHHHHHHHHHHHHh
Confidence 999999999999999999874
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-20 Score=189.24 Aligned_cols=329 Identities=9% Similarity=-0.065 Sum_probs=261.2
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC------------
Q 038395 7 DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD------------ 71 (480)
Q Consensus 7 ~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~------------ 71 (480)
.||..++..+...|.+.|++++|...|+++.+ | +..+|..+..+|.+.|++++|...|+++.+.+
T Consensus 36 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 115 (514)
T 2gw1_A 36 KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLE 115 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHH
T ss_pred CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 46788888888888888888888888887652 3 45678888888888888888888887653211
Q ss_pred ----------------------------------------------------------------------HHHHHHHHHH
Q 038395 72 ----------------------------------------------------------------------VVCWNVMIDG 81 (480)
Q Consensus 72 ----------------------------------------------------------------------~~~~~~li~~ 81 (480)
...|..+...
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (514)
T 2gw1_A 116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLS 195 (514)
T ss_dssp HHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHH
Confidence 2223333333
Q ss_pred HHH---cCChHHHHHHHHHHHH-----CCCCC--------CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhH
Q 038395 82 YAQ---HGLANEALVLFRRMLA-----EKVEP--------NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQV 145 (480)
Q Consensus 82 ~~~---~g~~~~A~~~~~~m~~-----~g~~p--------d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 145 (480)
+.. .|++++|+..|+++.+ ....| +..++..+...+...|++++|...++.+.+. . |+..+
T Consensus 196 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~--~~~~~ 272 (514)
T 2gw1_A 196 NLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL-F--PRVNS 272 (514)
T ss_dssp HHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH-C--CCHHH
T ss_pred HHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-C--ccHHH
Confidence 333 7888888888888877 31122 2456777778888889999999999988876 3 23778
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 038395 146 GTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222 (480)
Q Consensus 146 ~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 222 (480)
+..+...|...|++++|...|+++.. .+..+|..+...|...|++++|+..|++..+... .+...+..+...+...
T Consensus 273 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 351 (514)
T 2gw1_A 273 YIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRE 351 (514)
T ss_dssp HHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHc
Confidence 88888999999999999999988754 3677899999999999999999999999987542 2567788888899999
Q ss_pred CCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HhHHHHHHHHHHh---cC
Q 038395 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM----KIEPD----SVLWGTLLGACRL---HG 291 (480)
Q Consensus 223 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~li~a~~~---~~ 291 (480)
|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.++++ +..++ ...|..+...+.. .|
T Consensus 352 ~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 352 NKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred CCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 99999999999988541 335778889999999999999999999887 22232 3488899999999 99
Q ss_pred ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 292 NIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
++++|...++++++..|.++.++..++.+|.+.|++++|...+++..+..
T Consensus 430 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 430 NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999987753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.3e-20 Score=184.35 Aligned_cols=329 Identities=9% Similarity=-0.030 Sum_probs=274.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHH
Q 038395 10 LYVSTSLVDLYARGGDVLSAEKLFATMP--QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQ 84 (480)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~ 84 (480)
...+-.+...|.+.|++++|...|+++. .|+..+|..+..+|.+.|++++|...|+++.+ | +..+|..+..+|.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 4456778889999999999999999986 48899999999999999999999999998764 4 56799999999999
Q ss_pred cCChHHHHHHHHHHHHCCCC------------------------------------------------------------
Q 038395 85 HGLANEALVLFRRMLAEKVE------------------------------------------------------------ 104 (480)
Q Consensus 85 ~g~~~~A~~~~~~m~~~g~~------------------------------------------------------------ 104 (480)
.|++++|+..|+++...+..
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 99999999999999776421
Q ss_pred -----------------CC-HHHHHHHHHHHHc---cCChHHHHHHHHHHHH-----hCCC-------CCchhHHHHHHH
Q 038395 105 -----------------PN-EVTAVAVLSACGQ---IGALESGRWIHSYIEN-----SRNI-------KVNVQVGTALIN 151 (480)
Q Consensus 105 -----------------pd-~~t~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~~~~-------~~~~~~~~~li~ 151 (480)
|+ ...+......+.. .|+++.|...++.+.+ .... +.+..++..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 11 2223333333333 7999999999999987 2011 334667888999
Q ss_pred HHHhCCCHHHHHHHHHhcCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 038395 152 MYSKCGSLKDARLVFDRVND--KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR 229 (480)
Q Consensus 152 ~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 229 (480)
.|...|++++|...|+++.+ |+...|..+...|...|++++|+..|+++.... +.+...+..+...+...|++++|.
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999998753 447889999999999999999999999998753 335678888999999999999999
Q ss_pred HHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038395 230 RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307 (480)
Q Consensus 230 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~ 307 (480)
..++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++.+..
T Consensus 325 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 325 KDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402 (514)
T ss_dssp HHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 999999853 2335778889999999999999999999987 3333 57788999999999999999999999999988
Q ss_pred CCCch------hHHHHHHHHHH---cCChhHHHHHHHHHHhCC
Q 038395 308 LANSG------TYVLLSNIYAA---IGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 308 ~~~~~------~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~ 341 (480)
|.++. ++..++.+|.. .|++++|...++++.+..
T Consensus 403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 87654 89999999999 999999999999987753
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-18 Score=165.31 Aligned_cols=301 Identities=12% Similarity=0.052 Sum_probs=172.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHH
Q 038395 10 LYVSTSLVDLYARGGDVLSAEKLFATMPQ---RSLVSLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYA 83 (480)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~ 83 (480)
+..+..+...+.+.|++++|...|+++.+ .+..+|..+...+...|++++|...|+++.+ | +...|..+...|.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 44555666666666666666666666532 2445566666666666666666666666542 2 4455666666666
Q ss_pred HcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCH
Q 038395 84 QHGLANEALVLFRRMLAEKVEP----NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159 (480)
Q Consensus 84 ~~g~~~~A~~~~~~m~~~g~~p----d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 159 (480)
..|++++|++.|++..+. .| +...+..+.... ....+..+...|...|++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~------------------------~~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD------------------------EMQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHTTCH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH------------------------HHHHHHHHHHHHHHccCH
Confidence 666666666666666553 33 222222221000 000011123455555555
Q ss_pred HHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 038395 160 KDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 160 ~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 236 (480)
++|.+.|+++.+ .+...|..+...|...|++++|+..|++..+.. +.+..++..+...+...|++++|...++...
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555432 244455555555555566666666555555432 2234455555555555566666666555555
Q ss_pred hhcCCcCCc-cHHH------------HHHHHHHHcCCHHHHHHHHHhC-CCCCC-H----hHHHHHHHHHHhcCChhHHH
Q 038395 237 DEYAIEPKV-EHYG------------CMVNLLSRAGQVEEAYKLVMDM-KIEPD-S----VLWGTLLGACRLHGNIALGE 297 (480)
Q Consensus 237 ~~~~~~p~~-~~~~------------~li~~~~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~li~a~~~~~~~~~a~ 297 (480)
+. .|+. ..+. .+...+.+.|++++|.+.+++. ...|+ . ..+..+...+...|++++|.
T Consensus 216 ~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 216 KL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 32 2221 1111 2255567777777777777776 22333 2 22445666777778888888
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
..++++++..|+++.++..+..+|...|++++|.+.+++..+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 8888888877777777788888888888888888888777654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.4e-19 Score=168.10 Aligned_cols=287 Identities=10% Similarity=0.022 Sum_probs=188.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C----CHHHHHH
Q 038395 7 DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEE--K----DVVCWNV 77 (480)
Q Consensus 7 ~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~----~~~~~~~ 77 (480)
+.+..++..+...|...|++++|...|+++.+ | +..+|..+...|.+.|++++|...|++..+ | +...|..
T Consensus 34 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 113 (359)
T 3ieg_A 34 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQ 113 (359)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHH
Confidence 34678899999999999999999999998763 3 668899999999999999999999999865 3 2334444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCC
Q 038395 78 MIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157 (480)
Q Consensus 78 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 157 (480)
+...+. ...+..+...+...|++++|...++.+.+. .+.+..++..+...|.+.|
T Consensus 114 l~~~~~-----------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 168 (359)
T 3ieg_A 114 LVKADE-----------------------MQRLRSQALDAFDGADYTAAITFLDKILEV--CVWDAELRELRAECFIKEG 168 (359)
T ss_dssp HHHHHH-----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHH-----------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHCC
Confidence 421100 001122223334444444444444444432 2233444444445555555
Q ss_pred CHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHH------------HHHHHHHHHc
Q 038395 158 SLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS-DIT------------FIGLLSACAH 221 (480)
Q Consensus 158 ~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t------------~~~ll~a~~~ 221 (480)
++++|...|+++.+ .+..+|..+...|...|++++|...|++..+.. |+ ... ...+...+..
T Consensus 169 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 246 (359)
T 3ieg_A 169 EPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIR 246 (359)
T ss_dssp CHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544432 234455555555555566666666665555432 22 111 1223556778
Q ss_pred cCCHHHHHHHHHHhhhhcCCcCCc-----cHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChh
Q 038395 222 AGLVNEGRRFFNTMKDEYAIEPKV-----EHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIA 294 (480)
Q Consensus 222 ~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~ 294 (480)
.|++++|...++.+.+. .|+. ..+..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|+++
T Consensus 247 ~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 323 (359)
T 3ieg_A 247 DGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYD 323 (359)
T ss_dssp TTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred cCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHH
Confidence 88888888888888754 3442 23445678888899999999988887 3344 6788889999999999999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 038395 295 LGEKIAEYLISQNLANSGTYVLLSNIYAA 323 (480)
Q Consensus 295 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (480)
+|...++++++..|++...+..+..++..
T Consensus 324 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 324 EAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 99999999999999988777777666544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-18 Score=176.52 Aligned_cols=227 Identities=11% Similarity=-0.023 Sum_probs=188.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHH
Q 038395 109 TAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYA 185 (480)
Q Consensus 109 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~ 185 (480)
++..+...+...|++++|...+..+.+. .|+...+..+...|...|++++|.+.|+++.+ .+..+|..+...|.
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 4555566677888999999999999875 45577888889999999999999999988753 46788999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHH
Q 038395 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAY 265 (480)
Q Consensus 186 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 265 (480)
..|++++|++.|++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.
T Consensus 322 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAI 398 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999998854 2245778888899999999999999999988542 334678889999999999999999
Q ss_pred HHHHhC----CCCC----CHhHHHHHHHHHHhc----------CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCh
Q 038395 266 KLVMDM----KIEP----DSVLWGTLLGACRLH----------GNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW 327 (480)
Q Consensus 266 ~~~~~m----~~~p----~~~~~~~li~a~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 327 (480)
+.++++ +..+ ....+..+...+... |++++|...++++++..|.++.++..+..+|...|++
T Consensus 399 ~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~ 478 (537)
T 3fp2_A 399 KQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKI 478 (537)
T ss_dssp HHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Confidence 999887 1111 223344555677777 9999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCC
Q 038395 328 DGVARVRTLMKEKG 341 (480)
Q Consensus 328 ~~a~~~~~~m~~~~ 341 (480)
++|.+.+++..+..
T Consensus 479 ~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 479 DEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999987754
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.5e-18 Score=158.84 Aligned_cols=285 Identities=13% Similarity=0.068 Sum_probs=210.7
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038395 39 RSLVSLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLS 115 (480)
Q Consensus 39 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 115 (480)
.+...+..+...+...|++++|.++|+++.+ | +...+..++..+.+.|++++|+.+|+++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 3555667777777777888888888877653 2 44566667777778888888888888877742 335667777777
Q ss_pred HHHccC-ChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChH
Q 038395 116 ACGQIG-ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGK 191 (480)
Q Consensus 116 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~ 191 (480)
.+...| ++++|...++.+.+. .+.+...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTL--EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTT--CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 777788 788888888887753 344566777788888888888888888877653 34566777888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcC-------CcCCccHHHHHHHHHHHcCCHHHH
Q 038395 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA-------IEPKVEHYGCMVNLLSRAGQVEEA 264 (480)
Q Consensus 192 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A 264 (480)
+|.+.|++..+.. +.+...+..+...+...|++++|...++.+.+... .+.....+..+...|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888887653 33566777788888888888888888887764321 123356788888888888888888
Q ss_pred HHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHH-HHcCCh
Q 038395 265 YKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIY-AAIGNW 327 (480)
Q Consensus 265 ~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~ 327 (480)
.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..+..++ ...|+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 8888877 2233 5677888888888899999999999998888888888888888877 444543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.3e-18 Score=164.21 Aligned_cols=280 Identities=11% Similarity=-0.040 Sum_probs=220.4
Q ss_pred HHhcCCHHHHHH-HHhhcCC--C-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 038395 51 YAKQGEVAAARV-LFDDMEE--K-----DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122 (480)
Q Consensus 51 ~~~~g~~~~A~~-~f~~~~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~ 122 (480)
+.-.|++++|.. .|++... | +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334578888888 8876543 1 34568888889999999999999999998863 4467788888888999999
Q ss_pred hHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChHHHHH---------------HHHHH
Q 038395 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK---DVVVWNS---------------MIVGY 184 (480)
Q Consensus 123 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~---------------li~~~ 184 (480)
+++|...++.+.+. .+.+..++..+...|...|++++|.+.|+++... +...+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLEL--KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 99999999998875 3557788888999999999999999999877542 2222221 23334
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHH
Q 038395 185 AMHGFGKDALQLFNEMCRIRLKP-SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263 (480)
Q Consensus 185 ~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 263 (480)
...|++++|+..|+++.+..... +..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence 48899999999999998854221 4788899999999999999999999998854 13346789999999999999999
Q ss_pred HHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-----------chhHHHHHHHHHHcCChhHH
Q 038395 264 AYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN-----------SGTYVLLSNIYAAIGNWDGV 330 (480)
Q Consensus 264 A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a 330 (480)
|.+.|+++ ...| +..+|..+...+...|++++|...++++++..|.+ ..+|..+..+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999987 3344 57889999999999999999999999999988776 77899999999999999999
Q ss_pred HHHHH
Q 038395 331 ARVRT 335 (480)
Q Consensus 331 ~~~~~ 335 (480)
..+++
T Consensus 350 ~~~~~ 354 (368)
T 1fch_A 350 GAADA 354 (368)
T ss_dssp HHHHT
T ss_pred HHhHH
Confidence 98876
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-17 Score=155.04 Aligned_cols=265 Identities=11% Similarity=0.036 Sum_probs=228.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHH
Q 038395 70 KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTAL 149 (480)
Q Consensus 70 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 149 (480)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..++..+.+. .+.+...+..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHH
Confidence 456678888899999999999999999998763 335556777888889999999999999999985 45577889999
Q ss_pred HHHHHhCC-CHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 038395 150 INMYSKCG-SLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225 (480)
Q Consensus 150 i~~y~~~g-~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 225 (480)
...|...| ++++|.+.|++... .+...|..+...|...|++++|++.|++..+... .+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999998765 3677899999999999999999999999988642 2456677788999999999
Q ss_pred HHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CC----------CCCHhHHHHHHHHHHhcCChh
Q 038395 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KI----------EPDSVLWGTLLGACRLHGNIA 294 (480)
Q Consensus 226 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----------~p~~~~~~~li~a~~~~~~~~ 294 (480)
++|...++.+.+. .+.+...+..+...|.+.|++++|...+++. .. ..+..+|..+...+...|+++
T Consensus 176 ~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999999843 2344678899999999999999999999887 11 234678999999999999999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 295 LGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 295 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
+|...++++++..|.++.++..+..+|...|++++|.+.+++..+.
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999877543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-19 Score=171.03 Aligned_cols=282 Identities=10% Similarity=0.048 Sum_probs=136.8
Q ss_pred HhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038395 21 ARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100 (480)
Q Consensus 21 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 100 (480)
-+.|++++|.++++++..|+ +|..|+.++.+.|++++|++.|.+. +|...|..++.++.+.|++++|++.++..++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 37788999999999997664 9999999999999999999999765 5777999999999999999999997777666
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHH
Q 038395 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180 (480)
Q Consensus 101 ~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l 180 (480)
. .+++.+.+.++.+|.+.|+++++.++++ .|+..+++.+.+.|...|.+++|...|..+ ..|..|
T Consensus 90 ~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~L 154 (449)
T 1b89_A 90 K--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 154 (449)
T ss_dssp ---------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT-----TCHHHH
T ss_pred h--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHH
Confidence 3 5567889999999999999999887773 367779999999999999999999999988 489999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCC
Q 038395 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260 (480)
Q Consensus 181 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 260 (480)
+.++.+.|++++|++.++++ .+..+|..++.+|...|+++.|......+ ...+.....++..|.+.|+
T Consensus 155 A~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGY 222 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhhHHHHHHHHHHCCC
Confidence 99999999999999999998 27899999999999999999996544432 2334446679999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc--CChhHHHHHHHHHHHcCC-----CCchhHHHHHHHHHHcCChhHHH
Q 038395 261 VEEAYKLVMDM-KIEP-DSVLWGTLLGACRLH--GNIALGEKIAEYLISQNL-----ANSGTYVLLSNIYAAIGNWDGVA 331 (480)
Q Consensus 261 ~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~--~~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~ 331 (480)
+++|..+++.. +..+ ....|+-|.-++++. +++.+..+.|..-+...| .++..|.-+...|.+.++++.|.
T Consensus 223 ~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 223 FEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 99999999887 6554 477888887777765 344445555443333444 46678999999999999999988
Q ss_pred HH
Q 038395 332 RV 333 (480)
Q Consensus 332 ~~ 333 (480)
.+
T Consensus 303 ~t 304 (449)
T 1b89_A 303 IT 304 (449)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=6e-18 Score=162.41 Aligned_cols=261 Identities=11% Similarity=-0.063 Sum_probs=208.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHH
Q 038395 71 DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI 150 (480)
Q Consensus 71 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 150 (480)
+...|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|...++.+.+. .+.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence 45568888888899999999999999888753 446778888888888999999999999988875 345677888889
Q ss_pred HHHHhCCCHHHHHHHHHhcCCC---C----------hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 038395 151 NMYSKCGSLKDARLVFDRVNDK---D----------VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK-PSDITFIGLL 216 (480)
Q Consensus 151 ~~y~~~g~~~~A~~~f~~m~~~---~----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll 216 (480)
..|.+.|++++|...|+++.+. + ...+..+...+...|++++|++.|+++.+.... ++..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999887642 1 223344578889999999999999999886422 2578899999
Q ss_pred HHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChh
Q 038395 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIA 294 (480)
Q Consensus 217 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~ 294 (480)
..+...|++++|...|+.+.+.. +.+...+..+...|.+.|++++|.+.|+++ ...| +..+|..+..++...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 99999999999999999988541 345778999999999999999999999987 4445 4888999999999999999
Q ss_pred HHHHHHHHHHHcCCC------------CchhHHHHHHHHHHcCChhHHHHHHHH
Q 038395 295 LGEKIAEYLISQNLA------------NSGTYVLLSNIYAAIGNWDGVARVRTL 336 (480)
Q Consensus 295 ~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 336 (480)
+|...++++++..|. +...+..+..++...|+.+.+.++.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999997765 356889999999999999998877643
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-16 Score=162.00 Aligned_cols=323 Identities=12% Similarity=0.055 Sum_probs=250.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHH
Q 038395 10 LYVSTSLVDLYARGGDVLSAEKLFATMPQ---RSLVSLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYA 83 (480)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~ 83 (480)
...+..+...+.+.|++++|...|+++.+ .+..+|..+...|.+.|++++|++.|+++.+ | +..+|..+...|.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 45678888999999999999999998763 4678899999999999999999999999764 3 6778999999999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhC-----CCCCchh--------------
Q 038395 84 QHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSR-----NIKVNVQ-------------- 144 (480)
Q Consensus 84 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~-------------- 144 (480)
..|++++|++.|+.+ . ..|+... ..+..+...+....+...++.+.... ...|+..
T Consensus 105 ~~g~~~~A~~~~~~~-~--~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVL-S--LNGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHHHH-h--cCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 999999999999633 3 2333221 12233344445566777776664310 0111111
Q ss_pred ----------------HHHHHHHHHHhC--------CCHHHHHHHHHhcCCC---C-------hHHHHHHHHHHHhcCCh
Q 038395 145 ----------------VGTALINMYSKC--------GSLKDARLVFDRVNDK---D-------VVVWNSMIVGYAMHGFG 190 (480)
Q Consensus 145 ----------------~~~~li~~y~~~--------g~~~~A~~~f~~m~~~---~-------~~~~~~li~~~~~~g~~ 190 (480)
....+...|... |++++|..+|+++.+. + ..+|..+...+...|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 233333333322 4789999999988753 2 23577777888999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHh
Q 038395 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMD 270 (480)
Q Consensus 191 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 270 (480)
++|+..|++..+. .|+...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.+++
T Consensus 260 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 260 LDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999999885 5667888889999999999999999999998542 33477899999999999999999999998
Q ss_pred C-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 271 M-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 271 m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
. ...| +...|..+...+...|++++|...++++++..|.++..+..+..+|...|++++|.+.++++.+..
T Consensus 336 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 336 AQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 8 3334 467899999999999999999999999999999999999999999999999999999999987654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.6e-16 Score=143.20 Aligned_cols=269 Identities=9% Similarity=-0.036 Sum_probs=205.6
Q ss_pred HHhcCCHHHHHHHHhhcCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 038395 51 YAKQGEVAAARVLFDDMEEKD----VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126 (480)
Q Consensus 51 ~~~~g~~~~A~~~f~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a 126 (480)
....|++..|+..++.....+ ....-.+..+|...|++++|+..++. . -+|+..++..+...+...++.+.|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHH
Confidence 445678888888877765432 22445567788888888888876644 1 355666777777788888888888
Q ss_pred HHHHHHHHHhCCC-CCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038395 127 RWIHSYIENSRNI-KVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL 205 (480)
Q Consensus 127 ~~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 205 (480)
.+.++.+... +. +.+...+..+...|...|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+..
T Consensus 85 ~~~l~~ll~~-~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 160 (291)
T 3mkr_A 85 VAELDREMSR-SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD- 160 (291)
T ss_dssp HHHHHHHHHS-CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhc-ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence 8888887765 53 44666777788899999999999999998 5678899999999999999999999999998863
Q ss_pred CCCHHHH---HHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHH
Q 038395 206 KPSDITF---IGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLW 280 (480)
Q Consensus 206 ~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 280 (480)
|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..+|.+.|++++|.+.|++. ...| ++.+|
T Consensus 161 -p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 161 -EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred -cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 554321 22334445669999999999999965 3456788999999999999999999999997 4445 57889
Q ss_pred HHHHHHHHhcCChhH-HHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHH
Q 038395 281 GTLLGACRLHGNIAL-GEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVR 334 (480)
Q Consensus 281 ~~li~a~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 334 (480)
..++..+...|+.++ +.++++++++..|+++.+ .+...+.+.++++..-|
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHHc
Confidence 999999999999865 678999999999998744 34455556666655433
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=8e-19 Score=167.13 Aligned_cols=250 Identities=14% Similarity=0.112 Sum_probs=118.1
Q ss_pred hcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 038395 53 KQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSY 132 (480)
Q Consensus 53 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~ 132 (480)
+.|++++|.+.++++..|+ +|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6889999999999997664 999999999999999999999965 36888999999999999999999998888
Q ss_pred HHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 038395 133 IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF 212 (480)
Q Consensus 133 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 212 (480)
..+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..|
T Consensus 87 ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 87 ARKK---ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHh---CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 7763 45578899999999999999999988864 77789999999999999999999999977 378
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCC
Q 038395 213 IGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292 (480)
Q Consensus 213 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~ 292 (480)
..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+...|+. ...++..|.+.|.
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~ 222 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGY 222 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCC
Confidence 99999999999999999999877 25789999999999999999997777665544543 4568899999999
Q ss_pred hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHc--CChhHHHHHH
Q 038395 293 IALGEKIAEYLISQNLANSGTYVLLSNIYAAI--GNWDGVARVR 334 (480)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~ 334 (480)
+++|..+++..+.+++.....|.-|..+|++- ++..+..+.|
T Consensus 223 ~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 223 FEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999988889999998888876 3344444443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-16 Score=153.71 Aligned_cols=275 Identities=9% Similarity=0.020 Sum_probs=203.3
Q ss_pred CHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHH-HHHHHHHCCC-CC--CHHHHHHHHHHHHccCChHHHHHHHH
Q 038395 56 EVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALV-LFRRMLAEKV-EP--NEVTAVAVLSACGQIGALESGRWIHS 131 (480)
Q Consensus 56 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~g~-~p--d~~t~~~ll~~~~~~~~~~~a~~~~~ 131 (480)
.++.+...|+.+...+.. ++...|++++|++ .|++...... .| +...+..+...+...|++++|...++
T Consensus 16 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 88 (368)
T 1fch_A 16 FWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFE 88 (368)
T ss_dssp -------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444555555443322 3445688999998 8887654311 11 34567788899999999999999999
Q ss_pred HHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 038395 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208 (480)
Q Consensus 132 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 208 (480)
.+.+. .+.+..++..+...|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|++.|+++.......
T Consensus 89 ~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~- 165 (368)
T 1fch_A 89 AAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY- 165 (368)
T ss_dssp HHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-
Confidence 99974 466788999999999999999999999998753 478899999999999999999999999998854221
Q ss_pred HHHHH-H--------------HHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 038395 209 DITFI-G--------------LLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-K 272 (480)
Q Consensus 209 ~~t~~-~--------------ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 272 (480)
...+. . .+..+...|++++|...++.+.+...-.++..++..+...|.+.|++++|...++++ .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 166 AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11111 1 233344889999999999999864222224778899999999999999999999987 3
Q ss_pred CCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 273 IEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 273 ~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
..| +..+|..+...+...|++++|...++++++..|.++.++..++.+|.+.|++++|...+++..+.
T Consensus 246 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 246 VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344 57899999999999999999999999999999999999999999999999999999999998764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-16 Score=148.79 Aligned_cols=271 Identities=10% Similarity=-0.010 Sum_probs=177.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 038395 43 SLTTMLTCYAKQGEVAAARVLFDDMEE---KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119 (480)
Q Consensus 43 ~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~ 119 (480)
.|..+...+.+.|++++|..+|+++.+ .+...|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 344555555555555555555555432 234455555555555555555555555555431 2234445555555555
Q ss_pred cCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHH-HH-HHHhcCChHHHHHHH
Q 038395 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM-IV-GYAMHGFGKDALQLF 197 (480)
Q Consensus 120 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l-i~-~~~~~g~~~~A~~l~ 197 (480)
.|++++|...++.+.+. .+.+...+..+.... ++......+ .. .+...|++++|.+.+
T Consensus 102 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 161 (327)
T 3cv0_A 102 EHNANAALASLRAWLLS--QPQYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTLL 161 (327)
T ss_dssp TTCHHHHHHHHHHHHHT--STTTTTC--------------------------------------CCTTSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHHH
Confidence 55555555555555442 111111111110000 000011111 22 366778889999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-
Q 038395 198 NEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP- 275 (480)
Q Consensus 198 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p- 275 (480)
+++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...|
T Consensus 162 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 238 (327)
T 3cv0_A 162 HAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG 238 (327)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 9988754 336778888888999999999999999988853 1334677888999999999999999999887 3334
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC------------CchhHHHHHHHHHHcCChhHHHHHHHHH
Q 038395 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA------------NSGTYVLLSNIYAAIGNWDGVARVRTLM 337 (480)
Q Consensus 276 ~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 337 (480)
+..+|..+...+...|++++|...++++++..|. ++.++..+..+|...|++++|..++++.
T Consensus 239 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 239 YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5788999999999999999999999999999888 6778999999999999999999988643
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.5e-17 Score=155.14 Aligned_cols=231 Identities=9% Similarity=-0.005 Sum_probs=194.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHH
Q 038395 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIV 182 (480)
Q Consensus 106 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~ 182 (480)
+...+..+...+.+.|++++|..+++.+.+. .+.+..++..+...|.+.|++++|...|+++.+ .+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4456888899999999999999999999985 466788999999999999999999999998764 46789999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHH
Q 038395 183 GYAMHGFGKDALQLFNEMCRIRLKPS-----------DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251 (480)
Q Consensus 183 ~~~~~g~~~~A~~l~~~m~~~g~~p~-----------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 251 (480)
.|...|++++|++.|+++.+.. |+ ...+..+...+...|++++|..+++.+.+...-.++...+..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999998742 32 2233445778899999999999999998653222257889999
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhH
Q 038395 252 VNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDG 329 (480)
Q Consensus 252 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 329 (480)
...|.+.|++++|.+.|++. ...| +..+|..+..++...|++++|...++++++..|.++.++..+..+|...|++++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999998 3334 588999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 038395 330 VARVRTLMKEK 340 (480)
Q Consensus 330 a~~~~~~m~~~ 340 (480)
|...+++..+.
T Consensus 300 A~~~~~~al~~ 310 (365)
T 4eqf_A 300 AVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998764
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.6e-18 Score=175.09 Aligned_cols=132 Identities=14% Similarity=0.136 Sum_probs=112.4
Q ss_pred CCCchhHHHHHHHHHHhCCCHHHHHHHHHhcC-------CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 038395 139 IKVNVQVGTALINMYSKCGSLKDARLVFDRVN-------DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211 (480)
Q Consensus 139 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 211 (480)
...-..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 44456789999999999999999999997764 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCC-HHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 212 FIGLLSACAHAGL-VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 212 ~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
|+++|.++++.|+ .++|.++|++|.+. |+.||..+|++++....+.+-++.+.++..++
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999999987 47889999999965 99999999999998877775555554443333
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.8e-18 Score=173.06 Aligned_cols=158 Identities=16% Similarity=0.151 Sum_probs=129.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038395 42 VSLTTMLTCYAKQGEVAAARVLFDDME-------EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVL 114 (480)
Q Consensus 42 ~~~~~li~~~~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 114 (480)
.+||+||.+|+++|++++|.++|+.|. .||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 589999999999999999999998764 5899999999999999999999999999999999999999999999
Q ss_pred HHHHccCCh-HHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC-----ChHHHHHHHHHHHhcC
Q 038395 115 SACGQIGAL-ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-----DVVVWNSMIVGYAMHG 188 (480)
Q Consensus 115 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g 188 (480)
.++++.|.. +.|.+++++|.+. |+.||..+|+++++.+.+.+-++...+++..+..+ .+.+.+.|.+.|.+.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 999999985 7899999999999 99999999999998887765555555554433321 1334444556666554
Q ss_pred C---------hHHHHHHHHHH
Q 038395 189 F---------GKDALQLFNEM 200 (480)
Q Consensus 189 ~---------~~~A~~l~~~m 200 (480)
. .++-.++|++-
T Consensus 287 ~~s~pk~~~~~~~L~~~~~~Q 307 (1134)
T 3spa_A 287 RVSYPKLHLPLKTLQCLFEKQ 307 (1134)
T ss_dssp CCCCCCCSSCHHHHHHHHHHH
T ss_pred CCcCccccCCHHHHHHHHHHH
Confidence 2 24555566543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.3e-15 Score=147.63 Aligned_cols=334 Identities=12% Similarity=-0.018 Sum_probs=227.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCC-----------CC-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------
Q 038395 9 DLYVSTSLVDLYARGGDVLSAEKLFATMP-----------QR-SLVSLTTMLTCYAKQGEVAAARVLFDDMEE------- 69 (480)
Q Consensus 9 d~~~~~~ll~~~~~~g~~~~A~~~~~~m~-----------~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~------- 69 (480)
....||.|...|...|+.++|++.|++.. .+ ..++|+.+...|...|++++|...|++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 45689999999999999999999988652 12 357899999999999999999998887642
Q ss_pred ---C-CHHHHHHHHHHHHHc--CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH---HHccCChHHHHHHHHHHHHhCCC
Q 038395 70 ---K-DVVCWNVMIDGYAQH--GLANEALVLFRRMLAEKVEPN-EVTAVAVLSA---CGQIGALESGRWIHSYIENSRNI 139 (480)
Q Consensus 70 ---~-~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~ 139 (480)
+ ...+++.+..++... +++++|++.|++..+. .|+ ...+..+..+ +...++.++|.+.++...+. .
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~ 205 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--N 205 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--C
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--C
Confidence 1 345677666666654 5699999999999885 454 4445444444 34567778888989888875 3
Q ss_pred CCchhHHHHHHHHHHhC----CCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHH
Q 038395 140 KVNVQVGTALINMYSKC----GSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS-DIT 211 (480)
Q Consensus 140 ~~~~~~~~~li~~y~~~----g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t 211 (480)
+.+..++..+...+... |++++|.+.|++... .+..+|..+...|...|++++|++.|++..+. .|+ ..+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHH
Confidence 44566666666555544 678899999987643 46778999999999999999999999999875 343 455
Q ss_pred HHHHHHHHHcc-------------------CCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 038395 212 FIGLLSACAHA-------------------GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM- 271 (480)
Q Consensus 212 ~~~ll~a~~~~-------------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 271 (480)
+..+..++... +..++|...++...+.. +.+...+..+...|...|++++|.+.|++.
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL 361 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN--DNLFRVCSILASLHALADQYEEAEYYFQKEF 361 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC--TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC--CchhhhhhhHHHHHHHhccHHHHHHHHHHHH
Confidence 55554444321 33567777777776431 334677889999999999999999999987
Q ss_pred CCCCCHhH----HHHHHH-HHHhcCChhHHHHHHHHHHHc------------------------CCCCchhHHHHHHHHH
Q 038395 272 KIEPDSVL----WGTLLG-ACRLHGNIALGEKIAEYLISQ------------------------NLANSGTYVLLSNIYA 322 (480)
Q Consensus 272 ~~~p~~~~----~~~li~-a~~~~~~~~~a~~~~~~~~~~------------------------~~~~~~~~~~l~~~~~ 322 (480)
...|+... +..+.. .....|+.++|...++++++. +|.++.+|..|..+|.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~ 441 (472)
T 4g1t_A 362 SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQE 441 (472)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44454332 223322 234668888888888777654 5677789999999999
Q ss_pred HcCChhHHHHHHHHHHhCCCccCCceee
Q 038395 323 AIGNWDGVARVRTLMKEKGVQKEPGCSS 350 (480)
Q Consensus 323 ~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 350 (480)
..|++++|.+.|++..+.+-......+|
T Consensus 442 ~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 442 LNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHCC----------------------
T ss_pred HcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 9999999999999998876543334444
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-15 Score=141.14 Aligned_cols=247 Identities=13% Similarity=0.081 Sum_probs=203.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhC
Q 038395 79 IDGYAQHGLANEALVLFRRMLAEKVEPNE--VTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156 (480)
Q Consensus 79 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 156 (480)
|.-....|++.+|+..+++... ..|+. .....+.+++...|+++.|...++. .-+|+...+..+...|...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcCC
Confidence 3445678999999999887654 34543 3556678899999999999875533 3466788889999999999
Q ss_pred CCHHHHHHHHHhcC----CC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 038395 157 GSLKDARLVFDRVN----DK-DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231 (480)
Q Consensus 157 g~~~~A~~~f~~m~----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 231 (480)
|+.++|.+.|+++. .| +...+..+...|.+.|++++|++.|++ ..+...+..+...+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999864 24 566788888999999999999999987 45778888999999999999999999
Q ss_pred HHHhhhhcCCcCCccHH---HHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038395 232 FNTMKDEYAIEPKVEHY---GCMVNLLSRAGQVEEAYKLVMDM--KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306 (480)
Q Consensus 232 ~~~m~~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~ 306 (480)
|+.+.+. .|+.... ..++..+...|++++|..+|+++ ..+.++..|+.+..++...|++++|+..++++++.
T Consensus 153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999854 4664321 22334455569999999999998 22346889999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHcCChhH-HHHHHHHHHhCC
Q 038395 307 NLANSGTYVLLSNIYAAIGNWDG-VARVRTLMKEKG 341 (480)
Q Consensus 307 ~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~ 341 (480)
+|+++.++..++..+...|+.++ +.++++++.+..
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999976 578888887654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-15 Score=143.30 Aligned_cols=254 Identities=12% Similarity=0.040 Sum_probs=182.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHH
Q 038395 9 DLYVSTSLVDLYARGGDVLSAEKLFATMPQ---RSLVSLTTMLTCYAKQGEVAAARVLFDDMEE---KDVVCWNVMIDGY 82 (480)
Q Consensus 9 d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 82 (480)
+...+..+...+.+.|++++|..+|+++.+ .+..+|..+...+.+.|++++|...|+++.+ .+..+|..+...|
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 445567788899999999999999998753 3667899999999999999999999998764 3678899999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCH-HHHHHH--------------HH-HHHccCChHHHHHHHHHHHHhCCCCCchhHH
Q 038395 83 AQHGLANEALVLFRRMLAEKVEPNE-VTAVAV--------------LS-ACGQIGALESGRWIHSYIENSRNIKVNVQVG 146 (480)
Q Consensus 83 ~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (480)
...|++++|++.|+++.... |+. ..+..+ .. .+...|++++|...+..+.+. .+.+..++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 175 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQLH 175 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHHH
Confidence 99999999999999998853 332 222222 11 256667778888888877764 34466677
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 038395 147 TALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223 (480)
Q Consensus 147 ~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 223 (480)
..+...|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 7777777777777777777776542 355667777777777777777777777776642 224556666677777777
Q ss_pred CHHHHHHHHHHhhhhcCCcCC-------------ccHHHHHHHHHHHcCCHHHHHHHHHh
Q 038395 224 LVNEGRRFFNTMKDEYAIEPK-------------VEHYGCMVNLLSRAGQVEEAYKLVMD 270 (480)
Q Consensus 224 ~~~~a~~~~~~m~~~~~~~p~-------------~~~~~~li~~~~~~g~~~~A~~~~~~ 270 (480)
++++|...++.+.+. .|+ ...+..+..+|.+.|++++|..++++
T Consensus 255 ~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp CHHHHHHHHHHHHHH---HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHh---CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 777777777766632 232 44555566666666666666666554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-13 Score=138.21 Aligned_cols=303 Identities=10% Similarity=-0.020 Sum_probs=154.0
Q ss_pred cCChHHHHHHHhhCCC-CChhHHHHHHHHHHh----cCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHH----cCChHHHH
Q 038395 23 GGDVLSAEKLFATMPQ-RSLVSLTTMLTCYAK----QGEVAAARVLFDDMEEK-DVVCWNVMIDGYAQ----HGLANEAL 92 (480)
Q Consensus 23 ~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~ 92 (480)
.++.++|...|++..+ .+..++..|...|.. .+++++|...|++..++ +..++..|...|.. .+++++|+
T Consensus 92 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 4444444444444322 233334444444443 34444444444443322 33344444444444 34444444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHh----CCCHHHHHH
Q 038395 93 VLFRRMLAEKVEPNEVTAVAVLSACGQ----IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK----CGSLKDARL 164 (480)
Q Consensus 93 ~~~~~m~~~g~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~ 164 (480)
+.|++..+.| +...+..+...+.. .++.++|...+....+. + +...+..+..+|.. .+++++|.+
T Consensus 172 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~g~g~~~~~~~A~~ 244 (490)
T 2xm6_A 172 EWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-G---DELGQLHLADMYYFGIGVTQDYTQSRV 244 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 4444444432 33344444444443 44555555555544443 2 23344444444443 455555555
Q ss_pred HHHhcCC-CChHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHH
Q 038395 165 VFDRVND-KDVVVWNSMIVGYAM----HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA-----GLVNEGRRFFNT 234 (480)
Q Consensus 165 ~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~ 234 (480)
.|++..+ .+...+..+...|.. .++.++|++.|++..+.| +...+..+...+... ++.++|...|+.
T Consensus 245 ~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 245 LFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 5554433 244444445555554 555666666666555443 233444444444444 566666666666
Q ss_pred hhhhcCCcCCccHHHHHHHHHHHcC---CHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 038395 235 MKDEYAIEPKVEHYGCMVNLLSRAG---QVEEAYKLVMDMKIEPDSVLWGTLLGACRL----HGNIALGEKIAEYLISQN 307 (480)
Q Consensus 235 m~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~li~a~~~----~~~~~~a~~~~~~~~~~~ 307 (480)
..+. .+...+..|...|.+.| ++++|.++|++.-...++..+..|...|.. .+++++|...++++.+.+
T Consensus 322 a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 322 SAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 5532 12344555555555544 566666666665112355666666666666 667777777777766654
Q ss_pred CCCchhHHHHHHHHHH----cCChhHHHHHHHHHHhCC
Q 038395 308 LANSGTYVLLSNIYAA----IGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 308 ~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 341 (480)
++.++..|..+|.. .++.++|...|++..+.+
T Consensus 398 --~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 398 --LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 34566667777766 677777777777766655
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-13 Score=136.78 Aligned_cols=319 Identities=13% Similarity=0.011 Sum_probs=267.0
Q ss_pred CChhHHHHHHHHHHh----cCChHHHHHHHhhCCC-CChhHHHHHHHHHHh----cCCHHHHHHHHhhcCCC-CHHHHHH
Q 038395 8 KDLYVSTSLVDLYAR----GGDVLSAEKLFATMPQ-RSLVSLTTMLTCYAK----QGEVAAARVLFDDMEEK-DVVCWNV 77 (480)
Q Consensus 8 ~d~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~f~~~~~~-~~~~~~~ 77 (480)
.|+..+..|...|.. .++++.|...|++..+ .+..++..|...|.. .++.++|.+.|++..++ +...+..
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~ 116 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQN 116 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 366777888888888 8999999999998654 477888999999998 99999999999997754 6778888
Q ss_pred HHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCCCchhHHHHH
Q 038395 78 MIDGYAQ----HGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ----IGALESGRWIHSYIENSRNIKVNVQVGTAL 149 (480)
Q Consensus 78 li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 149 (480)
|...|.. .+++++|++.|++..+.| +...+..+...+.. .++.++|.+.++...+. + +...+..|
T Consensus 117 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-~---~~~a~~~L 189 (490)
T 2xm6_A 117 LGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-G---NVWSCNQL 189 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHH
Confidence 9999998 889999999999998876 56777778888876 78999999999999876 4 67788889
Q ss_pred HHHHHh----CCCHHHHHHHHHhcCC-CChHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038395 150 INMYSK----CGSLKDARLVFDRVND-KDVVVWNSMIVGYAM----HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220 (480)
Q Consensus 150 i~~y~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 220 (480)
..+|.. .+++++|.+.|++..+ .+..++..+...|.. .+++++|+.+|++..+.| +...+..+...+.
T Consensus 190 g~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 266 (490)
T 2xm6_A 190 GYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILE 266 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 999998 8999999999998765 467788888888886 789999999999998764 4556666666777
Q ss_pred c----cCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHc-----CCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcC
Q 038395 221 H----AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRA-----GQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291 (480)
Q Consensus 221 ~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~ 291 (480)
. .++.++|..+|+...+. -+...+..|...|... +++++|..+|++.-...+...+..|...+...|
T Consensus 267 ~g~~~~~d~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 267 QGLAGAKEPLKALEWYRKSAEQ----GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLG 342 (490)
T ss_dssp HTTTSSCCHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Confidence 6 89999999999998743 2455777788888887 899999999998822245677788888887756
Q ss_pred ---ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH----cCChhHHHHHHHHHHhCCC
Q 038395 292 ---NIALGEKIAEYLISQNLANSGTYVLLSNIYAA----IGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 292 ---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 342 (480)
+.++|...++++.+. .++..+..|..+|.. .+++++|.+.+++..+.|.
T Consensus 343 ~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~ 398 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL 398 (490)
T ss_dssp CHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred CcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC
Confidence 889999999999987 456789999999999 8999999999999988763
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=5.6e-14 Score=141.87 Aligned_cols=329 Identities=10% Similarity=0.012 Sum_probs=234.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCHHHHHHHHHH
Q 038395 7 DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEE--KDVVCWNVMIDG 81 (480)
Q Consensus 7 ~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~ 81 (480)
+-|..+|..++. +.+.|+++.|+.+|+++.+ | +...|...+..+.+.|++++|..+|++... |++..|...+..
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSY 88 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 346778999998 4788999999999999865 4 556899999999999999999999999875 777788877753
Q ss_pred -HHHcCChHHHHH----HHHHHHHC-CCCC-CHHHHHHHHHHHHc---------cCChHHHHHHHHHHHHhCCCCCchhH
Q 038395 82 -YAQHGLANEALV----LFRRMLAE-KVEP-NEVTAVAVLSACGQ---------IGALESGRWIHSYIENSRNIKVNVQV 145 (480)
Q Consensus 82 -~~~~g~~~~A~~----~~~~m~~~-g~~p-d~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~ 145 (480)
....|+.++|.+ +|++.... |..| +...|...+....+ .|+++.|..+|+...+. ........
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~~~~~ 167 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMINIEQL 167 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTTHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhhHHHH
Confidence 345577766654 66666542 5444 34555555554433 56777777777777653 21111122
Q ss_pred HHHHHHHH-------------HhCCCHH----------------------------------------------------
Q 038395 146 GTALINMY-------------SKCGSLK---------------------------------------------------- 160 (480)
Q Consensus 146 ~~~li~~y-------------~~~g~~~---------------------------------------------------- 160 (480)
|....... .+.++++
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 22111100 0011122
Q ss_pred --------HHHHHHHhcCC---CChHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHHcCCCC-CHHHHHH
Q 038395 161 --------DARLVFDRVND---KDVVVWNSMIVGYAM-------HGFGK-------DALQLFNEMCRIRLKP-SDITFIG 214 (480)
Q Consensus 161 --------~A~~~f~~m~~---~~~~~~~~li~~~~~-------~g~~~-------~A~~l~~~m~~~g~~p-~~~t~~~ 214 (480)
.|..+|++... .+...|..++..+.+ .|+.+ +|..+|++..+. +.| +...+..
