Citrus Sinensis ID: 038439

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA
Secondary Structure (PSIPRED)
cccccEEEEEcccccEEEcccccccEEEEEEcccccccEEEccccccccccccccEEEEEEcccccEEEccccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEEEcccccccccccccccccEEEEEEcccccEEEEEcccccEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEcccccEEEEEEccccEEEEEEcccccccEEEEcccccccccccccEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEcccccccccccccccEEEEEEEcccccEEEEEccccEEEEEEEcc
Coil and Loop (DISEMBL)
MAYGKVKVWCTRQEASVLNIDMKANIccvkynpgssnyiakyqstapcvhghkKAVSYVKFLsndelasastdstlrlwdvkenlpvrtfrghmneknfvgLTVNSEYIacgsesnevYVYHKEiskpvtwhrfsspdmddtdedagSYFISAvcwksdsptmltansqGTIKVLVLAA
Flexible Loop (DISEMBL)
maygkvkvwcTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDELasastdstlrlwdVKENlpvrtfrghmneknfvgLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSptmltansqgtIKVLVLAA
Low Complexity Region (SEG)
MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA
Disordered region (IsUnstruct)
***GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF***********AGSYFISAVCWKSDSPTMLTA***GTIKVLV***
Disordered Region (DISOPRED)
MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDM**TDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA
Disordered Region (DISEMBL)
MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA
Disordered Region (DISPRO)
*AYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
P43254	675	E3 ubiquitin-protein liga	yes	no	0.977	0.259	0.809	2e-85
P93471	672	E3 ubiquitin-protein liga	N/A	no	0.977	0.260	0.788	1e-82
Q8NHY2	731	E3 ubiquitin-protein liga	yes	no	0.966	0.236	0.469	1e-41
Q9R1A8	733	E3 ubiquitin-protein liga	yes	no	0.966	0.236	0.469	1e-41
Q9T014	1036	Protein SPA1-RELATED 2 OS	no	no	0.960	0.166	0.423	1e-35
Q9LJR3	845	Protein SPA1-RELATED 3 OS	no	no	0.960	0.203	0.424	2e-35
Q94BM7	794	Protein SPA1-RELATED 4 OS	no	no	0.972	0.219	0.420	2e-35
Q9SYX2	1029	Protein SUPPRESSOR OF PHY	no	no	0.960	0.167	0.392	9e-32
Q9FFA7	368	WD repeat-containing prot	no	no	0.843	0.410	0.341	3e-24
Q9LTJ6	385	WD repeat-containing prot	no	no	0.899	0.418	0.287	2e-16

>sp|P43254|COP1_ARATH E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2

 Score =  314 bits (804), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 153/189 (80%), Positives = 166/189 (87%), Gaps = 14/189 (7%)

Query: 5   KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIA-----------KYQSTAPCVH--- 50
           KVKVWCTRQEASV+NIDMKANICCVKYNPGSSNYIA             ++ +  +H   
Sbjct: 487 KVKVWCTRQEASVINIDMKANICCVKYNPGSSNYIAVGSADHHIHYYDLRNISQPLHVFS 546

Query: 51  GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIA 110
           GHKKAVSYVKFLSN+ELASASTDSTLRLWDVK+NLPVRTFRGH NEKNFVGLTVNSEY+A
Sbjct: 547 GHKKAVSYVKFLSNNELASASTDSTLRLWDVKDNLPVRTFRGHTNEKNFVGLTVNSEYLA 606

Query: 111 CGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG 170
           CGSE+NEVYVYHKEI++PVT HRF SPDMDD +E+AGSYFISAVCWKSDSPTMLTANSQG
Sbjct: 607 CGSETNEVYVYHKEITRPVTSHRFGSPDMDDAEEEAGSYFISAVCWKSDSPTMLTANSQG 666

Query: 171 TIKVLVLAA 179
           TIKVLVLAA
Sbjct: 667 TIKVLVLAA 675

E3 ubiquitin-protein ligase that acts as a repressor of photomorphogenesis and as an activator of etiolation in darkness. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Represses photomorphogenesis in darkness by mediating ubiquitination and subsequent proteasomal degradation of light-induced transcription factors such as HY5, HYH and LAF1. Down-regulates MYB21, probably via ubiquitination process. Light stimuli abrogate the repression of photomorphogenesis, possibly due to its localization to the cytoplasm. Could play a role in switching between skotomorphogenetic and photomorphogenetic pathways.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|P93471|COP1_PEA E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1

 Score =  305 bits (780), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 149/189 (78%), Positives = 162/189 (85%), Gaps = 14/189 (7%)

Query: 5   KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIA-----------KYQSTAPCVH--- 50
           KVKVWCT QEASVLNIDMKANICCVKYNPGS NYIA             ++ +  VH   
Sbjct: 484 KVKVWCTNQEASVLNIDMKANICCVKYNPGSGNYIAVGSADHHIHYYDLRNISRPVHVFT 543

Query: 51  GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIA 110
           GHKKAVSYVKFLSNDELASASTDSTLRLWDVK+NLPVRTFRGH NEKNFVGLTV SEYIA
Sbjct: 544 GHKKAVSYVKFLSNDELASASTDSTLRLWDVKQNLPVRTFRGHANEKNFVGLTVRSEYIA 603

Query: 111 CGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG 170
           CGSE+NEV+VYHKEISKP+TWHRF + DM+D +++AGSYFISAVCWKSD PT+LTANSQG
Sbjct: 604 CGSETNEVFVYHKEISKPLTWHRFGTLDMEDAEDEAGSYFISAVCWKSDRPTILTANSQG 663

Query: 171 TIKVLVLAA 179
           TIKVLVLAA
Sbjct: 664 TIKVLVLAA 672

E3 ubiquitin-protein ligase that acts as a repressor of photomorphogenesis and as an activator of etiolation in darkness. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Represses photomorphogenesis in darkness by mediating ubiquitination and subsequent proteasomal degradation of light-induced transcription factors. Light stimuli abrogate the repression of photomorphogenesis, possibly due to its localization to the cytoplasm. Could play a role in switching between skotomorphogenetic and photomorphogenetic pathways.

Pisum sativum (taxid: 3888)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8NHY2|RFWD2_HUMAN E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1 SV=1

 Score =  169 bits (427), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 92/196 (46%), Positives = 128/196 (65%), Gaps = 23/196 (11%)

Query: 4   GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPCVH------------- 50
            KVK+W T  + SV +I+ KAN+CCVK++P SS Y   +     CVH             
Sbjct: 536 AKVKLWSTNLDNSVASIEAKANVCCVKFSP-SSRYHLAFGCADHCVHYYDLRNTKQPIMV 594

Query: 51  --GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEY 108
             GH+KAVSY KF+S +E+ SASTDS L+LW+V +   +R+F+GH+NEKNFVGL  N +Y
Sbjct: 595 FKGHRKAVSYAKFVSGEEIVSASTDSQLKLWNVGKPYCLRSFKGHINEKNFVGLASNGDY 654

Query: 109 IACGSESNEVYVYHKEISKPVTWHRFSSPD--MD-DTDEDAGSYFISAVCWKS----DSP 161
           IACGSE+N +Y+Y+K +SK +   +F +    +D D  ED  + F+SAVCW++    +S 
Sbjct: 655 IACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALPDGESN 714

Query: 162 TMLTANSQGTIKVLVL 177
            ++ ANSQGTIKVL L
Sbjct: 715 VLIAANSQGTIKVLEL 730

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Involved in JUN ubiquitination and degradation. Directly involved in p53 (TP53) ubiquitination and degradation, thereby abolishing p53-dependent transcription and apoptosis. Ubiquitinates p53 independently of MDM2 or RCHY1. Probably mediates E3 ubiquitin ligase activity by functioning as the essential RING domain subunit of larger E3 complexes. In contrast, it does not constitute the catalytic RING subunit in the DCX DET1-COP1 complex that negatively regulates JUN, the ubiquitin ligase activity being mediated by RBX1.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9R1A8|RFWD2_MOUSE E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1 SV=2

 Score =  169 bits (427), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 92/196 (46%), Positives = 128/196 (65%), Gaps = 23/196 (11%)

Query: 4   GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPCVH------------- 50
            KVK+W T  + SV +I+ KAN+CCVK++P SS Y   +     CVH             
Sbjct: 538 AKVKLWSTNLDNSVASIEAKANVCCVKFSP-SSRYHLAFGCADHCVHYYDLRNTKQPIMV 596

Query: 51  --GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEY 108
             GH+KAVSY KF+S +E+ SASTDS L+LW+V +   +R+F+GH+NEKNFVGL  N +Y
Sbjct: 597 FKGHRKAVSYAKFVSGEEIVSASTDSQLKLWNVGKPYCLRSFKGHINEKNFVGLASNGDY 656

Query: 109 IACGSESNEVYVYHKEISKPVTWHRFSSPD--MD-DTDEDAGSYFISAVCWKS----DSP 161
           IACGSE+N +Y+Y+K +SK +   +F +    +D D  ED  + F+SAVCW++    +S 
Sbjct: 657 IACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALSDGESN 716

Query: 162 TMLTANSQGTIKVLVL 177
            ++ ANSQGTIKVL L
Sbjct: 717 VLIAANSQGTIKVLEL 732

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Involved in JUN ubiquitination and degradation. Directly involved in p53 (TP53) ubiquitination and degradation, thereby abolishing p53-dependent transcription and apoptosis. Ubiquitinates p53 independently of MDM2 or RCHY1. Probably mediates E3 ubiquitin ligase activity by functioning as the essential RING domain subunit of larger E3 complexes. In contrast, it does not constitute the catalytic RING subunit in the DCX DET1-COP1 complex that negatively regulates JUN, the ubiquitin ligase activity being mediated by RBX1.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9T014|SPA2_ARATH Protein SPA1-RELATED 2 OS=Arabidopsis thaliana GN=SPA2 PE=1 SV=2

 Score =  149 bits (375), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/196 (42%), Positives = 118/196 (60%), Gaps = 24/196 (12%)

Query: 6    VKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIA-------------KYQSTAPCV-HG 51
            VK+W   +   +  I   AN+CCV+++P SS+ +A             +   T  C+  G
Sbjct: 840  VKLWNINERNCLGTIRNIANVCCVQFSPQSSHLLAFGSSDFRTYCYDLRNLRTPWCILSG 899

Query: 52   HKKAVSYVKFLSNDELASASTDSTLRLWDVKE--------NLPVRTFRGHMNEKNFVGLT 103
            H KAVSY KFL N+ L +ASTD+TL+LWD+K+        N    TF GH NEKNFVGL+
Sbjct: 900  HNKAVSYAKFLDNETLVTASTDNTLKLWDLKKTTHGGLSTNACSLTFGGHTNEKNFVGLS 959

Query: 104  VNSEYIACGSESNEVYVYHKEISKPVTWHRFSS--PDMDDTDEDAGSYFISAVCWKSDSP 161
             +  YIACGSE+NEVY YH+ +  P+T ++F S  P      E+  + F+S+VCW+  S 
Sbjct: 960  TSDGYIACGSETNEVYAYHRSLPMPITSYKFGSIDPISGKEIEEDNNLFVSSVCWRKRSN 1019

Query: 162  TMLTANSQGTIKVLVL 177
             +++A+S G+IKVL L
Sbjct: 1020 MVVSASSNGSIKVLQL 1035

Involved in suppression of photomorphogenesis in dark-grown seedlings. Probably part of the COP1/SPA E3 ubiquitin-protein ligase complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJR3|SPA3_ARATH Protein SPA1-RELATED 3 OS=Arabidopsis thaliana GN=SPA3 PE=1 SV=1

 Score =  148 bits (374), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/193 (42%), Positives = 112/193 (58%), Gaps = 21/193 (10%)

Query: 4   GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIA---------KYQSTAPCVH---- 50
           G VK+W   Q  S+  I  KAN+CCV++   S   +A          Y    P +     
Sbjct: 649 GTVKLWSINQGVSIGTIKTKANVCCVQFPSDSGRSLAFGSADHKVYYYDLRNPKIPLCTM 708

Query: 51  -GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENL------PVRTFRGHMNEKNFVGLT 103
            GH K VSYVKF+ +  L S+STD+TL+LWD+  +       P+ +F GH N KNFVGL+
Sbjct: 709 IGHSKTVSYVKFVDSSTLVSSSTDNTLKLWDLSMSASGINESPLHSFTGHTNLKNFVGLS 768

Query: 104 VNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPD-MDDTDEDAGSYFISAVCWKSDSPT 162
           V+  YIA GSE+NEV+VYHK    PV  + F++ D M   + D  S FIS++CW+  S T
Sbjct: 769 VSDGYIATGSETNEVFVYHKAFPMPVMSYMFNNTDSMSGLEVDDASQFISSICWRGQSST 828

Query: 163 MLTANSQGTIKVL 175
           ++ ANS G IK+L
Sbjct: 829 LVAANSNGNIKIL 841

Repressor of photomorphogenesis in the light. Probably part of the COP1/SPA E3 ubiquitin-protein ligase complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94BM7|SPA4_ARATH Protein SPA1-RELATED 4 OS=Arabidopsis thaliana GN=SPA4 PE=1 SV=1

 Score =  147 bits (372), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/195 (42%), Positives = 118/195 (60%), Gaps = 21/195 (10%)

Query: 4   GKVKVWCTRQEASVLNIDMKANICCVKYNP--------GSSNY-IAKYQSTAP-----CV 49
           G VK+W   Q  S+  I  KANICCV++          GS+++ +  Y    P      +
Sbjct: 599 GSVKLWSINQGVSIGTIKTKANICCVQFPSETGRSLAFGSADHKVYYYDLRNPKLPLCTM 658

Query: 50  HGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENL------PVRTFRGHMNEKNFVGLT 103
            GH K VSYV+F+ +  L S+STD+TL+LWD+  ++      P+ +F GH N KNFVGL+
Sbjct: 659 IGHHKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLS 718

Query: 104 VNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPD-MDDTDEDAGSYFISAVCWKSDSPT 162
           V+  YIA GSE+NEV+VYHK    PV  ++F + D + + + D  S FIS+VCW+  S T
Sbjct: 719 VSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSELEVDDASQFISSVCWRGQSST 778

Query: 163 MLTANSQGTIKVLVL 177
           ++ ANS G IK+L +
Sbjct: 779 LVAANSTGNIKILEM 793

Repressor of photomorphogenesis in the light. Probably part of the COP1/SPA E3 ubiquitin-protein ligase complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYX2|SPA1_ARATH Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis thaliana GN=SPA1 PE=1 SV=1

 Score =  135 bits (341), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 77/196 (39%), Positives = 119/196 (60%), Gaps = 24/196 (12%)

Query: 6    VKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIA-------------KYQSTAPC-VHG 51
            VK+W   ++ S+  I   AN+CCV+++  S++ +A             +Y  T  C + G
Sbjct: 833  VKLWSINEKRSLGTIWSPANVCCVQFSSYSNHLLAFGSADYKVYCYDLRYVKTPWCTLAG 892

Query: 52   HKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPV--------RTFRGHMNEKNFVGLT 103
            H+KAVSYVKF+ ++ + SASTD++L+LW++ +             T++GH N+KNFVGL+
Sbjct: 893  HEKAVSYVKFMDSETIVSASTDNSLKLWNLNKTNSSGLSPGACSLTYKGHTNQKNFVGLS 952

Query: 104  VNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE--DAGSYFISAVCWKSDSP 161
            V   YIACGSE+NEVY Y+K +  P+T ++F S D    +E  D    F+S+VCW+  S 
Sbjct: 953  VLDGYIACGSETNEVYSYYKSLPMPMTSYKFGSVDPISGNEYFDDNGQFVSSVCWRKKSN 1012

Query: 162  TMLTANSQGTIKVLVL 177
             ++ ANS G +K+L L
Sbjct: 1013 MLVAANSTGNMKLLKL 1028

Controls normal photoperiodic flowering and regulates circadian rhythms. Required for suppression of photomorphogenesis in dark-grown seedlings and for normal elongation growth of adult plants. Integral component of the COP1/SPA E3 ubiquitin-protein ligase complex. Involved in HY5, HFR1, LAF1 and CO degradation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: -

EC: .

EC: -

>sp|Q9FFA7|RUP2_ARATH WD repeat-containing protein RUP2 OS=Arabidopsis thaliana GN=RUP2 PE=1 SV=1

 Score =  111 bits (277), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 90/173 (52%), Gaps = 22/173 (12%)

Query: 23  KANICCVKYNPGSSNYIA--------------KYQSTAPCVHGHKKAVSYVKFLSNDELA 68
           ++ +CCV+++P     +A              K    A  + GH K VSYV+FL    + 
Sbjct: 194 RSAVCCVEFDPSGGPAVAVGCADRKGYVYDIRKLVDPALTLQGHTKTVSYVRFLDGGTVV 253

Query: 69  SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTV--NSEYIACGSESNEVYVYHKEIS 126
           +A TD  L+LW V++   +RT+ GH+N +NFVGL+V  N     CGSE+N V+VY +   
Sbjct: 254 TAGTDGCLKLWSVEDGRVIRTYEGHVNNRNFVGLSVWRNGALFGCGSENNRVFVYDRRWG 313

Query: 127 KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKS---DSPTMLTANSQGTIKVLV 176
           KPV    F    M+   +     F+S+VCW+    D  T++   S G ++V V
Sbjct: 314 KPVWVDGFEPVGMNSGSD---KRFVSSVCWRQSGVDQCTLVAGGSDGVLQVYV 363

Functions in association with RUP1 as repressor of UV-B-induced photomorphogenesis mediated by UVR8 and HY5. Play a crucial negative feedback regulatory role downstream of UVR8-COP1 to inhibit UVR8 function, balance UV-B-specific responses and ensure normal plant growth. Is involved in the regulation of photoperiodic flowering and vegetative development. May act as negative regulator of photoperiodic flowering by suppressing flowering through the action of CONSTANS (CO) and FLOWERING LOCUS T (FT).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTJ6|RUP1_ARATH WD repeat-containing protein RUP1 OS=Arabidopsis thaliana GN=RUP1 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 97/202 (48%), Gaps = 41/202 (20%)

Query: 4   GKVKVWCTRQEASV---LNIDMKANICCVKYNPGSSNYIA--------------KYQSTA 46
           G V++W  R   ++   +     A IC V+++P   + IA              +     
Sbjct: 190 GTVQMWDPRNGGTLEETVRPGGGAAICSVEFDPFGGSSIAVGCADRNAYVYDIRRLVDPL 249

Query: 47  PCVHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLP-VRTFRGHMNEKNFVGLTV- 104
             + GH K V+Y +F+ +  + + STD +L+ WD+      VRT+RGH+N +NFVGL+V 
Sbjct: 250 IVLDGHTKTVTYARFMDSHTIVTGSTDGSLKQWDIDNGRRVVRTYRGHVNSRNFVGLSVW 309

Query: 105 -NSEYIACGSESNEVYVYHKEISKPVTW-------HRFSSPDMDDTDEDAGSYFISAVCW 156
            +   +  GSE+N+V+VY K   +PV W       +RF S             F+S+VC 
Sbjct: 310 RHGGLVVSGSENNQVFVYDKRWEEPV-WVCGLGHTNRFGSD----------RRFVSSVCL 358

Query: 157 KS---DSPTMLTANSQGTIKVL 175
           +    D  T++   S G +++ 
Sbjct: 359 RQVDEDWCTLVAGGSDGALEIF 380

Functions in association with RUP2 as repressor of UV-B-induced photomorphogenesis mediated by UVR8 and HY5. Play a crucial negative feedback regulatory role downstream of UVR8-COP1 to inhibit UVR8 function, balance UV-B-specific responses and ensure normal plant growth. Is involved in the regulation of photoperiodic flowering and vegetative development.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
255587080	677	ubiquitin ligase protein cop1, putative	0.977	0.258	0.814	2e-84
15225760	675	E3 ubiquitin-protein ligase COP1 [Arabid	0.977	0.259	0.809	1e-83
224131692	672	predicted protein [Populus trichocarpa]	0.977	0.260	0.814	1e-83
402685	675	regulatory protein [Arabidopsis thaliana	0.977	0.259	0.809	1e-83
357493175	761	E3 ubiquitin-protein ligase COP1 [Medica	0.977	0.229	0.804	6e-83
15029364	662	photoregulatory zinc-finger protein COP1	0.977	0.264	0.804	1e-82
297823085	675	hypothetical protein ARALYDRAFT_902362 [	0.977	0.259	0.798	1e-82
8574407	970	COP1 regulatory protein [Pisum sativum]	0.977	0.180	0.788	8e-82
332656170	677	constitutively photomorphogenic 1 [Brass	0.977	0.258	0.798	1e-81
356501265	669	PREDICTED: E3 ubiquitin-protein ligase C	0.977	0.261	0.783	5e-81

>gi|255587080|ref|XP_002534127.1| ubiquitin ligase protein cop1, putative [Ricinus communis] gi|223525812|gb|EEF28255.1| ubiquitin ligase protein cop1, putative [Ricinus communis]

 Score =  316 bits (810), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 154/189 (81%), Positives = 164/189 (86%), Gaps = 14/189 (7%)

Query: 5   KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIA-----------KYQSTAPCVH--- 50
           KVKVWCT QEASVLNIDMKANICCVKYNPGSSNYIA             ++ +  +H   
Sbjct: 489 KVKVWCTNQEASVLNIDMKANICCVKYNPGSSNYIAVGSADHHIHYYDLRNVSHPLHVFS 548

Query: 51  GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIA 110
           GH+KAVSYVKFLSN ELASASTDSTLRLWDVKENLPVRTFRGH NEKNFVGL+VN +YIA
Sbjct: 549 GHRKAVSYVKFLSNSELASASTDSTLRLWDVKENLPVRTFRGHTNEKNFVGLSVNRDYIA 608

Query: 111 CGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG 170
           CGSE+NEVYVYHKEIS+PVTWHRF SP+MDD DEDAGSYFISAVCWKSDSPTMLTANSQG
Sbjct: 609 CGSETNEVYVYHKEISRPVTWHRFGSPEMDDADEDAGSYFISAVCWKSDSPTMLTANSQG 668

Query: 171 TIKVLVLAA 179
           TIKVLVLAA
Sbjct: 669 TIKVLVLAA 677

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225760|ref|NP_180854.1| E3 ubiquitin-protein ligase COP1 [Arabidopsis thaliana] gi|20141387|sp|P43254.2|COP1_ARATH RecName: Full=E3 ubiquitin-protein ligase COP1; AltName: Full=Constitutive photomorphogenesis protein 1 gi|2702280|gb|AAB91983.1| COP1 regulatory protein [Arabidopsis thaliana] gi|95147316|gb|ABF57293.1| At2g32950 [Arabidopsis thaliana] gi|330253672|gb|AEC08766.1| E3 ubiquitin-protein ligase COP1 [Arabidopsis thaliana]

 Score =  314 bits (804), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 153/189 (80%), Positives = 166/189 (87%), Gaps = 14/189 (7%)

Query: 5   KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIA-----------KYQSTAPCVH--- 50
           KVKVWCTRQEASV+NIDMKANICCVKYNPGSSNYIA             ++ +  +H   
Sbjct: 487 KVKVWCTRQEASVINIDMKANICCVKYNPGSSNYIAVGSADHHIHYYDLRNISQPLHVFS 546

Query: 51  GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIA 110
           GHKKAVSYVKFLSN+ELASASTDSTLRLWDVK+NLPVRTFRGH NEKNFVGLTVNSEY+A
Sbjct: 547 GHKKAVSYVKFLSNNELASASTDSTLRLWDVKDNLPVRTFRGHTNEKNFVGLTVNSEYLA 606

Query: 111 CGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG 170
           CGSE+NEVYVYHKEI++PVT HRF SPDMDD +E+AGSYFISAVCWKSDSPTMLTANSQG
Sbjct: 607 CGSETNEVYVYHKEITRPVTSHRFGSPDMDDAEEEAGSYFISAVCWKSDSPTMLTANSQG 666

Query: 171 TIKVLVLAA 179
           TIKVLVLAA
Sbjct: 667 TIKVLVLAA 675

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131692|ref|XP_002321154.1| predicted protein [Populus trichocarpa] gi|222861927|gb|EEE99469.1| predicted protein [Populus trichocarpa]

 Score =  313 bits (803), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 154/189 (81%), Positives = 163/189 (86%), Gaps = 14/189 (7%)

Query: 5   KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQS------------TAP--CVH 50
           KVKVWCT+QEASVLNIDMKANICCVKYNPGSSNYIA   +            T P     
Sbjct: 484 KVKVWCTKQEASVLNIDMKANICCVKYNPGSSNYIAVGSADHQIHYYDLRNVTNPLYVFS 543

Query: 51  GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIA 110
           GH+K VSYVKFLSN ELASASTDSTLRLWDVKENLPVRTFRGH NEKNFVGL+V+SEYIA
Sbjct: 544 GHRKTVSYVKFLSNSELASASTDSTLRLWDVKENLPVRTFRGHTNEKNFVGLSVSSEYIA 603

Query: 111 CGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG 170
           CGSE+NEV+VYHKEISKPVTWHRF SP+MDD DEDAGSYFISAVCWKSDSPTML+ANSQG
Sbjct: 604 CGSETNEVFVYHKEISKPVTWHRFGSPEMDDADEDAGSYFISAVCWKSDSPTMLSANSQG 663

Query: 171 TIKVLVLAA 179
           TIKVLVLAA
Sbjct: 664 TIKVLVLAA 672

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|402685|gb|AAA32772.1| regulatory protein [Arabidopsis thaliana]

 Score =  313 bits (803), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 153/189 (80%), Positives = 166/189 (87%), Gaps = 14/189 (7%)

Query: 5   KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIA-----------KYQSTAPCVH--- 50
           KVKVWCTRQEASV+NIDMKANICCVKYNPGSSNYIA             ++ +  +H   
Sbjct: 487 KVKVWCTRQEASVINIDMKANICCVKYNPGSSNYIAVGSADHHIHYYDLRNISQPLHVFS 546

Query: 51  GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIA 110
           GHKKAVSYVKFLSN+ELASASTDSTLRLWDVK+NLPVRTFRGH NEKNFVGLTVNSEY+A
Sbjct: 547 GHKKAVSYVKFLSNNELASASTDSTLRLWDVKDNLPVRTFRGHTNEKNFVGLTVNSEYLA 606

Query: 111 CGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG 170
           CGSE+NEVYVYHKEI++PVT HRF SPDMDD +E+AGSYFISAVCWKSDSPTMLTANSQG
Sbjct: 607 CGSETNEVYVYHKEITRPVTSHRFGSPDMDDAEEEAGSYFISAVCWKSDSPTMLTANSQG 666

Query: 171 TIKVLVLAA 179
           TIKVLVLAA
Sbjct: 667 TIKVLVLAA 675

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493175|ref|XP_003616876.1| E3 ubiquitin-protein ligase COP1 [Medicago truncatula] gi|355518211|gb|AES99834.1| E3 ubiquitin-protein ligase COP1 [Medicago truncatula]

 Score =  311 bits (798), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 152/189 (80%), Positives = 165/189 (87%), Gaps = 14/189 (7%)

Query: 5   KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIA-----------KYQSTAPCVH--- 50
           KVKVWCT QEASVLNIDMKANICCVKYNPGS NYIA             ++ +  VH   
Sbjct: 573 KVKVWCTNQEASVLNIDMKANICCVKYNPGSGNYIAVGSADHHIHYYDLRNISRPVHVFS 632

Query: 51  GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIA 110
           GHKKAVSYVKFLSNDELASASTDSTLRLWDVK+N+PVRTFRGH NEKNFVGLTV+SEYIA
Sbjct: 633 GHKKAVSYVKFLSNDELASASTDSTLRLWDVKQNVPVRTFRGHANEKNFVGLTVSSEYIA 692

Query: 111 CGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG 170
           CGSE+NEV+VYHKEISKP+TWHRFSSPDMDD +++AGSYFISAVCWKSD PT+LTANSQG
Sbjct: 693 CGSETNEVFVYHKEISKPLTWHRFSSPDMDDAEDEAGSYFISAVCWKSDRPTILTANSQG 752

Query: 171 TIKVLVLAA 179
           TIKVLVLAA
Sbjct: 753 TIKVLVLAA 761

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15029364|gb|AAK81856.1|AF394913_1 photoregulatory zinc-finger protein COP1 [Rosa hybrid cultivar]

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 152/189 (80%), Positives = 166/189 (87%), Gaps = 14/189 (7%)

Query: 5   KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIA-----------KYQSTAPCVH--- 50
           KVKVWCTRQEASVLNIDMKANICCVKYNPGSSN IA             ++ +  +H   
Sbjct: 474 KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNCIAVGSADHHIHYYDLRNVSQPLHVFT 533

Query: 51  GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIA 110
           GH+KAVSYVKFLSN ELASASTDSTLRLW+VK+N+PVRTF+GH NEKNFVGLTVNSEYIA
Sbjct: 534 GHRKAVSYVKFLSNYELASASTDSTLRLWNVKDNIPVRTFKGHTNEKNFVGLTVNSEYIA 593

Query: 111 CGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG 170
           CGSE+NEV+VYHKEISKPVTWHRF SPDM+DT++DAGSYFISAVCWKSDSPTMLTANSQG
Sbjct: 594 CGSETNEVFVYHKEISKPVTWHRFGSPDMEDTEDDAGSYFISAVCWKSDSPTMLTANSQG 653

Query: 171 TIKVLVLAA 179
           TIKVLVLAA
Sbjct: 654 TIKVLVLAA 662

Source: Rosa hybrid cultivar

Species: Rosa hybrid cultivar

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823085|ref|XP_002879425.1| hypothetical protein ARALYDRAFT_902362 [Arabidopsis lyrata subsp. lyrata] gi|297325264|gb|EFH55684.1| hypothetical protein ARALYDRAFT_902362 [Arabidopsis lyrata subsp. lyrata]

 Score =  310 bits (795), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 151/189 (79%), Positives = 166/189 (87%), Gaps = 14/189 (7%)

Query: 5   KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIA-----------KYQSTAPCVH--- 50
           KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNY+A             ++ +  +H   
Sbjct: 487 KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYVAVGSADHHIHYYDLRNISQPLHVFS 546

Query: 51  GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIA 110
           GHKKAVSYVKFLSN+ELASASTDSTLRLWDVK++LPVRTFRGH NEKNFVGLTVNSEY+A
Sbjct: 547 GHKKAVSYVKFLSNNELASASTDSTLRLWDVKDHLPVRTFRGHTNEKNFVGLTVNSEYLA 606

Query: 111 CGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG 170
           CGSE+NEVYVYHKEI++PVT HRF SPDMDD +E+AGS+FISAVCWKSDSPTMLTANSQG
Sbjct: 607 CGSETNEVYVYHKEITRPVTSHRFGSPDMDDAEEEAGSFFISAVCWKSDSPTMLTANSQG 666

Query: 171 TIKVLVLAA 179
           TIKVLVLAA
Sbjct: 667 TIKVLVLAA 675

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8574407|emb|CAB94800.1| COP1 regulatory protein [Pisum sativum]

 Score =  308 bits (788), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 149/189 (78%), Positives = 162/189 (85%), Gaps = 14/189 (7%)

Query: 5   KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIA-----------KYQSTAPCVH--- 50
           KVKVWCT QEASVLNIDMKANICCVKYNPGS NYIA             ++ +  VH   
Sbjct: 782 KVKVWCTNQEASVLNIDMKANICCVKYNPGSGNYIAVGSADHHIHYYDLRNISRPVHVFT 841

Query: 51  GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIA 110
           GHKKAVSYVKFLSNDELASASTDSTLRLWDVK+NLPVRTFRGH NEKNFVGLTV SEYIA
Sbjct: 842 GHKKAVSYVKFLSNDELASASTDSTLRLWDVKQNLPVRTFRGHANEKNFVGLTVRSEYIA 901

Query: 111 CGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG 170
           CGSE+NEV+VYHKEISKP+TWHRF + DM+D +++AGSYFISAVCWKSD PT+LTANSQG
Sbjct: 902 CGSETNEVFVYHKEISKPLTWHRFGTLDMEDAEDEAGSYFISAVCWKSDRPTILTANSQG 961

Query: 171 TIKVLVLAA 179
           TIKVLVLAA
Sbjct: 962 TIKVLVLAA 970

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|332656170|gb|AEE81754.1| constitutively photomorphogenic 1 [Brassica rapa subsp. rapa]

 Score =  307 bits (786), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 151/189 (79%), Positives = 165/189 (87%), Gaps = 14/189 (7%)

Query: 5   KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIA-----------KYQSTAPCVH--- 50
           KVKVWCTRQEASVLNIDMKANICCVKYNPGSSN+IA             ++ +  +H   
Sbjct: 489 KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNFIAVGSADHHIHYYDLRNISQPLHVFS 548

Query: 51  GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIA 110
           GHKKAVSYVKFLSN+ELASASTDSTLRLWDVK+NLPVRTFRGH NEKNFVGLTVNSEY+A
Sbjct: 549 GHKKAVSYVKFLSNNELASASTDSTLRLWDVKDNLPVRTFRGHTNEKNFVGLTVNSEYLA 608

Query: 111 CGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG 170
           CGSE+NEVYVYHKEI+KPVT HRF S DM++ +E+AGSYFISAVCWKSDSPTMLTANSQG
Sbjct: 609 CGSETNEVYVYHKEITKPVTSHRFGSLDMEEAEEEAGSYFISAVCWKSDSPTMLTANSQG 668

Query: 171 TIKVLVLAA 179
           TIKVLVLAA
Sbjct: 669 TIKVLVLAA 677

Source: Brassica rapa subsp. rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501265|ref|XP_003519446.1| PREDICTED: E3 ubiquitin-protein ligase COP1-like [Glycine max]

 Score =  305 bits (781), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 148/189 (78%), Positives = 163/189 (86%), Gaps = 14/189 (7%)

Query: 5   KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIA-----------KYQSTAPCVH--- 50
           KVK+WCT QEASVLNIDMKANICCVKYNPGS NYIA             ++ +  VH   
Sbjct: 481 KVKIWCTNQEASVLNIDMKANICCVKYNPGSGNYIAVGSADHHIHYYDLRNISRPVHVFS 540

Query: 51  GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIA 110
           GH+KAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTF+GH NEKNFVGLTV+SEYIA
Sbjct: 541 GHRKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFKGHANEKNFVGLTVSSEYIA 600

Query: 111 CGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG 170
           CGSE+NEV+VYHKEIS+P+T HRF SPDMDD +++AGSYFISAVCWKSD PT+LTANSQG
Sbjct: 601 CGSETNEVFVYHKEISRPLTSHRFGSPDMDDAEDEAGSYFISAVCWKSDRPTILTANSQG 660

Query: 171 TIKVLVLAA 179
           TIKVLVLAA
Sbjct: 661 TIKVLVLAA 669

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
TAIR|locus:2059359	675	COP1 "CONSTITUTIVE PHOTOMORPHO	0.977	0.259	0.814	1.6e-77
DICTYBASE|DDB_G0288453	970	DDB_G0288453 "E3 ubiquitin-pro	0.960	0.177	0.550	1.6e-48
UNIPROTKB|H0Y339	566	RFWD2 "E3 ubiquitin-protein li	0.960	0.303	0.471	2e-40
RGD|1304773	433	Rfwd2 "ring finger and WD repe	0.960	0.397	0.471	2e-40
UNIPROTKB|Q8NHY2	731	RFWD2 "E3 ubiquitin-protein li	0.960	0.235	0.471	8.9e-40
UNIPROTKB|E2RRJ5	733	RFWD2 "Uncharacterized protein	0.960	0.234	0.471	9e-40
MGI|MGI:1347046	733	Rfwd2 "ring finger and WD repe	0.960	0.234	0.471	9e-40
UNIPROTKB|F1MHX1	735	RFWD2 "Uncharacterized protein	0.960	0.234	0.471	9.1e-40
ZFIN|ZDB-GENE-070410-134	694	rfwd2 "ring finger and WD repe	0.960	0.247	0.456	3.1e-38
UNIPROTKB|F1NQ64	717	RFWD2 "Uncharacterized protein	0.854	0.213	0.465	5.3e-35

TAIR|locus:2059359 COP1 "CONSTITUTIVE PHOTOMORPHOGENIC 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
 Identities = 154/189 (81%), Positives = 167/189 (88%)

Query:     5 KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIA--------KY---QSTAPCVH--- 50
             KVKVWCTRQEASV+NIDMKANICCVKYNPGSSNYIA         Y   ++ +  +H   
Sbjct:   487 KVKVWCTRQEASVINIDMKANICCVKYNPGSSNYIAVGSADHHIHYYDLRNISQPLHVFS 546

Query:    51 GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIA 110
             GHKKAVSYVKFLSN+ELASASTDSTLRLWDVK+NLPVRTFRGH NEKNFVGLTVNSEY+A
Sbjct:   547 GHKKAVSYVKFLSNNELASASTDSTLRLWDVKDNLPVRTFRGHTNEKNFVGLTVNSEYLA 606

Query:   111 CGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG 170
             CGSE+NEVYVYHKEI++PVT HRF SPDMDD +E+AGSYFISAVCWKSDSPTMLTANSQG
Sbjct:   607 CGSETNEVYVYHKEITRPVTSHRFGSPDMDDAEEEAGSYFISAVCWKSDSPTMLTANSQG 666

Query:   171 TIKVLVLAA 179
             TIKVLVLAA
Sbjct:   667 TIKVLVLAA 675

GO:0005634 "nucleus" evidence=ISM;IDA;IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009640 "photomorphogenesis" evidence=IGI;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0000152 "nuclear ubiquitin ligase complex" evidence=TAS

GO:0009647 "skotomorphogenesis" evidence=TAS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0010119 "regulation of stomatal movement" evidence=IGI;IMP

GO:0046283 "anthocyanin-containing compound metabolic process" evidence=IMP

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0048573 "photoperiodism, flowering" evidence=IMP

GO:0006281 "DNA repair" evidence=RCA;IMP

GO:0009649 "entrainment of circadian clock" evidence=IMP

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

GO:0009641 "shade avoidance" evidence=IMP

DICTYBASE|DDB_G0288453 DDB_G0288453 "E3 ubiquitin-protein ligase RFWD2" [Dictyostelium discoideum (taxid:44689)]

 Score = 515 (186.3 bits), Expect = 1.6e-48, P = 1.6e-48
 Identities = 104/189 (55%), Positives = 132/189 (69%)

Query:     5 KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIA--------------KYQSTAPCVH 50
             +VK+W T  E ++  I+ KANICCVK+NP SSN IA              +Y+       
Sbjct:   782 RVKLWSTTTERAITTIESKANICCVKFNPCSSNLIAFGSADHHIHYYDLRQYKDPLLIFK 841

Query:    51 GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIA 110
             GH+KAVSYVKF++ DE+ SASTDSTL+LW+V +N  VRTF GH NEKNFVGLTVN +YI 
Sbjct:   842 GHRKAVSYVKFMNKDEIISASTDSTLKLWNVNQNDCVRTFTGHSNEKNFVGLTVNGDYIC 901

Query:   111 CGSESNEVYVYHKEISKPVTWHRF--SSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS 168
             CGSE+N VY Y+K +SKP+  HRF  +S   ++TD+D GS F+S+VCWK DS  +L ANS
Sbjct:   902 CGSENNGVYTYYKTLSKPIVTHRFGANSGTGEETDDD-GSQFVSSVCWKKDSNILLAANS 960

Query:   169 QGTIKVLVL 177
             QG IK+L L
Sbjct:   961 QGNIKILSL 969

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|H0Y339 RFWD2 "E3 ubiquitin-protein ligase RFWD2" [Homo sapiens (taxid:9606)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 92/195 (47%), Positives = 128/195 (65%)

Query:     5 KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPCVH-------------- 50
             KVK+W T  + SV +I+ KAN+CCVK++P SS Y   +     CVH              
Sbjct:   372 KVKLWSTNLDNSVASIEAKANVCCVKFSP-SSRYHLAFGCADHCVHYYDLRNTKQPIMVF 430

Query:    51 -GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI 109
              GH+KAVSY KF+S +E+ SASTDS L+LW+V +   +R+F+GH+NEKNFVGL  N +YI
Sbjct:   431 KGHRKAVSYAKFVSGEEIVSASTDSQLKLWNVGKPYCLRSFKGHINEKNFVGLASNGDYI 490

Query:   110 ACGSESNEVYVYHKEISKPVTWHRFSSPD--MD-DTDEDAGSYFISAVCWKS----DSPT 162
             ACGSE+N +Y+Y+K +SK +   +F +    +D D  ED  + F+SAVCW++    +S  
Sbjct:   491 ACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALPDGESNV 550

Query:   163 MLTANSQGTIKVLVL 177
             ++ ANSQGTIKVL L
Sbjct:   551 LIAANSQGTIKVLEL 565

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0005925 "focal adhesion" evidence=IDA

RGD|1304773 Rfwd2 "ring finger and WD repeat domain 2" [Rattus norvegicus (taxid:10116)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 92/195 (47%), Positives = 128/195 (65%)

Query:     5 KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPCVH-------------- 50
             KVK+W T  + SV +I+ KAN+CCVK++P SS Y   +     CVH              
Sbjct:   239 KVKLWSTNLDNSVASIEAKANVCCVKFSP-SSRYHLAFGCADHCVHYYDLRNTKQPIMVF 297

Query:    51 -GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI 109
              GH+KAVSY KF+S +E+ SASTDS L+LW+V +   +R+F+GH+NEKNFVGL  N +YI
Sbjct:   298 KGHRKAVSYAKFVSGEEIVSASTDSQLKLWNVGKPYCLRSFKGHINEKNFVGLASNGDYI 357

Query:   110 ACGSESNEVYVYHKEISKPVTWHRFSSPD--MD-DTDEDAGSYFISAVCWKS----DSPT 162
             ACGSE+N +Y+Y+K +SK +   +F +    +D D  ED  + F+SAVCW++    +S  
Sbjct:   358 ACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALSDGESNV 417

Query:   163 MLTANSQGTIKVLVL 177
             ++ ANSQGTIKVL L
Sbjct:   418 LIAANSQGTIKVLEL 432

GO:0000139 "Golgi membrane" evidence=IDA

UNIPROTKB|Q8NHY2 RFWD2 "E3 ubiquitin-protein ligase RFWD2" [Homo sapiens (taxid:9606)]

 Score = 430 (156.4 bits), Expect = 8.9e-40, P = 8.9e-40
 Identities = 92/195 (47%), Positives = 128/195 (65%)

Query:     5 KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPCVH-------------- 50
             KVK+W T  + SV +I+ KAN+CCVK++P SS Y   +     CVH              
Sbjct:   537 KVKLWSTNLDNSVASIEAKANVCCVKFSP-SSRYHLAFGCADHCVHYYDLRNTKQPIMVF 595

Query:    51 -GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI 109
              GH+KAVSY KF+S +E+ SASTDS L+LW+V +   +R+F+GH+NEKNFVGL  N +YI
Sbjct:   596 KGHRKAVSYAKFVSGEEIVSASTDSQLKLWNVGKPYCLRSFKGHINEKNFVGLASNGDYI 655

Query:   110 ACGSESNEVYVYHKEISKPVTWHRFSSPD--MD-DTDEDAGSYFISAVCWKS----DSPT 162
             ACGSE+N +Y+Y+K +SK +   +F +    +D D  ED  + F+SAVCW++    +S  
Sbjct:   656 ACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALPDGESNV 715

Query:   163 MLTANSQGTIKVLVL 177
             ++ ANSQGTIKVL L
Sbjct:   716 LIAANSQGTIKVLEL 730

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0005925 "focal adhesion" evidence=IDA

UNIPROTKB|E2RRJ5 RFWD2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 430 (156.4 bits), Expect = 9.0e-40, P = 9.0e-40
 Identities = 92/195 (47%), Positives = 128/195 (65%)

Query:     5 KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPCVH-------------- 50
             KVK+W T  + SV +I+ KAN+CCVK++P SS Y   +     CVH              
Sbjct:   539 KVKLWSTNLDNSVASIEAKANVCCVKFSP-SSRYHLAFGCADHCVHYYDLRNTKQPIMVF 597

Query:    51 -GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI 109
              GH+KAVSY KF+S +E+ SASTDS L+LW+V +   +R+F+GH+NEKNFVGL  N +YI
Sbjct:   598 KGHRKAVSYAKFVSGEEIVSASTDSQLKLWNVGKPYCLRSFKGHINEKNFVGLASNGDYI 657

Query:   110 ACGSESNEVYVYHKEISKPVTWHRFSSPD--MD-DTDEDAGSYFISAVCWKS----DSPT 162
             ACGSE+N +Y+Y+K +SK +   +F +    +D D  ED  + F+SAVCW++    +S  
Sbjct:   658 ACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALPDGESNV 717

Query:   163 MLTANSQGTIKVLVL 177
             ++ ANSQGTIKVL L
Sbjct:   718 LIAANSQGTIKVLEL 732

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1347046 Rfwd2 "ring finger and WD repeat domain 2" [Mus musculus (taxid:10090)]

 Score = 430 (156.4 bits), Expect = 9.0e-40, P = 9.0e-40
 Identities = 92/195 (47%), Positives = 128/195 (65%)

Query:     5 KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPCVH-------------- 50
             KVK+W T  + SV +I+ KAN+CCVK++P SS Y   +     CVH              
Sbjct:   539 KVKLWSTNLDNSVASIEAKANVCCVKFSP-SSRYHLAFGCADHCVHYYDLRNTKQPIMVF 597

Query:    51 -GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI 109
              GH+KAVSY KF+S +E+ SASTDS L+LW+V +   +R+F+GH+NEKNFVGL  N +YI
Sbjct:   598 KGHRKAVSYAKFVSGEEIVSASTDSQLKLWNVGKPYCLRSFKGHINEKNFVGLASNGDYI 657

