Citrus Sinensis ID: 038436

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350---
Protein Sequence
ESQKQCGDSLSSRSNINEEYTEAFRTKSYVEMWSKAQSQLAARTSFNGLSSTSSVSFYVHLSDYLLEPQQETLMKMIERLHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYRRIQRVMKISENMHDCRATFKHLAAFASSKNPLSIISMVQFRDYHHGKMLLFSSLTSKGKKIRRRAKFNKLLKKVGAYSLVISQTALLIALLVFVLHSMVGIVAAPGLMVPCLALFQRKLTKLVRRGPKTSLLQKFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCFRSGNSEILKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQEIMVHQDKSCP
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHHHccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
esqkqcgdslssrsNINEEYTEAFRTKSYVEMWSKAQSQLAARtsfnglsstsSVSFYVHLSDYLLEPQQETLMKMIERLHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYRRIQRVMKISENMHDCRATFKHLAAfassknplsiisMVQFRDYHHGKMLLFSSLTSKGKKIRRRAKFNKLLKKVGAYSLVISQTALLIALLVFVLHSMVgivaapglmvPCLALFQRKLTKlvrrgpktSLLQKFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCFRSGNSEILKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQEIMVHQDKSCP
Flexible Loop (DISEMBL)
esqkqcgdslssrsnineeyTEAFRTKSYVEMWSKAQSQLAARTSFNGLSSTSSVSFYVHLSDYLLEPQQETLMKMIERLHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYRRIQRVMKISENMHDCRATFKHLAAFASSKNPLSIISMVQFRDYHHGKMLLFssltskgkkiRRRAKFNKLLKKVGAYSLVISQTALLIALLVFVLHSMVGIVAAPGLMVPCLALFQRKLTKLVRRGPKTSLLQKFAAQLDVAAKGVYILVNDFDTISRMVRRLYDevehrkdiarmcfRSGNSEILKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQEImvhqdkscp
Low Complexity Region (SEG)
ESQKQCGDSLSSRSNINEEYTEAFRTKSYVEMWSKAQSQLAARTSFNGLSSTSSVSFYVHLSDYLLEPQQETLMKMIERLHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYRRIQRVMKISENMHDCRATFKHLAAFASSKNPLSIISMVQFRDYHHGKMLLFSSLTSKGKKIRRRAKFNKLLKKVGAYSLVISQTALLIALLVFVLHSMVGIVAAPGLMVPCLALFQRKLTKLVRRGPKTSLLQKFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCFRSGNSEILKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQEIMVHQDKSCP
Disordered region (IsUnstruct)
********************************************************FYVHLSDYLLEPQQETLMKMIERLHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYRRIQRVMKISENMHDCRATFKHLAAFASSKNPLSIISMVQFRDYHHGKMLLFSSLTSKGKKIRRRAKFNKLLKKVGAYSLVISQTALLIALLVFVLHSMVGIVAAPGLMVPCLALFQRKLTKLVRRGPKTSLLQKFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCFRSGNSEILKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQEIMV*******
Disordered Region (DISOPRED)
******************EYTEAFRTKSYVEMWS*************************HLSDYLLEPQQETLMKMIERLHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYRRIQRVMKISENMHDCRATFKHLAAFASSKNPLSIISMVQFRDYHHGK*******************FNKLLKKVGAYSLVISQTALLIALLVFVLHSMVGIVAAPGLMVPCLALFQRKLTKLV************AAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCFRSGNSEILKEVMKEF*******L**LKELEDHICLCFLTINRSRRLVLQ***********
Disordered Region (DISEMBL)
*************SNINEEYTEAFRTKSYVEMWSKAQSQLAARTSFNGLSSTSSVSFYVHLSDYLLEPQQETLMKMIERLHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYRRIQRVMKISENMHDCRATFKHLAAFASSKNPLSIISMVQFRDYHHGKMLLFSSLTSKGKKIRRRAKFNKLLKKVGAYSLVISQTALLIALLVFVLHSMVGIVAAPGLMVPCLALFQRKLTKLVRRGPKTSLLQKFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCFRSGNSEILKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQEIM********
Disordered Region (DISPRO)
************RSNINEEYTEAFRTKSYVEMWSKAQSQLA************SVSFYVHLSDYLLEPQQETLMKMIERLHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYRRIQRVMKISENMHDCRATFKHLAAFASSKNPLSIISMVQFRDYHHGKMLLFSSLTSKGKKIRRRAKFNKLLKKVGAYSLVISQTALLIALLVFVLHSMVGIVAAPGLMVPCLALFQRKLTKLVRRGPKTSLLQKFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCFRSGNSEILKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQEIMV*******
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ESQKQCGDSLSSRSNINEEYTEAFRTKSYVEMWSKAQSQLAARTSFNGLSSTSSVSFYVHLSDYLLEPQQETLMKMIERLHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYRRIQRVMKISENMHDCRATFKHLAAFASSKNPLSIISMVQFRDYHHGKMLLFSSLTSKGKKIRRRAKFNKLLKKVGAYSLVISQTALLIALLVFVLHSMVGIVAAPGLMVPCLALFQRKLTKLVRRGPKTSLLQKFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCFRSGNSEILKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQEIMVHQDKSCP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	353	2.2.26 [Sep-21-2011]
Q6DYE5	390	UPF0496 protein At1g20180	yes	no	0.974	0.882	0.441	5e-73
Q9SMU4	416	UPF0496 protein At3g49070	no	no	0.895	0.759	0.312	5e-31
A2XCJ1	378	UPF0496 protein 3 OS=Oryz	N/A	no	0.898	0.838	0.279	6e-28
Q10RR9	378	UPF0496 protein 3 OS=Oryz	yes	no	0.898	0.838	0.276	2e-27
Q5Z8N6	408	Putative UPF0496 protein	no	no	0.271	0.235	0.505	1e-21
A2YH25	408	Putative UPF0496 protein	N/A	no	0.271	0.235	0.505	2e-21
Q9LT84	382	UPF0496 protein At3g19330	no	no	0.898	0.829	0.263	3e-16
Q9LJK4	360	UPF0496 protein At3g19250	no	no	0.878	0.861	0.252	6e-13

>sp|Q6DYE5|U496K_ARATH UPF0496 protein At1g20180 OS=Arabidopsis thaliana GN=At1g20180 PE=2 SV=2

 Score =  275 bits (702), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 161/365 (44%), Positives = 240/365 (65%), Gaps = 21/365 (5%)

Query: 1   ESQKQCGDSLSSRSNINEEYTEAFRTKSYVEMWSKAQSQLA------ARTSFNGLSSTSS 54
           +S K+C  SL+S+ ++NEEY EAFRT SY+E  +KA+ QL         +S    SS+S 
Sbjct: 21  KSDKECCRSLTSKLSVNEEYKEAFRTNSYLETRTKAEDQLGITSCSKLSSSSPSPSSSSD 80

Query: 55  VSFYVHLSDYLLEPQQETLMKMIERLHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANY 114
           +SF+ H +DYLL+P QETL  +++     +L++ +F+ S EA +VC+ LL+ + Q + N+
Sbjct: 81  LSFHSHFTDYLLDPPQETLDALMQDSSLDNLIVTFFDLSSEACDVCETLLQCLQQIKINH 140

Query: 115 RRIQRVMKISENMHD------------CRATFKHLAAFASSKNPLS-IISMVQFRDYHHG 161
            +I+RVMKI + + +            C   F+ L+ FA+ KNPL  I++  QFR  H  
Sbjct: 141 NKIKRVMKIGKRVCNGAKTLECSPEMLCALIFQELSRFAALKNPLCRIVNEAQFRIVHDA 200

Query: 162 KMLLFSSLTSKGKKIRRRAKFNKLLKKVGAYSLVISQTALLIALLVFVLHSMVGIVAAPG 221
              L + LTSK ++IRR+ +F K  KK+G YSLVI+ +A++I LL+  LHS++G+ AAP 
Sbjct: 201 NSDLLTKLTSKKRRIRRKIRFFKFCKKLGGYSLVITHSAIVITLLIIALHSILGVFAAPA 260

Query: 222 LMVPC-LALFQRKLTK-LVRRGPKTSLLQKFAAQLDVAAKGVYILVNDFDTISRMVRRLY 279
           L+  C   L ++K  K  + +  K + L+K   Q+D+AAKG++IL+ND DT+SR+  RL 
Sbjct: 261 LLGLCSFCLLRKKKAKGRMHKSNKDTTLEKLGTQIDIAAKGMFILINDLDTLSRLAGRLC 320

Query: 280 DEVEHRKDIARMCFRSGNSEILKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRL 339
           DE+EHRK +A MC +S   E+LKE ++EF+ HE  F +QL+ELE+H+ LCF TINRSRRL
Sbjct: 321 DEIEHRKTVAAMCAKSRKIEVLKEALREFNGHEEKFSDQLQELEEHLYLCFHTINRSRRL 380

Query: 340 VLQEI 344
           VL +I
Sbjct: 381 VLAQI 385

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMU4|U496N_ARATH UPF0496 protein At3g49070 OS=Arabidopsis thaliana GN=At3g49070 PE=2 SV=1

 Score =  135 bits (340), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 110/352 (31%), Positives = 171/352 (48%), Gaps = 36/352 (10%)

Query: 15  NINEEYTEAFRTKSYVEMWSKA---------QSQLAARTSFNGLSSTSSVSFYVHLSDYL 65
           ++ EEY  AFRT+SY   W++           S  ++       S+++ +  Y   +  L
Sbjct: 70  DVREEYANAFRTESYNHFWTRVVQLSRKKSAVSSSSSSPPIESSSTSARLMSYRLFAHNL 129

Query: 66  LEPQQETLMKMIE----RLHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYRRIQRVM 121
           L+P   T+ ++++      H   LL DYF  +  A+ +C  LL+++H  R+ Y  ++   
Sbjct: 130 LDPDLNTITRILDVSRVGRHTRTLLSDYFLETANAFLLCTQLLKNIHHLRSKYESLKPKF 189

Query: 122 KISENMHDCRATFKHLAAFASSKNPLSIISMVQFRDYHHGKMLLFSSLTSKGKKIRRRAK 181
             SEN H+  A        +   +P  I S  + +    G + L   L S+  K R  AK
Sbjct: 190 H-SEN-HNSLALIDQFTEISKWFDPF-ISSGSRIQLIRSGCLYLLKRLESRRDKTR--AK 244

Query: 182 FNKLLKKVGAYSLVISQTALLIALLVFVLHSMVGIVAAPGLMVPCL--ALFQRKLTKLVR 239
             KL+  +   S ++        ++    H+    +AAP L+      A  + KLTK   
Sbjct: 245 L-KLINGLTHSSGLLVLALTTTLIVTIASHAFALFLAAPTLLASQFKPAGLRNKLTKT-- 301