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~ 326 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFA 326 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHH
Confidence 33344444432 255677777777765 68876 899999988752 234 4677888
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhcCCcCCc--cHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHH-HHh
Q 038395 215 LLSACAHAGLVNEGRRFFNTMKDEYAIEPKV--EHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGTLLGA-CRL 289 (480)
Q Consensus 215 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~a-~~~ 289 (480)
++..+.+.|++++|..+|+.+.+ +.|+. ..|..++..+.+.|++++|.++|++. ...|+ ...|...... +..
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 88888999999999999999985 35543 47888888888999999999999988 43443 2333222222 346
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 290 HGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
.|+.+.|..+|+++++..|+++..+..++..+.+.|+.++|..+|++....+
T Consensus 404 ~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999999999998764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-13 Score=136.85 Aligned_cols=328 Identities=10% Similarity=0.049 Sum_probs=238.0
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CChhHHHHHHHHH-HhcCCHHHHHH----HHhhcC-----C-CCH
Q 038395 6 LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ--RSLVSLTTMLTCY-AKQGEVAAARV----LFDDME-----E-KDV 72 (480)
Q Consensus 6 ~~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~-~~~g~~~~A~~----~f~~~~-----~-~~~ 72 (480)
.+.+...|..++..+.+.|+++.|+.+|++... |++..|...+... ...|+.+.|.+ +|+... . ++.
T Consensus 42 ~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~ 121 (530)
T 2ooe_A 42 FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSY 121 (530)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCH
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccH
Confidence 345677899999999999999999999999864 7777787777533 34566665554 666542 1 356
Q ss_pred HHHHHHHHHHHH---------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-------------HccCCh-------
Q 038395 73 VCWNVMIDGYAQ---------HGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC-------------GQIGAL------- 123 (480)
Q Consensus 73 ~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~-------------~~~~~~------- 123 (480)
..|...+....+ .|++++|..+|++.++....+....|....... ...+++
T Consensus 122 ~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~ 201 (530)
T 2ooe_A 122 QIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVA 201 (530)
T ss_dssp HHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHH
Confidence 678877776554 678888888888887621111112222111100 000111
Q ss_pred -----------------------------------------------------HHHHHHHHHHHHhCCCCCchhHHHHHH
Q 038395 124 -----------------------------------------------------ESGRWIHSYIENSRNIKVNVQVGTALI 150 (480)
Q Consensus 124 -----------------------------------------------------~~a~~~~~~~~~~~~~~~~~~~~~~li 150 (480)
+.+..++++.... .+.+..+|..++
T Consensus 202 ~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~~~~ 279 (530)
T 2ooe_A 202 KEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAA 279 (530)
T ss_dssp HHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 1344455555542 344667777777
Q ss_pred HHHHh-------CCCHH-------HHHHHHHhcCC---C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--H
Q 038395 151 NMYSK-------CGSLK-------DARLVFDRVND---K-DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD--I 210 (480)
Q Consensus 151 ~~y~~-------~g~~~-------~A~~~f~~m~~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~ 210 (480)
..+.+ .|+++ +|..+|++..+ | +...|..++..+.+.|++++|..+|+++.+. .|+. .
T Consensus 280 ~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 357 (530)
T 2ooe_A 280 QYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTL 357 (530)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHH
T ss_pred HHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchH
Confidence 77775 79987 99999998764 3 5789999999999999999999999999984 5543 4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHH-HHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHH
Q 038395 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNL-LSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGA 286 (480)
Q Consensus 211 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~-~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a 286 (480)
.|...+..+.+.|+.++|..+|+...+. .|+ ...|...... +...|++++|..+|++. ...| ++..|..++..
T Consensus 358 ~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~ 434 (530)
T 2ooe_A 358 VYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDY 434 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 7888888888999999999999999853 343 2333322222 34689999999999987 3334 58899999999
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCch----hHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 287 CRLHGNIALGEKIAEYLISQNLANSG----TYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 287 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
+...|+.+.|..+|++++...|.++. .|...+......|+.+.+..+.+++.+.
T Consensus 435 ~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 435 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999998776554 6777788888999999999999988764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.5e-14 Score=127.15 Aligned_cols=225 Identities=10% Similarity=-0.020 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 038395 73 VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINM 152 (480)
Q Consensus 73 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 152 (480)
..|..+...+...|++++|++.|++..+.. ++...+..+..++...|++++|...+..+.+. .|+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~--------- 71 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQ---GREM--------- 71 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHT---------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---Cccc---------
Confidence 345555556666666666666666655544 44555555555555555555555555554432 0100
Q ss_pred HHhCCCHHHHHHHHHhcCCCC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 038395 153 YSKCGSLKDARLVFDRVNDKD----VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEG 228 (480)
Q Consensus 153 y~~~g~~~~A~~~f~~m~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 228 (480)
.++ ..+|..+...|...|++++|++.|++.... .|+. ..+...|++++|
T Consensus 72 ------------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a 124 (258)
T 3uq3_A 72 ------------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKE 124 (258)
T ss_dssp ------------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHH
T ss_pred ------------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHH
Confidence 001 345666666666777777777777776663 3442 234555677777
Q ss_pred HHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038395 229 RRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306 (480)
Q Consensus 229 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~ 306 (480)
...++.+... -+.+...+..+...|...|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++.
T Consensus 125 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 125 LKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 7777777642 1223556777777888888888888888777 2233 5777888888888888888999988888888
Q ss_pred CCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 307 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
.|+++.++..+..+|...|++++|.+.+++..+.
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 8888888888888898999999998888887654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.4e-14 Score=128.55 Aligned_cols=220 Identities=10% Similarity=-0.010 Sum_probs=142.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 038395 41 LVSLTTMLTCYAKQGEVAAARVLFDDMEE--KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV--EPN----EVTAVA 112 (480)
Q Consensus 41 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~pd----~~t~~~ 112 (480)
...|..+...+.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++..+... .|+ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 35788899999999999999999988643 6778999999999999999999999999877421 122 467777
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCC
Q 038395 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK---DVVVWNSMIVGYAMHGF 189 (480)
Q Consensus 113 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~ 189 (480)
+...+...|++++|...+..+.+. .|+. ..+.+.|++++|...++++... +...|..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 777888888888888888888765 2332 2344445555555555554322 23344444444555555
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHH
Q 038395 190 GKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVM 269 (480)
Q Consensus 190 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 269 (480)
+++|+..|++..+.. +.+...+..+...|.+.|++++|.+.++
T Consensus 155 ~~~A~~~~~~a~~~~-------------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-------------------------------------PEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHHC-------------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-------------------------------------cccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 555555555444421 1223444555555555555555555555
Q ss_pred hC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038395 270 DM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307 (480)
Q Consensus 270 ~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~ 307 (480)
+. ...| +...|..+...+...|++++|...++++++..
T Consensus 198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 54 2223 35566666667777777777777777776665
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.5e-14 Score=129.23 Aligned_cols=241 Identities=10% Similarity=-0.067 Sum_probs=175.3
Q ss_pred HcCChHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHH
Q 038395 84 QHGLANEALVLFRRMLAEKVE--P-NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160 (480)
Q Consensus 84 ~~g~~~~A~~~~~~m~~~g~~--p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 160 (480)
..|++++|++.|+++.+.... | +..++..+...+...|++++|...++.+.+. .+.+..++..+...|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCHH
Confidence 346677788887777765321 1 3456667777777778888888888777764 3446677778888888888888
Q ss_pred HHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 038395 161 DARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237 (480)
Q Consensus 161 ~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 237 (480)
+|.+.|+++.+ .+..+|..+...|.+.|++++|.+.|+++.+. .|+.......+..+...|+.++|...+.....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 88888877653 35678888888888899999999999888874 45544444555556677899999999987775
Q ss_pred hcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 038395 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311 (480)
Q Consensus 238 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~ 311 (480)
. .+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++..|.+.
T Consensus 173 ~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 173 K--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp H--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred c--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 3 23344444 4777777888888999888877 33332 57888899999999999999999999999998775
Q ss_pred hhHHHHHHHHHHcCChhHHHHHH
Q 038395 312 GTYVLLSNIYAAIGNWDGVARVR 334 (480)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~ 334 (480)
..+ ..++...|++++|.+.+
T Consensus 250 ~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHH---HHHHHHHHHHHHC----
T ss_pred HHH---HHHHHHHHHHHhhHHHH
Confidence 444 55677888888887665
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.6e-14 Score=124.28 Aligned_cols=195 Identities=13% Similarity=0.032 Sum_probs=146.5
Q ss_pred CCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038395 140 KVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216 (480)
Q Consensus 140 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 216 (480)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45666777777788888888888888877654 356777778888888888888888888887753 22456677777
Q ss_pred HHHHcc-----------CCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHH
Q 038395 217 SACAHA-----------GLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDSVLWGTL 283 (480)
Q Consensus 217 ~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 283 (480)
.++... |++++|...++...+. .|+ ...+..+...|...|++++|...|++. .+..++..|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 777777 9999999999998853 454 677888889999999999999999887 222678899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038395 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 284 i~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
..++...|++++|...++++++..|+++.++..+..++...|++++|.+.+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999887653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.7e-12 Score=135.07 Aligned_cols=287 Identities=13% Similarity=0.094 Sum_probs=227.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHH
Q 038395 13 STSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEAL 92 (480)
Q Consensus 13 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 92 (480)
..-+...+...|.+++|..+|++... .....+.++. ..|++++|.++.++.. +..+|..+..++...|++++|+
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~~-~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFDV-NTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC-HHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHH
Confidence 44456777788999999999998752 2222333433 6788999999998775 4578889999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC
Q 038395 93 VLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172 (480)
Q Consensus 93 ~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~ 172 (480)
+.|.+. -|...|..++.+|.+.|+++++.+++....+. .+++.+.+.++..|++.+++++..... ..+
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~---~~e~~Idt~LafaYAKl~rleele~fI---~~~ 1193 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFI---NGP 1193 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cccccccHHHHHHHHhhcCHHHHHHHH---hCC
Confidence 999663 47788889999999999999999999988865 345445556999999999998644443 455
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHH
Q 038395 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252 (480)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 252 (480)
+...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.++... +..+|..+-
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~ 1257 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVC 1257 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHH
Confidence 6777888999999999999999999985 478999999999999999999888763 357888888
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHc--CChhHH
Q 038395 253 NLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAI--GNWDGV 330 (480)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a 330 (480)
.++...|++..|......+ ..++..+..++..|...|.+++|..+++..+.+++.+...|.-|...|++. ++..++
T Consensus 1258 ~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEh 1335 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREH 1335 (1630)
T ss_pred HHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHH
Confidence 8888999999998877653 345666778899999999999999999999999988888887777777764 334444
Q ss_pred HHHHH
Q 038395 331 ARVRT 335 (480)
Q Consensus 331 ~~~~~ 335 (480)
.+.|.
T Consensus 1336 lk~f~ 1340 (1630)
T 1xi4_A 1336 LELFW 1340 (1630)
T ss_pred HHHHH
Confidence 44443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.1e-13 Score=123.49 Aligned_cols=250 Identities=9% Similarity=-0.044 Sum_probs=133.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHH
Q 038395 44 LTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN--EVTAVAVLSACG 118 (480)
Q Consensus 44 ~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~~~~ 118 (480)
+......+.+.|++++|+..|++..+ | +...|..+...|.+.|++++|++.|++..+.+..|+ ...|..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 44455556666666666666666543 2 344666666666666666666666666665321121 223555666666
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHH
Q 038395 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQ 195 (480)
Q Consensus 119 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 195 (480)
..|++++|...++...+. .+.+..++..+...|...|++++|.+.|++..+ .+...|..+...+...+++++|++
T Consensus 86 ~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666653 233445566666666666666666666665543 234444444412222335555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038395 196 LFNEMCRIRLKPSDITFIGLLSACAHAGL---VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272 (480)
Q Consensus 196 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 272 (480)
.|++..+.. +.+...+..+..++...|+ .++|...++.+.+...-.|+.. -
T Consensus 164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~------------------------ 217 (272)
T 3u4t_A 164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-K------------------------ 217 (272)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-H------------------------
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-h------------------------
Confidence 555555431 1112333333333333333 3333333333332111011100 0
Q ss_pred CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 038395 273 IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYA 322 (480)
Q Consensus 273 ~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 322 (480)
.....+|..+...+...|++++|...++++++.+|+++.+...+.....
T Consensus 218 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 218 -DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 0012466777788888899999999999999999988776665554443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.6e-12 Score=116.70 Aligned_cols=225 Identities=12% Similarity=-0.067 Sum_probs=148.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCCCchhHH
Q 038395 71 DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ----IGALESGRWIHSYIENSRNIKVNVQVG 146 (480)
Q Consensus 71 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (480)
+..++..+...|...|++++|++.|++..+. -+...+..+...+.. .+++++|...++...+. + +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-N---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-C---CHHHH
Confidence 4556666666777777777777777776662 244556666666666 77777777777777665 3 55566
Q ss_pred HHHHHHHHh----CCCHHHHHHHHHhcCC-CChHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038395 147 TALINMYSK----CGSLKDARLVFDRVND-KDVVVWNSMIVGYAM----HGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217 (480)
Q Consensus 147 ~~li~~y~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 217 (480)
..+..+|.. .+++++|.+.|++..+ .+..++..+...|.. .+++++|++.|++..+.+ +...+..+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 666667776 7777777777766543 355666667777777 777777777777777654 4455555666
Q ss_pred HHHc----cCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHH----cCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHH
Q 038395 218 ACAH----AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR----AGQVEEAYKLVMDM-KIEPDSVLWGTLLGACR 288 (480)
Q Consensus 218 a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~~~~~~~li~a~~ 288 (480)
.+.. .++.++|...|+...+. .+...+..+...|.. .+++++|.+.|++. ... +...+..+...+.
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQY 229 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 6665 67777777777776642 234556666666766 77777777777665 222 2556666666666
Q ss_pred h----cCChhHHHHHHHHHHHcCCCC
Q 038395 289 L----HGNIALGEKIAEYLISQNLAN 310 (480)
Q Consensus 289 ~----~~~~~~a~~~~~~~~~~~~~~ 310 (480)
. .+++++|...++++.+.+|++
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred cCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 6 677777777777777777654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.54 E-value=7.4e-13 Score=126.98 Aligned_cols=245 Identities=9% Similarity=0.046 Sum_probs=199.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCC-hHHHHHHHHHHHHhCCCCCchhHHHH
Q 038395 71 DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP-NEVTAVAVLSACGQIGA-LESGRWIHSYIENSRNIKVNVQVGTA 148 (480)
Q Consensus 71 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~ 148 (480)
+...|+.+...+.+.|++++|++.|++.++. .| +...|..+..++...|+ +++|...++.+++. .+.+..+|+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~ 171 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHH
Confidence 3457888888999999999999999999885 44 56788888888999996 99999999999875 4557888999
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cCC
Q 038395 149 LINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH-AGL 224 (480)
Q Consensus 149 li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~ 224 (480)
+..+|.+.|++++|+..|+++.. .+..+|..+..++.+.|++++|+..|+++.+... -+...|+.+..++.. .|.
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCc
Confidence 99999999999999999998764 4778999999999999999999999999988642 256788888888888 566
Q ss_pred HHHH-----HHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcC--CHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcC----
Q 038395 225 VNEG-----RRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAG--QVEEAYKLVMDMKIEPD-SVLWGTLLGACRLHG---- 291 (480)
Q Consensus 225 ~~~a-----~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p~-~~~~~~li~a~~~~~---- 291 (480)
.++| ...++...+. .|+ ...|..+..+|.+.| ++++|.+.+.++...|+ ...+..+...+...|
T Consensus 251 ~~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccc
Confidence 5777 4778777743 454 667888888888888 68999999888854554 677888888888864
Q ss_pred ----C-hhHHHHHHHHH-HHcCCCCchhHHHHHHHHHH
Q 038395 292 ----N-IALGEKIAEYL-ISQNLANSGTYVLLSNIYAA 323 (480)
Q Consensus 292 ----~-~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 323 (480)
+ .++|..+++++ .+.+|.....|..+...+..
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 2 58999999999 89999888888877766544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-12 Score=117.84 Aligned_cols=205 Identities=12% Similarity=-0.020 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 038395 72 VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151 (480)
Q Consensus 72 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 151 (480)
...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+. .+.+..++..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHH
Confidence 3455666666666666666666666655532 223444555555555555555555555555443 1223333333333
Q ss_pred HHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHH
Q 038395 152 MYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP-SDITFIGLLSACAHAGLVNEGRR 230 (480)
Q Consensus 152 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~ 230 (480)
.|...|++ ++|++.|+++...+..| +...+..+...+...|++++|..
T Consensus 114 ~~~~~g~~-------------------------------~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 114 FLYEQKRY-------------------------------EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp HHHHTTCH-------------------------------HHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhHH-------------------------------HHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 44444444 44444444333311222 22333344444444444444444
Q ss_pred HHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038395 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308 (480)
Q Consensus 231 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~ 308 (480)
.++.+.+.. +.+...+..+...|.+.|++++|.+.++++ ...| +...+..+...+...|+.++|.+.++++.+..|
T Consensus 163 ~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 163 YFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 444444220 112344444555555555555555555554 2222 344555555556666666666666666666666
Q ss_pred CCch
Q 038395 309 ANSG 312 (480)
Q Consensus 309 ~~~~ 312 (480)
+++.
T Consensus 241 ~~~~ 244 (252)
T 2ho1_A 241 GSLE 244 (252)
T ss_dssp TSHH
T ss_pred CCHH
Confidence 5543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-11 Score=130.86 Aligned_cols=280 Identities=11% Similarity=0.046 Sum_probs=224.3
Q ss_pred hcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038395 22 RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101 (480)
Q Consensus 22 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 101 (480)
..|++++|.++.++.. +..+|..+..++.+.|++++|...|.+. .|...|..++..+.+.|++++|++.|...++.
T Consensus 1088 ~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~ 1163 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 1163 (1630)
T ss_pred HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5566777777776553 4678999999999999999999999775 57788999999999999999999999988775
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHH
Q 038395 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181 (480)
Q Consensus 102 g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li 181 (480)
. +++...+.++-+|++.++++....+ .+ .++...+..+.+.|...|++++|..+|... ..|..+.
T Consensus 1164 ~--~e~~Idt~LafaYAKl~rleele~f----I~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA 1228 (1630)
T 1xi4_A 1164 A--RESYVETELIFALAKTNRLAELEEF----IN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLA 1228 (1630)
T ss_pred c--ccccccHHHHHHHHhhcCHHHHHHH----Hh----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHH
Confidence 4 4433344588899999988864444 22 245566778999999999999999999996 4899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCH
Q 038395 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQV 261 (480)
Q Consensus 182 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 261 (480)
..|.+.|++++|++.+++. .+..+|..+-.+|...|++..|......+ ..++..+..++..|.+.|.+
T Consensus 1229 ~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A 1229 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYF 1296 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCH
Confidence 9999999999999999976 35689999999999999999998865542 34566778999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc--CChhHHHHHHHHHHHcCC-----CCchhHHHHHHHHHHcCChhHHHH
Q 038395 262 EEAYKLVMDM-KIEP-DSVLWGTLLGACRLH--GNIALGEKIAEYLISQNL-----ANSGTYVLLSNIYAAIGNWDGVAR 332 (480)
Q Consensus 262 ~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~--~~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~ 332 (480)
++|..+++.. ++.| ....|+-|..++.+. ++..++.++|..-....| .+...|.-+...|.+.|+++.|..
T Consensus 1297 eEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1297 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 9999999776 5554 356776676666665 445556666665544444 456688999999999999999984
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-12 Score=115.21 Aligned_cols=197 Identities=14% Similarity=0.059 Sum_probs=117.4
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038395 142 NVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218 (480)
Q Consensus 142 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 218 (480)
+...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|.+.|++..+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 344455555555556666666665554432 244555666666666666666666666665542 2244555566666
Q ss_pred HHcc-CCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChh
Q 038395 219 CAHA-GLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIA 294 (480)
Q Consensus 219 ~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~ 294 (480)
+... |++++|...++.+.+ .+..|+ ...+..+...|...|++++|.+.++++ ...| +...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 6666 666666666666654 122232 345556666666666666666666665 2223 3556666666677777777
Q ss_pred HHHHHHHHHHHcCC-CCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 295 LGEKIAEYLISQNL-ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 295 ~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
+|...++++++..| .++..+..+...+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 77777777777666 66666666666666777777777766666543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-12 Score=118.22 Aligned_cols=197 Identities=8% Similarity=-0.019 Sum_probs=171.6
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038395 143 VQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219 (480)
Q Consensus 143 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 219 (480)
...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56778888889999999999999988753 467889999999999999999999999998764 33677888899999
Q ss_pred HccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHH
Q 038395 220 AHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALG 296 (480)
Q Consensus 220 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a 296 (480)
...|++++|..+++.+.+ .+..| +...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999985 23445 3667888899999999999999999987 3334 578899999999999999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 297 EKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
...++++.+..|.+...+..+...|...|++++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999997754
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-12 Score=117.93 Aligned_cols=225 Identities=9% Similarity=-0.039 Sum_probs=180.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC----HHHHHHHHH
Q 038395 10 LYVSTSLVDLYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEE--KD----VVCWNVMID 80 (480)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~----~~~~~~li~ 80 (480)
....-.....+.+.|++++|...|++..+ | +..+|..+...|.+.|++++|...|++..+ ++ ..+|..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 34456677888999999999999998753 3 556899999999999999999999998765 22 335899999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHH
Q 038395 81 GYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160 (480)
Q Consensus 81 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 160 (480)
.|...|++++|++.|++..+.. +.+..++..+...+...|++++|...++...+. .+.+..++..+...+...++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998863 346678999999999999999999999998863 4556777777773444456999
Q ss_pred HHHHHHHhcCC---CChHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcC-CCCCH------HHHHHHHHHHHccCCHHH
Q 038395 161 DARLVFDRVND---KDVVVWNSMIVGYAMHGF---GKDALQLFNEMCRIR-LKPSD------ITFIGLLSACAHAGLVNE 227 (480)
Q Consensus 161 ~A~~~f~~m~~---~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~p~~------~t~~~ll~a~~~~g~~~~ 227 (480)
+|.+.|+++.+ .+...|..+...+...|+ +++|...|++..+.. -.|+. .+|..+...+...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999998764 356788888889988888 888999999887642 22332 466677778888888888
Q ss_pred HHHHHHHhhh
Q 038395 228 GRRFFNTMKD 237 (480)
Q Consensus 228 a~~~~~~m~~ 237 (480)
|...|+.+.+
T Consensus 240 A~~~~~~al~ 249 (272)
T 3u4t_A 240 ADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888874
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.4e-13 Score=116.99 Aligned_cols=190 Identities=15% Similarity=0.065 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 038395 73 VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINM 152 (480)
Q Consensus 73 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 152 (480)
..|..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...++...+. .+.+...+..+...
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVLSEA 82 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 344444444555555555555555544431 223344444444445555555555555544442 22233444444444
Q ss_pred HHhC-----------CCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038395 153 YSKC-----------GSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218 (480)
Q Consensus 153 y~~~-----------g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 218 (480)
|.+. |++++|...|++..+ .+...|..+...|.+.|++++|+..|++..+.. .+...+..+..+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 4444 555555555544432 234445555555555555555555555555544 344555555555
Q ss_pred HHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHh
Q 038395 219 CAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMD 270 (480)
Q Consensus 219 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 270 (480)
+...|++++|...|+...+. .| +...+..+...+.+.|++++|...+++
T Consensus 161 ~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC-------------
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555555555555555432 22 234444455555555555555555443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.9e-13 Score=120.45 Aligned_cols=209 Identities=10% Similarity=0.018 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 038395 73 VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINM 152 (480)
Q Consensus 73 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 152 (480)
..|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+. .+.
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~----------- 89 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALEL--DSS----------- 89 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCc-----------
Confidence 344555555555555555555555555431 223444444444444444444444444444432 112
Q ss_pred HHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038395 153 YSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232 (480)
Q Consensus 153 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 232 (480)
+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|...+
T Consensus 90 --------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~ 148 (243)
T 2q7f_A 90 --------------------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYL 148 (243)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred --------------------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 33344444444455555555555555554432 223444555555555555555555555
Q ss_pred HHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038395 233 NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIE-PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310 (480)
Q Consensus 233 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~ 310 (480)
+.+.+.. +.+...+..+...|.+.|++++|.+.+++. ... .+..+|..+...+...|++++|...++++++..|++
T Consensus 149 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 149 QRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcch
Confidence 5555321 223445555666666666666666666655 222 245666777777777777777777777777777776
Q ss_pred chhHHHHH
Q 038395 311 SGTYVLLS 318 (480)
Q Consensus 311 ~~~~~~l~ 318 (480)
+.++..+.
T Consensus 227 ~~~~~~~~ 234 (243)
T 2q7f_A 227 MLALHAKK 234 (243)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 65555443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-12 Score=113.45 Aligned_cols=208 Identities=9% Similarity=-0.067 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 038395 72 VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151 (480)
Q Consensus 72 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 151 (480)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++.+.+. .+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~---------- 74 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPD---------- 74 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT----------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCC----------
Confidence 4456666666666666666666666665532 223445555555555555555555555555543 122
Q ss_pred HHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHH
Q 038395 152 MYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH-GFGKDALQLFNEMCRIRLKPS-DITFIGLLSACAHAGLVNEGR 229 (480)
Q Consensus 152 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~ 229 (480)
+..+|..+...|... |++++|+..|+++.+.+..|+ ...+..+..++...|++++|.
T Consensus 75 ---------------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 133 (225)
T 2vq2_A 75 ---------------------SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAE 133 (225)
T ss_dssp ---------------------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 334445555555555 555666666655555222232 345555566666666666666
Q ss_pred HHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCC--CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038395 230 RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIE--PDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306 (480)
Q Consensus 230 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~--p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~ 306 (480)
..++.+.+.. +.+...+..+...|.+.|++++|.+.+++. ... .+...+..+...+...|+.+.+..+++.+.+.
T Consensus 134 ~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 134 AYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 6666665321 223555666667777777777777777665 222 34556666667777788888888888888777
Q ss_pred CCCCchhHH
Q 038395 307 NLANSGTYV 315 (480)
Q Consensus 307 ~~~~~~~~~ 315 (480)
.|+++....
T Consensus 212 ~p~~~~~~~ 220 (225)
T 2vq2_A 212 FPYSEELQT 220 (225)
T ss_dssp CTTCHHHHH
T ss_pred CCCCHHHHH
Confidence 777765443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.6e-13 Score=122.46 Aligned_cols=237 Identities=8% Similarity=-0.134 Sum_probs=163.7
Q ss_pred cCCHHHHHHHHhhcCCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 038395 54 QGEVAAARVLFDDMEEK-------DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126 (480)
Q Consensus 54 ~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a 126 (480)
.|++++|+..|+++.+. +..+|..+...|...|++++|++.|+++.+.. +.+..++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 46677777777776542 35567778888888888888888888877752 33567777788888888888888
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038395 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND--KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204 (480)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 204 (480)
...++.+.+. .+.+..++..+...|.+.|++++|.+.|+++.+ |+...+...+..+...|++++|...+++.....
T Consensus 97 ~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 97 YEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 8888888764 344567778888888888888888888887753 333333444445566788889998887776652
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-----ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHh
Q 038395 205 LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-----VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDSV 278 (480)
Q Consensus 205 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 278 (480)
+++...+ .++..+...++.++|...+...... .|+ ...+..+...|.+.|++++|...|++. ...|+.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN- 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT-
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh-
Confidence 3333333 3666677778888888888877632 232 467788888889999999999999887 555643
Q ss_pred HHHHHHHHHHhcCChhHHHHHH
Q 038395 279 LWGTLLGACRLHGNIALGEKIA 300 (480)
Q Consensus 279 ~~~~li~a~~~~~~~~~a~~~~ 300 (480)
+.....++...|++++|...+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 223344666777777776655
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-12 Score=126.54 Aligned_cols=265 Identities=13% Similarity=0.020 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHh---CCCC-CchhH
Q 038395 74 CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN----EVTAVAVLSACGQIGALESGRWIHSYIENS---RNIK-VNVQV 145 (480)
Q Consensus 74 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~-~~~~~ 145 (480)
.+..+...+...|++++|+..|++..+.+ +.+ ...+..+...+...|+++.|...++...+. .+.. ....+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34444444555555555555555554431 111 123444444455555555555555443321 0111 12334
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCC--------------------hHHHHHH
Q 038395 146 GTALINMYSKCGSLKDARLVFDRVND-----KD----VVVWNSMIVGYAMHGF--------------------GKDALQL 196 (480)
Q Consensus 146 ~~~li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l 196 (480)
+..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|++.
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 45555556666666666655554432 11 2356666666666666 6666666
Q ss_pred HHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC----ccHHHHHHHHHHHcCCHHHHHHH
Q 038395 197 FNEMCRI----RLKPS-DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK----VEHYGCMVNLLSRAGQVEEAYKL 267 (480)
Q Consensus 197 ~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~ 267 (480)
+++.... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 6655431 11111 235666667777778888887777776642111121 23567777778888888888877
Q ss_pred HHhC----CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC------chhHHHHHHHHHHcCChhHHHHH
Q 038395 268 VMDM----KIEPD----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN------SGTYVLLSNIYAAIGNWDGVARV 333 (480)
Q Consensus 268 ~~~m----~~~p~----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~ 333 (480)
+++. +..++ ..++..+...+...|++++|...++++++..+.. ..++..+..+|...|++++|.+.
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7765 11112 4567777788888888888888888887754321 44677888888888888888888
Q ss_pred HHHHHh
Q 038395 334 RTLMKE 339 (480)
Q Consensus 334 ~~~m~~ 339 (480)
+++..+
T Consensus 330 ~~~al~ 335 (406)
T 3sf4_A 330 AEKHLE 335 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-13 Score=131.12 Aligned_cols=154 Identities=13% Similarity=0.013 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC----c
Q 038395 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRL-KPS----DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK----V 245 (480)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~ 245 (480)
.+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|...++.......-.++ .
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 4567777777778888888888777654210 112 236677777788888888888888876642111111 4
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC------CCc
Q 038395 246 EHYGCMVNLLSRAGQVEEAYKLVMDM----KIEPD----SVLWGTLLGACRLHGNIALGEKIAEYLISQNL------ANS 311 (480)
Q Consensus 246 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~------~~~ 311 (480)
.++..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...++++++..+ ...
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 56777888888899999998888776 11122 55778888899999999999999999888532 224
Q ss_pred hhHHHHHHHHHHcCChh
Q 038395 312 GTYVLLSNIYAAIGNWD 328 (480)
Q Consensus 312 ~~~~~l~~~~~~~g~~~ 328 (480)
.++..+...|...|+..
T Consensus 348 ~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhhHhH
Confidence 46677888888777664
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.5e-13 Score=131.12 Aligned_cols=265 Identities=11% Similarity=-0.007 Sum_probs=168.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHhC---C-CCCchhHH
Q 038395 75 WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNE----VTAVAVLSACGQIGALESGRWIHSYIENSR---N-IKVNVQVG 146 (480)
Q Consensus 75 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~-~~~~~~~~ 146 (480)
+..+...+...|++++|+..|++..+.+ +.+. ..+..+...+...|++++|...++...+.. + .+....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3344455566666666666666665542 1122 245555555666666666666655554320 1 12234455
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCC---------ChHHHHHHHHHHHhcCC-----------------hHHHHHHHHHH
Q 038395 147 TALINMYSKCGSLKDARLVFDRVNDK---------DVVVWNSMIVGYAMHGF-----------------GKDALQLFNEM 200 (480)
Q Consensus 147 ~~li~~y~~~g~~~~A~~~f~~m~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~m 200 (480)
..+...|...|++++|...|++.... ...+|..+...|...|+ +++|++.+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 66666666777777776666654321 23456667777777777 77777777665
Q ss_pred HHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC----ccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 201 CRI----RLKP-SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK----VEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 201 ~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
.+. +-.| ...++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.+.+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 431 1111 1245666777788888888888888877643111111 226777788888888888888888776
Q ss_pred ----CCCC----CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC------CchhHHHHHHHHHHcCChhHHHHHHHHH
Q 038395 272 ----KIEP----DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA------NSGTYVLLSNIYAAIGNWDGVARVRTLM 337 (480)
Q Consensus 272 ----~~~p----~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 337 (480)
+... ...++..+...+...|++++|...++++++..+. ...++..+..+|...|++++|.+.+++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1111 1467778888889999999999999988885432 2347788999999999999999999887
Q ss_pred HhC
Q 038395 338 KEK 340 (480)
Q Consensus 338 ~~~ 340 (480)
.+.
T Consensus 370 l~~ 372 (411)
T 4a1s_A 370 LQL 372 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=7.6e-13 Score=118.57 Aligned_cols=198 Identities=10% Similarity=0.076 Sum_probs=155.0
Q ss_pred CchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038395 141 VNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217 (480)
Q Consensus 141 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 217 (480)
.....+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|++..+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3455677778888889999999998888754 367788889999999999999999999998763 336778888999
Q ss_pred HHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhH
Q 038395 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIAL 295 (480)
Q Consensus 218 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~ 295 (480)
.+...|++++|..+++.+.+.. +.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998542 345678888999999999999999999987 3333 67889999999999999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 296 GEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 296 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
|...++++.+..|.++.++..++.+|...|++++|.+.++++.+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999997753
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-12 Score=122.83 Aligned_cols=264 Identities=13% Similarity=0.031 Sum_probs=166.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHhC---CCC-CchhHHH
Q 038395 76 NVMIDGYAQHGLANEALVLFRRMLAEKVEPN----EVTAVAVLSACGQIGALESGRWIHSYIENSR---NIK-VNVQVGT 147 (480)
Q Consensus 76 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~-~~~~~~~ 147 (480)
......+...|++++|+..|+++.+.. +.+ ...+..+...+...|+++.|...+....+.. +.. ....++.
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 334445555566666666665555532 112 2344455555555566666655555543210 111 1244555
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCC--------------------hHHHHHHHH
Q 038395 148 ALINMYSKCGSLKDARLVFDRVND-----KD----VVVWNSMIVGYAMHGF--------------------GKDALQLFN 198 (480)
Q Consensus 148 ~li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l~~ 198 (480)
.+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|.+.++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 666666667777776666665432 11 2356666677777777 777777776
Q ss_pred HHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC----ccHHHHHHHHHHHcCCHHHHHHHHH
Q 038395 199 EMCRI----RLKP-SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK----VEHYGCMVNLLSRAGQVEEAYKLVM 269 (480)
Q Consensus 199 ~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~ 269 (480)
+.... +..| ...++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.+.++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 65431 1111 1235666777778888888888888877642111111 2367777888888899999888887
Q ss_pred hC----CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC------CchhHHHHHHHHHHcCChhHHHHHHH
Q 038395 270 DM----KIEPD----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLA------NSGTYVLLSNIYAAIGNWDGVARVRT 335 (480)
Q Consensus 270 ~m----~~~p~----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~ 335 (480)
+. +..++ ..++..+...+...|++++|...++++++..+. ...++..+...|...|++++|...++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 76 11112 556778888899999999999999998875432 13477789999999999999999999
Q ss_pred HHHhC
Q 038395 336 LMKEK 340 (480)
Q Consensus 336 ~m~~~ 340 (480)
+..+.
T Consensus 328 ~a~~~ 332 (338)
T 3ro2_A 328 KHLEI 332 (338)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 88764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-11 Score=111.86 Aligned_cols=224 Identities=11% Similarity=-0.042 Sum_probs=194.4
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHh----CCCHHHHHHHHHhcCC-CChHHHHHH
Q 038395 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK----CGSLKDARLVFDRVND-KDVVVWNSM 180 (480)
Q Consensus 106 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~m~~-~~~~~~~~l 180 (480)
+..++..+...+...+++++|...++...+. .+...+..+...|.. .+++++|.+.|++..+ .+..++..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 80 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLL 80 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5667888888899999999999999999873 345678889999999 9999999999998765 477889999
Q ss_pred HHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHhhhhcCCcCCccHHHHHH
Q 038395 181 IVGYAM----HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH----AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252 (480)
Q Consensus 181 i~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 252 (480)
...|.. .+++++|++.|++..+.+ +...+..+...+.. .++.++|...|+...+. + +...+..+.
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg 153 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILG 153 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHH
Confidence 999999 999999999999998875 67788888888988 99999999999999853 3 566778888
Q ss_pred HHHHH----cCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH-
Q 038395 253 NLLSR----AGQVEEAYKLVMDMKIEPDSVLWGTLLGACRL----HGNIALGEKIAEYLISQNLANSGTYVLLSNIYAA- 323 (480)
Q Consensus 253 ~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~- 323 (480)
..|.. .+++++|.+.|++.-...+...+..+...+.. .+++++|...++++.+.+| +..+..+..+|..
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcC
Confidence 88988 99999999999987212467788889999999 9999999999999999876 5688899999999
Q ss_pred ---cCChhHHHHHHHHHHhCCC
Q 038395 324 ---IGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 324 ---~g~~~~a~~~~~~m~~~~~ 342 (480)
.+++++|.+.+++..+.|.
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999987764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-12 Score=127.78 Aligned_cols=301 Identities=12% Similarity=0.003 Sum_probs=199.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCC----------C-ChhHHHHHHHHHHhcC--CHHHHHHHHhhcCC--C-CH
Q 038395 9 DLYVSTSLVDLYARGGDVLSAEKLFATMPQ----------R-SLVSLTTMLTCYAKQG--EVAAARVLFDDMEE--K-DV 72 (480)
Q Consensus 9 d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~----------~-~~~~~~~li~~~~~~g--~~~~A~~~f~~~~~--~-~~ 72 (480)
...+|+.+...|...|++++|...|++..+ + ...+++.+..++.+.| ++++|+..|++..+ | +.
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~ 172 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP 172 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH
Confidence 356799999999999999999998886531 1 2356666666666654 69999999998764 4 45
Q ss_pred HHHHHHHHH---HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----CChHHHHHHHHHHHHhCCCCCchhH
Q 038395 73 VCWNVMIDG---YAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI----GALESGRWIHSYIENSRNIKVNVQV 145 (480)
Q Consensus 73 ~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~ 145 (480)
..+..+... +...++.++|++.|++..+.. +.+..++..+...+... ++.++|.+.++..... .+.+..+
T Consensus 173 ~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~ 249 (472)
T 4g1t_A 173 EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDV 249 (472)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--CSSCHHH
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHH
Confidence 556555544 445688889999999988752 33556666665555544 5678899999998874 4567778
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhc-------------------CChHHHHHHHHHHHHc
Q 038395 146 GTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMH-------------------GFGKDALQLFNEMCRI 203 (480)
Q Consensus 146 ~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~-------------------g~~~~A~~l~~~m~~~ 203 (480)
+..+...|.+.|++++|...|++..+ .+..+|..+...|... +..++|...|++..+.
T Consensus 250 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 329 (472)
T 4g1t_A 250 LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 89999999999999999999998764 3556677666655432 2356788888887765
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccH----HHHHHH-HHHHcCCHHHHHHHHHhC-CC----
Q 038395 204 RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH----YGCMVN-LLSRAGQVEEAYKLVMDM-KI---- 273 (480)
Q Consensus 204 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~----~~~li~-~~~~~g~~~~A~~~~~~m-~~---- 273 (480)
. +.+..++..+...+...|++++|...|+...+. .|+... +..+.. .+...|+.++|...|++. .+
T Consensus 330 ~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~ 405 (472)
T 4g1t_A 330 N-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS 405 (472)
T ss_dssp C-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC
T ss_pred C-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 3 224456777888899999999999999988743 333221 222222 234678899998887664 21
Q ss_pred --------------------CC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHH
Q 038395 274 --------------------EP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVL 316 (480)
Q Consensus 274 --------------------~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 316 (480)
.| ++.+|..|...+...|++++|.+.++++++.+|.++.+...
T Consensus 406 ~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 406 REKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 23 46789999999999999999999999999999877665543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-12 Score=127.71 Aligned_cols=310 Identities=12% Similarity=0.058 Sum_probs=207.7
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC-CChhHHHHHHHHHHhcCCH---HHHHHHHhhcCCCCHHHHHHHHHHHHHcC-----
Q 038395 16 LVDLYARGGDVLSAEKLFATMPQ-RSLVSLTTMLTCYAKQGEV---AAARVLFDDMEEKDVVCWNVMIDGYAQHG----- 86 (480)
Q Consensus 16 ll~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g----- 86 (480)
+...+.+.|++++|.++|.+..+ .+..++..|...|...|+. ++|...|++..+.+...+..|...+...|
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 56677789999999999998754 3556677777777778888 89999999988777777888887666665
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChH---HHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCC----CH
Q 038395 87 LANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE---SGRWIHSYIENSRNIKVNVQVGTALINMYSKCG----SL 159 (480)
Q Consensus 87 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g----~~ 159 (480)
++++|++.|++..+.|.. + .+..+...+...+..+ .+.+.+...... | +......|...|...+ +.
T Consensus 89 ~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~-g---~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAA-G---YPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH-T---CTTHHHHHHHHHHHHTCGGGGH
T ss_pred CHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCcccCH
Confidence 788999999999987643 3 4555666665554433 344444444443 3 3456677778888777 45
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----CCHHHHHHHH
Q 038395 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHG---FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA----GLVNEGRRFF 232 (480)
Q Consensus 160 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~----g~~~~a~~~~ 232 (480)
+.+..+++.....+...+..|...|...| +.++|++.|++..+.| .++...+..+...|... ++.++|..+|
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 56666777777777778888888998899 8899999999988876 34555445566666554 7889999999
Q ss_pred HHhhhhcCCcCCccHHHHHHHH-H--HHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcC-----ChhHHHHHHHHHH
Q 038395 233 NTMKDEYAIEPKVEHYGCMVNL-L--SRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG-----NIALGEKIAEYLI 304 (480)
Q Consensus 233 ~~m~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~-----~~~~a~~~~~~~~ 304 (480)
+... .-++..+..|... | ...+++++|.++|++.-...++..+..|...|. .| ++++|...++++.
T Consensus 241 ~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 241 EKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 8876 2345566666666 4 468899999999988722236777777777776 55 8999999998887
Q ss_pred HcCCCCchhHHHHHHHHHH----cCChhHHHHHHHHHHhCCC
Q 038395 305 SQNLANSGTYVLLSNIYAA----IGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 305 ~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 342 (480)
+.++.++..|..+|.. ..+.++|...+++..+.|.
T Consensus 315 ---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 315 ---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp ---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred ---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 7777888888888877 3488999999998887764
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=4.2e-12 Score=121.76 Aligned_cols=227 Identities=12% Similarity=0.076 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCC-HHHHHHHHHhcCC---CChHHHHHHHH
Q 038395 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS-LKDARLVFDRVND---KDVVVWNSMIV 182 (480)
Q Consensus 107 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~f~~m~~---~~~~~~~~li~ 182 (480)
...|..+..++...|++++|...++.+++. .+.+..+|+.+...|.+.|+ +++|+..|+++.. .+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 356777888889999999999999999985 45678899999999999997 9999999998864 47889999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHH-cCC
Q 038395 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSR-AGQ 260 (480)
Q Consensus 183 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~-~g~ 260 (480)
.+...|++++|+..|+++.+.. +-+...|..+..++...|++++|...++.+.+. .| +...|+.+..+|.+ .|.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999864 226778889999999999999999999999854 45 47788999999999 666
Q ss_pred HHHH-----HHHHHhC-CCCC-CHhHHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcC------
Q 038395 261 VEEA-----YKLVMDM-KIEP-DSVLWGTLLGACRLHG--NIALGEKIAEYLISQNLANSGTYVLLSNIYAAIG------ 325 (480)
Q Consensus 261 ~~~A-----~~~~~~m-~~~p-~~~~~~~li~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 325 (480)
.++| ++.|++. .+.| +...|..+...+...| ++++|...+.++ +.+|+++..+..|+.+|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 5777 4777766 4455 4788999988888887 689999999988 888999889999999999875
Q ss_pred ---ChhHHHHHHHHH-HhC
Q 038395 326 ---NWDGVARVRTLM-KEK 340 (480)
Q Consensus 326 ---~~~~a~~~~~~m-~~~ 340 (480)
..++|.++++++ .+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 358999999998 543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-12 Score=120.58 Aligned_cols=134 Identities=13% Similarity=0.003 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC----c
Q 038395 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRL-KPS----DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK----V 245 (480)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~ 245 (480)
.++..+...|...|++++|.+.+++..+... .++ ..++..+...+...|++++|...++.......-.++ .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 3566666677777777777777776654210 011 235666677777778888888877776532111111 4
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038395 246 EHYGCMVNLLSRAGQVEEAYKLVMDM-------KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308 (480)
Q Consensus 246 ~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~ 308 (480)
..+..+...|...|++++|...+++. +..+ ...++..+...+...|++++|...++++++..+
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 45667777888888888888887766 1111 144677888888999999999999999887654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=1e-10 Score=109.18 Aligned_cols=218 Identities=11% Similarity=0.054 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------ccCCh-------HHHHHHHHHHHHhCCCCCchhHHHHHHHHHH
Q 038395 89 NEALVLFRRMLAEKVEPNEVTAVAVLSACG-------QIGAL-------ESGRWIHSYIENSRNIKVNVQVGTALINMYS 154 (480)
Q Consensus 89 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 154 (480)
++|+.+|++.... .+-+...|..+...+. +.|+. ++|..+++...+. -.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHH
Confidence 5666777776664 1334555655555543 24664 7777777777752 12334557777777777
Q ss_pred hCCCHHHHHHHHHhcCC--C-ChH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HccCCHHHHH
Q 038395 155 KCGSLKDARLVFDRVND--K-DVV-VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC-AHAGLVNEGR 229 (480)
Q Consensus 155 ~~g~~~~A~~~f~~m~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~ 229 (480)
+.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++..+... ++...|....... ...|+.++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHH
Confidence 77888888888777654 2 333 777788888888888888888888776532 2333443333222 2368888888
Q ss_pred HHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-C---CCC--CHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 038395 230 RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-K---IEP--DSVLWGTLLGACRLHGNIALGEKIAEYL 303 (480)
Q Consensus 230 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~li~a~~~~~~~~~a~~~~~~~ 303 (480)
.+|+...+.. +.+...|..++..+.+.|++++|..+|++. . +.| ....|..++......|+.+.|..+++++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888877532 224667777778888888888888888777 2 344 3567788888888888888888888888
Q ss_pred HHcCCCCc
Q 038395 304 ISQNLANS 311 (480)
Q Consensus 304 ~~~~~~~~ 311 (480)
.+..|++.