Query:   110 ACGSESNEVYVYHKEISKPVTWHRFSSPD--MD-DTDEDAGSYFISAVCWKS----DSPT 162
             ACGSE+N +Y+Y+K +SK +   +F +    +D D  ED  + F+SAVCW++    +S  
Sbjct:   658 ACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALSDGESNV 717

Query:   163 MLTANSQGTIKVLVL 177
             ++ ANSQGTIKVL L
Sbjct:   718 LIAANSQGTIKVLEL 732

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1MHX1 RFWD2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 430 (156.4 bits), Expect = 9.1e-40, P = 9.1e-40
 Identities = 92/195 (47%), Positives = 128/195 (65%)

Query:     5 KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPCVH-------------- 50
             KVK+W T  + SV +I+ KAN+CCVK++P SS Y   +     CVH              
Sbjct:   541 KVKLWSTNLDNSVASIEAKANVCCVKFSP-SSRYHLAFGCADHCVHYYDLRNTKQPIMVF 599

Query:    51 -GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI 109
              GH+KAVSY KF+S +E+ SASTDS L+LW+V +   +R+F+GH+NEKNFVGL  N +YI
Sbjct:   600 KGHRKAVSYAKFVSGEEIVSASTDSQLKLWNVGKPYCLRSFKGHINEKNFVGLASNGDYI 659

Query:   110 ACGSESNEVYVYHKEISKPVTWHRFSSPD--MD-DTDEDAGSYFISAVCWKS----DSPT 162
             ACGSE+N +Y+Y+K +SK +   +F +    +D D  ED  + F+SAVCW++    +S  
Sbjct:   660 ACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALPDGESNV 719

Query:   163 MLTANSQGTIKVLVL 177
             ++ ANSQGTIKVL L
Sbjct:   720 LIAANSQGTIKVLEL 734

GO:0005925 "focal adhesion" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-070410-134 rfwd2 "ring finger and WD repeat domain 2" [Danio rerio (taxid:7955)]

 Score = 415 (151.1 bits), Expect = 3.1e-38, P = 3.1e-38
 Identities = 89/195 (45%), Positives = 127/195 (65%)

Query:     5 KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPCVH-------------- 50
             KVK+W T  + SV +I+ KAN+CCVK++P S  ++A +     CVH              
Sbjct:   500 KVKLWSTNLDNSVASIEAKANVCCVKFSPTSRYHLA-FGCADHCVHYYDLRNAKQPIMVF 558

Query:    51 -GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI 109
              GH+KAVSY KF++  E+ SASTDS L+LW+V +   +R+F+GH+NEKNFVGL  N +Y+
Sbjct:   559 KGHRKAVSYAKFVNGGEIVSASTDSQLKLWNVNKPHCLRSFKGHINEKNFVGLASNGDYV 618

Query:   110 ACGSESNEVYVYHKEISKPVTWHRFSSPD--MD-DTDEDAGSYFISAVCWKS----DSPT 162
             ACGSE+N +Y+Y K +SK +   +F +    +D D  ED  + F+SAVCW++    +S  
Sbjct:   619 ACGSENNSLYLYCKGLSKTLLTFKFDTVKSVLDKDKKEDDTNEFVSAVCWRALPDGESNV 678

Query:   163 MLTANSQGTIKVLVL 177
             ++ ANSQGTIKVL L
Sbjct:   679 LIAANSQGTIKVLEL 693

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1NQ64 RFWD2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 386 (140.9 bits), Expect = 5.3e-35, P = 5.3e-35
 Identities = 80/172 (46%), Positives = 113/172 (65%)

Query:     5 KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPCVH-------------- 50
             KVK+W T  + SV +I+ KAN+CCVK++P SS Y   +     CVH              
Sbjct:   523 KVKLWSTNLDNSVASIEAKANVCCVKFSP-SSRYHLAFGCADHCVHYYDLRNTKQPIMVF 581

Query:    51 -GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI 109
              GH+KAVSY KF+S +E+ SASTDS L+LW+V +   +R+F+GH+NEKNFVGL  N +YI
Sbjct:   582 KGHRKAVSYAKFVSGEEIVSASTDSQLKLWNVGKPHCLRSFKGHINEKNFVGLASNGDYI 641

Query:   110 ACGSESNEVYVYHKEISKPVTWHRFSSPD--MD-DTDEDAGSYFISAVCWKS 158
             ACGSE+N +Y+Y+K +SK +   +F +    +D D  ED  + F+SAVCW++
Sbjct:   642 ACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRA 693

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P43254	COP1_ARATH	6, ., 3, ., 2, ., -	0.8095	0.9776	0.2592	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	COP1	COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1); protein binding / ubiquitin-protein ligase; Represses photomorphogenesis and induces skotomorphogenesis in the dark. Contains a ring finger zinc-binding motif, a coiled-coil domain, and several WD-40 repeats, similar to G-beta proteins. The C-terminus has homology to TAFII80, a subunit of the TFIID component of the RNA polymerase II of Drosophila. Nuclear localization in the dark and cytoplasmic in the light. ; E3 ubiquitin-protein ligase that acts as a repressor of photomorphogenesis and as an activator of etiolation in darkness. E3 ubiquitin li [...] (675 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	HY5	HY5 (ELONGATED HYPOCOTYL 5); DNA binding / double-stranded DNA binding / transcription factor; [...] (168 aa)					•		•		0.999
	SPA1	SPA1 (SUPPRESSOR OF PHYA-105 1); protein binding / signal transducer; Encodes a member of the S [...] (1029 aa)				•	•	•	•	•	0.999
	HFR1	HFR1 (LONG HYPOCOTYL IN FAR-RED); DNA binding / protein binding / transcription factor; Encodes [...] (292 aa)					•		•		0.999
	FUS9	FUS9 (FUSCA 9); protein binding / ubiquitin-protein ligase; Encodes a protein similar to ubiqui [...] (182 aa)					•		•		0.999
	CRY2	CRY2 (CRYPTOCHROME 2); blue light photoreceptor/ protein homodimerization; Blue light receptor [...] (612 aa)					•		•		0.999
	PHYA	PHYA (PHYTOCHROME A); G-protein coupled photoreceptor/ protein histidine kinase/ red or far-red [...] (1122 aa)					•		•		0.999
	CRY1	CRY1 (CRYPTOCHROME 1); ATP binding / blue light photoreceptor/ protein homodimerization/ protei [...] (681 aa)					•		•		0.998
	CIP8	CIP8 (COP1-INTERACTING PROTEIN 8); protein binding / zinc ion binding; Encodes a RING-H2 protei [...] (334 aa)					•		•		0.998
	AT2G31380.1-P	STH; protein domain specific binding / transcription factor/ zinc ion binding; a B-box zinc fin [...] (238 aa)					•		•		0.997
	SPA4	SPA4 (SPA1-RELATED 4); protein binding / signal transducer; Encodes a member of the SPA (suppre [...] (794 aa)				•	•	•	•	•	0.996

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	179
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	3e-42
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-11
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-04
smart00320	40	smart00320, WD40, WD40 repeats	0.001

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score =  149 bits (377), Expect = 3e-42
 Identities = 82/194 (42%), Positives = 113/194 (58%), Gaps = 23/194 (11%)

Query: 4   GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPCVH------------- 50
           G VK+W   Q  S+  I  KANICCV++ P  S     + S    V+             
Sbjct: 598 GSVKLWSINQGVSIGTIKTKANICCVQF-PSESGRSLAFGSADHKVYYYDLRNPKLPLCT 656

Query: 51  --GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENL------PVRTFRGHMNEKNFVGL 102
             GH K VSYV+F+ +  L S+STD+TL+LWD+  ++      P+ +F GH N KNFVGL
Sbjct: 657 MIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGL 716

Query: 103 TVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPD-MDDTDEDAGSYFISAVCWKSDSP 161
           +V+  YIA GSE+NEV+VYHK    PV  ++F + D +   + D  S FIS+VCW+  S 
Sbjct: 717 SVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSS 776

Query: 162 TMLTANSQGTIKVL 175
           T++ ANS G IK+L
Sbjct: 777 TLVAANSTGNIKIL 790

Length = 793

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 13/126 (10%)

Query: 50  HGHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEY 108
            GH   VS V F  +   L+S+S D T+++WDV+    + T RGH +  N V  + +  +
Sbjct: 90  TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTF 149

Query: 109 IACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS 168
           +A  S+   + ++     K V     +    +          +++V +  D   +L+++S
Sbjct: 150 VASSSQDGTIKLWDLRTGKCV--ATLTGHTGE----------VNSVAFSPDGEKLLSSSS 197

Query: 169 QGTIKV 174
            GTIK+
Sbjct: 198 DGTIKL 203

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 59.3 bits (144), Expect = 6e-11
 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 15/126 (11%)

Query: 51  GHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI 109
           GH   V+ V F  + + LA+ S D T+++WD++    +RT +GH      V  + +  Y+
Sbjct: 7   GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYL 66

Query: 110 ACGSESNEVYVYHKEISKPV-TWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS 168
           A GS    + ++  E  + V T    +S              +S+V +  D   + +++ 
Sbjct: 67  ASGSSDKTIRLWDLETGECVRTLTGHTSY-------------VSSVAFSPDGRILSSSSR 113

Query: 169 QGTIKV 174
             TIKV
Sbjct: 114 DKTIKV 119

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 16/135 (11%)

Query: 44  STAPCVH---GHKKAVSYVKFL-SNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNF 99
            T  CV    GH   V+ V F    ++L S+S+D T++LWD+     + T RGH N  N 
Sbjct: 165 RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS 224

Query: 100 VGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD 159
           V  + +   +A GSE   + V+             S               ++++ W  D
Sbjct: 225 VAFSPDGYLLASGSEDGTIRVWDLR--TGECVQTLSGHTN----------SVTSLAWSPD 272

Query: 160 SPTMLTANSQGTIKV 174
              + + ++ GTI++
Sbjct: 273 GKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 46.6 bits (109), Expect = 2e-06
 Identities = 38/192 (19%), Positives = 74/192 (38%), Gaps = 27/192 (14%)

Query: 4   GKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIA--------------KYQSTAPC 48
           G +K+W  R    +  +      +  + ++P     IA                +     
Sbjct: 178 GTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRST 237

Query: 49  VHGHKKAVSYVKFLSNDELASASTDSTLRLWDVK-ENLPVRTFRGHMNEKNFVGLTVNSE 107
           + GH  +V          LAS S+D T+RLWD++  +  +RT  GH +    V  + + +
Sbjct: 238 LSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK 297

Query: 108 YIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN 167
            +A GS    V ++  E  K ++       +            +S++ +  D   +++  
Sbjct: 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGP----------VSSLSFSPDGSLLVSGG 347

Query: 168 SQ-GTIKVLVLA 178
           S  GTI++  L 
Sbjct: 348 SDDGTIRLWDLR 359

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 44.7 bits (104), Expect = 9e-06
 Identities = 27/167 (16%), Positives = 64/167 (38%), Gaps = 17/167 (10%)

Query: 13  QEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAP--CVHGHKKAVSYVKFLSNDE--LA 68
            + ++ + D  + +       G+               + GH ++V+ + F  + +   +
Sbjct: 113 SKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLAS 172

Query: 69  SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE-YIACGSESNEVYVYHKEISK 127
            +S D T++LWD++   P+ T  GH +  + +  + +    IA GS    + ++     K
Sbjct: 173 GSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK 232

Query: 128 PVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV 174
            +        D   +             +  D   + + +S GTI++
Sbjct: 233 LLRSTLSGHSDSVVS------------SFSPDGSLLASGSSDGTIRL 267

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.5 bits (93), Expect = 3e-04
 Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 16/135 (11%)

Query: 4   GKVKVWCTRQEASVLNIDMKAN---ICCVKYNPGSSNYIAKYQS-------------TAP 47
           G V++W       + ++ +K +   +  + ++P  S  ++                    
Sbjct: 306 GTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLK 365

Query: 48  CVHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE 107
            + GH   +S         ++S STD T+RLWD+     +R   GH +    +  + + +
Sbjct: 366 TLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGK 425

Query: 108 YIACGSESNEVYVYH 122
            +A GS  N + ++ 
Sbjct: 426 SLASGSSDNTIRLWD 440

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.8 bits (83), Expect = 5e-04
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 50 HGHKKAVSYVKFLSNDE-LASASTDSTLRLWD 80
           GH   V+ V F  +   LAS S D T+R+WD
Sbjct: 8  KGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.0 bits (81), Expect = 0.001
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 50 HGHKKAVSYVKFLSNDE-LASASTDSTLRLWD 80
           GH   V+ V F  + + LAS S D T++LWD
Sbjct: 9  KGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.98
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.97
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.97
KOG0286	343	consensus G-protein beta subunit [General function	99.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.96
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.96
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.96
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0266	456	consensus WD40 repeat-containing protein [General	99.96
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.96
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.96
PTZ00421	493	coronin; Provisional	99.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.95
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.95
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.95
PLN00181	793	protein SPA1-RELATED; Provisional	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.94
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.94
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.94
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.94
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.94
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.94
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.94
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.94
KOG0645	312	consensus WD40 repeat protein [General function pr	99.93
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.93
PLN00181	793	protein SPA1-RELATED; Provisional	99.93
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.93
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.93
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.93
KOG0296	399	consensus Angio-associated migratory cell protein	99.93
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.92
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.92
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.92
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.92
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.92
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.92
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.92
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.92
KOG0646	476	consensus WD40 repeat protein [General function pr	99.92
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.92
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.92
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.91
KOG0643	327	consensus Translation initiation factor 3, subunit	99.91
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.91
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.91
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.91
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.91
KOG0296	399	consensus Angio-associated migratory cell protein	99.91
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.91
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.91
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.9
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.9
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.9
KOG1274	933	consensus WD40 repeat protein [General function pr	99.9
KOG0641	350	consensus WD40 repeat protein [General function pr	99.9
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.89
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.89
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.89
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.89
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.89
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.89
KOG0639	705	consensus Transducin-like enhancer of split protei	99.88
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.88
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.88
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.88
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.87
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.87
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.87
KOG0267	825	consensus Microtubule severing protein katanin p80	99.87
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.87
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.87
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.87
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.86
KOG2096	420	consensus WD40 repeat protein [General function pr	99.86
KOG1539	910	consensus WD repeat protein [General function pred	99.86
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.86
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.86
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.86
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.86
KOG1539	910	consensus WD repeat protein [General function pred	99.86
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.85
KOG4328	498	consensus WD40 protein [Function unknown]	99.85
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.85
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.85
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.85
KOG0641	350	consensus WD40 repeat protein [General function pr	99.85
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.85
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.85
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.84
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.84
KOG2096	420	consensus WD40 repeat protein [General function pr	99.83
KOG0646	476	consensus WD40 repeat protein [General function pr	99.83
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.83
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.83
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.82
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.82
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.82
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.82
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.82
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.81
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.81
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.8
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.8
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.8
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.8
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.8
KOG2048	691	consensus WD40 repeat protein [General function pr	99.8
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.8
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.79
KOG1273	405	consensus WD40 repeat protein [General function pr	99.79
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.79
KOG2055	514	consensus WD40 repeat protein [General function pr	99.79
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.79
KOG1188	376	consensus WD40 repeat protein [General function pr	99.79
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.79
KOG2055	514	consensus WD40 repeat protein [General function pr	99.78
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.78
KOG2048	691	consensus WD40 repeat protein [General function pr	99.78
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.78
KOG1273	405	consensus WD40 repeat protein [General function pr	99.77
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.77
KOG1274	933	consensus WD40 repeat protein [General function pr	99.77
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.77
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.76
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.76
KOG0649	325	consensus WD40 repeat protein [General function pr	99.76
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.75
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.75
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.75
KOG0639	705	consensus Transducin-like enhancer of split protei	99.74
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.74
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.74
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.74
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.73
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.73
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.73
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.72
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.72
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.72
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.71
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.7
KOG1188	376	consensus WD40 repeat protein [General function pr	99.7
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.7
KOG2139	445	consensus WD40 repeat protein [General function pr	99.7
KOG4328	498	consensus WD40 protein [Function unknown]	99.69
COG2319	466	FOG: WD40 repeat [General function prediction only	99.69
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.69
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.69
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.67
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.67
PRK01742	429	tolB translocation protein TolB; Provisional	99.66
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.66
PRK11028	330	6-phosphogluconolactonase; Provisional	99.66
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.65
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.65
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.64
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.64
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.64
KOG2321	703	consensus WD40 repeat protein [General function pr	99.64
PRK01742	429	tolB translocation protein TolB; Provisional	99.64
KOG1963	792	consensus WD40 repeat protein [General function pr	99.64
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.64
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.63
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.62
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.62
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.62
PRK04922	433	tolB translocation protein TolB; Provisional	99.62
COG2319	466	FOG: WD40 repeat [General function prediction only	99.62
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.62
PRK03629	429	tolB translocation protein TolB; Provisional	99.61
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.6
PRK05137	435	tolB translocation protein TolB; Provisional	99.6
KOG1310	758	consensus WD40 repeat protein [General function pr	99.6
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.59
KOG0649	325	consensus WD40 repeat protein [General function pr	99.58
PRK02889	427	tolB translocation protein TolB; Provisional	99.57
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.57
KOG1310	758	consensus WD40 repeat protein [General function pr	99.57
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.57
PRK03629	429	tolB translocation protein TolB; Provisional	99.56
KOG4227	609	consensus WD40 repeat protein [General function pr	99.56
PRK11028	330	6-phosphogluconolactonase; Provisional	99.55
PRK05137	435	tolB translocation protein TolB; Provisional	99.55
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.54
KOG4547	541	consensus WD40 repeat-containing protein [General	99.53
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.53
PRK04922	433	tolB translocation protein TolB; Provisional	99.52
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.51
KOG4227	609	consensus WD40 repeat protein [General function pr	99.51
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.5
PRK02889	427	tolB translocation protein TolB; Provisional	99.49
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.48
KOG2139	445	consensus WD40 repeat protein [General function pr	99.47
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.47
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.47
PRK00178	430	tolB translocation protein TolB; Provisional	99.46
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.46
KOG2321	703	consensus WD40 repeat protein [General function pr	99.46
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.45
PRK04792	448	tolB translocation protein TolB; Provisional	99.41
PRK01029	428	tolB translocation protein TolB; Provisional	99.4
KOG2315	566	consensus Predicted translation initiation factor	99.4
KOG2315	566	consensus Predicted translation initiation factor	99.4
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.39
KOG1963	792	consensus WD40 repeat protein [General function pr	99.39
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.39
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.39
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.39
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.36
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.35
PRK00178	430	tolB translocation protein TolB; Provisional	99.32
PRK01029	428	tolB translocation protein TolB; Provisional	99.32
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.3
PRK04792	448	tolB translocation protein TolB; Provisional	99.28
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.23
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.22
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.22
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.2
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.19
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.19
KOG1334	559	consensus WD40 repeat protein [General function pr	99.18
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.17
PRK04043	419	tolB translocation protein TolB; Provisional	99.15
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.15
KOG1334	559	consensus WD40 repeat protein [General function pr	99.08
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.06
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.04
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.03
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.02
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.01
KOG2695	425	consensus WD40 repeat protein [General function pr	99.0
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.0
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.0
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.99
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.99
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.98
PRK04043	419	tolB translocation protein TolB; Provisional	98.98
KOG4547	541	consensus WD40 repeat-containing protein [General	98.97
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.96
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.94
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.93
COG4946	668	Uncharacterized protein related to the periplasmic	98.92
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.91
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.9
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.87
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.86
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.86
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.83
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.82
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.82
KOG2695	425	consensus WD40 repeat protein [General function pr	98.8
PRK02888	635	nitrous-oxide reductase; Validated	98.79
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.76
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.73
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.71
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.65
COG4946	668	Uncharacterized protein related to the periplasmic	98.64
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.64
KOG2314	698	consensus Translation initiation factor 3, subunit	98.63
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.62
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.62
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.6
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.57
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.57
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.53
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.52
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.52
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.51
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.51
KOG2314	698	consensus Translation initiation factor 3, subunit	98.5
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.5
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.5
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.5
KOG3621	726	consensus WD40 repeat-containing protein [General	98.49
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.49
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.49
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.46
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.45
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.43
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.42
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.41
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.38
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.33
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.32
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.32
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.31
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.27
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.26
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.25
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.25
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.24
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.16
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.13
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.11
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.1
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.05
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	98.02
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.99
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.99
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.97
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.89
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.83
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.82
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.78
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.77
PRK02888	635	nitrous-oxide reductase; Validated	97.74
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.73
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.73
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.73
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.7
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.66
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.61
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.6
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.56
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.5
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.47
KOG2395	644	consensus Protein involved in vacuole import and d	97.45
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.44
COG3391	381	Uncharacterized conserved protein [Function unknow	97.43
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.43
PRK13616	591	lipoprotein LpqB; Provisional	97.39
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.38
COG3391	381	Uncharacterized conserved protein [Function unknow	97.32
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	97.3
PRK13616	591	lipoprotein LpqB; Provisional	97.29
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.27
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.12
KOG3621	726	consensus WD40 repeat-containing protein [General	97.12
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.06
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.06
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.05
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.01
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.97
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.95
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.89
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.88
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.85
KOG2444	238	consensus WD40 repeat protein [General function pr	96.83
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.78
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.76
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.73
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.68
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.66
COG5167	776	VID27 Protein involved in vacuole import and degra	96.57
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.54
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.51
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.5
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	96.5
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.4
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.38
KOG2395	644	consensus Protein involved in vacuole import and d	96.36
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.28
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.28
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	96.26
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.22
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.19
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.02
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	95.98
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	95.96
PHA02713	557	hypothetical protein; Provisional	95.93
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.85
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.73
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.73
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.53
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.23
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.14
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.11
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.07
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.06
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	94.99
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	94.94
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	94.91
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.79
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	94.61
PRK10115	686	protease 2; Provisional	94.52
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.51
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.44
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.18
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.16
PHA03098	534	kelch-like protein; Provisional	93.94
KOG2444	238	consensus WD40 repeat protein [General function pr	93.86
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	93.68
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.65
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	93.39
KOG2377	657	consensus Uncharacterized conserved protein [Funct	93.36
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	93.29
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.16
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	92.78
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	92.63
PF13449	326	Phytase-like: Esterase-like activity of phytase	92.37
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	92.34
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	92.32
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	91.97
COG4590	733	ABC-type uncharacterized transport system, permeas	91.73
PHA02713	557	hypothetical protein; Provisional	91.62
KOG2247	615	consensus WD40 repeat-containing protein [General	91.59
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	91.16
KOG2377	657	consensus Uncharacterized conserved protein [Funct	91.09
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.07
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	90.91
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	90.79
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	90.69
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	90.35
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	90.29
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	90.08
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	90.04
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	90.01
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	89.79
PRK13684	334	Ycf48-like protein; Provisional	89.52
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	89.06
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	88.8
KOG3616	1636	consensus Selective LIM binding factor [Transcript	88.66
PHA03098	534	kelch-like protein; Provisional	88.29
PF12768	281	Rax2: Cortical protein marker for cell polarity	88.21
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	87.41
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	87.23
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	87.22
KOG2109	788	consensus WD40 repeat protein [General function pr	86.59
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	86.51
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	86.5
COG5276	370	Uncharacterized conserved protein [Function unknow	86.33
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	85.87
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	85.36
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	85.01
PRK13684	334	Ycf48-like protein; Provisional	84.95
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	84.89
COG5308	1263	NUP170 Nuclear pore complex subunit [Intracellular	84.68
PHA02790	480	Kelch-like protein; Provisional	84.63
PF13449	326	Phytase-like: Esterase-like activity of phytase	84.36
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	84.35
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	84.2
COG1520	370	FOG: WD40-like repeat [Function unknown]	83.85
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	83.69
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	83.53
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	83.34
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	83.3
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	83.21
COG5167	776	VID27 Protein involved in vacuole import and degra	82.85
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	82.74
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	82.7
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	82.59
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	82.47
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	81.64
KOG3616	1636	consensus Selective LIM binding factor [Transcript	81.5
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	81.08
PHA02790	480	Kelch-like protein; Provisional	80.85

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=7.9e-36  Score=214.09  Aligned_cols=165  Identities=22%  Similarity=0.384  Sum_probs=151.6

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-C
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-D   65 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~   65 (179)
                      |+|+++++|++.+..++..+. |..||..++|+|.| ++++++           ....++  +.+|...|.|+.|+|+ .
T Consensus       470 SED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~  548 (707)
T KOG0263|consen  470 SEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSN  548 (707)
T ss_pred             cCCcceeeeecccceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCchhhhcccccccceEEECCccc
Confidence            689999999999999988886 88999999999999 777776           333444  8899999999999999 9


Q ss_pred             eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCccc
Q 038439           66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDED  145 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  145 (179)
                      ++++||.|.+||+||+.+|..++.|.+|.++|.+++|+|+|++|++|+.|+.|++||+.+++++..+.           +
T Consensus       549 Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~-----------~  617 (707)
T KOG0263|consen  549 YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK-----------G  617 (707)
T ss_pred             ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh-----------c
Confidence            99999999999999999999999999999999999999999999999999999999999999887654           2


Q ss_pred             CCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          146 AGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       146 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      | .+.|.++.|+.+|..|++|+.|..|++||+.
T Consensus       618 H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  618 H-TGTIYSLSFSRDGNVLASGGADNSVRLWDLT  649 (707)
T ss_pred             c-cCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence            3 7789999999999999999999999999974

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.5e-35  Score=200.10  Aligned_cols=166  Identities=23%  Similarity=0.330  Sum_probs=148.1

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-Ce
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DE   66 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~   66 (179)
                      +.||++++|++.+..++..+. |..+|..++|+|+|+.+..++          +++..+  ..+|...|.+++|+|+ .+
T Consensus       238 s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL  317 (459)
T KOG0272|consen  238 SADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSL  317 (459)
T ss_pred             ccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCce
Confidence            579999999999988888886 889999999999996555555          444444  8899999999999999 99


Q ss_pred             EEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccC
Q 038439           67 LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDA  146 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  146 (179)
                      ++||+.|..-||||+++++++..+.+|..+|..++|+|+|-.+++|+.|++++|||++..+++..+.  .          
T Consensus       318 ~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip--A----------  385 (459)
T KOG0272|consen  318 AATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP--A----------  385 (459)
T ss_pred             eeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc--c----------
Confidence            9999999999999999999999999999999999999999999999999999999999988754433  2          


Q ss_pred             CcceEEEEEEcc-CCCeEEEEeCCCcEEEEeec
Q 038439          147 GSYFISAVCWKS-DSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       147 ~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~  178 (179)
                      |..-|+.++|+| .|.+|++++.|++++||..+
T Consensus       386 H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~  418 (459)
T KOG0272|consen  386 HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR  418 (459)
T ss_pred             ccchhhheEecccCCeEEEEcccCcceeeecCC
Confidence            388899999998 78999999999999999754

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.1e-35  Score=197.95  Aligned_cols=166  Identities=23%  Similarity=0.283  Sum_probs=149.7

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCC-CCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPG-SSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~-~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-   64 (179)
                      |.+|.++||+..+...++++. |.+.|.++.|+|. ...-++++           ....++  +.+|...|..++|+|+ 
T Consensus       194 swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG  273 (459)
T KOG0272|consen  194 SWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSG  273 (459)
T ss_pred             ecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCC
Confidence            568999999999998888885 9999999999998 34445554           344566  8999999999999999 


Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE  144 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~  144 (179)
                      .+|+|+|.|.+-++||++++..+....+|...|.+++|.|||..+++|+.|..-+|||+++++.+..+.           
T Consensus       274 ~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~-----------  342 (459)
T KOG0272|consen  274 KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA-----------  342 (459)
T ss_pred             ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEec-----------
Confidence            999999999999999999999999999999999999999999999999999999999999999987654           


Q ss_pred             cCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          145 DAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       145 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      + |...|..+.|+|+|..|++|+.|++++|||++
T Consensus       343 g-H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR  375 (459)
T KOG0272|consen  343 G-HIKEILSVAFSPNGYHLATGSSDNTCKVWDLR  375 (459)
T ss_pred             c-cccceeeEeECCCceEEeecCCCCcEEEeeec
Confidence            2 28899999999999999999999999999986

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=5.6e-33  Score=180.24  Aligned_cols=166  Identities=20%  Similarity=0.311  Sum_probs=149.6

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCC--c---ee---eecccCceeEEE
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QST--A---PC---VHGHKKAVSYVK   60 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~--~---~~---~~~~~~~i~~~~   60 (179)
                      |.||.+.|||..+...++.+. ....|..++|+|.| +++++|           ...  +   ++   +.+|++-+.|..
T Consensus        74 SqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg-~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~  152 (343)
T KOG0286|consen   74 SQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSG-NFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCR  152 (343)
T ss_pred             ccCCeEEEEEcccccceeEEecCceeEEEEEECCCC-CeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEE
Confidence            579999999999999988888 45679999999999 677777           111  1   22   889999999999


Q ss_pred             EeeCCeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEee-CCCEEEEeccCCcEEEEEcCCCccccccccCCCCC
Q 038439           61 FLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTV-NSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDM  139 (179)
Q Consensus        61 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~  139 (179)
                      |.+++.|+|+|.|.+..+||+++++.+..|.+|.+.|.+++++| +++.|++|+-|+..++||+|.+..++.+.-     
T Consensus       153 f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~g-----  227 (343)
T KOG0286|consen  153 FLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEG-----  227 (343)
T ss_pred             EcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecc-----
Confidence            99999999999999999999999999999999999999999999 899999999999999999999988877652     


Q ss_pred             CCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          140 DDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       140 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                            | ...|++++|.|+|.-+++|++|+++++||++.
T Consensus       228 ------h-esDINsv~ffP~G~afatGSDD~tcRlyDlRa  260 (343)
T KOG0286|consen  228 ------H-ESDINSVRFFPSGDAFATGSDDATCRLYDLRA  260 (343)
T ss_pred             ------c-ccccceEEEccCCCeeeecCCCceeEEEeecC
Confidence                  2 78899999999999999999999999999974

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-32  Score=177.36  Aligned_cols=165  Identities=19%  Similarity=0.310  Sum_probs=140.6

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeCC---------Ccee--eec--ccCceeEEEEeeC--
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQS---------TAPC--VHG--HKKAVSYVKFLSN--   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~---------~~~~--~~~--~~~~i~~~~~~~~--   64 (179)
                      |.|+++++||+.+++..+.|. |...|.+++|+|+..+++...+.         +.+.  +..  +.+.|+|++|+|+  
T Consensus        82 swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~  161 (315)
T KOG0279|consen   82 SWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNES  161 (315)
T ss_pred             cccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCC
Confidence            579999999999998888885 88999999999999665555411         2222  222  3778999999998  


Q ss_pred             -CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCc
Q 038439           65 -DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTD  143 (179)
Q Consensus        65 -~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~  143 (179)
                       ..|++++.|++|++||+++.+....+.+|.+.++.++++|||..+++|+.||.+.+||++.++.+..+..         
T Consensus       162 ~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a---------  232 (315)
T KOG0279|consen  162 NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA---------  232 (315)
T ss_pred             CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccC---------
Confidence             6899999999999999999999999999999999999999999999999999999999999998766553         


Q ss_pred             ccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          144 EDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       144 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                          ...|.+++|+|+.-+|+.+... .|+|||+.+
T Consensus       233 ----~~~v~sl~fspnrywL~~at~~-sIkIwdl~~  263 (315)
T KOG0279|consen  233 ----FDIVNSLCFSPNRYWLCAATAT-SIKIWDLES  263 (315)
T ss_pred             ----CCeEeeEEecCCceeEeeccCC-ceEEEeccc
Confidence                6789999999988777766655 599999864

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.8e-33  Score=185.75  Aligned_cols=177  Identities=21%  Similarity=0.288  Sum_probs=146.0

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee---eecccCceeEEEEeeC-
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC---VHGHKKAVSYVKFLSN-   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~---~~~~~~~i~~~~~~~~-   64 (179)
                      |-|.++++||+.+..+.++.. |+..|.|++|+|||. .+++|           .+++++   +.+|.+.|++++|.|- 
T Consensus       134 sGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk-~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~h  212 (480)
T KOG0271|consen  134 SGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGK-KIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLH  212 (480)
T ss_pred             CCCceEEeeccCCCCcceeecCCccEEEEEEECCCcc-hhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccc
Confidence            458899999999999999886 899999999999994 55555           466777   9999999999999874 


Q ss_pred             -----CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCC--
Q 038439           65 -----DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSP--  137 (179)
Q Consensus        65 -----~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~--  137 (179)
                           ++|++++.||.++|||+..++++..+.+|..+|+|+.|--+| +|++|+.|++|++|+...|.....+.-..+  
T Consensus       213 l~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwv  291 (480)
T KOG0271|consen  213 LVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWV  291 (480)
T ss_pred             cCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchhe
Confidence                 789999999999999999999999999999999999997555 899999999999999877654433221111  


Q ss_pred             -----------------------------------------------------------------CCCCCcccCCcceEE
Q 038439          138 -----------------------------------------------------------------DMDDTDEDAGSYFIS  152 (179)
Q Consensus       138 -----------------------------------------------------------------~~~~~~~~~~~~~i~  152 (179)
                                                                                       .........|...|+
T Consensus       292 N~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn  371 (480)
T KOG0271|consen  292 NHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVN  371 (480)
T ss_pred             eeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhee
Confidence                                                                             001112223477899


Q ss_pred             EEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          153 AVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       153 ~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      .+.|+||++++++++.|..|++||-++
T Consensus       372 ~V~fSPd~r~IASaSFDkSVkLW~g~t  398 (480)
T KOG0271|consen  372 HVSFSPDGRYIASASFDKSVKLWDGRT  398 (480)
T ss_pred             eEEECCCccEEEEeecccceeeeeCCC
Confidence            999999999999999999999999754

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1e-31  Score=180.12  Aligned_cols=162  Identities=23%  Similarity=0.396  Sum_probs=143.4

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-------------------------------------
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-------------------------------------   42 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-------------------------------------   42 (179)
                      |.||+|+|||+..++++..+. |..+|+|++|--+|  ++.+|                                     
T Consensus       224 skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~  301 (480)
T KOG0271|consen  224 SKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYV  301 (480)
T ss_pred             cCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhh
Confidence            579999999999999888875 89999999998665  55554                                     


Q ss_pred             -----------------------------------------------------CCCcee--eecccCceeEEEEeeC-Ce
Q 038439           43 -----------------------------------------------------QSTAPC--VHGHKKAVSYVKFLSN-DE   66 (179)
Q Consensus        43 -----------------------------------------------------~~~~~~--~~~~~~~i~~~~~~~~-~~   66 (179)
                                                                           ...+++  +.+|...|+.+.|+|| .+
T Consensus       302 LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~  381 (480)
T KOG0271|consen  302 LRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRY  381 (480)
T ss_pred             hhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccE
Confidence                                                                 233444  6789999999999999 99


Q ss_pred             EEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccC
Q 038439           67 LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDA  146 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  146 (179)
                      ++++|.|+.|++||-++|+.+.+|++|-..|+.++|+.|.+++++|+.|.++++||+++.+....+.  .         |
T Consensus       382 IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp--G---------h  450 (480)
T KOG0271|consen  382 IASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP--G---------H  450 (480)
T ss_pred             EEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCC--C---------C
Confidence            9999999999999999999999999999999999999999999999999999999999987765433  2         2


Q ss_pred             CcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439          147 GSYFISAVCWKSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       147 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  176 (179)
                       ...|.++.|+|||..+++|+.|..+++|.
T Consensus       451 -~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  451 -ADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             -CceEEEEEecCCCceeecCCCceEEEeec
Confidence             77899999999999999999999999994

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.98  E-value=1.9e-30  Score=165.41  Aligned_cols=177  Identities=18%  Similarity=0.202  Sum_probs=143.5

Q ss_pred             CCCccEEEEEcCCceeEEeecCC-CceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-C
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMK-ANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-D   65 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~   65 (179)
                      |.|.+|++|...+|.+..+++|. +.|+.+...|++..+.++|           ....|+  +.+|++.|+.+.|..+ +
T Consensus        17 ~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgr   96 (311)
T KOG0315|consen   17 GYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGR   96 (311)
T ss_pred             cCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCe
Confidence            67999999999999999999975 5799999999997666666           233355  9999999999999999 9


Q ss_pred             eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCC--------
Q 038439           66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSP--------  137 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~--------  137 (179)
                      .+++|++||+++|||++...+.+.++ +.++|+++..+|+...|++|..+|.|++||+.+.........+..        
T Consensus        97 WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v  175 (311)
T KOG0315|consen   97 WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTV  175 (311)
T ss_pred             EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEE
Confidence            99999999999999999976666665 679999999999999999999999999999986532221111100        


Q ss_pred             -----------------------------CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          138 -----------------------------DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       138 -----------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                                                   .........|...+..+.+||++++|++++.|.+++||+++
T Consensus       176 ~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~  245 (311)
T KOG0315|consen  176 MPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTD  245 (311)
T ss_pred             cCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecC
Confidence                                         01111122347788899999999999999999999999875

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.97  E-value=5.9e-30  Score=175.35  Aligned_cols=166  Identities=17%  Similarity=0.296  Sum_probs=144.1

Q ss_pred             CCCccEEEEEcCCceeEEee-cCCCceeEEEEcCCCCeEEEEe-------------------------------------
Q 038439            1 MAYGKVKVWCTRQEASVLNI-DMKANICCVKYNPGSSNYIAKY-------------------------------------   42 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~-------------------------------------   42 (179)
                      +.||.+++|+.. +.++.++ .|++||.++.|+..|.++++.+                                     
T Consensus       254 ~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F  332 (524)
T KOG0273|consen  254 SEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEF  332 (524)
T ss_pred             ecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceE
Confidence            368999999955 5556666 4999999999999997777776                                     


Q ss_pred             --------------CCCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeC
Q 038439           43 --------------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVN  105 (179)
Q Consensus        43 --------------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  105 (179)
                                    ...+|+  +.+|.++|.++.|.|. .+|+++|.|++++||..........+..|...|..+.|+|.
T Consensus       333 ~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~  412 (524)
T KOG0273|consen  333 ATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPT  412 (524)
T ss_pred             eecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCC
Confidence                          233455  7889999999999999 99999999999999999988889999999999999999996


Q ss_pred             ---------CCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439          106 ---------SEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       106 ---------~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  176 (179)
                               +..+++++.|++|++||+..+.++..+.           . |..+|++++|+|+|+++++|+.||.|++|+
T Consensus       413 g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~-----------k-H~~pVysvafS~~g~ylAsGs~dg~V~iws  480 (524)
T KOG0273|consen  413 GPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM-----------K-HQEPVYSVAFSPNGRYLASGSLDGCVHIWS  480 (524)
T ss_pred             CCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec-----------c-CCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence                     4568999999999999999999987753           1 288999999999999999999999999999


Q ss_pred             ecC
Q 038439          177 LAA  179 (179)
Q Consensus       177 ~~~  179 (179)
                      +++
T Consensus       481 ~~~  483 (524)
T KOG0273|consen  481 TKT  483 (524)
T ss_pred             ccc
Confidence            763

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.97  E-value=3.9e-30  Score=185.06  Aligned_cols=147  Identities=24%  Similarity=0.373  Sum_probs=133.7

Q ss_pred             cCCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcce
Q 038439           21 DMKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPV   87 (179)
Q Consensus        21 ~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~   87 (179)
                      .|.++|..+.|+|+.+.++.++          .+..++  +++|..+|+.+.|+|- -+|+|+|.|++.++|......++
T Consensus       449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~Pl  528 (707)
T KOG0263|consen  449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPL  528 (707)
T ss_pred             cCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCch
Confidence            5889999999999997777776          333444  8899999999999999 88999999999999999999999


Q ss_pred             eeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEe
Q 038439           88 RTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN  167 (179)
Q Consensus        88 ~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  167 (179)
                      +.+.+|.+.|.|++|+|+..|+++|+.|.+|++||..+|..+..+.           +| ..+|.+++|+|+|++|++|+
T Consensus       529 RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-----------GH-~~~V~al~~Sp~Gr~LaSg~  596 (707)
T KOG0263|consen  529 RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-----------GH-KGPVTALAFSPCGRYLASGD  596 (707)
T ss_pred             hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-----------CC-CCceEEEEEcCCCceEeecc
Confidence            9999999999999999999999999999999999999998876653           33 88999999999999999999


Q ss_pred             CCCcEEEEeecC
Q 038439          168 SQGTIKVLVLAA  179 (179)
Q Consensus       168 ~dg~i~iwd~~~  179 (179)
                      .||.|++||+.+
T Consensus       597 ed~~I~iWDl~~  608 (707)
T KOG0263|consen  597 EDGLIKIWDLAN  608 (707)
T ss_pred             cCCcEEEEEcCC
Confidence            999999999864

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=8e-29  Score=178.73  Aligned_cols=168  Identities=19%  Similarity=0.333  Sum_probs=142.6

Q ss_pred             CCCccEEEEEcCCce--eEEee-cCCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC
Q 038439            1 MAYGKVKVWCTRQEA--SVLNI-DMKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~   64 (179)
                      +.|+.+++|+..+.+  .+..+ .|...|.+++|+|++..++.++           ..+..+  +.+|...|++++|+|+
T Consensus       178 ~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~  257 (456)
T KOG0266|consen  178 SSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPD  257 (456)
T ss_pred             cCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCC
Confidence            368999999997776  55555 5889999999999996444444           222344  8899999999999999


Q ss_pred             -CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcc--ccccccCCCCCCC
Q 038439           65 -DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKP--VTWHRFSSPDMDD  141 (179)
Q Consensus        65 -~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~--~~~~~~~~~~~~~  141 (179)
                       +++++|+.|++|++||+++++++..+..|...|.+++|++++++|++++.|+.|++||+.++..  ........     
T Consensus       258 g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~-----  332 (456)
T KOG0266|consen  258 GNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAE-----  332 (456)
T ss_pred             CCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCC-----
Confidence             8999999999999999999999999999999999999999999999999999999999999883  33322111     


Q ss_pred             CcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          142 TDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       142 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                          ... .++.++|+|++.++++++.|+.+++||++
T Consensus       333 ----~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~  364 (456)
T KOG0266|consen  333 ----NSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLR  364 (456)
T ss_pred             ----CCC-ceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence                003 79999999999999999999999999986

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.4e-28  Score=158.35  Aligned_cols=166  Identities=17%  Similarity=0.312  Sum_probs=138.0

Q ss_pred             CCCccEEEEEcCC---ceeEEeec--CCCceeEEEEcCCCCeEEEEe-------------CCCcee--eecccCceeEEE
Q 038439            1 MAYGKVKVWCTRQ---EASVLNID--MKANICCVKYNPGSSNYIAKY-------------QSTAPC--VHGHKKAVSYVK   60 (179)
Q Consensus         1 ~~d~~i~vwd~~~---~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~--~~~~~~~i~~~~   60 (179)
                      |.|+.|++|+...   ..+...+.  |+..|++++|+|.|+ +++++             ...+++  +.+|+..|.|++
T Consensus        34 g~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~-~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Va  112 (312)
T KOG0645|consen   34 GTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR-YLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVA  112 (312)
T ss_pred             cCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc-EEEEeeccceEEEeecCCCceeEEeeeeccccceeEEE
Confidence            5799999999885   34444443  889999999999995 66665             233555  899999999999


Q ss_pred             EeeC-CeEEEecCCCcEEEEecCCC---cceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCC-CccccccccC
Q 038439           61 FLSN-DELASASTDSTLRLWDVKEN---LPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEI-SKPVTWHRFS  135 (179)
Q Consensus        61 ~~~~-~~l~~~~~d~~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~-~~~~~~~~~~  135 (179)
                      |+++ ++|++++.|+.|.||.+...   ++...+..|.+.|..+.|+|...+|++++.|++|++|+-.. ..-.....+.
T Consensus       113 ws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~  192 (312)
T KOG0645|consen  113 WSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD  192 (312)
T ss_pred             EcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEec
Confidence            9999 99999999999999998753   56677889999999999999999999999999999998873 3333333443


Q ss_pred             CCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          136 SPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       136 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      .+          ...|++++|++.|..|++++.|++++||-+
T Consensus       193 g~----------~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~  224 (312)
T KOG0645|consen  193 GH----------ENTVWSLAFDNIGSRLVSCSDDGTVSIWRL  224 (312)
T ss_pred             Cc----------cceEEEEEecCCCceEEEecCCcceEeeee
Confidence            33          568999999999999999999999999974

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.2e-29  Score=178.01  Aligned_cols=166  Identities=19%  Similarity=0.281  Sum_probs=149.9

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC--
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN--   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~--   64 (179)
                      |+|..|+||++++++.++.++ |.+-|++++.||..+.++.++           +.-.+.  +.+|+.-|.+++|.|.  
T Consensus        74 sDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~  153 (794)
T KOG0276|consen   74 SDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP  153 (794)
T ss_pred             cCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc
Confidence            689999999999999999997 889999999999998888877           112222  8899999999999998  


Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCC--CEEEEeccCCcEEEEEcCCCccccccccCCCCCCCC
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNS--EYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDT  142 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~  142 (179)
                      +.++++|.|++|++|.+.+..+..++++|...|+++.+-+-|  .++++|+.|..++|||.++..++++++-        
T Consensus       154 ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG--------  225 (794)
T KOG0276|consen  154 NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG--------  225 (794)
T ss_pred             cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc--------
Confidence            999999999999999999999999999999999999998854  5899999999999999999999987652        


Q ss_pred             cccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          143 DEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                         | ...|..++|+|.-..+++|+.||+++||+-.
T Consensus       226 ---H-t~Nvs~v~fhp~lpiiisgsEDGTvriWhs~  257 (794)
T KOG0276|consen  226 ---H-TNNVSFVFFHPELPIIISGSEDGTVRIWNSK  257 (794)
T ss_pred             ---c-cccceEEEecCCCcEEEEecCCccEEEecCc
Confidence               2 7789999999999999999999999999854