Query: 240 RGPKTSLLQKFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCFRSGNSE 299
                      AA+LDVAAKG YIL  D DTISR+V R+ DEV H + +A      G+  
Sbjct: 302 -----------AARLDVAAKGTYILSRDLDTISRLVTRINDEVNHVRAMAEFWVGRGSGR 350

Query: 300 IL--KEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQEIMVHQD 349
           +   +EV +E    E SF E+L ELE+HI LCF+TINR+R L+++EI+   D
Sbjct: 351 VRGSEEVARELKRCEESFSEELDELEEHIYLCFMTINRARNLLVKEILDSDD 402

Arabidopsis thaliana (taxid: 3702)

>sp|A2XCJ1|U496C_ORYSI UPF0496 protein 3 OS=Oryza sativa subsp. indica GN=OsI_009784 PE=3 SV=2

 Score =  125 bits (313), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 171/358 (47%), Gaps = 41/358 (11%)

Query: 11  SSRSNINEEYTEAFRTKSYVEMWSKA-------QSQLAAR-TSFNGLSSTSSVSFYVHLS 62
           SS  +  EEYT AFRT+SY + W++         + L  R     G +++  +  Y   +
Sbjct: 29  SSSFDFREEYTSAFRTESYNDFWARVLDITLAHGAALVPRHGGGGGCAASKRLPSYRLFA 88

Query: 63  DYLLEPQQETLMKMIE-------RLHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYR 115
           ++LLEP Q  +   +        R     LL  Y+  +  A  +C  LL+ +   R  YR
Sbjct: 89  EHLLEPDQRAVAAALASPRGSRLRPDVRGLLAAYYAETANASFLCSHLLKDIEHIRLRYR 148

Query: 116 RIQRVM-KISENMHDCRATFKHLAAFASS-KNPLSIISMVQ--FRDYHHGKMLLFSSLTS 171
            ++  + K++ ++         LA  +++   P + ++  Q   R+   G   L   L +
Sbjct: 149 PLKHTLRKLASDV-----GVSGLADVSAALGQPFTALAASQGRLREVQAGSGDLLRGLDA 203

Query: 172 KGKKIRRRAKFNKLLKKVGAYSLVISQTALLIALLVFVLHSMVGIVAAPGLMVPCLALFQ 231
             KK R R +    L++  + S V +   + +      +H +    A P +M P   L +
Sbjct: 204 GRKKARHRIRSVARLRRALSVSFVTAVAVVAVVGACIGVHILAAFAAFP-MMSPAW-LGE 261

Query: 232 RKLTKLVRRGPKTSLLQKFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARM 291
           R  +    R  + +L+Q     L+ AAKG YIL  D +TISR+V R+ DE EH   + R+
Sbjct: 262 RFFSG---RAARRALVQ-----LEAAAKGTYILNRDMETISRLVARVRDEGEHMVALLRL 313

Query: 292 CFR-------SGNSEILKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQ 342
           C          G   +++EV+++   +E SF +QL ELE+H+ LCF+TIN++R +V+ 
Sbjct: 314 CVEHRPAAGAGGKGRLVQEVLRQLSKNEESFRQQLDELEEHLFLCFMTINKARIMVMN 371

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q10RR9|U496C_ORYSJ UPF0496 protein 3 OS=Oryza sativa subsp. japonica GN=Os03g0148000 PE=2 SV=1

 Score =  123 bits (308), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/358 (27%), Positives = 170/358 (47%), Gaps = 41/358 (11%)

Query: 11  SSRSNINEEYTEAFRTKSYVEMWSKA-------QSQLAAR-TSFNGLSSTSSVSFYVHLS 62
           SS  +  EEYT AFRT+SY + W++         + L  R     G +++  +  Y   +
Sbjct: 29  SSSFDFREEYTSAFRTESYNDFWARVLDITLAHGAALVPRHGGGGGCAASKRLPSYRLFA 88

Query: 63  DYLLEPQQETLMKMIE-------RLHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYR 115
           ++LLEP Q  +   +        R     LL  Y+  +  A  +C  LL+ +   R  YR
Sbjct: 89  EHLLEPDQRAVAAALASPRGSRLRPDVRGLLAAYYAETANASFLCSHLLKDIEHIRLRYR 148

Query: 116 RIQRVM-KISENMHDCRATFKHLAAFASS-KNPLSIISMVQ--FRDYHHGKMLLFSSLTS 171
            ++  + K++ ++         LA  +++   P + ++  Q   R+   G   L   L +
Sbjct: 149 PLKHTLRKLASDV-----GVSGLADVSAALGQPFTALAASQGRLREVQAGSGDLLRGLDA 203

Query: 172 KGKKIRRRAKFNKLLKKVGAYSLVISQTALLIALLVFVLHSMVGIVAAPGLMVPCLALFQ 231
             KK R R +    L++  + S V +   + +      +H +    A P +M P   L +
Sbjct: 204 GRKKARHRIRSVARLRRALSVSFVTAVAVVAVVGACIGVHILAAFAAFP-MMSPAW-LGE 261

Query: 232 RKLTKLVRRGPKTSLLQKFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARM 291
           R  +    R  + +L+Q     L+ AAKG YIL  D +TISR+V R+ DE EH   + R+
Sbjct: 262 RFFSG---RAARRALVQ-----LEAAAKGTYILNRDMETISRLVARVRDEGEHMVALRRL 313

Query: 292 CFR-------SGNSEILKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQ 342
           C          G   +++EV+++   +E SF +QL ELE+H+ LCF+T N++R +V+ 
Sbjct: 314 CVEHRPAAGAGGKGRLVQEVLRQLSKNEESFRQQLDELEEHLFLCFMTTNKARIMVMN 371

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5Z8N6|U496B_ORYSJ Putative UPF0496 protein 2 OS=Oryza sativa subsp. japonica GN=Os06g0718300 PE=3 SV=1

 Score =  103 bits (258), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/97 (50%), Positives = 66/97 (68%), Gaps = 1/97 (1%)

Query: 249 KFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCFRS-GNSEILKEVMKE 307
           +  A LD AA+G YI+  D DT+SRMVRR +DE+EH +D+AR+  R  G   +L+EV +E
Sbjct: 289 RAGATLDAAARGAYIVGRDLDTVSRMVRRAHDELEHGRDVARIAMRGHGERPLLQEVARE 348

Query: 308 FHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQEI 344
               E     QL ELE+H+CLC +TINR+RRLV  E+
Sbjct: 349 EEECEEDLRAQLAELEEHVCLCLITINRTRRLVAHEM 385

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YH25|U496B_ORYSI Putative UPF0496 protein 2 OS=Oryza sativa subsp. indica GN=OsI_023618 PE=3 SV=2

 Score =  103 bits (258), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/97 (50%), Positives = 66/97 (68%), Gaps = 1/97 (1%)

Query: 249 KFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCFRS-GNSEILKEVMKE 307
           +  A LD AA+G YI+  D DT+SRMVRR +DE+EH +D+AR+  R  G   +L+EV +E
Sbjct: 289 RAGATLDAAARGAYIVGRDLDTVSRMVRRAHDELEHGRDVARIAMRGHGERPLLQEVARE 348

Query: 308 FHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQEI 344
               E     QL ELE+H+CLC +TINR+RRLV  E+
Sbjct: 349 EEECEEDLRAQLAELEEHVCLCLITINRTRRLVAHEM 385

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9LT84|U496M_ARATH UPF0496 protein At3g19330 OS=Arabidopsis thaliana GN=At3g19330 PE=2 SV=2

 Score = 86.3 bits (212), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 160/353 (45%), Gaps = 36/353 (10%)

Query: 9   SLSSRS-NINEEYTEAFRTKSYVEMWSKAQSQLAARTSFNGLSSTSSVSFYVHLSDYLLE 67
           S+SS + N++ E   AF+T SY ++ S+    +   T  +       +     L   +L+
Sbjct: 39  SISSPTFNLSRELAHAFQTPSYHDVRSRVHV-VVDLTQIHHRLIQPDIEL---LLSQVLQ 94

Query: 68  PQQETL---MKMIERLHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRA----------NY 114
           P +E +   ++ +++    +L+  YF+ S +A  +C  L ++VH  R           N 
Sbjct: 95  PNKECVQEAIRHVKQTTLTNLVSTYFQHSEDATRLCLNLYQNVHSARHHLYTPLLDLFNI 154

Query: 115 RRIQRVMKISENMHDCRATFKHLAAFASSKNPLSIISMVQFRDYHHGKMLLFSSLTSK-G 173
                +  I E++  C   F       + +NP S      FRD      L FS L     
Sbjct: 155 FPGDSLPAIDESL--CDLAFDVFLKLDTFENPFSSPESYSFRD----TQLCFSQLKHNLD 208

Query: 174 KKIRR-RAKFNKLLKKVGAYSLVISQTALLIALLVFVLHSMVGIVAAPGLMVPCLALFQR 232
           +++R+ R++   +       SL +    + +A    V+ S     A P L+V    L   
Sbjct: 209 RRLRKSRSRVRLIHHATAGSSLCLVAAVVAVAASAVVIASH----ALPILLVVAGPLCSP 264

Query: 233 KLTKLVRRGPKTSLLQKFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARMC 292
            L    +R   T++      QL+ A+KG ++L  D DTI R+V RL+  +E+ K + R+ 
Sbjct: 265 YLPHSFKRKELTNI-----CQLNAASKGTFVLNKDLDTIDRLVSRLHTGIEYDKFLIRLG 319

Query: 293 FRSG-NSEILKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQEI 344
              G +   ++E++K           QLK+LEDHICL F  +N++R L+L EI
Sbjct: 320 LERGRDVHSIQEILKLLRKSHLPLTHQLKDLEDHICLWFTNVNKARSLLLTEI 372

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJK4|U496L_ARATH UPF0496 protein At3g19250 OS=Arabidopsis thaliana GN=At3g19250 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 153/361 (42%), Gaps = 51/361 (14%)

Query: 9   SLSSRSNINEEYTEAFRTKSYVEMWSKAQSQLAARTSFNGLSSTSSVSFYVHLSDYLLEP 68
           S++S  N++ E   AF+T SY ++ S+       + +     S              L P
Sbjct: 29  SVASTFNLSHELAHAFQTPSYHDIRSRLLVIDPTQENLELFLSQE------------LRP 76

Query: 69  QQETLMKMIERLH-----FHHLLMDYFEASVEAYNVCQLLLRSVHQTRAN-YRRIQRVMK 122
             E++ + +   H       +L+  YF+ S +A   C  L ++VH  R + Y  +  +  
Sbjct: 77  NNESVQEALSLRHAKQTTLTNLVSTYFQHSEDATRFCLNLYQNVHSARCHLYTPLLDLFN 136

Query: 123 I-SENMHD------CRATFKHLAAFASSKNPLSIISMVQFRDYHHGKMLLFSSLTSK-GK 174
           I   + H       C   F       + +NP +      F+D      L F  L  K   
Sbjct: 137 IFPRDSHSAIDESFCNLAFDVFLKLDTFENPFASPESHSFQD----TQLCFYQLADKLDT 192