T Consensus 268 ~~~~p~~~ 275 (308)
T 2ond_A 268 FTAFREEY 275 (308)
T ss_dssp HHHTTTTT
T ss_pred HHHccccc
Confidence 88887644
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-12 Score=124.80 Aligned_cols=267 Identities=12% Similarity=0.025 Sum_probs=201.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CH----HHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHH
Q 038395 42 VSLTTMLTCYAKQGEVAAARVLFDDMEE--K-DV----VCWNVMIDGYAQHGLANEALVLFRRMLAE----KVEP-NEVT 109 (480)
Q Consensus 42 ~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t 109 (480)
..+..+...+...|++++|...|++..+ | +. ..|..+...|...|++++|++.|++..+. +-.| ...+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3455667778889999999999988764 3 22 47888888999999999999999887653 1122 3456
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhC---C-CCCchhHHHHHHHHHHhCCC-----------------HHHHHHHHHh
Q 038395 110 AVAVLSACGQIGALESGRWIHSYIENSR---N-IKVNVQVGTALINMYSKCGS-----------------LKDARLVFDR 168 (480)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~-~~~~~~~~~~li~~y~~~g~-----------------~~~A~~~f~~ 168 (480)
+..+...+...|++++|...+....+.. + .+....++..+...|...|+ +++|.+.|++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 7778888889999999999888876530 1 12235577888889999999 8888888877
Q ss_pred cCC-----C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHH
Q 038395 169 VND-----K----DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL-KPS----DITFIGLLSACAHAGLVNEGRRFFNT 234 (480)
Q Consensus 169 m~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~ 234 (480)
..+ . ...+|..+...|...|++++|++.|++..+... .++ ..++..+...+...|++++|...++.
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 543 1 235788888999999999999999998865311 112 23677888899999999999999998
Q ss_pred hhhhcCCcC----CccHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHH
Q 038395 235 MKDEYAIEP----KVEHYGCMVNLLSRAGQVEEAYKLVMDM-------KIEP-DSVLWGTLLGACRLHGNIALGEKIAEY 302 (480)
Q Consensus 235 m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~ 302 (480)
......-.. ....+..+...|...|++++|.+.+++. +..+ ...++..+...+...|++++|...+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 774321111 1456788889999999999999999877 1111 145778888999999999999999999
Q ss_pred HHHcCC
Q 038395 303 LISQNL 308 (480)
Q Consensus 303 ~~~~~~ 308 (480)
+++..+
T Consensus 369 al~~~~ 374 (411)
T 4a1s_A 369 HLQLAX 374 (411)
T ss_dssp HHHHCC
T ss_pred HHHHHh
Confidence 988665
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-12 Score=129.21 Aligned_cols=208 Identities=9% Similarity=-0.014 Sum_probs=172.8
Q ss_pred hHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCH-HHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHH
Q 038395 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL-KDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFN 198 (480)
Q Consensus 123 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~-~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 198 (480)
++.+.+.+..... ..+.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|.+.|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLG--SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHT--TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555556665553 2344677788888888888888 888888887653 357788999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHc--------CC
Q 038395 199 EMCRIRLKPSDITFIGLLSACAHA---------GLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRA--------GQ 260 (480)
Q Consensus 199 ~m~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~--------g~ 260 (480)
+..+. .|+...+..+...+... |++++|...|++..+. .| +...|..+..+|... |+
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccch
Confidence 98874 57778888888889998 9999999999998853 34 477888888999888 99
Q ss_pred HHHHHHHHHhC-CCCC----CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHH
Q 038395 261 VEEAYKLVMDM-KIEP----DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335 (480)
Q Consensus 261 ~~~A~~~~~~m-~~~p----~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 335 (480)
+++|.+.|++. ...| +...|..+..++...|++++|...++++++..|+++.++..+..++...|++++|.+.+.
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999988 4455 688999999999999999999999999999999999999999999999999999987654
Q ss_pred HH
Q 038395 336 LM 337 (480)
Q Consensus 336 ~m 337 (480)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 43
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.42 E-value=3e-11 Score=103.31 Aligned_cols=166 Identities=13% Similarity=0.027 Sum_probs=122.6
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHH
Q 038395 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252 (480)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 252 (480)
+...|..+...|.+.|++++|++.|++..+.. +-+..++..+..++...|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 45567777777777777777777777776643 124556677777777777777777777777643 122345566666
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHH
Q 038395 253 NLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGV 330 (480)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 330 (480)
..+...+++++|.+.+.+. ...| +...+..+...+...|++++|...++++++.+|.++.++..+..+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 7777788888888877776 3333 4677888888888888888888888888888888888888888888888999998
Q ss_pred HHHHHHHHhCC
Q 038395 331 ARVRTLMKEKG 341 (480)
Q Consensus 331 ~~~~~~m~~~~ 341 (480)
.+.+++..+..
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 88888876643
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-11 Score=118.62 Aligned_cols=297 Identities=7% Similarity=0.002 Sum_probs=155.3
Q ss_pred ChhHHHHHHHHH--HhcCChHHHHHHHhhCCC--------CChhHHHHHHHHH--HhcCCHHHHH-----------HHHh
Q 038395 9 DLYVSTSLVDLY--ARGGDVLSAEKLFATMPQ--------RSLVSLTTMLTCY--AKQGEVAAAR-----------VLFD 65 (480)
Q Consensus 9 d~~~~~~ll~~~--~~~g~~~~A~~~~~~m~~--------~~~~~~~~li~~~--~~~g~~~~A~-----------~~f~ 65 (480)
+..+-+.|=..| .+.+++++|..+++++.+ +++..|-.++..- .-.++++.+. +.|+
T Consensus 9 ~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~ 88 (383)
T 3ulq_A 9 SSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLL 88 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHH
Confidence 334444444333 467888988888877642 2333333333321 1122333333 4444
Q ss_pred hcCC-C-CHH------HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCChHHHHHHHHH
Q 038395 66 DMEE-K-DVV------CWNVMIDGYAQHGLANEALVLFRRMLAEKV-EPN----EVTAVAVLSACGQIGALESGRWIHSY 132 (480)
Q Consensus 66 ~~~~-~-~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~t~~~ll~~~~~~~~~~~a~~~~~~ 132 (480)
.+.. + +.. .|......+...|++++|++.|++..+.-. .|| ..++..+...+...|+++.|...+..
T Consensus 89 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~ 168 (383)
T 3ulq_A 89 EIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168 (383)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4432 1 111 122245566778888888888888765310 122 34666777777778888888877777
Q ss_pred HHHhCCCCC-----chhHHHHHHHHHHhCCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHH
Q 038395 133 IENSRNIKV-----NVQVGTALINMYSKCGSLKDARLVFDRVND-----KD----VVVWNSMIVGYAMHGFGKDALQLFN 198 (480)
Q Consensus 133 ~~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~ 198 (480)
..+...-.+ ...+++.+...|...|++++|...|++..+ ++ ..+++.+...|...|++++|++.|+
T Consensus 169 al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 248 (383)
T 3ulq_A 169 AYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFK 248 (383)
T ss_dssp HHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 665311111 134566666777777777777777665542 11 1356666666666677777776666
Q ss_pred HHHHc----CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC---ccHHHHHHHHHHHcCC---HHHHHHH
Q 038395 199 EMCRI----RL-KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK---VEHYGCMVNLLSRAGQ---VEEAYKL 267 (480)
Q Consensus 199 ~m~~~----g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~ 267 (480)
+..+. +. +....++..+...+...|++++|...++...+...-..+ ...+..+...|...|+ +++|..+
T Consensus 249 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~ 328 (383)
T 3ulq_A 249 RAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDF 328 (383)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 65541 22 222345555666666666666666666655432110111 1123344445555555 5555555
Q ss_pred HHhCCCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038395 268 VMDMKIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLIS 305 (480)
Q Consensus 268 ~~~m~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~ 305 (480)
+++.+..|+ ...+..+...|...|++++|...++++.+
T Consensus 329 ~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 329 LESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555533222 22334444444445555555554444444
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.9e-12 Score=119.15 Aligned_cols=242 Identities=11% Similarity=0.065 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh------CC
Q 038395 72 VVCWNVMIDGYAQHGLANEALVLFRRMLAE-------KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS------RN 138 (480)
Q Consensus 72 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~ 138 (480)
..+|..+...|...|++++|+.+|+++.+. ..+....++..+...+...|++++|...+..+.+. ..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 446667777777777777777777776652 11223345666666667777777777776666543 01
Q ss_pred CCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC-----------CChHHHHHHHHHHHhcCChHHHHHHHHHHHHc----
Q 038395 139 IKVNVQVGTALINMYSKCGSLKDARLVFDRVND-----------KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI---- 203 (480)
Q Consensus 139 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---- 203 (480)
.+....++..+...|...|++++|...|+++.+ ....+|..+...|...|++++|++.|+++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 233455677777778888888888777776542 12345666667777777777777777776553
Q ss_pred --CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhhc------CCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Q 038395 204 --RLKPS-DITFIGLLSACAHAGLVNEGRRFFNTMKDEY------AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIE 274 (480)
Q Consensus 204 --g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 274 (480)
+..|+ ..++..+...+...|++++|...++.+.+.. ...+.........
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~---------------------- 244 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA---------------------- 244 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHH----------------------
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHH----------------------
Confidence 11222 2345556666666777777777766665320 0111111111111
Q ss_pred CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038395 275 PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 275 p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
..+..+...+...+.+..+...++......|....++..++.+|.+.|++++|.+.+++..
T Consensus 245 ---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 245 ---EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp ---HHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ---HHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1111122222333444444455555555555555566666666666666666666666554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.7e-11 Score=103.64 Aligned_cols=168 Identities=12% Similarity=0.038 Sum_probs=134.1
Q ss_pred CchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038395 141 VNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217 (480)
Q Consensus 141 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 217 (480)
.++.+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+.+..... +.+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3566788888888888888888888887653 467788888888888999999998888887753 224556666777
Q ss_pred HHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhH
Q 038395 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIAL 295 (480)
Q Consensus 218 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~ 295 (480)
.+...++.+.+...+....+. .+.+...+..+...|.+.|++++|.+.|++. ...| +..+|..+..++...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 788889999999988888743 1334667888888999999999999999887 4444 57889999999999999999
Q ss_pred HHHHHHHHHHcCCCCc
Q 038395 296 GEKIAEYLISQNLANS 311 (480)
Q Consensus 296 a~~~~~~~~~~~~~~~ 311 (480)
|...++++++.+|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999988653
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.8e-11 Score=117.61 Aligned_cols=312 Identities=11% Similarity=-0.017 Sum_probs=209.5
Q ss_pred hHHHHHHHHHHhcCCh---HHHHHHHhhCCCCChhHHHHHHHHHHhcC-----CHHHHHHHHhhcCCC-CHHHHHHHHHH
Q 038395 11 YVSTSLVDLYARGGDV---LSAEKLFATMPQRSLVSLTTMLTCYAKQG-----EVAAARVLFDDMEEK-DVVCWNVMIDG 81 (480)
Q Consensus 11 ~~~~~ll~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~li~~~~~~g-----~~~~A~~~f~~~~~~-~~~~~~~li~~ 81 (480)
..+..|..+|...|+. ++|...|++..+.++.++..|...+...| +.++|...|++..++ +...+..|...
T Consensus 36 ~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~ 115 (452)
T 3e4b_A 36 EAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAML 115 (452)
T ss_dssp TGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444566667777888 89999999887767777888877665555 788999999987764 45578888888
Q ss_pred HHHcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChH----HHHHHHHHHHHhCCCCCchhHHHHHHHHHH
Q 038395 82 YAQHGLAN---EALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE----SGRWIHSYIENSRNIKVNVQVGTALINMYS 154 (480)
Q Consensus 82 ~~~~g~~~---~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 154 (480)
|...+..+ ++.+.+.+....| +......+...+...+.++ .+..++.... ..++..+..|..+|.
T Consensus 116 y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~-----~~~~~a~~~Lg~~~~ 187 (452)
T 3e4b_A 116 YLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAAL-----NTTDICYVELATVYQ 187 (452)
T ss_dssp HHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHT-----TTCTTHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH-----cCCHHHHHHHHHHHH
Confidence 88876644 4555555555544 3445556666677767444 4444444433 234448889999999
Q ss_pred hCC---CHHHHHHHHHhcCC---CChHHHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--Hc
Q 038395 155 KCG---SLKDARLVFDRVND---KDVVVWNSMIVGYAMH----GFGKDALQLFNEMCRIRLKPSDITFIGLLSA-C--AH 221 (480)
Q Consensus 155 ~~g---~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~--~~ 221 (480)
+.| +.++|.+.|++..+ ++...+..|...|... +++++|++.|++.. .| +...+..+... + ..
T Consensus 188 ~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~ 263 (452)
T 3e4b_A 188 KKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPE 263 (452)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGG
T ss_pred HcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCC
Confidence 999 99999999988754 3455557777777655 79999999999987 43 34455555554 3 56
Q ss_pred cCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcC-----CHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCC
Q 038395 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG-----QVEEAYKLVMDMKIEPDSVLWGTLLGACRL----HGN 292 (480)
Q Consensus 222 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~p~~~~~~~li~a~~~----~~~ 292 (480)
.++.++|..+|+...+. | +...+..|..+|. .| ++++|.++|++.- ..++..+..|...|.. ..+
T Consensus 264 ~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d 337 (452)
T 3e4b_A 264 LGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVY 337 (452)
T ss_dssp GCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCC
T ss_pred CCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcC
Confidence 89999999999998853 3 5667777888887 55 9999999999987 6678888888877766 348
Q ss_pred hhHHHHHHHHHHHcCCCCchhHHHHHHHHHH----cCChhHHHHHHHHHHhCCC
Q 038395 293 IALGEKIAEYLISQNLANSGTYVLLSNIYAA----IGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 342 (480)
.++|...+++..+.+. +.+...|..+|.. ..+.++|...++...+.|.
T Consensus 338 ~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 338 PQKALDHLLTAARNGQ--NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHHHHTTTC--TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhhCh--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999987654 4577888888875 4588999999999988775
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-09 Score=103.27 Aligned_cols=264 Identities=14% Similarity=0.014 Sum_probs=164.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCc----hhHHHH
Q 038395 77 VMIDGYAQHGLANEALVLFRRMLAEKVEPNEV----TAVAVLSACGQIGALESGRWIHSYIENSRNIKVN----VQVGTA 148 (480)
Q Consensus 77 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 148 (480)
.+...+...|++++|...+++........+.. ++..+...+...|+++.|...+....+...-..+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33445556677777777777766543222221 3444455566677777777777666542000111 223455
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCC-------C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--CHHHHH
Q 038395 149 LINMYSKCGSLKDARLVFDRVND-------K----DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK--P--SDITFI 213 (480)
Q Consensus 149 li~~y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~~ 213 (480)
+...|...|++++|...+++... + ....+..+...+...|++++|...+++....... | ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 66677777887777777765532 1 1234556677778888888888888877653221 1 134566
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHH-----HHHHHHHHcCCHHHHHHHHHhC-CCCCC-----HhHHHH
Q 038395 214 GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG-----CMVNLLSRAGQVEEAYKLVMDM-KIEPD-----SVLWGT 282 (480)
Q Consensus 214 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ 282 (480)
.+...+...|++++|...++.......-......+. ..+..+...|++++|...+++. ...|. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 677777888888888888887764311111111122 2334467888999998888887 22221 224567
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCC------CchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 283 LLGACRLHGNIALGEKIAEYLISQNLA------NSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 283 li~a~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
+...+...|++++|...++++....+. ....+..+..+|...|+.++|...+++..+.
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 778888889999999998888774321 1135667788889999999999988887543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.5e-11 Score=117.00 Aligned_cols=285 Identities=8% Similarity=-0.030 Sum_probs=199.9
Q ss_pred HhcCCHHHHHHHHhhcCC--------CCHHHHHHHHHH--HHHcCChHHHH-----------HHHHHHHHCCCCCCHHHH
Q 038395 52 AKQGEVAAARVLFDDMEE--------KDVVCWNVMIDG--YAQHGLANEAL-----------VLFRRMLAEKVEPNEVTA 110 (480)
Q Consensus 52 ~~~g~~~~A~~~f~~~~~--------~~~~~~~~li~~--~~~~g~~~~A~-----------~~~~~m~~~g~~pd~~t~ 110 (480)
.+.+++++|..+++++.+ ++...|-.++.. ....+..+.+. +.++.+... +++...+
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~~~~~ 100 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QARLTGL 100 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCCchhH
Confidence 678999999999888642 234444444332 11223333444 666665442 1111222
Q ss_pred H------HHHHHHHccCChHHHHHHHHHHHHhCC-CCC---chhHHHHHHHHHHhCCCHHHHHHHHHhcCC-----C---
Q 038395 111 V------AVLSACGQIGALESGRWIHSYIENSRN-IKV---NVQVGTALINMYSKCGSLKDARLVFDRVND-----K--- 172 (480)
Q Consensus 111 ~------~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~---~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~--- 172 (480)
. .....+...|++++|...+....+... .+. ...++..+...|...|++++|...|++..+ +
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 2 255567889999999999999986311 111 346788899999999999999998887653 1
Q ss_pred --ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHhhhhc---CCc
Q 038395 173 --DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL-KPS----DITFIGLLSACAHAGLVNEGRRFFNTMKDEY---AIE 242 (480)
Q Consensus 173 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~ 242 (480)
...+++.+...|...|++++|++.|++..+... .++ ..++..+...+...|++++|...++...+-. +..
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 235788899999999999999999998875311 112 2477888899999999999999999887521 221
Q ss_pred C-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CC-----CCC-HhHHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCc
Q 038395 243 P-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KI-----EPD-SVLWGTLLGACRLHGN---IALGEKIAEYLISQNLANS 311 (480)
Q Consensus 243 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-----~p~-~~~~~~li~a~~~~~~---~~~a~~~~~~~~~~~~~~~ 311 (480)
| ...++..+...|.+.|++++|.+.+++. .+ .|. ...+..+...+...|+ +++|..++++. ...|...
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~ 339 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLE 339 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHH
Confidence 3 3567888999999999999999999886 11 122 2335667777888888 66666666655 1223344
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 038395 312 GTYVLLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
..+..+...|...|++++|...+++..+
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5778899999999999999999998864
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.4e-10 Score=108.81 Aligned_cols=300 Identities=11% Similarity=0.042 Sum_probs=176.8
Q ss_pred CCCChhHHHHHHHHH--HhcCChHHHHHHHhhCCC--------CChhHHHHHHHHH--HhcCC---HH------HHHHHH
Q 038395 6 LDKDLYVSTSLVDLY--ARGGDVLSAEKLFATMPQ--------RSLVSLTTMLTCY--AKQGE---VA------AARVLF 64 (480)
Q Consensus 6 ~~~d~~~~~~ll~~~--~~~g~~~~A~~~~~~m~~--------~~~~~~~~li~~~--~~~g~---~~------~A~~~f 64 (480)
.-|+..+.+.|-.-| .+.+++++|..+++++.+ +++..|-.++..- .-.+. .. .....+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 457778888888888 789999999998887532 2333344443321 10111 11 111444
Q ss_pred hhcC---CCC--HH---HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCChHHHHHHHH
Q 038395 65 DDME---EKD--VV---CWNVMIDGYAQHGLANEALVLFRRMLAEKV-EPN----EVTAVAVLSACGQIGALESGRWIHS 131 (480)
Q Consensus 65 ~~~~---~~~--~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~t~~~ll~~~~~~~~~~~a~~~~~ 131 (480)
+.+. .+. .. .|......+...|++++|+..|++..+... .+| ..++..+..++...|+++.|...+.
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 4432 221 11 233344556788999999999998876411 122 3467777778888889888888888
Q ss_pred HHHHhCCC----C-CchhHHHHHHHHHHhCCCHHHHHHHHHhcCC-----C----ChHHHHHHHHHHHhcCChHHHHHHH
Q 038395 132 YIENSRNI----K-VNVQVGTALINMYSKCGSLKDARLVFDRVND-----K----DVVVWNSMIVGYAMHGFGKDALQLF 197 (480)
Q Consensus 132 ~~~~~~~~----~-~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~ 197 (480)
...+...- . ....+++.+...|...|++++|.+.|++..+ . ...+++.+...|...|++++|++.|
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 77653111 1 1244566777788888888888877776543 1 1245666777777777777777777
Q ss_pred HHHHHc----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC---ccHHHHHHHHHHHcCC---HHHHHHH
Q 038395 198 NEMCRI----RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK---VEHYGCMVNLLSRAGQ---VEEAYKL 267 (480)
Q Consensus 198 ~~m~~~----g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~ 267 (480)
++..+. +.+....++..+...+.+.|+.++|...++...+...-.++ ...+..+...|...|+ +.+|...
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 776551 11222455666667777777777777777776643221112 2233444445555555 6666666
Q ss_pred HHhCCCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038395 268 VMDMKIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLIS 305 (480)
Q Consensus 268 ~~~m~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~ 305 (480)
+++.+..|+ ...+..+...|...|++++|...++++.+
T Consensus 326 ~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 326 FEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666543332 23344455555556666666655555543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.9e-10 Score=106.08 Aligned_cols=212 Identities=9% Similarity=0.057 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHhCCCCCchhHHHHHHHHHH-------hCCCH-------HHHHHHHHhcCC---C-ChHHHHHHHHHHH
Q 038395 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYS-------KCGSL-------KDARLVFDRVND---K-DVVVWNSMIVGYA 185 (480)
Q Consensus 124 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~-------~~g~~-------~~A~~~f~~m~~---~-~~~~~~~li~~~~ 185 (480)
++|..+|+++.+. .+.++..|..++..+. +.|++ ++|..+|++... | +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 6788888888874 4667788888888776 45886 899999998754 3 5678999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCH-H-HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHH-HcCCHH
Q 038395 186 MHGFGKDALQLFNEMCRIRLKPSD-I-TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLS-RAGQVE 262 (480)
Q Consensus 186 ~~g~~~~A~~l~~~m~~~g~~p~~-~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~ 262 (480)
+.|++++|.++|++..+ +.|+. . .|..+...+.+.|++++|..+|+...+. .+++...|........ ..|+++
T Consensus 111 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHH
T ss_pred hcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999988 45543 3 7888999999999999999999999843 1233444443333322 369999
Q ss_pred HHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHc---CCC-CchhHHHHHHHHHHcCChhHHHHHHHH
Q 038395 263 EAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQ---NLA-NSGTYVLLSNIYAAIGNWDGVARVRTL 336 (480)
Q Consensus 263 ~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 336 (480)
+|.++|++. ...| +...|..++..+...|+++.|..+|+++++. .|+ ....|..++..+.+.|+.++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999988 2233 5788999999999999999999999999996 443 556888899999999999999999999
Q ss_pred HHhCC
Q 038395 337 MKEKG 341 (480)
Q Consensus 337 m~~~~ 341 (480)
+.+..
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 88764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.8e-11 Score=123.45 Aligned_cols=160 Identities=16% Similarity=0.174 Sum_probs=114.3
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHH
Q 038395 174 VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP-SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCM 251 (480)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 251 (480)
..+|+.|...|.+.|++++|++.|++..+. .| +..++..+..++.+.|++++|.+.|++..+. .|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 345666666666666666666666666653 33 3456666666677777777777777766632 344 5566777
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhH
Q 038395 252 VNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDG 329 (480)
Q Consensus 252 i~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 329 (480)
..+|.+.|++++|.+.|++. .+.|+ ...|..+..++...|++++|+..++++++++|+++.++..|+.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 77777777777777777766 44453 67788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHH
Q 038395 330 VARVRTLMK 338 (480)
Q Consensus 330 a~~~~~~m~ 338 (480)
|.+.+++..
T Consensus 164 A~~~~~kal 172 (723)
T 4gyw_A 164 YDERMKKLV 172 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887777664
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-10 Score=97.46 Aligned_cols=159 Identities=13% Similarity=0.019 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038395 145 VGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221 (480)
Q Consensus 145 ~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 221 (480)
.+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|.+.++++.+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------- 72 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA----------------- 72 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------
Confidence 344445555555555555555555443 133444445555555555555555555544431
Q ss_pred cCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhcCChhHHHHH
Q 038395 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KI-EPDSVLWGTLLGACRLHGNIALGEKI 299 (480)
Q Consensus 222 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~li~a~~~~~~~~~a~~~ 299 (480)
+.+...+..+...|...|++++|.+.++++ .. +.+...|..+...+...|++++|...
T Consensus 73 --------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 73 --------------------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp --------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 122334444555555555555555555554 11 22455666666777777777777777
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 300 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
++++.+..|.++.++..++.+|...|++++|.+.+++..+.
T Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777777777777777777777777777777777776543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-10 Score=115.70 Aligned_cols=206 Identities=10% Similarity=-0.014 Sum_probs=112.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHH
Q 038395 88 ANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL-ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166 (480)
Q Consensus 88 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f 166 (480)
++++++.+.+.... .+.+...+..+..++...|++ ++|...++...+. .+.+...+..+...|.+.|++++|.+.|
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34444555444332 122444555555555555555 5555555555543 2333455555555555556666665555
Q ss_pred HhcCC--CChHHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--------CCHHH
Q 038395 167 DRVND--KDVVVWNSMIVGYAMH---------GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA--------GLVNE 227 (480)
Q Consensus 167 ~~m~~--~~~~~~~~li~~~~~~---------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~--------g~~~~ 227 (480)
++..+ |+...|..+...|... |++++|++.|++..+.. +-+...+..+..++... |++++
T Consensus 161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 55433 3445555555555555 66666666666665532 12345555555555555 66666
Q ss_pred HHHHHHHhhhhcCCcC----CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHH
Q 038395 228 GRRFFNTMKDEYAIEP----KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIA 300 (480)
Q Consensus 228 a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~ 300 (480)
|...|+...+. .| +...|..+..+|.+.|++++|.+.|++. ...| +...|..+..++...|++++|...+
T Consensus 240 A~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 240 ALSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666532 23 4555666666666666666666666665 2333 3455666666666666666665543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-11 Score=112.64 Aligned_cols=161 Identities=14% Similarity=0.076 Sum_probs=68.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhC------CCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC----------
Q 038395 109 TAVAVLSACGQIGALESGRWIHSYIENSR------NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK---------- 172 (480)
Q Consensus 109 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---------- 172 (480)
++..+...+...|++++|...+..+.+.. ..+....++..+...|...|++++|.+.|+++.+.
T Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 192 (311)
T 3nf1_A 113 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDP 192 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 34444444444444444444444444320 11223334444555555555555555555443210
Q ss_pred -ChHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCC-------CHHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 038395 173 -DVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-------RLKP-------SDITFIGLLSACAHAGLVNEGRRFFNTMKD 237 (480)
Q Consensus 173 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p-------~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 237 (480)
...++..+...|...|++++|.+.|+++.+. ...| ....+..+...+...+.+.++...+.....
T Consensus 193 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 272 (311)
T 3nf1_A 193 NVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV 272 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC
Confidence 1234555555555556666665555555431 0000 111222333334444555555555555542
Q ss_pred hcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 238 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
. -+.....+..+...|.+.|++++|.+.|++.
T Consensus 273 ~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 273 D--SPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred C--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1 1223455666667777777777777766654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.24 E-value=4.7e-10 Score=95.30 Aligned_cols=158 Identities=15% Similarity=0.052 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHH
Q 038395 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVG 183 (480)
Q Consensus 107 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~ 183 (480)
...+..+...+...|++++|...++.+.+. .+.+..++..+...|...|++++|...|+++.+ .+...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 346777888899999999999999988763 455788899999999999999999999998753 467788888889
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHH
Q 038395 184 YAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263 (480)
Q Consensus 184 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 263 (480)
+...|++++|.+.|+++.... +.+...+..+...+...|++++|..+++.+.+.. +.+...+..+...|...|++++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHH
Confidence 999999999999999887753 3355566666667777777777777777666421 1123333344444444444444
Q ss_pred HHHHHH
Q 038395 264 AYKLVM 269 (480)
Q Consensus 264 A~~~~~ 269 (480)
|.+.++
T Consensus 163 A~~~~~ 168 (186)
T 3as5_A 163 ALPHFK 168 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.8e-10 Score=107.20 Aligned_cols=299 Identities=9% Similarity=-0.003 Sum_probs=199.7
Q ss_pred ChhHHHHHHHHH--HhcCCHHHHHHHHhhcCC--------CCHHHHHHHHHH--HHHcCChHHHH---------HHHHHH
Q 038395 40 SLVSLTTMLTCY--AKQGEVAAARVLFDDMEE--------KDVVCWNVMIDG--YAQHGLANEAL---------VLFRRM 98 (480)
Q Consensus 40 ~~~~~~~li~~~--~~~g~~~~A~~~f~~~~~--------~~~~~~~~li~~--~~~~g~~~~A~---------~~~~~m 98 (480)
+..+-+.|-..| .+.+++++|.++++++.+ +++..|-.|+.. ....+....+. +.++..
T Consensus 9 ~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i 88 (378)
T 3q15_A 9 SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETI 88 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHH
Confidence 334444555555 789999999999987542 234444444432 11112222222 555555
Q ss_pred HHCCCCCCH-H---HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC----chhHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 038395 99 LAEKVEPNE-V---TAVAVLSACGQIGALESGRWIHSYIENSRNIKV----NVQVGTALINMYSKCGSLKDARLVFDRVN 170 (480)
Q Consensus 99 ~~~g~~pd~-~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 170 (480)
.....+.+. . .+......+...|++++|...+....+.....+ ...++..+...|...|+++.|...+++..
T Consensus 89 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al 168 (378)
T 3q15_A 89 ETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL 168 (378)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 432111111 1 122334456789999999999999886411112 35577888999999999999988887754
Q ss_pred C-----C-----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 038395 171 D-----K-----DVVVWNSMIVGYAMHGFGKDALQLFNEMCRI----RLKP-SDITFIGLLSACAHAGLVNEGRRFFNTM 235 (480)
Q Consensus 171 ~-----~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m 235 (480)
+ + ...+++.+...|...|++++|++.|++..+. +-.+ ...++..+...+...|++++|...++..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 169 DIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp HHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2 1 2457888999999999999999999987652 1111 1346777888999999999999999988
Q ss_pred hhhc---CCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC----CC--CCC-HhHHHHHHHHHHhcCC---hhHHHHHHHH
Q 038395 236 KDEY---AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM----KI--EPD-SVLWGTLLGACRLHGN---IALGEKIAEY 302 (480)
Q Consensus 236 ~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~li~a~~~~~~---~~~a~~~~~~ 302 (480)
.+-. +.+....++..+...|.+.|++++|.+.+++. +. .|. ...+..+...+...++ +++|...+++
T Consensus 249 l~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 7511 21222667788899999999999999999887 21 222 3345555566666777 6666666655
Q ss_pred HHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 038395 303 LISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 303 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
. ...|.....+..++..|...|++++|...+++..+
T Consensus 329 ~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 329 K-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 11223345677899999999999999999988754
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.21 E-value=6.3e-09 Score=99.61 Aligned_cols=256 Identities=10% Similarity=-0.021 Sum_probs=143.8
Q ss_pred HHhcCCHHHHHHHHhhcCC----CCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHH
Q 038395 51 YAKQGEVAAARVLFDDMEE----KDV----VCWNVMIDGYAQHGLANEALVLFRRMLAEKV-EPNE----VTAVAVLSAC 117 (480)
Q Consensus 51 ~~~~g~~~~A~~~f~~~~~----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~----~t~~~ll~~~ 117 (480)
+...|++++|...+++... .+. .+++.+...+...|++++|.+.+++...... .++. .++..+...+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 3445555555555444221 111 1344455555566666666666655543210 0111 1234444555
Q ss_pred HccCChHHHHHHHHHHHHhC---CCC--C-chhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C------ChHHHHHHHHH
Q 038395 118 GQIGALESGRWIHSYIENSR---NIK--V-NVQVGTALINMYSKCGSLKDARLVFDRVND--K------DVVVWNSMIVG 183 (480)
Q Consensus 118 ~~~~~~~~a~~~~~~~~~~~---~~~--~-~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~------~~~~~~~li~~ 183 (480)
...|++++|...++...+.. +.. | ....+..+...|...|++++|...+++... + ...+|..+...
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 56666666666666554420 111 1 233455566667777777777777665431 1 12456667777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCH-HHHH-----HHHHHHHccCCHHHHHHHHHHhhhhcCCcCC---ccHHHHHHHH
Q 038395 184 YAMHGFGKDALQLFNEMCRIRLKPSD-ITFI-----GLLSACAHAGLVNEGRRFFNTMKDEYAIEPK---VEHYGCMVNL 254 (480)
Q Consensus 184 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~-----~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~ 254 (480)
+...|++++|...+++.......++. ..+. ..+..+...|+.++|...++..... ...+. ...+..+...
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHHHH
Confidence 77888888888888877643111111 1111 2233466788888888888877632 11111 1134566777
Q ss_pred HHHcCCHHHHHHHHHhC-------CCCCCH-hHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038395 255 LSRAGQVEEAYKLVMDM-------KIEPDS-VLWGTLLGACRLHGNIALGEKIAEYLISQN 307 (480)
Q Consensus 255 ~~~~g~~~~A~~~~~~m-------~~~p~~-~~~~~li~a~~~~~~~~~a~~~~~~~~~~~ 307 (480)
+...|++++|.+.+++. +..++. ..+..+..++...|+.++|...++++....
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 88888888888888765 111122 255666777888889999988888887744
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=9.4e-10 Score=97.50 Aligned_cols=203 Identities=7% Similarity=-0.002 Sum_probs=151.7
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHH
Q 038395 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMI 181 (480)
Q Consensus 105 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li 181 (480)
.|+..+......+...|++++|...+....+. .-+++...+..+...|.+.|++++|.+.|++..+ .+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKL-TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 46678888888899999999999999999986 3336777777789999999999999999988754 3567888899
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC---ccHHHH
Q 038395 182 VGYAMHGFGKDALQLFNEMCRIRLKPS-D-------ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK---VEHYGC 250 (480)
Q Consensus 182 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~ 250 (480)
..|...|++++|++.|++..+.. |+ . ..|..+...+...|++++|...|+.+.+ +.|+ ...+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHH
Confidence 99999999999999999988753 33 3 4467777788889999999999998884 3554 456667
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 038395 251 MVNLLSRAGQVEEAYKLVMDM-KI-EPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNI 320 (480)
Q Consensus 251 li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 320 (480)
+...|...|+. .++++ .+ ..+...|.... ....+.+++|...+++++++.|+++.+...+..+
T Consensus 159 l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 159 LGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 77777655543 23332 11 22344444433 3345668999999999999999987766655543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.7e-10 Score=98.47 Aligned_cols=188 Identities=12% Similarity=-0.064 Sum_probs=130.8
Q ss_pred CchhHHHHHHHHHHhCCCHHHHHHHHHhcCC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 038395 141 VNVQVGTALINMYSKCGSLKDARLVFDRVND----KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP-SDITFIGL 215 (480)
Q Consensus 141 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~l 215 (480)
.|+..+..+...|.+.|++++|...|++..+ ++...|..+...+...|++++|++.|++..+. .| +...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 3556777778888888888888888876543 56666666888888888888888888888764 34 34567777
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhcCCcCC-c-------cHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HhHHHHH
Q 038395 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPK-V-------EHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD---SVLWGTL 283 (480)
Q Consensus 216 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~l 283 (480)
...+...|++++|...++...+. .|+ . ..|..+...+.+.|++++|.+.|++. ...|+ ...|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 77888888888888888887743 343 3 34666677777888888888888776 55565 4556666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 284 i~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
...+.. .+...++++....+.+...|..+. ....+.+++|...+++..+.
T Consensus 160 ~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 160 GVLFYN-----NGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHH-----HHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 666643 344556666666666554544333 34455678899888888764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-09 Score=99.50 Aligned_cols=152 Identities=13% Similarity=0.097 Sum_probs=83.1
Q ss_pred cCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh------CCCCCchhHHHHHHH
Q 038395 85 HGLANEALVLFRRMLAE-------KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS------RNIKVNVQVGTALIN 151 (480)
Q Consensus 85 ~g~~~~A~~~~~~m~~~-------g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~li~ 151 (480)
.|++++|+..|++..+. ..+....++..+...+...|++++|...+..+.+. ...+....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 45555555555544331 11112345555666666666666666666665543 012234456666777
Q ss_pred HHHhCCCHHHHHHHHHhcCC-------C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHHHHH
Q 038395 152 MYSKCGSLKDARLVFDRVND-------K----DVVVWNSMIVGYAMHGFGKDALQLFNEMCRI------RLKP-SDITFI 213 (480)
Q Consensus 152 ~y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~~ 213 (480)
.|...|++++|.+.|++... + ...+|..+...|...|++++|++.|++..+. +-.| ...++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 77777777777777665432 1 2345556666666666666666666665543 1122 123455
Q ss_pred HHHHHHHccCCHHHHHHHHHHhh
Q 038395 214 GLLSACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 214 ~ll~a~~~~g~~~~a~~~~~~m~ 236 (480)
.+...+...|++++|..+++.+.
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555666666666666665554
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=7.3e-10 Score=114.68 Aligned_cols=163 Identities=13% Similarity=0.170 Sum_probs=122.8
Q ss_pred CCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 038395 140 KVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP-SDITFIGL 215 (480)
Q Consensus 140 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~l 215 (480)
+.+...++.|...|.+.|++++|++.|++..+ .+..+|+.+...|.+.|++++|++.|++..+. .| +...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 33466777777777777788777777776653 35677777888888888888888888887764 34 35677778
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCC
Q 038395 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGTLLGACRLHGN 292 (480)
Q Consensus 216 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~a~~~~~~ 292 (480)
..++...|++++|.+.|++..+. .|+ ...|..+..+|.+.|++++|.+.|++. .+.|+ ...|..+..++...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 88888888888888888877743 454 667788888888888888888888876 45564 6778888888888888
Q ss_pred hhHHHHHHHHHHHcC
Q 038395 293 IALGEKIAEYLISQN 307 (480)
Q Consensus 293 ~~~a~~~~~~~~~~~ 307 (480)
+++|.+.+++++++.
T Consensus 161 ~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 161 WTDYDERMKKLVSIV 175 (723)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 888888888887743
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.06 E-value=5e-08 Score=89.04 Aligned_cols=174 Identities=11% Similarity=0.003 Sum_probs=87.8
Q ss_pred HHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 038395 162 ARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK-PSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237 (480)
Q Consensus 162 A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 237 (480)
|...|++... ++..++..+..++...|++++|++++.+....|.. -+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444444332 23334445555555666666666666655443321 1334444555556666666666666666653
Q ss_pred hcCCcC-----CccHHHHHHHHH--HH--cCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHc-
Q 038395 238 EYAIEP-----KVEHYGCMVNLL--SR--AGQVEEAYKLVMDM-KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ- 306 (480)
Q Consensus 238 ~~~~~p-----~~~~~~~li~~~--~~--~g~~~~A~~~~~~m-~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~- 306 (480)
. .| +..+...|..++ .. .+++.+|..+|+++ ...|+..+-..++.++...|++++|+..++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2 34 233333343332 12 22566666666666 22343222233333556666666666666655543
Q ss_pred ---------CCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 307 ---------NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 307 ---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
+|.++.++..++..+...|+ +|.++++++++.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 35555555555555555554 556666666554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.06 E-value=5.8e-09 Score=95.03 Aligned_cols=198 Identities=15% Similarity=0.104 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHh------CC
Q 038395 72 VVCWNVMIDGYAQHGLANEALVLFRRMLAE------KVEP-NEVTAVAVLSACGQIGALESGRWIHSYIENS------RN 138 (480)
Q Consensus 72 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~ 138 (480)
..+|..+...|...|++++|+..|++..+. +-.| ...++..+...+...|++++|...+..+.+. ..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 345666666666666666666666665543 1122 2345556666666666666666666665543 01
Q ss_pred CCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC-----------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHc----
Q 038395 139 IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-----------DVVVWNSMIVGYAMHGFGKDALQLFNEMCRI---- 203 (480)
Q Consensus 139 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---- 203 (480)
.+....++..+...|...|++++|...|++..+. ...++..+...|...|++++|...|++..+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1234556666677777777777777776655321 2346677777777788888888777776642
Q ss_pred ---CCCCCHH-HHHHHHHHHHccC------CHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 204 ---RLKPSDI-TFIGLLSACAHAG------LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 204 ---g~~p~~~-t~~~ll~a~~~~g------~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
...|... .+..+.......+ .+..+...+..... ..+.....+..+...|.+.|++++|..++++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1122222 2222222222222 23333333333221 11122456777888888888888888888764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.7e-07 Score=94.44 Aligned_cols=334 Identities=10% Similarity=0.013 Sum_probs=221.7
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCC---HHHHHHHHhhcCC-----CCHHHH
Q 038395 7 DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGE---VAAARVLFDDMEE-----KDVVCW 75 (480)
Q Consensus 7 ~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~---~~~A~~~f~~~~~-----~~~~~~ 75 (480)
+-|..+|..++..+.+.+.++.|+.+|+.+.. | ....|..-+..-.+.|. ++.+..+|++... |++..|
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 45788999999999999999999999999864 3 55678888888888888 9999999999763 788888
Q ss_pred HHHHHHHHHcCCh--------HHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHHc---------cCChHHHHHHHHHHHH
Q 038395 76 NVMIDGYAQHGLA--------NEALVLFRRMLA-EKV-EPN-EVTAVAVLSACGQ---------IGALESGRWIHSYIEN 135 (480)
Q Consensus 76 ~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~pd-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~ 135 (480)
..-+.-..+.++. +...++|++.+. .|. .|+ ...|...+..... .+.++.++.+|..+..
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8887766555543 334477877654 466 564 4566665554322 2345667777777764
Q ss_pred hCCCCCchhHHHHHHHHHHh-------------CCCHHHHH---------------------------------------
Q 038395 136 SRNIKVNVQVGTALINMYSK-------------CGSLKDAR--------------------------------------- 163 (480)
Q Consensus 136 ~~~~~~~~~~~~~li~~y~~-------------~g~~~~A~--------------------------------------- 163 (480)
. ....-..+|......-.. ..+++.|.
T Consensus 223 i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 223 Q-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp S-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred C-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 3 211111222111100000 00111122
Q ss_pred ----------------------------HHHHhcCC---CChHHHHHHHHHHHhcCChHHHH-HHHHHHHHcCCCCCHHH
Q 038395 164 ----------------------------LVFDRVND---KDVVVWNSMIVGYAMHGFGKDAL-QLFNEMCRIRLKPSDIT 211 (480)
Q Consensus 164 ----------------------------~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~g~~p~~~t 211 (480)
.+|++... .+...|-..+.-+.+.|+.++|. ++|++.... .+.+...
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 22322221 13445666666666788888886 999988764 3345555
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhcC--------CcCC------------ccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYA--------IEPK------------VEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 212 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--------~~p~------------~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
+...+......|++++|.++|+.+..... -.|+ ...|...+....+.|.++.|..+|.+.
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66777778888999999999999875310 0132 236777888888899999999999887
Q ss_pred -CC--CCCHhHHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 038395 272 -KI--EPDSVLWGTLLGACRLH-GNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 272 -~~--~p~~~~~~~li~a~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 342 (480)
.. .+....|...+..-... ++.+.|..+|+..++..|.++..+...+......|+.+.|..+|++......
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 21 12233443333222333 4589999999999999888887778888888889999999999998877654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=2.1e-08 Score=92.50 Aligned_cols=170 Identities=11% Similarity=-0.076 Sum_probs=101.1
Q ss_pred CHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCChHHHHHHH
Q 038395 56 EVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE----KVEPN-EVTAVAVLSACGQIGALESGRWIH 130 (480)
Q Consensus 56 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~pd-~~t~~~ll~~~~~~~~~~~a~~~~ 130 (480)
++++|...|++. ...|...|++++|++.|.+.... |-+++ ..+|..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477777776664 45677888888888888877543 22222 356777777788888888888777
Q ss_pred HHHHHhC---CCCC-chhHHHHHHHHHHhC-CCHHHHHHHHHhcCC--C---C----hHHHHHHHHHHHhcCChHHHHHH
Q 038395 131 SYIENSR---NIKV-NVQVGTALINMYSKC-GSLKDARLVFDRVND--K---D----VVVWNSMIVGYAMHGFGKDALQL 196 (480)
Q Consensus 131 ~~~~~~~---~~~~-~~~~~~~li~~y~~~-g~~~~A~~~f~~m~~--~---~----~~~~~~li~~~~~~g~~~~A~~l 196 (480)
+...+.. |... -..+++.+..+|... |++++|...|++..+ + + ..+|+.+...|.+.|++++|+..