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.97  E-value=1.5e-28  Score=158.71  Aligned_cols=166  Identities=17%  Similarity=0.182  Sum_probs=140.0

Q ss_pred             CCCccEEEEEcCC-----ceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEe
Q 038439            1 MAYGKVKVWCTRQ-----EASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFL   62 (179)
Q Consensus         1 ~~d~~i~vwd~~~-----~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~   62 (179)
                      +.|.++.+|++..     |.+++.+. |...|..+..+++|+..++++          ..+++.  +.+|...|.+++|+
T Consensus        35 srDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s  114 (315)
T KOG0279|consen   35 SRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFS  114 (315)
T ss_pred             ccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEec
Confidence            4689999998754     55677775 788999999999997666666          344454  89999999999999


Q ss_pred             eC-CeEEEecCCCcEEEEecCCCcceeeecCC--CCCeEEEEEeeC--CCEEEEeccCCcEEEEEcCCCccccccccCCC
Q 038439           63 SN-DELASASTDSTLRLWDVKENLPVRTFRGH--MNEKNFVGLTVN--SEYIACGSESNEVYVYHKEISKPVTWHRFSSP  137 (179)
Q Consensus        63 ~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~--~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~  137 (179)
                      ++ +++++||.|.+|++|+.-. .+..++..+  ...|.++.|+|+  ..+|++++.|++|++||+++.+....+.-   
T Consensus       115 ~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~g---  190 (315)
T KOG0279|consen  115 TDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIG---  190 (315)
T ss_pred             CCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccc---
Confidence            99 9999999999999999874 445555443  678999999998  67899999999999999998887665432   


Q ss_pred             CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          138 DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       138 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                              | .+.++.+.++|||...++|+.||.+.+||++.
T Consensus       191 --------h-~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~  223 (315)
T KOG0279|consen  191 --------H-SGYVNTVTVSPDGSLCASGGKDGEAMLWDLNE  223 (315)
T ss_pred             --------c-cccEEEEEECCCCCEEecCCCCceEEEEEccC
Confidence                    2 78899999999999999999999999999973

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.97  E-value=1.7e-28  Score=159.53  Aligned_cols=165  Identities=17%  Similarity=0.282  Sum_probs=144.3

Q ss_pred             CCccEEEEEcCCc------eeEEee-cCCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEe
Q 038439            2 AYGKVKVWCTRQE------ASVLNI-DMKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFL   62 (179)
Q Consensus         2 ~d~~i~vwd~~~~------~~~~~~-~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~   62 (179)
                      =|+...||++.+.      +..+++ .|.+-+.++.|-+|+ +++..+          .+++.+  +.+|.+.|.++.++
T Consensus       117 LdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~  195 (343)
T KOG0286|consen  117 LDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLS  195 (343)
T ss_pred             cCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecC
Confidence            4788899998855      223334 388999999999987 555544          556666  99999999999999


Q ss_pred             e-C-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCC
Q 038439           63 S-N-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMD  140 (179)
Q Consensus        63 ~-~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~  140 (179)
                      | + +.+++|+-|+..++||++.+.++++|.+|.+.|+++.|.|+|.-|++|+.|++.++||+|..+.+..+.....   
T Consensus       196 p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~---  272 (343)
T KOG0286|consen  196 PSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSI---  272 (343)
T ss_pred             CCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcc---
Confidence            9 5 9999999999999999999999999999999999999999999999999999999999999988877764332   


Q ss_pred             CCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          141 DTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       141 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                             ..+|++++|+..|++|++|..|.++.+||.
T Consensus       273 -------~~gitSv~FS~SGRlLfagy~d~~c~vWDt  302 (343)
T KOG0286|consen  273 -------ICGITSVAFSKSGRLLFAGYDDFTCNVWDT  302 (343)
T ss_pred             -------cCCceeEEEcccccEEEeeecCCceeEeec
Confidence                   668999999999999999999999999995

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.8e-28  Score=163.39  Aligned_cols=165  Identities=19%  Similarity=0.275  Sum_probs=147.4

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC--
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN--   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~--   64 (179)
                      |.|.+|+.|++.++.+++++. |...|..++.+.|| .+++++           .++++.  +++|+.+|.|++|.|.  
T Consensus       212 srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~  290 (406)
T KOG0295|consen  212 SRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESS  290 (406)
T ss_pred             ccccceeEEecccceeEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhhhccccceEEEEeccccc
Confidence            579999999999999999996 78899999999999 677766           334333  8889999999999763  


Q ss_pred             --------------CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccc
Q 038439           65 --------------DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVT  130 (179)
Q Consensus        65 --------------~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~  130 (179)
                                    ..+.+++.|++|++||+.++.++.++.+|...|+.++|+|.|+||+++..|+++++||+++.++..
T Consensus       291 ~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk  370 (406)
T KOG0295|consen  291 YPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMK  370 (406)
T ss_pred             CcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeee
Confidence                          268899999999999999999999999999999999999999999999999999999999999887


Q ss_pred             ccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          131 WHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .++.  +          ...++++.|+.+..++++|+-|-.+++|..+
T Consensus       371 ~~~a--h----------~hfvt~lDfh~~~p~VvTGsVdqt~KvwEcr  406 (406)
T KOG0295|consen  371 TLEA--H----------EHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  406 (406)
T ss_pred             ccCC--C----------cceeEEEecCCCCceEEeccccceeeeeecC
Confidence            7653  2          7789999999999999999999999999753

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.97  E-value=2.2e-28  Score=156.00  Aligned_cols=168  Identities=18%  Similarity=0.264  Sum_probs=141.5

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCCCcee-------------eecccCceeEEEEeeC-Ce
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPC-------------VHGHKKAVSYVKFLSN-DE   66 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~~~~~~~~-~~   66 (179)
                      |+||+++|||++...+.+.+++.++|+++..+|+...|+++.+.+..-             +..-...|.++...|+ ..
T Consensus       102 seDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsm  181 (311)
T KOG0315|consen  102 SEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSM  181 (311)
T ss_pred             CCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcE
Confidence            689999999999999999999999999999999987777765322211             3444568999999999 89


Q ss_pred             EEEecCCCcEEEEecCCC------cceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCC
Q 038439           67 LASASTDSTLRLWDVKEN------LPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMD  140 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~  140 (179)
                      ++.+...|...+|++...      +++..++.|..-+..+.++|++++|++++.|.+++||+.++. ......+..+   
T Consensus       182 l~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh---  257 (311)
T KOG0315|consen  182 LAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGH---  257 (311)
T ss_pred             EEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecC---
Confidence            999999999999998653      456678889999999999999999999999999999999887 3333333322   


Q ss_pred             CCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          141 DTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       141 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                             ...++..+||.+|+||++++.|+.+++|++++
T Consensus       258 -------~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~  289 (311)
T KOG0315|consen  258 -------QRWVWDCAFSADGEYLVTASSDHTARLWDLSA  289 (311)
T ss_pred             -------CceEEeeeeccCccEEEecCCCCceeeccccc
Confidence                   67999999999999999999999999999863

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.96  E-value=2.9e-29  Score=169.33  Aligned_cols=164  Identities=18%  Similarity=0.267  Sum_probs=137.3

Q ss_pred             CCccEEEEEcCCceeEEee-cCCCceeEEEEcCCCCeEEEEeCCCcee------------eec-ccCceeEEEEeeC-Ce
Q 038439            2 AYGKVKVWCTRQEASVLNI-DMKANICCVKYNPGSSNYIAKYQSTAPC------------VHG-HKKAVSYVKFLSN-DE   66 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~------------~~~-~~~~i~~~~~~~~-~~   66 (179)
                      +-|...||+..+..-...+ .|.++|+++.|++++. .+++|+.+..+            +.+ |...|.+++|+|+ ..
T Consensus       116 ~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~-wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDsk  194 (464)
T KOG0284|consen  116 QSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGT-WMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSK  194 (464)
T ss_pred             ccccEEEecCceeeHHHHhhhhcccceeEEEccCCC-EEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCce
Confidence            4577788886433222222 3899999999999994 55555222222            344 4589999999999 99


Q ss_pred             EEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccC
Q 038439           67 LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDA  146 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  146 (179)
                      |+++|.|++|+|||....+....+.+|.-.|.+++|+|.-.++++|+.|..|++||.+++.++.++..            
T Consensus       195 F~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~------------  262 (464)
T KOG0284|consen  195 FLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHG------------  262 (464)
T ss_pred             eEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhh------------
Confidence            99999999999999999888888899999999999999999999999999999999999999877542            


Q ss_pred             CcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          147 GSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       147 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      |+..|..+.|+|++++|++++.|..+++||++
T Consensus       263 HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR  294 (464)
T KOG0284|consen  263 HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR  294 (464)
T ss_pred             ccceEEEEEEcCCCCeeEEccCCceEEEEehh
Confidence            28889999999999999999999999999987

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=2.7e-28  Score=156.96  Aligned_cols=176  Identities=12%  Similarity=0.182  Sum_probs=147.7

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe----------------------CCCcee--eecccCce
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY----------------------QSTAPC--VHGHKKAV   56 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------------------~~~~~~--~~~~~~~i   56 (179)
                      |.|.+++|||+++|+++..+..+.+|..+.|+++|..++++.                      ...+|+  +..+...+
T Consensus        71 SAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ski  150 (327)
T KOG0643|consen   71 SADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKI  150 (327)
T ss_pred             cccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccce
Confidence            579999999999999999999999999999999997766665                      133444  67778889


Q ss_pred             eEEEEeeC-CeEEEecCCCcEEEEecCCCc-ceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccccc
Q 038439           57 SYVKFLSN-DELASASTDSTLRLWDVKENL-PVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF  134 (179)
Q Consensus        57 ~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~  134 (179)
                      +.+-|.|- ..|++|..||.|.+||+++++ .+..-+.|...|+.+.++||..++++++.|.+-++||.++-+.+..+..
T Consensus       151 t~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t  230 (327)
T KOG0643|consen  151 TSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT  230 (327)
T ss_pred             eeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee
Confidence            99999999 999999999999999999974 4455677999999999999999999999999999999998776666543


Q ss_pred             CCC--------------------------------------------CCCCCcccCCcceEEEEEEccCCCeEEEEeCCC
Q 038439          135 SSP--------------------------------------------DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG  170 (179)
Q Consensus       135 ~~~--------------------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  170 (179)
                      ..+                                            +......+ |-++|++++|+|+|+..++|+.||
T Consensus       231 e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkG-HFGPINsvAfhPdGksYsSGGEDG  309 (327)
T KOG0643|consen  231 ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKG-HFGPINSVAFHPDGKSYSSGGEDG  309 (327)
T ss_pred             cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccc-cccCcceeEECCCCcccccCCCCc
Confidence            333                                            01111233 488999999999999999999999


Q ss_pred             cEEEEee
Q 038439          171 TIKVLVL  177 (179)
Q Consensus       171 ~i~iwd~  177 (179)
                      .|++.-.
T Consensus       310 ~VR~h~F  316 (327)
T KOG0643|consen  310 YVRLHHF  316 (327)
T ss_pred             eEEEEEe
Confidence            9998754

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.96  E-value=2.7e-28  Score=162.74  Aligned_cols=165  Identities=19%  Similarity=0.275  Sum_probs=147.4

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-Ce
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DE   66 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~   66 (179)
                      |.|++|+|||+.++++..++. |...|..+++|+-.++++.+|          ...+.+  +.+|-..|.|++.+|. ..
T Consensus       170 s~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldv  249 (460)
T KOG0285|consen  170 SADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDV  249 (460)
T ss_pred             CCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEecccccee
Confidence            579999999999999999887 889999999999999999998          223333  7789999999999999 99


Q ss_pred             EEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccC
Q 038439           67 LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDA  146 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  146 (179)
                      |++|+.|.++|+||+++...+..+.+|...|..+.+.|-...+++|+.|++|++||++.++-......            
T Consensus       250 l~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~------------  317 (460)
T KOG0285|consen  250 LVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTH------------  317 (460)
T ss_pred             EEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeec------------
Confidence            99999999999999999999999999999999999999888899999999999999999987765432            


Q ss_pred             CcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          147 GSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       147 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      |...+.+++.+|....+++++.|. |+-|++.
T Consensus       318 hkksvral~lhP~e~~fASas~dn-ik~w~~p  348 (460)
T KOG0285|consen  318 HKKSVRALCLHPKENLFASASPDN-IKQWKLP  348 (460)
T ss_pred             ccceeeEEecCCchhhhhccCCcc-ceeccCC
Confidence            377899999999999999999884 8888764

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.96  E-value=1.3e-27  Score=165.93  Aligned_cols=168  Identities=24%  Similarity=0.353  Sum_probs=145.5

Q ss_pred             CccEEEEEcCCceeEE--eec-CCCceeEEEEcCCCCeEEEEe------------CCCcee--eecccCceeEEEEeeC-
Q 038439            3 YGKVKVWCTRQEASVL--NID-MKANICCVKYNPGSSNYIAKY------------QSTAPC--VHGHKKAVSYVKFLSN-   64 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~--~~~-~~~~v~~~~~~~~~~~~~~~~------------~~~~~~--~~~~~~~i~~~~~~~~-   64 (179)
                      .|+|+|||....+.+.  +++ ..++|..++|++++++++++|            +++..+  +.+|...|+++.|-|. 
T Consensus        80 sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsR  159 (603)
T KOG0318|consen   80 SGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSR  159 (603)
T ss_pred             cCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCC
Confidence            4899999987644333  333 568999999999999999999            455555  8899999999999999 


Q ss_pred             -CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCc
Q 038439           65 -DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTD  143 (179)
Q Consensus        65 -~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~  143 (179)
                       =.++|+++|.+|.+|+=...+-..++..|...|+++.|+|||.+|++.+.||++.+||-.+++.+..+.-.        
T Consensus       160 PfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~--------  231 (603)
T KOG0318|consen  160 PFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDS--------  231 (603)
T ss_pred             ceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCC--------
Confidence             56899999999999997777777788889999999999999999999999999999999999988776531        


Q ss_pred             ccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          144 EDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       144 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                       ..|.+.|..++|+||+..+++++.|.+++|||+.+
T Consensus       232 -~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~  266 (603)
T KOG0318|consen  232 -DAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST  266 (603)
T ss_pred             -CCccccEEEEEECCCCceEEEecCCceEEEEEeec
Confidence             33488999999999999999999999999999864

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.96  E-value=3.1e-27  Score=162.14  Aligned_cols=165  Identities=25%  Similarity=0.362  Sum_probs=146.0

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC---
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN---   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~---   64 (179)
                      +.|+.|+|+.+....++.++. |.++|.++.|+|.+..|+.++          ......  +.+|...|..+.|+|+   
T Consensus       336 ~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v  415 (524)
T KOG0273|consen  336 STDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPV  415 (524)
T ss_pred             CCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCc
Confidence            468999999999888888875 899999999999995555554          122222  8889999999999986   


Q ss_pred             -------CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCC
Q 038439           65 -------DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSP  137 (179)
Q Consensus        65 -------~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~  137 (179)
                             ..+++++.|++|++||+..+.++..|..|..+|++++|+|+|+++++|+.||.|.+|+.++++.++.+.-   
T Consensus       416 ~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~---  492 (524)
T KOG0273|consen  416 TSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG---  492 (524)
T ss_pred             cCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC---
Confidence                   2589999999999999999999999999999999999999999999999999999999999999887764   


Q ss_pred             CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          138 DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       138 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                                ...|..++|+.+|++|..+-.|+.+++.|++
T Consensus       493 ----------~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  493 ----------TGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             ----------CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence                      5679999999999999999999999999986

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=9.6e-28  Score=172.07  Aligned_cols=163  Identities=19%  Similarity=0.250  Sum_probs=143.0

Q ss_pred             CCCccEEEEEcCCce-----eEEe-----ecCCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCcee
Q 038439            1 MAYGKVKVWCTRQEA-----SVLN-----IDMKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVS   57 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~-----~~~~-----~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~   57 (179)
                      |.|+++++|++...+     ....     ..|...|++++++|+. .++++|           ...+.+  +.+|+..|.
T Consensus       431 S~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw  509 (775)
T KOG0319|consen  431 SQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND-KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVW  509 (775)
T ss_pred             cCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC-ceEEecccccceeeecccCceEEEEeeCCccceE
Confidence            689999999987622     1111     1388999999999998 788887           222223  899999999


Q ss_pred             EEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCC
Q 038439           58 YVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSS  136 (179)
Q Consensus        58 ~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~  136 (179)
                      |+.|+|. ..++|+|.|++|+||.+.+..++.++.+|...|..+.|-.+|+.|++++.||.+++|++++++++.++..  
T Consensus       510 ~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~--  587 (775)
T KOG0319|consen  510 CVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDA--  587 (775)
T ss_pred             EEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhh--
Confidence            9999999 9999999999999999999999999999999999999999999999999999999999999999877542  


Q ss_pred             CCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439          137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       137 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  176 (179)
                                |...|++++-+|...++++|+.||.|.+|.
T Consensus       588 ----------H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  588 ----------HNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             ----------ccceeEEEeecCccceeEecCCCeEEEEee
Confidence                      288999999999999999999999999995

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=4.1e-27  Score=169.52  Aligned_cols=174  Identities=13%  Similarity=0.226  Sum_probs=146.8

Q ss_pred             CccEEEEEcCCceeEEeecC-CCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-CeE
Q 038439            3 YGKVKVWCTRQEASVLNIDM-KANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-DEL   67 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~~l   67 (179)
                      .|...+|.+....+++.+.. ..+|..++|+..|+.+...+           .....+  .++|...+++++++|| +++
T Consensus       286 sG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~i  365 (893)
T KOG0291|consen  286 SGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLI  365 (893)
T ss_pred             CCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEE
Confidence            46677899999999998884 58899999999995444443           233333  6789999999999999 999


Q ss_pred             EEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCC----------
Q 038439           68 ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSP----------  137 (179)
Q Consensus        68 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~----------  137 (179)
                      ++|+.|+.|+|||.+++-+..+|..|++.|+.+.|+..|+.+++.+.||+|+.||+...+...++..+.+          
T Consensus       366 aTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~  445 (893)
T KOG0291|consen  366 ATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP  445 (893)
T ss_pred             EeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC
Confidence            9999999999999999999999999999999999999999999999999999999987766555543333          


Q ss_pred             -----------------------CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          138 -----------------------DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       138 -----------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                                             .......+| +++|.+++|+|.++.|++++.|.+|++||+
T Consensus       446 sGelV~AG~~d~F~IfvWS~qTGqllDiLsGH-EgPVs~l~f~~~~~~LaS~SWDkTVRiW~i  507 (893)
T KOG0291|consen  446 SGELVCAGAQDSFEIFVWSVQTGQLLDILSGH-EGPVSGLSFSPDGSLLASGSWDKTVRIWDI  507 (893)
T ss_pred             CCCEEEeeccceEEEEEEEeecCeeeehhcCC-CCcceeeEEccccCeEEeccccceEEEEEe
Confidence                                   122233455 899999999999999999999999999996

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=3.7e-27  Score=169.76  Aligned_cols=178  Identities=19%  Similarity=0.298  Sum_probs=143.6

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-------------------------------------
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-------------------------------------   42 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-------------------------------------   42 (179)
                      ++||+|+|||..++-|..++. |++.|+.+.|+..+..++.++                                     
T Consensus       369 ~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe  448 (893)
T KOG0291|consen  369 AEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE  448 (893)
T ss_pred             cCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCC
Confidence            579999999999999999995 899999999999986666665                                     


Q ss_pred             -----------------CCCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCC-cceeeecCCCCCeEEEE
Q 038439           43 -----------------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKEN-LPVRTFRGHMNEKNFVG  101 (179)
Q Consensus        43 -----------------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~  101 (179)
                                       .+++.+  +.+|+++|.++.|+|. ..|+++|.|.+||+||+-.. ..+.++. +.+.+..++
T Consensus       449 lV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vs  527 (893)
T KOG0291|consen  449 LVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVS  527 (893)
T ss_pred             EEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEE
Confidence                             667777  8999999999999999 99999999999999998654 3445554 577889999


Q ss_pred             EeeCCCEEEEeccCCcEEEEEcCCCccccccccCCC--------CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEE
Q 038439          102 LTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSP--------DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIK  173 (179)
Q Consensus       102 ~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  173 (179)
                      |+|+|+.++++..||+|.+||.+.+.....+.-...        +.............+.+++++||..+++|+..+.|+
T Consensus       528 frPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iC  607 (893)
T KOG0291|consen  528 FRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSIC  607 (893)
T ss_pred             EcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEE
Confidence            999999999999999999999987655433321110        001111111145789999999999999999999999


Q ss_pred             EEeecC
Q 038439          174 VLVLAA  179 (179)
Q Consensus       174 iwd~~~  179 (179)
                      +|++++
T Consensus       608 iY~v~~  613 (893)
T KOG0291|consen  608 IYDVPE  613 (893)
T ss_pred             EEECch
Confidence            999864

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=1.1e-26  Score=167.78  Aligned_cols=169  Identities=17%  Similarity=0.274  Sum_probs=141.1

Q ss_pred             CCCccEEEEEc-CCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-
Q 038439            1 MAYGKVKVWCT-RQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-   64 (179)
Q Consensus         1 ~~d~~i~vwd~-~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-   64 (179)
                      +.|++|+|||+ ..+..++++. |...|++++|+|++ +++++|           +.++++  +.+|...|++++|+++ 
T Consensus       222 s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~  300 (456)
T KOG0266|consen  222 SDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDG  300 (456)
T ss_pred             cCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCC
Confidence            57999999999 4557888885 99999999999999 666666           456666  9999999999999999 


Q ss_pred             CeEEEecCCCcEEEEecCCCc--ceeeecCCCCC--eEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCC
Q 038439           65 DELASASTDSTLRLWDVKENL--PVRTFRGHMNE--KNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMD  140 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~  140 (179)
                      ++|++++.|+.|++||+.++.  ++..+..+...  +.++.|+|++.+++++..|+.+++||++.+.....+......  
T Consensus       301 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~--  378 (456)
T KOG0266|consen  301 NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL--  378 (456)
T ss_pred             CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCc--
Confidence            999999999999999999988  45666665544  899999999999999999999999999988877665432110  


Q ss_pred             CCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          141 DTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       141 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                             ...+.+...++.+.++++|+.|+.|++||+.+
T Consensus       379 -------~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s  410 (456)
T KOG0266|consen  379 -------VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS  410 (456)
T ss_pred             -------ceeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence                   12455566688999999999999999999864

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=9.2e-28  Score=160.07  Aligned_cols=179  Identities=18%  Similarity=0.224  Sum_probs=146.3

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeCC-----------Ccee--eecccCceeEEEEeeC-C
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQS-----------TAPC--VHGHKKAVSYVKFLSN-D   65 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~-----------~~~~--~~~~~~~i~~~~~~~~-~   65 (179)
                      ++|++|++||+.+++++..+. |...+.+++|+..|..++.+..+           .+++  +.+|...|.++.|-|. .
T Consensus       127 s~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd  206 (406)
T KOG0295|consen  127 SEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGD  206 (406)
T ss_pred             cCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCC
Confidence            479999999999999988886 88889999999999555555411           2233  6789999999999999 9


Q ss_pred             eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCC--------
Q 038439           66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSP--------  137 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~--------  137 (179)
                      ++++++.|.+|+.|++.++.++.++.+|...|+.++.+.||.++++++.|..|++|-+.++++...++.-.+        
T Consensus       207 ~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wa  286 (406)
T KOG0295|consen  207 HILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWA  286 (406)
T ss_pred             eeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEec
Confidence            999999999999999999999999999999999999999999999999999999999888754333321111        


Q ss_pred             -------------------------------------CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          138 -------------------------------------DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       138 -------------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                                                           .........|...|..++|+|.|+||+++.+|+++++||+++
T Consensus       287 p~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~  365 (406)
T KOG0295|consen  287 PESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKN  365 (406)
T ss_pred             ccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecc
Confidence                                                 000001122378899999999999999999999999999874

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.96  E-value=4.6e-28  Score=163.62  Aligned_cols=164  Identities=20%  Similarity=0.278  Sum_probs=143.7

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-C
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-D   65 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~   65 (179)
                      |+||+|+|||....+....+. |.-.|.+++|+|... ++++|           +++.++  +.+|+..|..+.|+|+ +
T Consensus       199 SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg-LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N  277 (464)
T KOG0284|consen  199 SDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGN  277 (464)
T ss_pred             cCCCeEEEEeccCCchhheeccCCCCcceeccCCccc-eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCC
Confidence            689999999998877666665 778899999999984 55555           667777  8899999999999999 9


Q ss_pred             eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439           66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE  144 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~  144 (179)
                      +|+++|.|..++++|+++-+.+..+++|...++++.|+|- ..+|.+|+.||.|..|.+...+++.....          
T Consensus       278 ~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~----------  347 (464)
T KOG0284|consen  278 WLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP----------  347 (464)
T ss_pred             eeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCc----------
Confidence            9999999999999999988889999999999999999994 66788999999999999986666655442          


Q ss_pred             cCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439          145 DAGSYFISAVCWKSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       145 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  176 (179)
                       .|...|++++|+|-|..|++|+.|.++++|.
T Consensus       348 -AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  348 -AHDGEIWSLAYHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             -ccccceeeeeccccceeEeecCCCcceeeec
Confidence             3378999999999999999999999999996

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=6.1e-26  Score=163.99  Aligned_cols=168  Identities=13%  Similarity=0.246  Sum_probs=130.1

Q ss_pred             CCCccEEEEEcCCce-------eEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEE
Q 038439            1 MAYGKVKVWCTRQEA-------SVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYV   59 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~-------~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~   59 (179)
                      |.|++|++||+.++.       ++..+. |...|.+++|+|++..+++++           ..++.+  +.+|...|.++
T Consensus        95 S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sl  174 (493)
T PTZ00421         95 SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSL  174 (493)
T ss_pred             eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEE
Confidence            579999999997652       344554 888999999999875566555           334444  77899999999


Q ss_pred             EEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCC-eEEEEEeeCCCEEEEec----cCCcEEEEEcCCCcc-cccc
Q 038439           60 KFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNE-KNFVGLTVNSEYIACGS----ESNEVYVYHKEISKP-VTWH  132 (179)
Q Consensus        60 ~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~----~d~~v~vwd~~~~~~-~~~~  132 (179)
                      +|+|+ .+|++++.|+.|++||+++++.+..+..|.+. ...+.|.+++..+++++    .|+.|++||+++... ....
T Consensus       175 a~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~  254 (493)
T PTZ00421        175 EWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTV  254 (493)
T ss_pred             EEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEe
Confidence            99999 89999999999999999999988888888764 34677888877777654    479999999987543 2222


Q ss_pred             ccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEeecC
Q 038439          133 RFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVLAA  179 (179)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~  179 (179)
                      ...           ....+....|++++++|++++. |+.|++||+++
T Consensus       255 ~~d-----------~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~  291 (493)
T PTZ00421        255 DLD-----------QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN  291 (493)
T ss_pred             ccC-----------CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence            111           1345666789999999998874 99999999863

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.95  E-value=2.8e-27  Score=162.60  Aligned_cols=164  Identities=20%  Similarity=0.325  Sum_probs=136.7

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-Ce
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-DE   66 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~~   66 (179)
                      |.|+.|++||+++|+++..+.....++++.|+|++++++.+|           ++++.+  +..|-+.|..+.|.++ ..
T Consensus       277 sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~r  356 (503)
T KOG0282|consen  277 SFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRR  356 (503)
T ss_pred             ecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCce
Confidence            569999999999999999999999999999999997787777           444544  7778999999999999 99


Q ss_pred             EEEecCCCcEEEEecCCCcce----------------------------------------------eeecCCC--CCeE
Q 038439           67 LASASTDSTLRLWDVKENLPV----------------------------------------------RTFRGHM--NEKN   98 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~~~~~----------------------------------------------~~~~~~~--~~v~   98 (179)
                      +++++.|+.++||+.+..-++                                              ..+++|.  +--.
T Consensus       357 FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~  436 (503)
T KOG0282|consen  357 FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSC  436 (503)
T ss_pred             EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCcee
Confidence            999999999999998764111                                              1122332  2234


Q ss_pred             EEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccC-CCeEEEEeCCCcEEEEe
Q 038439           99 FVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD-SPTMLTANSQGTIKVLV  176 (179)
Q Consensus        99 ~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd  176 (179)
                      .+.|||||++|++|..||.+.+||.++.+.+..+..            |...+..+.|+|. .+.+++++.||.|++||
T Consensus       437 ~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka------------h~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  437 QVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA------------HDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             eEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc------------CCcceEEEEecCCCcceeEecccCceeEecC
Confidence            588999999999999999999999999888776553            2678999999994 46799999999999996

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.95  E-value=4.3e-28  Score=161.53  Aligned_cols=160  Identities=20%  Similarity=0.340  Sum_probs=136.7

Q ss_pred             CCCccEEEEEcCCceeEEee-cCCCceeEEEEcCCCCeEEEEe--------C----CCcee---eecccCceeEEEEeeC
Q 038439            1 MAYGKVKVWCTRQEASVLNI-DMKANICCVKYNPGSSNYIAKY--------Q----STAPC---VHGHKKAVSYVKFLSN   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~--------~----~~~~~---~~~~~~~i~~~~~~~~   64 (179)
                      |.|.+|+|||++++++++++ .|.+.|..+.|+..  .++.++        +    +...+   +.+|.+.|+.+.|+. 
T Consensus       254 SSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng--~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~-  330 (499)
T KOG0281|consen  254 SSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNG--YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD-  330 (499)
T ss_pred             CCCceEEEEeccCCchhhHHhhhcceeEEEEEeCC--EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc-
Confidence            57999999999999999887 57889999999863  455554        1    11111   789999999999865 


Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE  144 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~  144 (179)
                      .+++++|.|.+|++|+..+++.++++.+|...|.|+.+  .++++++|+.|.+|++||++.|.++..++           
T Consensus       331 kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLe-----------  397 (499)
T KOG0281|consen  331 KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE-----------  397 (499)
T ss_pred             ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHh-----------
Confidence            69999999999999999999999999999999988887  68999999999999999999999887754           


Q ss_pred             cCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          145 DAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       145 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      +| +.-|.++.|  +.+.+++|..||+|+|||+.+
T Consensus       398 GH-EeLvRciRF--d~krIVSGaYDGkikvWdl~a  429 (499)
T KOG0281|consen  398 GH-EELVRCIRF--DNKRIVSGAYDGKIKVWDLQA  429 (499)
T ss_pred             ch-HHhhhheee--cCceeeeccccceEEEEeccc
Confidence            22 778999999  567899999999999999863

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=1e-25  Score=164.07  Aligned_cols=169  Identities=14%  Similarity=0.205  Sum_probs=128.9

Q ss_pred             CCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCC--------cee--eecccCceeEE
Q 038439            2 AYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QST--------APC--VHGHKKAVSYV   59 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~--------~~~--~~~~~~~i~~~   59 (179)
                      .++.|++|+......+..+. |.++|.+++|+|+...++++|           ..+        .++  +.+|...|.++
T Consensus        52 ~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sV  131 (568)
T PTZ00420         52 LIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISII  131 (568)
T ss_pred             ceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEE
Confidence            46788999887766666665 889999999999744555555           111        122  67899999999


Q ss_pred             EEeeC-C-eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCC
Q 038439           60 KFLSN-D-ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSP  137 (179)
Q Consensus        60 ~~~~~-~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~  137 (179)
                      +|+|+ . .+++++.|+.|++||+++++.+..+. +...|.+++|+|+|.+|++++.|+.|++||+++++.+..+..  |
T Consensus       132 af~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g--H  208 (568)
T PTZ00420        132 DWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI--H  208 (568)
T ss_pred             EECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec--c
Confidence            99998 4 46789999999999999988777775 567899999999999999999999999999999887755432  2


Q ss_pred             CCCCCcccCCcceEEEEEEccCCCeEEEEeCCC----cEEEEeec
Q 038439          138 DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG----TIKVLVLA  178 (179)
Q Consensus       138 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~iwd~~  178 (179)
                      ...     .....++...|++++.+|++++.|+    .|+|||++
T Consensus       209 ~g~-----~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr  248 (568)
T PTZ00420        209 DGG-----KNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK  248 (568)
T ss_pred             cCC-----ceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence            100     0011233345678999999988774    79999987

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=3.8e-27  Score=150.65  Aligned_cols=175  Identities=15%  Similarity=0.228  Sum_probs=136.9

Q ss_pred             CCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-CeE
Q 038439            2 AYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-DEL   67 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~~l   67 (179)
                      .|=+-+|||.-++..+..++|+.-|.+++|+.|..+++..|           +...+.  +.+|.+.|..+.|... ..+
T Consensus        79 adftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~i  158 (334)
T KOG0278|consen   79 ADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCI  158 (334)
T ss_pred             ccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceE
Confidence            46678999999999999999999999999999997777776           222222  8899999999999888 899


Q ss_pred             EEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCC----------
Q 038439           68 ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSP----------  137 (179)
Q Consensus        68 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~----------  137 (179)
                      ++++.|++||+||.++++.++++. ..+.|.++.++++|+++.++. .+.|++||..+..++..+.....          
T Consensus       159 LSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k  236 (334)
T KOG0278|consen  159 LSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKMPCNVESASLHPKK  236 (334)
T ss_pred             EeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEec-CceeEEeccccccceeeccCccccccccccCCC
Confidence            999999999999999999888876 466778888888887665543 45678888776655554432211          


Q ss_pred             -------------------CCC-CCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          138 -------------------DMD-DTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       138 -------------------~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                                         ..+ ......|.++|.++.|+|+|...++|+.||+|++|...
T Consensus       237 ~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  237 EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT  297 (334)
T ss_pred             ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence                               011 11112237899999999999999999999999999864

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=1.7e-27  Score=165.31  Aligned_cols=171  Identities=16%  Similarity=0.227  Sum_probs=130.1

Q ss_pred             CCCccEEEEEcCCce----eEEeec--CCCceeEEEEcCCCCeEEEEe---------CC----------Ccee-----ee
Q 038439            1 MAYGKVKVWCTRQEA----SVLNID--MKANICCVKYNPGSSNYIAKY---------QS----------TAPC-----VH   50 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~----~~~~~~--~~~~v~~~~~~~~~~~~~~~~---------~~----------~~~~-----~~   50 (179)
                      |-|.+|++||++...    ..+.++  ....|++++|++.|..++++.         +.          .+.+     .+
T Consensus       186 s~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTK  265 (641)
T KOG0772|consen  186 SLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTK  265 (641)
T ss_pred             cccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccC
Confidence            468899999998643    222232  456799999999998888776         11          1222     57


Q ss_pred             cccCceeEEEEeeC--CeEEEecCCCcEEEEecCCCc-ceeeecC-----CCCCeEEEEEeeCCCEEEEeccCCcEEEEE
Q 038439           51 GHKKAVSYVKFLSN--DELASASTDSTLRLWDVKENL-PVRTFRG-----HMNEKNFVGLTVNSEYIACGSESNEVYVYH  122 (179)
Q Consensus        51 ~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~-~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd  122 (179)
                      +|...++|.+|+|.  +.|+|++.|+++|+||+...+ .++.++.     ..-.+..++|+|+|..||+|+.||.|.+|+
T Consensus       266 GHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~  345 (641)
T KOG0772|consen  266 GHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWD  345 (641)
T ss_pred             CceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeee
Confidence            89999999999999  899999999999999998643 3333331     234678899999999999999999999999


Q ss_pred             cCCCccccccccC-CCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          123 KEISKPVTWHRFS-SPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       123 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      .........+... .|.        ....|+++.|+++|++|++-+.|+++++|||+.
T Consensus       346 ~~~~~v~p~~~vk~AH~--------~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq  395 (641)
T KOG0772|consen  346 KGSRTVRPVMKVKDAHL--------PGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ  395 (641)
T ss_pred             cCCcccccceEeeeccC--------CCCceeEEEeccccchhhhccCCCceeeeeccc
Confidence            8653332222221 111        044899999999999999999999999999974

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.8e-26  Score=146.44  Aligned_cols=162  Identities=19%  Similarity=0.243  Sum_probs=144.1

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-Ce
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DE   66 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~   66 (179)
                      |+|++|++|+...+.+++++. |..+|..++.+.|...+.++|          ++++.+  +.+|.+.|+.++|+.+ ..
T Consensus        36 GsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSV  115 (307)
T KOG0316|consen   36 GSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSV  115 (307)
T ss_pred             CCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceE
Confidence            579999999999999999996 888999999999987887777          677777  9999999999999999 99


Q ss_pred             EEEecCCCcEEEEecCC--CcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439           67 LASASTDSTLRLWDVKE--NLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE  144 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~  144 (179)
                      +++|+.|..+++||.++  .++++.+......|.++..+  +..|++|+.||+++.||++.+....-+.           
T Consensus       116 v~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~-----------  182 (307)
T KOG0316|consen  116 VASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF-----------  182 (307)
T ss_pred             EEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhc-----------
Confidence            99999999999999986  47788887777788888774  6689999999999999999998765543           


Q ss_pred             cCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          145 DAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       145 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                         ..+|++++|+++++..++++-|+++++.|-.
T Consensus       183 ---g~pit~vs~s~d~nc~La~~l~stlrLlDk~  213 (307)
T KOG0316|consen  183 ---GHPITSVSFSKDGNCSLASSLDSTLRLLDKE  213 (307)
T ss_pred             ---CCcceeEEecCCCCEEEEeeccceeeecccc
Confidence               7789999999999999999999999998744

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.95  E-value=1.1e-26  Score=155.79  Aligned_cols=166  Identities=17%  Similarity=0.360  Sum_probs=129.4

Q ss_pred             CCCccEEEEEcCC----------------ceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCc----ee
Q 038439            1 MAYGKVKVWCTRQ----------------EASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTA----PC   48 (179)
Q Consensus         1 ~~d~~i~vwd~~~----------------~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~----~~   48 (179)
                      ++.|.|+||++..                .+++.++. |+..=+.++|||-..-.+.+|           .++.    ..
T Consensus       172 se~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~  251 (440)
T KOG0302|consen  172 SENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQR  251 (440)
T ss_pred             cccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCc
Confidence            4679999999753                13455554 777889999999443334444           1111    11


Q ss_pred             -eecccCceeEEEEeeC--CeEEEecCCCcEEEEecCCCc--ceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEc
Q 038439           49 -VHGHKKAVSYVKFLSN--DELASASTDSTLRLWDVKENL--PVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHK  123 (179)
Q Consensus        49 -~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~  123 (179)
                       +.+|+..|-.+.|+|.  +.|++||-|++|+|||++.+.  .....+.|.+.|+-++|+.+-.+|++|+.||+++|||+
T Consensus       252 Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDL  331 (440)
T KOG0302|consen  252 PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDL  331 (440)
T ss_pred             cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEh
Confidence             6679999999999999  899999999999999999872  22334789999999999998889999999999999999


Q ss_pred             CCCc---cccccccCCCCCCCCcccCCcceEEEEEEccC-CCeEEEEeCCCcEEEEeec
Q 038439          124 EISK---PVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD-SPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       124 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~  178 (179)
                      |+-+   ++..++.            |..+|+++.|+|. ...|++++.|..|.+||+.
T Consensus       332 R~~~~~~pVA~fk~------------Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  332 RQFKSGQPVATFKY------------HKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             hhccCCCcceeEEe------------ccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            9743   3434332            3889999999994 5678889999999999985

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.95  E-value=4e-27  Score=161.89  Aligned_cols=179  Identities=14%  Similarity=0.242  Sum_probs=145.3

Q ss_pred             CCCccEEEEEcCC-ceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCceeeec-ccCceeEEEEeeC--C
Q 038439            1 MAYGKVKVWCTRQ-EASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPCVHG-HKKAVSYVKFLSN--D   65 (179)
Q Consensus         1 ~~d~~i~vwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~~~~-~~~~i~~~~~~~~--~   65 (179)
                      |-|+.|+||++-. ++++.++. |..+|.+++|+++|..++.++          .+++++..- -...++|+.|+|+  +
T Consensus       234 gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n  313 (503)
T KOG0282|consen  234 GMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQN  313 (503)
T ss_pred             CCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCc
Confidence            4699999999876 88999986 889999999999999999998          667776333 3456789999999  7


Q ss_pred             eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCC--------
Q 038439           66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSP--------  137 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~--------  137 (179)
                      .+++|..|+.|+.||+++++.++.+..|-+.+..+.|-++|+++++.+.|+.++||+.+.+-++........        
T Consensus       314 ~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~  393 (503)
T KOG0282|consen  314 IFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTL  393 (503)
T ss_pred             EEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceec
Confidence            899999999999999999999999999999999999999999999999999999999887654433221100        


Q ss_pred             ---------------------------CCCCCcccCC-cceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          138 ---------------------------DMDDTDEDAG-SYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       138 ---------------------------~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                                                 .....+.+|. .+.-..+.|||||++|++|+.||.+.+||.++
T Consensus       394 ~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt  463 (503)
T KOG0282|consen  394 HPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT  463 (503)
T ss_pred             CCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechh
Confidence                                       0111122221 23456789999999999999999999999764

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=8.8e-27  Score=168.95  Aligned_cols=116  Identities=23%  Similarity=0.401  Sum_probs=106.8

Q ss_pred             eecccCceeEEEEeeCCeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEee-CCCEEEEeccCCcEEEEEcCCCc
Q 038439           49 VHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTV-NSEYIACGSESNEVYVYHKEISK  127 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~v~vwd~~~~~  127 (179)
                      +.+|.+.|..+.|+.+++|+++|.|++||+|++...+++..|. |...|+|++|+| |.+||++|+-|+.|+||++...+
T Consensus       365 f~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~  443 (712)
T KOG0283|consen  365 FKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK  443 (712)
T ss_pred             hhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCe
Confidence            7899999999999999999999999999999999999998885 899999999999 78999999999999999999887


Q ss_pred             cccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          128 PVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .+.-..+             ..-|++++|.|+|+..+.|+.+|.+++|+..
T Consensus       444 Vv~W~Dl-------------~~lITAvcy~PdGk~avIGt~~G~C~fY~t~  481 (712)
T KOG0283|consen  444 VVDWNDL-------------RDLITAVCYSPDGKGAVIGTFNGYCRFYDTE  481 (712)
T ss_pred             eEeehhh-------------hhhheeEEeccCCceEEEEEeccEEEEEEcc
Confidence            7655544             5679999999999999999999999999864

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=6.1e-25  Score=158.85  Aligned_cols=147  Identities=19%  Similarity=0.294  Sum_probs=119.4

Q ss_pred             cCCCceeEEEEcC-CCCeEEEEe----------CCC-------cee--eecccCceeEEEEeeC--CeEEEecCCCcEEE
Q 038439           21 DMKANICCVKYNP-GSSNYIAKY----------QST-------APC--VHGHKKAVSYVKFLSN--DELASASTDSTLRL   78 (179)
Q Consensus        21 ~~~~~v~~~~~~~-~~~~~~~~~----------~~~-------~~~--~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~i   78 (179)
                      .|.+.|.+++|+| ++..+++++          ...       .++  +.+|...|.+++|+|+  +.|++++.|+.|++
T Consensus        73 GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrI  152 (493)
T PTZ00421         73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNV  152 (493)
T ss_pred             CCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEE
Confidence            4788999999999 664444444          111       233  7889999999999998  68999999999999


Q ss_pred             EecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEcc
Q 038439           79 WDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKS  158 (179)
Q Consensus        79 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  158 (179)
                      ||+++++.+..+..|...|.+++|+|+|.+|++++.|+.|++||+++++.+..+..  +         .......+.|.+
T Consensus       153 WDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~--H---------~~~~~~~~~w~~  221 (493)
T PTZ00421        153 WDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEA--H---------ASAKSQRCLWAK  221 (493)
T ss_pred             EECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEec--C---------CCCcceEEEEcC
Confidence            99999998889999999999999999999999999999999999999887655432  1         123345678999


Q ss_pred             CCCeEEEEe----CCCcEEEEeec
Q 038439          159 DSPTMLTAN----SQGTIKVLVLA  178 (179)
Q Consensus       159 ~~~~l~~~~----~dg~i~iwd~~  178 (179)
                      ++..+++++    .|+.|++||++
T Consensus       222 ~~~~ivt~G~s~s~Dr~VklWDlr  245 (493)
T PTZ00421        222 RKDLIITLGCSKSQQRQIMLWDTR  245 (493)
T ss_pred             CCCeEEEEecCCCCCCeEEEEeCC
Confidence            888777654    47899999986

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=3.4e-26  Score=164.24  Aligned_cols=167  Identities=16%  Similarity=0.263  Sum_probs=144.5

Q ss_pred             CCCccEEEEEcCCcee----EEee-cCCCceeEEEEcCCCCeEEEEe---------------CCCcee-------eeccc
Q 038439            1 MAYGKVKVWCTRQEAS----VLNI-DMKANICCVKYNPGSSNYIAKY---------------QSTAPC-------VHGHK   53 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~----~~~~-~~~~~v~~~~~~~~~~~~~~~~---------------~~~~~~-------~~~~~   53 (179)
                      |.|+++++|.++++..    +... .|...|.+++++..+..+++++               .+..++       ...|.
T Consensus       384 sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHd  463 (775)
T KOG0319|consen  384 SKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHD  463 (775)
T ss_pred             cCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhc
Confidence            5799999998854432    2222 4889999999998887788777               111122       35799