Query: 175 KIRRRAKFNKLLKKVGAYS---LVISQTALLIALLVFVLHSMVGIVAAPG-LMVPCL--A 228
           +IR+     +LL    A S   LV +   +  +      H++  I+   G L  P L  +
Sbjct: 193 RIRKSKSRVRLLHHATAGSALCLVTAVVVVAASAAFIAYHALPTILVVAGPLCTPYLPHS 252

Query: 229 LFQRKLTKLVRRGPKTSLLQKFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDI 288
             +++L+ +               QL+VAAKG + L  D DTI R+V RL+  V++ K +
Sbjct: 253 FKKKELSNIF--------------QLNVAAKGTFALNKDLDTIDRLVSRLHTGVKNDKLL 298

Query: 289 ARMCFRSG-NSEILKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQEIMVH 347
            R+    G +   + E +K+      +   QL+ L DHIC  F  +N+SR L+L+EI+  
Sbjct: 299 IRLGLERGRDVYTIPEFVKQLRKSHVNHTHQLEVLVDHICRWFTNVNKSRSLLLKEILRP 358

Query: 348 Q 348
           Q
Sbjct: 359 Q 359

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	353
224083134	393	predicted protein [Populus trichocarpa]	0.985	0.885	0.567	1e-104
255539040	383	conserved hypothetical protein [Ricinus	0.988	0.911	0.538	1e-103
224065749	392	predicted protein [Populus trichocarpa]	0.985	0.887	0.557	1e-102
225457869	368	PREDICTED: UPF0496 protein At1g20180 [Vi	0.957	0.918	0.552	6e-95
356552052	378	PREDICTED: UPF0496 protein At1g20180-lik	0.951	0.888	0.484	4e-86
356562423	378	PREDICTED: UPF0496 protein At1g20180-lik	0.968	0.904	0.491	1e-85
357438547	369	hypothetical protein MTR_1g025960 [Medic	0.951	0.910	0.478	3e-78
49617727	390	hypothetical protein At1G20180 [Arabidop	0.974	0.882	0.441	3e-71
79347113	390	uncharacterized protein [Arabidopsis tha	0.974	0.882	0.441	3e-71
356509611	397	PREDICTED: UPF0496 protein At1g20180-lik	0.915	0.813	0.446	3e-69

>gi|224083134|ref|XP_002306952.1| predicted protein [Populus trichocarpa] gi|222856401|gb|EEE93948.1| predicted protein [Populus trichocarpa]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/365 (56%), Positives = 262/365 (71%), Gaps = 17/365 (4%)

Query: 2   SQKQCGDSLSSRSNINEEYTEAFRTKSYVEMWSKAQSQLAARTSFNGL----SSTSSVSF 57
           S K+   SLS++ N+NEEY EAFRTKSYVEMWSK Q QL  +T  +G+    S +SS+ F
Sbjct: 19  SPKERASSLSNKLNVNEEYKEAFRTKSYVEMWSKVQDQLR-KTRVDGVDKVTSPSSSLPF 77

Query: 58  YVHLSDYLLEPQQE-TLMKMIERLHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYRR 116
           Y HLSDYL EPQQ+ TL +MIE L FHH L+DYFEA  EA ++C LLL+ + QTRANY++
Sbjct: 78  YPHLSDYLFEPQQQATLGEMIESLRFHHFLIDYFEARSEACHICGLLLQCIQQTRANYKK 137

Query: 117 IQRVMKISENMHD--------CRATFKHLAAFASSKNPLSIISM-VQFRDYHHGKMLLFS 167
           I+RV+K+S+ + D        C A F+ LAA+A  +NPLS+ S  V+F D+H   ++L  
Sbjct: 138 IRRVIKLSKRVQDSADYSDKICIAMFRELAAYALLENPLSMFSTTVKFNDFHDNNLVLLH 197

Query: 168 SLTSKGKKIRRRAKFNKLLKKVGAYSLVISQTALLIALLVFVLHSMVGIVAAPGLMVPCL 227
            L S+ +KI R+AKF ++  KV    LVIS TALLIALLV   H +VGIVAAPG+M   L
Sbjct: 198 GLNSEQRKIMRKAKFRRICMKVAGGCLVISHTALLIALLVIATHGIVGIVAAPGIMGCSL 257

Query: 228 ALFQRKLTKLVRRGPKTSLLQK-FAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRK 286
            +F RK  KLV RG +TSLL+K   AQLD+AAKG YIL+ DFDT+SR+VRRL+DEVE RK
Sbjct: 258 YVF-RKQIKLVHRGLETSLLEKRLGAQLDLAAKGTYILIKDFDTMSRLVRRLFDEVERRK 316

Query: 287 DIARMCFRSGNSEILKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQEIMV 346
            +A MC R+   E+LKEV+KEFH H+  +LEQL+ELE HI LCF TINRSRRLV+ EIM 
Sbjct: 317 ALADMCVRNKKPELLKEVVKEFHTHDLCYLEQLEELEQHIYLCFHTINRSRRLVMDEIMA 376

Query: 347 HQDKS 351
             + S
Sbjct: 377 APENS 381

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539040|ref|XP_002510585.1| conserved hypothetical protein [Ricinus communis] gi|223551286|gb|EEF52772.1| conserved hypothetical protein [Ricinus communis]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/364 (53%), Positives = 258/364 (70%), Gaps = 15/364 (4%)

Query: 1   ESQKQCGDSLSSRSNINEEYTEAFRTKSYVEMWSKAQSQLAARTSFNGLSSTSSV----S 56
           +S+ + GDS S++ N+NEEY EAFRTKSY EMWSK Q QL  R S + +    S      
Sbjct: 19  KSRNERGDSFSNKLNVNEEYKEAFRTKSYEEMWSKIQGQLK-RKSVDEIERLRSSSSSLP 77

Query: 57  FYVHLSDYLLEP-QQETLMKMIERLHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYR 115
           F +HLSDYL EP QQ++  +M+E + FH LL+D+F+AS+EA N+C LLL S+ QTR NYR
Sbjct: 78  FCIHLSDYLFEPEQQDSSKEMLETMKFHCLLIDFFKASLEACNLCDLLLHSIQQTRVNYR 137

Query: 116 RIQRVMKISENMHD--------CRATFKHLAAFASSKNPLSIISMVQFRDYHHGKMLLFS 167
           RI+RV+K+S+ + D        C A F+ L AFA  +NPLS  S + F D H   ++L  
Sbjct: 138 RIERVIKLSKKVQDSQDYTDKACGAMFRELTAFALLRNPLSFASPLNFGDVHDNNLMLLH 197

Query: 168 SLTSKGKKIRRRAKFNKLLKKVGAYSLVISQTALLIALLVFVLHSMVGIVAAPGLMVPCL 227
            L S+ +KIR++ KFN++ KK+G Y LVI+ TA+L A+LV  LH ++GIVAAPGL + C 
Sbjct: 198 RLNSEQRKIRKKVKFNRICKKLGGYCLVITHTAILAAMLVMALHGIIGIVAAPGL-IGCS 256

Query: 228 ALFQRKLTKLVRRGPKTSLLQKFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKD 287
             F RK  K    G KT LL+K  AQLD+AAKG YIL ND DTISR+VR LY+E+EH+K 
Sbjct: 257 LYFSRKKIKFFSGGVKTRLLEKLCAQLDLAAKGTYILFNDLDTISRLVRSLYNEIEHKKA 316

Query: 288 IARMCFRSGNSEILKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQEIMVH 347
           +A +C RS N+E+LKEV+KEF+MH+S + EQL ELE+HI LCF TINRSRRLV+QEIMV 
Sbjct: 317 LADLCVRSKNAELLKEVVKEFYMHDSFYEEQLDELEEHIYLCFHTINRSRRLVIQEIMVQ 376

Query: 348 QDKS 351
           ++ +
Sbjct: 377 KNNA 380

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065749|ref|XP_002301952.1| predicted protein [Populus trichocarpa] gi|222843678|gb|EEE81225.1| predicted protein [Populus trichocarpa]

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/366 (55%), Positives = 265/366 (72%), Gaps = 18/366 (4%)

Query: 2   SQKQCGDSLSSRSNINEEYTEAFRTKSYVEMWSKAQSQLAARTSFNGLS-----STSSVS 56
           S K+ G+SLS++ N+NEEY EAFRTKSYVEMWSK Q QL  +TS +G+      S  S+ 
Sbjct: 19  SPKERGNSLSNKLNVNEEYKEAFRTKSYVEMWSKVQDQLR-KTSIDGVDKVASPSDPSLP 77

Query: 57  FYVHLSDYLLEPQQ-ETLMKMIERLHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYR 115
            Y HLSDYL EPQQ ETL +M+  L FHHLL+DYFEAS +A ++C+L L+ + QTR NY+
Sbjct: 78  LYHHLSDYLFEPQQQETLREMMGSLKFHHLLVDYFEASSKACHICELHLQCIQQTRGNYK 137

Query: 116 RIQRVMKISENMHD---CR-----ATFKHLAAFASSKNPLSII-SMVQFRDYHHGKMLLF 166
           +I+RV+K+S+ +HD   C      A F+ LAA+A  +NPLS+  S  +F D+H   ++L 
Sbjct: 138 KIRRVIKLSKRVHDSADCSDKIQGAMFRELAAYALLENPLSMFFSTEKFLDFHDDNVVLL 197

Query: 167 SSLTSKGKKIRRRAKFNKLLKKVGAYSLVISQTALLIALLVFVLHSMVGIVAAPGLMVPC 226
             LTS+ K+I R+ KF ++  +VG   LVIS TALLIALLV  +HSM GIVAAPGLM   
Sbjct: 198 HGLTSQKKRIMRKTKFRRICIRVGGGCLVISHTALLIALLVIAIHSMAGIVAAPGLMGCS 257

Query: 227 LALFQRKLTKLVRRGPKTSLLQK-FAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHR 285
           L  F RK  KLV RG + S  +K   AQLD+AAKG+YIL+NDF+T+SR+ R L+DEVEH+
Sbjct: 258 LYAF-RKQIKLVHRGLEKSRFEKRLGAQLDLAAKGIYILINDFNTVSRLTRSLFDEVEHQ 316

Query: 286 KDIARMCFRSGNSEILKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQEIM 345
           K +A MC R+   E+LKEV+KEFH+H+SS+LEQL+ELE HI LCF TINRSRR+V+ EIM
Sbjct: 317 KALADMCVRNNKPELLKEVVKEFHIHDSSYLEQLEELERHIYLCFHTINRSRRIVMDEIM 376

Query: 346 VHQDKS 351
           V  + S
Sbjct: 377 VASNNS 382

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457869|ref|XP_002279229.1| PREDICTED: UPF0496 protein At1g20180 [Vitis vinifera] gi|302142720|emb|CBI19923.3| unnamed protein product [Vitis vinifera]