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 7766531 1000 123555666666664 666666666665432 1 1 23455566666666666666666
Q ss_pred HHHHHHcCCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHhh
Q 038395 197 FNEMCRIRLKPSD------ITFIGLLSACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 197 ~~~m~~~g~~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~ 236 (480)
|++..+....... ..+..+..++...|++++|...|+...
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666553222111 134445555566666666666666655
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=6.9e-09 Score=95.85 Aligned_cols=209 Identities=9% Similarity=-0.061 Sum_probs=136.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhC---CCCCc-hhHHHHHHHHHHhCCCHHHH
Q 038395 87 LANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSR---NIKVN-VQVGTALINMYSKCGSLKDA 162 (480)
Q Consensus 87 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~li~~y~~~g~~~~A 162 (480)
++++|...|.+. ...+...|++++|...+....+.. +.+++ ..+++.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 478888888776 345677899999998888776531 22222 46788888899999999998
Q ss_pred HHHHHhcCC-----CC----hHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCCHHH
Q 038395 163 RLVFDRVND-----KD----VVVWNSMIVGYAMH-GFGKDALQLFNEMCRIRLK-PS----DITFIGLLSACAHAGLVNE 227 (480)
Q Consensus 163 ~~~f~~m~~-----~~----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~ 227 (480)
...|++..+ .+ ..+|+.+...|... |++++|+..|++..+.... .+ ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 888877653 11 34677788888885 8888888888887653110 01 2457777788888888888
Q ss_pred HHHHHHHhhhhcCCcCCcc-----HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHh------HHHHHHHHHH--hcCCh
Q 038395 228 GRRFFNTMKDEYAIEPKVE-----HYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDSV------LWGTLLGACR--LHGNI 293 (480)
Q Consensus 228 a~~~~~~m~~~~~~~p~~~-----~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~------~~~~li~a~~--~~~~~ 293 (480)
|...|+...+...-.+... .|..+..++...|++++|...+++. .+.|+.. .+..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 8888888774311111111 4566677778888888888888877 4444421 2344455554 34556
Q ss_pred hHHHHHHHHHHHcCCCC
Q 038395 294 ALGEKIAEYLISQNLAN 310 (480)
Q Consensus 294 ~~a~~~~~~~~~~~~~~ 310 (480)
++|...++.+..++|..
T Consensus 257 ~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 257 SEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHTTSSCCCHHH
T ss_pred HHHHHHhccCCccHHHH
Confidence 67777766666555543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.9e-08 Score=89.01 Aligned_cols=205 Identities=9% Similarity=-0.051 Sum_probs=136.7
Q ss_pred CchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C-C---hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC-HHHH
Q 038395 141 VNVQVGTALINMYSKCGSLKDARLVFDRVND--K-D---VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL-KPS-DITF 212 (480)
Q Consensus 141 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~ 212 (480)
.+...+..+...+.+.|++++|...|+++.. | + ...+..+..+|.+.|++++|+..|++..+... .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3455666677777788888888888877754 2 3 45677777778888888888888888776422 112 3345
Q ss_pred HHHHHHHHc--------cCCHHHHHHHHHHhhhhcCCcCCc-cHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHH
Q 038395 213 IGLLSACAH--------AGLVNEGRRFFNTMKDEYAIEPKV-EHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283 (480)
Q Consensus 213 ~~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 283 (480)
..+..++.. .|++++|...|+.+.+. .|+. ....++.......+.+ ...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 555666666 77777887777777754 3432 2222211111000000 1124567
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCC---chhHHHHHHHHHHc----------CChhHHHHHHHHHHhCCCccCCceee
Q 038395 284 LGACRLHGNIALGEKIAEYLISQNLAN---SGTYVLLSNIYAAI----------GNWDGVARVRTLMKEKGVQKEPGCSS 350 (480)
Q Consensus 284 i~a~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~ 350 (480)
...+...|+++.|...++++++..|++ +..+..+..+|... |++++|...++++.+...
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p-------- 226 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP-------- 226 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT--------
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC--------
Confidence 788999999999999999999999874 34788888899877 889999999999876532
Q ss_pred EEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHH
Q 038395 351 IELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKA 386 (480)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 386 (480)
.++...++...+.++...+.+
T Consensus 227 ---------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 ---------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ---------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CChHHHHHHHHHHHHHHHHHH
Confidence 245556677766666666543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.99 E-value=4.8e-07 Score=92.61 Aligned_cols=214 Identities=8% Similarity=-0.024 Sum_probs=160.7
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHH-HHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038395 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMC 201 (480)
Q Consensus 126 a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 201 (480)
+..+|++.... ++.+..+|...+..+...|+.++|. ++|++... .+...|-..+....+.|++++|.++|+++.
T Consensus 328 v~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34556666653 4556667777777777889998996 99987654 356678888999999999999999999987
Q ss_pred HcC---------CCCC------------HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcC-
Q 038395 202 RIR---------LKPS------------DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG- 259 (480)
Q Consensus 202 ~~g---------~~p~------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g- 259 (480)
... -.|+ ...|...+....+.|.++.|+.+|..+.+.. ..+....|...+..-.+.+
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCC
Confidence 641 0142 2357777887788899999999999998541 1223344544444444554
Q ss_pred CHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC---CchhHHHHHHHHHHcCChhHHHHHH
Q 038395 260 QVEEAYKLVMDM--KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA---NSGTYVLLSNIYAAIGNWDGVARVR 334 (480)
Q Consensus 260 ~~~~A~~~~~~m--~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~ 334 (480)
+.+.|.++|+.. ...-+...|...+.-....|+.+.|..+|++++...|+ ....|...+..-.+.|+.+.+.++.
T Consensus 485 d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 599999999987 22235677888888888899999999999999998773 3457778888888999999999999
Q ss_pred HHHHhCCC
Q 038395 335 TLMKEKGV 342 (480)
Q Consensus 335 ~~m~~~~~ 342 (480)
+++.+.-.
T Consensus 565 ~R~~~~~P 572 (679)
T 4e6h_A 565 KRFFEKFP 572 (679)
T ss_dssp HHHHHHST
T ss_pred HHHHHhCC
Confidence 99987653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.1e-08 Score=90.82 Aligned_cols=200 Identities=10% Similarity=-0.028 Sum_probs=142.9
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCc---hhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C----ChH
Q 038395 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN---VQVGTALINMYSKCGSLKDARLVFDRVND--K----DVV 175 (480)
Q Consensus 105 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~----~~~ 175 (480)
.+...+......+.+.|++++|...++.+.+. .+.+ ...+..+...|.+.|++++|...|++..+ | ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 35677888888899999999999999999975 2333 67788899999999999999999998764 2 235
Q ss_pred HHHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCcc
Q 038395 176 VWNSMIVGYAM--------HGFGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246 (480)
Q Consensus 176 ~~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 246 (480)
++..+..++.. .|++++|+..|++..+.. |+. .....+ ..+..+... -..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~~-----~~~ 149 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRAK-----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHHH-----HHH
Confidence 67778888888 999999999999998753 432 121111 111111110 011
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhc----------CChhHHHHHHHHHHHcCCCCc
Q 038395 247 HYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD----SVLWGTLLGACRLH----------GNIALGEKIAEYLISQNLANS 311 (480)
Q Consensus 247 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~a~~~~----------~~~~~a~~~~~~~~~~~~~~~ 311 (480)
.+..+...|.+.|++++|...|++. ...|+ ...+..+..++... |++++|...++++++..|+++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 2456677888899999999998887 22333 45677777777766 888999999999999999876
Q ss_pred hh---HHHHHHHHHHcCCh
Q 038395 312 GT---YVLLSNIYAAIGNW 327 (480)
Q Consensus 312 ~~---~~~l~~~~~~~g~~ 327 (480)
.+ ...+...+...+++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 43 33444444444433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.95 E-value=1e-07 Score=87.06 Aligned_cols=178 Identities=10% Similarity=0.014 Sum_probs=116.8
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC-----CChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038395 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND-----KDVVVWNSMIVGYAMHGFGKDALQLFNEM 200 (480)
Q Consensus 126 a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m 200 (480)
+...++..... + +++......+..+|...|++++|++++.+... .+...+-.++..+.+.|+.+.|.+.+++|
T Consensus 85 a~~~l~~l~~~-~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKD-K-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTT-S-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44555555443 2 34444455667777777888888777777632 24456667777888888888888888888
Q ss_pred HHcCCCC-----CHHHHHHHHHHHH--c--cCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 201 CRIRLKP-----SDITFIGLLSACA--H--AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 201 ~~~g~~p-----~~~t~~~ll~a~~--~--~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
.+. .| +..+...+..++. . .++..+|..+|+++... .|+...-..++.++.+.|++++|.+.++.+
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 763 55 3555555555522 2 23788888888887643 344233334444777888888888887754
Q ss_pred -CC----------CC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch
Q 038395 272 -KI----------EP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312 (480)
Q Consensus 272 -~~----------~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 312 (480)
.. .| |+.+...+|......|+ .|.++++++.+..|+++.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 21 14 46666566666666776 788999999999998864
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.95 E-value=9.8e-08 Score=84.31 Aligned_cols=182 Identities=9% Similarity=-0.006 Sum_probs=116.1
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHH
Q 038395 143 VQVGTALINMYSKCGSLKDARLVFDRVND--KD----VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD--ITFIG 214 (480)
Q Consensus 143 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ 214 (480)
...+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|++..+....... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455666777888888888888887653 22 246777778888888888888888888764322111 13333
Q ss_pred HHHHHHc------------------cCCHHHHHHHHHHhhhhcCCcCCc-cHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 038395 215 LLSACAH------------------AGLVNEGRRFFNTMKDEYAIEPKV-EHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275 (480)
Q Consensus 215 ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 275 (480)
+..++.. .|+.++|...|+.+.+. .|+. ..+.+.... +.+....
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~~~---------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHHHH----------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHHHH----------
Confidence 3333332 34555565555555532 2332 111111100 0000000
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 038395 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS---GTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 276 ~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 342 (480)
......+...+...|+++.|...++++++..|+++ .++..+..+|.+.|++++|.+.++.+...+.
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00113456678899999999999999999999875 4688899999999999999999999987754
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.95 E-value=2.2e-08 Score=79.76 Aligned_cols=129 Identities=16% Similarity=0.236 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHH
Q 038395 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLL 255 (480)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 255 (480)
.|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|..+++.+... .|
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~------------ 66 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DP------------ 66 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CT------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CC------------
Confidence 45555566666666666666666655432 123444444555555555555555555554422 11
Q ss_pred HHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHH
Q 038395 256 SRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335 (480)
Q Consensus 256 ~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 335 (480)
.+...|..+...+...|++++|...++++.+..|.+...+..++.+|...|++++|...++
T Consensus 67 -------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 67 -------------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp -------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -------------------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 2344455555556666666666666666666666555566666666666666666666666
Q ss_pred HHHh
Q 038395 336 LMKE 339 (480)
Q Consensus 336 ~m~~ 339 (480)
++.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.94 E-value=3.4e-08 Score=78.60 Aligned_cols=124 Identities=16% Similarity=0.218 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038395 145 VGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221 (480)
Q Consensus 145 ~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 221 (480)
.+..+...|...|++++|.++|+++.+ .+...|..+...+...|++++|...|+++...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 577888999999999999999998753 467889999999999999999999999998764 3356677778888888
Q ss_pred cCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 222 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
.|++++|..+++.+.+.. +.+...+..+...|.+.|++++|.+.++++
T Consensus 82 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 899999988888877431 223445555556666666666666655544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=7.1e-08 Score=88.75 Aligned_cols=175 Identities=14% Similarity=0.086 Sum_probs=135.5
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhc
Q 038395 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239 (480)
Q Consensus 160 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 239 (480)
+...+.+......+...+..+...+.+.|++++|...|++..+.. +-+...+..+...+...|++++|...++.+...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 344455555554556677778888888999999999999988753 224567778888899999999999999988743
Q ss_pred CCcCCccHHHHHH-HHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--chhH
Q 038395 240 AIEPKVEHYGCMV-NLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN--SGTY 314 (480)
Q Consensus 240 ~~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~ 314 (480)
.|+........ ..+.+.++.++|.+.+++. ...| +...+..+...+...|++++|...++++++.+|.+ ...+
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 56543332222 3366777888888888776 3345 57889999999999999999999999999999987 7789
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHH
Q 038395 315 VLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 315 ~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
..|+.+|...|+.++|...+++-.
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHH
Confidence 999999999999999988887653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.89 E-value=7.4e-09 Score=107.35 Aligned_cols=168 Identities=9% Similarity=-0.070 Sum_probs=129.4
Q ss_pred HhCCCHHHHHHHHHhcC-----------CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 038395 154 SKCGSLKDARLVFDRVN-----------DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222 (480)
Q Consensus 154 ~~~g~~~~A~~~f~~m~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 222 (480)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 66788888888888775 2356778888888888888888888888887753 22556777777888888
Q ss_pred CCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHH
Q 038395 223 GLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKI 299 (480)
Q Consensus 223 g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~ 299 (480)
|++++|...|++..+. .| +...+..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|...
T Consensus 481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888888743 45 46677888888888888888 8888776 3444 467788888888888888888888
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHcCC
Q 038395 300 AEYLISQNLANSGTYVLLSNIYAAIGN 326 (480)
Q Consensus 300 ~~~~~~~~~~~~~~~~~l~~~~~~~g~ 326 (480)
++++++.+|.+..++..+..+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 888888888888888888888766555
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.7e-09 Score=87.91 Aligned_cols=138 Identities=9% Similarity=-0.029 Sum_probs=93.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCH
Q 038395 184 YAMHGFGKDALQLFNEMCRIRLKPS-DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQV 261 (480)
Q Consensus 184 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~ 261 (480)
+...|+.++|+..++..... .|+ ...+..+...|...|++++|.+.|+...+. .| +...|..+...|.+.|++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCch
Confidence 34455666666666655432 222 233445666667777777777777776632 34 356677777777777777
Q ss_pred HHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHH-HHHHHHHcCCCCchhHHHHHHHHHHcCC
Q 038395 262 EEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEK-IAEYLISQNLANSGTYVLLSNIYAAIGN 326 (480)
Q Consensus 262 ~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 326 (480)
++|...|++. .+.| +...|..+...+...|+.++|.+ .++++++++|.++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 7777777776 4445 46778888888888888876554 4688899999988888888877777764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-07 Score=98.44 Aligned_cols=188 Identities=11% Similarity=-0.016 Sum_probs=148.6
Q ss_pred HccCChHHHHHHHHHHH--------HhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHh
Q 038395 118 GQIGALESGRWIHSYIE--------NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAM 186 (480)
Q Consensus 118 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~ 186 (480)
...|++++|.+.++... + ..+.+...+..+...|.+.|++++|.+.|++..+ .+...|..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 77899999999999988 4 3456778889999999999999999999998874 477899999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHH
Q 038395 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAY 265 (480)
Q Consensus 187 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 265 (480)
.|++++|++.|++..+.. +-+...+..+..++...|++++ .+.|+.+.+. .| +...|..+..+|.+.|++++|.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999998853 2246778888899999999999 9999998853 45 4678889999999999999999
Q ss_pred HHHHhC-CCCCC-HhHHHHHHHHHHhcCC-----hhHHHHHHHHHHHcCCCCch
Q 038395 266 KLVMDM-KIEPD-SVLWGTLLGACRLHGN-----IALGEKIAEYLISQNLANSG 312 (480)
Q Consensus 266 ~~~~~m-~~~p~-~~~~~~li~a~~~~~~-----~~~a~~~~~~~~~~~~~~~~ 312 (480)
+.|++. ...|+ ...|..+..++...++ .+...++.+.+....+.++.
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 999998 66776 5677777777766555 23444444444445444443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.9e-07 Score=79.59 Aligned_cols=161 Identities=9% Similarity=-0.099 Sum_probs=103.2
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----CHHHHHHHHHHhhhhcCCcCCccHH
Q 038395 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG----LVNEGRRFFNTMKDEYAIEPKVEHY 248 (480)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~~~~~~~p~~~~~ 248 (480)
+..++..+...|...+++++|++.|++..+.| +...+..+-..|.. + +.++|..+|+...+. -+...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 55556666666666666666666666666544 34445555555555 4 667777777666531 234455
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHhC-CCCCC---HhHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCchhHHH
Q 038395 249 GCMVNLLSR----AGQVEEAYKLVMDM-KIEPD---SVLWGTLLGACRL----HGNIALGEKIAEYLISQNLANSGTYVL 316 (480)
Q Consensus 249 ~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~li~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 316 (480)
..|...|.. .+++++|.++|++. ...|. +..+..|...|.. .++.++|...+++..+. |.++.++..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 556666655 66777777777776 33332 5667777777776 66788888888888777 445557777
Q ss_pred HHHHHHHc-C-----ChhHHHHHHHHHHhCCC
Q 038395 317 LSNIYAAI-G-----NWDGVARVRTLMKEKGV 342 (480)
Q Consensus 317 l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 342 (480)
|..+|... | +.++|...+++..+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 77777654 3 77888888877776664
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.78 E-value=6.2e-08 Score=81.96 Aligned_cols=75 Identities=15% Similarity=0.071 Sum_probs=53.9
Q ss_pred HHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--chhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038395 264 AYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN--SGTYVLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 264 A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
|...+++. ...| +...+..+...+...|++++|...++++++..|.. +..+..+..+|...|+.++|...+++..
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 44444444 2334 46777777788888888888888888888887754 4577788888888888888888777654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=4.1e-08 Score=80.70 Aligned_cols=122 Identities=11% Similarity=-0.042 Sum_probs=101.6
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCC
Q 038395 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGN 292 (480)
Q Consensus 216 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~ 292 (480)
...+...|++++|...+..... ..|+ ...+-.+...|.+.|++++|.+.|++. .+.| +..+|..+...+...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 3445667889999999888763 2443 556677899999999999999999988 5555 58899999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHH-HHHHHhC
Q 038395 293 IALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARV-RTLMKEK 340 (480)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~~ 340 (480)
+++|...++++++.+|.++.++..+..+|.+.|++++|.+. +++..+.
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999887765 4666543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.76 E-value=4.2e-07 Score=79.10 Aligned_cols=128 Identities=12% Similarity=0.026 Sum_probs=78.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCC
Q 038395 78 MIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157 (480)
Q Consensus 78 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 157 (480)
+...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...++.+.+. .+.+..++..+...|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHh
Confidence 6777777777777777777777642 225566777777777777777777777777764 3445666666666665544
Q ss_pred C--HHHHHHHHHhcCCCChH--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 038395 158 S--LKDARLVFDRVNDKDVV--VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI 210 (480)
Q Consensus 158 ~--~~~A~~~f~~m~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 210 (480)
+ .+.+...|+....++.. .|..+..++...|++++|+..|++..+ +.|+..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~ 191 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHH
T ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHH
Confidence 3 34455566665555432 233344455556677777777777665 345543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.7e-07 Score=85.74 Aligned_cols=220 Identities=10% Similarity=0.001 Sum_probs=145.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHH
Q 038395 85 HGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164 (480)
Q Consensus 85 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 164 (480)
.|++++|.+++++..+.. +.. + +...++++.|...+... ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHHH
Confidence 567888888888776531 110 0 11135566665555443 345667778777777
Q ss_pred HHHhcCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHccCCHHHHHH
Q 038395 165 VFDRVND-----KD----VVVWNSMIVGYAMHGFGKDALQLFNEMCRIR---LKPS--DITFIGLLSACAHAGLVNEGRR 230 (480)
Q Consensus 165 ~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~ 230 (480)
.|.+..+ .+ ..+|+.+...|.+.|++++|+..|++..+.- -.|. ..++..+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 7766542 11 3467778888888899998888888765421 1121 3567777788888 99999999
Q ss_pred HHHHhhhhcCCcC----CccHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HhHHHHHHHHHHhcCChhHHHH
Q 038395 231 FFNTMKDEYAIEP----KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KI---EPD----SVLWGTLLGACRLHGNIALGEK 298 (480)
Q Consensus 231 ~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~li~a~~~~~~~~~a~~ 298 (480)
.|+....-..-.. ...++..+...|.+.|++++|.+.|++. .+ .++ ...+..+...+...|+++.|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9988774321111 1356778888999999999999999887 11 112 2356667777788899999999
Q ss_pred HHHHHHHcCCCCchh-----HHHHHHHHHHcCChhHHHHH
Q 038395 299 IAEYLISQNLANSGT-----YVLLSNIYAAIGNWDGVARV 333 (480)
Q Consensus 299 ~~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~a~~~ 333 (480)
.+++.+ ..|....+ ...++..| ..|+.+.+.++
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999 88864332 33455555 56776665553
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.4e-07 Score=76.05 Aligned_cols=152 Identities=13% Similarity=0.013 Sum_probs=74.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccC
Q 038395 46 TMLTCYAKQGEVAAARVLFDDMEE---KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA-CGQIG 121 (480)
Q Consensus 46 ~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~-~~~~~ 121 (480)
.+...+.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++.... .|+.......... +...+
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhhc
Confidence 334444455555555555555443 13444555555555555555555555554432 2222221111111 11111
Q ss_pred ChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C---ChHHHHHHHHHHHhcCChHHHHHH
Q 038395 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND--K---DVVVWNSMIVGYAMHGFGKDALQL 196 (480)
Q Consensus 122 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~---~~~~~~~li~~~~~~g~~~~A~~l 196 (480)
....+...++...+. .+.+...+..+...|...|++++|...|+++.+ | +...|..+...|...|+.++|...
T Consensus 89 ~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 89 AESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp TSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred ccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 122345555555543 233455666666666666666666666665543 2 134566666666666766666666
Q ss_pred HHHHH
Q 038395 197 FNEMC 201 (480)
Q Consensus 197 ~~~m~ 201 (480)
|++..
T Consensus 167 y~~al 171 (176)
T 2r5s_A 167 YRRQL 171 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.3e-07 Score=80.81 Aligned_cols=184 Identities=14% Similarity=0.059 Sum_probs=94.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 038395 75 WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEV-TAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMY 153 (480)
Q Consensus 75 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y 153 (480)
+-.....+.+.|++++|+..|++..+. .|+.. .+.. . ... . .........+.+...|
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~----~~~--------------~-~~~~~~~~~~~lg~~~ 64 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T----NVD--------------K-NSEISSKLATELALAY 64 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H----HSC--------------T-TSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h----hhc--------------c-hhhhhHHHHHHHHHHH
Confidence 334445566777778887777777663 34322 2222 0 000 0 0111122233456666
Q ss_pred HhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC--HHHH
Q 038395 154 SKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL--VNEG 228 (480)
Q Consensus 154 ~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a 228 (480)
.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. +-+..++..+..++...|. .+.+
T Consensus 65 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~ 143 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKL 143 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 666666666666665542 355666666667777777777777777766642 1134455555555544433 2233
Q ss_pred HHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHH
Q 038395 229 RRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDSVLWGTLL 284 (480)
Q Consensus 229 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li 284 (480)
...+.... ...|....+..+..++...|++++|...|++. ...|+......+.
T Consensus 144 ~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~ 197 (208)
T 3urz_A 144 ETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197 (208)
T ss_dssp HHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 33333332 11121122233344455567777777777765 5666655444443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.6e-07 Score=95.38 Aligned_cols=159 Identities=14% Similarity=0.066 Sum_probs=124.2
Q ss_pred CCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038395 156 CGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232 (480)
Q Consensus 156 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 232 (480)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999998865 367889999999999999999999999998853 235678888999999999999999999
Q ss_pred HHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc---CChhHHHHHHHHHHHc
Q 038395 233 NTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLH---GNIALGEKIAEYLISQ 306 (480)
Q Consensus 233 ~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~---~~~~~a~~~~~~~~~~ 306 (480)
++..+. .| +...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.
T Consensus 81 ~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999854 34 4678889999999999999999999987 3344 578889999999999 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 038395 307 NLANSGTYVLLS 318 (480)
Q Consensus 307 ~~~~~~~~~~l~ 318 (480)
+|.+...|..+.
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999887777665
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.7e-07 Score=93.63 Aligned_cols=146 Identities=9% Similarity=-0.083 Sum_probs=109.0
Q ss_pred cCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHH
Q 038395 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQL 196 (480)
Q Consensus 120 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l 196 (480)
.|++++|...+++..+. .+.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47888999999988763 345678889999999999999999999998765 3677899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHc---CCHHHHHHHHHhC
Q 038395 197 FNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRA---GQVEEAYKLVMDM 271 (480)
Q Consensus 197 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~---g~~~~A~~~~~~m 271 (480)
|++..+.. +.+...+..+..++...|++++|.+.++...+. .| +...+..+...|... |++++|.+.+++.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 99998853 235678888899999999999999999998854 34 467788889999999 9999999999887
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=6.3e-07 Score=82.33 Aligned_cols=157 Identities=10% Similarity=-0.024 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CChHHHHH-HHHH
Q 038395 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND--KDVVVWNS-MIVG 183 (480)
Q Consensus 107 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~-li~~ 183 (480)
...+..+...+.+.|++++|...++.+.+. .+.+...+..+...|.+.|++++|...|+++.. |+...... ....
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 344555555566666666666666666653 233455566666666666666666666666543 33222111 1222
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC---ccHHHHHHHHHHHcCC
Q 038395 184 YAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK---VEHYGCMVNLLSRAGQ 260 (480)
Q Consensus 184 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~ 260 (480)
+.+.++.++|+..|++..... +.+...+..+..++...|++++|...|..+.+. .|+ ...+..+...|...|+
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX---DLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---ccccccchHHHHHHHHHHHcCC
Confidence 444555555555555555432 223444555555555566666666655555533 222 3344445555555555
Q ss_pred HHHHHHHHH
Q 038395 261 VEEAYKLVM 269 (480)
Q Consensus 261 ~~~A~~~~~ 269 (480)
.++|...++
T Consensus 271 ~~~a~~~~r 279 (287)
T 3qou_A 271 GDALASXYR 279 (287)
T ss_dssp TCHHHHHHH
T ss_pred CCcHHHHHH
Confidence 554444443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.3e-05 Score=73.77 Aligned_cols=227 Identities=10% Similarity=0.015 Sum_probs=153.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccC--ChHHHHHHHHHHHHhCCCCCchhHHHHHHHHH----HhC
Q 038395 84 QHGLANEALVLFRRMLAEKVEPN-EVTAVAVLSACGQIG--ALESGRWIHSYIENSRNIKVNVQVGTALINMY----SKC 156 (480)
Q Consensus 84 ~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y----~~~ 156 (480)
+....++|++++.+++.. .|+ ...|+.--.++...+ ++++++..++.+... .+.+..+|+.--..+ .+.
T Consensus 45 ~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--nPk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 45 AEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--NEKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--CTTCCHHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--CcccHHHHHHHHHHHHHHHHhc
Confidence 334456888888888874 454 445676666777777 888888888888874 445556666554444 455
Q ss_pred ---CCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC----
Q 038395 157 ---GSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGK--DALQLFNEMCRIRLKPSDITFIGLLSACAHAGL---- 224 (480)
Q Consensus 157 ---g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~---- 224 (480)
+++++++++++++.+ +|..+|+--.-.+.+.|.++ ++++.++++.+.... |...|+.-.....+.+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchh
Confidence 678888888887764 47778887777777888877 888888888876543 56666655555556665
Q ss_pred --HHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHH-HHHHHHhC-CC----CCCHhHHHHHHHHHHhcCChhHH
Q 038395 225 --VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE-AYKLVMDM-KI----EPDSVLWGTLLGACRLHGNIALG 296 (480)
Q Consensus 225 --~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~li~a~~~~~~~~~a 296 (480)
++++.+.++.+... -+-|...|+-+-..+.+.|+..+ +..+..+. .. ..++..+..+...+.+.|+.++|
T Consensus 200 ~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 200 NTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 77777777777643 13346667777777777776443 44555554 21 23566777777777777888888
Q ss_pred HHHHHHHHH-cCCCCchhHHHH
Q 038395 297 EKIAEYLIS-QNLANSGTYVLL 317 (480)
Q Consensus 297 ~~~~~~~~~-~~~~~~~~~~~l 317 (480)
.++++.+.+ .+|.....|...
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHHhccChHHHHHHHHH
Confidence 888888776 677665555443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.70 E-value=6.6e-07 Score=78.88 Aligned_cols=185 Identities=17% Similarity=0.043 Sum_probs=131.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC-chhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CC-h---HHHH
Q 038395 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV-NVQVGTALINMYSKCGSLKDARLVFDRVND--KD-V---VVWN 178 (480)
Q Consensus 106 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~-~---~~~~ 178 (480)
+...+..+...+.+.|++++|...++.+.+.....+ ....+..+..+|.+.|++++|...|+++.+ |+ . .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 445666777888999999999999999997522222 235778889999999999999999998764 32 2 2455
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhhc
Q 038395 179 SMIVGYAM------------------HGFGKDALQLFNEMCRIRLKPSDI-TFIGLLSACAHAGLVNEGRRFFNTMKDEY 239 (480)
Q Consensus 179 ~li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 239 (480)
.+..++.. .|+.++|+..|+++.+. .|+.. ....... . ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l------~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----L------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----H------HHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----H------HHHHHHHH---
Confidence 55555554 57899999999999875 45432 2211110 0 00111111
Q ss_pred CCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 038395 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311 (480)
Q Consensus 240 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~ 311 (480)
.....+...|.+.|++++|...|+++ ...|+ ...+..+..++...|+.++|...++.+....|++.
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 11234667888999999999999987 33344 25688889999999999999999999999888754
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.69 E-value=5.5e-07 Score=78.36 Aligned_cols=91 Identities=12% Similarity=-0.124 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 038395 44 LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123 (480)
Q Consensus 44 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~ 123 (480)
+..+...+.+.|++++|...|++...++...|..+...|.+.|++++|++.|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44455566666777777777777666666677777777777777777777777666542 23455666666666666666
Q ss_pred HHHHHHHHHHHH
Q 038395 124 ESGRWIHSYIEN 135 (480)
Q Consensus 124 ~~a~~~~~~~~~ 135 (480)
++|...++...+
T Consensus 88 ~~A~~~~~~al~ 99 (213)
T 1hh8_A 88 DLAIKDLKEALI 99 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666665
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.69 E-value=3e-06 Score=77.95 Aligned_cols=161 Identities=7% Similarity=-0.088 Sum_probs=117.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCc----cHHH
Q 038395 179 SMIVGYAMHGFGKDALQLFNEMCRIR-LKPSDI----TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV----EHYG 249 (480)
Q Consensus 179 ~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~ 249 (480)
..+..+...|++++|.+++++..+.. ..|+.. .+..+...+...+++++|...|+.+.+...-.++. ..++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667788889999999998887632 223321 23346666777788999999998887521112222 2578
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-----CC---CCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC------CchhH
Q 038395 250 CMVNLLSRAGQVEEAYKLVMDM-----KI---EPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLA------NSGTY 314 (480)
Q Consensus 250 ~li~~~~~~g~~~~A~~~~~~m-----~~---~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~------~~~~~ 314 (480)
.+...|...|++++|...|+++ .. .+. ..++..+...|...|++++|...++++++..+. -..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8888899999999998888776 11 112 347888999999999999999999999885432 25678
Q ss_pred HHHHHHHHHcCC-hhHHHHHHHHHHh
Q 038395 315 VLLSNIYAAIGN-WDGVARVRTLMKE 339 (480)
Q Consensus 315 ~~l~~~~~~~g~-~~~a~~~~~~m~~ 339 (480)
..+..+|.+.|+ +++|.+.+++..+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999995 6999998887653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.6e-07 Score=77.07 Aligned_cols=102 Identities=8% Similarity=-0.020 Sum_probs=88.6
Q ss_pred CCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHH
Q 038395 240 AIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVL 316 (480)
Q Consensus 240 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 316 (480)
.+.|+ ...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...|+++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34454 556777788889999999999999988 4445 58889999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 317 LSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
+..+|...|++++|...|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987754
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-06 Score=79.96 Aligned_cols=164 Identities=5% Similarity=-0.094 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC----c
Q 038395 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD-----ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK----V 245 (480)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~ 245 (480)
..+...+..+...|++++|++.+.+..+.....+. ..+..+...+...|++++|...++...+...-..+ .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455667778888888888888877664322111 12334555667788899999888887642111112 3
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC------C
Q 038395 246 EHYGCMVNLLSRAGQVEEAYKLVMDM----KIEPD-----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLA------N 310 (480)
Q Consensus 246 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~------~ 310 (480)
..++.+...|...|++++|...+++. ...|+ ..++..+...|...|++++|...++++++..+. .
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 46778888899999999998888775 11222 257888899999999999999999998875421 1
Q ss_pred chhHHHHHHHHHHcCChhHH-HHHHHHHH
Q 038395 311 SGTYVLLSNIYAAIGNWDGV-ARVRTLMK 338 (480)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 338 (480)
..+|..+..+|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45788899999999999999 77677654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.64 E-value=2e-06 Score=75.07 Aligned_cols=168 Identities=9% Similarity=-0.010 Sum_probs=99.1
Q ss_pred HHHHHhhcCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----ChHHHHHHHHHHH
Q 038395 60 ARVLFDDMEE-KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG----ALESGRWIHSYIE 134 (480)
Q Consensus 60 A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~----~~~~a~~~~~~~~ 134 (480)
|.+.|++..+ .+..++..|...|...+++++|++.|++..+.| +...+..+...+.. + +.++|...++...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4444444333 355666666666666677777777777666654 44555555555555 4 6667777776665
Q ss_pred HhCCCCCchhHHHHHHHHHHh----CCCHHHHHHHHHhcCCCC-----hHHHHHHHHHHHh----cCChHHHHHHHHHHH
Q 038395 135 NSRNIKVNVQVGTALINMYSK----CGSLKDARLVFDRVNDKD-----VVVWNSMIVGYAM----HGFGKDALQLFNEMC 201 (480)
Q Consensus 135 ~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~m~~~~-----~~~~~~li~~~~~----~g~~~~A~~l~~~m~ 201 (480)
+. | +...+..|..+|.. .+++++|.+.|++..+.+ ..++..|...|.. .+++++|+..|++..
T Consensus 81 ~~-g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA-G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT-T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC-C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 54 3 44455666666665 566777777776665532 4566666666666 566777777777766
Q ss_pred HcCCCCCHHHHHHHHHHHHcc-C-----CHHHHHHHHHHhhh
Q 038395 202 RIRLKPSDITFIGLLSACAHA-G-----LVNEGRRFFNTMKD 237 (480)
Q Consensus 202 ~~g~~p~~~t~~~ll~a~~~~-g-----~~~~a~~~~~~m~~ 237 (480)
+.+ ++...+..|...|... | +.++|..+|+...+
T Consensus 157 ~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 157 SLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 541 2233444444444432 2 66677766666653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=8.9e-07 Score=76.99 Aligned_cols=125 Identities=12% Similarity=-0.004 Sum_probs=96.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHh
Q 038395 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRL 289 (480)
Q Consensus 212 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~ 289 (480)
+..+...+...|++++|...|+... .|+...+..+...|.+.|++++|.+.+++. ...| +...|..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3344455666777777777776653 445667777777777777777777777766 2233 56778888888889
Q ss_pred cCChhHHHHHHHHHHHcCCCCc----------------hhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 290 HGNIALGEKIAEYLISQNLANS----------------GTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
.|++++|...++++++..|.+. .++..+..+|...|++++|.+.+++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999998887766 788999999999999999999999988754
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.3e-07 Score=75.97 Aligned_cols=96 Identities=14% Similarity=0.081 Sum_probs=82.5
Q ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 038395 245 VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYA 322 (480)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 322 (480)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++.+|+++.++..+..+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 455667778888899999999998887 3344 67888888899999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHhC
Q 038395 323 AIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 323 ~~g~~~~a~~~~~~m~~~ 340 (480)
..|++++|.+.++...+.
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999888664
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.5e-05 Score=73.37 Aligned_cols=213 Identities=15% Similarity=0.128 Sum_probs=165.9
Q ss_pred ChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCC--CHHHHHHHHHhcCC---CChHHHHHHHHHH----Hhc---CC
Q 038395 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG--SLKDARLVFDRVND---KDVVVWNSMIVGY----AMH---GF 189 (480)
Q Consensus 122 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--~~~~A~~~f~~m~~---~~~~~~~~li~~~----~~~---g~ 189 (480)
..++|+...+.++.. .+.+..+|+.--..+...| +++++++.++.+.. .+..+|+.--..+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 446899999999874 4456677888888888888 99999999998864 4667787765555 555 78
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH--HHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCC------H
Q 038395 190 GKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN--EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ------V 261 (480)
Q Consensus 190 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~------~ 261 (480)
+++++++++++.+...+ +...|..-.-.+.+.|..+ ++.++++.+.+.. .-|...|+.-...+.+.|. +
T Consensus 126 ~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 126 PYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp THHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhH
Confidence 99999999999986433 6677777666677788887 9999999998541 3345566666666666676 8
Q ss_pred HHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCh-hHHHHHHHHHHHcC---CCCchhHHHHHHHHHHcCChhHHHHHHH
Q 038395 262 EEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNI-ALGEKIAEYLISQN---LANSGTYVLLSNIYAAIGNWDGVARVRT 335 (480)
Q Consensus 262 ~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~-~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 335 (480)
+++++.++++ ...| |...|+-+-..+...|+. +.......++.+.+ |.++.++..++.+|.+.|+.++|.++++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 8999998877 3344 688999888888888874 44556777776665 7788889999999999999999999999
Q ss_pred HHHh
Q 038395 336 LMKE 339 (480)
Q Consensus 336 ~m~~ 339 (480)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9975
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.58 E-value=1.9e-05 Score=78.18 Aligned_cols=353 Identities=10% Similarity=-0.029 Sum_probs=213.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CChhHHHHHHHHHHhcCC-HHHHHHHHhhcCC------CCHHHHHHHH
Q 038395 9 DLYVSTSLVDLYARGGDVLSAEKLFATMPQ--RSLVSLTTMLTCYAKQGE-VAAARVLFDDMEE------KDVVCWNVMI 79 (480)
Q Consensus 9 d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~-~~~A~~~f~~~~~------~~~~~~~~li 79 (480)
--.+|...+..+-. |+++.+..+|++... |++..|..-+....+.++ .+....+|+.... .+...|...+
T Consensus 14 aR~vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 14 PSAIMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 34577778887765 889999999998764 888899998888877764 3456667766442 3667888888
Q ss_pred HHHH----HcCChHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHH-------------ccCChHHHHHHHHHHHHhCCCC
Q 038395 80 DGYA----QHGLANEALVLFRRMLAEKVEPN-E-VTAVAVLSACG-------------QIGALESGRWIHSYIENSRNIK 140 (480)
Q Consensus 80 ~~~~----~~g~~~~A~~~~~~m~~~g~~pd-~-~t~~~ll~~~~-------------~~~~~~~a~~~~~~~~~~~~~~ 140 (480)
..+. .+++.+.+.++|++.+.. ++. . ..|......-. ..+.+..|+.++..+... --.
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~-~~~ 169 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPL-IRG 169 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHT
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHH-Hhh
Confidence 7654 346788899999999873 332 1 22222211100 012233345555544432 001
Q ss_pred CchhHHHHHHHHHHhCC--C-----HHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 038395 141 VNVQVGTALINMYSKCG--S-----LKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI 210 (480)
Q Consensus 141 ~~~~~~~~li~~y~~~g--~-----~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 210 (480)
.+...|...++.-...+ - .+.+..+|+++.. .+...|-..+.-+.+.|+.++|..+|++.... |...
T Consensus 170 ~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~ 246 (493)
T 2uy1_A 170 WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGM 246 (493)
T ss_dssp CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSS
T ss_pred ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcH
Confidence 13345655555433221 1 2345667777654 35778988888889999999999999999987 5443
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhc---C-----C---cCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCC--CH
Q 038395 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEY---A-----I---EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP--DS 277 (480)
Q Consensus 211 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~-----~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p--~~ 277 (480)
.+.. +|......++. ++.+.+.+ . . ......|...++.+.+.+.++.|..+|++.. .| +.
T Consensus 247 ~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~-~~~~~~ 319 (493)
T 2uy1_A 247 FLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELG-NEGVGP 319 (493)
T ss_dssp HHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-TSCCCH
T ss_pred HHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhh-CCCCCh
Confidence 3222 12221111111 22222211 0 0 0112456666777777888999999999982 33 33
Q ss_pred hHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeeEEeCCE
Q 038395 278 VLWGTLLGACRL-HGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNK 356 (480)
Q Consensus 278 ~~~~~li~a~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~ 356 (480)
.+|......-.. .++.+.|..+|+.+++..|+++..+...+....+.|+.+.|..+|+...+ ...-|..
T Consensus 320 ~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k------~~~lw~~---- 389 (493)
T 2uy1_A 320 HVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEK------TSRMWDS---- 389 (493)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC------BHHHHHH----
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------HHHHHHH----
Confidence 444332222222 34799999999999998888777777778888899999999999998721 1111211
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHHHHHCC
Q 038395 357 VHEFLAGDLRHPKSKEIYMMLEEINGWLKAEG 388 (480)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g 388 (480)
++.=...||..+.+.+.+++....++..+
T Consensus 390 ---~~~fE~~~G~~~~~r~v~~~~~~~~~~~~ 418 (493)
T 2uy1_A 390 ---MIEYEFMVGSMELFRELVDQKMDAIKADA 418 (493)
T ss_dssp ---HHHHHHHHSCHHHHHHHHHHHHHHHHTTC
T ss_pred ---HHHHHHHCCCHHHHHHHHHHHHHHhcccc
Confidence 01112335676666666666666565433
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.57 E-value=5.4e-07 Score=71.46 Aligned_cols=93 Identities=12% Similarity=0.088 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHc
Q 038395 247 HYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAI 324 (480)
Q Consensus 247 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 324 (480)
.+......|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|.++.+|..+..+|...
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 3444555556666666666666554 2233 3555666666666666666666666666666666666666666666666
Q ss_pred CChhHHHHHHHHHHh
Q 038395 325 GNWDGVARVRTLMKE 339 (480)
Q Consensus 325 g~~~~a~~~~~~m~~ 339 (480)
|++++|.+.|++..+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666665544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.56 E-value=2.2e-06 Score=78.88 Aligned_cols=159 Identities=13% Similarity=0.033 Sum_probs=91.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCc----hhHHHHH
Q 038395 79 IDGYAQHGLANEALVLFRRMLAEKV-EPNEV----TAVAVLSACGQIGALESGRWIHSYIENSRNIKVN----VQVGTAL 149 (480)
Q Consensus 79 i~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l 149 (480)
+..+...|++++|.+++++..+... .|+.. .+..+...+...+++++|...+..+.+...-.++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4556666666666666666655321 12211 2223444555556666666666666653111112 2256666
Q ss_pred HHHHHhCCCHHHHHHHHHhcCC------C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 038395 150 INMYSKCGSLKDARLVFDRVND------K----DVVVWNSMIVGYAMHGFGKDALQLFNEMCRI----RLKPS-DITFIG 214 (480)
Q Consensus 150 i~~y~~~g~~~~A~~~f~~m~~------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ 214 (480)
...|...|++++|...|+++.+ . ...+|..+...|.+.|++++|++.+++..+. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 6677777777777666665541 1 1235666777777777777777777766542 22222 456667
Q ss_pred HHHHHHccCC-HHHHHHHHHHhhh
Q 038395 215 LLSACAHAGL-VNEGRRFFNTMKD 237 (480)
Q Consensus 215 ll~a~~~~g~-~~~a~~~~~~m~~ 237 (480)
+..++...|+ .++|...++....
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 7777777773 5777777766553
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.5e-06 Score=67.87 Aligned_cols=114 Identities=15% Similarity=0.149 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHH
Q 038395 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KI-EPDSVLWGTLLGAC 287 (480)
Q Consensus 210 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~li~a~ 287 (480)
..+..+...+...|++++|..+++.+.+.. +.+...+..+...|.+.|++++|..+++++ .. +.+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 344555555556666666666666655321 223445566666666677777777666665 22 23566777788888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcC
Q 038395 288 RLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIG 325 (480)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 325 (480)
...|++++|...++++.+..|.++..+..+..++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888888888888888888887777777776665543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.7e-06 Score=71.55 Aligned_cols=127 Identities=7% Similarity=-0.049 Sum_probs=88.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 038395 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACR 288 (480)
Q Consensus 211 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~ 288 (480)
.+..+...+...|++++|...|....+.. +.+...+..+...|...|++++|.+.+++. ...| +...|..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34445555556666666666666655321 223555666666777777777777777665 2233 4677888888888
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchhHHH--HHHHHHHcCChhHHHHHHHHHHh
Q 038395 289 LHGNIALGEKIAEYLISQNLANSGTYVL--LSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
..|++++|...++++++..|.+...+.. ++..+...|++++|.+.++...+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999888777644 44447888999999998887643
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.54 E-value=4.2e-07 Score=83.27 Aligned_cols=191 Identities=11% Similarity=-0.026 Sum_probs=101.0
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038395 143 VQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219 (480)
Q Consensus 143 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 219 (480)
...+..+...|.+.|++++|...|++... .+...|..+...|.+.|++++|+..+++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 33444555555556666666665555432 245555666666666666666666666655432 12344555556666
Q ss_pred HccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHH
Q 038395 220 AHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEK 298 (480)
Q Consensus 220 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~ 298 (480)
...|++++|...|....+. .|+ ...+...+....+..+...... .......++......+ ..+ ..|+.+.|.+
T Consensus 83 ~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~ 156 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERELE 156 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHHH
Confidence 6666666666666655532 121 1111111111111111111111 1112223333333333 222 2578888888
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHc-CChhHHHHHHHHHHhC
Q 038395 299 IAEYLISQNLANSGTYVLLSNIYAAI-GNWDGVARVRTLMKEK 340 (480)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 340 (480)
.++++++.+|++......+...+.+. +.+++|.++|.+..+.