Q ss_pred             CceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccc
Q 038439           54 KAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWH  132 (179)
Q Consensus        54 ~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~  132 (179)
                      +.|++++++|+ .+++|||.|++.++|++.+.+....+.+|...++++.|+|..+.+++++.|.+|+||.+.+..++.++
T Consensus       464 KdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~  543 (775)
T KOG0319|consen  464 KDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF  543 (775)
T ss_pred             ccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeee
Confidence            99999999999 99999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             ccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          133 RFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      .           +| ...|..+.|-.++..|++++.||-+++|++.+
T Consensus       544 e-----------GH-~~aVlra~F~~~~~qliS~~adGliKlWnikt  578 (775)
T KOG0319|consen  544 E-----------GH-TSAVLRASFIRNGKQLISAGADGLIKLWNIKT  578 (775)
T ss_pred             c-----------Cc-cceeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence            5           22 88899999999999999999999999999864

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.95  E-value=6.8e-25  Score=168.17  Aligned_cols=177  Identities=46%  Similarity=0.778  Sum_probs=139.9

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-----------CCCc-ee--eecccCceeEEEEeeCCe
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-----------QSTA-PC--VHGHKKAVSYVKFLSNDE   66 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~-~~--~~~~~~~i~~~~~~~~~~   66 (179)
                      |.||+|++||+.+++.+..+.+...+.++.|++....++++|           +..+ ++  +.+|...|.++.|.+...
T Consensus       595 s~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~  674 (793)
T PLN00181        595 SDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSST  674 (793)
T ss_pred             cCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCE
Confidence            579999999999999888888778899999965433555555           2222 33  678999999999974489


Q ss_pred             EEEecCCCcEEEEecCC------CcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCC
Q 038439           67 LASASTDSTLRLWDVKE------NLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMD  140 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~  140 (179)
                      +++++.|+.|++||++.      .+++..+.+|...+..++|+|++.+|++|+.|+.|++|+.....++..+........
T Consensus       675 lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~  754 (793)
T PLN00181        675 LVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPV  754 (793)
T ss_pred             EEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcc
Confidence            99999999999999974      356788889999999999999999999999999999999887665544333221110


Q ss_pred             -CCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          141 -DTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       141 -~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                       ......+...|.+++|+|++..|++|+.||.|+||++
T Consensus       755 ~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        755 SGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             cccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence             0011222567999999999999999999999999996

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=3.5e-25  Score=141.80  Aligned_cols=165  Identities=15%  Similarity=0.224  Sum_probs=137.2

Q ss_pred             CccEEEEEcCCceeE---EeecCCCceeEEEEcCCCCeEEEEe------------CCCcee--eecccCceeEEEEeeC-
Q 038439            3 YGKVKVWCTRQEASV---LNIDMKANICCVKYNPGSSNYIAKY------------QSTAPC--VHGHKKAVSYVKFLSN-   64 (179)
Q Consensus         3 d~~i~vwd~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~------------~~~~~~--~~~~~~~i~~~~~~~~-   64 (179)
                      .|++.|.++...+-+   ..+.-.+.+..++|++.....++++            ....|+  ++.|...|.++.|++. 
T Consensus        37 ~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~  116 (311)
T KOG0277|consen   37 NGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVR  116 (311)
T ss_pred             CceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEecccccc
Confidence            588999998644433   3455788999999999876655554            334566  8999999999999998 


Q ss_pred             -CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCC
Q 038439           65 -DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDT  142 (179)
Q Consensus        65 -~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~  142 (179)
                       ..++++|.|++|++|+...++.+.++.+|...|....|+|. ++.+++++.|+.+++||++.......++.        
T Consensus       117 r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a--------  188 (311)
T KOG0277|consen  117 RRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA--------  188 (311)
T ss_pred             ceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEe--------
Confidence             67888899999999999989999999999999999999995 78899999999999999997544433332        


Q ss_pred             cccCCcceEEEEEEcc-CCCeEEEEeCCCcEEEEeecC
Q 038439          143 DEDAGSYFISAVCWKS-DSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~  179 (179)
                          |...+.++.|+. +.+.|++|+.|+.|++||+++
T Consensus       189 ----h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~  222 (311)
T KOG0277|consen  189 ----HNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRN  222 (311)
T ss_pred             ----ccceeEeecccccCCcEEEecCCCceEEEEehhh
Confidence                266899999997 778899999999999999874

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=4e-25  Score=142.01  Aligned_cols=165  Identities=19%  Similarity=0.279  Sum_probs=143.0

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe--------------------------------------
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY--------------------------------------   42 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--------------------------------------   42 (179)
                      +.|.+|++||.+.+++...+..+.+=.-+.|+|+|.++++.+                                      
T Consensus        84 s~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Ff  163 (313)
T KOG1407|consen   84 SGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFF  163 (313)
T ss_pred             cCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEE
Confidence            468999999999999999998777777789999996665555                                      


Q ss_pred             -------------CCCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCC
Q 038439           43 -------------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNS  106 (179)
Q Consensus        43 -------------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  106 (179)
                                   ..-+++  +++|.....||.|+|+ ++|++|+.|..+.+||+..--+++.+..+.-+|+.++|+.+|
T Consensus       164 lt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg  243 (313)
T KOG1407|consen  164 LTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDG  243 (313)
T ss_pred             EecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCc
Confidence                         222344  7889999999999999 999999999999999999888889999899999999999999


Q ss_pred             CEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCC---------CcEEEEee
Q 038439          107 EYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQ---------GTIKVLVL  177 (179)
Q Consensus       107 ~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~iwd~  177 (179)
                      ++||++++|..|-|=++++|..+..+..             .++...++|+|...+||-++.|         |.+++|-+
T Consensus       244 ~~lASaSEDh~IDIA~vetGd~~~eI~~-------------~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~  310 (313)
T KOG1407|consen  244 RMLASASEDHFIDIAEVETGDRVWEIPC-------------EGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGL  310 (313)
T ss_pred             ceeeccCccceEEeEecccCCeEEEeec-------------cCCceeEEecCCCceeeEEecCCCCccccccceeEEecC
Confidence            9999999999999999999999877765             6678999999999988877663         57888866


Q ss_pred             c
Q 038439          178 A  178 (179)
Q Consensus       178 ~  178 (179)
                      .
T Consensus       311 ~  311 (313)
T KOG1407|consen  311 S  311 (313)
T ss_pred             C
Confidence            4

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.1e-25  Score=144.08  Aligned_cols=165  Identities=18%  Similarity=0.281  Sum_probs=142.2

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe------------CCCcee-eecccCceeEEEEeeC--
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY------------QSTAPC-VHGHKKAVSYVKFLSN--   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~------------~~~~~~-~~~~~~~i~~~~~~~~--   64 (179)
                      |.|++||+|+...++.+.++. |...|...+|+|..+.+++..            ..++.+ +..|...|.|+.|+.-  
T Consensus       124 SWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~  203 (311)
T KOG0277|consen  124 SWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH  203 (311)
T ss_pred             ccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCC
Confidence            689999999999999999986 888999999999988888876            446666 8899999999999976  


Q ss_pred             CeEEEecCCCcEEEEecCC-CcceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCC
Q 038439           65 DELASASTDSTLRLWDVKE-NLPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDT  142 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~  142 (179)
                      ..++||+.|+.|+.||++. ..++..+.+|.-.|+.+.|+|. ...|++++.|-++++||...........         
T Consensus       204 ~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~---------  274 (311)
T KOG0277|consen  204 NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETV---------  274 (311)
T ss_pred             cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhh---------
Confidence            8899999999999999987 5677888899999999999996 5678999999999999998654432221         


Q ss_pred             cccCCcceEEEEEEcc-CCCeEEEEeCCCcEEEEe
Q 038439          143 DEDAGSYFISAVCWKS-DSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd  176 (179)
                        .+|...+..+.|++ ++.++|+++.|+.++||+
T Consensus       275 --~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  275 --DHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             --hccceEEeccccccccCceeeecccccceeeec
Confidence              24488899999998 678899999999999998

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=9.1e-26  Score=165.41  Aligned_cols=175  Identities=15%  Similarity=0.213  Sum_probs=146.9

Q ss_pred             CccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-CeEE
Q 038439            3 YGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      .|.|++||++-+.++..|. |.++|..++|+|+++.+++.|          ...+++  +.+|..-|..+.|++. ..++
T Consensus        30 sG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIl  109 (1202)
T KOG0292|consen   30 SGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWIL  109 (1202)
T ss_pred             CceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEE
Confidence            5899999999999999885 999999999999997666666          455666  8899999999999999 9999


Q ss_pred             EecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccccc--------------
Q 038439           69 SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF--------------  134 (179)
Q Consensus        69 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~--------------  134 (179)
                      ++|.|.+||||+..+++++..+.+|..-|.|.+|+|....+++++.|-+|+|||+..-+.......              
T Consensus       110 SASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~d  189 (1202)
T KOG0292|consen  110 SASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSD  189 (1202)
T ss_pred             EccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchh
Confidence            999999999999999999999999999999999999999999999999999999864322211110              


Q ss_pred             --CCC--CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          135 --SSP--DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       135 --~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                        ...  .......+| ...|+-++|+|.-..+++|++|..|++|.++
T Consensus       190 Lfg~~DaVVK~VLEGH-DRGVNwaAfhpTlpliVSG~DDRqVKlWrmn  236 (1202)
T KOG0292|consen  190 LFGQTDAVVKHVLEGH-DRGVNWAAFHPTLPLIVSGADDRQVKLWRMN  236 (1202)
T ss_pred             hcCCcCeeeeeeeccc-ccccceEEecCCcceEEecCCcceeeEEEec
Confidence              000  011112333 7889999999999999999999999999875

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.94  E-value=4.2e-24  Score=145.18  Aligned_cols=165  Identities=21%  Similarity=0.343  Sum_probs=137.6

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-C
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-D   65 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~   65 (179)
                      +.||.|++||+.+++.+..+. +...+.++.|+|++. +++++           ...+.+  +..|...+.++.|+|+ .
T Consensus        70 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  148 (289)
T cd00200          70 SSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT  148 (289)
T ss_pred             cCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC
Confidence            358999999999877777665 667899999999974 55544           223333  5568889999999998 7


Q ss_pred             eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCccc
Q 038439           66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDED  145 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  145 (179)
                      ++++++.++.+++||++.++.+..+..+...+.++.|+|+++.+++++.++.+++||+++++.+..+..  +        
T Consensus       149 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~--~--------  218 (289)
T cd00200         149 FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG--H--------  218 (289)
T ss_pred             EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhh--c--------
Confidence            788877799999999998888888888888999999999999999999999999999998777655431  1        


Q ss_pred             CCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          146 AGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       146 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                        ...+.+++|+|++.++++++.||.+++||+.
T Consensus       219 --~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~  249 (289)
T cd00200         219 --ENGVNSVAFSPDGYLLASGSEDGTIRVWDLR  249 (289)
T ss_pred             --CCceEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence              5589999999998888888889999999985

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.94  E-value=2.2e-25  Score=149.52  Aligned_cols=168  Identities=16%  Similarity=0.289  Sum_probs=139.2

Q ss_pred             CCCccEEEEEcCCceeEEee-----cCCCceeEEEEcCCCCeEEEEe---------------------------------
Q 038439            1 MAYGKVKVWCTRQEASVLNI-----DMKANICCVKYNPGSSNYIAKY---------------------------------   42 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~---------------------------------   42 (179)
                      |.|.++++|-.+.++.....     .|+..|-+++..++|..++..+                                 
T Consensus       166 s~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~  245 (423)
T KOG0313|consen  166 SMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREK  245 (423)
T ss_pred             cCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhh
Confidence            57999999998877543222     5899999999999996665554                                 


Q ss_pred             --CCCcee--eecccCceeEEEEeeCCeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcE
Q 038439           43 --QSTAPC--VHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEV  118 (179)
Q Consensus        43 --~~~~~~--~~~~~~~i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v  118 (179)
                        ..+.|+  +.+|+.+|.++.|++...++++|.|.+|+.||+.++....++.. .....+++++|..++|++|+.|..+
T Consensus       246 ~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~i  324 (423)
T KOG0313|consen  246 EGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHI  324 (423)
T ss_pred             cccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCce
Confidence              233455  89999999999998888999999999999999999998888875 5678999999999999999999999


Q ss_pred             EEEEcCCCcc-ccccccCCCCCCCCcccCCcceEEEEEEcc-CCCeEEEEeCCCcEEEEeecC
Q 038439          119 YVYHKEISKP-VTWHRFSSPDMDDTDEDAGSYFISAVCWKS-DSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       119 ~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      ++||.+++.- +..+.+-+|          ...|.++.|+| +...|++|+.|+++++||+++
T Consensus       325 rl~DPR~~~gs~v~~s~~gH----------~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS  377 (423)
T KOG0313|consen  325 RLWDPRTGDGSVVSQSLIGH----------KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS  377 (423)
T ss_pred             eecCCCCCCCceeEEeeecc----------hhhhhheecCCCCceEEEEEecCCeEEEEEecc
Confidence            9999998643 333444333          77999999999 456788999999999999975

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.4e-25  Score=157.87  Aligned_cols=162  Identities=22%  Similarity=0.326  Sum_probs=141.9

Q ss_pred             CCCccEEEEEcCC-ceeEEeec-CCCceeEEEEcCCCCeEEEEe---------CCCce--e--eecccCceeEEEEeeC-
Q 038439            1 MAYGKVKVWCTRQ-EASVLNID-MKANICCVKYNPGSSNYIAKY---------QSTAP--C--VHGHKKAVSYVKFLSN-   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~---------~~~~~--~--~~~~~~~i~~~~~~~~-   64 (179)
                      |+|-+|++||.+. ..+.++++ |..-|.+++|+|..+.-++++         .-+++  .  +.+|...|+|+.|-+. 
T Consensus       116 SDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~g  195 (794)
T KOG0276|consen  116 SDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGG  195 (794)
T ss_pred             CCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCC
Confidence            6899999999986 46777886 888899999999888888777         22222  2  8899999999999876 


Q ss_pred             --CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCC
Q 038439           65 --DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDT  142 (179)
Q Consensus        65 --~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~  142 (179)
                        .+|++|+.|.+++|||.++..+++++.+|...|..+.|+|.-..|++|++||++++|+-.+.+....+.+.       
T Consensus       196 dkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g-------  268 (794)
T KOG0276|consen  196 DKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG-------  268 (794)
T ss_pred             CcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC-------
Confidence              69999999999999999999999999999999999999999999999999999999999998877776654       


Q ss_pred             cccCCcceEEEEEEccCCCeEEEEeCCCcEEE
Q 038439          143 DEDAGSYFISAVCWKSDSPTMLTANSQGTIKV  174 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  174 (179)
                           ..++++++-.+.++.++.|.+.|.|.+
T Consensus       269 -----leRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  269 -----LERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             -----CceEEEEeecCCCCeEEEeccCCcEEE
Confidence                 668999999998888999998887654

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.94  E-value=5e-24  Score=144.78  Aligned_cols=165  Identities=23%  Similarity=0.350  Sum_probs=138.8

Q ss_pred             CCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-CeE
Q 038439            2 AYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DEL   67 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~l   67 (179)
                      .||.|++|++.+++....+. +...+..+.|+|++..+++++          ..++.+  +..|...+.++.|+|+ .++
T Consensus        29 ~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  108 (289)
T cd00200          29 GDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRIL  108 (289)
T ss_pred             cCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEE
Confidence            58999999999887666664 677889999999996666665          222233  6678889999999999 788


Q ss_pred             EEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCC
Q 038439           68 ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAG  147 (179)
Q Consensus        68 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  147 (179)
                      ++++.++.+++||+++++....+..|...+.++.|+|++.++++++.++.|++||+++++....+..  +          
T Consensus       109 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~--~----------  176 (289)
T cd00200         109 SSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG--H----------  176 (289)
T ss_pred             EEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEec--C----------
Confidence            8888899999999998888888888888999999999999999888899999999998777655542  1          


Q ss_pred             cceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          148 SYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       148 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ...+.++.|+|+++.+++++.++.+++||++
T Consensus       177 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~  207 (289)
T cd00200         177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS  207 (289)
T ss_pred             ccccceEEECCCcCEEEEecCCCcEEEEECC
Confidence            5579999999999999999999999999986

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=6.3e-24  Score=154.75  Aligned_cols=168  Identities=15%  Similarity=0.170  Sum_probs=124.3

Q ss_pred             CCCccEEEEEcCCce--------eEEee-cCCCceeEEEEcCCCCeEEEEe-----------CCCcee-eecccCceeEE
Q 038439            1 MAYGKVKVWCTRQEA--------SVLNI-DMKANICCVKYNPGSSNYIAKY-----------QSTAPC-VHGHKKAVSYV   59 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~--------~~~~~-~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~i~~~   59 (179)
                      |.|++|+|||+.++.        ++..+ .|...|.+++|+|++..+++++           ..++.+ ...|...|.++
T Consensus        94 S~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~Sl  173 (568)
T PTZ00420         94 SEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSL  173 (568)
T ss_pred             eCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEE
Confidence            579999999997642        22334 3788999999999987776654           223333 12356789999


Q ss_pred             EEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEE-----EEeeCCCEEEEeccCC----cEEEEEcCC-Ccc
Q 038439           60 KFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFV-----GLTVNSEYIACGSESN----EVYVYHKEI-SKP  128 (179)
Q Consensus        60 ~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~-----~~~~~~~~~~~~~~d~----~v~vwd~~~-~~~  128 (179)
                      +|+|+ .+|++++.|+.|++||+++++.+..+.+|.+.+...     .|++++.++++++.++    .|++||++. .++
T Consensus       174 swspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p  253 (568)
T PTZ00420        174 KWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSA  253 (568)
T ss_pred             EECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCc
Confidence            99999 889999999999999999999999998888754432     3458888999877664    799999995 555


Q ss_pred             ccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          129 VTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      +........          ...+.-....+++.++++|+.|+.|++|++.
T Consensus       254 l~~~~ld~~----------~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~  293 (568)
T PTZ00420        254 LVTMSIDNA----------SAPLIPHYDESTGLIYLIGKGDGNCRYYQHS  293 (568)
T ss_pred             eEEEEecCC----------ccceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence            554443221          2233333335568899999999999999975

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.94  E-value=2.4e-24  Score=149.95  Aligned_cols=171  Identities=19%  Similarity=0.228  Sum_probs=142.4

Q ss_pred             cEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe--------CCCcee-----eecccCceeEEEEeeC-CeEEE
Q 038439            5 KVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY--------QSTAPC-----VHGHKKAVSYVKFLSN-DELAS   69 (179)
Q Consensus         5 ~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~--------~~~~~~-----~~~~~~~i~~~~~~~~-~~l~~   69 (179)
                      .+.+||  ++..+-.+. |...|++++|-|..+.-++++        -.+.|.     +..|.+-|.|++|+|| .++++
T Consensus       130 ~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat  207 (603)
T KOG0318|consen  130 HVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFAT  207 (603)
T ss_pred             EEEEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEE
Confidence            445555  556666664 788899999999998888887        223333     6679999999999999 99999


Q ss_pred             ecCCCcEEEEecCCCcceeeec---CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCC---------
Q 038439           70 ASTDSTLRLWDVKENLPVRTFR---GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSP---------  137 (179)
Q Consensus        70 ~~~d~~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~---------  137 (179)
                      ++.|+.+.+||=.+++.+..+.   +|.+.|+.++|+||+..+++++.|.+++|||+.+.+.+.++.....         
T Consensus       208 ~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~l  287 (603)
T KOG0318|consen  208 AGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCL  287 (603)
T ss_pred             ecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEE
Confidence            9999999999999999999887   7999999999999999999999999999999998877666543322         


Q ss_pred             -----------------------CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          138 -----------------------DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       138 -----------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                                             .......+| ...|+++..+|++.+|++|+.||.|.-|+..
T Consensus       288 Wqkd~lItVSl~G~in~ln~~d~~~~~~i~GH-nK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~  350 (603)
T KOG0318|consen  288 WQKDHLITVSLSGTINYLNPSDPSVLKVISGH-NKSITALTVSPDGKTIYSGSYDGHINSWDSG  350 (603)
T ss_pred             EeCCeEEEEEcCcEEEEecccCCChhheeccc-ccceeEEEEcCCCCEEEeeccCceEEEEecC
Confidence                                   222334455 7889999999999999999999999999975

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.9e-24  Score=138.63  Aligned_cols=178  Identities=16%  Similarity=0.238  Sum_probs=136.7

Q ss_pred             CCCccEEEEEcCC--ceeEEeec-CCCceeEEEEcCCCCeEEEEe-------------CCCcee--eecccCceeEEEEe
Q 038439            1 MAYGKVKVWCTRQ--EASVLNID-MKANICCVKYNPGSSNYIAKY-------------QSTAPC--VHGHKKAVSYVKFL   62 (179)
Q Consensus         1 ~~d~~i~vwd~~~--~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~--~~~~~~~i~~~~~~   62 (179)
                      |-|.++.||.-..  .+++..++ |..+|.+++|+++|..|..++             ...+++  ++.|+..|..+.|+
T Consensus        80 SFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WH  159 (312)
T KOG0645|consen   80 SFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWH  159 (312)
T ss_pred             eccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEc
Confidence            4688999998654  46777776 889999999999995444444             122333  88999999999999


Q ss_pred             eC-CeEEEecCCCcEEEEecC---CCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCc------ccccc
Q 038439           63 SN-DELASASTDSTLRLWDVK---ENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK------PVTWH  132 (179)
Q Consensus        63 ~~-~~l~~~~~d~~v~iwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~------~~~~~  132 (179)
                      |. .+|+++|.|.+|++|.-.   .-++++++.+|...|.+++|++.|..+++++.|++++||.+.+.-      .+...
T Consensus       160 Pt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v  239 (312)
T KOG0645|consen  160 PTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDV  239 (312)
T ss_pred             CCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcchhcccceEee
Confidence            99 999999999999999876   246788999999999999999999999999999999999854321      11101


Q ss_pred             ccC-------------------C----C--CCCCCcccCCcceEEEEEEccC-CCeEEEEeCCCcEEEEeec
Q 038439          133 RFS-------------------S----P--DMDDTDEDAGSYFISAVCWKSD-SPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       133 ~~~-------------------~----~--~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~  178 (179)
                      ...                   .    +  .........|+..|+++.|.|. .+.|++|+.||.|++|.+.
T Consensus       240 ~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  240 PWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             eecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            000                   0    0  0011123445779999999994 6889999999999999875

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.93  E-value=7.5e-25  Score=157.97  Aligned_cols=164  Identities=13%  Similarity=0.215  Sum_probs=141.1

Q ss_pred             CCCccEEEEEcCC-----c--eeE------EeecCCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccC
Q 038439            1 MAYGKVKVWCTRQ-----E--ASV------LNIDMKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKK   54 (179)
Q Consensus         1 ~~d~~i~vwd~~~-----~--~~~------~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~   54 (179)
                      |.|.+|++||..-     +  +.+      .+++....|.|+++|||| .+++++           ++-+..  +.+|.-
T Consensus       473 saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflDtlKFflsLYGHkL  551 (888)
T KOG0306|consen  473 SADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKL  551 (888)
T ss_pred             cCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC-cEEEEEeccCeEEEEEecceeeeeeeccccc
Confidence            6799999999641     1  111      234567889999999999 677777           333333  889999


Q ss_pred             ceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccc
Q 038439           55 AVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHR  133 (179)
Q Consensus        55 ~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~  133 (179)
                      ||.|+..+|+ ..++|||.|+.|++|-+.-|.+-..+.+|...|.++.|.|+...+++++.|+.|+-||-...+.++.+.
T Consensus       552 PV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~  631 (888)
T KOG0306|consen  552 PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD  631 (888)
T ss_pred             ceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec
Confidence            9999999999 999999999999999999999999999999999999999999999999999999999998887776654


Q ss_pred             cCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          134 FSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       134 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                                 .| ...|++++.+|+|.++++++.|..|++|.-
T Consensus       632 -----------~H-~~ev~cLav~~~G~~vvs~shD~sIRlwE~  663 (888)
T KOG0306|consen  632 -----------GH-HSEVWCLAVSPNGSFVVSSSHDKSIRLWER  663 (888)
T ss_pred             -----------cc-hheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence                       22 678999999999999999999999999974

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.93  E-value=1.2e-23  Score=161.36  Aligned_cols=164  Identities=19%  Similarity=0.293  Sum_probs=129.9

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC--
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN--   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~--   64 (179)
                      +.||+|+|||+.+++.+..+. |...|.+++|+|....++++|           +.+..+  +. +...+.++.|++.  
T Consensus       552 ~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~g  630 (793)
T PLN00181        552 NFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-TKANICCVQFPSESG  630 (793)
T ss_pred             eCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-cCCCeEEEEEeCCCC
Confidence            469999999999998888775 889999999997433455544           223333  33 3357889999654  


Q ss_pred             CeEEEecCCCcEEEEecCCCc-ceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCc------cccccccCCC
Q 038439           65 DELASASTDSTLRLWDVKENL-PVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK------PVTWHRFSSP  137 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~------~~~~~~~~~~  137 (179)
                      ..+++|+.|+.|++||++..+ .+..+.+|...|..+.|. ++.++++++.|+.|++||++.+.      ++..  +.  
T Consensus       631 ~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~--~~--  705 (793)
T PLN00181        631 RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHS--FM--  705 (793)
T ss_pred             CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEE--Ec--
Confidence            789999999999999998765 566778899999999997 78899999999999999998542      2211  21  


Q ss_pred             CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          138 DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       138 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                             +| ...+..++|+|++++|++|+.|+.|++|+..
T Consensus       706 -------gh-~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~  738 (793)
T PLN00181        706 -------GH-TNVKNFVGLSVSDGYIATGSETNEVFVYHKA  738 (793)
T ss_pred             -------CC-CCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence                   22 6678899999999999999999999999853

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.93  E-value=1.1e-24  Score=142.27  Aligned_cols=145  Identities=21%  Similarity=0.350  Sum_probs=125.1

Q ss_pred             cCCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcc
Q 038439           21 DMKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLP   86 (179)
Q Consensus        21 ~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~   86 (179)
                      .|++.|..+.|+|+|..++..|           ...+..  +++|.+.|..+.|.++ +.+++++.|++++.||.++++.
T Consensus        45 gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~  124 (338)
T KOG0265|consen   45 GHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKR  124 (338)
T ss_pred             CCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccccee
Confidence            4889999999999996555555           111222  7899999999999999 9999999999999999999999


Q ss_pred             eeeecCCCCCeEEEEEeeCCC-EEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEE
Q 038439           87 VRTFRGHMNEKNFVGLTVNSE-YIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLT  165 (179)
Q Consensus        87 ~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  165 (179)
                      ++.++.|...++.+.-+.-|. ++.+++.|+++++||+|+.+.++.++.             ...++++.|..++..+.+
T Consensus       125 ~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-------------kyqltAv~f~d~s~qv~s  191 (338)
T KOG0265|consen  125 IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-------------KYQLTAVGFKDTSDQVIS  191 (338)
T ss_pred             eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-------------ceeEEEEEecccccceee
Confidence            999999999999988554454 467889999999999999998887754             668999999999999999


Q ss_pred             EeCCCcEEEEeec
Q 038439          166 ANSQGTIKVLVLA  178 (179)
Q Consensus       166 ~~~dg~i~iwd~~  178 (179)
                      |+-|+.|++||++
T Consensus       192 ggIdn~ikvWd~r  204 (338)
T KOG0265|consen  192 GGIDNDIKVWDLR  204 (338)
T ss_pred             ccccCceeeeccc
Confidence            9999999999985

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=6.4e-25  Score=145.15  Aligned_cols=165  Identities=18%  Similarity=0.325  Sum_probs=140.4

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-------------------------------------
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-------------------------------------   42 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-------------------------------------   42 (179)
                      |.|.+.+||.++++.|+..+. |.+.|++++|++.+. ++.++                                     
T Consensus       167 SADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe  245 (481)
T KOG0300|consen  167 SADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDE  245 (481)
T ss_pred             ccccceeEEeeccccceeeecccccceeeEEeccccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccc
Confidence            578999999999999999996 889999999999984 54444                                     


Q ss_pred             --------------CCCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeC
Q 038439           43 --------------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVN  105 (179)
Q Consensus        43 --------------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  105 (179)
                                    ....|+  +.+|...|.+..|... ..+++++.|.+..+||+++++++..+.+|....+.++-+|.
T Consensus       246 ~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt  325 (481)
T KOG0300|consen  246 HNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT  325 (481)
T ss_pred             cccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCc
Confidence                          011233  8899999999999988 99999999999999999999999999999999999999999


Q ss_pred             CCEEEEeccCCcEEEEEcCCCccccccc-cCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          106 SEYIACGSESNEVYVYHKEISKPVTWHR-FSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       106 ~~~~~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      .+++++.+.|.+.++||.+.  .++... +.         +| ...|+++.|..+.+ +++|+.|.+|+|||+++
T Consensus       326 QrLVvTsSrDtTFRLWDFRe--aI~sV~VFQ---------GH-tdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrN  387 (481)
T KOG0300|consen  326 QRLVVTSSRDTTFRLWDFRE--AIQSVAVFQ---------GH-TDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRN  387 (481)
T ss_pred             ceEEEEeccCceeEeccchh--hcceeeeec---------cc-ccceeEEEEecCCc-eeecCCCceEEEeeecc
Confidence            99999999999999999983  233222 22         23 77899999987655 88999999999999975

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4.9e-24  Score=135.44  Aligned_cols=164  Identities=16%  Similarity=0.220  Sum_probs=136.2

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-------------CCCcee--eecccCceeEEEEeeC
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-------------QSTAPC--VHGHKKAVSYVKFLSN   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~--~~~~~~~i~~~~~~~~   64 (179)
                      |.|+.+.+||+++++.+..+. |.+.|+.++|+.+. .+++.|             +..+|+  +......|.++.... 
T Consensus        78 GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~-  155 (307)
T KOG0316|consen   78 GGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE-  155 (307)
T ss_pred             CCCceEEEEEcccCeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc-
Confidence            468999999999999999996 88999999999988 455555             556666  667777888887654 


Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE  144 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~  144 (179)
                      ..+++||.||++|.||++.++....+-  ..+|+++.|+++++..+.++.|+.+++.|-.+++.+..+.-...       
T Consensus       156 heIvaGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn-------  226 (307)
T KOG0316|consen  156 HEIVAGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKN-------  226 (307)
T ss_pred             cEEEeeccCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccccc-------
Confidence            688999999999999999998766554  45799999999999999999999999999999999887653211       


Q ss_pred             cCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          145 DAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       145 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                         ...-...+++.....+++|+.||.+++|||.
T Consensus       227 ---~eykldc~l~qsdthV~sgSEDG~Vy~wdLv  257 (307)
T KOG0316|consen  227 ---MEYKLDCCLNQSDTHVFSGSEDGKVYFWDLV  257 (307)
T ss_pred             ---ceeeeeeeecccceeEEeccCCceEEEEEec
Confidence               2334556777788899999999999999985

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.93  E-value=2.2e-24  Score=147.22  Aligned_cols=178  Identities=19%  Similarity=0.272  Sum_probs=134.6

Q ss_pred             CCCccEEEEEcCCcee-------EEee-cCCCceeEEEEcCCCCeEEEEe-----------C--CCcee--eecccCcee
Q 038439            1 MAYGKVKVWCTRQEAS-------VLNI-DMKANICCVKYNPGSSNYIAKY-----------Q--STAPC--VHGHKKAVS   57 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~-------~~~~-~~~~~v~~~~~~~~~~~~~~~~-----------~--~~~~~--~~~~~~~i~   57 (179)
                      ++|++|.+||+.....       ...+ .|...|..++|+|....++++.           +  ..++-  ..+|.+.|+
T Consensus       197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn  276 (422)
T KOG0264|consen  197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN  276 (422)
T ss_pred             cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCcee
Confidence            5799999999875332       2233 3889999999999776666654           3  22222  778999999


Q ss_pred             EEEEeeC--CeEEEecCCCcEEEEecCC-CcceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCccccccc
Q 038439           58 YVKFLSN--DELASASTDSTLRLWDVKE-NLPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISKPVTWHR  133 (179)
Q Consensus        58 ~~~~~~~--~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~~~~~~  133 (179)
                      |++|+|-  ..|||||.|++|++||+|. .+++.++.+|...|..+.|+|+ ...+++++.|+.+.+||+..-...+...
T Consensus       277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e  356 (422)
T KOG0264|consen  277 CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE  356 (422)
T ss_pred             EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence            9999998  7889999999999999997 4678899999999999999997 4568899999999999998643332211


Q ss_pred             c--CCCCCCCCcccCCcceEEEEEEccCCCe-EEEEeCCCcEEEEeec
Q 038439          134 F--SSPDMDDTDEDAGSYFISAVCWKSDSPT-MLTANSQGTIKVLVLA  178 (179)
Q Consensus       134 ~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~iwd~~  178 (179)
                      .  ..+.......+.|...|..+.|+|+..+ +++.+.|+.+.||.+.
T Consensus       357 da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  357 DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             hhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            1  1111111122233888999999998765 5678889999999875

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.7e-24  Score=151.98  Aligned_cols=172  Identities=16%  Similarity=0.268  Sum_probs=140.1

Q ss_pred             CCccEEEEEcCCceeEEeec--CCCceeEEEEcCCCCeEEEEe-----------CCCcee---eecccCceeEEEEeeC-
Q 038439            2 AYGKVKVWCTRQEASVLNID--MKANICCVKYNPGSSNYIAKY-----------QSTAPC---VHGHKKAVSYVKFLSN-   64 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~---~~~~~~~i~~~~~~~~-   64 (179)
                      .+|.|.|||..+.+.+..+.  |...|-+++|+.   ..+.+|           +..+.+   +.+|...|..++|+++ 
T Consensus       237 ~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~  313 (484)
T KOG0305|consen  237 SDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDG  313 (484)
T ss_pred             cCCeEEEEehhhccccccccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCC
Confidence            57999999999888877775  688999999994   566666           222222   6789999999999999 


Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeC-CCEEEEec--cCCcEEEEEcCCCccccccccCCC----
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVN-SEYIACGS--ESNEVYVYHKEISKPVTWHRFSSP----  137 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~--~d~~v~vwd~~~~~~~~~~~~~~~----  137 (179)
                      .++++|+.|..+.|||....+++..+..|...|..++|+|- ...||+|+  .|+.|++||..++..+........    
T Consensus       314 ~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL  393 (484)
T KOG0305|consen  314 NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSL  393 (484)
T ss_pred             CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeE
Confidence            99999999999999999888899999999999999999995 66788875  499999999988766554332221    


Q ss_pred             ----------------------------CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          138 ----------------------------DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       138 ----------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                                                  .......+ |...|..++++|||..+++|+.|.++++|++
T Consensus       394 ~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~g-H~~RVl~la~SPdg~~i~t~a~DETlrfw~~  460 (484)
T KOG0305|consen  394 IWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLG-HTSRVLYLALSPDGETIVTGAADETLRFWNL  460 (484)
T ss_pred             EEcCCCCEEEEecCCCCCcEEEEeccccceeeeecC-CcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence                                        11122233 4888999999999999999999999999986

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.93  E-value=8.2e-24  Score=144.32  Aligned_cols=165  Identities=13%  Similarity=0.225  Sum_probs=137.9

Q ss_pred             CCCccEEEEEcCCceeEEe-ecCCCceeEEEEcCCCCeEEEEe----------CCCcee-eecc---cCceeEEEEeeC-
Q 038439            1 MAYGKVKVWCTRQEASVLN-IDMKANICCVKYNPGSSNYIAKY----------QSTAPC-VHGH---KKAVSYVKFLSN-   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~-~~~~---~~~i~~~~~~~~-   64 (179)
                      |.|..|+||.......... ..|.++|+.+..+|.|.+++.+.          +.+..+ ...+   .-.+++++|+|| 
T Consensus       280 Sad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg  359 (506)
T KOG0289|consen  280 SADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG  359 (506)
T ss_pred             CCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc
Confidence            4688999999876654433 45999999999999998888876          445555 2222   234899999999 


Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE  144 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~  144 (179)
                      ..|.+|..|+.|++||+.+...+..|.+|.++|..++|+.+|=+++++..|+.|++||+|..+..+.+....        
T Consensus       360 Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~--------  431 (506)
T KOG0289|consen  360 LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE--------  431 (506)
T ss_pred             eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc--------
Confidence            788899999999999999998899999999999999999999999999999999999999988777776532        


Q ss_pred             cCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439          145 DAGSYFISAVCWKSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       145 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  176 (179)
                         ...+.+++|.+.|.+|+.++.|=+|++++
T Consensus       432 ---~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  432 ---KKEVNSLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             ---cccceeEEEcCCCCeEEeecceeEEEEEe
Confidence               34699999999999999998876676665

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.93  E-value=2.4e-23  Score=139.15  Aligned_cols=132  Identities=13%  Similarity=0.259  Sum_probs=112.1

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeC-CCcee------------eecccCceeEEEEeeC-C
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQ-STAPC------------VHGHKKAVSYVKFLSN-D   65 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~-~~~~~------------~~~~~~~i~~~~~~~~-~   65 (179)
                      |.|..-.||+..+++....+. |+..|+++.|+.+| .++|+|. .++..            +...-..|.-+.|+|. .
T Consensus        83 GgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~  161 (399)
T KOG0296|consen   83 GGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDG-TLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAH  161 (399)
T ss_pred             CCCceEEEEEccCCcceeEecCCCCceEEEEEccCc-eEEEecCCCccEEEEEcccCceEEEeecccCceEEEEeccccc
Confidence            467889999999999777774 99999999999999 7888882 22222            3233455677889999 9


Q ss_pred             eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccc
Q 038439           66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHR  133 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~  133 (179)
                      .|+.|+.||.+.+|.+.+....+.+.+|..++++=.|.|+|+.++++..||+|++||+.+++++....
T Consensus       162 illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~  229 (399)
T KOG0296|consen  162 ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKIT  229 (399)
T ss_pred             EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEec
Confidence            99999999999999999877888999999999999999999999999999999999999998876554

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=3.8e-25  Score=146.66  Aligned_cols=167  Identities=20%  Similarity=0.330  Sum_probs=144.8

Q ss_pred             CCCccEEEEEcCCceeEEeec---------CCCceeEEEEcCCCCeEEEEe-----------CCCcee--e-ecccCcee
Q 038439            1 MAYGKVKVWCTRQEASVLNID---------MKANICCVKYNPGSSNYIAKY-----------QSTAPC--V-HGHKKAVS   57 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~-~~~~~~i~   57 (179)
                      |-||.|.+||+-+|+..+.+.         +..+|.|+.|+.|. ..+++|           .++.++  + ++|+..|+
T Consensus       232 SvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs-EMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt  310 (508)
T KOG0275|consen  232 SVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS-EMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVT  310 (508)
T ss_pred             cccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH-HHhhccCcCCcEEEEEEecchHHHHhhhhhccCee
Confidence            469999999999988665542         57889999999998 567776           556666  3 48999999


Q ss_pred             EEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCC
Q 038439           58 YVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSS  136 (179)
Q Consensus        58 ~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~  136 (179)
                      |+.|+.| ..+++++.|.++|+.-+.+++++..+++|.+.|+.+.|.++|..+++++.||+|++|+.++.+++.+++...
T Consensus       311 ~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~  390 (508)
T KOG0275|consen  311 CLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG  390 (508)
T ss_pred             EEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC
Confidence            9999999 999999999999999999999999999999999999999999999999999999999999999998887654


Q ss_pred             CCCCCCcccCCcceEEEEEEcc-CCCeEEEEeCCCcEEEEeec
Q 038439          137 PDMDDTDEDAGSYFISAVCWKS-DSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       137 ~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .          ...|+++..-| +...++++...++++|.++.
T Consensus       391 ~----------d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q  423 (508)
T KOG0275|consen  391 T----------DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ  423 (508)
T ss_pred             C----------cccceeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence            3          56788887776 55678888888899988764

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.92  E-value=9.6e-24  Score=143.99  Aligned_cols=166  Identities=15%  Similarity=0.173  Sum_probs=140.9

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee-eecccCceeEEEEeeC-Ce
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC-VHGHKKAVSYVKFLSN-DE   66 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~i~~~~~~~~-~~   66 (179)
                      |.|.++.++|....+.+..+. |...|+.+.|+|+....+...           ....+. ...|..+|+.+..+|. .+
T Consensus       238 G~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeY  317 (506)
T KOG0289|consen  238 GEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEY  317 (506)
T ss_pred             CCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcE
Confidence            568899999999999988886 788899999999875444443           122333 7889999999999999 99


Q ss_pred             EEEecCCCcEEEEecCCCcceeeecCC--CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439           67 LASASTDSTLRLWDVKENLPVRTFRGH--MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE  144 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~  144 (179)
                      |++++.|++..+.|++++..+......  .-.+++.+|+|||-.|.+|..|+.|++||+.+...+..+.           
T Consensus       318 llsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp-----------  386 (506)
T KOG0289|consen  318 LLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP-----------  386 (506)
T ss_pred             EEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC-----------
Confidence            999999999999999999887766542  2358899999999999999999999999999887554433           


Q ss_pred             cCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          145 DAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       145 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      + |.++|..++|+.+|-+|++++.|+.|++|||+
T Consensus       387 g-ht~~vk~i~FsENGY~Lat~add~~V~lwDLR  419 (506)
T KOG0289|consen  387 G-HTGPVKAISFSENGYWLATAADDGSVKLWDLR  419 (506)
T ss_pred             C-CCCceeEEEeccCceEEEEEecCCeEEEEEeh
Confidence            2 28899999999999999999999999999997

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=6.3e-24  Score=145.05  Aligned_cols=166  Identities=19%  Similarity=0.277  Sum_probs=129.5

Q ss_pred             CCccEEEEEcCCcee-----------EEeecCCCceeEEEEcCCCCeEEEEe---------------CCCc---ee--ee
Q 038439            2 AYGKVKVWCTRQEAS-----------VLNIDMKANICCVKYNPGSSNYIAKY---------------QSTA---PC--VH   50 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~~~~~~---------------~~~~---~~--~~   50 (179)
                      ..+.|.|||+.+..-           +.-..|+..-++++|++.....++++               ...+   +.  +.
T Consensus       145 ~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~  224 (422)
T KOG0264|consen  145 SSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFS  224 (422)
T ss_pred             CCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEee
Confidence            567899999765321           12234667788899999765555555               1111   22  88


Q ss_pred             cccCceeEEEEeeC--CeEEEecCCCcEEEEecC--CCcceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCC
Q 038439           51 GHKKAVSYVKFLSN--DELASASTDSTLRLWDVK--ENLPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEI  125 (179)
Q Consensus        51 ~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~  125 (179)
                      +|+..|..++|++.  .+|.+++.|+.+.|||.|  +.++....++|.+.+.+++|+|. +..||+|+.|++|.+||+|+
T Consensus       225 ~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn  304 (422)
T KOG0264|consen  225 GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN  304 (422)
T ss_pred             cCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh
Confidence            99999999999998  889999999999999999  56667778899999999999996 45578999999999999998


Q ss_pred             CccccccccCCCCCCCCcccCCcceEEEEEEccCC-CeEEEEeCCCcEEEEeec
Q 038439          126 SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDS-PTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~  178 (179)
                      ... ....+..          |...|.++.|+|.. ..|++++.|+.+.|||+.
T Consensus       305 L~~-~lh~~e~----------H~dev~~V~WSPh~etvLASSg~D~rl~vWDls  347 (422)
T KOG0264|consen  305 LNK-PLHTFEG----------HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS  347 (422)
T ss_pred             ccc-CceeccC----------CCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence            544 2222322          28899999999954 678888999999999985

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.1e-24  Score=157.44  Aligned_cols=167  Identities=16%  Similarity=0.277  Sum_probs=134.7

Q ss_pred             CCCccEEEEEcCC---ceeEEee-cCCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEee
Q 038439            1 MAYGKVKVWCTRQ---EASVLNI-DMKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLS   63 (179)
Q Consensus         1 ~~d~~i~vwd~~~---~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~   63 (179)
                      +..|.|.+||+..   .+.+..+ +|...++++.|++..++++++|           +..+..  +.+....|..+.|+|
T Consensus       107 s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp  186 (839)
T KOG0269|consen  107 STNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSP  186 (839)
T ss_pred             cCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeecc
Confidence            4579999999987   3344445 4999999999999999999998           112222  556778899999999


Q ss_pred             C--CeEEEecCCCcEEEEecCCC-cceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCC
Q 038439           64 N--DELASASTDSTLRLWDVKEN-LPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMD  140 (179)
Q Consensus        64 ~--~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~  140 (179)
                      .  ..|+++...|.+++||++.. ++...+..|.++|.++.|+|++.+||+|+.|+.|+|||..+++.........    
T Consensus       187 ~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT----  262 (839)
T KOG0269|consen  187 GYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT----  262 (839)
T ss_pred             CCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee----
Confidence            8  88999999999999999974 5667888999999999999999999999999999999998766544333321    


Q ss_pred             CCcccCCcceEEEEEEccCCCe-EEEEeC--CCcEEEEeec
Q 038439          141 DTDEDAGSYFISAVCWKSDSPT-MLTANS--QGTIKVLVLA  178 (179)
Q Consensus       141 ~~~~~~~~~~i~~~~~~~~~~~-l~~~~~--dg~i~iwd~~  178 (179)
                             ..++.++.|-|..++ |++++.  |-.|+|||++
T Consensus       263 -------iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr  296 (839)
T KOG0269|consen  263 -------IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR  296 (839)
T ss_pred             -------cceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence                   568999999997665 455443  7789999985

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.92  E-value=1.2e-23  Score=137.54  Aligned_cols=166  Identities=15%  Similarity=0.229  Sum_probs=138.8