 Score =  353 bits (907), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 194/351 (55%), Positives = 243/351 (69%), Gaps = 13/351 (3%)

Query: 2   SQKQCGDSLSSRSNINEEYTEAFRTKSYVEMWSKAQSQLAARTSFNGLSSTSSVSFYVHL 61
           S+K   DSL ++SN+NEEY EAFRTKSY+E+ SK Q QL         SS+SS  FY+HL
Sbjct: 19  SRKSGVDSLCTKSNVNEEYMEAFRTKSYIEIHSKVQGQLMNELP----SSSSSFPFYIHL 74

Query: 62  SDYLLEPQQETLMKMIERLHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYRRIQRVM 121
           SDYLLEP QETL  MI+ L+ HHLL+DYF+AS+EA  +C++LL  +HQTRANY+ I+RV+
Sbjct: 75  SDYLLEPCQETLANMIQTLNLHHLLIDYFQASLEACKICEILLLRIHQTRANYQIIKRVI 134

Query: 122 KISENMHDCR--------ATFKHLAAFASSKNPLSIISMVQFRDYHHGKMLLFSSLTSKG 173
           K+++ + D            F+ L  F+   NPL     VQF D H     L   L SK 
Sbjct: 135 KLTKRLDDGEYYTTEQYGTIFRELTKFSKLTNPLMAAGPVQFHDIHESCKTLLPKLVSKS 194

Query: 174 KKIRRRAKFNKLLKKVGAYSLVISQTALLIALLVFVLHSMVGIVAAPGLMVPCLALFQRK 233
           KK RRRAKFN+L K+V  +SL+IS +A+ +AL+V  +HS+VGIV APGLM  C     R 
Sbjct: 195 KKTRRRAKFNRLCKRVAGFSLIISYSAVAVALVVLAIHSIVGIVIAPGLM-GCFVGAVRN 253

Query: 234 LTKLVRRGPKTSLLQKFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCF 293
                RRG  T  L++   QLD AAKG+YILVNDFDT+SR+V RLYDEVEH K I  MC 
Sbjct: 254 RYVFARRGLGTCFLERLGEQLDAAAKGIYILVNDFDTMSRLVSRLYDEVEHSKAIVDMCV 313

Query: 294 RSGNSEILKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQEI 344
           R+G SE+L EV+KEFH+H+S FLEQL+ELEDHI LC LTIN+SR LV+QEI
Sbjct: 314 RNGKSEMLMEVVKEFHVHDSFFLEQLEELEDHIYLCLLTINKSRMLVIQEI 364

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552052|ref|XP_003544385.1| PREDICTED: UPF0496 protein At1g20180-like [Glycine max]

 Score =  324 bits (831), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 176/363 (48%), Positives = 243/363 (66%), Gaps = 27/363 (7%)

Query: 2   SQKQCG-DSLSSRSNINEEYTEAFRTKSYVEMWSKAQSQLAARTSFNGLSSTSSVSFYVH 60
           S+K+C  D    + ++NEEY EAFRTKSY+E+ +KAQ  +   ++    SS+SS+   + 
Sbjct: 16  SRKECNEDRWYKKQSVNEEYLEAFRTKSYIEICNKAQEGIEKTSTKMLTSSSSSIPLCMQ 75

Query: 61  LSDYLLEPQQETLMKMIERLHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYRRIQRV 120
           L++YLLEP+QE +  + +RL  HHLL+DYFEAS+EA   C  +L ++H  R  YRRI RV
Sbjct: 76  LTEYLLEPRQEMIANIAQRLKLHHLLVDYFEASLEACRCCDTILEAIHSMRLAYRRITRV 135

Query: 121 MKISEN------------MHDCRATFKHLAAFASSKNPLS-IISMVQFRDYHHGKMLLFS 167
           +K+S+             +H+    ++ LA+FA  KNPLS +IS V+FRD H   + L  
Sbjct: 136 VKLSKTVLDDEDDDNDDKIHNKYVIYRELASFAMQKNPLSVVISTVKFRDIHDRHVELLQ 195

Query: 168 SLTSKGKKIRRRAKFNKLLKKVGAYSLVISQTALLIALLVFVLHSMVGIVAAPGLMVPCL 227
            L S  ++IRRR    ++ KKV   +L+ + + +L+ALLVF  HS+VG+VAAP ++   +
Sbjct: 196 RLKSTRREIRRRLTLKRVCKKVLGIALITAHSVVLVALLVFAFHSIVGLVAAPSIVCGLV 255

Query: 228 ALFQRKLTKLVRRGP---KTSLL--QKFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEV 282
            LF       V+RG    ++S    +K   QLDVAAKGVY+L ND DT+SRMV+RL+DEV
Sbjct: 256 GLF-------VKRGRERFRSSYCDDEKLCEQLDVAAKGVYVLSNDLDTMSRMVKRLHDEV 308

Query: 283 EHRKDIARMCFRSGNSEI-LKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVL 341
           EHRK +A +C R+  SEI LK+VM++FH HESSFLEQL+ELE HI LCFLT NRSRRLV+
Sbjct: 309 EHRKVVAEVCVRNEKSEILLKQVMRDFHEHESSFLEQLEELEGHIYLCFLTTNRSRRLVV 368

Query: 342 QEI 344
           QEI
Sbjct: 369 QEI 371

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562423|ref|XP_003549471.1| PREDICTED: UPF0496 protein At1g20180-like [Glycine max]

 Score =  323 bits (827), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 175/356 (49%), Positives = 244/356 (68%), Gaps = 14/356 (3%)

Query: 2   SQKQCG-DSLSSRSNINEEYTEAFRTKSYVEMWSKAQSQLAARTSFNGLSSTSS--VSFY 58
           S+K+C  D L  + ++NEEY EAFRTKSY+E+ +KAQ  +  +TS   L+S+SS  +   
Sbjct: 17  SRKECEEDRLCKKQSVNEEYLEAFRTKSYIEICNKAQGGIG-KTSTKMLTSSSSSSIPLC 75

Query: 59  VHLSDYLLEPQQETLMKMIERLHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYRRIQ 118
           + L++YLLEP+QE +  + +RL  HHLL+DYFEAS+EA   C  +L ++H  R +YRRI 
Sbjct: 76  MQLTEYLLEPRQEMIANITQRLKLHHLLVDYFEASLEACRCCDTILEAIHSMRLSYRRIT 135

Query: 119 RVMKISENMHDCRAT----FKHLAAFASSKNPLSI-ISMVQFRDYHHGKMLLFSSLTSKG 173
           R++K+S+ + D   T    ++ LA+FA   NPLS+ IS V+FRD H   + L   L S  
Sbjct: 136 RIVKLSKTVLDDDDTKGVIYRELASFALQNNPLSVAISSVKFRDIHDRYVELLKRLKSTS 195

Query: 174 KKIRRRAKFNKLLKKVGAYSLVISQTALLIALLVFVLHSMVGIVAAPGLMVPCLALFQRK 233
           K+IRRR    ++ KKV   +L+ S + +L+ALLVF  HS+VG+VAAP ++   + LF +K
Sbjct: 196 KEIRRRLTLKRVCKKVAGIALITSHSVVLVALLVFAFHSIVGLVAAPSIVGGLVGLFVKK 255

Query: 234 ----LTKLVRRGPKTSLLQKFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIA 289
                  +       +  ++   QLD+AAKGVY+L+ND DT+SRMV+RL DEVEHRK +A
Sbjct: 256 GRQRFMSISSNNNNNNCEERLCEQLDLAAKGVYVLINDLDTMSRMVKRLNDEVEHRKVVA 315

Query: 290 RMCFRSGNSEI-LKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQEI 344
            +C R+G SEI LK+VM++FH HESSFLEQL+ELE HI LCFLT NRSRRLV+Q+I
Sbjct: 316 EVCVRNGKSEILLKQVMRDFHEHESSFLEQLEELEGHIYLCFLTTNRSRRLVVQQI 371

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438547|ref|XP_003589549.1| hypothetical protein MTR_1g025960 [Medicago truncatula] gi|355478597|gb|AES59800.1| hypothetical protein MTR_1g025960 [Medicago truncatula]

 Score =  298 bits (762), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 170/355 (47%), Positives = 233/355 (65%), Gaps = 19/355 (5%)

Query: 2   SQKQC--GDSLSSRSNINEEYTEAFRTKSYVEMWSKAQSQLAARTSFNGLSSTSSVSF-- 57
           S+KQC   DSL  +SN+NEEY EAFRTKSY+E+ +KA+ Q     S   LS++ S S   
Sbjct: 16  SRKQCHKDDSLCRKSNVNEEYFEAFRTKSYIEICNKAKVQFEKTISTKRLSTSCSTSLPP 75

Query: 58  -YVHLSDYLLEPQQETLMKMIERLHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYRR 116
             ++L++YLLEP+QE +  M +    HHLL+DYFEAS+EA   C  +L  +H TR +Y R
Sbjct: 76  ICINLTEYLLEPRQEIITNMTQNFKVHHLLVDYFEASLEACRCCDTILEGIHATRLSYTR 135

Query: 117 IQRVMKISE---NMHDCRATFKHLAAFASS--KNPLSIISMVQFRDYHHGKMLLFSSLTS 171
            +R +K+S+   N    +  ++ LA F S    NPLS+IS +QF D  +  M L   LTS
Sbjct: 136 TKRFVKLSKRVINEPTKKDIYRELALFPSKLQNNPLSVISTMQFHDIRNRYMELLQKLTS 195

Query: 172 KGKKIRRRAKFNKLLKKVGAYSLVISQTALLIALLVFVLHSMVGIVAAPGLMVPCLALFQ 231
           K +KI+RR     + KKVG  +LV S  A+LIALLV   HS+VG+VAAP ++   + LF 
Sbjct: 196 KRRKIQRRLTLISVCKKVGGIALVTSHAAILIALLVVSFHSVVGLVAAPSIVGGLVGLF- 254

Query: 232 RKLTKLVRRGPKTSLLQKFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARM 291
                 ++R    +  ++   QLD AAKGV+IL+ND DT+SRMV+RL DEVEHRK +A++
Sbjct: 255 ------IKRIKNRTNCERLCEQLDAAAKGVFILINDLDTMSRMVKRLNDEVEHRKMVAQV 308

Query: 292 CFRSGNS--EILKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQEI 344
           C ++  S  EILK  M EF   ES FL++L+ELE+H+ LCFLT+N+SRRLVLQ+I
Sbjct: 309 CVKNVGSKCEILKRFMSEFSDQESRFLDELEELEEHVYLCFLTVNKSRRLVLQQI 363

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|49617727|gb|AAT67559.1| hypothetical protein At1G20180 [Arabidopsis thaliana]

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 161/365 (44%), Positives = 240/365 (65%), Gaps = 21/365 (5%)