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 88888888887766666666666666 6688888888877653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.2e-06 Score=69.48 Aligned_cols=109 Identities=8% Similarity=-0.056 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHH
Q 038395 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGAC 287 (480)
Q Consensus 210 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~ 287 (480)
..+......+.+.|++++|.+.|+...+. -+.+...|..+..+|.+.|++++|.+.+++. .+.| +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 34555666777777777777777777643 1234666777777788888888888887776 3344 477888899999
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 038395 288 RLHGNIALGEKIAEYLISQNLANSGTYVLLSNI 320 (480)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 320 (480)
...|++++|...++++++++|.+..++..|.++
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999998777666543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.51 E-value=6.5e-07 Score=83.12 Aligned_cols=197 Identities=8% Similarity=-0.043 Sum_probs=147.6
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 038395 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFN 198 (480)
Q Consensus 119 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 198 (480)
..|++++|.+++++..+. .+.. .+...+++++|...|.+. ...|...|++++|.+.|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~--~~~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKY--LKTS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHH--HCCC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHH--cccc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHH
Confidence 356788899999888764 1211 111157899998887764 567888999999999999
Q ss_pred HHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhc---CCcC-CccHHHHHHHHHHHcCCHHHHHHHHH
Q 038395 199 EMCRI----RLKP-SDITFIGLLSACAHAGLVNEGRRFFNTMKDEY---AIEP-KVEHYGCMVNLLSRAGQVEEAYKLVM 269 (480)
Q Consensus 199 ~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 269 (480)
+..+. |-.+ -..+|..+...|...|++++|...|+...+-+ |-.+ ...++..+...|.+ |++++|.+.|+
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 87653 1111 13478888889999999999999999876432 1111 13567788888988 99999999998
Q ss_pred hC-CCCC---C----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc------hhHHHHHHHHHHcCChhHHHHHHH
Q 038395 270 DM-KIEP---D----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS------GTYVLLSNIYAAIGNWDGVARVRT 335 (480)
Q Consensus 270 ~m-~~~p---~----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~ 335 (480)
+. .+.| + ..++..+...+...|++++|...++++++..|.+. ..+..++.++...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76 1111 1 46788899999999999999999999999655332 256677888889999999999999
Q ss_pred HHH
Q 038395 336 LMK 338 (480)
Q Consensus 336 ~m~ 338 (480)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 887
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.50 E-value=6.5e-06 Score=75.66 Aligned_cols=161 Identities=10% Similarity=-0.092 Sum_probs=114.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCC--C-C------hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--HH
Q 038395 145 VGTALINMYSKCGSLKDARLVFDRVND--K-D------VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL---KPS--DI 210 (480)
Q Consensus 145 ~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~ 210 (480)
.+...+..|...|++++|.+.+++..+ + . ...+..+...+...|++++|+..|++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445567778888888888888865432 1 1 12234455667778899999999988875321 122 34
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-----ccHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-H
Q 038395 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-----VEHYGCMVNLLSRAGQVEEAYKLVMDM-------KIEPD-S 277 (480)
Q Consensus 211 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~ 277 (480)
+++.+...|...|++++|...|+...+.....|+ ..++..+...|.+.|++++|.+.+++. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888899999999999999887732111232 257788888999999999999988876 11111 5
Q ss_pred hHHHHHHHHHHhcCChhHH-HHHHHHHHH
Q 038395 278 VLWGTLLGACRLHGNIALG-EKIAEYLIS 305 (480)
Q Consensus 278 ~~~~~li~a~~~~~~~~~a-~~~~~~~~~ 305 (480)
.+|..+...+...|++++| ...+++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788888999999999999 777887765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.50 E-value=6.9e-07 Score=84.07 Aligned_cols=93 Identities=8% Similarity=-0.090 Sum_probs=80.1
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 038395 246 EHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAA 323 (480)
Q Consensus 246 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (480)
..|..+..+|.+.|++++|...+++. .+.| +...|..+..++...|++++|...+++++++.|.+..++..+..++..
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 56777888888889999998888887 3344 578899999999999999999999999999999999999999999999
Q ss_pred cCChhHH-HHHHHHHH
Q 038395 324 IGNWDGV-ARVRTLMK 338 (480)
Q Consensus 324 ~g~~~~a-~~~~~~m~ 338 (480)
.|+.++| ...++.|.
T Consensus 277 ~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 277 IRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999988 45666664
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=2.3e-06 Score=67.35 Aligned_cols=116 Identities=9% Similarity=-0.051 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHH
Q 038395 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGAC 287 (480)
Q Consensus 210 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~ 287 (480)
..+..+...+...|++++|...++...... +.+...+..+...|...|++++|.+.+++. ...| +...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 344455555556666666666666655321 223455566666666777777777766665 2223 466777788888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCh
Q 038395 288 RLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW 327 (480)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 327 (480)
...|+++.|...++++.+..|.++..+..+..++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888877765
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.48 E-value=2.2e-06 Score=69.42 Aligned_cols=96 Identities=13% Similarity=0.067 Sum_probs=81.2
Q ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 038395 245 VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYA 322 (480)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 322 (480)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++.+|.++..+..+..+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 445556677788889999999988887 3344 57788888889999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHhC
Q 038395 323 AIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 323 ~~g~~~~a~~~~~~m~~~ 340 (480)
..|++++|.+.++...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999888764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.3e-06 Score=73.53 Aligned_cols=116 Identities=12% Similarity=0.000 Sum_probs=51.6
Q ss_pred hcCCHHHHHH---HHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChH
Q 038395 53 KQGEVAAARV---LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE----KVEP-NEVTAVAVLSACGQIGALE 124 (480)
Q Consensus 53 ~~g~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t~~~ll~~~~~~~~~~ 124 (480)
..|++++|.+ .+..-+.....+++.+...|...|++++|+..|++.... +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 443322223445555666666666666666666555431 1111 1233444444455555555
Q ss_pred HHHHHHHHHHHh---CCCCC--chhHHHHHHHHHHhCCCHHHHHHHHHh
Q 038395 125 SGRWIHSYIENS---RNIKV--NVQVGTALINMYSKCGSLKDARLVFDR 168 (480)
Q Consensus 125 ~a~~~~~~~~~~---~~~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~ 168 (480)
+|...+....+. .+..+ ....+..+...|...|++++|...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 555555444332 01011 122344444445555555555444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.3e-06 Score=67.78 Aligned_cols=113 Identities=8% Similarity=-0.013 Sum_probs=65.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 038395 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACR 288 (480)
Q Consensus 211 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~ 288 (480)
.+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3444444444445555555544444421 0112344444555555555555555555544 2222 4566677777777
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcC
Q 038395 289 LHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIG 325 (480)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 325 (480)
..|++++|...++++++..|.+...+..+..++...|
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 7788888888888888877777777777777776655
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.1e-06 Score=75.45 Aligned_cols=179 Identities=8% Similarity=-0.059 Sum_probs=83.7
Q ss_pred hcCCHHHHHHHHhhcCC--C-CHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCCH---------------
Q 038395 53 KQGEVAAARVLFDDMEE--K-DVVCWNVM-------IDGYAQHGLANEALVLFRRMLAEKVEPNE--------------- 107 (480)
Q Consensus 53 ~~g~~~~A~~~f~~~~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~pd~--------------- 107 (480)
..++.+.|.+.|.+..+ | ....|+.+ ...+.+.++..+++..+++-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46677777777777653 3 34566666 3445555555555555444433 22221
Q ss_pred -------HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC-----hH
Q 038395 108 -------VTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKD-----VV 175 (480)
Q Consensus 108 -------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~-----~~ 175 (480)
.........+...|++++|.+++..+... .|+......+...+.+.+++++|+..|+...... ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 11122333344455555555555444421 1222233444445555555555555555443311 12
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 038395 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS--DITFIGLLSACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 236 (480)
.+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344445555555555555555555543221132 1123333334455555555555555554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.44 E-value=5.4e-06 Score=71.17 Aligned_cols=148 Identities=16% Similarity=0.046 Sum_probs=105.7
Q ss_pred HhcCChHHHHH---HHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC------C---CHHHHHHHHHHHHHcCCh
Q 038395 21 ARGGDVLSAEK---LFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE------K---DVVCWNVMIDGYAQHGLA 88 (480)
Q Consensus 21 ~~~g~~~~A~~---~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~------~---~~~~~~~li~~~~~~g~~ 88 (480)
...|++++|.+ ++..-+.....++..+...|...|++++|...|++..+ . ...+++.+...|...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 46789999999 66554444567899999999999999999999988754 1 345788999999999999
Q ss_pred HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHhC---CCCC-chhHHHHHHHHHHhCCC
Q 038395 89 NEALVLFRRMLAE----KVEP--NEVTAVAVLSACGQIGALESGRWIHSYIENSR---NIKV-NVQVGTALINMYSKCGS 158 (480)
Q Consensus 89 ~~A~~~~~~m~~~----g~~p--d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~li~~y~~~g~ 158 (480)
++|++.|++.... +-.| ....+..+...+...|++++|...++...+.. +.+. ...++..+...|...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999999987653 2122 23457778888999999999999998877530 1110 12234556666667777
Q ss_pred HHHHHHHHHh
Q 038395 159 LKDARLVFDR 168 (480)
Q Consensus 159 ~~~A~~~f~~ 168 (480)
+++|.+.|++
T Consensus 163 ~~~A~~~~~~ 172 (203)
T 3gw4_A 163 LLEAQQHWLR 172 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777666655
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00027 Score=65.77 Aligned_cols=178 Identities=11% Similarity=0.014 Sum_probs=116.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccC-ChHHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 038395 75 WNVMIDGYAQHGLANEALVLFRRMLAEKVEP-NEVTAVAVLSACGQIG-ALESGRWIHSYIENSRNIKVNVQVGTALINM 152 (480)
Q Consensus 75 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 152 (480)
++.+-....+.+..++|++++.+++.. .| +...|+.--.++...+ .+++++.+++.+.+ ..+.+..+|+.-...
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~--~nPKny~aW~hR~wl 132 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV--QNLKSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--TTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 333333444455667888888888874 44 4455666666666677 58888888888886 456677777777666
Q ss_pred HHhC-C-CHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038395 153 YSKC-G-SLKDARLVFDRVNDK---DVVVWNSMIVGYAMHGFGK--------DALQLFNEMCRIRLKPSDITFIGLLSAC 219 (480)
Q Consensus 153 y~~~-g-~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 219 (480)
+.+. + ++++++++++++.+. |..+|+--.-.+.+.|.++ ++++.++++.+.... |...|+.-...+
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL 211 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLR 211 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 6666 6 788888888888763 5567776555555555555 788888888776433 666666666666
Q ss_pred HccCC-------HHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCC
Q 038395 220 AHAGL-------VNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQ 260 (480)
Q Consensus 220 ~~~g~-------~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~ 260 (480)
.+.+. ++++.+.+..+... .| |...|+-+-..+.+.|+
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HhccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCC
Confidence 66664 56677766666632 33 35556555555555554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.2e-06 Score=78.92 Aligned_cols=135 Identities=11% Similarity=-0.051 Sum_probs=85.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC--ccHHHHHHHHH
Q 038395 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK--VEHYGCMVNLL 255 (480)
Q Consensus 178 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~ 255 (480)
-.+...+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 34455666677777777777666553 244334444444667777777777777654421 0 111 22455667777
Q ss_pred HHcCCHHHHHHHHHhC--C-CCCC--HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHH
Q 038395 256 SRAGQVEEAYKLVMDM--K-IEPD--SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLL 317 (480)
Q Consensus 256 ~~~g~~~~A~~~~~~m--~-~~p~--~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 317 (480)
.+.|++++|++.|++. + ..|. ...+.....++...|+.++|...|+++...+|. ...+..|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 7788888888887776 2 1143 335566677788888888888888888888887 5444444
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.41 E-value=7e-06 Score=67.80 Aligned_cols=124 Identities=8% Similarity=-0.115 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 038395 73 VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINM 152 (480)
Q Consensus 73 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 152 (480)
..|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+....+. .+.+...+..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 345666666666677777777666666542 224555556666666666666666666666653 23344455555555
Q ss_pred HHhCCCHHHHHHHHHhcCC---CChHHHHH--HHHHHHhcCChHHHHHHHHH
Q 038395 153 YSKCGSLKDARLVFDRVND---KDVVVWNS--MIVGYAMHGFGKDALQLFNE 199 (480)
Q Consensus 153 y~~~g~~~~A~~~f~~m~~---~~~~~~~~--li~~~~~~g~~~~A~~l~~~ 199 (480)
|.+.|++++|...|++... .+...+.. ++..+...|++++|++.+..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 5555555555555554432 12223322 22224444555555555544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.38 E-value=3e-06 Score=64.68 Aligned_cols=98 Identities=17% Similarity=0.096 Sum_probs=80.1
Q ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CchhHHHHHHH
Q 038395 245 VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA--NSGTYVLLSNI 320 (480)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~ 320 (480)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|. +...+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 455667777788888888888888776 2233 5677888888888999999999999999999888 88888899999
Q ss_pred HHHc-CChhHHHHHHHHHHhCCC
Q 038395 321 YAAI-GNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 321 ~~~~-g~~~~a~~~~~~m~~~~~ 342 (480)
|... |++++|.+.++...+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999988876643
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.6e-06 Score=71.73 Aligned_cols=119 Identities=6% Similarity=0.020 Sum_probs=71.7
Q ss_pred ccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHH-HHhcCCh--hH
Q 038395 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGA-CRLHGNI--AL 295 (480)
Q Consensus 221 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a-~~~~~~~--~~ 295 (480)
..|++++|...++...+.. +.+...+..+...|...|++++|...|++. ...| +...|..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3455555555555554321 223455556666666666666666666655 2222 45556666666 5566776 77
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 296 GEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 296 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
|...++++++..|.++..+..+..+|...|++++|...+++..+..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 7777777777777777777777777777777777777777766543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.5e-06 Score=66.40 Aligned_cols=95 Identities=13% Similarity=0.025 Sum_probs=77.1
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 038395 246 EHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAA 323 (480)
Q Consensus 246 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (480)
..+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++.+|.++.++..+..+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34556667777888888888888776 3334 577888888888889999999999999999999888888889999999
Q ss_pred cCChhHHHHHHHHHHhC
Q 038395 324 IGNWDGVARVRTLMKEK 340 (480)
Q Consensus 324 ~g~~~~a~~~~~~m~~~ 340 (480)
.|++++|...+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 99999999888887654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=2.1e-06 Score=67.44 Aligned_cols=96 Identities=10% Similarity=-0.095 Sum_probs=83.2
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 038395 246 EHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAA 323 (480)
Q Consensus 246 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (480)
..+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..+..+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34556677888999999999999888 4445 588899999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhCC
Q 038395 324 IGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 324 ~g~~~~a~~~~~~m~~~~ 341 (480)
.|++++|...+++..+..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 999999999999887643
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.32 E-value=7.8e-06 Score=63.59 Aligned_cols=97 Identities=18% Similarity=0.235 Sum_probs=86.7
Q ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 038395 245 VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYA 322 (480)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 322 (480)
...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++.+..|.++.++..+..+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 456778889999999999999999988 3233 57889999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHhCC
Q 038395 323 AIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 323 ~~g~~~~a~~~~~~m~~~~ 341 (480)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999987653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.32 E-value=7.3e-06 Score=65.41 Aligned_cols=98 Identities=9% Similarity=-0.065 Sum_probs=80.2
Q ss_pred CCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 038395 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNI 320 (480)
Q Consensus 243 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 320 (480)
.+...+..+...+...|++++|...|++. ...| +...|..+...+...|+++.|...++++++..|.++.++..+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34566777777888888888888888776 3334 477888888888899999999999999999999888889999999
Q ss_pred HHHcCChhHHHHHHHHHHhC
Q 038395 321 YAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 321 ~~~~g~~~~a~~~~~~m~~~ 340 (480)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999998888654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.30 E-value=6.6e-06 Score=65.05 Aligned_cols=97 Identities=15% Similarity=0.042 Sum_probs=87.9
Q ss_pred CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 038395 244 KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIY 321 (480)
Q Consensus 244 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 321 (480)
+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|.++..+..+..+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3566788889999999999999999987 5555 6788999999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHhC
Q 038395 322 AAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 322 ~~~g~~~~a~~~~~~m~~~ 340 (480)
...|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999988765
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.29 E-value=2.7e-06 Score=84.02 Aligned_cols=116 Identities=8% Similarity=-0.019 Sum_probs=89.9
Q ss_pred HHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChh
Q 038395 218 ACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIA 294 (480)
Q Consensus 218 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~ 294 (480)
.+...|++++|.+.|++..+. .|+ ...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 445667788888888777743 343 667778888888888888888888877 4445 4778899999999999999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHH--HHHcCChhHHHHHHHH
Q 038395 295 LGEKIAEYLISQNLANSGTYVLLSNI--YAAIGNWDGVARVRTL 336 (480)
Q Consensus 295 ~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 336 (480)
+|...++++++..|.+..++..+..+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999988888887777 8889999999998874
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=8.8e-06 Score=62.62 Aligned_cols=92 Identities=12% Similarity=0.105 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcC
Q 038395 248 YGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIG 325 (480)
Q Consensus 248 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 325 (480)
+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|.++..+..++.+|...|
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 444445555555555555555554 2222 34555555556666666666666666666666665556666666666666
Q ss_pred ChhHHHHHHHHHHh
Q 038395 326 NWDGVARVRTLMKE 339 (480)
Q Consensus 326 ~~~~a~~~~~~m~~ 339 (480)
++++|.+.+++..+
T Consensus 87 ~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 87 RFEEAKRTYEEGLK 100 (118)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHH
Confidence 66666666655544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.28 E-value=2.3e-06 Score=78.23 Aligned_cols=93 Identities=11% Similarity=-0.121 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 038395 74 CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMY 153 (480)
Q Consensus 74 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y 153 (480)
.+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...++...+. .+.+...+..+..+|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 33444444444444444444444444321 113334444444444444444444444444431 222333444444444
Q ss_pred HhCCCHHHHHHHHHhc
Q 038395 154 SKCGSLKDARLVFDRV 169 (480)
Q Consensus 154 ~~~g~~~~A~~~f~~m 169 (480)
...|++++|...|++.
T Consensus 83 ~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 83 LEMESYDEAIANLQRA 98 (281)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 4444444444444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00023 Score=65.81 Aligned_cols=228 Identities=9% Similarity=0.006 Sum_probs=135.8
Q ss_pred HcCChH-HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCC----------hHHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 038395 84 QHGLAN-EALVLFRRMLAEKVEPNE-VTAVAVLSACGQIGA----------LESGRWIHSYIENSRNIKVNVQVGTALIN 151 (480)
Q Consensus 84 ~~g~~~-~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 151 (480)
+.|.++ +|++++..++.. .|+. ..|+.--......+. ++++..+++.+... .+.+..+|+.-..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--~PKny~aW~hR~w 116 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCW 116 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 455544 678888887764 4543 334433333322222 56777777777763 4567777777777
Q ss_pred HHHhCC--CHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---
Q 038395 152 MYSKCG--SLKDARLVFDRVND---KDVVVWNSMIVGYAMHGF-GKDALQLFNEMCRIRLKPSDITFIGLLSACAHA--- 222 (480)
Q Consensus 152 ~y~~~g--~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~--- 222 (480)
.+.+.| .+++++.+++++.+ +|..+|+--.-.+...|. ++++++.+.++.+..+. |...|+.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 777777 37788888877764 466777777777777777 47888888888876433 555555544443333
Q ss_pred -----------CCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHc-----------CCHHHHHHHHHhC-CCCCCHh
Q 038395 223 -----------GLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRA-----------GQVEEAYKLVMDM-KIEPDSV 278 (480)
Q Consensus 223 -----------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m-~~~p~~~ 278 (480)
+.++++.+.+...... .| |...|+-+--.+.+. +.++++++.++++ ...||.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~- 271 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN- 271 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred cccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-
Confidence 3466677777766632 34 345555444444443 3466677776666 445553
Q ss_pred HHHHHHHHH-----HhcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 038395 279 LWGTLLGAC-----RLHGNIALGEKIAEYLISQNLANSGTYVLLSNI 320 (480)
Q Consensus 279 ~~~~li~a~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 320 (480)
.|..+..+. ...+..++....+.++++++|....-|.-+...
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 343222211 134556677777777777777766555554433
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.27 E-value=0.0006 Score=67.38 Aligned_cols=122 Identities=10% Similarity=-0.010 Sum_probs=65.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcC-CHHHHHHHHHhC--CCCCCHhHHHHHHHHH
Q 038395 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG-QVEEAYKLVMDM--KIEPDSVLWGTLLGAC 287 (480)
Q Consensus 211 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~li~a~ 287 (480)
.|...+....+.+..+.|..+|+.. +..+ .+...|......-.+.+ +.+.|..+|+.. ...-++..|...+.-.
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3444555555556677777777766 2211 12223322222222222 467777777665 1111234455556655
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 038395 288 RLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
...|+.+.|..+++++ +.....|...+..-...|+.+.+.++++++.+
T Consensus 365 ~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6667777777777765 22334555555555666777777776666653
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=1.1e-05 Score=69.34 Aligned_cols=172 Identities=9% Similarity=-0.051 Sum_probs=101.2
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 038395 149 LINMYSKCGSLKDARLVFDRVNDK---DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225 (480)
Q Consensus 149 li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 225 (480)
.+......|++++|.+.++.-... ....|..+...+.+.|++++|+..|++..+.. |+...+... ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~ 79 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------IL 79 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hH
Confidence 333444556666666666543321 34566677777778888888888888777632 211100000 00
Q ss_pred HHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 038395 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYL 303 (480)
Q Consensus 226 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~ 303 (480)
+.-. .. .....+..+..+|.+.|++++|...+++. ...| +...|..+..++...|+++.|...++++
T Consensus 80 ~~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 80 LDKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 0000 00 01245666777788888888888888776 3334 5778888999999999999999999999
Q ss_pred HHcCCCCchhHHHHHHHHHHcCChhHHH-HHHHHHHhCC
Q 038395 304 ISQNLANSGTYVLLSNIYAAIGNWDGVA-RVRTLMKEKG 341 (480)
Q Consensus 304 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~~ 341 (480)
++..|.+..++..+..++...++.+++. ..+..|...+
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999889999999998888887776 5555554443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=1.6e-05 Score=62.39 Aligned_cols=93 Identities=8% Similarity=-0.068 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 038395 73 VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINM 152 (480)
Q Consensus 73 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 152 (480)
..|..+...+...|++++|++.|++..... +.+...+..+...+...|++++|...+....+. .+.+...+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHH
Confidence 344555555555555555555555554431 223444444555555555555555555555443 22233444444444
Q ss_pred HHhCCCHHHHHHHHHh
Q 038395 153 YSKCGSLKDARLVFDR 168 (480)
Q Consensus 153 y~~~g~~~~A~~~f~~ 168 (480)
|.+.|++++|...|++
T Consensus 90 ~~~~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKK 105 (131)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHH
Confidence 4444444444444444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.2e-05 Score=67.44 Aligned_cols=126 Identities=10% Similarity=0.060 Sum_probs=91.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHH-HHHcCCH--
Q 038395 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNL-LSRAGQV-- 261 (480)
Q Consensus 185 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~~-- 261 (480)
...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+...+.. +.+...+..+... |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34677788888888777653 2356677778888888888888888888877431 2345566777777 7788888
Q ss_pred HHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchh
Q 038395 262 EEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313 (480)
Q Consensus 262 ~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 313 (480)
++|...+++. ...| +...|..+...+...|+++.|...++++++..|+++..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 8888888877 3334 46778888888999999999999999999999887543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.26 E-value=7.3e-06 Score=68.03 Aligned_cols=94 Identities=14% Similarity=0.085 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHc
Q 038395 247 HYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAI 324 (480)
Q Consensus 247 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 324 (480)
.+..+...|.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++.+|.++..|..+..+|...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4444555555566666666655554 2223 4555666666666666666666666666666666666666666666666
Q ss_pred CChhHHHHHHHHHHhC
Q 038395 325 GNWDGVARVRTLMKEK 340 (480)
Q Consensus 325 g~~~~a~~~~~~m~~~ 340 (480)
|++++|.+.+++..+.
T Consensus 93 g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 93 ADYKGAKEAYEKGIEA 108 (164)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh
Confidence 6666666666665543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.3e-05 Score=64.73 Aligned_cols=94 Identities=14% Similarity=0.032 Sum_probs=52.1
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 038395 246 EHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNI 320 (480)
Q Consensus 246 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 320 (480)
..+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|.++..+..+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 108 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA 108 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHH
Confidence 33444445555555555555555554 33444 34555555555555666666666666666555555555555566
Q ss_pred HHHcCChhHHHHHHHHHHh
Q 038395 321 YAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 321 ~~~~g~~~~a~~~~~~m~~ 339 (480)
|...|++++|...+++..+
T Consensus 109 ~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 109 LEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666555544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=1.7e-05 Score=60.90 Aligned_cols=108 Identities=10% Similarity=0.067 Sum_probs=63.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 038395 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACR 288 (480)
Q Consensus 211 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~ 288 (480)
.+..+...+...|++++|...++...... +.+...+..+...|.+.|++++|...+++. ...| +...|..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34444445555555555555555554321 123445555555666666666666666555 2223 4566677777777
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 038395 289 LHGNIALGEKIAEYLISQNLANSGTYVLLSNI 320 (480)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 320 (480)
..|++++|...++++.+..|.++..+..+..+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 77777778777777777777776555554433
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=2.3e-05 Score=63.19 Aligned_cols=108 Identities=9% Similarity=-0.093 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC----ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHH
Q 038395 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK----VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTL 283 (480)
Q Consensus 210 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 283 (480)
..+..+...+...|++++|...|+...+ ..|+ ...+..+...|...|++++|.+.+++. ...| +...|..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 3444444555555555555555555542 2333 345555666666666777776666655 2233 46677777
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 038395 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNI 320 (480)
Q Consensus 284 i~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 320 (480)
..++...|++++|...++++++..|.+...+..+..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 7888888888888888888888888776665555444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1.7e-05 Score=74.48 Aligned_cols=133 Identities=10% Similarity=-0.034 Sum_probs=73.3
Q ss_pred HHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHH
Q 038395 57 VAAARVLFDDMEE--K-DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN----------------EVTAVAVLSAC 117 (480)
Q Consensus 57 ~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----------------~~t~~~ll~~~ 117 (480)
+++|...|+...+ | +...|..+...|.+.|++++|+..|++..+.. |+ ...+..+..++
T Consensus 129 ~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 129 FEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444332 2 45578888888888899999999888887752 33 24555555555
Q ss_pred HccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHH
Q 038395 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDA 193 (480)
Q Consensus 118 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A 193 (480)
.+.|++++|...++.+.+. .+.+...+..+..+|...|++++|...|++..+ .+...+..+...+.+.|+.++|
T Consensus 207 ~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555543 233444445555555555555555555544432 2334444444444444444444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=6.2e-06 Score=67.29 Aligned_cols=101 Identities=9% Similarity=-0.063 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHH
Q 038395 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGA 286 (480)
Q Consensus 210 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a 286 (480)
..+..+...+...|++++|...|+..... .| +...|..+..+|.+.|++++|.+.|++. ...| ++..|..+..+
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 34445555666677777777777766632 33 4555666667777777777777777766 3334 45677777788
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCchh
Q 038395 287 CRLHGNIALGEKIAEYLISQNLANSGT 313 (480)
Q Consensus 287 ~~~~~~~~~a~~~~~~~~~~~~~~~~~ 313 (480)
+...|++++|...++++++..|+++..
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 888888888888888888888776544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.19 E-value=2.1e-05 Score=64.24 Aligned_cols=90 Identities=11% Similarity=0.017 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 038395 44 LTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120 (480)
Q Consensus 44 ~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~ 120 (480)
|..+...+.+.|++++|...|++..+ | +...|..+..+|.+.|++++|++.|++..+.. +-+...+..+..++...
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~l 117 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRL 117 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 33344444444444444444444331 1 23344444444444444444444444443321 11233333344444444
Q ss_pred CChHHHHHHHHHHH
Q 038395 121 GALESGRWIHSYIE 134 (480)
Q Consensus 121 ~~~~~a~~~~~~~~ 134 (480)
|++++|...++...
T Consensus 118 g~~~eA~~~~~~al 131 (151)
T 3gyz_A 118 KAPLKAKECFELVI 131 (151)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.6e-05 Score=62.57 Aligned_cols=107 Identities=8% Similarity=-0.100 Sum_probs=63.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 038395 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACR 288 (480)
Q Consensus 211 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~ 288 (480)
.+..+...+...|++++|...|+...+.. +.+...|..+..+|.+.|++++|...+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34444445555566666666665555321 223455566666666666666666666655 2233 3566777777777
Q ss_pred hcCChhHHHHHHHHHHHcC------CCCchhHHHHHH
Q 038395 289 LHGNIALGEKIAEYLISQN------LANSGTYVLLSN 319 (480)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~ 319 (480)
..|++++|...++++++.. |.+......+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 7788888888888777777 655544444443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1.2e-05 Score=64.93 Aligned_cols=100 Identities=10% Similarity=-0.043 Sum_probs=62.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 038395 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACR 288 (480)
Q Consensus 212 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~ 288 (480)
+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|...|++. ...| ++..|..+..++.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 334444555666666666666666532 23 3455556666666666666666666665 2233 3556667777777
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchhH
Q 038395 289 LHGNIALGEKIAEYLISQNLANSGTY 314 (480)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~~~~~~ 314 (480)
..|++++|...++++++..|.++...
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~ 123 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHE 123 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchH
Confidence 77888888888887777777665443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.17 E-value=9.2e-06 Score=64.28 Aligned_cols=93 Identities=8% Similarity=-0.024 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc-------hhHHHH
Q 038395 247 HYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS-------GTYVLL 317 (480)
Q Consensus 247 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~l 317 (480)
.+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..+++++++.|.+. .+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4556777888888888888888876 4445 477888899999999999999999999998877543 356778
Q ss_pred HHHHHHcCChhHHHHHHHHHHh
Q 038395 318 SNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 318 ~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
..+|...|++++|.+.|++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 8889999999999999988765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=3.5e-06 Score=72.44 Aligned_cols=50 Identities=16% Similarity=0.156 Sum_probs=24.9
Q ss_pred HhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038395 52 AKQGEVAAARVLFDDMEEK---DVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101 (480)
Q Consensus 52 ~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 101 (480)
...|+++.|.+.|+.-.+. ....|..+...+.+.|++++|++.|++....
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 67 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF 67 (198)
T ss_dssp -------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555555555433221 2345666666677777777777777776653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.17 E-value=3.4e-05 Score=76.11 Aligned_cols=116 Identities=12% Similarity=0.063 Sum_probs=66.8
Q ss_pred HHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 038395 150 INMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226 (480)
Q Consensus 150 i~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 226 (480)
...|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|++.|++..+.. +.+...+..+..++...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3345566777777777765542 345666677777777777777777777766642 223455666666666777777
Q ss_pred HHHHHHHHhhhhcCCcCC-ccHHHHHHHH--HHHcCCHHHHHHHHH
Q 038395 227 EGRRFFNTMKDEYAIEPK-VEHYGCMVNL--LSRAGQVEEAYKLVM 269 (480)
Q Consensus 227 ~a~~~~~~m~~~~~~~p~-~~~~~~li~~--~~~~g~~~~A~~~~~ 269 (480)
+|.+.|++..+. .|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777666643 232 3334444433 556666666666666
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.16 E-value=4.7e-05 Score=73.89 Aligned_cols=162 Identities=13% Similarity=-0.003 Sum_probs=93.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCCCch----hHHHHHHHHHHhCCCHHHHHHHHHhcCC--------C-ChHH
Q 038395 110 AVAVLSACGQIGALESGRWIHSYIENSRNIKVNV----QVGTALINMYSKCGSLKDARLVFDRVND--------K-DVVV 176 (480)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~y~~~g~~~~A~~~f~~m~~--------~-~~~~ 176 (480)
+..+...|...|+++++.+.+..+.+..+-.++. .+.+.+...+...|+++.|..+++.... . -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4445555555555555555555444321111111 1222233333445666666666654431 1 1345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc--CC--CCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-----cc
Q 038395 177 WNSMIVGYAMHGFGKDALQLFNEMCRI--RL--KPS-DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-----VE 246 (480)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~--~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~ 246 (480)
+..+...|...|++++|..++++.... +. +|. ..++..++..|...|++++|..+++.......-.++ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667777888888888888888776542 11 121 346777788888889999998888876642111122 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 247 HYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 247 ~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
.+..+...+...|++++|...|.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4566666777888888887776655
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.2e-05 Score=65.09 Aligned_cols=105 Identities=13% Similarity=-0.015 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHH
Q 038395 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLG 285 (480)
Q Consensus 209 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~ 285 (480)
...+..+...+...|++++|...|+...+. .| +...|..+...|.+.|++++|...|++. .+.| +...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 345555666666777777777777766642 23 4566677777777788888887777776 3344 4778888999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCchhHHH
Q 038395 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVL 316 (480)
Q Consensus 286 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 316 (480)
++...|++++|...+++++++.|.+...+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 118 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMK 118 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 9999999999999999999999988765543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00023 Score=66.19 Aligned_cols=215 Identities=13% Similarity=0.075 Sum_probs=152.3
Q ss_pred CChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCC-CHHHHHHHHHhcCC---CChHHHHHHHHHHHhc-C-ChHHHH
Q 038395 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG-SLKDARLVFDRVND---KDVVVWNSMIVGYAMH-G-FGKDAL 194 (480)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~-g-~~~~A~ 194 (480)
...++|+++.+.++.. .+.+..+|+.--..+...| .++++++.++.+.. ++..+|+.-...+.+. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 4456889999999874 4556677888777888888 59999999998864 4778898887777776 7 899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH--------HHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCC------
Q 038395 195 QLFNEMCRIRLKPSDITFIGLLSACAHAGLVN--------EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ------ 260 (480)
Q Consensus 195 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--------~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~------ 260 (480)
++++++.+...+ |...|..-.-...+.|..+ ++.+.++.+.+.. .-|...|+.....+.+.++
T Consensus 146 ~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 146 EYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccchH
Confidence 999999875432 5666655444444444444 8888999888541 3356677777777777776
Q ss_pred -HHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCh--------------------hHHHHHHHHHHHcC------CCCc
Q 038395 261 -VEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNI--------------------ALGEKIAEYLISQN------LANS 311 (480)
Q Consensus 261 -~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~--------------------~~a~~~~~~~~~~~------~~~~ 311 (480)
++++++.+++. ...| |...|+-+-..+.+.|.. .........+.... +..+
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 68888888776 4445 678888777777766654 12222222222222 3455
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 312 GTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
.+...|+.+|...|+.++|.++++.+.++
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 56778999999999999999999998643
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.7e-05 Score=62.47 Aligned_cols=90 Identities=14% Similarity=0.107 Sum_probs=57.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC-H---hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---chhHHHHHHHHH
Q 038395 251 MVNLLSRAGQVEEAYKLVMDM-KIEPD-S---VLWGTLLGACRLHGNIALGEKIAEYLISQNLAN---SGTYVLLSNIYA 322 (480)
Q Consensus 251 li~~~~~~g~~~~A~~~~~~m-~~~p~-~---~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~ 322 (480)
+...+.+.|++++|.+.|++. ...|+ . ..+..+..++...|++++|...++++++..|++ +.++..+..+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 444555666666666666665 22232 2 355566666677777777777777777777666 555666777777
Q ss_pred HcCChhHHHHHHHHHHhC
Q 038395 323 AIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 323 ~~g~~~~a~~~~~~m~~~ 340 (480)
..|++++|...++++.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777766553
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.10 E-value=1.5e-05 Score=78.26 Aligned_cols=95 Identities=9% Similarity=-0.023 Sum_probs=76.5
Q ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 038395 245 VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYA 322 (480)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 322 (480)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...|++++++.|.+..++..+..++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 357778888899999999999999887 3344 57889999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHH-HHHHHHh
Q 038395 323 AIGNWDGVAR-VRTLMKE 339 (480)
Q Consensus 323 ~~g~~~~a~~-~~~~m~~ 339 (480)
+.|+.+++.+ .++.|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999988764 4555543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.06 E-value=9.1e-05 Score=58.14 Aligned_cols=97 Identities=10% Similarity=-0.004 Sum_probs=61.4
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhcCCcCCc----cHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHH
Q 038395 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKV----EHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD----SVLWGTLLGA 286 (480)
Q Consensus 216 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~a 286 (480)
...+...|++++|...|+.+.+. .|+. ..+..+...|.+.|++++|...|++. ...|+ ...+..+..+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34455566666666666666543 2322 25555666666777777777766665 22232 4556677777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCchhHH
Q 038395 287 CRLHGNIALGEKIAEYLISQNLANSGTYV 315 (480)
Q Consensus 287 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 315 (480)
+...|++++|...++++++..|+++....
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 88888888888888888888887654433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.06 E-value=4.3e-05 Score=63.08 Aligned_cols=64 Identities=11% Similarity=0.079 Sum_probs=54.8
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 277 ~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
...|..+..++...|+++.|...++++++.+|.++.+|..+..+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4577788888888899999999999999988888888888899999999999999888887654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.05 E-value=2.3e-05 Score=61.46 Aligned_cols=95 Identities=11% Similarity=0.055 Sum_probs=76.6
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-------chhHHH
Q 038395 246 EHYGCMVNLLSRAGQVEEAYKLVMDM-KIE-PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN-------SGTYVL 316 (480)
Q Consensus 246 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~ 316 (480)
..+..+...+...|++++|...|++. ... .+...+..+...+...|++++|...++++++..|.+ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34566777778888888888888776 222 357778888888889999999999999998877655 678888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhC
Q 038395 317 LSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
++.+|...|++++|.+.+++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999988764
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.04 E-value=4.3e-05 Score=60.83 Aligned_cols=100 Identities=8% Similarity=-0.174 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHH
Q 038395 208 SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLG 285 (480)
Q Consensus 208 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~ 285 (480)
+...+..+...+...|++++|...|....... +.+...+..+...|...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 34455555555556666666666666555321 122445556666666666666666666655 2223 4566777777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC
Q 038395 286 ACRLHGNIALGEKIAEYLISQNLA 309 (480)
Q Consensus 286 a~~~~~~~~~a~~~~~~~~~~~~~ 309 (480)
++...|+++.|...++++++..|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 777777777777777777776665
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.03 E-value=2.6e-05 Score=63.45 Aligned_cols=63 Identities=10% Similarity=-0.075 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHc-------CCCCchhH----HHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 278 VLWGTLLGACRLHGNIALGEKIAEYLISQ-------NLANSGTY----VLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 278 ~~~~~li~a~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
..|..+..++...|++++|+..+++++++ +|++..+| .....++...|++++|...|++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 38888888999999999999999999998 99988888 99999999999999999999988654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.03 E-value=7e-06 Score=63.81 Aligned_cols=82 Identities=11% Similarity=0.035 Sum_probs=49.6
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHH
Q 038395 258 AGQVEEAYKLVMDM-KI---EP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVAR 332 (480)
Q Consensus 258 ~g~~~~A~~~~~~m-~~---~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 332 (480)
.|++++|...|++. .. .| +...|..+...+...|++++|...++++++..|+++.++..+..+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 35555566666555 33 13 245566666666666777777777777777666666666666667777777777776
Q ss_pred HHHHHHh
Q 038395 333 VRTLMKE 339 (480)
Q Consensus 333 ~~~~m~~ 339 (480)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.4e-05 Score=59.43 Aligned_cols=97 Identities=13% Similarity=0.023 Sum_probs=55.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHhHHHHHHHHH
Q 038395 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP---DSVLWGTLLGAC 287 (480)
Q Consensus 212 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~li~a~ 287 (480)
+..+...+...|++++|...++...+.. +.+...+..+...|...|++++|.+.+++. ...| +...|..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 3344444555555555555555554321 122344555555666666666666666555 2223 356666677777
Q ss_pred Hhc-CChhHHHHHHHHHHHcCCCC
Q 038395 288 RLH-GNIALGEKIAEYLISQNLAN 310 (480)
Q Consensus 288 ~~~-~~~~~a~~~~~~~~~~~~~~ 310 (480)
... |++++|.+.++++.+..|++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCC
Confidence 777 77777777777777766654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.02 E-value=4.8e-05 Score=60.03 Aligned_cols=60 Identities=5% Similarity=-0.100 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 038395 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 236 (480)
+|..+...+.+.|++++|++.|++..+.. +-+...|..+..++...|++++|...++...
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444444555555555555555544421 1123344444445555555555555554444
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00016 Score=70.12 Aligned_cols=161 Identities=7% Similarity=-0.099 Sum_probs=117.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCC-----CCh----HHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCC-HH
Q 038395 145 VGTALINMYSKCGSLKDARLVFDRVND-----KDV----VVWNSMIVGYAMHGFGKDALQLFNEMCR----IRLKPS-DI 210 (480)
Q Consensus 145 ~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~ 210 (480)
.+..+...|.+.|++++|.+.+..+.. ++. .+.+.+-..+...|+.++|.+++++... .+..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 356788999999999999999987753 111 2334444455567899999999988754 233333 45
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC----ccHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC--H
Q 038395 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK----VEHYGCMVNLLSRAGQVEEAYKLVMDM-------KIEPD--S 277 (480)
Q Consensus 211 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~ 277 (480)
++..+...+...|++++|..+++.+.....-..+ ...+..++..|...|++++|..++++. +..|. .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 6778888999999999999999987654322222 457888899999999999999998776 21111 3
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038395 278 VLWGTLLGACRLHGNIALGEKIAEYLIS 305 (480)
Q Consensus 278 ~~~~~li~a~~~~~~~~~a~~~~~~~~~ 305 (480)
..+..+...+...++++.|...+.++.+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4566666777788999999998888876
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.02 E-value=5.8e-05 Score=61.51 Aligned_cols=92 Identities=17% Similarity=0.103 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC------CCchh
Q 038395 248 YGCMVNLLSRAGQVEEAYKLVMDM----KIEPD----SVLWGTLLGACRLHGNIALGEKIAEYLISQNL------ANSGT 313 (480)
Q Consensus 248 ~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~------~~~~~ 313 (480)
+..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...+++.++..+ .....
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 334444444455555554444443 00011 34555666667777777777777777766321 11345
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHh
Q 038395 314 YVLLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 314 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
+..+...|...|++++|.+.+++..+
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 67788888888888888888877654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.02 E-value=2.5e-05 Score=61.32 Aligned_cols=110 Identities=5% Similarity=-0.072 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHH
Q 038395 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLL 255 (480)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 255 (480)
.|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++.+.... |+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~----------- 70 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE----------- 70 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH-----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc-----------
Confidence 45555555555666666666666555432 2233444444555555555555555555544221 10
Q ss_pred HHcCCHHHHHHHHHhCCCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHH
Q 038395 256 SRAGQVEEAYKLVMDMKIEPD----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLS 318 (480)
Q Consensus 256 ~~~g~~~~A~~~~~~m~~~p~----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 318 (480)
..++ ..+|..+..++...|+++.|...++++.+..| ++.....+.
T Consensus 71 -----------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~ 119 (131)
T 1elr_A 71 -----------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQ 119 (131)
T ss_dssp -----------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHH
T ss_pred -----------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 0111 44555666666666667777777766666665 333333333
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.00 E-value=5.1e-05 Score=74.67 Aligned_cols=125 Identities=12% Similarity=0.045 Sum_probs=100.4
Q ss_pred HHHccCCHHHHHHHHHHhhhhcC--CcC---C-ccHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HhHHH
Q 038395 218 ACAHAGLVNEGRRFFNTMKDEYA--IEP---K-VEHYGCMVNLLSRAGQVEEAYKLVMDM---------KIEPD-SVLWG 281 (480)
Q Consensus 218 a~~~~g~~~~a~~~~~~m~~~~~--~~p---~-~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~ 281 (480)
.+...|++++|..++++..+... +.| + ..+++.|..+|...|++++|..++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35678999999999887764321 222 2 557899999999999999999988876 34455 56789
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH-----cCCCCchh---HHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 038395 282 TLLGACRLHGNIALGEKIAEYLIS-----QNLANSGT---YVLLSNIYAAIGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 282 ~li~a~~~~~~~~~a~~~~~~~~~-----~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 342 (480)
.|...|...|++++|+.+++++++ +||+.+.+ ...|..++...|++++|..++..+++.-.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999987 67876554 45788888999999999999999987643
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.99 E-value=4.2e-05 Score=62.37 Aligned_cols=95 Identities=14% Similarity=0.031 Sum_probs=48.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC----ccHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-CHhH
Q 038395 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK----VEHYGCMVNLLSRAGQVEEAYKLVMDM-------KIEP-DSVL 279 (480)
Q Consensus 212 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~ 279 (480)
+..+...+...|++++|...++...+...-.++ ...+..+...+...|++++|.+.+++. +..+ ...+
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 333444444445555555544444321100011 223444555555666666665555544 1111 1345
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038395 280 WGTLLGACRLHGNIALGEKIAEYLISQ 306 (480)
Q Consensus 280 ~~~li~a~~~~~~~~~a~~~~~~~~~~ 306 (480)
+..+...+...|++++|...+++.++.