Q ss_pred             CCCccEEEEEcCCce-eEEee-cCCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC--
Q 038439            1 MAYGKVKVWCTRQEA-SVLNI-DMKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN--   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~-~~~~~-~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~--   64 (179)
                      |.|..|.+|++.... -...+ .|.++|..+.|.+++..++.+|          .+++.+  .++|..-++.+.-+.-  
T Consensus        66 G~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~  145 (338)
T KOG0265|consen   66 GSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGP  145 (338)
T ss_pred             CCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCC
Confidence            579999999965432 22223 4899999999999999999988          566666  8889988888872222  


Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE  144 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~  144 (179)
                      .++.+++.|+++++||+++..+++++.. .-+++++.|...+..+.+|+-|+.|++||++..+......           
T Consensus       146 ~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~ls-----------  213 (338)
T KOG0265|consen  146 QLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLS-----------  213 (338)
T ss_pred             eEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeeccccCceeeeccccCcceEEee-----------
Confidence            5677899999999999999998888864 5678999999999999999999999999999888776544           


Q ss_pred             cCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          145 DAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       145 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      +| ...|+.+..+|+|.++.+-+.|.++++||+++
T Consensus       214 Gh-~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp  247 (338)
T KOG0265|consen  214 GH-ADTITGLSLSRYGSFLLSNSMDNTVRVWDVRP  247 (338)
T ss_pred             cc-cCceeeEEeccCCCccccccccceEEEEEecc
Confidence            22 77899999999999999999999999999875

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=7.6e-24  Score=155.48  Aligned_cols=168  Identities=19%  Similarity=0.272  Sum_probs=143.1

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-Ce
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DE   66 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~   66 (179)
                      |+|-.|+||++.+.+++.++- |-+-|..+.|++.-+.+++++          .+++++  +.+|..-|.|..|+|. ..
T Consensus        70 GDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDl  149 (1202)
T KOG0292|consen   70 GDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDL  149 (1202)
T ss_pred             CCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccce
Confidence            689999999999999998885 889999999999988888887          566677  9999999999999998 99


Q ss_pred             EEEecCCCcEEEEecCCCc-----------------------------ceeeecCCCCCeEEEEEeeCCCEEEEeccCCc
Q 038439           67 LASASTDSTLRLWDVKENL-----------------------------PVRTFRGHMNEKNFVGLTVNSEYIACGSESNE  117 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~~~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~  117 (179)
                      ++++|.|.+||+||+..-+                             ..+.+.+|...|+-++|+|.-..|++|+.|+.
T Consensus       150 IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq  229 (1202)
T KOG0292|consen  150 IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ  229 (1202)
T ss_pred             EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce
Confidence            9999999999999985310                             11335678889999999999999999999999


Q ss_pred             EEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          118 VYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       118 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      |++|.+...+....-...         +| ...|.++-|+|..+.+++.+.|+.|+|||+.
T Consensus       230 VKlWrmnetKaWEvDtcr---------gH-~nnVssvlfhp~q~lIlSnsEDksirVwDm~  280 (1202)
T KOG0292|consen  230 VKLWRMNETKAWEVDTCR---------GH-YNNVSSVLFHPHQDLILSNSEDKSIRVWDMT  280 (1202)
T ss_pred             eeEEEeccccceeehhhh---------cc-cCCcceEEecCccceeEecCCCccEEEEecc
Confidence            999998765543222222         22 7789999999999999999999999999985

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.92  E-value=4.8e-24  Score=140.43  Aligned_cols=177  Identities=15%  Similarity=0.164  Sum_probs=141.3

Q ss_pred             CCCccEEEEEcCCcee---EEeecCCCceeEEEEcCCCCeEEEEe----------CCCcee-----eecccCceeEEEEe
Q 038439            1 MAYGKVKVWCTRQEAS---VLNIDMKANICCVKYNPGSSNYIAKY----------QSTAPC-----VHGHKKAVSYVKFL   62 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~-----~~~~~~~i~~~~~~   62 (179)
                      +.|++|+++|+.+...   .+.++...+|.++.|+|.|..+++..          ++.++.     -.+|++.|+++.++
T Consensus       191 srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys  270 (430)
T KOG0640|consen  191 SRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYS  270 (430)
T ss_pred             cCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEec
Confidence            5799999999886543   34456778999999999996555444          334444     45799999999999


Q ss_pred             eC-CeEEEecCCCcEEEEecCCCcceeeecC-C-CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCC--
Q 038439           63 SN-DELASASTDSTLRLWDVKENLPVRTFRG-H-MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSP--  137 (179)
Q Consensus        63 ~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~-~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~--  137 (179)
                      +. ++.+++|.||.|++||--+++++.++.. | .+.|.+..|..+|+|+++.+.|..+++|.+.+++++..+.-.+.  
T Consensus       271 ~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tg  350 (430)
T KOG0640|consen  271 STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTG  350 (430)
T ss_pred             CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCccc
Confidence            99 9999999999999999999999988853 4 45688899999999999999999999999999988776542211  


Q ss_pred             ------------------------------------CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          138 ------------------------------------DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       138 ------------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                                                          .......+ |.+.+..+.-+|.+.-+++++.|-..++|--+
T Consensus       351 rq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slg-Hn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  351 RQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLG-HNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             chhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccC-CCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence                                                01111223 37788999999999999999999999999643

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.92  E-value=6.4e-24  Score=139.85  Aligned_cols=146  Identities=19%  Similarity=0.299  Sum_probs=122.7

Q ss_pred             cCCCceeEEEEcCCCCeEEEEe----------------------------CCCcee---eecccCceeEEEEeeC-CeEE
Q 038439           21 DMKANICCVKYNPGSSNYIAKY----------------------------QSTAPC---VHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus        21 ~~~~~v~~~~~~~~~~~~~~~~----------------------------~~~~~~---~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      .|++++.+.+|+||| .++++|                            ....|+   +..|..+|+++.|+|. ..|+
T Consensus       110 ~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILi  188 (430)
T KOG0640|consen  110 SHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILI  188 (430)
T ss_pred             ecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEE
Confidence            589999999999999 788888                            122244   7789999999999999 9999


Q ss_pred             EecCCCcEEEEecCCCcceeeec--CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccC
Q 038439           69 SASTDSTLRLWDVKENLPVRTFR--GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDA  146 (179)
Q Consensus        69 ~~~~d~~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  146 (179)
                      +++.|++|++||+......+.++  ....+|++++|+|.|.++++|..-..+++||+.+.++........        . 
T Consensus       189 S~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~--------q-  259 (430)
T KOG0640|consen  189 SGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDD--------Q-  259 (430)
T ss_pred             eccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccc--------c-
Confidence            99999999999998743333222  346789999999999999999999999999999988765443221        2 


Q ss_pred             CcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439          147 GSYFISAVCWKSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       147 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  176 (179)
                      |...|+++.+++.+++.++++.||.|++||
T Consensus       260 ht~ai~~V~Ys~t~~lYvTaSkDG~IklwD  289 (430)
T KOG0640|consen  260 HTGAITQVRYSSTGSLYVTASKDGAIKLWD  289 (430)
T ss_pred             cccceeEEEecCCccEEEEeccCCcEEeec
Confidence            288999999999999999999999999998

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.92  E-value=6.3e-24  Score=142.04  Aligned_cols=145  Identities=19%  Similarity=0.315  Sum_probs=130.0

Q ss_pred             CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcce
Q 038439           22 MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPV   87 (179)
Q Consensus        22 ~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~   87 (179)
                      |.+.|.|+++.|.. ..+++|           .+++..  +.+|...+..+++++- .++++++.|+.|+-||+...+.+
T Consensus       150 HlgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvI  228 (460)
T KOG0285|consen  150 HLGWVRSVAVDPGN-EWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVI  228 (460)
T ss_pred             ccceEEEEeeCCCc-eeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhH
Confidence            78899999999986 677777           344444  8899999999999999 99999999999999999999999


Q ss_pred             eeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEe
Q 038439           88 RTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN  167 (179)
Q Consensus        88 ~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  167 (179)
                      +.+.+|-+.|.+++.+|.-..|++|+.|..+++||+++...+..+.           +| ...|.++.+.|-...+++|+
T Consensus       229 R~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-----------GH-~~~V~~V~~~~~dpqvit~S  296 (460)
T KOG0285|consen  229 RHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-----------GH-TNPVASVMCQPTDPQVITGS  296 (460)
T ss_pred             HHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-----------CC-CCcceeEEeecCCCceEEec
Confidence            9999999999999999999999999999999999999988776654           22 78899999999888899999


Q ss_pred             CCCcEEEEeecC
Q 038439          168 SQGTIKVLVLAA  179 (179)
Q Consensus       168 ~dg~i~iwd~~~  179 (179)
                      .|++|++||++.
T Consensus       297 ~D~tvrlWDl~a  308 (460)
T KOG0285|consen  297 HDSTVRLWDLRA  308 (460)
T ss_pred             CCceEEEeeecc
Confidence            999999999863

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=2.8e-23  Score=136.12  Aligned_cols=175  Identities=15%  Similarity=0.201  Sum_probs=133.8

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe----------CCCcee-eecccCceeEEEEeeC-CeEE
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY----------QSTAPC-VHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      ++||++++||+........+.++.++.+++|.++. ..++.+          +++... +..|..+|.|+.+.+. +.++
T Consensus        32 sWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vI  110 (323)
T KOG1036|consen   32 SWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVI  110 (323)
T ss_pred             eccCcEEEEeccchhhhhheecCCceeeeeccCCc-eEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEE
Confidence            58999999999999888889999999999999865 555555          333333 7789999999999998 9999


Q ss_pred             EecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccC------------C
Q 038439           69 SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFS------------S  136 (179)
Q Consensus        69 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~------------~  136 (179)
                      +|+.|++|++||.+.......+.. ...|.++..  .++.|++|+.+..+.+||+++.+...+.+..            .
T Consensus       111 sgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p  187 (323)
T KOG1036|consen  111 SGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP  187 (323)
T ss_pred             EcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEec
Confidence            999999999999998666666653 447777766  5778999999999999999975433211100            0


Q ss_pred             --C------------------C-----CCCCcccC--------CcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          137 --P------------------D-----MDDTDEDA--------GSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       137 --~------------------~-----~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                        .                  .     ....+.-|        --.+|++++|+|-.+.|++|+.||.|.+||+.+
T Consensus       188 n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~  263 (323)
T KOG1036|consen  188 NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFN  263 (323)
T ss_pred             CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcc
Confidence              0                  0     00011111        034789999999999999999999999999854

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.6e-22  Score=132.97  Aligned_cols=166  Identities=17%  Similarity=0.194  Sum_probs=134.6

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe------------CCCcee--eecccCceeEEEEeeC-
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY------------QSTAPC--VHGHKKAVSYVKFLSN-   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~------------~~~~~~--~~~~~~~i~~~~~~~~-   64 (179)
                      ++|.+++|||..++++++++. ++..+..++|......++.+.            .+.+.+  +.||...|+.++.+|- 
T Consensus        33 s~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~  112 (311)
T KOG1446|consen   33 SEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKD  112 (311)
T ss_pred             cCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCC
Confidence            467899999999999999997 556788888876664555554            344555  8999999999999999 


Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCC--ccccccccCCCCCCCC
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEIS--KPVTWHRFSSPDMDDT  142 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~--~~~~~~~~~~~~~~~~  142 (179)
                      ..+++++.|++|++||++..++...+.....  ..++|.|+|-++|++.....|++||+|+.  .+...+.+....    
T Consensus       113 d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~----  186 (311)
T KOG1446|consen  113 DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDND----  186 (311)
T ss_pred             CeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCC----
Confidence            9999999999999999998777666653333  45899999999999998889999999984  445555443221    


Q ss_pred             cccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          143 DEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                           ....+.+.|+|||++|+.++..+.+++.|-
T Consensus       187 -----~~ew~~l~FS~dGK~iLlsT~~s~~~~lDA  216 (311)
T KOG1446|consen  187 -----EAEWTDLEFSPDGKSILLSTNASFIYLLDA  216 (311)
T ss_pred             -----ccceeeeEEcCCCCEEEEEeCCCcEEEEEc
Confidence                 567899999999999999999999998773

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.6e-23  Score=142.74  Aligned_cols=176  Identities=17%  Similarity=0.248  Sum_probs=140.7

Q ss_pred             CCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-------------------CCCcee--eecccCceeEE
Q 038439            2 AYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-------------------QSTAPC--VHGHKKAVSYV   59 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-------------------~~~~~~--~~~~~~~i~~~   59 (179)
                      -.|.|++|.+.+|+.+..+. |-..|+++.|+.||..++.+|                   .+.+++  +.+|+-+|+++
T Consensus       101 i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl  180 (476)
T KOG0646|consen  101 ISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDL  180 (476)
T ss_pred             ccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEE
Confidence            45899999999999988886 889999999999997777776                   234455  88999999999


Q ss_pred             EEeeC---CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcc--c--ccc
Q 038439           60 KFLSN---DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKP--V--TWH  132 (179)
Q Consensus        60 ~~~~~---~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~--~--~~~  132 (179)
                      ...+.   ..++|+|.|.++++||+..+..+.++. ....+.+++..|-++.++.|+++|.|.+.++.....  .  ...
T Consensus       181 ~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k  259 (476)
T KOG0646|consen  181 QIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQK  259 (476)
T ss_pred             EecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccc
Confidence            88766   789999999999999999999988886 467789999999999999999999999988765331  1  000


Q ss_pred             -ccCCCCCCCCcccC-CcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          133 -RFSSPDMDDTDEDA-GSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       133 -~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                       ..........+.+| +...|+|++.+-||..|++|+.||.++|||+.
T Consensus       260 ~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~  307 (476)
T KOG0646|consen  260 GRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY  307 (476)
T ss_pred             ccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence             01111112222233 12489999999999999999999999999975

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2.2e-23  Score=143.72  Aligned_cols=164  Identities=19%  Similarity=0.247  Sum_probs=135.2

Q ss_pred             CCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeCCC-----------c-ee-eecccCceeEEEEeeC--C
Q 038439            2 AYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQST-----------A-PC-VHGHKKAVSYVKFLSN--D   65 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~-----------~-~~-~~~~~~~i~~~~~~~~--~   65 (179)
                      +.|.|+|+|..+...+..+. |+.++..+.|+|.+..+++.|..+           . .+ +.+|+..|.|.+|+|.  .
T Consensus        88 ~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~h  167 (487)
T KOG0310|consen   88 ESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDH  167 (487)
T ss_pred             CcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCe
Confidence            46899999977655666664 999999999999998898888211           1 22 8899999999999998  5


Q ss_pred             eEEEecCCCcEEEEecCCC-cceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439           66 ELASASTDSTLRLWDVKEN-LPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE  144 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~  144 (179)
                      .++||+.||.|++||.+.. ..+.++. |..+|..+.+-|.|..|++++. +.|++||+-+|........          
T Consensus       168 ivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~----------  235 (487)
T KOG0310|consen  168 IVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMF----------  235 (487)
T ss_pred             EEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhh----------
Confidence            7999999999999999986 5666664 8899999999999999998874 6799999997655433222          


Q ss_pred             cCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          145 DAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       145 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      . |...|+|+++..++..|++++-|+.+++||+.
T Consensus       236 ~-H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t  268 (487)
T KOG0310|consen  236 N-HNKTVTCLRLASDSTRLLSGSLDRHVKVFDTT  268 (487)
T ss_pred             c-ccceEEEEEeecCCceEeecccccceEEEEcc
Confidence            1 26689999999999999999999999999964

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.92  E-value=1.2e-24  Score=144.36  Aligned_cols=146  Identities=20%  Similarity=0.348  Sum_probs=126.4

Q ss_pred             cCCCceeEEEEcCCCCeEEEEe-----------CCCc---ee-------eecccCceeEEEEeeC-CeEEEecCCCcEEE
Q 038439           21 DMKANICCVKYNPGSSNYIAKY-----------QSTA---PC-------VHGHKKAVSYVKFLSN-DELASASTDSTLRL   78 (179)
Q Consensus        21 ~~~~~v~~~~~~~~~~~~~~~~-----------~~~~---~~-------~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~i   78 (179)
                      ..++.+.|..|+|||+ ++++|           .+++   .+       +--+..+|.|+.|+.| ..+++|+.||.|++
T Consensus       211 g~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv  289 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV  289 (508)
T ss_pred             ccccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence            3567789999999995 55555           1121   11       3346789999999999 99999999999999


Q ss_pred             EecCCCcceeeec-CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEc
Q 038439           79 WDVKENLPVRTFR-GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWK  157 (179)
Q Consensus        79 wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  157 (179)
                      |.++++.+++.|. .|...|+++.|+.|+..+++++.|.++++.-+++|+.+..++           +| ...|+...|.
T Consensus       290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr-----------GH-sSyvn~a~ft  357 (508)
T KOG0275|consen  290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR-----------GH-SSYVNEATFT  357 (508)
T ss_pred             EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc-----------Cc-cccccceEEc
Confidence            9999999999997 799999999999999999999999999999999999987765           22 8889999999


Q ss_pred             cCCCeEEEEeCCCcEEEEeecC
Q 038439          158 SDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       158 ~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      ++|..+++++.||+|++|+..+
T Consensus       358 ~dG~~iisaSsDgtvkvW~~Kt  379 (508)
T KOG0275|consen  358 DDGHHIISASSDGTVKVWHGKT  379 (508)
T ss_pred             CCCCeEEEecCCccEEEecCcc
Confidence            9999999999999999999753

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.91  E-value=4e-24  Score=142.80  Aligned_cols=158  Identities=18%  Similarity=0.319  Sum_probs=133.7

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeCCe
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSNDE   66 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~~~   66 (179)
                      ..|++|+|||.++..+++.+. |.+.|.|+.|..   .++++|           ++++++  +..|...|..+.|+. ++
T Consensus       214 lrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n-g~  289 (499)
T KOG0281|consen  214 LRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN-GY  289 (499)
T ss_pred             cccCceEEeccccHHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC-CE
Confidence            369999999999999888874 999999999975   466666           778888  888999999999875 79


Q ss_pred             EEEecCCCcEEEEecCCCc---ceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCc
Q 038439           67 LASASTDSTLRLWDVKENL---PVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTD  143 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~  143 (179)
                      ++++|.|.++.+||+....   +.+.+.+|...|+.+.|+  .++|++++.|++|++|+..+++.+..+.-         
T Consensus       290 mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~g---------  358 (499)
T KOG0281|consen  290 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNG---------  358 (499)
T ss_pred             EEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhc---------
Confidence            9999999999999998754   334567899999999984  56999999999999999999998876532         


Q ss_pred             ccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          144 EDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       144 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                        | ...|-|+.+  .++++++|+.|.+|++||++
T Consensus       359 --H-kRGIAClQY--r~rlvVSGSSDntIRlwdi~  388 (499)
T KOG0281|consen  359 --H-KRGIACLQY--RDRLVVSGSSDNTIRLWDIE  388 (499)
T ss_pred             --c-cccceehhc--cCeEEEecCCCceEEEEecc
Confidence              2 667877766  68999999999999999975

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.91  E-value=4.9e-23  Score=132.94  Aligned_cols=152  Identities=18%  Similarity=0.211  Sum_probs=125.5

Q ss_pred             EEeecCCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCC
Q 038439           17 VLNIDMKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKE   83 (179)
Q Consensus        17 ~~~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~   83 (179)
                      +....|..+++.+.|+.+|+.++.++          .+++.+  +.+|++.|+|+...-+ ..+++|+.|.++++||+.+
T Consensus         4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t   83 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET   83 (327)
T ss_pred             cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence            33345899999999999998888888          456777  8999999999999888 9999999999999999998


Q ss_pred             Cccee-----------------------------------------------------eecCCCCCeEEEEEeeCCCEEE
Q 038439           84 NLPVR-----------------------------------------------------TFRGHMNEKNFVGLTVNSEYIA  110 (179)
Q Consensus        84 ~~~~~-----------------------------------------------------~~~~~~~~v~~~~~~~~~~~~~  110 (179)
                      ++++.                                                     .+..+.+.++.+-|.|-+++|+
T Consensus        84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii  163 (327)
T KOG0643|consen   84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII  163 (327)
T ss_pred             CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence            74322                                                     2233445677788999999999


Q ss_pred             EeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          111 CGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       111 ~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      +|.+||.|..||+++++....-. .         . |...|+.++++|+..++++++.|.+-++||+++
T Consensus       164 ~Ghe~G~is~~da~~g~~~v~s~-~---------~-h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t  221 (327)
T KOG0643|consen  164 AGHEDGSISIYDARTGKELVDSD-E---------E-HSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT  221 (327)
T ss_pred             EecCCCcEEEEEcccCceeeech-h---------h-hccccccccccCCcceEEecccCccceeeeccc
Confidence            99999999999999986543221 1         1 277899999999999999999999999999764

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.91  E-value=7.8e-23  Score=137.43  Aligned_cols=164  Identities=19%  Similarity=0.251  Sum_probs=133.8

Q ss_pred             CCCccEEEEEcCCceeEEee-cCCCceeEEEEcCCCCe---EEEEe----------CCCcee------eecccCceeEEE
Q 038439            1 MAYGKVKVWCTRQEASVLNI-DMKANICCVKYNPGSSN---YIAKY----------QSTAPC------VHGHKKAVSYVK   60 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~---~~~~~----------~~~~~~------~~~~~~~i~~~~   60 (179)
                      ++||.+++||.. |+..+.+ .|.++|.+++|.-..+.   +++++          +.++..      ..+|.+.|.+++
T Consensus       122 sYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVs  200 (423)
T KOG0313|consen  122 SYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVS  200 (423)
T ss_pred             ecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEE
Confidence            479999999965 5555555 59999998888543322   55555          222221      459999999999


Q ss_pred             EeeC-CeEEEecCCCcEEEEecCC-------------------------CcceeeecCCCCCeEEEEEeeCCCEEEEecc
Q 038439           61 FLSN-DELASASTDSTLRLWDVKE-------------------------NLPVRTFRGHMNEKNFVGLTVNSEYIACGSE  114 (179)
Q Consensus        61 ~~~~-~~l~~~~~d~~v~iwd~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  114 (179)
                      ..++ ..+++||.|.++.+|+...                         +.++.++.+|..+|.++.|++ ...+++++.
T Consensus       201 v~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~Sw  279 (423)
T KOG0313|consen  201 VDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSW  279 (423)
T ss_pred             ecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecc
Confidence            9999 9999999999999999321                         135677889999999999998 678999999


Q ss_pred             CCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          115 SNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       115 d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      |.+|+.||+.+++.+.....             ...++++..+|..++|++|+.|..|++||.++
T Consensus       280 DHTIk~WDletg~~~~~~~~-------------~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~  331 (423)
T KOG0313|consen  280 DHTIKVWDLETGGLKSTLTT-------------NKSLNCISYSPLSKLLASGSSDRHIRLWDPRT  331 (423)
T ss_pred             cceEEEEEeecccceeeeec-------------CcceeEeecccccceeeecCCCCceeecCCCC
Confidence            99999999999998877654             66799999999999999999999999999874

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=7.4e-24  Score=143.93  Aligned_cols=165  Identities=18%  Similarity=0.318  Sum_probs=127.2

Q ss_pred             CCccEEEEEcCCceeEEeecCC--CceeEEEEcCCCCeEEEEe--------------------------------CCCce
Q 038439            2 AYGKVKVWCTRQEASVLNIDMK--ANICCVKYNPGSSNYIAKY--------------------------------QSTAP   47 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~--------------------------------~~~~~   47 (179)
                      .|..+.+||+.++.+...+.+.  ..+.+++|.|||..+++.+                                ..++.
T Consensus       289 ~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~  368 (519)
T KOG0293|consen  289 FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKY  368 (519)
T ss_pred             chHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcE
Confidence            4667899999999998888755  7799999999996655554                                11111


Q ss_pred             e---------------------eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEE--Ee
Q 038439           48 C---------------------VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVG--LT  103 (179)
Q Consensus        48 ~---------------------~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~  103 (179)
                      +                     +..-..+|+++..+.+ .++++.-.+..+++||++..+.++.+.+|...-.-+.  |-
T Consensus       369 vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFg  448 (519)
T KOG0293|consen  369 VLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFG  448 (519)
T ss_pred             EEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccC
Confidence            1                     1112346778888888 6677777788899999998888888988876544443  33


Q ss_pred             e-CCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEcc-CCCeEEEEeCCCcEEEEeec
Q 038439          104 V-NSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKS-DSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       104 ~-~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~  178 (179)
                      - +..++++|++|+.|+||+..+++++..+.           +| ...|++++|+| +..++|++++||+|+||-..
T Consensus       449 g~~~~fiaSGSED~kvyIWhr~sgkll~~Ls-----------GH-s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  449 GGNDKFIASGSEDSKVYIWHRISGKLLAVLS-----------GH-SKTVNCVSWNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             CCCcceEEecCCCceEEEEEccCCceeEeec-----------CC-cceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence            2 45789999999999999999999987754           22 77899999999 56789999999999999764

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=2.1e-22  Score=131.89  Aligned_cols=176  Identities=20%  Similarity=0.257  Sum_probs=128.4

Q ss_pred             CCCccEEEEEcCC-ceeEE--eecCCCceeEEEEcCCCCeEEEEe----------CCCcee-eecccCceeEEEEeeC--
Q 038439            1 MAYGKVKVWCTRQ-EASVL--NIDMKANICCVKYNPGSSNYIAKY----------QSTAPC-VHGHKKAVSYVKFLSN--   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~-~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~i~~~~~~~~--   64 (179)
                      |.||+|++|+++. +..+-  ...+.++|.+++|+.+|...++.+          .+++.. +..|.++|..++|-+.  
T Consensus        47 SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~  126 (347)
T KOG0647|consen   47 SWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMN  126 (347)
T ss_pred             ccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCC
Confidence            6899999999987 34332  235899999999999997777766          344444 7889999999999988  


Q ss_pred             -CeEEEecCCCcEEEEecCCCcceeeecC-------------------------------------C----CCCeEEEEE
Q 038439           65 -DELASASTDSTLRLWDVKENLPVRTFRG-------------------------------------H----MNEKNFVGL  102 (179)
Q Consensus        65 -~~l~~~~~d~~v~iwd~~~~~~~~~~~~-------------------------------------~----~~~v~~~~~  102 (179)
                       ..|+|||.|++|+.||.+...++.++.-                                     +    .-.+++++.
T Consensus       127 ~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~  206 (347)
T KOG0647|consen  127 YQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVAC  206 (347)
T ss_pred             cceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEE
Confidence             4899999999999999998654433321                                     1    114566777


Q ss_pred             eeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          103 TVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       103 ~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      ..|...++.|+-+|.+.+..+..+.+...+.+.-|........ .-..|++++|+|....|++++.||++.+||-
T Consensus       207 f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~-~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDk  280 (347)
T KOG0647|consen  207 FQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVND-DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDK  280 (347)
T ss_pred             EecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCC-ceEEecceEeecccceEEEecCCceEEEecc
Confidence            7776666777777777777776654444444443322111111 1346889999999999999999999999984

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=2.6e-23  Score=143.40  Aligned_cols=159  Identities=16%  Similarity=0.246  Sum_probs=132.1

Q ss_pred             cEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe---------C-CCcee---eecccCceeEEEEeeC--CeEE
Q 038439            5 KVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY---------Q-STAPC---VHGHKKAVSYVKFLSN--DELA   68 (179)
Q Consensus         5 ~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~---------~-~~~~~---~~~~~~~i~~~~~~~~--~~l~   68 (179)
                      .+.||+..+....+.+. .+..+.++.|-.|| .++++|         + ..+.+   +.+|+.++..+.|+|.  ..++
T Consensus        49 rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG-~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~  127 (487)
T KOG0310|consen   49 RVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDG-RLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLV  127 (487)
T ss_pred             EEEEEecchhhhhhhHHhhccceeEEEeecCC-eEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEE
Confidence            57788887777777664 78899999999999 788877         1 11112   7899999999999999  6788


Q ss_pred             EecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCC-ccccccccCCCCCCCCcccC
Q 038439           69 SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEIS-KPVTWHRFSSPDMDDTDEDA  146 (179)
Q Consensus        69 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~  146 (179)
                      +|+.|+.+++||+.+......+.+|...|++.+|+|- +..+++|+.||.|++||.+.. ..+.++..            
T Consensus       128 s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnh------------  195 (487)
T KOG0310|consen  128 SGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNH------------  195 (487)
T ss_pred             ecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecC------------
Confidence            9999999999999998865688899999999999996 557899999999999999987 44444433            


Q ss_pred             CcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          147 GSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       147 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                       +.+|..+.+-|.|..+++++. +.++|||+-
T Consensus       196 -g~pVe~vl~lpsgs~iasAgG-n~vkVWDl~  225 (487)
T KOG0310|consen  196 -GCPVESVLALPSGSLIASAGG-NSVKVWDLT  225 (487)
T ss_pred             -CCceeeEEEcCCCCEEEEcCC-CeEEEEEec
Confidence             778999999999998888775 479999985

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.91  E-value=2.1e-22  Score=134.72  Aligned_cols=150  Identities=15%  Similarity=0.223  Sum_probs=128.2

Q ss_pred             EEee-cCCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEec
Q 038439           17 VLNI-DMKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDV   81 (179)
Q Consensus        17 ~~~~-~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~   81 (179)
                      +..| .|+.+|.+++.+|+. +++++|           .++...  +.+|+..|+++.|+.+ .+|+||..+|.|+||+.
T Consensus        57 ~~tF~~H~~svFavsl~P~~-~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNN-NLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             eeehhhcCCceEEEEeCCCC-ceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence            3344 499999999999955 788887           344444  8999999999999999 99999999999999999


Q ss_pred             CCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCC
Q 038439           82 KENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSP  161 (179)
Q Consensus        82 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  161 (179)
                      .++.....+...-..+.=+.|+|.+..|+.|+.||.+.+|.+.+....+.+.           +| ..++++-.|.|+|+
T Consensus       136 stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~-----------Gh-~~~ct~G~f~pdGK  203 (399)
T KOG0296|consen  136 STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS-----------GH-NSPCTCGEFIPDGK  203 (399)
T ss_pred             ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec-----------CC-CCCcccccccCCCc
Confidence            9998887776556677889999999999999999999999999865544433           22 77899999999999


Q ss_pred             eEEEEeCCCcEEEEeecC
Q 038439          162 TMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       162 ~l~~~~~dg~i~iwd~~~  179 (179)
                      .++++..||+|++||+.+
T Consensus       204 r~~tgy~dgti~~Wn~kt  221 (399)
T KOG0296|consen  204 RILTGYDDGTIIVWNPKT  221 (399)
T ss_pred             eEEEEecCceEEEEecCC
Confidence            999999999999999864

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=4.7e-23  Score=137.94  Aligned_cols=164  Identities=15%  Similarity=0.249  Sum_probs=126.8

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-------------------------------------
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-------------------------------------   42 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-------------------------------------   42 (179)
                      |-||.|+|||+.+.+++.++. |.+.|..+++.. + .++.+|                                     
T Consensus        86 s~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~-~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~Fa  163 (433)
T KOG0268|consen   86 SCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-T-SFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFA  163 (433)
T ss_pred             ccCceEEEEehhhhhhhheeecccCceeeEEecc-c-ceEEecCCcceeeeeccCCcceeeecccccccccccccccccc
Confidence            469999999999999999987 778999999987 2 566666                                     


Q ss_pred             CCCcee-------------eecccCceeEEEEeeC--CeEEEecCCCcEEEEecCCCcce--------------------
Q 038439           43 QSTAPC-------------VHGHKKAVSYVKFLSN--DELASASTDSTLRLWDVKENLPV--------------------   87 (179)
Q Consensus        43 ~~~~~~-------------~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~--------------------   87 (179)
                      .-|+.+             +.=....|.++.|+|.  ..|+++..|+.|.+||+++..++                    
T Consensus       164 TcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafn  243 (433)
T KOG0268|consen  164 TCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFN  243 (433)
T ss_pred             ccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccc
Confidence            011111             1112345677888888  77888889999999999876433                    


Q ss_pred             ----------------------eeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCccc
Q 038439           88 ----------------------RTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDED  145 (179)
Q Consensus        88 ----------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  145 (179)
                                            ..+++|.+.|.+++|+|.|+.|++|+.|.+|+||..+.+.....+....         
T Consensus       244 F~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkR---------  314 (433)
T KOG0268|consen  244 FVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKR---------  314 (433)
T ss_pred             eeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhh---------
Confidence                                  2344577789999999999999999999999999998765544333221         


Q ss_pred             CCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          146 AGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       146 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                        -..|.++.|+.|.+++++|+.|+.|++|.-
T Consensus       315 --Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  315 --MQHVFCVKYSMDSKYIISGSDDGNVRLWKA  344 (433)
T ss_pred             --hheeeEEEEeccccEEEecCCCcceeeeec
Confidence              346999999999999999999999999964

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.91  E-value=1e-22  Score=147.91  Aligned_cols=160  Identities=17%  Similarity=0.269  Sum_probs=134.1

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeCCe
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSNDE   66 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~~~   66 (179)
                      |.|.++++||..++++...+. |.+.|.++...+.   +++.|           .++..+  +.+|..+|.++... ..+
T Consensus       268 S~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-~~~  343 (537)
T KOG0274|consen  268 STDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-EPL  343 (537)
T ss_pred             ecCCcEEeEecCCCcEEEEecCCCceEEEEEccCc---eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-CCE
Confidence            469999999999999999997 8889999988763   34443           556666  66699999999887 589


Q ss_pred             EEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCC-ccccccccCCCCCCCCccc
Q 038439           67 LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEIS-KPVTWHRFSSPDMDDTDED  145 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~  145 (179)
                      +++|+.|++|++||+.+++++..+.+|...|.++.+.+. ..+++|+.|+.|++||+++. +++..+..           
T Consensus       344 lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~-----------  411 (537)
T KOG0274|consen  344 LVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQG-----------  411 (537)
T ss_pred             EEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcC-----------
Confidence            999999999999999999999999999999999987654 88999999999999999999 77766542           


Q ss_pred             CCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          146 AGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       146 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                       |..-+..+  ...++.|++++.|+.|++||.++
T Consensus       412 -h~~~v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~  442 (537)
T KOG0274|consen  412 -HTSLVSSL--LLRDNFLVSSSADGTIKLWDAEE  442 (537)
T ss_pred             -Cccccccc--ccccceeEeccccccEEEeeccc
Confidence             14445444  34688999999999999999753

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=3e-22  Score=145.71  Aligned_cols=168  Identities=11%  Similarity=0.153  Sum_probs=134.7

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-----------CCCcee-eecccCceeEEEEeeC-CeE
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-----------QSTAPC-VHGHKKAVSYVKFLSN-DEL   67 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~i~~~~~~~~-~~l   67 (179)
                      |-|.+|+||++...++++.|.|.+-|+|++|+|...++++.|           ...+.+ ...-..-|++++|.|+ +..
T Consensus       387 SMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~a  466 (712)
T KOG0283|consen  387 SMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGA  466 (712)
T ss_pred             cccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceE
Confidence            459999999999999999999999999999999888899988           122222 4444578999999999 899


Q ss_pred             EEecCCCcEEEEecCCCcceeeecC--C------CCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCccccccccCCCC
Q 038439           68 ASASTDSTLRLWDVKENLPVRTFRG--H------MNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISKPVTWHRFSSPD  138 (179)
Q Consensus        68 ~~~~~d~~v~iwd~~~~~~~~~~~~--~------~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~  138 (179)
                      +.|+.+|..++|+....+....+..  +      ...|+.+.|.|. ...+++.+.|..|+|+|.+..+++..++-... 
T Consensus       467 vIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n-  545 (712)
T KOG0283|consen  467 VIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN-  545 (712)
T ss_pred             EEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc-
Confidence            9999999999999987665543321  1      226999999984 44688889999999999988888776653211 


Q ss_pred             CCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          139 MDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       139 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                               ...-....|+.||++|++++.|..|++|++.
T Consensus       546 ---------~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  546 ---------TSSQISASFSSDGKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             ---------CCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence                     2233557789999999999999999999963

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.90  E-value=2.1e-22  Score=129.58  Aligned_cols=166  Identities=13%  Similarity=0.182  Sum_probs=128.8

Q ss_pred             CCCccEEEEEcCCceeEEee---cCCCceeEEEEcCCCCeEEEEe-----------CCCcee-eecccCceeEEEEeeC-
Q 038439            1 MAYGKVKVWCTRQEASVLNI---DMKANICCVKYNPGSSNYIAKY-----------QSTAPC-VHGHKKAVSYVKFLSN-   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~i~~~~~~~~-   64 (179)
                      +.|+++.+|+++..+..+..   .|.+.|-.++|+|..+.++++.           +.++++ ....++.=..+.|+|+ 
T Consensus        39 s~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g  118 (313)
T KOG1407|consen   39 SFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDG  118 (313)
T ss_pred             ccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCC
Confidence            46899999999887655554   3778899999999887777776           444444 2222222335678888 


Q ss_pred             CeEEEecCCCcEEEEecCCC-----------------------------------------cceeeecCCCCCeEEEEEe
Q 038439           65 DELASASTDSTLRLWDVKEN-----------------------------------------LPVRTFRGHMNEKNFVGLT  103 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~-----------------------------------------~~~~~~~~~~~~v~~~~~~  103 (179)
                      ++++.++.|..|...|.++.                                         +++..++.|.....|+.|+
T Consensus       119 ~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~  198 (313)
T KOG1407|consen  119 EYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFD  198 (313)
T ss_pred             CEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEEC
Confidence            88888888888888777653                                         4567778899999999999


Q ss_pred             eCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          104 VNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       104 ~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      |+|++||+|+.|..+.+||+...-++..+...            .-+|..++|+.+|++||+++.|..|-|=+++
T Consensus       199 p~GryfA~GsADAlvSLWD~~ELiC~R~isRl------------dwpVRTlSFS~dg~~lASaSEDh~IDIA~ve  261 (313)
T KOG1407|consen  199 PDGRYFATGSADALVSLWDVDELICERCISRL------------DWPVRTLSFSHDGRMLASASEDHFIDIAEVE  261 (313)
T ss_pred             CCCceEeeccccceeeccChhHhhhheeeccc------------cCceEEEEeccCcceeeccCccceEEeEecc
Confidence            99999999999999999999875555443321            6689999999999999999999988775544

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.90  E-value=1.1e-21  Score=142.56  Aligned_cols=162  Identities=20%  Similarity=0.266  Sum_probs=139.2

Q ss_pred             CCCccEEEEEcCCceeEEe-ec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeCC
Q 038439            1 MAYGKVKVWCTRQEASVLN-ID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSND   65 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~-~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~~   65 (179)
                      +.|++|++||..++..+.. +. |.+.|.++++..-+ .+++.|           .+++++  +.+|...|.++...+ .
T Consensus       225 s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~-~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~-~  302 (537)
T KOG0274|consen  225 SDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGG-DKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP-F  302 (537)
T ss_pred             CCCceeEEeecccceEEEeeccCCCCCceeEEEecCC-CEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC-c
Confidence            4688999999999988777 64 99999999998744 555555           566777  889999999987654 5


Q ss_pred             eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCccc
Q 038439           66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDED  145 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  145 (179)
                      .+++|+.|.+|++|++.++..+..+.+|..+|+++..+  +.++++|+.|+.|++||+.+++++..+.-           
T Consensus       303 ~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~g-----------  369 (537)
T KOG0274|consen  303 LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSG-----------  369 (537)
T ss_pred             eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecC-----------
Confidence            77788999999999999999999999999999999997  88999999999999999999998877652           


Q ss_pred             CCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          146 AGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       146 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                       |...|.++.+.+. +.+++|+.|+.|++||+++
T Consensus       370 -H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~  401 (537)
T KOG0274|consen  370 -HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRT  401 (537)
T ss_pred             -CcceEEEEEecCc-ceEEeeeeccceEeecCCc
Confidence             2889999988655 8899999999999999874

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=6e-22  Score=145.61  Aligned_cols=168  Identities=16%  Similarity=0.156  Sum_probs=136.6

Q ss_pred             CCCccEEEEEcCCceeEEee-cCCCceeEEEEcCCCCeEEEEe-----------CCCcee-eecccCceeEEEEeeC-Ce
Q 038439            1 MAYGKVKVWCTRQEASVLNI-DMKANICCVKYNPGSSNYIAKY-----------QSTAPC-VHGHKKAVSYVKFLSN-DE   66 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~i~~~~~~~~-~~   66 (179)
                      +.+++|.+|...+++.--.+ ...-++++++|+-+|..+++.+           +..... +.+|.++|.++.|+|. .+
T Consensus        73 s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~f  152 (933)
T KOG1274|consen   73 SEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNF  152 (933)
T ss_pred             eccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCE
Confidence            46788999988887755333 4677899999999995555554           122222 8899999999999999 99


Q ss_pred             EEEecCCCcEEEEecCCCcceeeecCC--------CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCC
Q 038439           67 LASASTDSTLRLWDVKENLPVRTFRGH--------MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPD  138 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~  138 (179)
                      |++.+.||.|++||+.++.+..++..-        ...+..++|+|+|..++..+.|+.|++|+..+.+....+..... 
T Consensus       153 LAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~-  231 (933)
T KOG1274|consen  153 LAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLS-  231 (933)
T ss_pred             EEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccc-
Confidence            999999999999999998776665431        34566789999988888889999999999999888776665432 


Q ss_pred             CCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          139 MDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       139 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                               ...+..+.|+|+|+|||+++.+|.|.|||..
T Consensus       232 ---------ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  232 ---------SSKFSDLQWSPNGKYIAASTLDGQILVWNVD  262 (933)
T ss_pred             ---------ccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence                     4559999999999999999999999999986

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.6e-21  Score=123.72  Aligned_cols=117  Identities=22%  Similarity=0.273  Sum_probs=98.8

Q ss_pred             eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecC-------CCCCeEEEEEeeCCCEEEEeccCCcEEE
Q 038439           49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRG-------HMNEKNFVGLTVNSEYIACGSESNEVYV  120 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~d~~v~v  120 (179)
                      +.+|++.|.++- +-+ -.+++|+.|.+||+||++-..++..+..       ..+.|..++..|.|+++++|-.|....+
T Consensus       179 ~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~l  257 (350)
T KOG0641|consen  179 LSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCML  257 (350)
T ss_pred             ecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEE
Confidence            667777776653 223 6789999999999999998877776643       2367889999999999999999999999


Q ss_pred             EEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          121 YHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       121 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ||++.+++++.+..            |...|.++.|+|.-.++++++.|..|++-|++
T Consensus       258 ydirg~r~iq~f~p------------hsadir~vrfsp~a~yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  258 YDIRGGRMIQRFHP------------HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             EEeeCCceeeeeCC------------CccceeEEEeCCCceEEEEecccceEEEeecc
Confidence            99999999887653            27889999999999999999999999998875

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.89  E-value=3e-22  Score=128.43  Aligned_cols=128  Identities=13%  Similarity=0.240  Sum_probs=110.1

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe----------CCCcee-eecccCceeEEEEeeC-CeEE
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY----------QSTAPC-VHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      ++|++|++||..+++.++++..+.+|+++.++++| .+++.+          .....+ -..-...|.+...+|+ +.++
T Consensus       162 add~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG-~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fV  240 (334)
T KOG0278|consen  162 ADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDG-RILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFV  240 (334)
T ss_pred             ccCCceEEEEeccCcEEEEEecCCCCcceeeccCC-CEEEEecCceeEEeccccccceeeccCccccccccccCCCceEE
Confidence            47999999999999999999999999999999999 565555          222222 2233456888899999 9999


Q ss_pred             EecCCCcEEEEecCCCcceeee-cCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccc
Q 038439           69 SASTDSTLRLWDVKENLPVRTF-RGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPV  129 (179)
Q Consensus        69 ~~~~d~~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~  129 (179)
                      .|+.|..++.||..+++.+..+ ++|.++|.++.|+|+|...++|++||+|++|....++..
T Consensus       241 aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  241 AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            9999999999999999988886 899999999999999999999999999999998766554

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=5.9e-22  Score=140.21  Aligned_cols=163  Identities=18%  Similarity=0.271  Sum_probs=132.2

Q ss_pred             CccEEEEEcCCceeEEeecC-CCceeEEEEcCCCCeEEEEe-----------CCCcee--eec-ccCceeEEEEeeCCeE
Q 038439            3 YGKVKVWCTRQEASVLNIDM-KANICCVKYNPGSSNYIAKY-----------QSTAPC--VHG-HKKAVSYVKFLSNDEL   67 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~-~~~~i~~~~~~~~~~l   67 (179)
                      ...|++|+..+++.....+. ...|+++.|+++| .++++|           ...+.+  +.+ |...|.+++|. ...+
T Consensus       196 g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~-~~~l  273 (484)
T KOG0305|consen  196 GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN-SSVL  273 (484)
T ss_pred             cceEEEEecCCCceEEeEecCCCceEEEEECCCC-CEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc-CceE
Confidence            34799999998886555543 7889999999999 566666           122222  556 89999999998 4688


Q ss_pred             EEecCCCcEEEEecCCCcceee-ecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccC
Q 038439           68 ASASTDSTLRLWDVKENLPVRT-FRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDA  146 (179)
Q Consensus        68 ~~~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  146 (179)
                      .+|+.++.|..+|++..+.... +.+|...|..+.|++|+.++|+|+.|+.+.|||....+++..+.           +|
T Consensus       274 ssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~-----------~H  342 (484)
T KOG0305|consen  274 SSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT-----------EH  342 (484)
T ss_pred             EEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe-----------cc
Confidence            8999999999999998766554 78899999999999999999999999999999997666655443           22


Q ss_pred             CcceEEEEEEcc-CCCeEEEEe--CCCcEEEEeecC
Q 038439          147 GSYFISAVCWKS-DSPTMLTAN--SQGTIKVLVLAA  179 (179)
Q Consensus       147 ~~~~i~~~~~~~-~~~~l~~~~--~dg~i~iwd~~~  179 (179)
                       ...|..++|+| ....||+|+  .|+.|++||..+
T Consensus       343 -~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~  377 (484)
T KOG0305|consen  343 -TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT  377 (484)
T ss_pred             -ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC
Confidence             88999999999 667788855  499999999753