Query: 1   ESQKQCGDSLSSRSNINEEYTEAFRTKSYVEMWSKAQSQLA------ARTSFNGLSSTSS 54
           +S K+C  SL+S+ ++NEEY EAFRT SY+E  +KA+ QL         +S    SS+S 
Sbjct: 21  KSDKECCRSLTSKLSVNEEYKEAFRTNSYLETRTKAEDQLGITSCSKLSSSSPSPSSSSD 80

Query: 55  VSFYVHLSDYLLEPQQETLMKMIERLHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANY 114
           +SF+ H +DYLL+P QETL  +++     +L++ +F+ S EA +VC+ LL+ + Q + N+
Sbjct: 81  LSFHSHFTDYLLDPPQETLDALMQDSSLDNLIVTFFDLSSEACDVCETLLQCLQQIKINH 140

Query: 115 RRIQRVMKISENMHD------------CRATFKHLAAFASSKNPLS-IISMVQFRDYHHG 161
            +I+RVMKI + + +            C   F+ L+ FA+ KNPL  I++  QFR  H  
Sbjct: 141 NKIKRVMKIGKRVCNGAKTLECSPETLCALIFQELSRFAALKNPLCRIVNEAQFRIVHDA 200

Query: 162 KMLLFSSLTSKGKKIRRRAKFNKLLKKVGAYSLVISQTALLIALLVFVLHSMVGIVAAPG 221
              L + LTSK ++IRR+ +F K  KK+G YSLVI+ +A++I LL+  LHS++G+ AAP 
Sbjct: 201 NSDLLTKLTSKKRRIRRKIRFFKFCKKLGGYSLVITHSAIVITLLIIALHSILGVFAAPA 260

Query: 222 LMVPC-LALFQRKLTK-LVRRGPKTSLLQKFAAQLDVAAKGVYILVNDFDTISRMVRRLY 279
           L+  C   L ++K  K  + +  K + L+K   Q+D+AAKG++IL+ND DT+SR+  RL 
Sbjct: 261 LLGLCSFCLLRKKKAKGRMHKSNKDTTLEKLGTQIDIAAKGMFILINDLDTLSRLAGRLC 320

Query: 280 DEVEHRKDIARMCFRSGNSEILKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRL 339
           DE+EHRK +A MC +S   E+LKE ++EF+ HE  F +QL+ELE+H+ LCF TINRSRRL
Sbjct: 321 DEIEHRKTVAAMCAKSRKIEVLKEALREFNGHEEKFSDQLQELEEHLYLCFHTINRSRRL 380

Query: 340 VLQEI 344
           VL +I
Sbjct: 381 VLAQI 385

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79347113|ref|NP_173445.2| uncharacterized protein [Arabidopsis thaliana] gi|158706505|sp|Q6DYE5.2|U496K_ARATH RecName: Full=UPF0496 protein At1g20180 gi|8778981|gb|AAF79896.1|AC022472_5 Contains similarity to At14a protein from Arabidopsis thaliana gi|4589123 [Arabidopsis thaliana] gi|91805813|gb|ABE65635.1| hypothetical protein At1g20180 [Arabidopsis thaliana] gi|332191826|gb|AEE29947.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  275 bits (702), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 161/365 (44%), Positives = 240/365 (65%), Gaps = 21/365 (5%)

Query: 1   ESQKQCGDSLSSRSNINEEYTEAFRTKSYVEMWSKAQSQLA------ARTSFNGLSSTSS 54
           +S K+C  SL+S+ ++NEEY EAFRT SY+E  +KA+ QL         +S    SS+S 
Sbjct: 21  KSDKECCRSLTSKLSVNEEYKEAFRTNSYLETRTKAEDQLGITSCSKLSSSSPSPSSSSD 80

Query: 55  VSFYVHLSDYLLEPQQETLMKMIERLHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANY 114
           +SF+ H +DYLL+P QETL  +++     +L++ +F+ S EA +VC+ LL+ + Q + N+
Sbjct: 81  LSFHSHFTDYLLDPPQETLDALMQDSSLDNLIVTFFDLSSEACDVCETLLQCLQQIKINH 140

Query: 115 RRIQRVMKISENMHD------------CRATFKHLAAFASSKNPLS-IISMVQFRDYHHG 161
            +I+RVMKI + + +            C   F+ L+ FA+ KNPL  I++  QFR  H  
Sbjct: 141 NKIKRVMKIGKRVCNGAKTLECSPEMLCALIFQELSRFAALKNPLCRIVNEAQFRIVHDA 200

Query: 162 KMLLFSSLTSKGKKIRRRAKFNKLLKKVGAYSLVISQTALLIALLVFVLHSMVGIVAAPG 221
              L + LTSK ++IRR+ +F K  KK+G YSLVI+ +A++I LL+  LHS++G+ AAP 
Sbjct: 201 NSDLLTKLTSKKRRIRRKIRFFKFCKKLGGYSLVITHSAIVITLLIIALHSILGVFAAPA 260

Query: 222 LMVPC-LALFQRKLTK-LVRRGPKTSLLQKFAAQLDVAAKGVYILVNDFDTISRMVRRLY 279
           L+  C   L ++K  K  + +  K + L+K   Q+D+AAKG++IL+ND DT+SR+  RL 
Sbjct: 261 LLGLCSFCLLRKKKAKGRMHKSNKDTTLEKLGTQIDIAAKGMFILINDLDTLSRLAGRLC 320

Query: 280 DEVEHRKDIARMCFRSGNSEILKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRL 339
           DE+EHRK +A MC +S   E+LKE ++EF+ HE  F +QL+ELE+H+ LCF TINRSRRL
Sbjct: 321 DEIEHRKTVAAMCAKSRKIEVLKEALREFNGHEEKFSDQLQELEEHLYLCFHTINRSRRL 380

Query: 340 VLQEI 344
           VL +I
Sbjct: 381 VLAQI 385

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509611|ref|XP_003523540.1| PREDICTED: UPF0496 protein At1g20180-like [Glycine max]

 Score =  268 bits (685), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 156/349 (44%), Positives = 222/349 (63%), Gaps = 26/349 (7%)

Query: 9   SLSSRSNINEEYTEAFRTKSYVEMWSKAQSQLAARTSFNGLSSTSSVSFYVHLSDYLLEP 68
           S     N+N EY EAFRTKSYVE+ + A  +L       G +ST++ SF +HL++YLLEP
Sbjct: 65  SFCGTPNVNGEYLEAFRTKSYVEICNIAHREL-------GNASTNTNSFKMHLTEYLLEP 117

Query: 69  QQETLMKMIERLHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYRRIQRVM-KISENM 127
            Q+   +++  +  H LL+DYFEAS+EA   C+ +++++HQTR  Y R+  V+ K+S+  
Sbjct: 118 PQQ---EIVANMKVHRLLVDYFEASLEACRCCETIVQAIHQTRLAYARVTNVVVKLSQTA 174

Query: 128 --HDCRATFKH--LAAFAS-SKNPLSIISMVQFRDYHHGKMLLFSSLTSKGKKIRRRAKF 182
             +D      H  L++F     NPLSI   VQF D H   M L S L SK +KI+R    
Sbjct: 175 PYYDQSQNPIHTQLSSFVLLQNNPLSI---VQFHDIHDRYMTLLSRLLSKKRKIQRILTI 231

Query: 183 NKLLKKVGAYSLVISQTALLIALLVFVLHSMVGIVAAPGLMVPCLA--LFQRKLTKLVRR 240
             + KKVG   L++SQ  L++ALLVF  HS++G VAA     PC+   + +++  +   R
Sbjct: 232 KSVCKKVGGIGLIVSQGVLMVALLVFAFHSVIGFVAA----APCIVGLVMKKRFKRSCER 287

Query: 241 GPKTSLLQKFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCFRS-GNSE 299
               +   K   QLDVAAKGVY+++N+ DT+SRMV+RL DEVEH + +A +C ++    E
Sbjct: 288 FNTRNSCMKLCEQLDVAAKGVYVVINELDTMSRMVKRLDDEVEHWRQVADICVKNYCKCE 347

Query: 300 ILKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQEIMVHQ 348
           ILK V+KEF  +ES+FL+ L+ELE+HI LCFLT+NR RRLV++EIM  Q
Sbjct: 348 ILKRVVKEFQDNESNFLDMLEELEEHIYLCFLTVNRFRRLVMEEIMGKQ 396

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	353
TAIR|locus:2198591	390	AT1G20180 "AT1G20180" [Arabido	0.912	0.825	0.429	8.2e-67
TAIR|locus:2101363	416	AT3G49070 [Arabidopsis thalian	0.889	0.754	0.330	3.1e-28
TAIR|locus:2090624	382	AT3G19330 "AT3G19330" [Arabido	0.903	0.835	0.279	2.6e-22
TAIR|locus:2094123	360	AT3G19250 "AT3G19250" [Arabido	0.886	0.869	0.269	1.1e-16
TAIR|locus:2116214	374	AT4G34320 "AT4G34320" [Arabido	0.736	0.695	0.206	2.7e-06
TAIR|locus:1005716837	412	AT5G66675 "AT5G66675" [Arabido	0.705	0.604	0.221	0.0002

TAIR|locus:2198591 AT1G20180 "AT1G20180" [Arabidopsis thaliana (taxid:3702)]

 Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
 Identities = 146/340 (42%), Positives = 222/340 (65%)

Query:    20 YTEAFRTKSYVEMWSKAQSQLAARTSFNGLSSTSSVSFYVHLSDYLLEPQQETLMKMIER 79
             Y E  RTK+  ++   + S+L++  S    SS+S +SF+ H +DYLL+P QETL  +++ 
Sbjct:    49 YLET-RTKAEDQLGITSCSKLSS--SSPSPSSSSDLSFHSHFTDYLLDPPQETLDALMQD 105

Query:    80 LHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYRRIQRVMKISENMHD---------- 129
                 +L++ +F+ S EA +VC+ LL+ + Q + N+ +I+RVMKI + + +          
Sbjct:   106 SSLDNLIVTFFDLSSEACDVCETLLQCLQQIKINHNKIKRVMKIGKRVCNGAKTLECSPE 165

Query:   130 --CRATFKHLAAFASSKNPLS-IISMVQFRDYHHGKMLLFSSLTSKGKKIRRRAKFNKLL 186
               C   F+ L+ FA+ KNPL  I++  QFR  H     L + LTSK ++IRR+ +F K  
Sbjct:   166 MLCALIFQELSRFAALKNPLCRIVNEAQFRIVHDANSDLLTKLTSKKRRIRRKIRFFKFC 225

Query:   187 KKVGAYSLVISQTALLIALLVFVLHSMVGIVAAPGLMVPC-LALFQRKLTK-LVRRGPKT 244
             KK+G YSLVI+ +A++I LL+  LHS++G+ AAP L+  C   L ++K  K  + +  K 
Sbjct:   226 KKLGGYSLVITHSAIVITLLIIALHSILGVFAAPALLGLCSFCLLRKKKAKGRMHKSNKD 285