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666677777778888888877777663
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.96 E-value=6.8e-05 Score=71.28 Aligned_cols=88 Identities=6% Similarity=-0.080 Sum_probs=77.2
Q ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 038395 245 VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYA 322 (480)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 322 (480)
...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|...+++++++.|.+...+..+..++.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 567888889999999999999999887 5556 47888999999999999999999999999999999888889998888
Q ss_pred HcCChhHHHH
Q 038395 323 AIGNWDGVAR 332 (480)
Q Consensus 323 ~~g~~~~a~~ 332 (480)
..++.+++.+
T Consensus 353 ~~~~~~~a~k 362 (370)
T 1ihg_A 353 KIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0037 Score=57.74 Aligned_cols=217 Identities=12% Similarity=-0.004 Sum_probs=150.6
Q ss_pred ccCCh-HHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCC----------HHHHHHHHHhcCC---CChHHHHHHHHHH
Q 038395 119 QIGAL-ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS----------LKDARLVFDRVND---KDVVVWNSMIVGY 184 (480)
Q Consensus 119 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~----------~~~A~~~f~~m~~---~~~~~~~~li~~~ 184 (480)
+.|.+ ++|..+.+.+... .|.+..+|+.--..+...+. +++++.+++.+.. ++..+|+.-...+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44544 5788999988853 33445556554444433333 6788888887754 5778999888888
Q ss_pred HhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHc---
Q 038395 185 AMHGF--GKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL-VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRA--- 258 (480)
Q Consensus 185 ~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--- 258 (480)
.+.|+ +++++++++++.+...+ |...|+.-.-.+...|. .+++.+.+..+.+.. +-|...|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHHSCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhhhc
Confidence 88884 89999999999986533 66777766666677787 689999999998542 33466676666666554
Q ss_pred -----------CCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc-----------CChhHHHHHHHHHHHcCCCCchhH
Q 038395 259 -----------GQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLH-----------GNIALGEKIAEYLISQNLANSGTY 314 (480)
Q Consensus 259 -----------g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~ 314 (480)
+.++++++.+++. ...| |...|+-+-..+... +-++++.+.++++++..|++.-.+
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL 275 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence 4578888888877 3344 577787655555444 357899999999999999985554
Q ss_pred HHHHHHH---HHcCChhHHHHHHHHHHhC
Q 038395 315 VLLSNIY---AAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 315 ~~l~~~~---~~~g~~~~a~~~~~~m~~~ 340 (480)
..++... ...|..+++...+.++.+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4443222 2456777888888888754
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=5.1e-05 Score=59.32 Aligned_cols=94 Identities=11% Similarity=0.014 Sum_probs=59.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc
Q 038395 214 GLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLH 290 (480)
Q Consensus 214 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~ 290 (480)
.+...+.+.|++++|...|+...+. .| +...+..+..++.+.|++++|...|++. .+.| +...|..+..++...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3444556667777777777666643 33 3555666666777777777777777665 3344 356677777777777
Q ss_pred CChhHHHHHHHHHHHcCCCC
Q 038395 291 GNIALGEKIAEYLISQNLAN 310 (480)
Q Consensus 291 ~~~~~a~~~~~~~~~~~~~~ 310 (480)
|++++|...++++++..|.+
T Consensus 99 g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHhCcCC
Confidence 77888888887777777754
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.85 E-value=2.2e-05 Score=60.95 Aligned_cols=91 Identities=13% Similarity=0.123 Sum_probs=58.5
Q ss_pred cCCHHHHHHHHHHhhhhcCC-cC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHH
Q 038395 222 AGLVNEGRRFFNTMKDEYAI-EP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGE 297 (480)
Q Consensus 222 ~g~~~~a~~~~~~m~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~ 297 (480)
.|++++|...|+...+. +. .| +...+..+...|.+.|++++|.+.|++. ...| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45566666666666531 10 12 2455666667777777777777777766 3334 4667777888888888888888
Q ss_pred HHHHHHHHcCCCCchh
Q 038395 298 KIAEYLISQNLANSGT 313 (480)
Q Consensus 298 ~~~~~~~~~~~~~~~~ 313 (480)
..++++++..|.++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 8888888888776543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.79 E-value=2.9e-05 Score=72.92 Aligned_cols=147 Identities=8% Similarity=-0.133 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHH
Q 038395 174 VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253 (480)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 253 (480)
...|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 456777777888888999999999887763 454332 22333444433222 1 126777888
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHH-HHcCChhHH
Q 038395 254 LLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIY-AAIGNWDGV 330 (480)
Q Consensus 254 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a 330 (480)
+|.+.|++++|...+++. ...| +...|..+..++...|++++|...+++++++.|.+..++..|.... ...+..+.+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999998888877 3344 5778888888999999999999999999988888877777777663 344566777
Q ss_pred HHHHHHHHhC
Q 038395 331 ARVRTLMKEK 340 (480)
Q Consensus 331 ~~~~~~m~~~ 340 (480)
.+.++.|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 7777777554
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.79 E-value=7.8e-05 Score=61.49 Aligned_cols=67 Identities=16% Similarity=0.091 Sum_probs=56.6
Q ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 038395 245 VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311 (480)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~ 311 (480)
...|..+..+|.+.|++++|...+++. .+.| +...|..+..++...|++++|...++++++++|.++
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 456777888888899999999888877 3344 477888899999999999999999999999999876
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0016 Score=65.50 Aligned_cols=168 Identities=8% Similarity=-0.029 Sum_probs=123.2
Q ss_pred HHHHHHHHHhcCC---CChHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC--
Q 038395 159 LKDARLVFDRVND---KDVVVWNSMIVGYAMHGF----------GKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG-- 223 (480)
Q Consensus 159 ~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-- 223 (480)
-++|.+.++++.. .+..+|+.--..+...|+ ++++++.++++.+...+ +..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 3556777766653 355667766666666666 78888888888875433 5566766666677777
Q ss_pred CHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcC-CHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc----------
Q 038395 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG-QVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLH---------- 290 (480)
Q Consensus 224 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~---------- 290 (480)
+++++.+.++.+.+.. +-+...|+.-.-++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 6688888888888531 234566776667777778 788888888887 4455 577888777766653
Q ss_pred ----CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhH
Q 038395 291 ----GNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDG 329 (480)
Q Consensus 291 ----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 329 (480)
+.++++.+.+++++..+|.+..+|..+...+.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999999999999999999999999988887554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.76 E-value=7.3e-05 Score=70.17 Aligned_cols=149 Identities=12% Similarity=0.027 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038395 143 VQVGTALINMYSKCGSLKDARLVFDRVND--KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220 (480)
Q Consensus 143 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 220 (480)
...+..+...|.+.|++++|...|++... ++.. .+...|+.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 45577788889999999999999998654 2221 1222333344333221 135677777888
Q ss_pred ccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHH-HHhcCChhHH
Q 038395 221 HAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGTLLGA-CRLHGNIALG 296 (480)
Q Consensus 221 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~a-~~~~~~~~~a 296 (480)
+.|++++|...++...+. .| +...|..+..+|...|++++|...|++. .+.|+ ...+..+... ....+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888743 34 4667788888888888888888888887 55554 4445544444 2344567778
Q ss_pred HHHHHHHHHcCCCCc
Q 038395 297 EKIAEYLISQNLANS 311 (480)
Q Consensus 297 ~~~~~~~~~~~~~~~ 311 (480)
...+.+++...|.++
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 888888888777653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.73 E-value=6.7e-05 Score=61.06 Aligned_cols=67 Identities=15% Similarity=0.067 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-C-------CCCC-HhHH----HHHHHHHHhcCChhHHHHHHHHHHHcCCCCchh
Q 038395 247 HYGCMVNLLSRAGQVEEAYKLVMDM-K-------IEPD-SVLW----GTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313 (480)
Q Consensus 247 ~~~~li~~~~~~g~~~~A~~~~~~m-~-------~~p~-~~~~----~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 313 (480)
.|..+..++.+.|++++|+..+++. . +.|+ ...| .....++...|++++|+..|++++++.|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5555666666666666666655554 3 3776 5678 889999999999999999999999999877644
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00026 Score=69.40 Aligned_cols=118 Identities=6% Similarity=-0.093 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 038395 72 VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN----------------EVTAVAVLSACGQIGALESGRWIHSYIEN 135 (480)
Q Consensus 72 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 135 (480)
...|..+...|.+.|++++|+..|++.++. .|+ ...|..+..++.+.+++++|...++.+.+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 456788888888899999999998888764 222 24444444455555555555555555544
Q ss_pred hCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHH
Q 038395 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDA 193 (480)
Q Consensus 136 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A 193 (480)
. .+.+...+..+..+|.+.|++++|...|++..+ .+...|..+...+.+.++.++|
T Consensus 346 ~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 346 L--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp H--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred c--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3 222344444444444444555555444444432 1233444444444444444433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00016 Score=55.69 Aligned_cols=78 Identities=12% Similarity=0.001 Sum_probs=62.7
Q ss_pred HHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 263 EAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 263 ~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
+|.+.|++. ...| +...|..+...+...|++++|...++++++..|.+..++..+..+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555554 3444 47788888888888999999999999999999988888889999999999999999998887654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00024 Score=53.15 Aligned_cols=65 Identities=20% Similarity=0.168 Sum_probs=59.5
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 276 ~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
+...|..+...+...|++++|...++++++.+|.++.+|..+..+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57788899999999999999999999999999999999999999999999999999999887654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.68 E-value=9.7e-05 Score=56.12 Aligned_cols=90 Identities=16% Similarity=0.028 Sum_probs=69.1
Q ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC------chhHHH
Q 038395 245 VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN------SGTYVL 316 (480)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~ 316 (480)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++..|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 445666777788888888888888776 3334 57788888889999999999999999999999887 566777
Q ss_pred HHHHHHHcCChhHHHHHH
Q 038395 317 LSNIYAAIGNWDGVARVR 334 (480)
Q Consensus 317 l~~~~~~~g~~~~a~~~~ 334 (480)
+..++...|+.+.|.+.+
T Consensus 84 ~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHhHhhhHhHH
Confidence 777777777766665544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00041 Score=50.30 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=61.5
Q ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 038395 245 VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYA 322 (480)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 322 (480)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|.++.++..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345666667777788888888877776 2233 46778888888888899999999999998888888888888777776
Q ss_pred HcC
Q 038395 323 AIG 325 (480)
Q Consensus 323 ~~g 325 (480)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00045 Score=65.61 Aligned_cols=118 Identities=9% Similarity=-0.015 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC-------------------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 038395 43 SLTTMLTCYAKQGEVAAARVLFDDMEE-------------------KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103 (480)
Q Consensus 43 ~~~~li~~~~~~g~~~~A~~~f~~~~~-------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 103 (480)
.|..+...+.+.|++++|+..|++..+ .+...|+.+..+|.+.|++++|++.+++.++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 466666677777777777777766543 134466667777777777777777777776642
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHH
Q 038395 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163 (480)
Q Consensus 104 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 163 (480)
+.+...+..+..++...|++++|...++.+.+. .+.+...+..+...+.+.++.+++.
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 224556666666677777777777777766654 2334555555555555555555543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00067 Score=66.66 Aligned_cols=115 Identities=11% Similarity=-0.024 Sum_probs=87.7
Q ss_pred HHHHcCCHHHHHHHHHhC---------CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCc---hhHH
Q 038395 254 LLSRAGQVEEAYKLVMDM---------KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLIS-----QNLANS---GTYV 315 (480)
Q Consensus 254 ~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~-----~~~~~~---~~~~ 315 (480)
.+...|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|+.+ .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999988776 23344 56889999999999999999999999887 566654 4678
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeeEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHH
Q 038395 316 LLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKA 386 (480)
Q Consensus 316 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 386 (480)
.|...|..+|++++|..++++..+--.. .-...||...+...++.+...+++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999987542110 0023488888888877776655543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0008 Score=65.07 Aligned_cols=116 Identities=10% Similarity=0.072 Sum_probs=88.7
Q ss_pred HHHHHHcCCHHHHHHHHHhC---------CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCc---hh
Q 038395 252 VNLLSRAGQVEEAYKLVMDM---------KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLIS-----QNLANS---GT 313 (480)
Q Consensus 252 i~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~-----~~~~~~---~~ 313 (480)
+..+.+.|++++|..++++. +..|+ ..+++.|..+|...|++++|+.+++++++ .+|..+ .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 45566788999999988766 11222 46789999999999999999999999887 456554 46
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeeEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 038395 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLK 385 (480)
Q Consensus 314 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 385 (480)
++.|...|..+|++++|..++++..+--.. .-...||...+++..+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 788999999999999999999987542110 012348999998888888777665
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00017 Score=54.67 Aligned_cols=94 Identities=13% Similarity=0.054 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCc-------hh
Q 038395 72 VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN-------VQ 144 (480)
Q Consensus 72 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~ 144 (480)
...|..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|...++...+. .|+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY---TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCccHHHHHHH
Confidence 4556666677777777777777777766642 235566666666777777777777777776642 332 34
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhc
Q 038395 145 VGTALINMYSKCGSLKDARLVFDRV 169 (480)
Q Consensus 145 ~~~~li~~y~~~g~~~~A~~~f~~m 169 (480)
.+..+..++...|+.+.|...|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 4445555555555555555554444
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00016 Score=58.69 Aligned_cols=86 Identities=14% Similarity=0.048 Sum_probs=68.8
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 038395 256 SRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGN----------IALGEKIAEYLISQNLANSGTYVLLSNIYAA 323 (480)
Q Consensus 256 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (480)
.+.+.+++|.+.++.. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..+.++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3556677777777766 3344 46777777777776665 4599999999999999999999999999998
Q ss_pred cC-----------ChhHHHHHHHHHHhCC
Q 038395 324 IG-----------NWDGVARVRTLMKEKG 341 (480)
Q Consensus 324 ~g-----------~~~~a~~~~~~m~~~~ 341 (480)
.| ++++|.+.|++..+.+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 75 8999999999987754
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0013 Score=48.32 Aligned_cols=69 Identities=7% Similarity=-0.066 Sum_probs=60.8
Q ss_pred CCCHhHHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 038395 274 EPDSVLWGTLLGACRLHGN---IALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 274 ~p~~~~~~~li~a~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 342 (480)
.+|+..+..+..++...++ .++|..+++++++.+|+++.+...+...+...|++++|...|+++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3567788888888866555 69999999999999999999999999999999999999999999987654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0013 Score=63.42 Aligned_cols=82 Identities=10% Similarity=0.047 Sum_probs=67.1
Q ss_pred cCCHHHHHHHHHhC---------CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCc---hhHHHHHH
Q 038395 258 AGQVEEAYKLVMDM---------KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLIS-----QNLANS---GTYVLLSN 319 (480)
Q Consensus 258 ~g~~~~A~~~~~~m---------~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~-----~~~~~~---~~~~~l~~ 319 (480)
.|++++|..++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|+.+ .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 57888888888765 22344 46789999999999999999999999987 566554 46788999
Q ss_pred HHHHcCChhHHHHHHHHHHh
Q 038395 320 IYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 320 ~~~~~g~~~~a~~~~~~m~~ 339 (480)
.|..+|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999998754
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0024 Score=50.96 Aligned_cols=111 Identities=10% Similarity=-0.094 Sum_probs=60.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHH----cCCHHH
Q 038395 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR----AGQVEE 263 (480)
Q Consensus 188 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 263 (480)
+++++|++.|++..+.| .|+.. +-..|...+.+++|.++|+...+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 35667777777766665 33332 444555556666666666666532 234455555555555 555666
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 038395 264 AYKLVMDMKIEPDSVLWGTLLGACRL----HGNIALGEKIAEYLISQN 307 (480)
Q Consensus 264 A~~~~~~m~~~p~~~~~~~li~a~~~----~~~~~~a~~~~~~~~~~~ 307 (480)
|.++|++.-...++..+..|...|.. .++.++|...+++..+.+
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666555112344445555555555 455555555555555544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0021 Score=46.40 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=59.9
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 276 ~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
+...|..+...+...|++++|...++++++..|.++.++..+..+|...|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35678888899999999999999999999999999999999999999999999999999998764
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.06 Score=41.60 Aligned_cols=139 Identities=9% Similarity=0.113 Sum_probs=96.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHH
Q 038395 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAY 265 (480)
Q Consensus 186 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 265 (480)
..|..++..++..+..... +..-|+-++.-....-+-+-..+.++.+-+-+.+ ..+|++....
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHHH
Confidence 3566666666666665432 3334444444444444445555555555433222 2466777777
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 038395 266 KLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343 (480)
Q Consensus 266 ~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 343 (480)
..+-.++ .+.......+......|.-+.-.++...+....++++.....+.++|.+.|+..+|.+++.+.-++|++
T Consensus 82 ~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 7666665 355666777888999999999999999987778888889999999999999999999999999999985
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0072 Score=48.08 Aligned_cols=113 Identities=6% Similarity=-0.055 Sum_probs=93.3
Q ss_pred CCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCChhHHHH
Q 038395 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRL----HGNIALGEK 298 (480)
Q Consensus 223 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~----~~~~~~a~~ 298 (480)
++.++|..+|+...+. + .|. .. |...|...+.+++|.++|++.-...++..+..|...|.. .++.++|..
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4678999999998853 4 233 33 777888888999999999988323578888888888888 899999999
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHH----cCChhHHHHHHHHHHhCCCc
Q 038395 299 IAEYLISQNLANSGTYVLLSNIYAA----IGNWDGVARVRTLMKEKGVQ 343 (480)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~ 343 (480)
.+++..+.+ ++.++..|..+|.. .++.++|.+.+++..+.|.+
T Consensus 83 ~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 83 YYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 999999874 56788999999999 89999999999999888753
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00069 Score=54.93 Aligned_cols=74 Identities=14% Similarity=0.138 Sum_probs=48.6
Q ss_pred HHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhc-----------CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCh
Q 038395 261 VEEAYKLVMDM-KIEPD-SVLWGTLLGACRLH-----------GNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW 327 (480)
Q Consensus 261 ~~~A~~~~~~m-~~~p~-~~~~~~li~a~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 327 (480)
+++|+..|++. .+.|+ ...|..+..+|... |++++|...|+++++++|++. .|...+. ..
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~-~y~~al~------~~ 134 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT-HYLKSLE------MT 134 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHH------HH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH-HHHHHHH------HH
Confidence 45677666666 44554 56677777777765 489999999999999999885 3322222 23
Q ss_pred hHHHHHHHHHHhCC
Q 038395 328 DGVARVRTLMKEKG 341 (480)
Q Consensus 328 ~~a~~~~~~m~~~~ 341 (480)
++|.+++-.+...+
T Consensus 135 ~ka~el~~~~~~~~ 148 (158)
T 1zu2_A 135 AKAPQLHAEAYKQG 148 (158)
T ss_dssp HTHHHHHHHHHHSS
T ss_pred HhCHhccCcccccc
Confidence 55556555555443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.04 Score=57.83 Aligned_cols=100 Identities=16% Similarity=0.002 Sum_probs=56.4
Q ss_pred HHHhcCChHHHHH-HHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 038395 19 LYARGGDVLSAEK-LFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97 (480)
Q Consensus 19 ~~~~~g~~~~A~~-~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 97 (480)
.....+++++|.+ ++..++. ......++..+.+.|..+.|.++.+.- + .-.....+.|++++|+++.+.
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~~---~-----~~f~~~l~~~~~~~A~~~~~~ 677 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPDQ---D-----QKFELALKVGQLTLARDLLTD 677 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCCH---H-----HHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCCc---c-----hheehhhhcCCHHHHHHHHHh
Confidence 3345778888877 6644441 112266666666677777766654321 0 112233455666666665432
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 038395 98 MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134 (480)
Q Consensus 98 m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 134 (480)
+ .+...|..+...+.+.++++.|.+.|..+.
T Consensus 678 ~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 678 E------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp C------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred h------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 2 345566666666666666666666666553
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0044 Score=59.84 Aligned_cols=93 Identities=15% Similarity=0.048 Sum_probs=73.3
Q ss_pred ccCCHHHHHHHHHHhhhhc--CCcCC----ccHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HhHHHHHH
Q 038395 221 HAGLVNEGRRFFNTMKDEY--AIEPK----VEHYGCMVNLLSRAGQVEEAYKLVMDM---------KIEPD-SVLWGTLL 284 (480)
Q Consensus 221 ~~g~~~~a~~~~~~m~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~li 284 (480)
+.|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|..++++. +..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578899999888776432 12232 467889999999999999999998876 34455 56789999
Q ss_pred HHHHhcCChhHHHHHHHHHHH-----cCCCCchh
Q 038395 285 GACRLHGNIALGEKIAEYLIS-----QNLANSGT 313 (480)
Q Consensus 285 ~a~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 313 (480)
..|...|++++|+.+++++++ .||+.+.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999987 57777644
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0075 Score=58.21 Aligned_cols=101 Identities=10% Similarity=-0.033 Sum_probs=77.6
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhcC--CcCC----ccHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-Hh
Q 038395 215 LLSACAHAGLVNEGRRFFNTMKDEYA--IEPK----VEHYGCMVNLLSRAGQVEEAYKLVMDM---------KIEPD-SV 278 (480)
Q Consensus 215 ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~ 278 (480)
.+..+.+.|++++|..+++...+... +.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 34556677899999999988764321 2222 456888899999999999999988876 34454 56
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCchhHH
Q 038395 279 LWGTLLGACRLHGNIALGEKIAEYLIS-----QNLANSGTYV 315 (480)
Q Consensus 279 ~~~~li~a~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 315 (480)
+++.|...|...|++++|+.+++++++ .||+.+.+-.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 789999999999999999999999887 6787765443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.034 Score=55.77 Aligned_cols=166 Identities=8% Similarity=-0.006 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCC----------hHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhC
Q 038395 88 ANEALVLFRRMLAEKVEP-NEVTAVAVLSACGQIGA----------LESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156 (480)
Q Consensus 88 ~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 156 (480)
.++|++.++++... .| +...|+.--.++...++ ++++...++.+.+. .+.+..+|+.-...+.+.
T Consensus 45 ~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 45 DESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 45566666666663 33 33344444444444444 56666666666653 344555666555566666
Q ss_pred C--CHHHHHHHHHhcCC---CChHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--------
Q 038395 157 G--SLKDARLVFDRVND---KDVVVWNSMIVGYAMHG-FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA-------- 222 (480)
Q Consensus 157 g--~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-------- 222 (480)
| +++++.+.++++.+ +|..+|+--...+.+.| .++++++.++++.+..+. |...|......+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 6 45666666666543 35556666555555666 566666666666554322 444444433333331
Q ss_pred ------CCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCH
Q 038395 223 ------GLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQV 261 (480)
Q Consensus 223 ------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~ 261 (480)
+.++++.+.+..+... .| +...|.-+-..+.+.++.
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~---~P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHH---CSSCSHHHHHHHHHHSCCCCC
T ss_pred cccccHHHHHHHHHHHHHHHhh---CCCCccHHHHHHHHHhcCCCc
Confidence 3456666666665532 33 355566555555555553
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0048 Score=47.01 Aligned_cols=78 Identities=14% Similarity=0.042 Sum_probs=49.1
Q ss_pred HHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 038395 228 GRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLI 304 (480)
Q Consensus 228 a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~ 304 (480)
+...|+...+ ..| +...+..+...|.+.|++++|...|++. ...| +...|..+..++...|++++|...+++++
T Consensus 4 a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444555542 123 3455666666667777777777776665 2233 35667777777777777777777777777
Q ss_pred HcCC
Q 038395 305 SQNL 308 (480)
Q Consensus 305 ~~~~ 308 (480)
+..|
T Consensus 81 ~~~~ 84 (115)
T 2kat_A 81 AAAQ 84 (115)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 7655
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0045 Score=45.98 Aligned_cols=58 Identities=16% Similarity=0.076 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038395 143 VQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEM 200 (480)
Q Consensus 143 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 200 (480)
...+..+...|.+.|++++|...|++..+ .+...|..+..+|...|++++|++.|++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444444444444444444444322 12334444444444444444444444443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.074 Score=55.79 Aligned_cols=97 Identities=15% Similarity=0.048 Sum_probs=46.1
Q ss_pred HhcCCHHHHHH-HHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 038395 52 AKQGEVAAARV-LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130 (480)
Q Consensus 52 ~~~g~~~~A~~-~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~ 130 (480)
...+++++|.+ ++..++. ......++..+.+.|.+++|+++.+. .. .-+......|+++.|.++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHH
Confidence 34566666666 4433330 11225555666666666666654321 10 0112233445555555543
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhc
Q 038395 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV 169 (480)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m 169 (480)
+. ..+...|..|..++.+.|+++.|.+.|.++
T Consensus 676 ~~-------~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 676 TD-------ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp TT-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred Hh-------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 21 123445555555555555555555555443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.011 Score=47.24 Aligned_cols=102 Identities=11% Similarity=0.016 Sum_probs=72.3
Q ss_pred HHHHHHHhC--CCCCCHhHHHHHHHHHHhcC---ChhHHHHHHHHHHHcC-C-CCchhHHHHHHHHHHcCChhHHHHHHH
Q 038395 263 EAYKLVMDM--KIEPDSVLWGTLLGACRLHG---NIALGEKIAEYLISQN-L-ANSGTYVLLSNIYAAIGNWDGVARVRT 335 (480)
Q Consensus 263 ~A~~~~~~m--~~~p~~~~~~~li~a~~~~~---~~~~a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~~~ 335 (480)
.+.+-|.+. .-.++..+.-.+..++.+.+ ++++|..+++.+.+.+ | .+...+..|.-+|.+.|++++|.+.++
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~ 95 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 95 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 344444443 12367777777778888877 6668999999988887 6 345677788888899999999999998
Q ss_pred HHHhCCCccCCceeeEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcc
Q 038395 336 LMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYV 390 (480)
Q Consensus 336 ~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 390 (480)
.+.+. .|...++......+.+.+.+.|++
T Consensus 96 ~lL~i--------------------------eP~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 96 GLLQT--------------------------EPQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp HHHHH--------------------------CTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHhc--------------------------CCCCHHHHHHHHHHHHHHHHhhHH
Confidence 88764 344455555555566777777765
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.039 Score=51.32 Aligned_cols=137 Identities=9% Similarity=-0.021 Sum_probs=62.4
Q ss_pred CChHHHHHHHHHHHh--cC---ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHc----cC-C---HHHHHHHHHHhhh
Q 038395 172 KDVVVWNSMIVGYAM--HG---FGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAH----AG-L---VNEGRRFFNTMKD 237 (480)
Q Consensus 172 ~~~~~~~~li~~~~~--~g---~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~----~g-~---~~~a~~~~~~m~~ 237 (480)
.+...|...+.+... .+ ...+|..+|++..+. .|+- ..+..+.-++.. .+ . .......+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 466777777765443 23 346888888888874 5553 334333333320 00 0 0000011111100
Q ss_pred hcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038395 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310 (480)
Q Consensus 238 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~ 310 (480)
....+.+...|.++.-.+...|++++|...++++ .+.|+...|..+...+...|+.++|...++++..++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 0011223444444444444445555555555554 233444444444445555555555555555555555543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.012 Score=43.20 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=51.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHh-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhH
Q 038395 251 MVNLLSRAGQVEEAYKLVMDM-KIEP-DSV-LWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTY 314 (480)
Q Consensus 251 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 314 (480)
....+.+.|++++|.+.+++. ...| +.. .|..+..++...|++++|...++++++.+|.+..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 455677888899998888877 3344 456 788888899999999999999999999999887665
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0081 Score=44.17 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=54.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCch-hHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 283 LLGACRLHGNIALGEKIAEYLISQNLANSG-TYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 283 li~a~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
....+...|++++|...++++++..|.++. .+..+..+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456678899999999999999999999998 99999999999999999999999988654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.072 Score=49.53 Aligned_cols=62 Identities=15% Similarity=0.131 Sum_probs=35.3
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 038395 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 236 (480)
+..+|.++...+...|++++|...+++....+ |+...|..+-..+.-.|+.++|.+.+++..
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44555555544555566666666666665543 555555555555556666666666665555
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.31 Score=40.00 Aligned_cols=130 Identities=16% Similarity=0.176 Sum_probs=82.5
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 038395 150 INMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR 229 (480)
Q Consensus 150 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 229 (480)
.+....+|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+..+ |..+.-.|.-.|+.+.-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34556788888888887766 4567888888888888888888888887643 333444455567766655
Q ss_pred HHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 038395 230 RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYL 303 (480)
Q Consensus 230 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~ 303 (480)
.+-+....+ | -++.....+.-.|+++++.++|.+.+.-|.... ....+|-.+.|.++.+.+
T Consensus 81 kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 544433321 1 245556667778888888888888764332221 122355666666665544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.63 Score=38.14 Aligned_cols=102 Identities=13% Similarity=0.085 Sum_probs=58.8
Q ss_pred HHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 038395 51 YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130 (480)
Q Consensus 51 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~ 130 (480)
..++|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.|...|+.+.-..+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34577777777776665 3456777777777777777777777766533 333444444556665555444
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 038395 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170 (480)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 170 (480)
+..... |- ++.....+.-.|+++++.++|.+..
T Consensus 84 ~iA~~~-g~------~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 84 NIAQTR-ED------FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHT-TC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHC-cc------HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 443332 21 2333444445566666666665543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.059 Score=40.16 Aligned_cols=69 Identities=6% Similarity=-0.068 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-----C----CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHH
Q 038395 247 HYGCMVNLLSRAGQVEEAYKLVMDM-----K----IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV 315 (480)
Q Consensus 247 ~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 315 (480)
-+-.|...+.+.|+++.|...|+.. + -.+...++..|..++.+.|+++.|...++++++..|.++.+..
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3445556666666666666666554 1 1234677888899999999999999999999999998865543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.066 Score=39.03 Aligned_cols=67 Identities=10% Similarity=0.062 Sum_probs=44.9
Q ss_pred CCccHHHHHHHHHHHcCC---HHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 038395 243 PKVEHYGCMVNLLSRAGQ---VEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309 (480)
Q Consensus 243 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~ 309 (480)
.++..+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|...++++++.+|+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 345556666666654443 57777777766 3344 3566666777777888888888888888887776
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.054 Score=48.32 Aligned_cols=87 Identities=14% Similarity=0.146 Sum_probs=68.6
Q ss_pred HHHHHHHHHhC-CCCCC---HhHHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCC-CchhHHHHHHHHHHc-CChhH
Q 038395 261 VEEAYKLVMDM-KIEPD---SVLWGTLLGACRL-----HGNIALGEKIAEYLISQNLA-NSGTYVLLSNIYAAI-GNWDG 329 (480)
Q Consensus 261 ~~~A~~~~~~m-~~~p~---~~~~~~li~a~~~-----~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-g~~~~ 329 (480)
...|...+++. .+.|+ ...|..|...|.. .|+.++|++.|+++++++|+ +..+++.....++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34566666665 55666 5678888888888 49999999999999999996 488999999999884 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 038395 330 VARVRTLMKEKGVQKEPG 347 (480)
Q Consensus 330 a~~~~~~m~~~~~~~~~~ 347 (480)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998876653343
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.07 E-value=0.17 Score=38.93 Aligned_cols=65 Identities=6% Similarity=-0.118 Sum_probs=33.7
Q ss_pred CCHhHHHHHHHHHHhcCChhH---HHHHHHHHHHcC-C-CCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 038395 275 PDSVLWGTLLGACRLHGNIAL---GEKIAEYLISQN-L-ANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 275 p~~~~~~~li~a~~~~~~~~~---a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
|+..+--.+..++.++.+... +..+++.+.+.+ | ........|+-++.+.|++++|.+.++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444445555544333 555555555544 3 1223344555566666666666666666554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.51 E-value=0.16 Score=40.53 Aligned_cols=71 Identities=10% Similarity=-0.083 Sum_probs=45.8
Q ss_pred CCccHHHHHHHHHHHcC---CHHHHHHHHHhC-CCC-C--CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchh
Q 038395 243 PKVEHYGCMVNLLSRAG---QVEEAYKLVMDM-KIE-P--DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313 (480)
Q Consensus 243 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 313 (480)
++..+.-.+.-++++.+ +++++..+|++. ... | +...+..|.-++.+.|++++|.+.++.+++.+|++..+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 34444444444555554 344555555544 112 3 23445567778899999999999999999999988544
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=5.3 Score=40.15 Aligned_cols=113 Identities=8% Similarity=0.011 Sum_probs=61.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHH
Q 038395 189 FGKDALQLFNEMCRIRLKPSDITFI----GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264 (480)
Q Consensus 189 ~~~~A~~l~~~m~~~g~~p~~~t~~----~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 264 (480)
+.+.|..+|......+ ..+..... .+.......+...++...+...... .++.....-.+..-.+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 6677888887775433 22222222 2222233334344555555554322 23322233333334466888888
Q ss_pred HHHHHhCCCCC-C-HhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038395 265 YKLVMDMKIEP-D-SVLWGTLLGACRLHGNIALGEKIAEYLIS 305 (480)
Q Consensus 265 ~~~~~~m~~~p-~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~ 305 (480)
.+.|+.|+..+ + ....--+..++...|+.++|..+++.+.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888885332 1 22223345566777888888888888764
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.05 E-value=0.29 Score=36.25 Aligned_cols=65 Identities=14% Similarity=-0.035 Sum_probs=54.7
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC-------CCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQN-------LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 276 ~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
+..-+..|...+...++++.|...++.+++.. +..+..+..|..+|.+.|+++.|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556678889999999999999999998842 334567889999999999999999999998764
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.33 E-value=2.3 Score=33.26 Aligned_cols=91 Identities=11% Similarity=0.023 Sum_probs=62.9
Q ss_pred CCCHhHHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCcee
Q 038395 274 EPDSVLWGTLLGACRLHGN---IALGEKIAEYLISQNLANS-GTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCS 349 (480)
Q Consensus 274 ~p~~~~~~~li~a~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 349 (480)
.|+..+--.+..++.++.+ ..++..+++.+.+.+|... .....|+-++.+.|++++|.+..+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--------- 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--------- 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---------
Confidence 4566655556666666654 4578888888888777533 34567788899999999999988888764
Q ss_pred eEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcc
Q 038395 350 SIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYV 390 (480)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 390 (480)
.|...++...-..+.+.|.+.|++
T Consensus 107 -----------------eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 107 -----------------ERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred -----------------CCCcHHHHHHHHHHHHHHHHhchh
Confidence 344455555555566777777765
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.33 E-value=6 Score=38.01 Aligned_cols=186 Identities=8% Similarity=0.015 Sum_probs=108.4
Q ss_pred CChHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhH--HHHHHHHHHhCCC
Q 038395 86 GLANEALVLFRRMLA-----EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQV--GTALINMYSKCGS 158 (480)
Q Consensus 86 g~~~~A~~~~~~m~~-----~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~li~~y~~~g~ 158 (480)
|++++|++.+..+.+ ............++..|...++++...+.+..+.+.+|..+...+ ...++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 455666655544432 123334556666777777777777766666655554343332211 1122222222222
Q ss_pred H--HHHHHHHHhcCC---C-------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHc
Q 038395 159 L--KDARLVFDRVND---K-------DVVVWNSMIVGYAMHGFGKDALQLFNEMCRI--RLKPS---DITFIGLLSACAH 221 (480)
Q Consensus 159 ~--~~A~~~f~~m~~---~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~---~~t~~~ll~a~~~ 221 (480)
. +.-..+.+.... . .......|...|...|++.+|.+++.++... |..+. ...+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 2 222333333321 1 1223456778888999999999999988643 22222 2356667788889
Q ss_pred cCCHHHHHHHHHHhhhh-cCCcCC----ccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 222 AGLVNEGRRFFNTMKDE-YAIEPK----VEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 222 ~g~~~~a~~~~~~m~~~-~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
.+++.+|..++..+... ....++ ...|.+++..+...+++.+|.+.|.+.
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999998887531 111222 345677888888899999998877766
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.27 E-value=2.3 Score=33.00 Aligned_cols=84 Identities=13% Similarity=0.045 Sum_probs=59.7
Q ss_pred hCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038395 155 KCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNT 234 (480)
Q Consensus 155 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 234 (480)
.||++......+-.+.. +....+.-+..+...|+-++-.+++..+.. +.+|+......+..||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 45666655555555432 344556667778888888888888888543 3567788888888899999999998888888
Q ss_pred hhhhcCC
Q 038395 235 MKDEYAI 241 (480)
Q Consensus 235 m~~~~~~ 241 (480)
+.+. |+
T Consensus 151 AC~k-G~ 156 (172)
T 1wy6_A 151 ACKK-GE 156 (172)
T ss_dssp HHHT-TC
T ss_pred HHHh-hh
Confidence 8754 54
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.90 E-value=1.5 Score=45.09 Aligned_cols=54 Identities=9% Similarity=0.015 Sum_probs=49.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038395 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 285 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
.-|...|+++.|+.+.+++...-|.+..+|..|+.+|...|+|+.|+-.+..+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 446678999999999999999999999999999999999999999999998874
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=92.05 E-value=3.1e-05 Score=73.42 Aligned_cols=262 Identities=12% Similarity=0.061 Sum_probs=162.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 038395 41 LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120 (480)
Q Consensus 41 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~ 120 (480)
+..|..|..++...+++.+|++.|=+.. |...|..+|....+.|.+++-++.+...++..-.|.. =+.++-+|++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA~--Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~I--DteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKAD--DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV--ETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCCS--CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTT--THHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhCC--ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--HHHHHHHHHhh
Confidence 4568888888888888877777664443 5556777888888888888888877666555333433 34677788888
Q ss_pred CChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038395 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM 200 (480)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 200 (480)
+++.+-++++ -.||..-...+.+-+...|.++.|.-+|..+.. |.-|...+.+.|++..|.+.-++
T Consensus 130 ~rL~elEefl--------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArK- 195 (624)
T 3lvg_A 130 NRLAELEEFI--------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARK- 195 (624)
T ss_dssp CSSSTTTSTT--------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTT-
T ss_pred CcHHHHHHHH--------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHh-
Confidence 7766543332 245555566777777788888888777776653 33344445566666666553322
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHh
Q 038395 201 CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIE-PDSV 278 (480)
Q Consensus 201 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~ 278 (480)
.-+..||..+-.+|...+.+.-|...--.+. ..+.....++..|-+.|.+++-..+++.- |.+ ....
T Consensus 196 -----Ans~ktWKeV~~ACvd~~EfrLAqicGLniI------vhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmG 264 (624)
T 3lvg_A 196 -----ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMG 264 (624)
T ss_dssp -----CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH------CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHH
T ss_pred -----cCChhHHHHHHHHHhCchHHHHHHHhcchhc------ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHH
Confidence 2355678888888888877766654333332 11222334566677788888877777765 433 4677
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH-cC-CC------CchhHHHHHHHHHHcCChhHHHH
Q 038395 279 LWGTLLGACRLHGNIALGEKIAEYLIS-QN-LA------NSGTYVLLSNIYAAIGNWDGVAR 332 (480)
Q Consensus 279 ~~~~li~a~~~~~~~~~a~~~~~~~~~-~~-~~------~~~~~~~l~~~~~~~g~~~~a~~ 332 (480)
+|+-|.-.|++.. .++-.+.++.... .+ |. ....|.-+.-.|.+-..|+.|..
T Consensus 265 mFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 265 MFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 7777777777663 3333333332221 12 11 23456677777777777776653
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=91.88 E-value=0.44 Score=42.53 Aligned_cols=79 Identities=9% Similarity=0.045 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcc-----CChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhC-CCH
Q 038395 89 NEALVLFRRMLAEKVEPN---EVTAVAVLSACGQI-----GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC-GSL 159 (480)
Q Consensus 89 ~~A~~~~~~m~~~g~~pd---~~t~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~-g~~ 159 (480)
.+|..++++..+ +.|+ ...|..+...|.+. |+.++|++.|++..+. .-.-+..++....+.|+.. |+.
T Consensus 180 ~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L-nP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY-CSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH-CCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHHhcCCH
Confidence 455555555555 3444 34555555556553 6666666666666654 2111345555556666653 666
Q ss_pred HHHHHHHHhcC
Q 038395 160 KDARLVFDRVN 170 (480)
Q Consensus 160 ~~A~~~f~~m~ 170 (480)
+.|.+.+++..
T Consensus 257 ~~a~~~L~kAL 267 (301)
T 3u64_A 257 AGFDEALDRAL 267 (301)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.43 E-value=0.47 Score=44.92 Aligned_cols=69 Identities=13% Similarity=-0.004 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh-----CCCccCCce
Q 038395 280 WGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE-----KGVQKEPGC 348 (480)
Q Consensus 280 ~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~ 348 (480)
...++.++...|+.+++...+..+...+|-+...+..|+.+|.+.|+..+|.+.|+...+ .|+.|.|..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345667788889999999999999999999888999999999999999999999988753 488776654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=91.37 E-value=0.00012 Score=69.61 Aligned_cols=164 Identities=12% Similarity=0.071 Sum_probs=113.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCHHHHHHHHHHHHHcC
Q 038395 9 DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE--KDVVCWNVMIDGYAQHG 86 (480)
Q Consensus 9 d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g 86 (480)
.+.+|+.|..++.+.|.+.+|.+-| ++..|+..|..+|.+..+.|.+++-.+.+...++ ++...=+.|+-+|++.+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 130 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhC
Confidence 3457888999999999888887665 3445777788999999999999999998877665 45566679999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHH
Q 038395 87 LANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166 (480)
Q Consensus 87 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f 166 (480)
+..+-.+++ -.||..-...+..-|...|.++.|+-+|..+.. |.-|...+.+.|++..|.+.-
T Consensus 131 rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN----------~akLAstLV~L~~yq~AVdaA 193 (624)
T 3lvg_A 131 RLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------FGRLASTLVHLGEYQAAVDGA 193 (624)
T ss_dssp SSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC----------CTTTSSSSSSCSGGGSSTTTT
T ss_pred cHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc----------HHHHHHHHHHHHHHHHHHHHH
Confidence 987754443 246776677888888888888888777765432 233344455556665554332
Q ss_pred HhcCCCChHHHHHHHHHHHhcCChHHH
Q 038395 167 DRVNDKDVVVWNSMIVGYAMHGFGKDA 193 (480)
Q Consensus 167 ~~m~~~~~~~~~~li~~~~~~g~~~~A 193 (480)
++. .++.+|-.+-.+|...+.+.-|
T Consensus 194 rKA--ns~ktWKeV~~ACvd~~EfrLA 218 (624)
T 3lvg_A 194 RKA--NSTRTWKEVCFACVDGKEFRLA 218 (624)
T ss_dssp TTC--CSSCSHHHHTHHHHHSCTTTTT
T ss_pred Hhc--CChhHHHHHHHHHhCchHHHHH
Confidence 222 3455666666666655555433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.07 E-value=2 Score=34.02 Aligned_cols=56 Identities=5% Similarity=-0.022 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHH
Q 038395 259 GQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV 315 (480)
Q Consensus 259 g~~~~A~~~~~~m---~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 315 (480)
+++++|.++|+.+ ..+- ...|-....--.++|++..|.+++.+.+...|.+.....
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 5666666666666 1111 667777667677888999999999998888887654433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=90.89 E-value=1.9 Score=33.02 Aligned_cols=72 Identities=10% Similarity=-0.112 Sum_probs=42.3
Q ss_pred CCccHHHHHHHHHHHcCCHHH---HHHHHHhC-CCC-C--CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhH
Q 038395 243 PKVEHYGCMVNLLSRAGQVEE---AYKLVMDM-KIE-P--DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTY 314 (480)
Q Consensus 243 p~~~~~~~li~~~~~~g~~~~---A~~~~~~m-~~~-p--~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 314 (480)
|+..+--.+.-++.+.....+ +..++++. ... | .-...-.|.-++.+.|+++.|.+.++.+++..|.+..+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 344444444444444444333 44455444 111 2 122334466688889999999999999999999875443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=90.84 E-value=1.2 Score=35.15 Aligned_cols=55 Identities=7% Similarity=-0.064 Sum_probs=44.3
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 038395 289 LHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343 (480)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 343 (480)
..+|+++|.++|+.+++....-+..|...+..-.++|+...|.+++......+.+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 3379999999999998874444556777777778999999999999998876644
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=90.37 E-value=3.9 Score=29.61 Aligned_cols=87 Identities=16% Similarity=0.189 Sum_probs=63.1
Q ss_pred CChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038395 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM 200 (480)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 200 (480)
...++|..|-+.+... +. ...+--.-+..+...|++++|..+.+...-||.+.|-+|-. .+.|..+++..-+.++
T Consensus 21 H~HqEA~tIAdwL~~~-~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 21 HYHEEANCIAEWLHLK-GE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRL 95 (116)
T ss_dssp TCHHHHHHHHHHHHHT-TC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-Cc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3567888888877765 33 33333334456778999999999999999999999988765 4678888888888787
Q ss_pred HHcCCCCCHHHHH
Q 038395 201 CRIRLKPSDITFI 213 (480)
Q Consensus 201 ~~~g~~p~~~t~~ 213 (480)
..+| .|....|.