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=7.2e-23  Score=148.13  Aligned_cols=143  Identities=17%  Similarity=0.271  Sum_probs=119.4

Q ss_pred             ceeEEEEcCCCCeEEEEe------------C--CCcee--eecccCceeEEEEeeC--CeEEEecCCCcEEEEecCCCcc
Q 038439           25 NICCVKYNPGSSNYIAKY------------Q--STAPC--VHGHKKAVSYVKFLSN--DELASASTDSTLRLWDVKENLP   86 (179)
Q Consensus        25 ~v~~~~~~~~~~~~~~~~------------~--~~~~~--~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~   86 (179)
                      .+..++|+.-..++++++            +  ..+.+  +..|+..++++.|++.  .+|++||.||+|++||++..+.
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S  168 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS  168 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence            356778876555666666            1  12222  8899999999999998  8999999999999999999988


Q ss_pred             eeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEE
Q 038439           87 VRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLT  165 (179)
Q Consensus        87 ~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  165 (179)
                      ..++.+....|+.+.|+|. +.+|+++...|.+++||+|..+... .++..          |.++|.++.|+|++.+||+
T Consensus       169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~-~k~~A----------H~GpV~c~nwhPnr~~lAT  237 (839)
T KOG0269|consen  169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCE-KKLTA----------HNGPVLCLNWHPNREWLAT  237 (839)
T ss_pred             cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHH-HHhhc----------ccCceEEEeecCCCceeee
Confidence            8999888889999999995 7789999999999999999765432 22322          3889999999999999999


Q ss_pred             EeCCCcEEEEeec
Q 038439          166 ANSQGTIKVLVLA  178 (179)
Q Consensus       166 ~~~dg~i~iwd~~  178 (179)
                      |+.|+.|+|||+.
T Consensus       238 GGRDK~vkiWd~t  250 (839)
T KOG0269|consen  238 GGRDKMVKIWDMT  250 (839)
T ss_pred             cCCCccEEEEecc
Confidence            9999999999975

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.89  E-value=3.8e-21  Score=139.16  Aligned_cols=164  Identities=18%  Similarity=0.253  Sum_probs=133.1

Q ss_pred             CCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCCCcee------------eecccCceeEEEEeeC-CeEE
Q 038439            2 AYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPC------------VHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      ..+.+++|+..+.+++.++... -+.+..|-|.+.+++...++++..            +++|.+.|++++.+|+ ..++
T Consensus       392 a~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~v  470 (888)
T KOG0306|consen  392 AGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFV  470 (888)
T ss_pred             CCCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceE
Confidence            4689999999999999999876 789999999885444444554322            6789999999999999 8999


Q ss_pred             EecCCCcEEEEecCC-----Cc--ceeeec-----CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCC
Q 038439           69 SASTDSTLRLWDVKE-----NL--PVRTFR-----GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSS  136 (179)
Q Consensus        69 ~~~~d~~v~iwd~~~-----~~--~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~  136 (179)
                      +||.|.+|++||+.-     +.  .+..++     .-...|.++++||||++++++-.|++|+||-+.+.+...++.   
T Consensus       471 T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLY---  547 (888)
T KOG0306|consen  471 TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLY---  547 (888)
T ss_pred             EecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeec---
Confidence            999999999999742     11  111111     124578999999999999999999999999999877654432   


Q ss_pred             CCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       137 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                              +| .-+|.++..+||++.+++|+.|..|++|-+.
T Consensus       548 --------GH-kLPV~smDIS~DSklivTgSADKnVKiWGLd  580 (888)
T KOG0306|consen  548 --------GH-KLPVLSMDISPDSKLIVTGSADKNVKIWGLD  580 (888)
T ss_pred             --------cc-ccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence                    22 8899999999999999999999999999763

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=2e-22  Score=143.51  Aligned_cols=166  Identities=17%  Similarity=0.297  Sum_probs=135.6

Q ss_pred             CCCccEEEEEcCCce------eEEeec-CCCceeEEEEcCCCCeEEEEe----------CCC--cee--eecccCceeEE
Q 038439            1 MAYGKVKVWCTRQEA------SVLNID-MKANICCVKYNPGSSNYIAKY----------QST--APC--VHGHKKAVSYV   59 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~------~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~--~~~--~~~~~~~i~~~   59 (179)
                      |.||.|++|+.....      .+..++ |.+.|+.+....++..++.++          ...  -++  +..|...|.|+
T Consensus        44 GRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcl  123 (735)
T KOG0308|consen   44 GRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCL  123 (735)
T ss_pred             CCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheee
Confidence            679999999976432      244554 778899999988887788777          111  222  78899999999


Q ss_pred             EE-eeC-CeEEEecCCCcEEEEecCCCc--ceee--------ec-CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCC
Q 038439           60 KF-LSN-DELASASTDSTLRLWDVKENL--PVRT--------FR-GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEIS  126 (179)
Q Consensus        60 ~~-~~~-~~l~~~~~d~~v~iwd~~~~~--~~~~--------~~-~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~  126 (179)
                      ++ .++ .++++|+.|+.|.+||+..+.  .+.+        +. ++...|++++.++.|..|++|+..+.+++||.+++
T Consensus       124 a~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~  203 (735)
T KOG0308|consen  124 AYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC  203 (735)
T ss_pred             eecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccc
Confidence            99 566 889999999999999999762  2222        22 56778999999999999999999999999999999


Q ss_pred             ccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          127 KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      +.+..+.  +|          ...|..+..++||..+++++.||+|++|||.
T Consensus       204 ~kimkLr--GH----------TdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg  243 (735)
T KOG0308|consen  204 KKIMKLR--GH----------TDNVRVLLVNDDGTRLLSASSDGTIRLWDLG  243 (735)
T ss_pred             cceeeee--cc----------ccceEEEEEcCCCCeEeecCCCceEEeeecc
Confidence            8876654  22          7789999999999999999999999999985

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.89  E-value=3.4e-22  Score=139.24  Aligned_cols=163  Identities=16%  Similarity=0.307  Sum_probs=126.1

Q ss_pred             CCCccEEEEEcCCce-eEEeec------CCCceeEEEEcCCCCeEEEEe-------------CCCcee---eecccC--c
Q 038439            1 MAYGKVKVWCTRQEA-SVLNID------MKANICCVKYNPGSSNYIAKY-------------QSTAPC---VHGHKK--A   55 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~-~~~~~~------~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~---~~~~~~--~   55 (179)
                      |+||+++|||++..+ .++.+.      ..-++++++|+|+|. ++|+|             ...++.   -.+|..  .
T Consensus       288 s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~  366 (641)
T KOG0772|consen  288 SYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQD  366 (641)
T ss_pred             cCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCc
Confidence            689999999998654 333333      234689999999995 56666             111222   557877  8


Q ss_pred             eeEEEEeeC-CeEEEecCCCcEEEEecCCC-cceeeecCC--CCCeEEEEEeeCCCEEEEecc------CCcEEEEEcCC
Q 038439           56 VSYVKFLSN-DELASASTDSTLRLWDVKEN-LPVRTFRGH--MNEKNFVGLTVNSEYIACGSE------SNEVYVYHKEI  125 (179)
Q Consensus        56 i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~------d~~v~vwd~~~  125 (179)
                      |+|+.|+++ ++|++-+.|+++++||++.. +++....+-  .-+-+.++|+|+.++|++|..      .|.+.+||..+
T Consensus       367 Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t  446 (641)
T KOG0772|consen  367 ITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT  446 (641)
T ss_pred             eeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence            999999999 99999999999999999975 344433322  234567899999999999854      57899999999


Q ss_pred             CccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439          126 SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  176 (179)
                      .+.+..+.+.            ...|..+.|+|.-+.|++|+.||.+++|-
T Consensus       447 ~d~v~ki~i~------------~aSvv~~~WhpkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  447 LDTVYKIDIS------------TASVVRCLWHPKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             eeeEEEecCC------------CceEEEEeecchhhheeeecCCCceEEEE
Confidence            8888776653            55788999999999999999999999974

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.88  E-value=3.8e-22  Score=138.92  Aligned_cols=162  Identities=19%  Similarity=0.296  Sum_probs=134.5

Q ss_pred             CCccEEEEEcCCc---eeEEeec---CCCceeEEEEcCCCCeEEEEeCCC-----------cee---eecccCceeEEEE
Q 038439            2 AYGKVKVWCTRQE---ASVLNID---MKANICCVKYNPGSSNYIAKYQST-----------APC---VHGHKKAVSYVKF   61 (179)
Q Consensus         2 ~d~~i~vwd~~~~---~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~-----------~~~---~~~~~~~i~~~~~   61 (179)
                      -.|.|+|||+...   .++..+.   ...-|.++...|+|+.+++.|...           ..+   +....-....++.
T Consensus       438 GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~  517 (705)
T KOG0639|consen  438 GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI  517 (705)
T ss_pred             CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhc
Confidence            3589999998753   2333343   456799999999998888887210           011   2222334567889


Q ss_pred             eeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCC
Q 038439           62 LSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMD  140 (179)
Q Consensus        62 ~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~  140 (179)
                      +|| ...+++..||.|.|||+.....++.|++|...+.|+..++||..|-+|+.|++|+.||+++++.++...+      
T Consensus       518 spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF------  591 (705)
T KOG0639|consen  518 SPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF------  591 (705)
T ss_pred             CCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhh------
Confidence            999 8899999999999999999999999999999999999999999999999999999999999999888877      


Q ss_pred             CCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439          141 DTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       141 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  176 (179)
                             ...|.++-.+|++.+|++|-.++.+.|-.
T Consensus       592 -------~SQIfSLg~cP~~dWlavGMens~vevlh  620 (705)
T KOG0639|consen  592 -------SSQIFSLGYCPTGDWLAVGMENSNVEVLH  620 (705)
T ss_pred             -------hhhheecccCCCccceeeecccCcEEEEe
Confidence                   77899999999999999999999887754

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=2e-21  Score=138.55  Aligned_cols=166  Identities=16%  Similarity=0.237  Sum_probs=140.9

Q ss_pred             CCCccEEEEEcCCc--eeEEeec-CCCceeEEEE-cCCCCeEEEEe-----------CCC--------cee----ee-cc
Q 038439            1 MAYGKVKVWCTRQE--ASVLNID-MKANICCVKY-NPGSSNYIAKY-----------QST--------APC----VH-GH   52 (179)
Q Consensus         1 ~~d~~i~vwd~~~~--~~~~~~~-~~~~v~~~~~-~~~~~~~~~~~-----------~~~--------~~~----~~-~~   52 (179)
                      |.|-+|++|+...+  -++.++. |++-|.|+++ .++. .++++|           +.+        ..+    +. ++
T Consensus        92 SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~  170 (735)
T KOG0308|consen   92 SSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP  170 (735)
T ss_pred             cCCceEEEeecccCcchhHhhhhcccchheeeeecccCc-eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC
Confidence            57899999999877  4666664 9999999999 5555 666666           211        111    33 78


Q ss_pred             cCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccc
Q 038439           53 KKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTW  131 (179)
Q Consensus        53 ~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~  131 (179)
                      ..+|.+++.++. ..+++|+..+.+++||.++++.+..+++|...|+.+..++||+.+++++.||+|++||+...+++.+
T Consensus       171 k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T  250 (735)
T KOG0308|consen  171 KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLAT  250 (735)
T ss_pred             ccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeee
Confidence            889999999888 7889999999999999999999999999999999999999999999999999999999998888877


Q ss_pred             cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      +...            ...|+++..+|+-..+++|+.||.|..=|+++
T Consensus       251 ~~vH------------~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n  286 (735)
T KOG0308|consen  251 YIVH------------KEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN  286 (735)
T ss_pred             EEec------------cCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence            6542            66799999999999999999999999888764

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=6e-23  Score=147.68  Aligned_cols=166  Identities=17%  Similarity=0.311  Sum_probs=142.9

Q ss_pred             CCCccEEEEEcCCceeEEee-cCCCceeEEEEcCCCCeEEEEeC-----------CCcee--eecccCceeEEEEeeC-C
Q 038439            1 MAYGKVKVWCTRQEASVLNI-DMKANICCVKYNPGSSNYIAKYQ-----------STAPC--VHGHKKAVSYVKFLSN-D   65 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~-----------~~~~~--~~~~~~~i~~~~~~~~-~   65 (179)
                      |+|..+-||.......+..+ .|..+|.++.|++.. .++++|.           ..+.+  +.+|...+.++.|+|- .
T Consensus        47 g~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~  125 (825)
T KOG0267|consen   47 GEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGE  125 (825)
T ss_pred             CCceeeccccccCCchhheeeccCCcceeeecCcch-hhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceE
Confidence            35667778887777666665 489999999999988 6777761           22223  7799999999999999 8


Q ss_pred             eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCccc
Q 038439           66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDED  145 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  145 (179)
                      +++.++.|..+++||++..-+...+++|...+..+.|+|+|+++++|++|..+++||+..++....+..           
T Consensus       126 ~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~-----------  194 (825)
T KOG0267|consen  126 FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS-----------  194 (825)
T ss_pred             EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccc-----------
Confidence            889999999999999998889999999999999999999999999999999999999999998876552           


Q ss_pred             CCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          146 AGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       146 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                       |...+..+.|+|..-++++|+.|+++++||+++
T Consensus       195 -~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet  227 (825)
T KOG0267|consen  195 -HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET  227 (825)
T ss_pred             -ccccccccccCchhhhhccCCCCceeeeeccce
Confidence             177889999999999999999999999999874

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.88  E-value=4.3e-21  Score=137.59  Aligned_cols=159  Identities=19%  Similarity=0.324  Sum_probs=133.8

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe--------CCCcee--eecccCceeEEEEeeCCeEEE
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY--------QSTAPC--VHGHKKAVSYVKFLSNDELAS   69 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~--------~~~~~~--~~~~~~~i~~~~~~~~~~l~~   69 (179)
                      |.|.++++|-..  ++...++ |+..|.+++.-|.+ .++..+        ..++.+  +.+|+..|..+++.++..|++
T Consensus       119 SWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~flS  195 (745)
T KOG0301|consen  119 SWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSHFLS  195 (745)
T ss_pred             ccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCchhhhhccchhheeeeEEecCCCeEe
Confidence            679999999854  4444454 99999999999988 555554        445555  899999999999999989999


Q ss_pred             ecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcc
Q 038439           70 ASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSY  149 (179)
Q Consensus        70 ~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (179)
                      ++.||.|++|++ +++.+..+.+|++-+++++..+++..++++++|+++++|+..  ++.+.+.+.            ..
T Consensus       196 csNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP------------tt  260 (745)
T KOG0301|consen  196 CSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP------------TT  260 (745)
T ss_pred             ecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC------------cc
Confidence            999999999999 688899999999999999988889999999999999999987  555555543            55


Q ss_pred             eEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          150 FISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       150 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .|+++.+-++|. +++|+.||.|+||...
T Consensus       261 siWsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  261 SIWSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             ceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence            799999988888 7789999999999754

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.88  E-value=2.5e-21  Score=131.52  Aligned_cols=163  Identities=18%  Similarity=0.283  Sum_probs=127.1

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-------------------------------------
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-------------------------------------   42 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-------------------------------------   42 (179)
                      ++|+.+++|++...+...++. |.+.|+++.|...... ++.|                                     
T Consensus       238 s~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~  316 (459)
T KOG0288|consen  238 SNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVI  316 (459)
T ss_pred             cCCCceeeeeccchhhhhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEecceeee
Confidence            578888999988888777775 8888888888776543 4444                                     


Q ss_pred             -------------CCCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCC----CCCeEEEEE
Q 038439           43 -------------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGH----MNEKNFVGL  102 (179)
Q Consensus        43 -------------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~----~~~v~~~~~  102 (179)
                                   +...++  ... .+.|+++..+++ ..+++++.|.++.+.|+++.+....+...    .+..+.+.|
T Consensus       317 SgH~DkkvRfwD~Rs~~~~~sv~~-gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvf  395 (459)
T KOG0288|consen  317 SGHFDKKVRFWDIRSADKTRSVPL-GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVF  395 (459)
T ss_pred             ecccccceEEEeccCCceeeEeec-CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEE
Confidence                         111111  112 236888888888 77888899999999999988777776542    234678899


Q ss_pred             eeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEE
Q 038439          103 TVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVL  175 (179)
Q Consensus       103 ~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw  175 (179)
                      +|++.|+++|+.||.|+||++.+++..........          ...|++++|+|.|..|++++.++.+.+|
T Consensus       396 Spd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s----------~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  396 SPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTS----------NAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             CCCCceeeeccCCCcEEEEEccCceEEEEeccCCC----------CcceEEEEEcCCCchhhcccCCcceEec
Confidence            99999999999999999999999998776655322          3379999999999999999999999999

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.87  E-value=4.2e-22  Score=135.21  Aligned_cols=170  Identities=15%  Similarity=0.223  Sum_probs=126.7

Q ss_pred             CCCccEEEEEcCCce--eEEeec-CCCceeEEEEcCCCCeEEEEeCCC----------cee--eecccCceeEEEEeeC-
Q 038439            1 MAYGKVKVWCTRQEA--SVLNID-MKANICCVKYNPGSSNYIAKYQST----------APC--VHGHKKAVSYVKFLSN-   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~----------~~~--~~~~~~~i~~~~~~~~-   64 (179)
                      |.|..|++|++...+  ...++. ..++|++++|.+++..+++.++.+          +..  +.+|+..|+++.|... 
T Consensus       194 g~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~  273 (459)
T KOG0288|consen  194 GSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSH  273 (459)
T ss_pred             chhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccc
Confidence            468899999987665  444454 568899999999998888888222          222  7889988888877665 


Q ss_pred             CeEEEecCCCcEEEEecC---------------------------------------CCcceeeecCCCCCeEEEEEeeC
Q 038439           65 DELASASTDSTLRLWDVK---------------------------------------ENLPVRTFRGHMNEKNFVGLTVN  105 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~---------------------------------------~~~~~~~~~~~~~~v~~~~~~~~  105 (179)
                      ..+++|+.|.+++.||+.                                       +..+...+.. .+.|+++..+++
T Consensus       274 ~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~-gg~vtSl~ls~~  352 (459)
T KOG0288|consen  274 SRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPL-GGRVTSLDLSMD  352 (459)
T ss_pred             cceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeec-CcceeeEeeccC
Confidence            335566666555555554                                       4444444433 347888999999


Q ss_pred             CCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          106 SEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       106 ~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      +..+.+++.|..+.+.|+++.+....+.......        ....+.+.|+|++.|+++|+.||.|+||++.+
T Consensus       353 g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~--------asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~t  418 (459)
T KOG0288|consen  353 GLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKC--------ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFT  418 (459)
T ss_pred             CeEEeeecCCCceeeeecccccEEEEeecccccc--------ccccceeEECCCCceeeeccCCCcEEEEEccC
Confidence            9999999999999999999988776665432210        44588999999999999999999999999753

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.87  E-value=2.9e-21  Score=144.04  Aligned_cols=160  Identities=20%  Similarity=0.349  Sum_probs=124.1

Q ss_pred             CCccEEEEEcCC------------ceeEEee-cCCCceeEEEEcCCCCeEEEEe----------C---------------
Q 038439            2 AYGKVKVWCTRQ------------EASVLNI-DMKANICCVKYNPGSSNYIAKY----------Q---------------   43 (179)
Q Consensus         2 ~d~~i~vwd~~~------------~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~----------~---------------   43 (179)
                      .|+.+.||+.+.            .+.+.+. .|.+.|+|+.|+||| .++|.|          .               
T Consensus        35 ~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG-~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~  113 (942)
T KOG0973|consen   35 LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDG-SYLASGSDDRLVMIWERAEIGSGTVFGSTGGA  113 (942)
T ss_pred             ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCC-CeEeeccCcceEEEeeecccCCcccccccccc
Confidence            478888998642            1122223 488999999999999 455555          0               


Q ss_pred             ----CCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCC
Q 038439           44 ----STAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESN  116 (179)
Q Consensus        44 ----~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~  116 (179)
                          .-+.+  +.+|...|..++|+|+ .++++++.|++|.+|+.++.+.+..+++|.+.|..+.|.|-|+||++-+.|+
T Consensus       114 ~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDr  193 (942)
T KOG0973|consen  114 KNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDR  193 (942)
T ss_pred             cccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCc
Confidence                01122  8899999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC
Q 038439          117 EVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS  168 (179)
Q Consensus       117 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  168 (179)
                      +|++|+..+-.......-  +...    .........+.|+|||.+|++...
T Consensus       194 tikvwrt~dw~i~k~It~--pf~~----~~~~T~f~RlSWSPDG~~las~nA  239 (942)
T KOG0973|consen  194 TLKVWRTSDWGIEKSITK--PFEE----SPLTTFFLRLSWSPDGHHLASPNA  239 (942)
T ss_pred             eEEEEEcccceeeEeecc--chhh----CCCcceeeecccCCCcCeecchhh
Confidence            999999766433322211  1000    001557889999999999998654

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=3.8e-20  Score=126.74  Aligned_cols=168  Identities=14%  Similarity=0.217  Sum_probs=133.2

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeCCCcee--ee-----------cccCceeEEEEeeC--
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQSTAPC--VH-----------GHKKAVSYVKFLSN--   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~-----------~~~~~i~~~~~~~~--   64 (179)
                      |.|.+|++||+.++++..++. |...|.+++|+|..+.++..|...+.+  ..           .-.+.|-.+.|.|.  
T Consensus       263 saD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se  342 (463)
T KOG0270|consen  263 SADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE  342 (463)
T ss_pred             CCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc
Confidence            679999999999999999997 788999999999988888888332222  11           23467888999998  


Q ss_pred             CeEEEecCCCcEEEEecCC-CcceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCC
Q 038439           65 DELASASTDSTLRLWDVKE-NLPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDT  142 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~  142 (179)
                      ..++++..||+|+-+|+|. ++++.+++.|..+|.++++++. ..++++++.|+.|++|++....+.........     
T Consensus       343 ~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~-----  417 (463)
T KOG0270|consen  343 NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFK-----  417 (463)
T ss_pred             eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccccc-----
Confidence            7788889999999999997 4899999999999999999986 45688999999999999986555333221100     


Q ss_pred             cccCCcceEEEEEEccCCC-eEEEEeCCCcEEEEeec
Q 038439          143 DEDAGSYFISAVCWKSDSP-TMLTANSQGTIKVLVLA  178 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~  178 (179)
                           -+...|.++.|+-. .++.|+..+.++|||+.
T Consensus       418 -----~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~  449 (463)
T KOG0270|consen  418 -----LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF  449 (463)
T ss_pred             -----ccceeecccCCCcceEEEecCccceEEEeecc
Confidence                 23466777777654 56778888889999974

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=2.9e-22  Score=144.25  Aligned_cols=157  Identities=18%  Similarity=0.308  Sum_probs=135.6

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-C
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-D   65 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~   65 (179)
                      +.||+|++||++..+.++++- |...+.++.|+|-+ .+++.|           +...+.  +.+|...+.+++|+|+ .
T Consensus        89 sasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr  167 (825)
T KOG0267|consen   89 SASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGR  167 (825)
T ss_pred             ccCCceeeeehhhhhhhhhhhccccCcceeeeccce-EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCc
Confidence            468999999999999888774 88999999999999 566666           222333  7789999999999999 7


Q ss_pred             eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCccc
Q 038439           66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDED  145 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  145 (179)
                      +++.++.|..++|||+..++.+..|+.|...+..+.|+|..-.+++|+.|+.+++||+++.+.+......          
T Consensus       168 ~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~----------  237 (825)
T KOG0267|consen  168 WVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE----------  237 (825)
T ss_pred             eeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc----------
Confidence            9999999999999999999999999999999999999999988999999999999999988777654432          


Q ss_pred             CCcceEEEEEEccCCCeEEEEeCCC
Q 038439          146 AGSYFISAVCWKSDSPTMLTANSQG  170 (179)
Q Consensus       146 ~~~~~i~~~~~~~~~~~l~~~~~dg  170 (179)
                        ...|.++.|+|++..+++|....
T Consensus       238 --~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  238 --TDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             --cCCceeeeecCCceeeecCchhh
Confidence              55799999999999998887653

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=1e-20  Score=128.80  Aligned_cols=145  Identities=14%  Similarity=0.176  Sum_probs=120.1

Q ss_pred             cCCCceeEEEEcCCCCeEEEEe------------CCCc--ee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCC
Q 038439           21 DMKANICCVKYNPGSSNYIAKY------------QSTA--PC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKE   83 (179)
Q Consensus        21 ~~~~~v~~~~~~~~~~~~~~~~------------~~~~--~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~   83 (179)
                      .|..+|..+.||++| +++|++            ...+  ..  +.+|..+|..+.|+|| +++++++.+..+.+||+.+
T Consensus       222 ~htdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~t  300 (519)
T KOG0293|consen  222 DHTDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDT  300 (519)
T ss_pred             hCCCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCc
Confidence            388999999999999 555555            1111  12  7789999999999999 9999999999999999999


Q ss_pred             CcceeeecCC-CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCe
Q 038439           84 NLPVRTFRGH-MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPT  162 (179)
Q Consensus        84 ~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  162 (179)
                      +...+.+... .-.+.+.+|.|||..+++|+.|+.+..||+.... ...++...           ...|.+++..+||++
T Consensus       301 gd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr-----------~~~v~dlait~Dgk~  368 (519)
T KOG0293|consen  301 GDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVR-----------DPKVHDLAITYDGKY  368 (519)
T ss_pred             chhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccc-----------cceeEEEEEcCCCcE
Confidence            9988877543 4678899999999999999999999999997543 33333211           346999999999999


Q ss_pred             EEEEeCCCcEEEEeec
Q 038439          163 MLTANSQGTIKVLVLA  178 (179)
Q Consensus       163 l~~~~~dg~i~iwd~~  178 (179)
                      +++.+.|..|++|+.+
T Consensus       369 vl~v~~d~~i~l~~~e  384 (519)
T KOG0293|consen  369 VLLVTVDKKIRLYNRE  384 (519)
T ss_pred             EEEEecccceeeechh
Confidence            9999999999999865

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=4.4e-20  Score=121.77  Aligned_cols=176  Identities=15%  Similarity=0.184  Sum_probs=120.2

Q ss_pred             CCCccEEEEEcCCceeEEee-cCCCceeEEEEcCCCC--eEEEEeCC----------Ccee--eecccCceeEEEEeeC-
Q 038439            1 MAYGKVKVWCTRQEASVLNI-DMKANICCVKYNPGSS--NYIAKYQS----------TAPC--VHGHKKAVSYVKFLSN-   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~--~~~~~~~~----------~~~~--~~~~~~~i~~~~~~~~-   64 (179)
                      |.|.+|+|||..+...+..+ .|.+.|+++.|.+...  .++++...          -..+  +++|.+.|+.++.+|. 
T Consensus        60 ssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~  139 (362)
T KOG0294|consen   60 SSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG  139 (362)
T ss_pred             CCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCC
Confidence            67999999999988877766 5889999999998764  67777622          2334  8899999999999999 


Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccC---------
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFS---------  135 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~---------  135 (179)
                      .+-++.+.|+.+++||+-.++.-..+.- ......+.|+|.|.+|+.++.+ .|-+|.+.+..........         
T Consensus       140 KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l  217 (362)
T KOG0294|consen  140 KLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFL  217 (362)
T ss_pred             ceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeec
Confidence            7778899999999999988754333221 1222346666766666555543 3555555432211111100         


Q ss_pred             -------------------CCCCCCCcccCCcceEEEEEE--ccCCCeEEEEeCCCcEEEEeec
Q 038439          136 -------------------SPDMDDTDEDAGSYFISAVCW--KSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       136 -------------------~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                                         ...........|..+|-.+.+  .|++.+|++++.||.|+|||++
T Consensus       218 ~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~  281 (362)
T KOG0294|consen  218 DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID  281 (362)
T ss_pred             CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence                               001111122334778888874  4678899999999999999986

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=5.3e-21  Score=122.23  Aligned_cols=167  Identities=17%  Similarity=0.231  Sum_probs=127.6

Q ss_pred             CCCccEEEEEcCCceeEEeec---CCCceeEEEEcCCCC-eEEEEe------------CCC----ceeeecccCceeEEE
Q 038439            1 MAYGKVKVWCTRQEASVLNID---MKANICCVKYNPGSS-NYIAKY------------QST----APCVHGHKKAVSYVK   60 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~-~~~~~~------------~~~----~~~~~~~~~~i~~~~   60 (179)
                      +.||.|.||.-.+++-.+...   |...|++++|.|.+- .+++++            ..+    +.+..+|.-.+++++
T Consensus        77 sYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs  156 (299)
T KOG1332|consen   77 SYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS  156 (299)
T ss_pred             ecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee
Confidence            579999999988886544443   788999999999753 345554            111    111678999999999


Q ss_pred             EeeC--C-------------eEEEecCCCcEEEEecCCCc--ceeeecCCCCCeEEEEEeeC----CCEEEEeccCCcEE
Q 038439           61 FLSN--D-------------ELASASTDSTLRLWDVKENL--PVRTFRGHMNEKNFVGLTVN----SEYIACGSESNEVY  119 (179)
Q Consensus        61 ~~~~--~-------------~l~~~~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~d~~v~  119 (179)
                      |.|.  .             .|++|+.|..|+||+...++  .-.++.+|...|+.++|.|.    ..+|++++.||.|.
T Consensus       157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~vi  236 (299)
T KOG1332|consen  157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVI  236 (299)
T ss_pred             ecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEE
Confidence            9986  2             49999999999999998753  33558899999999999996    34699999999999


Q ss_pred             EEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439          120 VYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       120 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  176 (179)
                      ||-.+.........+....         ...++.++|++.|+.|++++.|+.+.+|.
T Consensus       237 Iwt~~~e~e~wk~tll~~f---------~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  237 IWTKDEEYEPWKKTLLEEF---------PDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             EEEecCccCcccccccccC---------CcceEEEEEeccccEEEEecCCcEEEEEE
Confidence            9987732222111111110         55799999999999999999999999995

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=1.4e-20  Score=120.25  Aligned_cols=166  Identities=15%  Similarity=0.187  Sum_probs=128.9

Q ss_pred             CCCccEEEEEcCCce---eEEeec-CCCceeEEEEcC--CCCeEEEEe-CCCcee--------------eecccCceeEE
Q 038439            1 MAYGKVKVWCTRQEA---SVLNID-MKANICCVKYNP--GSSNYIAKY-QSTAPC--------------VHGHKKAVSYV   59 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~---~~~~~~-~~~~v~~~~~~~--~~~~~~~~~-~~~~~~--------------~~~~~~~i~~~   59 (179)
                      |.|++|+|+.++...   ++.++. |.+||..++|..  .| .+++.+ -.++.+              ...|...|+++
T Consensus        30 sSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV  108 (299)
T KOG1332|consen   30 SSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFG-TILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSV  108 (299)
T ss_pred             cCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccC-cEeeEeecCceEEEEecCCCchhhhhhhhhhcccceee
Confidence            579999999987643   455554 899999999964  45 566665 222222              56789999999


Q ss_pred             EEeeC---CeEEEecCCCcEEEEecCCC---cceeeecCCCCCeEEEEEeeC---C-----------CEEEEeccCCcEE
Q 038439           60 KFLSN---DELASASTDSTLRLWDVKEN---LPVRTFRGHMNEKNFVGLTVN---S-----------EYIACGSESNEVY  119 (179)
Q Consensus        60 ~~~~~---~~l~~~~~d~~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~---~-----------~~~~~~~~d~~v~  119 (179)
                      +|.|.   -.|++++.||.|.|.+++..   ........|.-.|++++|.|-   |           +.|++|+.|+.|+
T Consensus       109 ~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~Vk  188 (299)
T KOG1332|consen  109 AWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVK  188 (299)
T ss_pred             cccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCcccee
Confidence            99998   46788999999999998764   222345678889999999985   4           5699999999999


Q ss_pred             EEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCC----CeEEEEeCCCcEEEEee
Q 038439          120 VYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDS----PTMLTANSQGTIKVLVL  177 (179)
Q Consensus       120 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~iwd~  177 (179)
                      ||+..+++-+....+..|          ...|+.++|.|.-    .+|++++.||++.||-.
T Consensus       189 iW~~~~~~w~~e~~l~~H----------~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~  240 (299)
T KOG1332|consen  189 IWKFDSDSWKLERTLEGH----------KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK  240 (299)
T ss_pred             eeecCCcchhhhhhhhhc----------chhhhhhhhccccCCCceeeEEecCCCcEEEEEe
Confidence            999998754444334333          8899999999954    57999999999999964

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=4.8e-20  Score=122.08  Aligned_cols=167  Identities=14%  Similarity=0.204  Sum_probs=125.8

Q ss_pred             CCCccEEEEEcCCceeE-----EeecCCCceeEEEEcCCCCeEEEEeCCCcee-------------------------ee
Q 038439            1 MAYGKVKVWCTRQEASV-----LNIDMKANICCVKYNPGSSNYIAKYQSTAPC-------------------------VH   50 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------------------------~~   50 (179)
                      +.|++|+||+++..+..     +..-.-+..+.++|+||...+++....+..+                         -+
T Consensus       105 ~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~  184 (420)
T KOG2096|consen  105 SGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFER  184 (420)
T ss_pred             eCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccch
Confidence            47999999999874321     1111224678899999987666655111111                         22


Q ss_pred             cccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCc--
Q 038439           51 GHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK--  127 (179)
Q Consensus        51 ~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~--  127 (179)
                      .|...|..+-...+ .++++++.|..|.+|+++ |+.+..+.......+..+.+|+|+++++++-..-|++|.+--.+  
T Consensus       185 kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG  263 (420)
T KOG2096|consen  185 KHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDG  263 (420)
T ss_pred             hcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCc
Confidence            34555666666666 889999999999999999 88899998877788889999999999999999999999864321  


Q ss_pred             ----cccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          128 ----PVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       128 ----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                          ....+.+..|          ...|..++|+++...+++.+.||+++|||+.
T Consensus       264 ~fqev~rvf~LkGH----------~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  264 TFQEVKRVFSLKGH----------QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             chhhhhhhheeccc----------hhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence                2223334333          8899999999999999999999999999964

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.86  E-value=1.6e-19  Score=131.99  Aligned_cols=125  Identities=10%  Similarity=0.092  Sum_probs=105.1

Q ss_pred             CceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeee---cCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccc
Q 038439           54 KAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTF---RGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPV  129 (179)
Q Consensus        54 ~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~  129 (179)
                      ..+++++.++. ++.+.|+..|.|-+|++++|-....+   ..|.++|+.++...-++.+++++.+|.+++||......+
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~  528 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK  528 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence            45778888888 88889999999999999999887787   478999999999888899999999999999999887655


Q ss_pred             cccccCCC------------------------------CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          130 TWHRFSSP------------------------------DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       130 ~~~~~~~~------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      ..+.+...                              ...+.+.+| +..|++++|||||++|++++.|++|++||+.+
T Consensus       529 ~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh-~nritd~~FS~DgrWlisasmD~tIr~wDlpt  607 (910)
T KOG1539|consen  529 KSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH-GNRITDMTFSPDGRWLISASMDSTIRTWDLPT  607 (910)
T ss_pred             eeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc-ccceeeeEeCCCCcEEEEeecCCcEEEEeccC
Confidence            55444332                              133445555 88999999999999999999999999999864

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.86  E-value=2.7e-19  Score=123.26  Aligned_cols=165  Identities=15%  Similarity=0.140  Sum_probs=119.0

Q ss_pred             CCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCCCcee--ee----------cccCceeEEEEeeC-CeEE
Q 038439            2 AYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPC--VH----------GHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~----------~~~~~i~~~~~~~~-~~l~   68 (179)
                      .|+.|++||+.+.+.+..+.....+.+++|+|++..++++......+  +.          ........+.|+|+ ..++
T Consensus        93 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  172 (300)
T TIGR03866        93 DDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELW  172 (300)
T ss_pred             CCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEE
Confidence            57899999999988888887666789999999996665554221111  11          11234567889999 6664


Q ss_pred             -EecCCCcEEEEecCCCcceeeecCCC-------CCeEEEEEeeCCCEEEE-eccCCcEEEEEcCCCccccccccCCCCC
Q 038439           69 -SASTDSTLRLWDVKENLPVRTFRGHM-------NEKNFVGLTVNSEYIAC-GSESNEVYVYHKEISKPVTWHRFSSPDM  139 (179)
Q Consensus        69 -~~~~d~~v~iwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~-~~~d~~v~vwd~~~~~~~~~~~~~~~~~  139 (179)
                       ++..++.|++||+++++.+..+..+.       .....++|+|+++++++ ...++.+.+||+++++.......     
T Consensus       173 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----  247 (300)
T TIGR03866       173 VSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV-----  247 (300)
T ss_pred             EEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe-----
Confidence             44568999999999887766554221       12346889999998554 45567899999988776544322     


Q ss_pred             CCCcccCCcceEEEEEEccCCCeEEEEe-CCCcEEEEeecC
Q 038439          140 DDTDEDAGSYFISAVCWKSDSPTMLTAN-SQGTIKVLVLAA  179 (179)
Q Consensus       140 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~  179 (179)
                              ...+.+++|+|++++|+++. .+|.|.+||+++
T Consensus       248 --------~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~  280 (300)
T TIGR03866       248 --------GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA  280 (300)
T ss_pred             --------CCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence                    34688999999999998864 589999999864

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.86  E-value=6.3e-20  Score=126.16  Aligned_cols=177  Identities=18%  Similarity=0.310  Sum_probs=138.7

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeCC----------Ccee--eecccCceeEEEEeeC-Ce
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQS----------TAPC--VHGHKKAVSYVKFLSN-DE   66 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~----------~~~~--~~~~~~~i~~~~~~~~-~~   66 (179)
                      +-|..|.||+..+.+.++.+. |.+.|.+++|-.....+++++..          ...+  +.+|...|..|....- ..
T Consensus       221 g~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~  300 (479)
T KOG0299|consen  221 GRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERC  300 (479)
T ss_pred             CCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccce
Confidence            357789999999999999975 88999999998777678887711          1122  7789999999987766 55


Q ss_pred             EEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccC
Q 038439           67 LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDA  146 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  146 (179)
                      +-.|+.|+++++|++... ....+.++.+.+-|++|-. ...|++|+.+|.|.+|++...+++.......+.......-.
T Consensus       301 vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~  378 (479)
T KOG0299|consen  301 VTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVN  378 (479)
T ss_pred             EEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccc
Confidence            555669999999999543 3446677888899999865 45689999999999999999999887765544332221122


Q ss_pred             CcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          147 GSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       147 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      +...|++++..|..+++++|+.+|.|++|-+++
T Consensus       379 ~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~  411 (479)
T KOG0299|consen  379 GNFWITSLAVIPGSDLLASGSWSGCVRLWKIED  411 (479)
T ss_pred             cccceeeeEecccCceEEecCCCCceEEEEecC
Confidence            245899999999999999999999999998753

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.86  E-value=5.3e-20  Score=120.76  Aligned_cols=142  Identities=18%  Similarity=0.228  Sum_probs=119.5

Q ss_pred             CCCceeEEEEcCCCCeEEEEe------------CCCcee---eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCc
Q 038439           22 MKANICCVKYNPGSSNYIAKY------------QSTAPC---VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENL   85 (179)
Q Consensus        22 ~~~~v~~~~~~~~~~~~~~~~------------~~~~~~---~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~   85 (179)
                      ..+.|.+++|||....++++|            +.+..+   ...|.++|.+++|+.+ ..+++|+.|+.+++||+.++ 
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-  104 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-  104 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-
Confidence            456799999999766777676            333333   6679999999999999 99999999999999999998 


Q ss_pred             ceeeecCCCCCeEEEEEeeCCC--EEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeE
Q 038439           86 PVRTFRGHMNEKNFVGLTVNSE--YIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTM  163 (179)
Q Consensus        86 ~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  163 (179)
                      ++.++..|..+|..+.|-+...  .|++|+.|.+|+.||.|...++..+.+             ...++++..  -..++
T Consensus       105 Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-------------PeRvYa~Dv--~~pm~  169 (347)
T KOG0647|consen  105 QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-------------PERVYAADV--LYPMA  169 (347)
T ss_pred             CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-------------cceeeehhc--cCcee
Confidence            5678888999999999987655  699999999999999999999888877             556776655  35678


Q ss_pred             EEEeCCCcEEEEeecC
Q 038439          164 LTANSQGTIKVLVLAA  179 (179)
Q Consensus       164 ~~~~~dg~i~iwd~~~  179 (179)
                      +++..+..|.+|+|++
T Consensus       170 vVata~r~i~vynL~n  185 (347)
T KOG0647|consen  170 VVATAERHIAVYNLEN  185 (347)
T ss_pred             EEEecCCcEEEEEcCC
Confidence            8899999999999963

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.86  E-value=4.8e-20  Score=120.97  Aligned_cols=178  Identities=15%  Similarity=0.148  Sum_probs=133.0

Q ss_pred             CCCccEEEEEcCCce----------eEEee------cCCCceeEEEEcCCCCeEEEEe-----------CCCcee-eecc
Q 038439            1 MAYGKVKVWCTRQEA----------SVLNI------DMKANICCVKYNPGSSNYIAKY-----------QSTAPC-VHGH   52 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~----------~~~~~------~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~   52 (179)
                      +.||.|.|||++...          .+..+      .|+..|.++.|-|-..-++.++           ++-+.. ....
T Consensus        63 gadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m  142 (397)
T KOG4283|consen   63 GADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM  142 (397)
T ss_pred             CCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeec
Confidence            579999999997532          11111      2667899999999776777777           222222 2334


Q ss_pred             cCceeEEEEeeC----CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCE-EEEeccCCcEEEEEcCCC-
Q 038439           53 KKAVSYVKFLSN----DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEY-IACGSESNEVYVYHKEIS-  126 (179)
Q Consensus        53 ~~~i~~~~~~~~----~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~d~~v~vwd~~~~-  126 (179)
                      ++.|.+-+++|-    -++++|..+-.|++.|+.+|..-+++.+|...|.++.|+|..++ |++|+.||.|++||++.. 
T Consensus       143 e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras  222 (397)
T KOG4283|consen  143 EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS  222 (397)
T ss_pred             CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccc
Confidence            567777788886    46778888999999999999999999999999999999999887 689999999999999864 


Q ss_pred             ccccccccCC--CCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          127 KPVTWHRFSS--PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       127 ~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .+...+....  ..........|.+.++.++|..++.++++.+.|.++++|+..
T Consensus       223 gcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~  276 (397)
T KOG4283|consen  223 GCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNME  276 (397)
T ss_pred             ceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecc
Confidence            2222211110  111111233448899999999999999999999999999975

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.86  E-value=3e-20  Score=135.74  Aligned_cols=162  Identities=12%  Similarity=0.117  Sum_probs=139.4

Q ss_pred             CCccEEEEEcCCceeEEee----cCCCceeEEEEcCCCCeEEEEeCCCcee-----------eecccCceeEEEEeeC-C
Q 038439            2 AYGKVKVWCTRQEASVLNI----DMKANICCVKYNPGSSNYIAKYQSTAPC-----------VHGHKKAVSYVKFLSN-D   65 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~i~~~~~~~~-~   65 (179)
                      ..|+|.+|+.++|-....+    .|+++|+.++...-++.+++++..|-..           --.-...+.++.++.. .
T Consensus       468 S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~  547 (910)
T KOG1539|consen  468 SKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD  547 (910)
T ss_pred             cCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhh
Confidence            4689999999999988888    4899999999988876677776222221           1112356778888888 8


Q ss_pred             eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCccc
Q 038439           66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDED  145 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  145 (179)
                      .++.+..|-.|+++|..+.+.++.+.+|...++.++|||||+++++++.|++|++||+.++..+..+..           
T Consensus       548 l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v-----------  616 (910)
T KOG1539|consen  548 LLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV-----------  616 (910)
T ss_pred             hhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec-----------
Confidence            899999999999999999999999999999999999999999999999999999999999999888776           


Q ss_pred             CCcceEEEEEEccCCCeEEEEeCC-CcEEEEe
Q 038439          146 AGSYFISAVCWKSDSPTMLTANSQ-GTIKVLV  176 (179)
Q Consensus       146 ~~~~~i~~~~~~~~~~~l~~~~~d-g~i~iwd  176 (179)
                        ..++.++.|+|+|.+||+...| .-|++|-
T Consensus       617 --d~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  617 --DSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             --CCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence              6678999999999999999998 6799994

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.85  E-value=2.9e-20  Score=133.40  Aligned_cols=160  Identities=15%  Similarity=0.246  Sum_probs=136.2

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe--------CCCcee--eecccCceeEEEEeeCCeEEE
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY--------QSTAPC--VHGHKKAVSYVKFLSNDELAS   69 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~--------~~~~~~--~~~~~~~i~~~~~~~~~~l~~   69 (179)
                      +.|.+|.+|...+..++..+. |+..|.++....++ .++..+        ..+++.  +.+|+..|+++...|.+.++|
T Consensus        78 ~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~-~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~~~vT  156 (745)
T KOG0301|consen   78 GMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDG-TLISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPENTYVT  156 (745)
T ss_pred             cccceEEEEecCCCCchhhhhccccceeeeecCCcC-ceEecccccceEEecchhhhcccCCcchheeeeeecCCCcEEe
Confidence            468999999999999998885 99999999988887 344444        444444  899999999999999999999