Query:   245 SLLQKFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCFRSGNSEILKEV 304
             + L+K   Q+D+AAKG++IL+ND DT+SR+  RL DE+EHRK +A MC +S   E+LKE 
Sbjct:   286 TTLEKLGTQIDIAAKGMFILINDLDTLSRLAGRLCDEIEHRKTVAAMCAKSRKIEVLKEA 345

Query:   305 MKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQEI 344
             ++EF+ HE  F +QL+ELE+H+ LCF TINRSRRLVL +I
Sbjct:   346 LREFNGHEEKFSDQLQELEEHLYLCFHTINRSRRLVLAQI 385

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101363 AT3G49070 [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 117/354 (33%), Positives = 171/354 (48%)

Query:    15 NINEEYTEAFRTKSYVEMWSKAQSQLAARTSFNGLSSTS----SVSFYVHLSDY------ 64
             ++ EEY  AFRT+SY   W++   QL+ + S    SS+S    S S    L  Y      
Sbjct:    70 DVREEYANAFRTESYNHFWTRVV-QLSRKKSAVSSSSSSPPIESSSTSARLMSYRLFAHN 128

Query:    65 LLEPQQETLMKMIE--RLHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYRRIQRVMK 122
             LL+P   T+ ++++  R+  H   +   +  +E  N   LL   + +   + R     +K
Sbjct:   129 LLDPDLNTITRILDVSRVGRHTRTL-LSDYFLETANAF-LLCTQLLKNIHHLRSKYESLK 186

Query:   123 I---SENMHDCRATFKHLAAFASSKNP-LSIISMVQFRDYHHGKMLLFSSLTSKGKKIRR 178
                 SEN H+  A        +   +P +S  S +Q      G + L   L S+  K R 
Sbjct:   187 PKFHSEN-HNSLALIDQFTEISKWFDPFISSGSRIQL--IRSGCLYLLKRLESRRDKTRA 243

Query:   179 RAKF-NKLLKKVGAYSLVISQTALLIALLVFVLHSMVGIVAAPGLMVPCLALFQRKLTKL 237
             + K  N L    G   LV++ T  LI  +    H+    +AAP L+       Q K   L
Sbjct:   244 KLKLINGLTHSSGL--LVLALTTTLIVTIAS--HAFALFLAAPTLLAS-----QFKPAGL 294

Query:   238 VRRGPKTSLLQKFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCFRSGN 297
               +      L K AA+LDVAAKG YIL  D DTISR+V R+ DEV H + +A      G+
Sbjct:   295 RNK------LTKTAARLDVAAKGTYILSRDLDTISRLVTRINDEVNHVRAMAEFWVGRGS 348

Query:   298 SEIL--KEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQEIMVHQD 349
               +   +EV +E    E SF E+L ELE+HI LCF+TINR+R L+++EI+   D
Sbjct:   349 GRVRGSEEVARELKRCEESFSEELDELEEHIYLCFMTINRARNLLVKEILDSDD 402

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2090624 AT3G19330 "AT3G19330" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 98/351 (27%), Positives = 160/351 (45%)

Query:     9 SLSSRS-NINEEYTEAFRTKSYVEMWSKAQSQLAARTSFNGLSSTSSVSFYVHLSDYLLE 67
             S+SS + N++ E   AF+T SY ++ S+    +   T  +       +     L   +L+
Sbjct:    39 SISSPTFNLSRELAHAFQTPSYHDVRSRVHV-VVDLTQIHHRLIQPDIEL---LLSQVLQ 94

Query:    68 PQQETLMKMIERLH---FHHLLMDYFEASVEAYNVCQLLLRSVHQTRAN-YRRIQRVMKI 123
             P +E + + I  +      +L+  YF+ S +A  +C  L ++VH  R + Y  +  +  I
Sbjct:    95 PNKECVQEAIRHVKQTTLTNLVSTYFQHSEDATRLCLNLYQNVHSARHHLYTPLLDLFNI 154

Query:   124 --SENMH--D---CRATFKHLAAFASSKNPLSIISMVQFRDYHHGKMLLFSSLTSKGKKI 176
                +++   D   C   F       + +NP S      FRD      L FS L  K    
Sbjct:   155 FPGDSLPAIDESLCDLAFDVFLKLDTFENPFSSPESYSFRD----TQLCFSQL--KHNLD 208

Query:   177 RRRAKFNKLLKKVGAYSLVISQTALLIALLVFVLHSMVGIV--AAPGLMVPCLALFQRKL 234
             RR  K    ++ +  +      +  L+A +V V  S V I   A P L+V    L    L
Sbjct:   209 RRLRKSRSRVRLI--HHATAGSSLCLVAAVVAVAASAVVIASHALPILLVVAGPLCSPYL 266

Query:   235 TKLVRRGPKTSLLQKFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCFR 294
                 +R   T++      QL+ A+KG ++L  D DTI R+V RL+  +E+ K + R+   
Sbjct:   267 PHSFKRKELTNI-----CQLNAASKGTFVLNKDLDTIDRLVSRLHTGIEYDKFLIRLGLE 321

Query:   295 SGNS-EILKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQEI 344
              G     ++E++K           QLK+LEDHICL F  +N++R L+L EI
Sbjct:   322 RGRDVHSIQEILKLLRKSHLPLTHQLKDLEDHICLWFTNVNKARSLLLTEI 372

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2094123 AT3G19250 "AT3G19250" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 95/352 (26%), Positives = 155/352 (44%)

Query:     9 SLSSRSNINEEYTEAFRTKSYVEMWSKAQSQLAARTSFNGLSSTSSVSFYVHLSDYLLEP 68
             S++S  N++ E   AF+T SY ++    +S+L        +  T   +  + LS  L  P
Sbjct:    29 SVASTFNLSHELAHAFQTPSYHDI----RSRLLV------IDPTQE-NLELFLSQEL-RP 76

Query:    69 QQETLMKMIERLH-----FHHLLMDYFEASVEAYNVCQLLLRSVHQTRAN-YRRIQRVMK 122
               E++ + +   H       +L+  YF+ S +A   C  L ++VH  R + Y  +  +  
Sbjct:    77 NNESVQEALSLRHAKQTTLTNLVSTYFQHSEDATRFCLNLYQNVHSARCHLYTPLLDLFN 136

Query:   123 I-SENMHD------CRATFKHLAAFASSKNPLSIISMVQFRDYHHGKMLLFSSLTSK-GK 174
             I   + H       C   F       + +NP +      F+D      L F  L  K   
Sbjct:   137 IFPRDSHSAIDESFCNLAFDVFLKLDTFENPFASPESHSFQD----TQLCFYQLADKLDT 192

Query:   175 KIRRRAKFNKLLKKVGAYSLVISQTALLIALLVFVLHSMVGIVAAPGLMVPCLALFQRKL 234
             +IR+     +LL    A S +   TA+++   V    + +   A P ++V    L    L
Sbjct:   193 RIRKSKSRVRLLHHATAGSALCLVTAVVV---VAASAAFIAYHALPTILVVAGPLCTPYL 249

Query:   235 TKLVRRGPKTSLLQKFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCFR 294
                 +   K  L   F  QL+VAAKG + L  D DTI R+V RL+  V++ K + R+   
Sbjct:   250 PHSFK---KKELSNIF--QLNVAAKGTFALNKDLDTIDRLVSRLHTGVKNDKLLIRLGLE 304

Query:   295 SGNSEI-LKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQEIM 345
              G     + E +K+      +   QL+ L DHIC  F  +N+SR L+L+EI+
Sbjct:   305 RGRDVYTIPEFVKQLRKSHVNHTHQLEVLVDHICRWFTNVNKSRSLLLKEIL 356

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2116214 AT4G34320 "AT4G34320" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 57/276 (20%), Positives = 116/276 (42%)

Query:    85 LLMDYFEASVEAYNVCQLLLRSVHQTRANYRRIQRVMKISENM------HDCRATFKHLA 138
             L+ DYFE S++  + C  L + + + R ++  I   ++  E+       +  + T + L 
Sbjct:   102 LVEDYFENSLKTLDFCAALEKGLRRARDSHLLILVALQQFEDESLVQGGNGYKKTLEELK 161

Query:   139 AFASSKNPLSIISMVQFRDYHHGKMLLFSSLTSKGKKIRRRAKFNKLLKKVGAYSLVISQ 198
              F  +++P +      F+  +  +ML+   L  +  K+ ++ K     +K+ +   V + 
Sbjct:   162 NFKDAESPFNEDFFKMFQSVYKQQMLMLEKLQHRKNKLDKKLKCIHTWRKLSSIIFVATF 221

Query:   199 TALLIALLVFVLHSMVGIVAA--PGLMVPCLALFQRKLTKLVRRGPKTSLLQKFAAQLDV 256
               +LI  +V    +   + AA      VP L    + +  L +        QK    +  
Sbjct:   222 ATVLICSVVAAAMAAPPVAAALAAATAVP-LGSMGKWIDSLWKNYENALKGQKEV--ISS 278

Query:   257 AAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCFRSGNSEI-LKEVMKEFHMHESSF 315
                G ++ V D D I  ++ RL  E+      A         +I + ++ K+  +    F
Sbjct:   279 MQAGTFVAVKDLDNIRVLIERLEIEITGMVKSAEFAVEHNAVKIGIDDIKKKLEV----F 334

Query:   316 LEQLKELEDHICLCFLTINRSRRLVLQEIMVHQDKS 351
              + ++EL     LC   I R+R ++LQ I+ H + +
Sbjct:   335 KKNVEELGTQADLCSRDIRRARTVILQRIIKHPNNA 370

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:1005716837 AT5G66675 "AT5G66675" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 0.00020, P = 0.00020
 Identities = 63/285 (22%), Positives = 121/285 (42%)

Query:    85 LLMDYFEASVEAYNVCQLLLRSVHQTRANYRRIQRVMK------------ISENMHDCRA 132
             L+  YF++S++  + C  +   V + R     +Q  +K            +    +    
Sbjct:   121 LVNAYFDSSIKTLDFCNAVDNCVKRARIGQMLLQFALKQFEMESSGSNKSVEPGTNKYAK 180

Query:   133 TFKHLAAFASSKNPLSIISMVQFRDYHHGKMLLFSSLTSKGKKIRRRAKFNKLLKKVGAY 192
             T + L  F +S +P      +     +  +++L   L  + +K+ ++ K  K  KK+   
Sbjct:   181 TLEELNKFKASGDPFDGDFFMLLESVYEQQVMLLEILHKQKRKLDKKLKNIKYWKKI--- 237

Query:   193 SLVISQTALLIALLVFVLHSMVGIVAAPGLMVPCLALFQRKLTKLVRRGPKTSLLQKFAA 252
             S V+  TA  +++L+F +  +   VAAP ++    A     +  + +      L +K+  
Sbjct:   238 SNVVFVTAF-VSVLIFSV--VAAAVAAPPVVTALAAALAVPIGSIGKWC--NHLWKKYET 292