T Consensus 96 a~sg-~p~~q~Fa 107 (116)
T 2p58_C 96 ARSQ-DPRIQTFV 107 (116)
T ss_dssp TTCC-CHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 7665 44444443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=90.28 E-value=1.9 Score=31.34 Aligned_cols=74 Identities=19% Similarity=0.234 Sum_probs=56.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHH
Q 038395 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268 (480)
Q Consensus 189 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 268 (480)
+.-++.+-++.+....+.|+.....+.|.||.+.+++..|.++|+.++.+. .+....|..+++ +-..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq---------ElkPtl 93 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ---------ELRPTL 93 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH---------HHhhHH
Confidence 455677777788788899999999999999999999999999999988654 344556777765 344556
Q ss_pred HhCCC
Q 038395 269 MDMKI 273 (480)
Q Consensus 269 ~~m~~ 273 (480)
+++|+
T Consensus 94 ~ELGI 98 (109)
T 1v54_E 94 NELGI 98 (109)
T ss_dssp HHHTC
T ss_pred HHhCC
Confidence 66654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.82 E-value=2.4 Score=32.69 Aligned_cols=66 Identities=12% Similarity=-0.012 Sum_probs=40.9
Q ss_pred CCHhHHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCC-chhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 275 PDSVLWGTLLGACRLHGN---IALGEKIAEYLISQNLAN-SGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 275 p~~~~~~~li~a~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
|+..+--.+..++.+..+ ...+..+++.+.+.+|.. ......|+-++.+.|++++|.+..+.+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 444444444445555443 446777777777766632 334556777777888888888777777543
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.79 E-value=3.6 Score=29.73 Aligned_cols=87 Identities=13% Similarity=0.100 Sum_probs=63.4
Q ss_pred CChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038395 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM 200 (480)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 200 (480)
...++|..|-+.+... +. ...+--.-+..+...|++++|..+.+...-||.+.|-+|-. .+.|..+++..-+.++
T Consensus 20 H~HqEA~tIAdwL~~~-~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 20 HCHEEALCIAEWLERL-GQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TCHHHHHHHHHHHHHT-TC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-Cc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3567888888877765 33 33333334456778999999999999999999999988765 4788888888888788
Q ss_pred HHcCCCCCHHHHH
Q 038395 201 CRIRLKPSDITFI 213 (480)
Q Consensus 201 ~~~g~~p~~~t~~ 213 (480)
..+| .|....|.
T Consensus 95 a~sg-~p~~q~Fa 106 (115)
T 2uwj_G 95 GGSS-DPALADFA 106 (115)
T ss_dssp HTCS-SHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 7765 44444443
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=89.23 E-value=8.8 Score=32.06 Aligned_cols=188 Identities=14% Similarity=0.078 Sum_probs=124.0
Q ss_pred CChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 038395 24 GDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103 (480)
Q Consensus 24 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 103 (480)
++.+....+...+..+|...-...+..+.+.|..+....+.+.+..+|...-...+.++.+.+.. ++...+.++..
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~--- 91 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK--- 91 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---
Confidence 44555555666666778777777788888888755555666667778877777777778887764 34455555543
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHH
Q 038395 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVG 183 (480)
Q Consensus 104 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~ 183 (480)
.+|...-...+.+..+.++.+....+. .+.+ .++..+-...+.++.+.|+.+....+...+.+++...-...+.+
T Consensus 92 ~~~~~vr~~a~~aL~~~~~~~~~~~L~-~~l~----d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~a 166 (211)
T 3ltm_A 92 DEDGWVRQSAAVALGQIGDERAVEPLI-KALK----DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADA 166 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT----CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHH-HHHh----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 467777778888888888754333333 3332 46777777788888888876655555566666777777777888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 038395 184 YAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224 (480)
Q Consensus 184 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 224 (480)
+.+.+. .++...+..+.+. ++...-...+.++.+.+.
T Consensus 167 L~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 167 LGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC---
T ss_pred HHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcCC
Confidence 888876 4667777777653 455555555666655443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.96 E-value=2.5 Score=30.74 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 038395 89 NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151 (480)
Q Consensus 89 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 151 (480)
=+..+-++.+....+.|++....+.++||-+.+++..|.++++-++.. ......+|..+++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 355666677777778888888889999999999999998888888764 3333456666553
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=86.93 E-value=28 Score=36.62 Aligned_cols=249 Identities=8% Similarity=0.022 Sum_probs=127.1
Q ss_pred HHHhcCCHHHHHHHHhhcCC----CC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCC---HHH--HHHHHHH
Q 038395 50 CYAKQGEVAAARVLFDDMEE----KD--VVCWNVMIDGYAQHGLANEALVLFRRMLAEKV--EPN---EVT--AVAVLSA 116 (480)
Q Consensus 50 ~~~~~g~~~~A~~~f~~~~~----~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~pd---~~t--~~~ll~~ 116 (480)
|....|+.++++.+++.... .+ +..-..+.-+.+..|..+++++++...+...- .-+ ... -..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34667888888888887654 22 22333444566677777778887777654311 001 111 1122222
Q ss_pred HHccCC-hHHHHHHHHHHHHhCCCCCch--hHHHHHHHHHHhCCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCCh
Q 038395 117 CGQIGA-LESGRWIHSYIENSRNIKVNV--QVGTALINMYSKCGSLKDARLVFDRVND--K-DVVVWNSMIVGYAMHGFG 190 (480)
Q Consensus 117 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~ 190 (480)
.+-.|. -+++...+..+... . .+.. ....+|...|.-.|+-+....++..+.+ . ++.-.-++.-++...|+.
T Consensus 463 la~~GS~~eev~e~L~~~L~d-d-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYN-D-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHT-C-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCCHHHHHHHHHHHhc-C-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 222332 23444555554443 1 1111 1222344455566777776777665432 2 222233344455577898
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHH
Q 038395 191 KDALQLFNEMCRIRLKPSDITFI---GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL 267 (480)
Q Consensus 191 ~~A~~l~~~m~~~g~~p~~~t~~---~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 267 (480)
+.+..+.+.+... .....-|. ++.-+|+..|+.....+++..+..+ ...++.....+.-++...|+.+.+.++
T Consensus 541 e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 541 ELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 8888888888763 21223333 3345678889988888888888753 122232222222333346666666667
Q ss_pred HHhCC--CCCCHhHHHHHHHHHHhcCCh-hHHHHHHHHHH
Q 038395 268 VMDMK--IEPDSVLWGTLLGACRLHGNI-ALGEKIAEYLI 304 (480)
Q Consensus 268 ~~~m~--~~p~~~~~~~li~a~~~~~~~-~~a~~~~~~~~ 304 (480)
++.+. ..|.+..-..+.-+....|+. ..+...+..+.
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 66552 223332222233333333332 34555555554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.03 E-value=40 Score=36.77 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=12.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc
Q 038395 148 ALINMYSKCGSLKDARLVFDRV 169 (480)
Q Consensus 148 ~li~~y~~~g~~~~A~~~f~~m 169 (480)
.+..+|..+|++++|...|.+.
T Consensus 847 l~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 847 LKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcCCHHHHHHHHHHH
Confidence 3444555556666665555554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.82 E-value=3.3 Score=39.02 Aligned_cols=55 Identities=5% Similarity=0.004 Sum_probs=26.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 038395 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM 235 (480)
Q Consensus 180 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 235 (480)
++..+...|++++|+..+..+.... +.+...+..++.++...|+..+|.+.|+..
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444445555555555555444321 224445555555555555555555555444
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=85.57 E-value=3.7 Score=31.60 Aligned_cols=74 Identities=19% Similarity=0.234 Sum_probs=57.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHH
Q 038395 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268 (480)
Q Consensus 189 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 268 (480)
+.-+..+-++.+....+.|+.....+.|.+|.+.+++..|.++|+.++.+. .+....|..+++ +-..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq---------ElkPtl 136 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ---------ELRPTL 136 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH---------HHhhHH
Confidence 344666777777778899999999999999999999999999999998643 445667877765 445566
Q ss_pred HhCCC
Q 038395 269 MDMKI 273 (480)
Q Consensus 269 ~~m~~ 273 (480)
+++|+
T Consensus 137 ~ELGI 141 (152)
T 2y69_E 137 NELGI 141 (152)
T ss_dssp HHHTC
T ss_pred HHhCC
Confidence 66654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.42 E-value=3.3 Score=42.55 Aligned_cols=50 Identities=18% Similarity=0.104 Sum_probs=30.1
Q ss_pred HHHHhCCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038395 151 NMYSKCGSLKDARLVFDRVND--K-DVVVWNSMIVGYAMHGFGKDALQLFNEM 200 (480)
Q Consensus 151 ~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m 200 (480)
+.+...|+++.|+++-++... | +-.+|..|..+|...|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344455666666666665542 2 4556666666666666666666666554
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=84.89 E-value=15 Score=30.24 Aligned_cols=183 Identities=14% Similarity=0.083 Sum_probs=113.3
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 038395 28 SAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNE 107 (480)
Q Consensus 28 ~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 107 (480)
.-..+++.+..+|...-...+.++.+.|..+....+.+.+..+|...-...+.++.+.|..+ +...+.++.. .++.
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~ 90 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDG 90 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSH
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCH
Confidence 33445555566676666666777777776555555666666677766666667777777653 4444444443 4677
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Q 038395 108 VTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187 (480)
Q Consensus 108 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 187 (480)
..-...+.+..+.++.+....+.. +.+ .++..+-...+.++.+.|+.+....+...+.+++...-...+.++.+.
T Consensus 91 ~vr~~a~~aL~~~~~~~~~~~L~~-~l~----d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 91 WVRQSAAVALGQIGDERAVEPLIK-ALK----DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp HHHHHHHHHHHHHCCGGGHHHHHH-HTT----CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHH-HHc----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 777777777777777543333333 322 356667777777888877765555555556667777777777777777
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 038395 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223 (480)
Q Consensus 188 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 223 (480)
|.. ++...+..+... ++...-...+.+..+..
T Consensus 166 ~~~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 166 GGE-RVRAAMEKLAET---GTGFARKVAVNYLETHK 197 (201)
T ss_dssp CSH-HHHHHHHHHHHH---CCHHHHHHHHHHHHHCC
T ss_pred Cch-hHHHHHHHHHhC---CCHHHHHHHHHHHHHHH
Confidence 764 566666666653 35555455555555443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=84.58 E-value=29 Score=37.80 Aligned_cols=86 Identities=7% Similarity=0.026 Sum_probs=62.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC-c--hhHHHHHHHHHHhCCCHHHHHHHHHhcCCC--ChHHHHHHHHH
Q 038395 109 TAVAVLSACGQIGALESGRWIHSYIENSRNIKV-N--VQVGTALINMYSKCGSLKDARLVFDRVNDK--DVVVWNSMIVG 183 (480)
Q Consensus 109 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~--~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~ 183 (480)
-|.-++..+.+.+.++.+.++-....+..+-.. + ...|..+...+...|++++|...+-.++.. -......|+..
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~ 980 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQ 980 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 467777888888888888888777776512111 1 236788889999999999999999887653 34567778888
Q ss_pred HHhcCChHHHH
Q 038395 184 YAMHGFGKDAL 194 (480)
Q Consensus 184 ~~~~g~~~~A~ 194 (480)
.+..|+.+.-+
T Consensus 981 lce~~~~~~L~ 991 (1139)
T 4fhn_B 981 LTKQGKINQLL 991 (1139)
T ss_dssp HHHHCCHHHHH
T ss_pred HHhCCChhhhh
Confidence 88888766544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.95 E-value=7.6 Score=31.26 Aligned_cols=113 Identities=13% Similarity=0.092 Sum_probs=60.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC-----CCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCC-CHHHH
Q 038395 45 TTMLTCYAKQGEVAAARVLFDDMEE-----KDV-------VCWNVMIDGYAQHGLANEALVLFRRMLAEK-VEP-NEVTA 110 (480)
Q Consensus 45 ~~li~~~~~~g~~~~A~~~f~~~~~-----~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p-d~~t~ 110 (480)
-.-+..+...|.++.|+-+.+.+.. |++ .+...+..++...|++.+|...|++.++.. .-| +..+.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3345556667777777776666431 332 145556667777788888888877764321 111 11111
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 038395 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171 (480)
Q Consensus 111 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~ 171 (480)
.++-. ...... .. ....+..+---+..+|.+.|+.++|+.+++.++.
T Consensus 104 ~~~~~----~ss~p~---------s~-~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 104 PSTGN----SASTPQ---------SQ-CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ccccc----cCCCcc---------cc-cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 11100 000000 01 2334455555677788888888888888888764
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=83.82 E-value=29 Score=32.54 Aligned_cols=129 Identities=10% Similarity=-0.001 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC---chhHHHHHHHHHHhCC-CHHHHHHHHHhcCC---CChHHH---
Q 038395 108 VTAVAVLSACGQIGALESGRWIHSYIENSRNIKV---NVQVGTALINMYSKCG-SLKDARLVFDRVND---KDVVVW--- 177 (480)
Q Consensus 108 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~y~~~g-~~~~A~~~f~~m~~---~~~~~~--- 177 (480)
.....+...+.+.|+.++..+++.......+.-+ .......+++.+.... ..+.-.++..+..+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666555443211111 1223345555555432 22222222222211 111122
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHccCCHHHHHHHHHHhh
Q 038395 178 ---NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD-----ITFIGLLSACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 178 ---~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~ 236 (480)
.-++..|...|++.+|.+++.++.+.=-+.|. ..+..-+..|...+++.++...+....
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 13555666666666666666666543111121 123333445555666666666665554
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=83.12 E-value=27 Score=31.77 Aligned_cols=166 Identities=14% Similarity=0.104 Sum_probs=99.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHHcc
Q 038395 147 TALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLF----NEMCRIRLKPSDITFIGLLSACAHA 222 (480)
Q Consensus 147 ~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~a~~~~ 222 (480)
.++..=|.+.+++++|.+++..- ...+.+.|+...|-++- +-..+.++++|......|+..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 34445588888888888876542 23445566665555544 4555677888888877777777655
Q ss_pred CCHHH-HHHHHHHhhh---hcC--CcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHH
Q 038395 223 GLVNE-GRRFFNTMKD---EYA--IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALG 296 (480)
Q Consensus 223 g~~~~-a~~~~~~m~~---~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a 296 (480)
..-+- =..+.+.+.+ +.| -.-++.....+...|.+.+++.+|...|- .+..+.+..+..++..+...+.
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~---- 182 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE---- 182 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC----
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC----
Confidence 43211 1222222221 122 12345666778899999999999998884 3544444666655555444433
Q ss_pred HHHHHHHHHcCCCCchhHH-HHHHHHHHcCChhHHHHHHHHHHh
Q 038395 297 EKIAEYLISQNLANSGTYV-LLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
|.....|. -.+--|...++...|..+++...+
T Consensus 183 -----------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 -----------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -----------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22222332 233457778899999888777654
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=82.93 E-value=11 Score=27.22 Aligned_cols=83 Identities=11% Similarity=0.035 Sum_probs=58.3
Q ss_pred ChHHHHHHHhhCC-CCChhHHHHHH--HHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038395 25 DVLSAEKLFATMP-QRSLVSLTTML--TCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101 (480)
Q Consensus 25 ~~~~A~~~~~~m~-~~~~~~~~~li--~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 101 (480)
..++|..+-+... +++ .-..+|| ..+...|++++|..+.+.+.-||..+|-+|.. .+.|..+++..-+.++-.+
T Consensus 21 ~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4566666655543 233 3333444 44678999999999999999999999988865 4788888888888788776
Q ss_pred CCCCCHHHHH
Q 038395 102 KVEPNEVTAV 111 (480)
Q Consensus 102 g~~pd~~t~~ 111 (480)
| .|....|.
T Consensus 98 g-~p~~q~Fa 106 (115)
T 2uwj_G 98 S-DPALADFA 106 (115)
T ss_dssp S-SHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 5 44444443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=82.27 E-value=12 Score=27.11 Aligned_cols=83 Identities=14% Similarity=0.176 Sum_probs=57.9
Q ss_pred ChHHHHHHHhhCC-CCChhHHHHHH--HHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038395 25 DVLSAEKLFATMP-QRSLVSLTTML--TCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101 (480)
Q Consensus 25 ~~~~A~~~~~~m~-~~~~~~~~~li--~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 101 (480)
..++|..+-+... +++ .-..+|| ..+...|++++|..+.+.+.-||..+|-+|.. .+.|..+++..-+.++-..
T Consensus 22 ~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4566666655543 233 3333444 44678999999999999999999999988865 4678888888877777766
Q ss_pred CCCCCHHHHH
Q 038395 102 KVEPNEVTAV 111 (480)
Q Consensus 102 g~~pd~~t~~ 111 (480)
| .|....|.
T Consensus 99 g-~p~~q~Fa 107 (116)
T 2p58_C 99 Q-DPRIQTFV 107 (116)
T ss_dssp C-CHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 5 44444443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=81.08 E-value=32 Score=31.26 Aligned_cols=168 Identities=10% Similarity=0.033 Sum_probs=101.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHH
Q 038395 43 SLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLF----RRMLAEKVEPNEVTAVAVLSACG 118 (480)
Q Consensus 43 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~pd~~t~~~ll~~~~ 118 (480)
.|.++..-|.+.+++++|++++-.- ...+.+.|+...|-++- +-+.+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3556677788889999988875432 23355667766555543 44556678888888877777776
Q ss_pred ccCCh--HH---HHHHHHHHHHhCC--CCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChH
Q 038395 119 QIGAL--ES---GRWIHSYIENSRN--IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGK 191 (480)
Q Consensus 119 ~~~~~--~~---a~~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 191 (480)
....- +. ..+....-.+. | -.-|+.....+...|.+.+++.+|+.-|---.++....+..|+.-+...+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc
Confidence 65532 11 12223333333 3 23467788889999999999999999885322223356655444443333221
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 038395 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237 (480)
Q Consensus 192 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 237 (480)
.+|...-.+++. |...+++..|..+++...+
T Consensus 185 --------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 --------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred --------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 223333344444 4556788888887766654
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=81.04 E-value=6.7 Score=30.23 Aligned_cols=60 Identities=15% Similarity=0.191 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 038395 90 EALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151 (480)
Q Consensus 90 ~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 151 (480)
+..+-++.+....+.|++......+++|-+.+++..|..+++-++.. ..+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 45555666667778889999999999999999999999988888764 3344556666553
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.87 E-value=11 Score=30.30 Aligned_cols=22 Identities=9% Similarity=0.125 Sum_probs=14.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC
Q 038395 251 MVNLLSRAGQVEEAYKLVMDMK 272 (480)
Q Consensus 251 li~~~~~~g~~~~A~~~~~~m~ 272 (480)
+...|.+.+++++|+.+++.+|
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHCCHHHHHHHHhcCC
Confidence 4556667777777777777764
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=80.70 E-value=23 Score=29.35 Aligned_cols=187 Identities=12% Similarity=0.076 Sum_probs=120.4
Q ss_pred CHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 038395 56 EVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135 (480)
Q Consensus 56 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 135 (480)
+.+....+.+.+..+|...-...+..+.+.|.. ++...+.++.. .+|...-...+.++...++.+....+.. +.+
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~ 91 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIK-ALK 91 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHH-HTT
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHH-HHc
Confidence 333444555566677777777777778887774 34444445544 3577777777888888876544333333 222
Q ss_pred hCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038395 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215 (480)
Q Consensus 136 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 215 (480)
.++..+-...+.++.+.|+.+....+.+.+.+++...-...+.++.+.|..+ +...+..+.. .++...-...
T Consensus 92 ----~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a 163 (211)
T 3ltm_A 92 ----DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSA 163 (211)
T ss_dssp ----CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHH
Confidence 4677777888888888888766666666667788777777788888887754 5555555553 4566666777
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCC
Q 038395 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260 (480)
Q Consensus 216 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 260 (480)
+.++.+.+. +++...+..+.++ ++..+-...+.++.+.+.
T Consensus 164 ~~aL~~~~~-~~~~~~L~~~l~d----~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 164 ADALGEIGG-ERVRAAMEKLAET----GTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHHCS-HHHHHHHHHHHHH----CCHHHHHHHHHHHHC---
T ss_pred HHHHHHhCc-hhHHHHHHHHHhC----CCHHHHHHHHHHHHhcCC
Confidence 778888776 4566666666643 555555566666655443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=80.57 E-value=32 Score=30.95 Aligned_cols=169 Identities=5% Similarity=0.013 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHH
Q 038395 43 SLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVL----FRRMLAEKVEPNEVTAVAVLSACG 118 (480)
Q Consensus 43 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~pd~~t~~~ll~~~~ 118 (480)
.|.++..-|.+.+++++|++++..- ...+.+.|+...|-++ .+-..+.++++|......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4566777788888888888875432 2335566776665554 445556688888888888887776
Q ss_pred ccCCh-----HHHHHHHHHHHHhCCC--CCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhc---C
Q 038395 119 QIGAL-----ESGRWIHSYIENSRNI--KVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH---G 188 (480)
Q Consensus 119 ~~~~~-----~~a~~~~~~~~~~~~~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~---g 188 (480)
....- +-.........+. |- .-++.....+...|.+.|++.+|+.-|-.-...|...+..|+.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKF-SEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHT-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 54321 2223333333333 22 237788889999999999999999888733323455555555444433 4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhh
Q 038395 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238 (480)
Q Consensus 189 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 238 (480)
...++ |...-.+++. |.-.+++..|..+|+...+.
T Consensus 183 ~~~e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 183 EDSTV--------------AEFFSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHHH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred CcchH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 33332 2222233343 44568888888888876643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 480 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (90), Expect = 7e-04
Identities = 24/207 (11%), Positives = 59/207 (28%), Gaps = 10/207 (4%)
Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV---NDKDVVVWNSMIVGY 184
Y++ + L +++ G + A F++ + + + ++
Sbjct: 154 AKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVL 213
Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
A+ + + + + L GL++ + ++P
Sbjct: 214 KEARIFDRAVAAYLRALSLSPNHAVV-HGNLACVYYEQGLIDLAIDTYRRA---IELQPH 269
Query: 245 -VEHYGCMVNLLSRAGQVEEAYKLV--MDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
+ Y + N L G V EA + L R GNI ++
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYR 329
Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWD 328
+ + + L+++ G
Sbjct: 330 KALEVFPEFAAAHSNLASVLQQQGKLQ 356
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 480 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.87 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.85 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.57 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.55 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.19 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.12 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.12 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.03 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.01 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.01 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.0 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.98 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.89 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.83 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.53 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.53 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.51 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.49 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.43 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.43 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.39 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.36 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.34 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.3 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.26 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.25 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.14 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.13 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.07 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.05 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.01 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.98 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.93 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.88 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.88 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.84 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.83 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.81 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.78 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.75 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.73 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.59 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.58 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.45 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.44 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.36 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.3 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.23 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.12 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.09 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.08 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.74 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.62 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.61 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.39 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.22 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.57 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.4 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.53 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 91.88 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.36 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.42 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.06 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=4.8e-19 Score=168.19 Aligned_cols=318 Identities=12% Similarity=0.041 Sum_probs=257.4
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCChH
Q 038395 16 LVDLYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQHGLAN 89 (480)
Q Consensus 16 ll~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~ 89 (480)
+...+.+.|++++|.+.|+++.+ | +..+|..+...|.+.|++++|...|++..+ | +..+|..+...|.+.|+++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence 45667789999999999998753 4 567899999999999999999999998764 4 5678999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHH----------------------------------HHHHHccCChHHHHHHHHHHHH
Q 038395 90 EALVLFRRMLAEKVEPNEVTAVAV----------------------------------LSACGQIGALESGRWIHSYIEN 135 (480)
Q Consensus 90 ~A~~~~~~m~~~g~~pd~~t~~~l----------------------------------l~~~~~~~~~~~a~~~~~~~~~ 135 (480)
+|++.+........ .+....... .......+....+...+.....
T Consensus 85 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 85 EAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhc
Confidence 99999998877532 222222222 2222233444445555555544
Q ss_pred hCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 038395 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF 212 (480)
Q Consensus 136 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 212 (480)
. .+.+...+..+...+...|++++|...+++..+ .+..+|..+...+...|++++|+..|++....+ ..+...+
T Consensus 164 ~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 240 (388)
T d1w3ba_ 164 T--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp H--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred c--CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHH
Confidence 2 344567778888999999999999999987653 467789999999999999999999999988764 3456777
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHh
Q 038395 213 IGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM--KIEPDSVLWGTLLGACRL 289 (480)
Q Consensus 213 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~a~~~ 289 (480)
..+...+.+.|++++|...|+.+.+. .|+ ...+..+...|...|++++|.+.++.. ..+.+...+..+...+..
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH
Confidence 88888999999999999999998843 444 678888999999999999999999887 233567888999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 290 HGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
.|++++|...++++++..|+++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999988754
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.9e-18 Score=163.97 Aligned_cols=313 Identities=12% Similarity=0.086 Sum_probs=259.3
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---C----------
Q 038395 8 KDLYVSTSLVDLYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEEK---D---------- 71 (480)
Q Consensus 8 ~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~---------- 71 (480)
-++.++..+...|.+.|++++|...|++..+ | +..+|..+...|.+.|++++|...|+...+. +
T Consensus 31 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 110 (388)
T d1w3ba_ 31 DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAA 110 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccccccccccccccccccccccc
Confidence 3577889999999999999999999998753 4 5678999999999999999999999876531 1
Q ss_pred ------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHH
Q 038395 72 ------------------------VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGR 127 (480)
Q Consensus 72 ------------------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~ 127 (480)
...+..........+....+...+.+..... +-+...+..+...+...++++.|.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 189 (388)
T d1w3ba_ 111 LVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAI 189 (388)
T ss_dssp HHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHH
Confidence 1122333344445556666666666665542 335667788888899999999999
Q ss_pred HHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038395 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204 (480)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 204 (480)
..+....+. .+.+...+..+...|...|++++|...|++... .+...|..+...+.+.|++++|+..|++..+..
T Consensus 190 ~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 267 (388)
T d1w3ba_ 190 HHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267 (388)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHh--CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999875 355677889999999999999999999987654 467788889999999999999999999998753
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHH
Q 038395 205 LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGT 282 (480)
Q Consensus 205 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ 282 (480)
+-+..++..+..++...|+.++|.+.++..... .+.+...+..+...|.+.|++++|.+.|++. ...|+ ..+|..
T Consensus 268 -p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 344 (388)
T d1w3ba_ 268 -PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 344 (388)
T ss_dssp -SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 224678888999999999999999999998853 3455778889999999999999999999987 66675 778899
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCC
Q 038395 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGN 326 (480)
Q Consensus 283 li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 326 (480)
+..++...|++++|...++++++++|+++.+|..|+.+|.+.||
T Consensus 345 la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 345 LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999998876
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=2.1e-13 Score=126.04 Aligned_cols=241 Identities=10% Similarity=-0.053 Sum_probs=170.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhC
Q 038395 77 VMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156 (480)
Q Consensus 77 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 156 (480)
.....+.+.|++++|++.|++.++.. +-+..+|..+..++...|+++.|...+....+. .+.+...+..+...|...
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--cccccccccccccccccc
Confidence 35556778888888888888888752 225667778888888888888888888887764 344566777777778888
Q ss_pred CCHHHHHHHHHhcCCC--Ch-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 038395 157 GSLKDARLVFDRVNDK--DV-VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN 233 (480)
Q Consensus 157 g~~~~A~~~f~~m~~~--~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 233 (480)
|++++|.+.++..... +. ..+........ ..+.......+..+...+...++...+.
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhccchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 8888887777765421 11 00000000000 0000011111222334456677788887
Q ss_pred HhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 038395 234 TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311 (480)
Q Consensus 234 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~ 311 (480)
...+...-.++...+..+...+...|++++|...+++. ...| +..+|..+...+...|++++|.+.++++++..|.++
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 240 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 240 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccH
Confidence 77644222344567788888999999999999999887 3345 478899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 312 GTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
.++..++.+|.+.|++++|.+.|++..+.
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999988663
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=7.6e-13 Score=122.14 Aligned_cols=265 Identities=14% Similarity=0.054 Sum_probs=193.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 038395 45 TTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121 (480)
Q Consensus 45 ~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~ 121 (480)
-.....+.+.|++++|+..|+++.+ | +..+|..+..+|...|++++|+..|.+..+.. +-+...+..+...+...|
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 3456678899999999999999864 4 57799999999999999999999999998753 235678888889999999
Q ss_pred ChHHHHHHHHHHHHhCCCCCchhH-HHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038395 122 ALESGRWIHSYIENSRNIKVNVQV-GTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM 200 (480)
Q Consensus 122 ~~~~a~~~~~~~~~~~~~~~~~~~-~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 200 (480)
++++|.+.+...... .|+... ......... ..+.......+..+...+...+|.+.|.+.
T Consensus 102 ~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 102 LQRQACEILRDWLRY---TPAYAHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp CHHHHHHHHHHHHHT---STTTGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHh---ccchHHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 999999999998864 232111 100000000 001111111222334456677888888887
Q ss_pred HHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-C
Q 038395 201 CRIR-LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-D 276 (480)
Q Consensus 201 ~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~ 276 (480)
.... -.++...+..+...+...|++++|...|+..... .|+ ...|..+...|.+.|++++|.+.|++. ...| +
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 239 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHhhcc
Confidence 6643 2345667778888899999999999999998753 344 677888899999999999999999887 4455 4
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch-----------hHHHHHHHHHHcCChhHHHH
Q 038395 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG-----------TYVLLSNIYAAIGNWDGVAR 332 (480)
Q Consensus 277 ~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~a~~ 332 (480)
..+|..+..+|...|++++|...|++++++.|.+.. .+..+-.++...|+.+.+..
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 778999999999999999999999999998776543 33445666666677665543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=8e-09 Score=95.13 Aligned_cols=261 Identities=14% Similarity=0.018 Sum_probs=169.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHhC---CC-CCchhHHHHHH
Q 038395 79 IDGYAQHGLANEALVLFRRMLAEKVEPN----EVTAVAVLSACGQIGALESGRWIHSYIENSR---NI-KVNVQVGTALI 150 (480)
Q Consensus 79 i~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~~li 150 (480)
...+...|++++|+++|++.++.....+ ...+..+..++...|++++|...+....+.. +. ......+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3445667777777777777666421111 1245555666677777777777777665420 11 11123445566
Q ss_pred HHHHhCCCHHHHHHHHHhcCC-------C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCCHHHHHHH
Q 038395 151 NMYSKCGSLKDARLVFDRVND-------K----DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL----KPSDITFIGL 215 (480)
Q Consensus 151 ~~y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~t~~~l 215 (480)
..|...|++..|...+..... + ....+..+...+...|+++.+...+........ .....++...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 677777887777777665431 1 123455566777888888888888887765322 2223455555
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhcCCcCC-----ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-----CHhHHHHHH
Q 038395 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPK-----VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-----DSVLWGTLL 284 (480)
Q Consensus 216 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-----~~~~~~~li 284 (480)
...+...+....+...+........-..+ ...+..+...+...|++++|...++.. ...| ....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 66677788888888877766543221111 223555667788899999999998887 2222 234566678
Q ss_pred HHHHhcCChhHHHHHHHHHHHc------CCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 038395 285 GACRLHGNIALGEKIAEYLISQ------NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 285 ~a~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
.++...|+++.|...+++++.. .|....++..+..+|...|++++|.+.+++..+
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999988752 233455788899999999999999999987654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.12 E-value=8.4e-09 Score=93.84 Aligned_cols=185 Identities=11% Similarity=0.064 Sum_probs=123.7
Q ss_pred ChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C-C-hHHHHHHHHHHHhcCChHHHHHHH
Q 038395 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND--K-D-VVVWNSMIVGYAMHGFGKDALQLF 197 (480)
Q Consensus 122 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~-~~~~~~li~~~~~~g~~~~A~~l~ 197 (480)
..+++..+++...+. ..+.+...+...+..+.+.|+++.|..+|+++.+ + + ...|...+....+.|+.++|.++|
T Consensus 79 ~~~~a~~i~~ral~~-~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 79 FSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred chHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 346677777777764 3455566777777778888888888888877643 1 2 346777787777888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHH-HHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC----C
Q 038395 198 NEMCRIRLKPSDITFIGLLS-ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM----K 272 (480)
Q Consensus 198 ~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~ 272 (480)
.++.+.+.. +...|..... -+...|+.+.|..+|+.+.+.. +.+...|...++.+.+.|+++.|..+|++. +
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 887765432 2223322222 2344577788888888777532 334566777777777788888888877775 3
Q ss_pred CCCC--HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038395 273 IEPD--SVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310 (480)
Q Consensus 273 ~~p~--~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~ 310 (480)
..|+ ...|...+.--..+|+.+.+..+.+++.+.-|..
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 3332 3467777777777788888777777777766644
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=2.3e-08 Score=91.96 Aligned_cols=283 Identities=8% Similarity=-0.017 Sum_probs=159.7
Q ss_pred HHHhcCCHHHHHHHHhhcCC--CC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHH
Q 038395 50 CYAKQGEVAAARVLFDDMEE--KD------VVCWNVMIDGYAQHGLANEALVLFRRMLAEKV-EPN----EVTAVAVLSA 116 (480)
Q Consensus 50 ~~~~~g~~~~A~~~f~~~~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~t~~~ll~~ 116 (480)
.+...|++++|++.|++..+ |+ ...++.+...|...|++++|++.|++..+... .++ ..++..+...
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 100 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 34455555555555554321 11 22455555566666666666666665543210 011 1233344445
Q ss_pred HHccCChHHHHHHHHHHHHh---CCCCC---chhHHHHHHHHHHhCCCHHHHHHHHHhcCC--------CChHHHHHHHH
Q 038395 117 CGQIGALESGRWIHSYIENS---RNIKV---NVQVGTALINMYSKCGSLKDARLVFDRVND--------KDVVVWNSMIV 182 (480)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~---~~~~~---~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--------~~~~~~~~li~ 182 (480)
+...+++..+...+...... .+... ....+..+...|...|+++.+...+..... ....++..+..
T Consensus 101 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (366)
T d1hz4a_ 101 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 55666666666655554431 01111 122444556667777777777776665432 12334555556
Q ss_pred HHHhcCChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC--CccHHHHHHHH
Q 038395 183 GYAMHGFGKDALQLFNEMCRI----RLKPS--DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP--KVEHYGCMVNL 254 (480)
Q Consensus 183 ~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~ 254 (480)
.+...++..++...+.+.... +..+. ...+..+...+...|+.++|...+........-.+ ....+..+...
T Consensus 181 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~ 260 (366)
T d1hz4a_ 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 260 (366)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 667777777777777665431 11111 12344555667778888888888877663211111 12334556778
Q ss_pred HHHcCCHHHHHHHHHhC-------CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--C-------chhHHHH
Q 038395 255 LSRAGQVEEAYKLVMDM-------KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLA--N-------SGTYVLL 317 (480)
Q Consensus 255 ~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~--~-------~~~~~~l 317 (480)
|...|++++|...+++. +..|+ ..++..+...+...|++++|.+.+++++++.+. . ......+
T Consensus 261 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~ 340 (366)
T d1hz4a_ 261 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQ 340 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHH
Confidence 88888888888887765 33343 456777788888999999999999888775332 1 1123345
Q ss_pred HHHHHHcCChhHHHH
Q 038395 318 SNIYAAIGNWDGVAR 332 (480)
Q Consensus 318 ~~~~~~~g~~~~a~~ 332 (480)
+..+...++.+++.+
T Consensus 341 ~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 341 LRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHTTCSCHHHH
T ss_pred HHHHHhcCCChHHHH
Confidence 555666677766654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.03 E-value=2.5e-08 Score=90.62 Aligned_cols=182 Identities=10% Similarity=0.067 Sum_probs=143.4
Q ss_pred CCHHHHHHHHHhcCC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038395 157 GSLKDARLVFDRVND----KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232 (480)
Q Consensus 157 g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 232 (480)
+..++|..+|++..+ .+...|...+..+.+.|+.++|..+|+++...........|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 345778888887543 4667899999999999999999999999987543333457889999999999999999999
Q ss_pred HHhhhhcCCcCCccHHHHHHHH-HHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 038395 233 NTMKDEYAIEPKVEHYGCMVNL-LSRAGQVEEAYKLVMDM-KIE-PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309 (480)
Q Consensus 233 ~~m~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~ 309 (480)
..+.+.. +.+...|...... +...|+.+.|..+|+.+ ... .+...|...+..+...|+++.|..+|+++++..|.
T Consensus 158 ~~al~~~--~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKAREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTST--TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHhC--CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 9988531 2334444444433 33468999999999988 222 35789999999999999999999999999997765
Q ss_pred Cc----hhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 310 NS----GTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 310 ~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
++ ..|...+..-...|+.+.+.++.+++.+.
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 43 36777777778889999999999988764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.01 E-value=2.4e-09 Score=98.78 Aligned_cols=259 Identities=8% Similarity=-0.085 Sum_probs=182.6
Q ss_pred CCHHHHHHHHhhcCC--CC-HHHHHHHHHH----------HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 038395 55 GEVAAARVLFDDMEE--KD-VVCWNVMIDG----------YAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121 (480)
Q Consensus 55 g~~~~A~~~f~~~~~--~~-~~~~~~li~~----------~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~ 121 (480)
...++|+.++++..+ |+ ...|+..-.. +...|++++|+.+|+...+.. +-+...+..+..++...+
T Consensus 43 ~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (334)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred cccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhc
Confidence 334777777777653 43 3345443322 333455788999998888752 335566766666666655
Q ss_pred --ChHHHHHHHHHHHHhCCCCCchhHHH-HHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHH
Q 038395 122 --ALESGRWIHSYIENSRNIKVNVQVGT-ALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQ 195 (480)
Q Consensus 122 --~~~~a~~~~~~~~~~~~~~~~~~~~~-~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 195 (480)
+++++...+..+.+. .+++...+. .....+...|.+++|...++.+.. .+..+|+.+...+.+.|++++|..
T Consensus 122 ~~~~~~a~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 122 EPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp SCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhh--CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHH
Confidence 478888898888875 334455544 445677788999999999998876 367889999999999999888776
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 038395 196 LFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIE 274 (480)
Q Consensus 196 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 274 (480)
.++..... .|+. ..+...+...+..+++...+...... -+++...+..+...+...|+.++|...+.+. ...
T Consensus 200 ~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 272 (334)
T d1dcea1 200 QGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLG--RAEPLFRCELSVEKSTVLQSELESCKELQELEPEN 272 (334)
T ss_dssp CCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHS--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHh--CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 66544332 2222 12233345556667777777776642 2445666677778888889999999999887 555
Q ss_pred CC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 038395 275 PD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAA 323 (480)
Q Consensus 275 p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (480)
|+ ..+|..+..++...|+.++|.+.++++++++|.+...|..|...+.-
T Consensus 273 p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 273 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 64 67788888999999999999999999999999888777777666553
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=2.6e-08 Score=87.69 Aligned_cols=200 Identities=12% Similarity=-0.063 Sum_probs=112.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHH
Q 038395 109 TAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYA 185 (480)
Q Consensus 109 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~ 185 (480)
++..+..++.+.|++++|...|+...+. .+.++.+++.+..+|.+.|++++|.+.|+++.+ .+..+|..+...|.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhcc--CCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHH
Confidence 4445555666666666666666666653 234556666666677777777777777766543 24556666777777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCC----H
Q 038395 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ----V 261 (480)
Q Consensus 186 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~----~ 261 (480)
..|++++|++.|++..+... .+......+..++.+.+..+....+...... ..++...++ ++..+..... .
T Consensus 117 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWN-IVEFYLGNISEQTLM 191 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHH-HHHHHTTSSCHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhh-HHHHHHHHHHHHHHH
Confidence 77777777777777766431 2333333333334444444444444444332 122222222 2222222211 1
Q ss_pred HHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHH
Q 038395 262 EEAYKLVMDM-KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV 315 (480)
Q Consensus 262 ~~A~~~~~~m-~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 315 (480)
+.+...+... ...|+ ..+|..+...+...|++++|...+++++..+|++...|.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 2222211111 11222 346777888889999999999999999999998765544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=5.6e-08 Score=88.42 Aligned_cols=159 Identities=9% Similarity=-0.010 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccC-ChHHHHHHHHHHHHhCCCCCchhHHHHHH
Q 038395 73 VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP-NEVTAVAVLSACGQIG-ALESGRWIHSYIENSRNIKVNVQVGTALI 150 (480)
Q Consensus 73 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li 150 (480)
..|+-+...+.+.+.+++|+++++++++. .| +...|+....++...+ ++++|...++.+.+. .+-+..+|+.+.
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~~a~~~~~ 119 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHhhhhHHHHHh
Confidence 35566666666777777777777777764 44 3445566666666554 467777777776653 344566666666
Q ss_pred HHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC---
Q 038395 151 NMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL--- 224 (480)
Q Consensus 151 ~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~--- 224 (480)
..+.+.|++++|++.|+++.+ .+..+|+.+...+.+.|++++|++.|+++.+.... +...|+.+...+.+.+.
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccch
Confidence 677777777777777766653 35666777777777777777777777776664211 33444444333333322
Q ss_pred ---HHHHHHHHHHhh
Q 038395 225 ---VNEGRRFFNTMK 236 (480)
Q Consensus 225 ---~~~a~~~~~~m~ 236 (480)
+++|...+....
T Consensus 199 ~~~~~~ai~~~~~al 213 (315)
T d2h6fa1 199 RAVLEREVQYTLEMI 213 (315)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHH
Confidence 345555555544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=3.5e-08 Score=89.86 Aligned_cols=210 Identities=11% Similarity=0.086 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCC-CHHHHHHHHHhcCC---CChHHHHHHHHH
Q 038395 108 VTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG-SLKDARLVFDRVND---KDVVVWNSMIVG 183 (480)
Q Consensus 108 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~f~~m~~---~~~~~~~~li~~ 183 (480)
..++.+...+.+.+..++|.+.++.+++. .|.+...|+....++...| ++++|...+++..+ .+..+|+.+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Confidence 35666666778889999999999999985 4556778898898988877 59999999988753 578899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCC--
Q 038395 184 YAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQ-- 260 (480)
Q Consensus 184 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~-- 260 (480)
+.+.|++++|++.|+++.+.. +-+...|..+...+...|++++|.+.++.+.+. .| +...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---CCccHHHHHHHHHHHHHccccc
Confidence 999999999999999999853 235788999999999999999999999999853 45 46677777777776665
Q ss_pred ----HHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--chhHHHHHHHHHHc
Q 038395 261 ----VEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN--SGTYVLLSNIYAAI 324 (480)
Q Consensus 261 ----~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 324 (480)
+++|.+.+.+. ...| +...|..+...+. ....+++...++.+.+..|.. +..+..++..|...
T Consensus 198 ~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~ 268 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM 268 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHH
Confidence 57888888776 4455 5777877766554 445688889999999988764 33455677777543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.89 E-value=1.6e-08 Score=89.14 Aligned_cols=213 Identities=14% Similarity=0.023 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHhCCCCC--chhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHH
Q 038395 124 ESGRWIHSYIENSRNIKV--NVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFN 198 (480)
Q Consensus 124 ~~a~~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 198 (480)
+.+..-+++........+ ...++..+...|.+.|++++|...|++..+ .+..+|+.+..+|.+.|++++|++.|+
T Consensus 16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 95 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 95 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhh
Confidence 444445555554312221 244677788899999999999999998764 578899999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 038395 199 EMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD 276 (480)
Q Consensus 199 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 276 (480)
+..+... -+..++..+..++...|+.++|...|+...+. .|+ ......+...+.+.+..+.+..+.... ...++
T Consensus 96 ~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (259)
T d1xnfa_ 96 SVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 171 (259)
T ss_dssp HHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHh-hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchh
Confidence 9998532 24567888888999999999999999998854 343 333334444455556555554444443 11222
Q ss_pred HhHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 277 SVLWGTLLGACRL----HGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 277 ~~~~~~li~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
...++. +..+.. .+..+.+...+.......|....+|..+...|...|++++|.+.|++....+
T Consensus 172 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 172 QWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp STHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 222222 222211 1223333333333334445555678889999999999999999999987654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.83 E-value=6.6e-09 Score=95.67 Aligned_cols=255 Identities=9% Similarity=-0.072 Sum_probs=184.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHH---HHHHHH-------ccCChHHHHHHHHHHHHhCCCCCch
Q 038395 75 WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVT-AVA---VLSACG-------QIGALESGRWIHSYIENSRNIKVNV 143 (480)
Q Consensus 75 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t-~~~---ll~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~ 143 (480)
++.++......+..++|++++++.++. .|+..+ |+. ++.... ..+.++++..+++.+.+. .+.+.