Q ss_pred             ecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcc
Q 038439           70 ASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSY  149 (179)
Q Consensus        70 ~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (179)
                      ||.|++|++|.-  ++.+++|.+|...|+.+++-+++ .|++++.||.|+.|++ +++.+..+.           + |..
T Consensus       157 gsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~-----------g-htn  220 (745)
T KOG0301|consen  157 GSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMH-----------G-HTN  220 (745)
T ss_pred             ccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeee-----------c-cce
Confidence            999999999985  67889999999999999998875 4788999999999999 566664432           1 277


Q ss_pred             eEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          150 FISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       150 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      .+++++...++..+++++.|++++||+.
T Consensus       221 ~vYsis~~~~~~~Ivs~gEDrtlriW~~  248 (745)
T KOG0301|consen  221 FVYSISMALSDGLIVSTGEDRTLRIWKK  248 (745)
T ss_pred             EEEEEEecCCCCeEEEecCCceEEEeec
Confidence            8999998888999999999999999985

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.85  E-value=3.1e-20  Score=127.68  Aligned_cols=146  Identities=18%  Similarity=0.206  Sum_probs=114.3

Q ss_pred             CCCceeEEEEcCCCC-eEEEEe---------CC-------Ccee-eecccCceeEEEEeeC--CeEEEecCCCcEEEEec
Q 038439           22 MKANICCVKYNPGSS-NYIAKY---------QS-------TAPC-VHGHKKAVSYVKFLSN--DELASASTDSTLRLWDV   81 (179)
Q Consensus        22 ~~~~v~~~~~~~~~~-~~~~~~---------~~-------~~~~-~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~   81 (179)
                      +.++|++++|+|... .++++|         +-       ...+ +..|..+|.++.|+|.  ..+++.|.||+|+.-|+
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~  264 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF  264 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence            678999999999887 788888         11       1111 7789999999999998  89999999999998887


Q ss_pred             CCCc---------------------------------------------ceeeecCCCCCeEEEEEeeC-CCEEEEeccC
Q 038439           82 KENL---------------------------------------------PVRTFRGHMNEKNFVGLTVN-SEYIACGSES  115 (179)
Q Consensus        82 ~~~~---------------------------------------------~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d  115 (179)
                      +...                                             ....+..|...|..++++|. ..++++++.|
T Consensus       265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D  344 (498)
T KOG4328|consen  265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLD  344 (498)
T ss_pred             cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccC
Confidence            6430                                             01122335668999999996 5568999999


Q ss_pred             CcEEEEEcCCCccccc--cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          116 NEVYVYHKEISKPVTW--HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       116 ~~v~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      ++++|||++.-.....  +..          ..|...|.+..|+|++-.|++.+.|.+|+|||.
T Consensus       345 ~T~kIWD~R~l~~K~sp~lst----------~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds  398 (498)
T KOG4328|consen  345 QTAKIWDLRQLRGKASPFLST----------LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS  398 (498)
T ss_pred             cceeeeehhhhcCCCCcceec----------ccccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence            9999999997544332  222          123789999999998888999999999999996

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.85  E-value=8.5e-19  Score=117.86  Aligned_cols=163  Identities=17%  Similarity=0.197  Sum_probs=132.8

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe---------CCCcee-----eecccCceeEEEEeeC-CeEE
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY---------QSTAPC-----VHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------~~~~~~-----~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      +.+++.+++++..+..+....+|.++.++.+  +++++-         +..+.+     ...+...+.++..++. .+++
T Consensus        68 r~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~--RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylA  145 (391)
T KOG2110|consen   68 RKLKVVHFKKKTTICEIFFPTSILAVRMNRK--RLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLA  145 (391)
T ss_pred             ceEEEEEcccCceEEEEecCCceEEEEEccc--eEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEE
Confidence            4688889888888888888999999999986  566654         334444     2234445555555554 4666


Q ss_pred             Ee--cCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCc-EEEEEcCCCccccccccCCCCCCCCccc
Q 038439           69 SA--STDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNE-VYVYHKEISKPVTWHRFSSPDMDDTDED  145 (179)
Q Consensus        69 ~~--~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~  145 (179)
                      .-  ...|.|.+||..+-+++..+..|.+.+.+++|+++|.++|++++.|+ |+|+.+.+++.+.+++....        
T Consensus       146 yp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--------  217 (391)
T KOG2110|consen  146 YPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--------  217 (391)
T ss_pred             ecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--------
Confidence            43  24689999999999999999999999999999999999999999987 68999999999988876433        


Q ss_pred             CCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          146 AGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       146 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                        ...|.+++|+|++++|++.+..++|+||.+.
T Consensus       218 --~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  218 --PVSIYSLSFSPDSQFLAASSNTETVHIFKLE  248 (391)
T ss_pred             --eeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence              5679999999999999999999999999875

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.85  E-value=3.1e-20  Score=138.60  Aligned_cols=145  Identities=19%  Similarity=0.282  Sum_probs=121.6

Q ss_pred             CCCceeEEEEcCCCCeEEEEe------------------------CCCcee--eecccCceeEEEEeeC-CeEEEecCCC
Q 038439           22 MKANICCVKYNPGSSNYIAKY------------------------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDS   74 (179)
Q Consensus        22 ~~~~v~~~~~~~~~~~~~~~~------------------------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~   74 (179)
                      ++..|.+++.+|++..+.+.|                        .-.+.+  +..|.+.|+|+.|+|| .+|++||+|+
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~   91 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR   91 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence            445699999999995544444                        012222  6789999999999999 9999999999


Q ss_pred             cEEEEecCC------------------CcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCC
Q 038439           75 TLRLWDVKE------------------NLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSS  136 (179)
Q Consensus        75 ~v~iwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~  136 (179)
                      .|.||....                  .+.+..+.+|.+.|..++|+|++.++++++.|++|.+|+.++.+.+..+.   
T Consensus        92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~---  168 (942)
T KOG0973|consen   92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR---  168 (942)
T ss_pred             eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee---
Confidence            999999772                  13566788999999999999999999999999999999999996665543   


Q ss_pred             CCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       137 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                              +| ...|-.+.|.|-|++|++-+.|++|+||.+.
T Consensus       169 --------~H-~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~  201 (942)
T KOG0973|consen  169 --------GH-QSLVKGVSWDPIGKYFASQSDDRTLKVWRTS  201 (942)
T ss_pred             --------cc-cccccceEECCccCeeeeecCCceEEEEEcc
Confidence                    22 7789999999999999999999999999853

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.85  E-value=8e-20  Score=121.16  Aligned_cols=169  Identities=14%  Similarity=0.259  Sum_probs=128.7

Q ss_pred             CCCccEEEEEcCCceeEEeec---CCC---ceeEEEEcCCCCeEEEEe----------CCCcee---------eecccCc
Q 038439            1 MAYGKVKVWCTRQEASVLNID---MKA---NICCVKYNPGSSNYIAKY----------QSTAPC---------VHGHKKA   55 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~---~~~---~v~~~~~~~~~~~~~~~~----------~~~~~~---------~~~~~~~   55 (179)
                      +.|.-|++||.-+++....+.   |.+   ...+++|+|||.++++.-          +.++..         -.+..+-
T Consensus       130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi  209 (406)
T KOG2919|consen  130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI  209 (406)
T ss_pred             cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence            457889999999999887764   444   357999999997666654          222211         1123567


Q ss_pred             eeEEEEeeC--CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc-CCcEEEEEcCCCc-cccc
Q 038439           56 VSYVKFLSN--DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE-SNEVYVYHKEISK-PVTW  131 (179)
Q Consensus        56 i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~~v~vwd~~~~~-~~~~  131 (179)
                      |.+++|+|.  ..++.++....+-||.-....++..+.+|.+.|+.+.|.++|+.|++|.. |..|..||+|..+ ++..
T Consensus       210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~  289 (406)
T KOG2919|consen  210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA  289 (406)
T ss_pred             eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh
Confidence            889999998  68999999999999988888999999999999999999999999999876 7789999999754 3333


Q ss_pred             cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                        +..+..     .. ..+| -....|++++|++|+.||.|++||+.
T Consensus       290 --L~rhv~-----~T-NQRI-~FDld~~~~~LasG~tdG~V~vwdlk  327 (406)
T KOG2919|consen  290 --LERHVG-----DT-NQRI-LFDLDPKGEILASGDTDGSVRVWDLK  327 (406)
T ss_pred             --hhhhcc-----Cc-cceE-EEecCCCCceeeccCCCccEEEEecC
Confidence              322210     00 1122 24457899999999999999999985

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=7.4e-19  Score=111.77  Aligned_cols=123  Identities=14%  Similarity=0.185  Sum_probs=87.1

Q ss_pred             ecccCceeEEEEeeC-CeEEEecCCCcEEEEecC----------------------------------------------
Q 038439           50 HGHKKAVSYVKFLSN-DELASASTDSTLRLWDVK----------------------------------------------   82 (179)
Q Consensus        50 ~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~----------------------------------------------   82 (179)
                      +.|.+.|.|.+|+|+ .++++|+.|++|++.-+.                                              
T Consensus        86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i  165 (350)
T KOG0641|consen   86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI  165 (350)
T ss_pred             cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence            345666777777777 667777777766654332                                              


Q ss_pred             ------CCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEE
Q 038439           83 ------ENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCW  156 (179)
Q Consensus        83 ------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  156 (179)
                            .++..+.+.+|.+-|..+ ++-+|-.|++|+.|.+|++||++-...+.......+..     +-.+..|..++.
T Consensus       166 y~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~-----glessavaav~v  239 (350)
T KOG0641|consen  166 YITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDG-----GLESSAVAAVAV  239 (350)
T ss_pred             EEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCC-----CcccceeEEEEE
Confidence                  223444455566555443 34467789999999999999999887776654433321     111578999999


Q ss_pred             ccCCCeEEEEeCCCcEEEEeec
Q 038439          157 KSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       157 ~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .|.|++|++|-.|..+.+||++
T Consensus       240 dpsgrll~sg~~dssc~lydir  261 (350)
T KOG0641|consen  240 DPSGRLLASGHADSSCMLYDIR  261 (350)
T ss_pred             CCCcceeeeccCCCceEEEEee
Confidence            9999999999999999999986

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.85  E-value=8.7e-19  Score=120.71  Aligned_cols=164  Identities=9%  Similarity=0.015  Sum_probs=120.8

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-Ce
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-DE   66 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~~   66 (179)
                      +.|+.|++||+.+++.+..+.....+.+++|+|++..+++++           ..++.+  +..+. .+..+.|+|+ +.
T Consensus         8 ~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~   86 (300)
T TIGR03866         8 EKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKI   86 (300)
T ss_pred             cCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCE
Confidence            468999999999999888888666688999999997766655           222222  22232 3567889999 65


Q ss_pred             EE-EecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCC-cEEEEEcCCCccccccccCCCCCCCCcc
Q 038439           67 LA-SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESN-EVYVYHKEISKPVTWHRFSSPDMDDTDE  144 (179)
Q Consensus        67 l~-~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~-~v~vwd~~~~~~~~~~~~~~~~~~~~~~  144 (179)
                      ++ +++.++.+++||+++.+.+..+.. ...+..++|+|++.+++++..++ .+.+||.++++.......          
T Consensus        87 l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~----------  155 (300)
T TIGR03866        87 LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV----------  155 (300)
T ss_pred             EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc----------
Confidence            54 445689999999998877776653 33467899999999999888765 567789887765543322          


Q ss_pred             cCCcceEEEEEEccCCCeEEEEe-CCCcEEEEeecC
Q 038439          145 DAGSYFISAVCWKSDSPTMLTAN-SQGTIKVLVLAA  179 (179)
Q Consensus       145 ~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~  179 (179)
                         ...+..++|+|++++|++++ .++.|++||+++
T Consensus       156 ---~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~  188 (300)
T TIGR03866       156 ---DQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT  188 (300)
T ss_pred             ---CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc
Confidence               23456789999999886554 589999999863

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.85  E-value=5.4e-20  Score=128.11  Aligned_cols=165  Identities=16%  Similarity=0.209  Sum_probs=129.2

Q ss_pred             CCCccEEEEEcCCceeEEee-cCCCceeEEEEcCCCCeEEEEeCCCcee------------eec-ccCceeEEEEeeC--
Q 038439            1 MAYGKVKVWCTRQEASVLNI-DMKANICCVKYNPGSSNYIAKYQSTAPC------------VHG-HKKAVSYVKFLSN--   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~------------~~~-~~~~i~~~~~~~~--   64 (179)
                      |..++|+|||++...+.+.+ .|++.|+++.++-...++.++...+..+            +.. ....+.-+.|+|.  
T Consensus        98 G~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr  177 (673)
T KOG4378|consen   98 GQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKR  177 (673)
T ss_pred             CcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccc
Confidence            45689999999965555555 4889999999998875444443222222            221 2345668899998  


Q ss_pred             CeEEEecCCCcEEEEecCCCcceeee-cCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCC
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTF-RGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDT  142 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~  142 (179)
                      .+|.+++.+|.|.+||+....++..+ +.|..+...++|+|. ..+|++.+.|..|.+||.+..+....+..        
T Consensus       178 ~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y--------  249 (673)
T KOG4378|consen  178 FLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY--------  249 (673)
T ss_pred             eeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee--------
Confidence            66788999999999999877666554 568889999999995 55678899999999999997666655554        


Q ss_pred             cccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          143 DEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                           ..+...++|.++|-+|+.|+..|.|..||++
T Consensus       250 -----~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R  280 (673)
T KOG4378|consen  250 -----SHPLSTVAFSECGTYLCAGNSKGELIAYDMR  280 (673)
T ss_pred             -----cCCcceeeecCCceEEEeecCCceEEEEecc
Confidence                 6678999999999999999999999999987

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=4.7e-19  Score=116.76  Aligned_cols=152  Identities=17%  Similarity=0.217  Sum_probs=123.2

Q ss_pred             ceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-CeEEEecC--CCcEE
Q 038439           14 EASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DELASAST--DSTLR   77 (179)
Q Consensus        14 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~--d~~v~   77 (179)
                      .++.+.+. ....|+++.|+++|..++++.          ..++.+  +..++-.+..++|... ..++.++.  |.+||
T Consensus         4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr   83 (311)
T KOG1446|consen    4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR   83 (311)
T ss_pred             cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence            34445554 478899999999998777765          333444  5556667788888776 66666666  88999


Q ss_pred             EEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEc
Q 038439           78 LWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWK  157 (179)
Q Consensus        78 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  157 (179)
                      ..++.+.+.++-|.+|...|.+++.+|-+..+++++.|++|++||++..++.-.+...            .  -...+|.
T Consensus        84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~------------~--~pi~AfD  149 (311)
T KOG1446|consen   84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS------------G--RPIAAFD  149 (311)
T ss_pred             EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC------------C--CcceeEC
Confidence            9999999999999999999999999999999999999999999999987776555432            2  2347899


Q ss_pred             cCCCeEEEEeCCCcEEEEeecC
Q 038439          158 SDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       158 ~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      |+|-++|++...+.|++||++.
T Consensus       150 p~GLifA~~~~~~~IkLyD~Rs  171 (311)
T KOG1446|consen  150 PEGLIFALANGSELIKLYDLRS  171 (311)
T ss_pred             CCCcEEEEecCCCeEEEEEecc
Confidence            9999999999988999999874

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.84  E-value=4e-20  Score=125.28  Aligned_cols=145  Identities=17%  Similarity=0.205  Sum_probs=122.1

Q ss_pred             CCCceeEEEEcCCCCeEEEEe------------------CCCcee--eecccCceeEEEEeeC--CeEEEecCCCcEEEE
Q 038439           22 MKANICCVKYNPGSSNYIAKY------------------QSTAPC--VHGHKKAVSYVKFLSN--DELASASTDSTLRLW   79 (179)
Q Consensus        22 ~~~~v~~~~~~~~~~~~~~~~------------------~~~~~~--~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iw   79 (179)
                      |+++|..++|+|..+..+|+|                  ...+++  +.+|...|.-+.|+|.  +.|++++.|..|.+|
T Consensus        80 Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iW  159 (472)
T KOG0303|consen   80 HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIW  159 (472)
T ss_pred             ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEE
Confidence            788999999999998999987                  223445  8999999999999999  899999999999999


Q ss_pred             ecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccC
Q 038439           80 DVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD  159 (179)
Q Consensus        80 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  159 (179)
                      |+.+++.+.+++ |...|.++.|+.||.++++.+.|..|+|||.++++.+....  .|         .+.....+.|-.+
T Consensus       160 nv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~--~h---------eG~k~~Raifl~~  227 (472)
T KOG0303|consen  160 NVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV--AH---------EGAKPARAIFLAS  227 (472)
T ss_pred             eccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc--cc---------cCCCcceeEEecc
Confidence            999999999987 99999999999999999999999999999999999887652  11         1445566778888


Q ss_pred             CCeEEEEeC---CCcEEEEeec
Q 038439          160 SPTMLTANS---QGTIKVLVLA  178 (179)
Q Consensus       160 ~~~l~~~~~---dg~i~iwd~~  178 (179)
                      +..+.+|-.   +..+-+||..
T Consensus       228 g~i~tTGfsr~seRq~aLwdp~  249 (472)
T KOG0303|consen  228 GKIFTTGFSRMSERQIALWDPN  249 (472)
T ss_pred             CceeeeccccccccceeccCcc
Confidence            885544433   6678888754

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=7.3e-19  Score=116.56  Aligned_cols=161  Identities=17%  Similarity=0.203  Sum_probs=121.8

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-------------CCC------cee-eecccCceeEE
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-------------QST------APC-VHGHKKAVSYV   59 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-------------~~~------~~~-~~~~~~~i~~~   59 (179)
                      |.|.+|.||+++ |+.+..++ ....-+..+.||+|+.++++|             +.+      +.. +++|...|..+
T Consensus       206 s~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~  284 (420)
T KOG2096|consen  206 SLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAA  284 (420)
T ss_pred             cCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeee
Confidence            468899999998 88888887 445677889999997666666             111      122 89999999999


Q ss_pred             EEeeC-CeEEEecCCCcEEEEecCC-------Ccceeeec----CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCc
Q 038439           60 KFLSN-DELASASTDSTLRLWDVKE-------NLPVRTFR----GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK  127 (179)
Q Consensus        60 ~~~~~-~~l~~~~~d~~v~iwd~~~-------~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~  127 (179)
                      +|+|+ ..+++.|.||..++||..-       .+.+....    .-.+....++++|.|+.|+... ...++++..++++
T Consensus       285 aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~  363 (420)
T KOG2096|consen  285 AFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGK  363 (420)
T ss_pred             eeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCc
Confidence            99999 9999999999999999753       12222221    1123334799999999887654 4679999999988


Q ss_pred             cccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEE
Q 038439          128 PVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVL  175 (179)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw  175 (179)
                      ....++-           .|+..|.+++|+++|+++++++ |..++++
T Consensus       364 ~~~~~e~-----------~h~~~Is~is~~~~g~~~atcG-dr~vrv~  399 (420)
T KOG2096|consen  364 DYPELED-----------IHSTTISSISYSSDGKYIATCG-DRYVRVI  399 (420)
T ss_pred             cchhHHH-----------hhcCceeeEEecCCCcEEeeec-ceeeeee
Confidence            7766542           2378899999999999999887 4466664

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=3.3e-19  Score=122.80  Aligned_cols=161  Identities=15%  Similarity=0.221  Sum_probs=134.3

Q ss_pred             cEEEEEcCCceeEE-eecCCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-CeEEEe
Q 038439            5 KVKVWCTRQEASVL-NIDMKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DELASA   70 (179)
Q Consensus         5 ~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~   70 (179)
                      .|.+|.+....... .+-.+++|.+++-+|.|..+++.+          .+++.+  +.+|-..|+|+.|+.| .+|++|
T Consensus        62 ~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTg  141 (476)
T KOG0646|consen   62 LLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITG  141 (476)
T ss_pred             cccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEec
Confidence            56777776554444 334788999999999994444443          666666  8889999999999999 999999


Q ss_pred             cCCCcEEEEecCC---------CcceeeecCCCCCeEEEEEeeC--CCEEEEeccCCcEEEEEcCCCccccccccCCCCC
Q 038439           71 STDSTLRLWDVKE---------NLPVRTFRGHMNEKNFVGLTVN--SEYIACGSESNEVYVYHKEISKPVTWHRFSSPDM  139 (179)
Q Consensus        71 ~~d~~v~iwd~~~---------~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~  139 (179)
                      +.||.|.+|++..         .++++.+..|.-+|+.+...+-  ..++++++.|.++++||+..+..+....+     
T Consensus       142 skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-----  216 (476)
T KOG0646|consen  142 SKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-----  216 (476)
T ss_pred             CCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-----
Confidence            9999999998742         4677888899999999988764  45799999999999999999998888776     


Q ss_pred             CCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          140 DDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       140 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                              ...+.+++..|-+..+++|+.+|.|.+.++.
T Consensus       217 --------p~si~av~lDpae~~~yiGt~~G~I~~~~~~  247 (476)
T KOG0646|consen  217 --------PSSIKAVALDPAERVVYIGTEEGKIFQNLLF  247 (476)
T ss_pred             --------CCcceeEEEcccccEEEecCCcceEEeeehh
Confidence                    6679999999999999999999999987753

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.83  E-value=1.2e-19  Score=123.09  Aligned_cols=118  Identities=18%  Similarity=0.298  Sum_probs=105.2

Q ss_pred             eecccCceeEEEEeeC--CeEEEecCCCcEEEEecCCC-------cceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcE
Q 038439           49 VHGHKKAVSYVKFLSN--DELASASTDSTLRLWDVKEN-------LPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEV  118 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v  118 (179)
                      +.+|+++|..+.|+|.  ..+++||.|.+|.||++...       +++..+.+|...|..++|+|. .+.|++++.|+.|
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v  156 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV  156 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence            7899999999999998  88999999999999998763       456778899999999999997 4568899999999


Q ss_pred             EEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          119 YVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       119 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      .+|++.+++.+..+..             ...|++++|+.+|.+|++++.|..|+|||.++
T Consensus       157 ~iWnv~tgeali~l~h-------------pd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~  204 (472)
T KOG0303|consen  157 SIWNVGTGEALITLDH-------------PDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRR  204 (472)
T ss_pred             EEEeccCCceeeecCC-------------CCeEEEEEeccCCceeeeecccceeEEEcCCC
Confidence            9999999998766442             77899999999999999999999999999764

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.83  E-value=1e-18  Score=126.62  Aligned_cols=166  Identities=17%  Similarity=0.221  Sum_probs=137.0

Q ss_pred             CCCccEEEEEcCC-ceeEEeec-CCCceeEEEEcCCC--CeEEEEe-------CCCc-----eeeecc-----cCceeEE
Q 038439            1 MAYGKVKVWCTRQ-EASVLNID-MKANICCVKYNPGS--SNYIAKY-------QSTA-----PCVHGH-----KKAVSYV   59 (179)
Q Consensus         1 ~~d~~i~vwd~~~-~~~~~~~~-~~~~v~~~~~~~~~--~~~~~~~-------~~~~-----~~~~~~-----~~~i~~~   59 (179)
                      |.|+-|.|+|+.. ..+++++. |...|+++.|.-.|  .+++.+|       +..+     .++..|     ...+..+
T Consensus       523 srdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm  602 (1080)
T KOG1408|consen  523 SRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDM  602 (1080)
T ss_pred             cCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEe
Confidence            5789999999864 44666775 78999999998877  5677777       1111     112222     3467899


Q ss_pred             EEeeC-CeEEEecCCCcEEEEecCCCcceeeecC---CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccC
Q 038439           60 KFLSN-DELASASTDSTLRLWDVKENLPVRTFRG---HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFS  135 (179)
Q Consensus        60 ~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~  135 (179)
                      +..|. .++++++.|..|+|||++++++.+.|++   |.+....+...|.|.|+++.+.|.++.++|.-+++++....  
T Consensus       603 ~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~--  680 (1080)
T KOG1408|consen  603 AVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT--  680 (1080)
T ss_pred             eeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc--
Confidence            99999 9999999999999999999999999985   45667778899999999999999999999999999986653  


Q ss_pred             CCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          136 SPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       136 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                               +| ...|+.+.|.+|.+.|++.+.||.|.||.+.
T Consensus       681 ---------GH-sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  681 ---------GH-SEAVTGVKFLNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             ---------Cc-chheeeeeecccchhheeecCCceEEEEECc
Confidence                     22 8899999999999999999999999999874

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.82  E-value=5.6e-18  Score=112.03  Aligned_cols=161  Identities=15%  Similarity=0.261  Sum_probs=125.8

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe----------CCCcee--e--ecccCceeEEEEeeC---Ce
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY----------QSTAPC--V--HGHKKAVSYVKFLSN---DE   66 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~--~~~~~~i~~~~~~~~---~~   66 (179)
                      ++|-|||-...+++.++....+|.++.+.++  +++++-          +..+.+  +  ....+.+.  +..|.   ..
T Consensus        75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC--~~~~~~~k~~  150 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLC--SLCPTSNKSL  150 (346)
T ss_pred             ceEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeecccCCCceE--eecCCCCceE
Confidence            5789999888889999999999999999987  455554          122222  1  11122222  23344   34


Q ss_pred             EEE-ecCCCcEEEEecCCCcc--eeeecCCCCCeEEEEEeeCCCEEEEeccCCc-EEEEEcCCCccccccccCCCCCCCC
Q 038439           67 LAS-ASTDSTLRLWDVKENLP--VRTFRGHMNEKNFVGLTVNSEYIACGSESNE-VYVYHKEISKPVTWHRFSSPDMDDT  142 (179)
Q Consensus        67 l~~-~~~d~~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~-v~vwd~~~~~~~~~~~~~~~~~~~~  142 (179)
                      |+. |-.-|.|+|-|+...+.  ...+..|.+.|.+++++-+|..+|+++..|+ |+|||.+++.+++.++....     
T Consensus       151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d-----  225 (346)
T KOG2111|consen  151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD-----  225 (346)
T ss_pred             EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc-----
Confidence            443 34568999999987554  4678899999999999999999999999997 78999999999988776443     


Q ss_pred             cccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          143 DEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                           ...|.+++|+|+..+|+++++.|+++||.++
T Consensus       226 -----~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~  256 (346)
T KOG2111|consen  226 -----RADIYCIAFSPNSSWLAVSSDKGTLHIFSLR  256 (346)
T ss_pred             -----hheEEEEEeCCCccEEEEEcCCCeEEEEEee
Confidence                 6789999999999999999999999999875

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.82  E-value=3.5e-18  Score=110.36  Aligned_cols=109  Identities=17%  Similarity=0.294  Sum_probs=86.7

Q ss_pred             cCceeEEEEeeC-CeEEE--ecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc---CCcEEEEEcCCC
Q 038439           53 KKAVSYVKFLSN-DELAS--ASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE---SNEVYVYHKEIS  126 (179)
Q Consensus        53 ~~~i~~~~~~~~-~~l~~--~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---d~~v~vwd~~~~  126 (179)
                      .++|.+++|+|+ ..|+.  |..+..|.+||++ ++.+..+.  ...+..+.|+|+|+++++++.   .|.|.+||.++.
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~  135 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK  135 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            456999999999 66544  4467799999997 66666664  456788999999999998864   467999999987


Q ss_pred             ccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC------CCcEEEEeec
Q 038439          127 KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS------QGTIKVLVLA  178 (179)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~iwd~~  178 (179)
                      +.+....              ...++.++|+|+|+++++++.      |+.++||+..
T Consensus       136 ~~i~~~~--------------~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  136 KKISTFE--------------HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             EEeeccc--------------cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            7776544              335789999999999998875      7889999863

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.82  E-value=2.9e-19  Score=117.38  Aligned_cols=128  Identities=23%  Similarity=0.344  Sum_probs=105.4

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCC--CeEEEEe-----------CCCcee--eecccCceeEEEEeeC-
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGS--SNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-   64 (179)
                      |-|.+++|||+++.+....|..++.|.+-+++|-.  ..++|+|           ..+..-  +.+|...|.++.|+|. 
T Consensus       121 SFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~  200 (397)
T KOG4283|consen  121 SFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSS  200 (397)
T ss_pred             cccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCc
Confidence            45899999999999999999999999999999943  2577777           233333  8899999999999999 


Q ss_pred             -CeEEEecCCCcEEEEecCCC-cceee--------------ecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcc
Q 038439           65 -DELASASTDSTLRLWDVKEN-LPVRT--------------FRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKP  128 (179)
Q Consensus        65 -~~l~~~~~d~~v~iwd~~~~-~~~~~--------------~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~  128 (179)
                       =.|++|+.||.|++||++.. -+...              -..|.+.++.++|..++.++++++.|..+++|+..+|+.
T Consensus       201 e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  201 EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN  280 (397)
T ss_pred             eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence             45789999999999999863 12211              224677899999999999999999999999999987753

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.82  E-value=7.3e-19  Score=118.59  Aligned_cols=171  Identities=17%  Similarity=0.278  Sum_probs=124.0

Q ss_pred             ccEEEEEcCCceeEEe----ecCCCceeEEEEcCCCCeEEEEe-----------CCC---cee-eecccCceeEEEEeeC
Q 038439            4 GKVKVWCTRQEASVLN----IDMKANICCVKYNPGSSNYIAKY-----------QST---APC-VHGHKKAVSYVKFLSN   64 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~-----------~~~---~~~-~~~~~~~i~~~~~~~~   64 (179)
                      +.|++|...++.....    ..|+..|..++|||....+++++           +.+   .++ .++|...|+.|.|+..
T Consensus       234 ~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~  313 (440)
T KOG0302|consen  234 KGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRR  313 (440)
T ss_pred             cceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCC
Confidence            4688888877654321    24889999999999988888887           333   344 7899999999999999


Q ss_pred             -CeEEEecCCCcEEEEecCC---CcceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCcccccc---ccCC
Q 038439           65 -DELASASTDSTLRLWDVKE---NLPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISKPVTWH---RFSS  136 (179)
Q Consensus        65 -~~l~~~~~d~~v~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~~~~~---~~~~  136 (179)
                       .+|++|+.||+++|||+++   ++++.+|+-|..+|+++.|+|. ...|++++.|.+|.+||+....-....   ....
T Consensus       314 ~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~  393 (440)
T KOG0302|consen  314 EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEG  393 (440)
T ss_pred             cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccc
Confidence             9999999999999999986   5678899999999999999996 556888999999999998753221100   0000


Q ss_pred             --CCCCCCcccC-CcceEEEEEEccCC-CeEEEEeCCCcEEEE
Q 038439          137 --PDMDDTDEDA-GSYFISAVCWKSDS-PTMLTANSQGTIKVL  175 (179)
Q Consensus       137 --~~~~~~~~~~-~~~~i~~~~~~~~~-~~l~~~~~dg~i~iw  175 (179)
                        ........-| +...+..+.|+++- .++++.+.|| +.||
T Consensus       394 L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  394 LQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             hhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence              0000011111 24567789999854 4677777787 4444

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=1.5e-18  Score=114.67  Aligned_cols=110  Identities=13%  Similarity=0.193  Sum_probs=93.7

Q ss_pred             CCCceeEEEEcCCCCeEEEEeCC-----------Ccee--eecccCceeEEEEeeC---CeEEEecCCCcEEEEecCCCc
Q 038439           22 MKANICCVKYNPGSSNYIAKYQS-----------TAPC--VHGHKKAVSYVKFLSN---DELASASTDSTLRLWDVKENL   85 (179)
Q Consensus        22 ~~~~v~~~~~~~~~~~~~~~~~~-----------~~~~--~~~~~~~i~~~~~~~~---~~l~~~~~d~~v~iwd~~~~~   85 (179)
                      |.++|++++.+-   .++++|.+           ...+  +-.|.+.|+++.|.++   +.|++|+.||.|.+|+....+
T Consensus        42 H~~sitavAVs~---~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~  118 (362)
T KOG0294|consen   42 HAGSITALAVSG---PYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE  118 (362)
T ss_pred             cccceeEEEecc---eeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE
Confidence            788999999874   56666622           2222  6678999999999998   499999999999999999999


Q ss_pred             ceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccccc
Q 038439           86 PVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF  134 (179)
Q Consensus        86 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~  134 (179)
                      ++.+++.|.+.|+.++.+|.+++.++.+.|+.+++||+-+++.-....+
T Consensus       119 ~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L  167 (362)
T KOG0294|consen  119 LLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL  167 (362)
T ss_pred             EeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc
Confidence            9999999999999999999999999999999999999988876554444

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.81  E-value=8.5e-18  Score=117.39  Aligned_cols=159  Identities=14%  Similarity=0.222  Sum_probs=127.6

Q ss_pred             CCccEEEEEcCCceeEEee-cCCCceeEEEEcCCCCeEEEEe--------------------------------------
Q 038439            2 AYGKVKVWCTRQEASVLNI-DMKANICCVKYNPGSSNYIAKY--------------------------------------   42 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~--------------------------------------   42 (179)
                      ++|.|.||+..+.+..+.. .|++.|.+++.-.+| .++..|                                      
T Consensus       265 S~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~G-tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~  343 (626)
T KOG2106|consen  265 SGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDG-TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDIL  343 (626)
T ss_pred             CCceEEEEeCCCceEEeEeeecCCceEEEEEecCc-cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEE
Confidence            4789999998776655444 588999999999988 677744                                      


Q ss_pred             -------------CCCcee-eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCC
Q 038439           43 -------------QSTAPC-VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE  107 (179)
Q Consensus        43 -------------~~~~~~-~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  107 (179)
                                   ..+-.+ ..+|......++.+|+ ++++|++.|+.+++|+  ..+++.+.. -..++.+++|+|.| 
T Consensus       344 vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-  419 (626)
T KOG2106|consen  344 VGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-  419 (626)
T ss_pred             EeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-
Confidence                         111111 5678888899999999 9999999999999999  445554433 35568899999999 


Q ss_pred             EEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          108 YIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       108 ~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .++.|...|...+.|.++...+....-             ..+++.++|+|+|.+||.|+.|+.|+||-+.
T Consensus       420 ~va~Gt~~G~w~V~d~e~~~lv~~~~d-------------~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs  477 (626)
T KOG2106|consen  420 VVAVGTATGRWFVLDTETQDLVTIHTD-------------NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVS  477 (626)
T ss_pred             eEEEeeccceEEEEecccceeEEEEec-------------CCceEEEEEcCCCCEEEEecCCCeEEEEEEC
Confidence            899999999999999998666655443             5679999999999999999999999999764

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.81  E-value=1.3e-18  Score=119.76  Aligned_cols=163  Identities=18%  Similarity=0.269  Sum_probs=130.0

Q ss_pred             CCCccEEEEEcCCceeE----Ee-------------e--cCCCceeEEEEcCCCCeEEEEe-----------CCCcee--
Q 038439            1 MAYGKVKVWCTRQEASV----LN-------------I--DMKANICCVKYNPGSSNYIAKY-----------QSTAPC--   48 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~----~~-------------~--~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--   48 (179)
                      +.|++|.=|++.+++..    ..             -  .|...+.+++.+||+ .++++|           ++.+++  
T Consensus       161 sk~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg-kylatgg~d~~v~Iw~~~t~ehv~~  239 (479)
T KOG0299|consen  161 SKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG-KYLATGGRDRHVQIWDCDTLEHVKV  239 (479)
T ss_pred             CCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC-cEEEecCCCceEEEecCcccchhhc
Confidence            46788888998877633    11             0  245679999999999 455555           455566  


Q ss_pred             eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCc
Q 038439           49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK  127 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~  127 (179)
                      +.+|.+.|.+++|-.. ..+++++.|+.|++|++.....+.++.+|+..|..+.-...++.+-+|+.|+++++|++....
T Consensus       240 ~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees  319 (479)
T KOG0299|consen  240 FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES  319 (479)
T ss_pred             ccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc
Confidence            7899999999999988 999999999999999999988899999999999999887778888888899999999995432


Q ss_pred             cccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          128 PVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .+. +..           + ...+-+++|-. ...+++|+.+|.|.+|++.
T Consensus       320 qli-frg-----------~-~~sidcv~~In-~~HfvsGSdnG~IaLWs~~  356 (479)
T KOG0299|consen  320 QLI-FRG-----------G-EGSIDCVAFIN-DEHFVSGSDNGSIALWSLL  356 (479)
T ss_pred             eee-eeC-----------C-CCCeeeEEEec-ccceeeccCCceEEEeeec
Confidence            221 111           1 66788999874 5668999999999999974

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.80  E-value=3.7e-18  Score=113.46  Aligned_cols=169  Identities=20%  Similarity=0.310  Sum_probs=128.7

Q ss_pred             CCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee-----eecccCceeEEEEeeC
Q 038439            2 AYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC-----VHGHKKAVSYVKFLSN   64 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~-----~~~~~~~i~~~~~~~~   64 (179)
                      .-|.|+|.|+.++++...+. |...|+.+.++|+.++++.++           ++..++     +.+|...|.++.|+++
T Consensus       113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~  192 (385)
T KOG1034|consen  113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD  192 (385)
T ss_pred             ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC
Confidence            34789999999998888775 889999999999988888887           455555     6789999999999999


Q ss_pred             -CeEEEecCCCcEEEEecCCCc----------------------------------------------------------
Q 038439           65 -DELASASTDSTLRLWDVKENL----------------------------------------------------------   85 (179)
Q Consensus        65 -~~l~~~~~d~~v~iwd~~~~~----------------------------------------------------------   85 (179)
                       .++++++.|..+++|++...+                                                          
T Consensus       193 gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscena  272 (385)
T KOG1034|consen  193 GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENA  272 (385)
T ss_pred             CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCce
Confidence             999999999999999987310                                                          


Q ss_pred             ------------------------ceeeecCCCCCeEEEEE--eeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCC
Q 038439           86 ------------------------PVRTFRGHMNEKNFVGL--TVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDM  139 (179)
Q Consensus        86 ------------------------~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~  139 (179)
                                              .+..++-....++.+.|  .|.++.|+.|...|.|.+||++..++...-.+.... 
T Consensus       273 I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~-  351 (385)
T KOG1034|consen  273 IVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSK-  351 (385)
T ss_pred             EEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecc-
Confidence                                    00111111234445554  455788999999999999999998774222221110 


Q ss_pred             CCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          140 DDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       140 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                             ....|.+.+|+.|+..|+..++|++|.-||-.
T Consensus       352 -------~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  352 -------SGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             -------ccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence                   15679999999999999999999999999853

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=1.2e-17  Score=109.88  Aligned_cols=142  Identities=12%  Similarity=0.153  Sum_probs=116.0

Q ss_pred             CCCceeEEEEcCCCCeEEEEe----------CCCcee-eecccCceeEEEEeeCCeEEEecCCCcEEEEecCCCcceeee
Q 038439           22 MKANICCVKYNPGSSNYIAKY----------QSTAPC-VHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTF   90 (179)
Q Consensus        22 ~~~~v~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~   90 (179)
                      ....|.++.|+|.++.|+++.          ...... .-.|..++.+.+|.++..+++|+.|+.|+.+|+.+++. ..+
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~-~~i   90 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNE-DQI   90 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcc-eee
Confidence            467799999999988888887          111111 44688999999999888999999999999999998764 455


Q ss_pred             cCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCC
Q 038439           91 RGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG  170 (179)
Q Consensus        91 ~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  170 (179)
                      ..|..+++++.+++....+++|+.|+.|++||.+.......+..             ...|.++..  .++.|++|+.+.
T Consensus        91 gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-------------~kkVy~~~v--~g~~LvVg~~~r  155 (323)
T KOG1036|consen   91 GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-------------GKKVYCMDV--SGNRLVVGTSDR  155 (323)
T ss_pred             ccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-------------CceEEEEec--cCCEEEEeecCc
Confidence            67899999999999888899999999999999998554444332             447877766  578899999999


Q ss_pred             cEEEEeecC
Q 038439          171 TIKVLVLAA  179 (179)
Q Consensus       171 ~i~iwd~~~  179 (179)
                      .+.+||+++
T Consensus       156 ~v~iyDLRn  164 (323)
T KOG1036|consen  156 KVLIYDLRN  164 (323)
T ss_pred             eEEEEEccc
Confidence            999999975

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.80  E-value=3.8e-18  Score=123.76  Aligned_cols=145  Identities=18%  Similarity=0.186  Sum_probs=111.3

Q ss_pred             CceeEEEEcCCCCeEEEEeCCC-----------cee--eecccCceeEEEEeeC----CeEEEecCCCcEEEEecCCC-c
Q 038439           24 ANICCVKYNPGSSNYIAKYQST-----------APC--VHGHKKAVSYVKFLSN----DELASASTDSTLRLWDVKEN-L   85 (179)
Q Consensus        24 ~~v~~~~~~~~~~~~~~~~~~~-----------~~~--~~~~~~~i~~~~~~~~----~~l~~~~~d~~v~iwd~~~~-~   85 (179)
                      -.+.+++.+|+| +.+++|+.+           +.+  +.+|+..|.|+.|+..    .+|++++.|..|.+||+... .
T Consensus       460 ~G~R~~~vSp~g-qhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~  538 (1080)
T KOG1408|consen  460 FGFRALAVSPDG-QHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD  538 (1080)
T ss_pred             cceEEEEECCCc-ceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc
Confidence            458999999999 566776111           111  7899999999999855    68999999999999998542 2


Q ss_pred             ceeeecCCCC-------------------------------------------------CeEEEEEeeCCCEEEEeccCC
Q 038439           86 PVRTFRGHMN-------------------------------------------------EKNFVGLTVNSEYIACGSESN  116 (179)
Q Consensus        86 ~~~~~~~~~~-------------------------------------------------~v~~~~~~~~~~~~~~~~~d~  116 (179)
                      +++++.+|.+                                                 .++.++..|..+++++++.|+
T Consensus       539 l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDr  618 (1080)
T KOG1408|consen  539 LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDR  618 (1080)
T ss_pred             hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEeccc
Confidence            2222222222                                                 355677778888889999999


Q ss_pred             cEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          117 EVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       117 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .|+|||+++++....++-...         |.+....+...|.|.|+++.+.|.++.++|.-
T Consensus       619 nirif~i~sgKq~k~FKgs~~---------~eG~lIKv~lDPSgiY~atScsdktl~~~Df~  671 (1080)
T KOG1408|consen  619 NIRIFDIESGKQVKSFKGSRD---------HEGDLIKVILDPSGIYLATSCSDKTLCFVDFV  671 (1080)
T ss_pred             ceEEEeccccceeeeeccccc---------CCCceEEEEECCCccEEEEeecCCceEEEEec
Confidence            999999999998877664321         15677889999999999999999999999974

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.80  E-value=7.9e-18  Score=120.24  Aligned_cols=176  Identities=15%  Similarity=0.183  Sum_probs=121.4

Q ss_pred             CCccEEEEEcCCcee-------EEeecCCCceeEEEEcCCCCeEEEEe-----------CCCcee----eecccCceeEE
Q 038439            2 AYGKVKVWCTRQEAS-------VLNIDMKANICCVKYNPGSSNYIAKY-----------QSTAPC----VHGHKKAVSYV   59 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~----~~~~~~~i~~~   59 (179)
                      +||.|.++|.....-       ..-+.|...|..+.|.| |...++..           ...+.+    +.+|...+.++
T Consensus        72 E~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~  150 (720)
T KOG0321|consen   72 EDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSE  150 (720)
T ss_pred             CCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchh
Confidence            689999999765332       12234899999999999 44555443           222333    67899999999


Q ss_pred             EEeeC--CeEEEecCCCcEEEEecCCCc---------------------------ceeeecCCCCCeEE---EEEeeCCC
Q 038439           60 KFLSN--DELASASTDSTLRLWDVKENL---------------------------PVRTFRGHMNEKNF---VGLTVNSE  107 (179)
Q Consensus        60 ~~~~~--~~l~~~~~d~~v~iwd~~~~~---------------------------~~~~~~~~~~~v~~---~~~~~~~~  107 (179)
                      +|.|.  ..|++|+.|+.+.|||++-..                           .+..-+.+...+.+   +.+..|..
T Consensus       151 cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~  230 (720)
T KOG0321|consen  151 CFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES  230 (720)
T ss_pred             hhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc
Confidence            99999  789999999999999987421                           01112223444554   56677888


Q ss_pred             EEEEecc-CCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          108 YIACGSE-SNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       108 ~~~~~~~-d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      .|++++. |+.|+|||++...................... ...+.++.....|.+|++.+.|+.|+.||+.+
T Consensus       231 tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skr-s~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s  302 (720)
T KOG0321|consen  231 TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKR-SVGQVNLILDSSGTYLFASCTDNSIYFYNMRS  302 (720)
T ss_pred             eeeeccCCCcceEEEeecccccccccCCCcccCccCcccc-eeeeEEEEecCCCCeEEEEecCCcEEEEeccc
Confidence            8998888 99999999997654332221111000000011 44678888888899999999999999999863

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.80  E-value=1.5e-17  Score=118.21  Aligned_cols=165  Identities=18%  Similarity=0.234  Sum_probs=132.8

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeE-EEEe-------------------------------------
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNY-IAKY-------------------------------------   42 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~-------------------------------------   42 (179)
                      |+||+|+||.+.++.++.++...+.|.|++|+|.+..- ++++                                     
T Consensus       419 sdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~  498 (733)
T KOG0650|consen  419 SDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAA  498 (733)
T ss_pred             CCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCccc
Confidence            68999999999999999999999999999999987543 3333                                     


Q ss_pred             ------------CCCceeeecccCceeEEEEeeC-CeEEEecCC---CcEEEEecCCCcceeeecCCCCCeEEEEEeeCC
Q 038439           43 ------------QSTAPCVHGHKKAVSYVKFLSN-DELASASTD---STLRLWDVKENLPVRTFRGHMNEKNFVGLTVNS  106 (179)
Q Consensus        43 ------------~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  106 (179)
                                  ..+-++.-.|...|..+.|+.. .+|++...+   ..|.|.++...+....|+...+.+.++.|+|..
T Consensus       499 ~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~  578 (733)
T KOG0650|consen  499 VVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSK  578 (733)
T ss_pred             ceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCC
Confidence                        0000113457788999999999 888887653   478899998776666676667789999999998