Query:   253 ----QLDVAAK---GVYILVNDFDTISRMVRRLYDEVEHRKDIARMCFRSGNSEILKEVM 305
                 Q D+      G Y+ + D D I   V +L  E+E    + ++ F     E  +EV 
Sbjct:   293 AVKGQKDIVLSMRIGAYVTMKDMDNIRVHVDKLKIEMESM--MQKVDFALKEKE--EEVA 348

Query:   306 KEFHMHESS-----FLEQLKELEDHICLCFLTINRSRRLVLQEIM 345
                 MHE S     F E+++E+ D+   C   I  +R +VL+ I+
Sbjct:   349 VRLSMHEISKKFDVFTERIEEVGDNATKCSKNITLARTIVLRHIL 393


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.134   0.381    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      353       353   0.00079  117 3  11 22  0.44    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  217 KB (2121 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  31.43u 0.08s 31.51t   Elapsed:  00:00:03
  Total cpu time:  31.44u 0.08s 31.52t   Elapsed:  00:00:03
  Start:  Sat May 11 07:23:42 2013   End:  Sat May 11 07:23:45 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6DYE5	U496K_ARATH	No assigned EC number	0.4410	0.9745	0.8820	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00051487 hypothetical protein (393 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	353
pfam05055	336	pfam05055, DUF677, Protein of unknown function (DU	2e-06

>gnl|CDD|218403 pfam05055, DUF677, Protein of unknown function (DUF677)

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 67/340 (19%), Positives = 130/340 (38%), Gaps = 42/340 (12%)

Query: 38  SQLAARTSF--NGL---SSTSSVSF--YVHLSDYLLEPQQETLMKMIE-------RLHFH 83
           S L  RT+F  + L   + T S+S    + ++  LLE  Q+ +  +IE            
Sbjct: 6   SSLQQRTNFLISSLTTGAKTRSLSHDSLMEVTKCLLEMNQDVVKVIIESKEDVWENQDLF 65

Query: 84  HLLMDYFEASVEAYNVCQLLLRSVHQTRANYRRIQRVMKISE----------NMHDCRAT 133
            L+  YFE++ +  + C+ L   V +   +   I+  +   E                 T
Sbjct: 66  SLVNVYFESTKKTLDFCETLENCVERAERSQLLIREAVAQFEKESLDKDVGKKKKKYEKT 125

Query: 134 FKHLAAFASSKNPLSIISMV-QFRDYHHGKMLLFSSLTSKGKKIRRRAKFNKLLKKV--- 189
            + L  F +  +P        QF+  +  ++L+   L    KK+ ++ +  K  + +   
Sbjct: 126 LEELKKFKAMGDPFDGEEFTTQFQSVYKQQVLMLEELRKTKKKLDKKLRNIKTWRIISNV 185

Query: 190 ---GAYSLVISQTALLIALLVFVLHSMVGIVAAP-GLMVPCLALFQRKLTKLVRRGPKTS 245
               A+  V+  + +  A+    +  + G +A P   +   +    +K  + ++R     
Sbjct: 186 VFVAAFVAVLVLSVVAAAMGAPPVVGVAGALAVPLEAVGKWVGSAWKKYEEALKR----- 240

Query: 246 LLQKFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCF-RSGNSEILKEV 304
             QK         KG+ + V D + IS +V RL  E+               N   ++  
Sbjct: 241 --QKEIIS--SMEKGIQVNVKDMENISILVDRLESEITSMLKTVEFAVEHEENEVAVRIA 296

Query: 305 MKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQEI 344
           M E         E+++E+ +    C   I + R +VLQ+I
Sbjct: 297 MDEIKKKVEVLTEKIEEVGEEAAKCSKFIAKGRTVVLQKI 336

This family consists of AT14A like proteins from Arabidopsis thaliana. At14a has a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and localises partly to the plasma membrane. Length = 336

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	353
PF05055	336	DUF677: Protein of unknown function (DUF677); Inte	100.0
PF05633	389	DUF793: Protein of unknown function (DUF793); Inte	99.72
PF03087	231	DUF241: Arabidopsis protein of unknown function; I	96.63
PF05055	336	DUF677: Protein of unknown function (DUF677); Inte	91.28
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	84.75

>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants

Probab=100.00  E-value=1.8e-91  Score=684.40  Aligned_cols=302  Identities=37%  Similarity=0.534  Sum_probs=282.6

Q ss_pred             HHHHhhhhh--cccccCCC-CCCchhhhHHhhhhccCCChHHHHHHHhh-------hhHHHHHHHHHHhhHHHHHHHHHH
Q 038436           34 SKAQSQLAA--RTSFNGLS-STSSVSFYVHLSDYLLEPQQETLMKMIER-------LHFHHLLMDYFEASVEAYNVCQLL  103 (353)
Q Consensus        34 ~~~~~~~~~--~s~~~~~~-~~~s~~s~~~~~~~LLep~qe~v~~il~~-------~~l~~Lv~~YFd~S~~a~~~C~~L  103 (353)
                      +.+|++||+  +|++.|.. +++|+|||++|++||||||||||++||++       |+|++||++|||+|++||+||++|
T Consensus         6 ~~l~~~t~~~i~sl~~~~~~~s~s~~s~~~~t~~Lle~~Qevv~~ile~~~di~~~~~L~~Lv~~YFd~S~~a~~~C~~L   85 (336)
T PF05055_consen    6 SSLQERTNRVISSLATGVETRSLSFDSLKEVTECLLEMNQEVVKVILECKKDIWKNPELFRLVSDYFDSSLEASDFCEAL   85 (336)
T ss_pred             HHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHhCCChHHHHHHHHHHHHhhcChhHHHHHHHHHHhhHHHHHHHHHH
Confidence            348899998  67777764 44579999999999999999999999997       899999999999999999999999


Q ss_pred             HHHHHHHHHhhHHHHHHHHhcccccc----------hHHHHHHHhhhhhcCCCCChh-hHHHHHHHHhchHHHHHHHHhh
Q 038436          104 LRSVHQTRANYRRIQRVMKISENMHD----------CRATFKHLAAFASSKNPLSII-SMVQFRDYHHGKMLLFSSLTSK  172 (353)
Q Consensus       104 ~~~I~~aR~~~~~i~~aL~~~~~~~~----------~~~~~~eL~~F~~~~nPF~~~-~~~~F~~v~~~~~~Ll~~L~~~  172 (353)
                      ++||++||.+|++|+++|++|+.++.          |.+|+++|++|++++|||+.+ ++.+||+||++|++||++|+++
T Consensus        86 ~k~I~~aR~~~~~I~~al~~~~~e~~~~d~g~~~~~~~~tl~eL~~F~~~~NPFs~~~~~~~F~~i~~~~~~Ll~kL~~~  165 (336)
T PF05055_consen   86 LKCIHRARDNYLPIRRALKQFEKESLDTDVGVSQKKYDKTLEELKKFKAAGNPFSDEEFFHQFQSIHDQQSSLLEKLDSR  165 (336)
T ss_pred             HHHHHHHHHHhHHHHHHHHhhhhccccccccccchhHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999977641          789999999999999999998 9999999999999999999999


Q ss_pred             hHHHHHHhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHH------HHHHHhhcccc-cccchHHHHHHHHHhhhcCCcch
Q 038436          173 GKKIRRRAKFNKLLKKVGAYSLVISQTALLIALLVFVLH------SMVGIVAAPGL-MVPCLALFQRKLTKLVRRGPKTS  245 (353)
Q Consensus       173 k~K~~~Klk~~r~~~~vs~~~~vaa~~~v~i~~vv~aah------a~a~l~a~P~~-~~~~~~~l~k~l~~~~~~~~~~~  245 (353)
                      |+|+++|+|++|+|+++|++|||+++++|+|+++|+|+|      +++|++++|++ +|.|++++|++   |++      
T Consensus       166 k~Kl~kklk~~r~~~kvs~v~fvaa~~aV~i~svv~aa~a~~~vv~~aa~~a~P~~~~gkw~~~~~~k---~~~------  236 (336)
T PF05055_consen  166 KKKLRKKLKLVRTWRKVSNVCFVAAFVAVAIASVVAAAHAVPAVVALAAALAAPIGSVGKWCGSLWKK---YEE------  236 (336)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccchHHHhHHHHHHHHH---HHH------
Confidence            999999999999999999999999999999999999886      34555667876 56699999988   776      


Q ss_pred             HHHHHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHHhhHHHHHHHHHcCCchH-HHHHHHHHHhchhhHHHHHHHHHH
Q 038436          246 LLQKFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCFRSGNSEI-LKEVMKEFHMHESSFLEQLKELED  324 (353)
Q Consensus       246 ~l~k~~~qld~aakGtyil~~DldTIs~LV~RL~deIe~~~~~v~fav~~~~~~~-vk~vv~elkk~~~~f~~qleeLee  324 (353)
                      +|+++++|+|+|+|||||+++||||||+||+||+|+|||++++|+||+++++++. +++||+||+|++++|++|||||||
T Consensus       237 al~~~~~~l~~aakGtyI~~~DldTIsrLV~RL~deIE~~~~~v~fave~~~d~~~vk~vv~el~k~~~~f~~qleELee  316 (336)
T PF05055_consen  237 ALKKQKEQLDAAAKGTYILIKDLDTISRLVDRLEDEIEHMKALVDFAVERGEDEEAVKEVVKELKKNVESFTEQLEELEE  316 (336)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999998775 999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 038436          325 HICLCFLTINRSRRLVLQEI  344 (353)
Q Consensus       325 hv~lC~~tInraR~lVl~~I  344 (353)
                      |||+||+||||||++|||+|
T Consensus       317 hv~lC~~tInrAR~lVlq~I  336 (336)
T PF05055_consen  317 HVYLCFKTINRARTLVLQEI  336 (336)
T ss_pred             HHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999998

This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].