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~--~pk~~ 107 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSY 107 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh--CCCcH
Confidence 344444444445568999999999874 576543 332 222222 334578899999998874 56677
Q ss_pred hHHHHHHHHHHhCC--CHHHHHHHHHhcCC---CChHHHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038395 144 QVGTALINMYSKCG--SLKDARLVFDRVND---KDVVVWNSM-IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217 (480)
Q Consensus 144 ~~~~~li~~y~~~g--~~~~A~~~f~~m~~---~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 217 (480)
..+..+...+...+ ++++|...++++.. ++...|... ...+...+.+++|+..+++...... -+...|..+..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~ 186 (334)
T d1dcea1 108 GTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSC 186 (334)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 78888877777766 48899999988753 456666544 4677778999999999999887643 25677888888
Q ss_pred HHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCChhH
Q 038395 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM--KIEPDSVLWGTLLGACRLHGNIAL 295 (480)
Q Consensus 218 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~a~~~~~~~~~ 295 (480)
++...|+.++|...+....+. .|+ ...+...+...+..+++...+... ...++...+..+...+...++.+.
T Consensus 187 ~~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 260 (334)
T d1dcea1 187 LLPQLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELE 260 (334)
T ss_dssp HHHHHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHH
Confidence 888888888776655554422 121 122334455667777777777665 223445667777788888899999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 296 GEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 296 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
|...+.+..+.+|.+..++..++.+|...|++++|.+.+++..+.
T Consensus 261 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 261 SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999899999999999999999999999998765
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=3.5e-06 Score=70.08 Aligned_cols=84 Identities=15% Similarity=-0.004 Sum_probs=50.3
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChHHHHH
Q 038395 17 VDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE---KDVVCWNVMIDGYAQHGLANEALV 93 (480)
Q Consensus 17 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 93 (480)
...+...|+++.|++.|+++..++..+|..+...|.+.|++++|++.|++..+ .+...|+.+..+|.+.|++++|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~ 91 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK 91 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHH
Confidence 33444556666666666666556666666666666666666666666666543 244556666666666666666666
Q ss_pred HHHHHHH
Q 038395 94 LFRRMLA 100 (480)
Q Consensus 94 ~~~~m~~ 100 (480)
.|++...
T Consensus 92 ~~~kAl~ 98 (192)
T d1hh8a_ 92 DLKEALI 98 (192)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=2.6e-06 Score=70.87 Aligned_cols=139 Identities=8% Similarity=-0.094 Sum_probs=98.6
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 038395 150 INMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR 229 (480)
Q Consensus 150 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 229 (480)
...+...|+++.|.+.|.++..++..+|..+...|...|++++|++.|++..+.. +-+...|..+..++.+.|+.++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 4567788999999999999888888888889999999999999999999988754 224667888888888999999998
Q ss_pred HHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038395 230 RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK--IEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQ 306 (480)
Q Consensus 230 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~ 306 (480)
..|+..... .+++... . +..++ .+++ ..++..+..++...|++++|.+.++.+++.
T Consensus 91 ~~~~kAl~~--~~~n~~~------~-------------~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 91 KDLKEALIQ--LRGNQLI------D-------------YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHT--TTTCSEE------E-------------CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHh--CccCchH------H-------------HHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 888887632 1122100 0 00001 1111 234555666777888888888888888877
Q ss_pred CCCC
Q 038395 307 NLAN 310 (480)
Q Consensus 307 ~~~~ 310 (480)
.|..
T Consensus 150 ~~~~ 153 (192)
T d1hh8a_ 150 KSEP 153 (192)
T ss_dssp CCSG
T ss_pred CCCc
Confidence 7754
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.51 E-value=8.2e-07 Score=79.47 Aligned_cols=192 Identities=9% Similarity=-0.047 Sum_probs=122.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCCHHH
Q 038395 146 GTALINMYSKCGSLKDARLVFDRVND-----KD----VVVWNSMIVGYAMHGFGKDALQLFNEMCRI----RL-KPSDIT 211 (480)
Q Consensus 146 ~~~li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~~t 211 (480)
|....+.|..+|++++|.+.|.+..+ .+ ..+|+.+..+|.+.|++++|++.+++..+. |. .....+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 33445567778888888777776543 11 346788888888888888888888876542 11 111344
Q ss_pred HHHHHHHHH-ccCCHHHHHHHHHHhhhhc---CCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-------H-
Q 038395 212 FIGLLSACA-HAGLVNEGRRFFNTMKDEY---AIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-------S- 277 (480)
Q Consensus 212 ~~~ll~a~~-~~g~~~~a~~~~~~m~~~~---~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-------~- 277 (480)
+..+...|. ..|++++|.+.+....+-. +..+. ..++..+...|...|++++|.+.|++. ...|+ .
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 555666664 4699999999988775321 11111 345677888999999999999999886 11111 1
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch-----hHHHHHHHHHH--cCChhHHHHHHHHH
Q 038395 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG-----TYVLLSNIYAA--IGNWDGVARVRTLM 337 (480)
Q Consensus 278 ~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~~--~g~~~~a~~~~~~m 337 (480)
..+...+..+...++++.|...+++..+..|.... ....|+.+|.. .+.+++|...|+.+
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 12344555667789999999999999988875322 33456666655 34577777776533
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.49 E-value=3.6e-07 Score=76.76 Aligned_cols=101 Identities=9% Similarity=-0.150 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHH
Q 038395 207 PSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGTLL 284 (480)
Q Consensus 207 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li 284 (480)
|+...+......+...|++++|...|...... -+.+...|..+..+|.+.|++++|...|++. .+.|+ ...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 44444555555555555555555555555432 0122444455555555555555555555554 33442 44455555
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCC
Q 038395 285 GACRLHGNIALGEKIAEYLISQNLA 309 (480)
Q Consensus 285 ~a~~~~~~~~~a~~~~~~~~~~~~~ 309 (480)
.++...|++++|...+++++++.|.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 5555555555555555555554443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.43 E-value=1.2e-05 Score=71.50 Aligned_cols=197 Identities=10% Similarity=-0.033 Sum_probs=103.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhC---C-CCCchhH
Q 038395 75 WNVMIDGYAQHGLANEALVLFRRMLAE----KVEPN-EVTAVAVLSACGQIGALESGRWIHSYIENSR---N-IKVNVQV 145 (480)
Q Consensus 75 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~-~~~~~~~ 145 (480)
|......|...|++++|.+.|.+.... +-+|+ ..+|..+..+|.+.|++++|...+....+.. + ......+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 333456677777788877777776542 11221 2466667777777777777777776655420 1 0111233
Q ss_pred HHHHHHHHHh-CCCHHHHHHHHHhcCC-----C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----H-
Q 038395 146 GTALINMYSK-CGSLKDARLVFDRVND-----K----DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS-----D- 209 (480)
Q Consensus 146 ~~~li~~y~~-~g~~~~A~~~f~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~- 209 (480)
+..+...|.. .|++++|.+.|++..+ . -..+|..+...|...|++++|++.|++......... .
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 4444555533 4777777777665432 1 123456666777777777777777777655321111 0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCc---cHHHHHHHHHHH--cCCHHHHHHHHHhC
Q 038395 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV---EHYGCMVNLLSR--AGQVEEAYKLVMDM 271 (480)
Q Consensus 210 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~---~~~~~li~~~~~--~g~~~~A~~~~~~m 271 (480)
..+...+..+...|+.+.|...++...+...--++. .....++.++-. .+.+++|...|+++
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 112233334555677777777777665321001111 122344444443 23466666666655
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=9e-07 Score=67.19 Aligned_cols=89 Identities=12% Similarity=0.131 Sum_probs=65.2
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhH
Q 038395 252 VNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDG 329 (480)
Q Consensus 252 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 329 (480)
...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..+.++++.+|.++..|..++.+|...|++++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence 44566677777777777776 3334 466777777777777888888888888877777777777777778888888888
Q ss_pred HHHHHHHHHhC
Q 038395 330 VARVRTLMKEK 340 (480)
Q Consensus 330 a~~~~~~m~~~ 340 (480)
|...+++..+.
T Consensus 90 A~~~~~~a~~~ 100 (117)
T d1elwa_ 90 AKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 88777777654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.39 E-value=7.5e-07 Score=67.06 Aligned_cols=88 Identities=10% Similarity=-0.076 Sum_probs=80.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCh
Q 038395 250 CMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW 327 (480)
Q Consensus 250 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 327 (480)
.+...+.+.|++++|...|++. ...| ++..|..+..++...|++++|+..++++++.+|.++.++..++..|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 4566788999999999999997 4456 5889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH
Q 038395 328 DGVARVRTLM 337 (480)
Q Consensus 328 ~~a~~~~~~m 337 (480)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=3e-06 Score=64.19 Aligned_cols=103 Identities=11% Similarity=0.076 Sum_probs=81.6
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCh
Q 038395 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNI 293 (480)
Q Consensus 216 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~ 293 (480)
...+...|++++|...|+...+. -+.+...|..+..+|.+.|++++|...+++. .+.| ++..|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 45667788888888888888743 1334667888888888889999998888887 3334 578888999999999999
Q ss_pred hHHHHHHHHHHHcCCCCchhHHHHHHH
Q 038395 294 ALGEKIAEYLISQNLANSGTYVLLSNI 320 (480)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~~~~l~~~ 320 (480)
++|...++++++..|.++..+..+.++
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999988777666554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.34 E-value=9.9e-07 Score=73.93 Aligned_cols=95 Identities=4% Similarity=-0.126 Sum_probs=57.8
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHH
Q 038395 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCM 251 (480)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 251 (480)
+..........|.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|...|+... .+.|+ ...|..+
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~~l 78 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHFFL 78 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHHHH
Confidence 34444455566666666666666666666542 2245556666666666666666666666665 33443 4556666
Q ss_pred HHHHHHcCCHHHHHHHHHhC
Q 038395 252 VNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 252 i~~~~~~g~~~~A~~~~~~m 271 (480)
..+|.+.|++++|...|++.
T Consensus 79 g~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 66666666666666666654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=6e-06 Score=66.26 Aligned_cols=115 Identities=8% Similarity=-0.014 Sum_probs=87.7
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCC
Q 038395 216 LSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGN 292 (480)
Q Consensus 216 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~ 292 (480)
...|.+.|++++|...|+...+. .| +...|..+...|...|++++|.+.|++. .+.| +...|..+..++...|+
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHhhhcccc---chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 44567888888888888888753 34 4667788888888889999998888887 4445 46789999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCchhHHHHHHHH--HHcCChhHHHHH
Q 038395 293 IALGEKIAEYLISQNLANSGTYVLLSNIY--AAIGNWDGVARV 333 (480)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~ 333 (480)
+++|...++++++..|.++..+..+..+. ...+.+++|...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999887776655443 333445555543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.26 E-value=0.0014 Score=58.59 Aligned_cols=279 Identities=11% Similarity=0.042 Sum_probs=156.9
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCC
Q 038395 8 KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGL 87 (480)
Q Consensus 8 ~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 87 (480)
||..--..+.+.|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..+|..+...+.+...
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~~~e 84 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKE 84 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTC
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHhCcH
Confidence 4555556677788889999999999987654 7778888889999999999887664 56688888988888876
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHH
Q 038395 88 ANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD 167 (480)
Q Consensus 88 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 167 (480)
..-| .+...+...+......++..|-..|.+++...+++.... .-..+...++-++..|++.+. ++-.+.+.
T Consensus 85 ~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~--~~~~~~~~~~~L~~lyak~~~-~kl~e~l~ 156 (336)
T d1b89a_ 85 FRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKP-QKMREHLE 156 (336)
T ss_dssp HHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--STTCCHHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred HHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHc--CCccchHHHHHHHHHHHHhCh-HHHHHHHH
Confidence 6543 223334455777778889999999999998888887763 235677788899999998754 44444444
Q ss_pred hcCCC-----------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 038395 168 RVNDK-----------DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 168 ~m~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 236 (480)
....+ ....|.-++-.|.+.|.+++|+.+.-+ ..|+..-....+..+.+..+.+...++.....
T Consensus 157 ~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~-----~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL 231 (336)
T d1b89a_ 157 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN-----HPTDAWKEGQFKDIITKVANVELYYRAIQFYL 231 (336)
T ss_dssp HHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH-----STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred hccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH-----cchhhhhHHHHHHHHHccCChHHHHHHHHHHH
Confidence 43221 112344555555555555555444322 12222222333444555555555555544444
Q ss_pred hhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHH
Q 038395 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVL 316 (480)
Q Consensus 237 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 316 (480)
.. .| ...+.|+......-+..++.+.++ +.+++......++...+.+ +.....+
T Consensus 232 ~~---~p--~~i~~lL~~v~~~~d~~r~V~~~~-------------------k~~~l~li~p~Le~v~~~n--~~~vn~a 285 (336)
T d1b89a_ 232 EF---KP--LLLNDLLMVLSPRLDHTRAVNYFS-------------------KVKQLPLVKPYLRSVQNHN--NKSVNES 285 (336)
T ss_dssp HH---CG--GGHHHHHHHHGGGCCHHHHHHHHH-------------------HTTCTTTTHHHHHHHHTTC--CHHHHHH
T ss_pred Hc---CH--HHHHHHHHHhccCCCHHHHHHHHH-------------------hcCCcHHHHHHHHHHHHcC--hHHHHHH
Confidence 21 22 233444444444444444444443 3444444444444443322 2346667
Q ss_pred HHHHHHHcCChhHHHH
Q 038395 317 LSNIYAAIGNWDGVAR 332 (480)
Q Consensus 317 l~~~~~~~g~~~~a~~ 332 (480)
|...|...++++.-.+
T Consensus 286 l~~lyie~~d~~~l~~ 301 (336)
T d1b89a_ 286 LNNLFITEEDYQALRT 301 (336)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHhCcchhHHHHH
Confidence 7777777777554333
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=4e-06 Score=67.38 Aligned_cols=91 Identities=15% Similarity=0.095 Sum_probs=82.4
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChh
Q 038395 251 MVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWD 328 (480)
Q Consensus 251 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 328 (480)
....|.+.|++++|...|++. .+.| +...|..+...+...|++++|...++++++.+|.+..+|..++.+|...|+++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 355688999999999999988 4445 58889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 038395 329 GVARVRTLMKEKG 341 (480)
Q Consensus 329 ~a~~~~~~m~~~~ 341 (480)
+|...+++..+..
T Consensus 96 eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 96 AALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcC
Confidence 9999999987653
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.14 E-value=0.00053 Score=59.41 Aligned_cols=229 Identities=12% Similarity=-0.038 Sum_probs=120.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCCCchhHH
Q 038395 71 DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ----IGALESGRWIHSYIENSRNIKVNVQVG 146 (480)
Q Consensus 71 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (480)
|+..+..|...+.+.+++++|++.|++..+.| |...+..|...+.. ..+...+...+....+. + +....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~-~---~~~a~ 73 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-N---YSNGC 73 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc-c---ccchh
Confidence 45566777777777888888888888877765 44445445555443 34566666666665543 2 22222
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hcc
Q 038395 147 TALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC----AHA 222 (480)
Q Consensus 147 ~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~----~~~ 222 (480)
..+...+..-. ....+.+.|...++.....|..+ ....+...+ ...
T Consensus 74 ~~l~~~~~~~~---------------------------~~~~~~~~a~~~~~~a~~~g~~~---a~~~l~~~~~~~~~~~ 123 (265)
T d1ouva_ 74 HLLGNLYYSGQ---------------------------GVSQNTNKALQYYSKACDLKYAE---GCASLGGIYHDGKVVT 123 (265)
T ss_dssp HHHHHHHHHTS---------------------------SSCCCHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHCSSSC
T ss_pred hcccccccccc---------------------------ccchhhHHHHHHHhhhhhhhhhh---HHHhhcccccCCCccc
Confidence 33333322210 01223344444444444433211 111111111 112
Q ss_pred CCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCChh
Q 038395 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR----AGQVEEAYKLVMDMKIEPDSVLWGTLLGACRL----HGNIA 294 (480)
Q Consensus 223 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~----~~~~~ 294 (480)
.....+...+..... ..+...+..|...|.. ..+...+..+++...-..+......|...+.. ..+++
T Consensus 124 ~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 124 RDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred chhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchh
Confidence 334444444444332 2333444445555543 33445555555554212345555555444444 45788
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHH----cCChhHHHHHHHHHHhCCC
Q 038395 295 LGEKIAEYLISQNLANSGTYVLLSNIYAA----IGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 295 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 342 (480)
.|...|++..+.+ ++.++..|..+|.+ ..+.++|.+.|++..+.|.
T Consensus 200 ~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 200 EALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 8888888887775 34567777777765 3478888888888877764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=2.7e-05 Score=63.10 Aligned_cols=134 Identities=10% Similarity=-0.010 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHH
Q 038395 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNL 254 (480)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 254 (480)
..+......+.+.|++++|+..|++....- |.. .+..+.-......+. ...|+.+..+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~------------~~~~~~~~~~~~~~~--------~~~~~nla~~ 71 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYE------------SSFSNEEAQKAQALR--------LASHLNLAMC 71 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTC------------CCCCSHHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhc------------cccchHHHhhhchhH--------HHHHHHHHHH
Confidence 345556667788888888888888776531 100 000000001111111 1246678888
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHH
Q 038395 255 LSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGV 330 (480)
Q Consensus 255 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 330 (480)
|.+.|++++|+..++.. .+.| ++..|..+..++...|+++.|...|+++++++|+++.+...+..+..+.+...+.
T Consensus 72 y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 72 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 4455 6888999999999999999999999999999999988888887777666555443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=2.1e-05 Score=59.69 Aligned_cols=102 Identities=11% Similarity=-0.068 Sum_probs=74.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCC---HHHHHHHHHhC-CCCCCH---hHHHHHHHH
Q 038395 214 GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ---VEEAYKLVMDM-KIEPDS---VLWGTLLGA 286 (480)
Q Consensus 214 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p~~---~~~~~li~a 286 (480)
.+++.+...+++++|.+.|+...+. -+.++.++..+..++.+.++ +++|..+++++ ...|+. .+|..|..+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 4666777778888888888887743 13345677777777776554 44688888876 434432 367788899
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCchhHHHH
Q 038395 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLL 317 (480)
Q Consensus 287 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 317 (480)
|...|++++|.+.++++++.+|++..+...+
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~ 112 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELE 112 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 9999999999999999999999887655444
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=7e-05 Score=60.52 Aligned_cols=64 Identities=5% Similarity=-0.148 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 278 ~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
.+|+.+..+|.+.|++++|+..++.+++.+|.++.++..++.+|...|++++|...|++..+..
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 4577788889999999999999999999999999999999999999999999999999987753
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=1.9e-05 Score=59.94 Aligned_cols=93 Identities=9% Similarity=-0.035 Sum_probs=77.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCC--chhHHHHHHH
Q 038395 248 YGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHG---NIALGEKIAEYLISQNLAN--SGTYVLLSNI 320 (480)
Q Consensus 248 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~ 320 (480)
...+++.+...+++++|.+.|++. ...| ++.++..+..++.+.+ +.++|..+++++++.+|.+ ..++..|+.+
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 356788888999999999999998 4444 5788888888887654 4567999999999888754 3478899999
Q ss_pred HHHcCChhHHHHHHHHHHhC
Q 038395 321 YAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 321 ~~~~g~~~~a~~~~~~m~~~ 340 (480)
|.+.|++++|.+.+++..+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 99999999999999999874
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.98 E-value=0.00011 Score=58.12 Aligned_cols=63 Identities=8% Similarity=-0.105 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 278 ~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
.+|..+..+|.+.|+++.|...++++++.+|.+..+|..++.+|...|++++|...|+...+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466778888888899999999999999999988889999999999999999999888887654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.93 E-value=0.00011 Score=59.19 Aligned_cols=92 Identities=9% Similarity=-0.069 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHc
Q 038395 247 HYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAI 324 (480)
Q Consensus 247 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 324 (480)
.|+.+..+|.+.|++++|+..++.. .+.| +...|..+..++...|++++|...++++++++|+++.+...+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4666778889999999999999887 3344 5888999999999999999999999999999999988888777776666
Q ss_pred CChh-HHHHHHHHHH
Q 038395 325 GNWD-GVARVRTLMK 338 (480)
Q Consensus 325 g~~~-~a~~~~~~m~ 338 (480)
+... ...+++..|-
T Consensus 146 ~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 146 KEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHH
Confidence 5543 3455555553
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.88 E-value=8.8e-05 Score=59.82 Aligned_cols=129 Identities=8% Similarity=-0.006 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHH
Q 038395 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNL 254 (480)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~ 254 (480)
.+......+.+.|++++|++.|++..+. +..........+.. .+.| ....|..+..+
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~----------~~~~~~~~~~~nla~~ 86 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGA----------KLQPVALSCVLNIGAC 86 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHG----------GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHH----------HhChhhHHHHHHHHHH
Confidence 3445566777888888888888776531 00000001111100 1112 34567778888
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCC
Q 038395 255 LSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGN 326 (480)
Q Consensus 255 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 326 (480)
|.+.|++++|+..+++. .+.| ++..|..+..++...|+++.|...|+++++++|++..+...+..++.+...
T Consensus 87 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~ 160 (169)
T d1ihga1 87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 160 (169)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999888 6666 478899999999999999999999999999999998877777766654433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.88 E-value=0.0059 Score=52.40 Aligned_cols=224 Identities=12% Similarity=-0.055 Sum_probs=127.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-CCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038395 40 SLVSLTTMLTCYAKQGEVAAARVLFDDMEE-KDVVCWNVMIDGYAQ----HGLANEALVLFRRMLAEKVEPNEVTAVAVL 114 (480)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 114 (480)
|+..+..|...+-+.+++++|++.|++..+ .|..++-.|...|.. ..++..|...+......+ +......+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence 456778888888899999999999999865 467777778877876 568899999998887765 333334443
Q ss_pred HHHHc----cCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHh----CCCHHHHHHHHHhcCC-CChHHHHHHHHHHH
Q 038395 115 SACGQ----IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK----CGSLKDARLVFDRVND-KDVVVWNSMIVGYA 185 (480)
Q Consensus 115 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~ 185 (480)
..+.. ..+.+.+...++...+. |... ....+...+.. ......|...+..... .+...+..|...|.
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~-g~~~---a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~ 153 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDL-KYAE---GCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYD 153 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT-TCHH---HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhh-hhhh---HHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhc
Confidence 33332 45778888888887765 4321 22223333332 2334455555544332 34555555555554
Q ss_pred h----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHH----
Q 038395 186 M----HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR---- 257 (480)
Q Consensus 186 ~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~---- 257 (480)
. ..+...+...++...+.| +.. ....|...|..
T Consensus 154 ~~~~~~~~~~~~~~~~~~a~~~g---~~~------------------------------------A~~~lg~~y~~g~~~ 194 (265)
T d1ouva_ 154 AGRGTPKDLKKALASYDKACDLK---DSP------------------------------------GCFNAGNMYHHGEGA 194 (265)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHH------------------------------------HHHHHHHHHHHTCSS
T ss_pred cCCCcccccccchhhhhcccccc---ccc------------------------------------cccchhhhcccCccc
Confidence 3 123333333333333322 122 22222222222
Q ss_pred cCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCC
Q 038395 258 AGQVEEAYKLVMDMKIEPDSVLWGTLLGACRL----HGNIALGEKIAEYLISQNLA 309 (480)
Q Consensus 258 ~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~----~~~~~~a~~~~~~~~~~~~~ 309 (480)
..++++|..+|++....-++..+..|...|.. ..+.++|.+.|+++.+.+..
T Consensus 195 ~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 195 TKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred ccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 34566666666665212244555555555543 33677777777777776643
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.84 E-value=6.6e-05 Score=61.13 Aligned_cols=118 Identities=14% Similarity=-0.016 Sum_probs=83.5
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhH
Q 038395 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIAL 295 (480)
Q Consensus 216 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~ 295 (480)
.......|++++|.+.|.....- .+....- .+....-......-++. .....+..+..++...|++++
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l---~rG~~l~-----~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~~~ 85 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALRE---WRGPVLD-----DLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRASA 85 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT---CCSSTTG-----GGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh---Ccccccc-----cCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCchH
Confidence 34677889999999998888743 2221100 00000000111111111 124567888999999999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh-----CCCccC
Q 038395 296 GEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE-----KGVQKE 345 (480)
Q Consensus 296 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~ 345 (480)
|...++++++.+|.+...|..++.+|...|++++|.+.|+++.+ .|+.|.
T Consensus 86 Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~ 140 (179)
T d2ff4a2 86 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 140 (179)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 99999999999999999999999999999999999999999843 577654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.83 E-value=0.00011 Score=58.10 Aligned_cols=126 Identities=9% Similarity=-0.144 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHH
Q 038395 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNL 254 (480)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 254 (480)
..+......+.+.|++.+|+..|++....- |... ...-......... ....+|+.+...
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~-----------~~~~~~~~~~~~~--------~~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTE-----------EWDDQILLDKKKN--------IEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCT-----------TCCCHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchh-----------hhhhHHHHHhhhh--------HHHHHHhhHHHH
Confidence 456667778888899999999888876521 1000 0000000000000 112366778889
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 038395 255 LSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIY 321 (480)
Q Consensus 255 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 321 (480)
|.+.|++++|++.+++. .+.| ++.+|..+..++...|+++.|...|+++++++|.++.+...+..+.
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999987 4455 6889999999999999999999999999999999987766554443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=4.1e-05 Score=58.64 Aligned_cols=91 Identities=12% Similarity=0.095 Sum_probs=74.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch-------hHHHHHH
Q 038395 249 GCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG-------TYVLLSN 319 (480)
Q Consensus 249 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~l~~ 319 (480)
-.+...|.+.|++++|.+.|++. .+.| +...|..+..+|...|+++.|...++++++.+|.+.. +|..+..
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 34567788899999999999887 3344 5788999999999999999999999999998876554 5556777
Q ss_pred HHHHcCChhHHHHHHHHHHh
Q 038395 320 IYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 320 ~~~~~g~~~~a~~~~~~m~~ 339 (480)
.+...+++++|.+.++....
T Consensus 88 ~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 88888999999999977653
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.78 E-value=9.7e-05 Score=54.93 Aligned_cols=86 Identities=12% Similarity=-0.076 Sum_probs=45.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCC
Q 038395 79 IDGYAQHGLANEALVLFRRMLAEKVEP-NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157 (480)
Q Consensus 79 i~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 157 (480)
...+.+.|++++|+..|++.... .| +...|..+..++.+.+++++|...++...+. .+.+..++..+...|...|
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHHCC
Confidence 34455555555555555555543 23 3445555555555555555555555555543 2334455555555555555
Q ss_pred CHHHHHHHHHh
Q 038395 158 SLKDARLVFDR 168 (480)
Q Consensus 158 ~~~~A~~~f~~ 168 (480)
++++|.+.|++
T Consensus 99 ~~~~A~~~l~~ 109 (112)
T d1hxia_ 99 NANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 55555555543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.75 E-value=0.0002 Score=57.59 Aligned_cols=65 Identities=5% Similarity=-0.131 Sum_probs=60.3
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 276 ~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
+...|..+..++.+.|++++|+..+.++++++|.++.+|..++.+|...|++++|.+.|+...+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 35677888889999999999999999999999999999999999999999999999999998874
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.73 E-value=0.00056 Score=54.79 Aligned_cols=63 Identities=6% Similarity=-0.065 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 278 ~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
.+|..+..++...|++++|+..++++++++|.+..+|..++.+|...|++++|...|++..+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456677888999999999999999999999999999999999999999999999999998764
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=1.5e-05 Score=76.90 Aligned_cols=112 Identities=7% Similarity=-0.096 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHH
Q 038395 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGTLLGA 286 (480)
Q Consensus 209 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~a 286 (480)
...+..+...+.+.|+.++|...+...... .| ...+..+.+.+...|++++|...|++. .+.|+ ...|+.|...
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAIL 195 (497)
T ss_dssp -----------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 344555555666667777766655544421 11 235566677777777777777777776 44454 5677777777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHc
Q 038395 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAI 324 (480)
Q Consensus 287 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 324 (480)
+...|+..+|...|.+.+...|+.+.++..|...|.+.
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 77777777777777777777777777777776666544
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.58 E-value=0.022 Score=50.46 Aligned_cols=244 Identities=13% Similarity=0.102 Sum_probs=136.2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038395 39 RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACG 118 (480)
Q Consensus 39 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~ 118 (480)
+|..--..+..-|.+.|.++.|..+|..+.. |.-++..|.+.++++.|.+++.+. -+..+|..+..+|.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHH
Confidence 5555556667777788999999999987653 666778888899999988887654 25668888888888
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCChHHHHH
Q 038395 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN---DKDVVVWNSMIVGYAMHGFGKDALQ 195 (480)
Q Consensus 119 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~ 195 (480)
+......+. +... ....++.....++..|-..|.+++...+++... ..+...++-++..|++.+ .++..+
T Consensus 81 ~~~e~~la~-----i~~~-~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e 153 (336)
T d1b89a_ 81 DGKEFRLAQ-----MCGL-HIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMRE 153 (336)
T ss_dssp HTTCHHHHH-----HTTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHH
T ss_pred hCcHHHHHH-----HHHH-HhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHH
Confidence 776654432 2222 333455555678888888888888888888653 346667788888888764 333333
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 038395 196 LFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275 (480)
Q Consensus 196 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 275 (480)
.++.. +..-| ...++..|...+.+ .-++-.|.+.|.+++|..++-.-+ +
T Consensus 154 ~l~~~---s~~y~---~~k~~~~c~~~~l~-----------------------~elv~Ly~~~~~~~~A~~~~i~~~--~ 202 (336)
T d1b89a_ 154 HLELF---WSRVN---IPKVLRAAEQAHLW-----------------------AELVFLYDKYEEYDNAIITMMNHP--T 202 (336)
T ss_dssp HHHHH---STTSC---HHHHHHHHHTTTCH-----------------------HHHHHHHHHTTCHHHHHHHHHHST--T
T ss_pred HHHhc---cccCC---HHHHHHHHHHcCCh-----------------------HHHHHHHHhcCCHHHHHHHHHHcc--h
Confidence 33322 11111 12233444444333 334555666666666665554432 2
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHH
Q 038395 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVR 334 (480)
Q Consensus 276 ~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 334 (480)
++.-....+..+.+..+.+..-++....++..| .....|+......-+..+..+.+
T Consensus 203 ~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p---~~i~~lL~~v~~~~d~~r~V~~~ 258 (336)
T d1b89a_ 203 DAWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYF 258 (336)
T ss_dssp TTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHH
T ss_pred hhhhHHHHHHHHHccCChHHHHHHHHHHHHcCH---HHHHHHHHHhccCCCHHHHHHHH
Confidence 333344455566666666666666665555443 23344444444444554444444
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.45 E-value=0.0012 Score=53.26 Aligned_cols=120 Identities=15% Similarity=0.140 Sum_probs=63.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhC
Q 038395 77 VMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156 (480)
Q Consensus 77 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 156 (480)
.........|++++|.+.|.+.+.. .+... +......+-+...-..+... ....+..+...+.+.
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~--------l~~~~~~~w~~~~r~~l~~~-----~~~a~~~la~~~~~~ 80 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALRE--WRGPV--------LDDLRDFQFVEPFATALVED-----KVLAHTAKAEAEIAC 80 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT--CCSST--------TGGGTTSTTHHHHHHHHHHH-----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh--Ccccc--------cccCcchHHHHHHHHHHHHH-----HHHHHHHHHHHHHHC
Confidence 3445667778888888888887764 11110 00000000011111111111 223455566666677
Q ss_pred CCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHH
Q 038395 157 GSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCR-----IRLKPSDIT 211 (480)
Q Consensus 157 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t 211 (480)
|++++|...++++.. .+...|..++.+|.+.|+..+|++.|+++.. .|+.|...+
T Consensus 81 g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 81 GRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 777777776666543 2556666677777777777777766666532 466665543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=0.00093 Score=50.67 Aligned_cols=92 Identities=9% Similarity=0.013 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-----ccHHHHHH
Q 038395 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-----VEHYGCMV 252 (480)
Q Consensus 178 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li 252 (480)
..+...|.+.|++++|+..|++..+.+ +.+...+..+..+|.+.|++++|...++.+.+...-.+. ..+|..+.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 344555556666666666666665542 123455555566666666666666666655421000011 11333344
Q ss_pred HHHHHcCCHHHHHHHHHh
Q 038395 253 NLLSRAGQVEEAYKLVMD 270 (480)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~ 270 (480)
..+...+++++|.+.|++
T Consensus 87 ~~~~~~~~~~~A~~~~~k 104 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNK 104 (128)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHH
Confidence 444455555555555544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.36 E-value=0.00035 Score=54.49 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=47.4
Q ss_pred HHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcC-----------ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCh
Q 038395 261 VEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHG-----------NIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW 327 (480)
Q Consensus 261 ~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 327 (480)
+++|...|++. .+.| +..+|..+..+|...| +++.|.+.|+++++.+|.+...+..|...
T Consensus 57 ~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~------- 129 (145)
T d1zu2a1 57 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT------- 129 (145)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------
Confidence 34555555554 3334 3555555555554443 36889999999999999987555555433
Q ss_pred hHHHHHHHHHHhCCC
Q 038395 328 DGVARVRTLMKEKGV 342 (480)
Q Consensus 328 ~~a~~~~~~m~~~~~ 342 (480)
..|.+++.+..+.|+
T Consensus 130 ~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 130 AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHhc
Confidence 466777777766664
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.30 E-value=7.9e-05 Score=71.60 Aligned_cols=112 Identities=8% Similarity=-0.098 Sum_probs=46.4
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 038395 142 NVQVGTALINMYSKCGSLKDARLVFDRVNDKD-VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP-SDITFIGLLSAC 219 (480)
Q Consensus 142 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~ 219 (480)
+...+..+...+.+.|+.+.|...+.....++ ..++..+...+...|++++|...|++..+. .| +..+|+.+...+
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILA 196 (497)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 34445555556666666666655554433322 134445555666666666666666666553 23 335566666666
Q ss_pred HccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHH
Q 038395 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR 257 (480)
Q Consensus 220 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 257 (480)
...|+..+|...|.+... --.|-...+..|...|.+
T Consensus 197 ~~~~~~~~A~~~y~ral~--~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIA--VKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHTTCHHHHHHHHHHHHS--SSBCCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHH
Confidence 666666666666665552 123444555555555443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.23 E-value=0.00088 Score=52.80 Aligned_cols=87 Identities=11% Similarity=-0.087 Sum_probs=61.2
Q ss_pred HHHHcCCHHHHHHHHHhC----CCCCC----------HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-------C---
Q 038395 254 LLSRAGQVEEAYKLVMDM----KIEPD----------SVLWGTLLGACRLHGNIALGEKIAEYLISQNL-------A--- 309 (480)
Q Consensus 254 ~~~~~g~~~~A~~~~~~m----~~~p~----------~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~-------~--- 309 (480)
.+.+.|++++|++.|++. +..|+ ...|+.+..++...|++++|...+++.++..| .
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 344556666666665554 11121 35677888888889999999888888887432 1
Q ss_pred -CchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 310 -NSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 310 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
...++..+..+|...|++++|.+.|++..+.
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1225677899999999999999999987653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.12 E-value=0.0014 Score=46.55 Aligned_cols=70 Identities=9% Similarity=-0.047 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC----C----CCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHH
Q 038395 249 GCMVNLLSRAGQVEEAYKLVMDM----K----IEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLS 318 (480)
Q Consensus 249 ~~li~~~~~~g~~~~A~~~~~~m----~----~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 318 (480)
-.+...+.+.|++++|...|++. + ..++ ..++..|..++.+.|++++|...++++++++|+++.++..+.
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 34556667777777777777655 1 1222 567888999999999999999999999999999887776653
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.09 E-value=0.00031 Score=54.84 Aligned_cols=85 Identities=13% Similarity=0.019 Sum_probs=60.0
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHh----------cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 038395 256 SRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRL----------HGNIALGEKIAEYLISQNLANSGTYVLLSNIYAA 323 (480)
Q Consensus 256 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~----------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (480)
-+.+.+++|.+.|+.. .+.| ++.++..+..++.. .+.+++|...++++++++|+++.+|..+..+|..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 3445566666666665 3334 35555555555543 3456789999999999999999999999999988
Q ss_pred cCC-----------hhHHHHHHHHHHhC
Q 038395 324 IGN-----------WDGVARVRTLMKEK 340 (480)
Q Consensus 324 ~g~-----------~~~a~~~~~~m~~~ 340 (480)
.|+ +++|.+.|++..+.
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHhHHHhhhhhhccccc
Confidence 764 56777777776654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.08 E-value=0.00095 Score=57.69 Aligned_cols=122 Identities=9% Similarity=-0.030 Sum_probs=61.0
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHH
Q 038395 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEA 264 (480)
Q Consensus 186 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 264 (480)
+.|++++|+..+++..+.. +-|...+..+...++..|++++|.+.++...+. .|+ ...+..+...+...+..+++
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccHHH
Confidence 4566666666666666542 224455666666666666666666666666532 343 22233333333333333332
Q ss_pred HHHHHhC--CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 038395 265 YKLVMDM--KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311 (480)
Q Consensus 265 ~~~~~~m--~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~ 311 (480)
..-.... ...|+ ...+......+...|+.++|...++++.+..|..+
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~ 133 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 133 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 2221111 11121 22233334455566666666666666666666543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.74 E-value=0.0065 Score=47.52 Aligned_cols=61 Identities=11% Similarity=-0.082 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038395 248 YGCMVNLLSRAGQVEEAYKLVMDM--------KIEPD-----SVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308 (480)
Q Consensus 248 ~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~ 308 (480)
|+.+..+|...|++++|...+++. ...++ ...+..+..+|...|++++|...|++++++.|
T Consensus 58 ~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 58 HAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 444455555555555555444433 11222 22466778889999999999999999888654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.62 E-value=0.0011 Score=57.26 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=11.5
Q ss_pred HHHHHHcCCHHHHHHHHHhC
Q 038395 252 VNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 252 i~~~~~~g~~~~A~~~~~~m 271 (480)
...+.+.|+.++|.+.++++
T Consensus 106 a~~~~~~gd~~~A~~~~~~a 125 (264)
T d1zbpa1 106 FNLSMVSQDYEQVSELALQI 125 (264)
T ss_dssp HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHH
Confidence 34455566666666666554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.61 E-value=0.0078 Score=42.49 Aligned_cols=64 Identities=14% Similarity=-0.088 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-------chhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLAN-------SGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 278 ~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
..+-.+...+.+.|+++.|...++++++..|.+ ..++..|..+|.+.|++++|...+++..+..
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 344567888999999999999999999865432 3478889999999999999999999987653
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.39 E-value=0.099 Score=37.94 Aligned_cols=140 Identities=9% Similarity=0.115 Sum_probs=94.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHH
Q 038395 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264 (480)
Q Consensus 185 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 264 (480)
...|..++..++..+..... +..-|+-++.-....-+-+-..+.++.+-+-+.+. .++++...
T Consensus 13 ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~v 75 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSV 75 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHH
T ss_pred HHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHHH
Confidence 34566667777776665431 33344445544444455555555555555433332 24555555
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 038395 265 YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343 (480)
Q Consensus 265 ~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 343 (480)
...+-.++ .+...+...+.....+|.-+.-.+++..+.+.+..++.....+.++|.+.|...++.+++.+.-++|++
T Consensus 76 v~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 76 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 55554443 344556677888899999999999999988877778888899999999999999999999999999875
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.22 E-value=1.9 Score=39.15 Aligned_cols=158 Identities=8% Similarity=-0.061 Sum_probs=68.2
Q ss_pred HHhcCChHHHHHHHhhCCCCChhHHHHHHHHH--HhcCCHHHHHHHHhhcCCCC--HHHHHHHHHHHHHcCChHHHHHHH
Q 038395 20 YARGGDVLSAEKLFATMPQRSLVSLTTMLTCY--AKQGEVAAARVLFDDMEEKD--VVCWNVMIDGYAQHGLANEALVLF 95 (480)
Q Consensus 20 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~--~~~g~~~~A~~~f~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~ 95 (480)
..+.|+...+.++...+..--...|-..-..- ......++...++++-+.-- ...-...+..+.+.+++...++.|
T Consensus 16 a~~~~~~~~~~~~~~~L~dypL~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~ 95 (450)
T d1qsaa1 16 AWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS 95 (450)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC
T ss_pred HHHCCCHHHHHHHHhhhcCCCCHHHHHHHHHHhccccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhc
Confidence 34667777777777777531122222222111 12334555555555543310 011122234445555555444332
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhC----------------CCCCchhHHHHHHHHHHhCCCH
Q 038395 96 RRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSR----------------NIKVNVQVGTALINMYSKCGSL 159 (480)
Q Consensus 96 ~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----------------~~~~~~~~~~~li~~y~~~g~~ 159 (480)
. ..+++...-...+.+....|+.+.+......+-... +...+...+-.-+......|+.
T Consensus 96 ~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~ 170 (450)
T d1qsaa1 96 P-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNT 170 (450)
T ss_dssp C-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCH
T ss_pred c-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Confidence 1 112233333344444555555555444443333220 1112222333344455555666
Q ss_pred HHHHHHHHhcCCCChHHHHHHHH
Q 038395 160 KDARLVFDRVNDKDVVVWNSMIV 182 (480)
Q Consensus 160 ~~A~~~f~~m~~~~~~~~~~li~ 182 (480)
..|..+...+...........+.
T Consensus 171 ~~a~~l~~~l~~~~~~~~~a~~~ 193 (450)
T d1qsaa1 171 GLVTVLAGQMPADYQTIASAIIS 193 (450)
T ss_dssp HHHHHHHHTCCGGGHHHHHHHHH
T ss_pred hhHHHHHhhCChhHHHHHHHHHH
Confidence 66666666655433333333333
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.57 E-value=0.87 Score=32.90 Aligned_cols=84 Identities=13% Similarity=0.033 Sum_probs=61.2
Q ss_pred hCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038395 155 KCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNT 234 (480)
Q Consensus 155 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 234 (480)
+|+++......+-.+.. +....+.-+..+.++|+-++-.++++.+.+. -+|++.....+..||-+.|...++.+++.+
T Consensus 68 ~C~Nlk~vv~C~~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ 145 (161)
T d1wy6a1 68 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIE 145 (161)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 35555555555444432 3345566778888999999999999987663 577888888999999999999999999988
Q ss_pred hhhhcCC
Q 038395 235 MKDEYAI 241 (480)
Q Consensus 235 m~~~~~~ 241 (480)
..+. |+
T Consensus 146 ACe~-G~ 151 (161)
T d1wy6a1 146 ACKK-GE 151 (161)
T ss_dssp HHHT-TC
T ss_pred HHHH-hH
Confidence 8754 54
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.40 E-value=0.73 Score=33.91 Aligned_cols=109 Identities=12% Similarity=0.025 Sum_probs=47.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHh----CCCHHHH
Q 038395 87 LANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK----CGSLKDA 162 (480)
Q Consensus 87 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A 162 (480)
++++|++.|++..+.|.. .....+. .....+.+++...+....+. | ++.....|..+|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence 456666666666665521 1111221 12234555666666655544 3 22333444444433 2334555
Q ss_pred HHHHHhcCC-CChHHHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 038395 163 RLVFDRVND-KDVVVWNSMIVGYAM----HGFGKDALQLFNEMCRIR 204 (480)
Q Consensus 163 ~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 204 (480)
.+.|++..+ .+..+...|...|.. ..+.++|.++|++..+.|
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 555554432 233333333333332 224444555555444433
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.53 E-value=0.79 Score=33.21 Aligned_cols=47 Identities=17% Similarity=0.128 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 038395 293 IALGEKIAEYLISQNLANS-GTYVLLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
.++|..+++.+.+.+|.+. ..+..|.-+|.+.|++++|.+.++.+.+
T Consensus 54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3455555555555555432 3444555555555555555555555544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=91.88 E-value=1.2 Score=32.56 Aligned_cols=49 Identities=10% Similarity=-0.015 Sum_probs=25.6
Q ss_pred ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH----cCChhHHHHHHHHHHhCCC
Q 038395 292 NIALGEKIAEYLISQNLANSGTYVLLSNIYAA----IGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 342 (480)
|.++|.+.+++..+.+. +.+...|..+|.. ..+.++|.+.+++..+.|.
T Consensus 74 d~~~A~~~~~~aa~~g~--~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLND--QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHhhhhccCc--chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 44555555555555432 2344445555544 2355666666666555554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.36 E-value=0.95 Score=30.93 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=50.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHH
Q 038395 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253 (480)
Q Consensus 189 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 253 (480)
+.-++.+-++.+....+.|+.....+.+.||.+.+++..|.++|+.++.+. .++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~--~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCcHHHHHHHHH
Confidence 455777777777778889999999999999999999999999999988543 345667777664
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.42 E-value=2.6 Score=30.35 Aligned_cols=71 Identities=13% Similarity=0.098 Sum_probs=45.8
Q ss_pred CCccHHHHHHHHHHHcC---CHHHHHHHHHhC-CCCC-C-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchh
Q 038395 243 PKVEHYGCMVNLLSRAG---QVEEAYKLVMDM-KIEP-D-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313 (480)
Q Consensus 243 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~p-~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 313 (480)
|++.+--...-++.+.. +++++..++++. ...| + ...+..|.-+|.+.|+++.|.+.++.+++.+|.+..+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 33333333344444443 345667777666 2233 3 2456667778889999999999999999999988644
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.06 E-value=1.5 Score=29.96 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHH
Q 038395 88 ANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI 150 (480)
Q Consensus 88 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 150 (480)
.=++.+-++.+....+.|++....+.+.||-+.+++..|..+++.++.. ..++...|..++
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yil 82 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHH
Confidence 3355666677777788899999999999999999999999999888764 333445565554
|