>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development

Probab=99.72  E-value=1.2e-16  Score=159.09  Aligned_cols=269  Identities=16%  Similarity=0.180  Sum_probs=194.2

Q ss_pred             chhhhHHhhhhccCCChHHHHHHHhh-------hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccc
Q 038436           54 SVSFYVHLSDYLLEPQQETLMKMIER-------LHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYRRIQRVMKISEN  126 (353)
Q Consensus        54 s~~s~~~~~~~LLep~qe~v~~il~~-------~~l~~Lv~~YFd~S~~a~~~C~~L~~~I~~aR~~~~~i~~aL~~~~~  126 (353)
                      |++=.+.+.+.++.=..|.=..|.+.       |.+++||.+|||.|.|++|+|+++...|.+.|..|+.++-|++.++.
T Consensus        65 SL~W~~~~ld~~l~~~~efr~li~~~~~~~~s~~~~dk~v~eylD~sVKlLDvCNA~~~gi~~lr~~~~ll~~al~~L~~  144 (389)
T PF05633_consen   65 SLSWMRKALDSFLCCHEEFRALITNLRDLPLSKPPDDKWVDEYLDRSVKLLDVCNAIRDGISQLRQWQLLLQIALHALDS  144 (389)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhcccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            56666777777776555544333332       56899999999999999999999999999999999999999999976


Q ss_pred             ccc-----hHHHHHHHhhhhhcC--C-----------------------CCCh----hhHHHHHH------HHhchHHHH
Q 038436          127 MHD-----CRATFKHLAAFASSK--N-----------------------PLSI----ISMVQFRD------YHHGKMLLF  166 (353)
Q Consensus       127 ~~~-----~~~~~~eL~~F~~~~--n-----------------------PF~~----~~~~~F~~------v~~~~~~Ll  166 (353)
                      ..+     +.++...|.++..+.  +                       +-+.    .....|++      -.=.++.+|
T Consensus       145 ~~~~~~~~~rRAr~aL~dl~~~~~~~~~~~~~~~~~rnrs~~r~~~~~~~~~~s~~~~~~~~~rsls~~vsr~wsa~~~L  224 (389)
T PF05633_consen  145 SRPLGEGQLRRARKALSDLKIAMLDDKDSGSSGGSHRNRSFGRSNSSGRRSSSSSGSRSAGHFRSLSWSVSRNWSAARQL  224 (389)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHhcccccCcccccccccccccccCCCCCCCCccccCCcccchhhhhhhhhhhhhHHHH
Confidence            522     666666666654211  0                       0000    11223432      223455555


Q ss_pred             HHHHhhhHHHHHHhhhhHHHh-----hhhhhhHHHHHHHHHHHHHHHHHH-HH-HHHhhcccccccchHHHHHHHHHhhh
Q 038436          167 SSLTSKGKKIRRRAKFNKLLK-----KVGAYSLVISQTALLIALLVFVLH-SM-VGIVAAPGLMVPCLALFQRKLTKLVR  239 (353)
Q Consensus       167 ~~L~~~k~K~~~Klk~~r~~~-----~vs~~~~vaa~~~v~i~~vv~aah-a~-a~l~a~P~~~~~~~~~l~k~l~~~~~  239 (353)
                      +.       +...|-.+|.-.     .+-..+|+..+++|+||++++||- .- -|+.+     -.+  ..-+.   |.|
T Consensus       225 q~-------m~~nL~~Pk~~esak~~gL~~A~Y~m~~vtvFV~~vlVAA~pc~~rgL~~-----~l~--~vP~~---~~W  287 (389)
T PF05633_consen  225 QA-------MGENLVLPKGKESAKGRGLLRAMYGMKSVTVFVCWVLVAAFPCQDRGLQV-----HLS--AVPRQ---FSW  287 (389)
T ss_pred             HH-------HHhcCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHeeecCCccccC-----CCC--CCccc---ccc
Confidence            55       666666655443     345789999999999999988763 00 01111     011  00123   445


Q ss_pred             cCCcchHHHHHHHHHHHhh-hhhhhhhcccccHHHHHHHHHHHHHhhHHHHHHHHHcCCchHHHHHHHHHHhchhhHHHH
Q 038436          240 RGPKTSLLQKFAAQLDVAA-KGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCFRSGNSEILKEVMKEFHMHESSFLEQ  318 (353)
Q Consensus       240 ~~~~~~~l~k~~~qld~aa-kGtyil~~DldTIs~LV~RL~deIe~~~~~v~fav~~~~~~~vk~vv~elkk~~~~f~~q  318 (353)
                      +.+-...++++.+.++... ||...+.++|+.|.+.|++|++-++.    ++|.++.++.+.+++.++||.+..+.+.+.
T Consensus       288 A~s~~~LQ~rI~eEikkk~~kgs~gLLkEl~~ve~~vr~L~el~d~----~~~p~~~e~~~ev~~~V~EL~~~~~~L~~G  363 (389)
T PF05633_consen  288 APSFISLQERINEEIKKKERKGSCGLLKELQQVEASVRELHELIDS----FQFPLEEEKEEEVREAVEELARVCEALSQG  363 (389)
T ss_pred             chHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHHHHHh----ccCCcchhHHHHHHHHHHHHHHHHHHHHcc
Confidence            4444556778999999876 77999999999999999999977774    467777776667999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038436          319 LKELEDHICLCFLTINRSRRLVLQE  343 (353)
Q Consensus       319 leeLeehv~lC~~tInraR~lVl~~  343 (353)
                      |+.||.+|+.-|+.|-++|+-+|.-
T Consensus       364 LdpLerqVre~Fh~IV~sR~elLd~  388 (389)
T PF05633_consen  364 LDPLERQVREVFHRIVRSRTELLDS  388 (389)
T ss_pred             cHHHHHHHHHHHHHHHHhhHHHHhc
Confidence            9999999999999999999998863

Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].

>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function

Probab=96.63  E-value=0.64  Score=43.96  Aligned_cols=49  Identities=8%  Similarity=0.291  Sum_probs=42.7

Q ss_pred             HHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcc
Q 038436           76 MIERLHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYRRIQRVMKISE  125 (353)
Q Consensus        76 il~~~~l~~Lv~~YFd~S~~a~~~C~~L~~~I~~aR~~~~~i~~aL~~~~  125 (353)
                      .|.++. ..+|++..|.|..-+|+|+.-...+-+.+.+.+-+|.+|..=+
T Consensus        25 al~~~~-~k~ve~lLd~sL~LLD~c~~~rd~ll~lKe~v~eLqsalRRr~   73 (231)
T PF03087_consen   25 ALSHHQ-EKWVEELLDGSLRLLDACGTFRDALLQLKEHVQELQSALRRRD   73 (231)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            344444 7899999999999999999999999999999999998887754

>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants

Probab=91.28  E-value=18  Score=36.42  Aligned_cols=154  Identities=10%  Similarity=0.092  Sum_probs=72.3

Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccc-cchHHHHHHHhhhhhcCCCCC---------h-
Q 038436           81 HFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYRRIQRVMKISENM-HDCRATFKHLAAFASSKNPLS---------I-  149 (353)
Q Consensus        81 ~l~~Lv~~YFd~S~~a~~~C~~L~~~I~~aR~~~~~i~~aL~~~~~~-~~~~~~~~eL~~F~~~~nPF~---------~-  149 (353)
                      ++=..+.+|=++=.+-.++-..+....+....-...=..++++++.- ..|..+...|+.|..-..|-+         . 
T Consensus        46 evv~~ile~~~di~~~~~L~~Lv~~YFd~S~~a~~~C~~L~k~I~~aR~~~~~I~~al~~~~~e~~~~d~g~~~~~~~~t  125 (336)
T PF05055_consen   46 EVVKVILECKKDIWKNPELFRLVSDYFDSSLEASDFCEALLKCIHRARDNYLPIRRALKQFEKESLDTDVGVSQKKYDKT  125 (336)
T ss_pred             HHHHHHHHHHHHhhcChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhccccccccccchhHHHH
Confidence            44444444433333445555555555555544443333333443221 237778888888865543321         0 


Q ss_pred             -hhHHHHH--------H-HHhchHHHHHHHHhhhHHHHHHh-hhhHHHhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHh
Q 038436          150 -ISMVQFR--------D-YHHGKMLLFSSLTSKGKKIRRRA-KFNKLLKKVGAYSLVISQTAL-LIALLVFVLHSMVGIV  217 (353)
Q Consensus       150 -~~~~~F~--------~-v~~~~~~Ll~~L~~~k~K~~~Kl-k~~r~~~~vs~~~~vaa~~~v-~i~~vv~aaha~a~l~  217 (353)
                       .-...|.        . ...++.++-++-.+..+|++.+- |+-|..|.+...--+++..-| +.++|++++.++++.+
T Consensus       126 l~eL~~F~~~~NPFs~~~~~~~F~~i~~~~~~Ll~kL~~~k~Kl~kklk~~r~~~kvs~v~fvaa~~aV~i~svv~aa~a  205 (336)
T PF05055_consen  126 LEELKKFKAAGNPFSDEEFFHQFQSIHDQQSSLLEKLDSRKKKLRKKLKLVRTWRKVSNVCFVAAFVAVAIASVVAAAHA  205 (336)
T ss_pred             HHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence             1112221        1 45666666666666666666433 233344444333333222222 2223334444445442


Q ss_pred             hc-----ccccccchHHHHHHH
Q 038436          218 AA-----PGLMVPCLALFQRKL  234 (353)
Q Consensus       218 a~-----P~~~~~~~~~l~k~l  234 (353)
                      +.     |+.+++|+++++||+
T Consensus       206 ~~~vv~~aa~~a~P~~~~gkw~  227 (336)
T PF05055_consen  206 VPAVVALAAALAAPIGSVGKWC  227 (336)
T ss_pred             hhHHHHHHHHHccchHHHhHHH
Confidence            22     223447888888883

This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=84.75  E-value=29  Score=31.12  Aligned_cols=20  Identities=20%  Similarity=0.122  Sum_probs=8.9

Q ss_pred             hHHHhhhhhhhHHHHHHHHH
Q 038436          183 NKLLKKVGAYSLVISQTALL  202 (353)
Q Consensus       183 ~r~~~~vs~~~~vaa~~~v~  202 (353)
                      +.....+.+++++++.++.+
T Consensus         7 ~~i~~iilgilli~~gI~~L   26 (191)
T PF04156_consen    7 ISIILIILGILLIASGIAAL   26 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33444444555444444443

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	353
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 51/301 (16%), Positives = 100/301 (33%), Gaps = 72/301 (23%)

Query: 81  HFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYRRIQRVM--KISENMHDCRATFKHLA 138
           H HH  MD FE     Y                Y+ I  V      +N  DC+       
Sbjct: 1   HHHHHHMD-FETGEHQY---------------QYKDILSVFEDAFVDNF-DCKDVQDMPK 43

Query: 139 AFASSKNPLSIISMVQFRDYHHGKMLLFSSLTSKGKKIRRRAKFNKLLKK-----VGAYS 193
           +  S +    I  ++  +D   G + LF +L SK +++ ++    ++L+      +    
Sbjct: 44  SILSKEE---IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF-VEEVLRINYKFLMSPIK 99

Query: 194 LVISQTALLIALLVFVLHSMVGIVAA-PGLMVPCLALF---QRKLTKLVRRGP------- 242
               Q +++  + +     +           V  L  +   ++ L +L R          
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-RPAKNVLIDGV 158

Query: 243 ----KTSLLQKFAAQLDVAAK---GVYIL----VNDFDTISRMVRRLYDEVEHRKDIARM 291
               KT +         V  K    ++ L     N  +T+  M+++L  +++   +    
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID--PNWTSR 216

Query: 292 CFRSGNSEILKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQEIMVHQDKS 351
              S N ++    ++     E   L + K  E+  CL          LVL  +   Q+  
Sbjct: 217 SDHSSNIKLRIHSIQA----ELRRLLKSKPYEN--CL----------LVLLNV---QNAK 257

Query: 352 C 352
            
Sbjct: 258 A 258

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00