Q ss_pred             CEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          107 EYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       107 ~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .++++++. ..|++||+...+.+..+...            ...|..++.+|.|..|+.|+.|+.+..||+.
T Consensus       579 p~lfVaTq-~~vRiYdL~kqelvKkL~tg------------~kwiS~msihp~GDnli~gs~d~k~~WfDld  637 (733)
T KOG0650|consen  579 PYLFVATQ-RSVRIYDLSKQELVKKLLTG------------SKWISSMSIHPNGDNLILGSYDKKMCWFDLD  637 (733)
T ss_pred             ceEEEEec-cceEEEehhHHHHHHHHhcC------------CeeeeeeeecCCCCeEEEecCCCeeEEEEcc
Confidence            88888774 67999999887666655432            6689999999999999999999999999974

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=4.2e-17  Score=117.13  Aligned_cols=171  Identities=12%  Similarity=0.142  Sum_probs=127.6

Q ss_pred             CCccEEEEEcCCceeE-Eee--cCCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-C
Q 038439            2 AYGKVKVWCTRQEASV-LNI--DMKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-D   65 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~-~~~--~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~   65 (179)
                      .||.|.+|++...=.. ..+  ...+.|.+++|++.+ +|+.+|          .+.+++  +....+.|++++.+|. .
T Consensus        45 t~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~  123 (691)
T KOG2048|consen   45 TDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENT  123 (691)
T ss_pred             cCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccc
Confidence            5899999999875332 233  356789999999776 899888          333444  6667789999999999 8


Q ss_pred             eEEEecCCCcEEEEecCCCccee--eecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCc
Q 038439           66 ELASASTDSTLRLWDVKENLPVR--TFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTD  143 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~  143 (179)
                      .++.|+.||.+..++...++...  .+....+.+.+++|+|++..++.|+.||.|++||...+..+......-..   ..
T Consensus       124 ~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~---l~  200 (691)
T KOG2048|consen  124 ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDR---LS  200 (691)
T ss_pred             eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccc---cc
Confidence            99999999977777766654432  23334678999999999999999999999999999998876632221111   00


Q ss_pred             ccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          144 EDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       144 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ... ..-|+++.|-.+ ..|++|...|+|.+||..
T Consensus       201 k~~-~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~  233 (691)
T KOG2048|consen  201 KRE-PTIVWSVLFLRD-STIASGDSAGTVTFWDSI  233 (691)
T ss_pred             cCC-ceEEEEEEEeec-CcEEEecCCceEEEEccc
Confidence            001 556888888755 568999999999999964

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.80  E-value=7.2e-18  Score=110.51  Aligned_cols=175  Identities=16%  Similarity=0.301  Sum_probs=126.5

Q ss_pred             CCccEEEEEcCCcee-EEee------cCCCceeEEEEcC--CCCeEEEEe---------CCCcee---eecccCceeEEE
Q 038439            2 AYGKVKVWCTRQEAS-VLNI------DMKANICCVKYNP--GSSNYIAKY---------QSTAPC---VHGHKKAVSYVK   60 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~-~~~~------~~~~~v~~~~~~~--~~~~~~~~~---------~~~~~~---~~~~~~~i~~~~   60 (179)
                      .|+.|.+|++..+.. +..+      .+....++-+|+|  ++..+.+++         ++.+..   -.+|...+..+.
T Consensus       142 ~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlD  221 (370)
T KOG1007|consen  142 DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLD  221 (370)
T ss_pred             ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeecc
Confidence            478899999987654 3333      2456688999999  554555554         333333   567888999999


Q ss_pred             EeeC--CeEEEecCCCcEEEEecCC-CcceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCccccccccCC
Q 038439           61 FLSN--DELASASTDSTLRLWDVKE-NLPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISKPVTWHRFSS  136 (179)
Q Consensus        61 ~~~~--~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~  136 (179)
                      |+|+  -.|++|+.|+.|++||.+. ..+++.+.+|...|+++.|+|. .+++++|+.|..|.+|...+-...+.+....
T Consensus       222 fNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~  301 (370)
T KOG1007|consen  222 FNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFED  301 (370)
T ss_pred             CCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccccccccc
Confidence            9999  6789999999999999986 5678899999999999999995 6778999999999999865432111111111


Q ss_pred             C------------------CCCCCcccCCcceEEEEEEcc-CCCeEEEEeCCCcEEEEee
Q 038439          137 P------------------DMDDTDEDAGSYFISAVCWKS-DSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       137 ~------------------~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~  177 (179)
                      .                  ........ |...|++++|+. +.=.+++-+.||++.|=.+
T Consensus       302 dese~e~~dseer~kpL~dg~l~tyde-hEDSVY~~aWSsadPWiFASLSYDGRviIs~V  360 (370)
T KOG1007|consen  302 DESESEDEDSEERVKPLQDGQLETYDE-HEDSVYALAWSSADPWIFASLSYDGRVIISSV  360 (370)
T ss_pred             ccccCcchhhHHhcccccccccccccc-cccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence            0                  01112233 388999999987 4456678899999887443

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.79  E-value=1.6e-18  Score=124.35  Aligned_cols=166  Identities=15%  Similarity=0.208  Sum_probs=128.3

Q ss_pred             CCccEEEEEcCCcee-----EEeecCCCceeEEEEcCCCCeEEEEe--------------------CCCceeeecccCce
Q 038439            2 AYGKVKVWCTRQEAS-----VLNIDMKANICCVKYNPGSSNYIAKY--------------------QSTAPCVHGHKKAV   56 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~i   56 (179)
                      .-|.|-||+++..-.     +-.+..+..|+.+.|.|-...-++++                    .+.+.++..|...|
T Consensus       601 ~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI  680 (1012)
T KOG1445|consen  601 SGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKI  680 (1012)
T ss_pred             CCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceE
Confidence            457889999876432     23344677899999999666666655                    11122288999999


Q ss_pred             eEEEEeeC--CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccccc
Q 038439           57 SYVKFLSN--DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF  134 (179)
Q Consensus        57 ~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~  134 (179)
                      +++.|+|-  ..|++++.|-+|++||++..+....+.+|...|..++|+|+|+.+++.+.||.|++|..++++... ++-
T Consensus       681 ~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv-~Eg  759 (1012)
T KOG1445|consen  681 TSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPV-YEG  759 (1012)
T ss_pred             EEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcc-ccC
Confidence            99999998  899999999999999999999888999999999999999999999999999999999999865421 222


Q ss_pred             CCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCC----cEEEEee
Q 038439          135 SSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG----TIKVLVL  177 (179)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~iwd~  177 (179)
                      ..+.         +..--.+.|..+|+++++.+.|.    .|.+||.
T Consensus       760 ~gpv---------gtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~A  797 (1012)
T KOG1445|consen  760 KGPV---------GTRGARILWACDGRIVIVVGFDKSSERQVQMYDA  797 (1012)
T ss_pred             CCCc---------cCcceeEEEEecCcEEEEecccccchhhhhhhhh
Confidence            2211         23345577888999998887764    4556653

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=9.5e-18  Score=111.15  Aligned_cols=147  Identities=17%  Similarity=0.304  Sum_probs=115.7

Q ss_pred             EeecCCCceeEEEEcCCCCeEEEEe-CCCcee------------eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCC
Q 038439           18 LNIDMKANICCVKYNPGSSNYIAKY-QSTAPC------------VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKE   83 (179)
Q Consensus        18 ~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~------------~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~   83 (179)
                      .++.+.. ..|+.|++-| .++|+| ..++.+            +.+|..+|++++|+++ +.|+|+|.|..+.+||+..
T Consensus        19 ~tld~~~-a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~   96 (405)
T KOG1273|consen   19 HTLDNPL-AECCQFSRWG-DYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK   96 (405)
T ss_pred             eeccCCc-cceEEeccCc-ceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccC
Confidence            3444444 8899999999 677776 333332            7789999999999999 9999999999999999998


Q ss_pred             CcceeeecCCCC-----------------------------------------------CeEEEEEeeCCCEEEEeccCC
Q 038439           84 NLPVRTFRGHMN-----------------------------------------------EKNFVGLTVNSEYIACGSESN  116 (179)
Q Consensus        84 ~~~~~~~~~~~~-----------------------------------------------~v~~~~~~~~~~~~~~~~~d~  116 (179)
                      +.+++.+.- .+                                               ...+..|.+.|++|++|...|
T Consensus        97 gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKG  175 (405)
T KOG1273|consen   97 GSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKG  175 (405)
T ss_pred             CCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcc
Confidence            865544321 00                                               011123667789999999999


Q ss_pred             cEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          117 EVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       117 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .+.++|..+.+++..++...           ...|.++.++..|+.|+.-+.|..|+.|+++
T Consensus       176 kllv~~a~t~e~vas~rits-----------~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  176 KLLVYDAETLECVASFRITS-----------VQAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             eEEEEecchheeeeeeeech-----------heeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence            99999999998888777642           2578899999999999999999999999975

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.79  E-value=8.9e-18  Score=120.91  Aligned_cols=122  Identities=23%  Similarity=0.330  Sum_probs=102.2

Q ss_pred             eecccCceeEEEEeeC-CeEEEecCCC-----cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEE
Q 038439           49 VHGHKKAVSYVKFLSN-DELASASTDS-----TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYH  122 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~-----~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd  122 (179)
                      +.+|...|.+++.+|+ +++++++...     .|++|+..+...++.+..|.-.|+.++|+|||++|++.+.|+++.+|.
T Consensus       521 LYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~  600 (764)
T KOG1063|consen  521 LYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYE  600 (764)
T ss_pred             hccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeee
Confidence            6688899999999999 8999987644     589999998888888999999999999999999999999999999999


Q ss_pred             cCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          123 KEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ...... ..+.+..       ...|..-|++..|+|++.++++++.|.+|++|...
T Consensus       601 ~~~~~~-~e~~fa~-------~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~  648 (764)
T KOG1063|consen  601 VQEDIK-DEFRFAC-------LKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEP  648 (764)
T ss_pred             eecccc-hhhhhcc-------ccccceEEEEcccCcccceeEEecCCceEEEEecc
Confidence            854322 2222111       13348889999999999999999999999999764

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=4.6e-18  Score=117.30  Aligned_cols=169  Identities=12%  Similarity=0.182  Sum_probs=132.4

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCCCcee-e----------ecccCce--eEEEEeeC-Ce
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPC-V----------HGHKKAV--SYVKFLSN-DE   66 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~i--~~~~~~~~-~~   66 (179)
                      |..|.|.|....+++.+.++...+.|..++|+.++..+++++.+++.. +          ..-.+.|  ++++.+++ .+
T Consensus       322 G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~y  401 (514)
T KOG2055|consen  322 GNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSY  401 (514)
T ss_pred             ccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCce
Confidence            467889999999999999999999999999999999999988444332 0          0112223  45666777 99


Q ss_pred             EEEecCCCcEEEEecCC------CcceeeecCCCCCeEEEEEeeCCCEEEEecc--CCcEEEEEcCCCccccccccCCCC
Q 038439           67 LASASTDSTLRLWDVKE------NLPVRTFRGHMNEKNFVGLTVNSEYIACGSE--SNEVYVYHKEISKPVTWHRFSSPD  138 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--d~~v~vwd~~~~~~~~~~~~~~~~  138 (179)
                      |++||..|.|.|||..+      .+++..+..-...|.++.|+|+++.++.++.  ...+++-.+.+......+......
T Consensus       402 lA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~  481 (514)
T KOG2055|consen  402 LATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTK  481 (514)
T ss_pred             EEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCc
Confidence            99999999999999754      4566666666778999999999999887765  677999888776555444332111


Q ss_pred             CCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          139 MDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       139 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                               -+.++|++|+|.+.+|+.|..+|++.+|.|.
T Consensus       482 ---------vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  482 ---------VGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ---------ccceEEEEecCCCceEEeecCCCceeeEeec
Confidence                     4579999999999999999999999999874

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.79  E-value=1.8e-18  Score=121.47  Aligned_cols=124  Identities=22%  Similarity=0.354  Sum_probs=96.9

Q ss_pred             CCCceeEEEEcCCCCeEEEEe---------------------------------------CCCcee--eecccCceeEEE
Q 038439           22 MKANICCVKYNPGSSNYIAKY---------------------------------------QSTAPC--VHGHKKAVSYVK   60 (179)
Q Consensus        22 ~~~~v~~~~~~~~~~~~~~~~---------------------------------------~~~~~~--~~~~~~~i~~~~   60 (179)
                      .+..|++++|-|.++.++.+.                                       ....|+  +.--...|+.++
T Consensus       218 ~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~  297 (636)
T KOG2394|consen  218 NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFA  297 (636)
T ss_pred             cccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccccee
Confidence            347799999998776666655                                       111233  222345788999


Q ss_pred             EeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCC
Q 038439           61 FLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDM  139 (179)
Q Consensus        61 ~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~  139 (179)
                      |+|| .+|++.+.||.+||||+.+.+++..++..-+...|++|+|||+||++|++|..|.||.+...+.+..-.      
T Consensus       298 FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq------  371 (636)
T KOG2394|consen  298 FSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ------  371 (636)
T ss_pred             EcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc------
Confidence            9999 999999999999999999888887888778889999999999999999999999999998877654321      


Q ss_pred             CCCcccCCcceEEEEEEc
Q 038439          140 DDTDEDAGSYFISAVCWK  157 (179)
Q Consensus       140 ~~~~~~~~~~~i~~~~~~  157 (179)
                           + |...|+.++|.
T Consensus       372 -----G-HkSWVs~VaFD  383 (636)
T KOG2394|consen  372 -----G-HKSWVSVVAFD  383 (636)
T ss_pred             -----c-cccceeeEeec
Confidence                 1 15566666665

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=2.8e-18  Score=114.42  Aligned_cols=175  Identities=18%  Similarity=0.284  Sum_probs=128.0

Q ss_pred             CCCccEEEEEcCCceeEEeec---C-CCceeEEEEcCCCCeEEEEe---------------CCCce-e---eecccCcee
Q 038439            1 MAYGKVKVWCTRQEASVLNID---M-KANICCVKYNPGSSNYIAKY---------------QSTAP-C---VHGHKKAVS   57 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~---~-~~~v~~~~~~~~~~~~~~~~---------------~~~~~-~---~~~~~~~i~   57 (179)
                      +.||+|++||++.......+.   + ..+..+++.+..+ +++++|               +..+. +   ...|...|+
T Consensus        91 ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT  169 (376)
T KOG1188|consen   91 SSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVT  169 (376)
T ss_pred             ccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcC-CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcce
Confidence            479999999999876554443   2 2467788877666 688887               33333 4   678999999


Q ss_pred             EEEEeeC--CeEEEecCCCcEEEEecCCC---cceeeecCCCCCeEEEEEeeCC-CEEEEeccCCcEEEEEcCCCccccc
Q 038439           58 YVKFLSN--DELASASTDSTLRLWDVKEN---LPVRTFRGHMNEKNFVGLTVNS-EYIACGSESNEVYVYHKEISKPVTW  131 (179)
Q Consensus        58 ~~~~~~~--~~l~~~~~d~~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~v~vwd~~~~~~~~~  131 (179)
                      +++|+|.  ++|++||.||.|.+||+...   ..+...-.+.+.|..+.|..++ +.|.+-+..+...+|+++.+.+...
T Consensus       170 ~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~  249 (376)
T KOG1188|consen  170 QLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETW  249 (376)
T ss_pred             eEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhc
Confidence            9999999  89999999999999999753   2333444567789999998876 4578888899999999987764433


Q ss_pred             cccCCC--------------------------------------------------CCCCCcccCCcceEEEEEEccCCC
Q 038439          132 HRFSSP--------------------------------------------------DMDDTDEDAGSYFISAVCWKSDSP  161 (179)
Q Consensus       132 ~~~~~~--------------------------------------------------~~~~~~~~~~~~~i~~~~~~~~~~  161 (179)
                      .+....                                                  .......++|..-|+++.|...+.
T Consensus       250 ~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~  329 (376)
T KOG1188|consen  250 LENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKND  329 (376)
T ss_pred             ccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccc
Confidence            221110                                                  111122333456677778887889


Q ss_pred             eEEEEeCCCcEEEEe
Q 038439          162 TMLTANSQGTIKVLV  176 (179)
Q Consensus       162 ~l~~~~~dg~i~iwd  176 (179)
                      .+++|+.||.+.+|.
T Consensus       330 ~l~TGGEDG~l~~Wk  344 (376)
T KOG1188|consen  330 VLYTGGEDGLLQAWK  344 (376)
T ss_pred             eeeccCCCceEEEEe
Confidence            999999999999997

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=4e-17  Score=107.75  Aligned_cols=175  Identities=16%  Similarity=0.278  Sum_probs=115.9

Q ss_pred             CCCccEEEEEcCCc--e--eEEeec-CCCceeEEEEcC-CCCeEEEEe-----------------CCCc----ee-eecc
Q 038439            1 MAYGKVKVWCTRQE--A--SVLNID-MKANICCVKYNP-GSSNYIAKY-----------------QSTA----PC-VHGH   52 (179)
Q Consensus         1 ~~d~~i~vwd~~~~--~--~~~~~~-~~~~v~~~~~~~-~~~~~~~~~-----------------~~~~----~~-~~~~   52 (179)
                      |.|++|+|||..+.  +  +..... |.+.|..+.|.+ .-.+++|+.                 ..++    .. +...
T Consensus        32 SsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Ds  111 (361)
T KOG2445|consen   32 SSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDS  111 (361)
T ss_pred             cCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecC
Confidence            57899999996433  2  333333 788899999954 323556655                 0010    11 4455


Q ss_pred             cCceeEEEEeeC---CeEEEecCCCcEEEEecCCC---------------------------------------------
Q 038439           53 KKAVSYVKFLSN---DELASASTDSTLRLWDVKEN---------------------------------------------   84 (179)
Q Consensus        53 ~~~i~~~~~~~~---~~l~~~~~d~~v~iwd~~~~---------------------------------------------   84 (179)
                      ...|+.+.|.|.   -.+++++.||.+|||+....                                             
T Consensus       112 rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs  191 (361)
T KOG2445|consen  112 RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGS  191 (361)
T ss_pred             CcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEc
Confidence            677889999988   35788888999999876431                                             


Q ss_pred             ----------------------cceeeecCCCCCeEEEEEeeC-C---CEEEEeccCCcEEEEEcCCCc-cccccccCCC
Q 038439           85 ----------------------LPVRTFRGHMNEKNFVGLTVN-S---EYIACGSESNEVYVYHKEISK-PVTWHRFSSP  137 (179)
Q Consensus        85 ----------------------~~~~~~~~~~~~v~~~~~~~~-~---~~~~~~~~d~~v~vwd~~~~~-~~~~~~~~~~  137 (179)
                                            ..+.++..|..+|+.++|.|+ |   ..||+++.|| |+||.++... .+..-+...+
T Consensus       192 ~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~  270 (361)
T KOG2445|consen  192 DEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAP  270 (361)
T ss_pred             ccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCC
Confidence                                  011223356778999999997 3   4589999999 9999998522 1111000000


Q ss_pred             --------CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          138 --------DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       138 --------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                              .......+| .+.|+.++|+-.|..|++.+.||.+++|..
T Consensus       271 ~~~~~l~v~~vs~~~~H-~~~VWrv~wNmtGtiLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  271 DLMTDLPVEKVSELDDH-NGEVWRVRWNMTGTILSSTGDDGCVRLWKA  317 (361)
T ss_pred             CCccccceEEeeeccCC-CCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence                    011112333 889999999999999999999999999963

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=1.8e-17  Score=114.44  Aligned_cols=166  Identities=13%  Similarity=0.170  Sum_probs=130.6

Q ss_pred             CCCccEEEEEcCC--ceeEEeec-CCCceeEEEEcCCCC-eEEEEe----------CCCc--ee--eecc-cCceeEEEE
Q 038439            1 MAYGKVKVWCTRQ--EASVLNID-MKANICCVKYNPGSS-NYIAKY----------QSTA--PC--VHGH-KKAVSYVKF   61 (179)
Q Consensus         1 ~~d~~i~vwd~~~--~~~~~~~~-~~~~v~~~~~~~~~~-~~~~~~----------~~~~--~~--~~~~-~~~i~~~~~   61 (179)
                      |-||+++||-+..  ...++.+. .+.+|.+.+|+|+|. .++++|          .+.+  .+  ..++ ...+..+..
T Consensus       232 G~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeV  311 (514)
T KOG2055|consen  232 GLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEV  311 (514)
T ss_pred             cCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEe
Confidence            4689999998764  34555665 678999999999998 455554          1111  11  2333 345677888


Q ss_pred             eeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCC
Q 038439           62 LSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMD  140 (179)
Q Consensus        62 ~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~  140 (179)
                      +++ ++++..+..|.|.+.-..+++.+.+++. .+.+..+.|+.|++.|++++.+|.|.+||++...++..+...+    
T Consensus       312 Shd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G----  386 (514)
T KOG2055|consen  312 SHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDG----  386 (514)
T ss_pred             cCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecC----
Confidence            999 9999999999999999999999999874 7789999999999999999999999999999987776665421    


Q ss_pred             CCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          141 DTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       141 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                             .-.-++++.++++.+||+|+..|.|.|||.+
T Consensus       387 -------~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~  417 (514)
T KOG2055|consen  387 -------SVHGTSLCISLNGSYLATGSDSGIVNIYDGN  417 (514)
T ss_pred             -------ccceeeeeecCCCceEEeccCcceEEEeccc
Confidence                   2234567778999999999999999999964

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=5e-18  Score=116.49  Aligned_cols=144  Identities=19%  Similarity=0.228  Sum_probs=116.0

Q ss_pred             CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC--CeEEEecCCCcEEEEecCCCcc
Q 038439           22 MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN--DELASASTDSTLRLWDVKENLP   86 (179)
Q Consensus        22 ~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~   86 (179)
                      |+..|.++.|+..-..++++|           ..++|.  +..|++.|.++.|+|.  ..|++|+.|++|.+.|.+....
T Consensus       242 HTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~  321 (463)
T KOG0270|consen  242 HTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN  321 (463)
T ss_pred             chHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc
Confidence            677889999999988899998           556666  7779999999999999  8899999999999999995322


Q ss_pred             e-eeecCCCCCeEEEEEeeCCC-EEEEeccCCcEEEEEcCCC-ccccccccCCCCCCCCcccCCcceEEEEEEccC-CCe
Q 038439           87 V-RTFRGHMNEKNFVGLTVNSE-YIACGSESNEVYVYHKEIS-KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD-SPT  162 (179)
Q Consensus        87 ~-~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~  162 (179)
                      . ..++ ..+.|..++|.|... .++++..||.|+-+|+|.. +++.+..  .          |...|.++++++. ..+
T Consensus       322 s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~--A----------Hd~~ISgl~~n~~~p~~  388 (463)
T KOG0270|consen  322 SGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK--A----------HDDEISGLSVNIQTPGL  388 (463)
T ss_pred             cCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEE--e----------ccCCcceEEecCCCCcc
Confidence            2 2222 356789999999754 5778889999999999985 5554433  2          2778999999874 467


Q ss_pred             EEEEeCCCcEEEEeec
Q 038439          163 MLTANSQGTIKVLVLA  178 (179)
Q Consensus       163 l~~~~~dg~i~iwd~~  178 (179)
                      +++++.|+.+++|++.
T Consensus       389 l~t~s~d~~Vklw~~~  404 (463)
T KOG0270|consen  389 LSTASTDKVVKLWKFD  404 (463)
T ss_pred             eeeccccceEEEEeec
Confidence            8899999999999974

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=7.8e-17  Score=115.75  Aligned_cols=164  Identities=18%  Similarity=0.210  Sum_probs=130.8

Q ss_pred             CCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeCCC----------cee----eecccCceeEEEEeeC-C
Q 038439            2 AYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQST----------APC----VHGHKKAVSYVKFLSN-D   65 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~----------~~~----~~~~~~~i~~~~~~~~-~   65 (179)
                      -+|+|.-||+.++++...++ ..+.|.+++.+|.+..+.+.++.+          +..    +...++.|.++.|+|+ .
T Consensus        88 ~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~  167 (691)
T KOG2048|consen   88 LSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT  167 (691)
T ss_pred             CCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc
Confidence            47899999999999999887 567899999999985555554333          111    3345678999999999 7


Q ss_pred             eEEEecCCCcEEEEecCCCcceeeecC--------CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCC
Q 038439           66 ELASASTDSTLRLWDVKENLPVRTFRG--------HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSP  137 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~  137 (179)
                      .+++|+.||.|++||..++..+.....        ..--|+++.|-.++ .|++|...|.|++||...+..++.+...  
T Consensus       168 ~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h--  244 (691)
T KOG2048|consen  168 KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCH--  244 (691)
T ss_pred             EEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhh--
Confidence            799999999999999998876652211        22346677766554 6899999999999999999988877642  


Q ss_pred             CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          138 DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       138 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                                ...|.+++..++++++++++.|+.|..|...
T Consensus       245 ----------~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~  275 (691)
T KOG2048|consen  245 ----------DADVLALAVADNEDRVFSAGVDPKIIQYSLT  275 (691)
T ss_pred             ----------hcceeEEEEcCCCCeEEEccCCCceEEEEec
Confidence                      7789999999999999999999998887654

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=7.8e-19  Score=132.01  Aligned_cols=166  Identities=17%  Similarity=0.322  Sum_probs=133.4

Q ss_pred             CCCccEEEEEcCCceeEEee---cCCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccC--ceeEEEEe
Q 038439            1 MAYGKVKVWCTRQEASVLNI---DMKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKK--AVSYVKFL   62 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~--~i~~~~~~   62 (179)
                      ++||.|.|||+++.+.-...   ...+.|.+++|+..-+++++.+           +..+++  +..+..  .+..+.|+
T Consensus       136 a~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~Wh  215 (1049)
T KOG0307|consen  136 ADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWH  215 (1049)
T ss_pred             CCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeC
Confidence            47999999999986654444   2467899999999888888887           233344  444433  46789999


Q ss_pred             eC--CeEEEecCCC---cEEEEecCC-CcceeeecCCCCCeEEEEEeeCC-CEEEEeccCCcEEEEEcCCCccccccccC
Q 038439           63 SN--DELASASTDS---TLRLWDVKE-NLPVRTFRGHMNEKNFVGLTVNS-EYIACGSESNEVYVYHKEISKPVTWHRFS  135 (179)
Q Consensus        63 ~~--~~l~~~~~d~---~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~v~vwd~~~~~~~~~~~~~  135 (179)
                      |+  ..+++++.|.   .|.+||+|. ..+++.+.+|...|.++.|++.+ +++++++.|+.|.+|+.++++.+..+...
T Consensus       216 P~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~  295 (1049)
T KOG0307|consen  216 PDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ  295 (1049)
T ss_pred             CCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC
Confidence            99  7788877654   689999986 45677888999999999999965 88999999999999999999988776542


Q ss_pred             CCCCCCCcccCCcceEEEEEEccCCC-eEEEEeCCCcEEEEeec
Q 038439          136 SPDMDDTDEDAGSYFISAVCWKSDSP-TMLTANSQGTIKVLVLA  178 (179)
Q Consensus       136 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~  178 (179)
                                  ...+..+.|+|... .+++++-||.|.||.+.
T Consensus       296 ------------~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~  327 (1049)
T KOG0307|consen  296 ------------GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ  327 (1049)
T ss_pred             ------------CcceeeeeecCCCcchhhhheeccceeeeeee
Confidence                        67899999999554 78889999999999875

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=5.8e-18  Score=112.15  Aligned_cols=124  Identities=15%  Similarity=0.154  Sum_probs=100.2

Q ss_pred             eeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccccc
Q 038439           56 VSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF  134 (179)
Q Consensus        56 i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~  134 (179)
                      ..|+.|++. .+++.|+.||.|.|||+.+...-+.+.+|..+|.+++|+++|++|++++.|..+.+||+..+.+++.+.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf  105 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF  105 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence            678999999 9999999999999999999988888999999999999999999999999999999999999988887776


Q ss_pred             CCCCCCCC----------------------cc-c-C----------CcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          135 SSPDMDDT----------------------DE-D-A----------GSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       135 ~~~~~~~~----------------------~~-~-~----------~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      ..+...-.                      +. . |          -.....+..|.+.|+++++|...|.+.++|..+
T Consensus       106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t  184 (405)
T KOG1273|consen  106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET  184 (405)
T ss_pred             cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence            65510000                      00 0 0          001112234778899999999999999998653

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.77  E-value=4.1e-17  Score=108.57  Aligned_cols=168  Identities=15%  Similarity=0.276  Sum_probs=132.4

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe---------CCCce---e--eecccCceeEEEEeeCC
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY---------QSTAP---C--VHGHKKAVSYVKFLSND   65 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~---------~~~~~---~--~~~~~~~i~~~~~~~~~   65 (179)
                      |+|++..+||+++++++..+. |..+.+.++-+|.. .+++++         +-.+.   +  +++|+..|+++.|.-+.
T Consensus       291 SWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd  369 (481)
T KOG0300|consen  291 SWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD  369 (481)
T ss_pred             eccccceeeeeccCceeccccCcchhccccccCCcc-eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC
Confidence            579999999999999999885 88999999999987 566655         11122   2  89999999999999888


Q ss_pred             eEEEecCCCcEEEEecCC-CcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439           66 ELASASTDSTLRLWDVKE-NLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE  144 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~  144 (179)
                      .+++|+.|.+|++||++. ..++.+++ ..++++.++.+..+..|+.--.++.|++||+...+. ..+....      ..
T Consensus       370 ~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rl-aRlPrts------Rq  441 (481)
T KOG0300|consen  370 RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRL-ARLPRTS------RQ  441 (481)
T ss_pred             ceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCcc-ccCCccc------cc
Confidence            899999999999999987 45667776 467788999998888888888899999999975443 2222111      11


Q ss_pred             cCCcceEEEEEEccCC--CeEEEEeCCCcEEEEeec
Q 038439          145 DAGSYFISAVCWKSDS--PTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       145 ~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~iwd~~  178 (179)
                      + |...|.+++|..+.  .-|++++.|..+.-|.++
T Consensus       442 g-HrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in  476 (481)
T KOG0300|consen  442 G-HRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN  476 (481)
T ss_pred             c-cceeeeeeeccccCcccccccccccceeeeeEec
Confidence            2 27789999997533  347889999999999875

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1e-16  Score=118.66  Aligned_cols=172  Identities=13%  Similarity=0.198  Sum_probs=135.1

Q ss_pred             CCCccEEEEEcCCc-eeEEeec-CCCceeEEEEcCCCCeEEEEeC----------CCc--eeeecccCceeEEEEeeC-C
Q 038439            1 MAYGKVKVWCTRQE-ASVLNID-MKANICCVKYNPGSSNYIAKYQ----------STA--PCVHGHKKAVSYVKFLSN-D   65 (179)
Q Consensus         1 ~~d~~i~vwd~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~----------~~~--~~~~~~~~~i~~~~~~~~-~   65 (179)
                      +.||.|++|+.... +.-.++. +...|.+++-...  .++++..          .++  -++...+-++.+++|+.+ .
T Consensus        32 gsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~--~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~  109 (933)
T KOG1274|consen   32 GSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN--HFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGK  109 (933)
T ss_pred             cCCCceEEeecCCcccCCchhhccCceeEEEeeccc--ceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCc
Confidence            57899999998766 4444555 7778888876554  4555441          111  114455678999999999 8


Q ss_pred             eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCccc
Q 038439           66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDED  145 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  145 (179)
                      .++.||.|-.|++-+..+......+++|..+|.++.|+|+++++|+.+-||.|++||+.++.....+..-........  
T Consensus       110 ~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~--  187 (933)
T KOG1274|consen  110 MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFIL--  187 (933)
T ss_pred             EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccc--
Confidence            999999999999999999988999999999999999999999999999999999999999887766543322211110  


Q ss_pred             CCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          146 AGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       146 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                        ...+..++|+|++..++..+.|+.|++|+..
T Consensus       188 --s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~  218 (933)
T KOG1274|consen  188 --SRICTRLAWHPKGGTLAVPPVDNTVKVYSRK  218 (933)
T ss_pred             --cceeeeeeecCCCCeEEeeccCCeEEEEccC
Confidence              4467889999999999999999999999854

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=2.8e-18  Score=129.11  Aligned_cols=167  Identities=11%  Similarity=0.204  Sum_probs=126.8

Q ss_pred             CCCccEEEEEcCCc---e---eEEee-cCCCceeEEEEcCCCCeEEEEe-CCCcee---e-----------ecccCceeE
Q 038439            1 MAYGKVKVWCTRQE---A---SVLNI-DMKANICCVKYNPGSSNYIAKY-QSTAPC---V-----------HGHKKAVSY   58 (179)
Q Consensus         1 ~~d~~i~vwd~~~~---~---~~~~~-~~~~~v~~~~~~~~~~~~~~~~-~~~~~~---~-----------~~~~~~i~~   58 (179)
                      .+||.|.+||...-   .   .+.+. .|++.|..+.|++...++++.| +.++.+   +           ......|.+
T Consensus        87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~  166 (1049)
T KOG0307|consen   87 LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKC  166 (1049)
T ss_pred             ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceE
Confidence            37999999997652   2   22333 3899999999999998899998 333322   1           113457999


Q ss_pred             EEEeeC--CeEEEecCCCcEEEEecCCCcceeeecCCCC--CeEEEEEeeCC-CEEEEeccC---CcEEEEEcCCC-ccc
Q 038439           59 VKFLSN--DELASASTDSTLRLWDVKENLPVRTFRGHMN--EKNFVGLTVNS-EYIACGSES---NEVYVYHKEIS-KPV  129 (179)
Q Consensus        59 ~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~-~~~~~~~~d---~~v~vwd~~~~-~~~  129 (179)
                      ++|+..  ..|++++.++.+.|||++..+++..+..+..  .+..++|+|+. ..+++++.|   -.|.+||+|.- .++
T Consensus       167 lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~  246 (1049)
T KOG0307|consen  167 LSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL  246 (1049)
T ss_pred             eccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch
Confidence            999988  7788999999999999999888887765544  46789999985 446666654   35999999863 344


Q ss_pred             cccccCCCCCCCCcccCCcceEEEEEEccCC-CeEEEEeCCCcEEEEeecC
Q 038439          130 TWHRFSSPDMDDTDEDAGSYFISAVCWKSDS-PTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~  179 (179)
                      +.++            +|...|.++.|++.+ .+|++++.|+.|.+|+.++
T Consensus       247 k~~~------------~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t  285 (1049)
T KOG0307|consen  247 KILE------------GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT  285 (1049)
T ss_pred             hhhc------------ccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence            4432            227789999999965 8899999999999999764

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.76  E-value=2.6e-17  Score=115.99  Aligned_cols=147  Identities=19%  Similarity=0.278  Sum_probs=115.6

Q ss_pred             CCCccEEEEEcCCceeEEee-cCCCceeEEEEcCCCCeEEEEe----------CCCcee-eecccCceeEEEEeeC-CeE
Q 038439            1 MAYGKVKVWCTRQEASVLNI-DMKANICCVKYNPGSSNYIAKY----------QSTAPC-VHGHKKAVSYVKFLSN-DEL   67 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~i~~~~~~~~-~~l   67 (179)
                      |+||.|++|+-. |-...++ +...+|.|++|.|+...++.+.          ...+++ .++|.+-|.++.|++. +.+
T Consensus       123 GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI  201 (737)
T KOG1524|consen  123 GEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNII  201 (737)
T ss_pred             cCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccce
Confidence            689999999944 4333333 4678899999999988777765          334455 8899999999999999 999


Q ss_pred             EEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCC
Q 038439           68 ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAG  147 (179)
Q Consensus        68 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  147 (179)
                      ++|+.|-..++||-. |..+.+-..|..+|++++|+|+ +.++.++. ++++              +..+.         
T Consensus       202 ~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R--------------~~~p~---------  255 (737)
T KOG1524|consen  202 ASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTAR--------------FSSPR---------  255 (737)
T ss_pred             eecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeee-eeee--------------ecCCC---------
Confidence            999999999999976 5667777788999999999999 66666554 2333              11111         


Q ss_pred             cceEEEEEEccCCCeEEEEeCCCcEEE
Q 038439          148 SYFISAVCWKSDSPTMLTANSQGTIKV  174 (179)
Q Consensus       148 ~~~i~~~~~~~~~~~l~~~~~dg~i~i  174 (179)
                      .+.|..++|++||..+++|+..|.+.+
T Consensus       256 ~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  256 VGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             ccceEEEEEcCCCceeeccccCceEEE
Confidence            567999999999999999999987654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.76  E-value=2.3e-17  Score=108.14  Aligned_cols=144  Identities=16%  Similarity=0.294  Sum_probs=108.7

Q ss_pred             CCCceeEEEEcCCCCeEEEEeC----------CCc---ee----eecccCceeEEEEeeC--CeEEEecCCCcEEEEecC
Q 038439           22 MKANICCVKYNPGSSNYIAKYQ----------STA---PC----VHGHKKAVSYVKFLSN--DELASASTDSTLRLWDVK   82 (179)
Q Consensus        22 ~~~~v~~~~~~~~~~~~~~~~~----------~~~---~~----~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~   82 (179)
                      +-+.|.|+.|.|++.++++..+          ..+   .+    -.++....++-+|+|.  ...+....|++++.||++
T Consensus       122 avg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~R  201 (370)
T KOG1007|consen  122 AVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLR  201 (370)
T ss_pred             HhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEcc
Confidence            3458999999999988887761          111   11    2235667788899995  444444568999999999


Q ss_pred             CCcceeeec-CCCCCeEEEEEeeCCC-EEEEeccCCcEEEEEcCCCc-cccccccCCCCCCCCcccCCcceEEEEEEccC
Q 038439           83 ENLPVRTFR-GHMNEKNFVGLTVNSE-YIACGSESNEVYVYHKEISK-PVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD  159 (179)
Q Consensus        83 ~~~~~~~~~-~~~~~v~~~~~~~~~~-~~~~~~~d~~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  159 (179)
                      +.++...+. .|...++.+.|+|+-+ +|++|+.||.|++||.|..+ +++.+  ..          |...++++.|+|.
T Consensus       202 T~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el--~~----------HsHWvW~VRfn~~  269 (370)
T KOG1007|consen  202 TMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL--PG----------HSHWVWAVRFNPE  269 (370)
T ss_pred             chhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc--CC----------CceEEEEEEecCc
Confidence            876666554 5788899999999865 47899999999999999744 44433  22          2889999999994


Q ss_pred             -CCeEEEEeCCCcEEEEee
Q 038439          160 -SPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       160 -~~~l~~~~~dg~i~iwd~  177 (179)
                       .+++++|+.|..|.+|..
T Consensus       270 hdqLiLs~~SDs~V~Lsca  288 (370)
T KOG1007|consen  270 HDQLILSGGSDSAVNLSCA  288 (370)
T ss_pred             cceEEEecCCCceeEEEec
Confidence             567889999999999864

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=4.3e-16  Score=100.14  Aligned_cols=171  Identities=13%  Similarity=0.142  Sum_probs=123.2

Q ss_pred             CCccEEEEEcCCc----------eeEEee-cCCCceeEEEEcCCCCeEEEEeC---------------CCcee----eec
Q 038439            2 AYGKVKVWCTRQE----------ASVLNI-DMKANICCVKYNPGSSNYIAKYQ---------------STAPC----VHG   51 (179)
Q Consensus         2 ~d~~i~vwd~~~~----------~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~---------------~~~~~----~~~   51 (179)
                      .+|.|.+..+++.          ..+... .|.++|+.++|+.+  .++++|.               .-+++    ...
T Consensus        30 ~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~--~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~  107 (325)
T KOG0649|consen   30 LFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD--FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPM  107 (325)
T ss_pred             CCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh--heeeccCceEEEeeehhhhhhccchhhhhhcCcc
Confidence            5788888887641          123332 38899999999954  5777760               11111    222


Q ss_pred             cc-----CceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCC
Q 038439           52 HK-----KAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEI  125 (179)
Q Consensus        52 ~~-----~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~  125 (179)
                      |.     ..|+++...|. +-+++++.|+.+.-||+++++..+.+++|+.-+.++.-......+++|++||++++||.++
T Consensus       108 ~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt  187 (325)
T KOG0649|consen  108 QVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT  187 (325)
T ss_pred             ccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc
Confidence            22     35888988988 7788888999999999999999999999999999998855566789999999999999999


Q ss_pred             CccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          126 SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      .+.++.+....+.  .....+.+..|-+++-  +..+|++|+ ...+.+|.+++
T Consensus       188 ~k~v~~ie~yk~~--~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrs  236 (325)
T KOG0649|consen  188 QKHVSMIEPYKNP--NLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRS  236 (325)
T ss_pred             cceeEEeccccCh--hhcCcccCceeEEEec--cCceEEecC-CCceeEEeccC
Confidence            9998876654332  2222333555655554  566777665 45789998864

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.75  E-value=9.3e-16  Score=103.47  Aligned_cols=122  Identities=18%  Similarity=0.306  Sum_probs=98.6

Q ss_pred             ccEEEEEcCCceeEEeec----CCCceeEEEEcCCCCeEEEEe------------CCCcee--eecccCceeEEEEeeC-
Q 038439            4 GKVKVWCTRQEASVLNID----MKANICCVKYNPGSSNYIAKY------------QSTAPC--VHGHKKAVSYVKFLSN-   64 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~------------~~~~~~--~~~~~~~i~~~~~~~~-   64 (179)
                      ..|+|||+++.+.+.++.    +...+.++.+++.+.++..-+            .+-+++  +..|++++.+++|+++ 
T Consensus       106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G  185 (391)
T KOG2110|consen  106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDG  185 (391)
T ss_pred             ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCC
Confidence            469999999999999886    334466666666553333333            233444  8899999999999999 


Q ss_pred             CeEEEecCCCc-EEEEecCCCcceeeecCCC--CCeEEEEEeeCCCEEEEeccCCcEEEEEcCC
Q 038439           65 DELASASTDST-LRLWDVKENLPVRTFRGHM--NEKNFVGLTVNSEYIACGSESNEVYVYHKEI  125 (179)
Q Consensus        65 ~~l~~~~~d~~-v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~  125 (179)
                      .+|+|+|..|+ |||+.+.+++.+.+|+...  ..|.+++|+|++++|.+.+..++|++|.+..
T Consensus       186 ~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  186 TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            99999999986 7999999999999997543  3578999999999999999999999999875

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.75  E-value=9.5e-17  Score=106.84  Aligned_cols=148  Identities=14%  Similarity=0.152  Sum_probs=119.9

Q ss_pred             CCCceeEEEEcC----CCCeEEEEe-----------CCC--cee----eecccCceeEEEEeeC-----CeEEEecCCCc
Q 038439           22 MKANICCVKYNP----GSSNYIAKY-----------QST--APC----VHGHKKAVSYVKFLSN-----DELASASTDST   75 (179)
Q Consensus        22 ~~~~v~~~~~~~----~~~~~~~~~-----------~~~--~~~----~~~~~~~i~~~~~~~~-----~~l~~~~~d~~   75 (179)
                      |+.+|..++|++    +....+++.           ..+  +.+    -..|......++|+-+     .+++.++.-|.
T Consensus        37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~Gv  116 (385)
T KOG1034|consen   37 HNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGV  116 (385)
T ss_pred             CCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeE
Confidence            678899999985    333444443           111  111    2236677778888876     47888899999


Q ss_pred             EEEEecCCCcceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEE
Q 038439           76 LRLWDVKENLPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAV  154 (179)
Q Consensus        76 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  154 (179)
                      |+|.|+.++++...+.+|...|+.+.+.|+ .+++++++.|..|++|++++..++..+--  .       +.|...|.++
T Consensus       117 IrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG--~-------egHrdeVLSv  187 (385)
T KOG1034|consen  117 IRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG--V-------EGHRDEVLSV  187 (385)
T ss_pred             EEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc--c-------ccccCcEEEE
Confidence            999999999999999999999999999996 57899999999999999999988876532  1       2237889999


Q ss_pred             EEccCCCeEEEEeCCCcEEEEeec
Q 038439          155 CWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       155 ~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .|+++|.++++++.|..|++|+++
T Consensus       188 D~~~~gd~i~ScGmDhslk~W~l~  211 (385)
T KOG1034|consen  188 DFSLDGDRIASCGMDHSLKLWRLN  211 (385)
T ss_pred             EEcCCCCeeeccCCcceEEEEecC
Confidence            999999999999999999999986

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.75  E-value=1.5e-16  Score=113.80  Aligned_cols=171  Identities=18%  Similarity=0.277  Sum_probs=117.4

Q ss_pred             CCCccEEEEEcCCceeEEe---ecCCCceeEEEEcCCCCeEEEEe-----------------------------CCC---
Q 038439            1 MAYGKVKVWCTRQEASVLN---IDMKANICCVKYNPGSSNYIAKY-----------------------------QST---   45 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~-----------------------------~~~---   45 (179)
                      +-|.++++||+++.++...   +.|.+.|.+++|.|..+.++++|                             ..+   
T Consensus       119 sGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt  198 (720)
T KOG0321|consen  119 SGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT  198 (720)
T ss_pred             cCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence            3588999999999887654   56999999999999998999988                             011   


Q ss_pred             --cee------eecccCceeE---EEEeeC-CeEEEecC-CCcEEEEecCCCccee------e--ecCC---CCCeEEEE
Q 038439           46 --APC------VHGHKKAVSY---VKFLSN-DELASAST-DSTLRLWDVKENLPVR------T--FRGH---MNEKNFVG  101 (179)
Q Consensus        46 --~~~------~~~~~~~i~~---~~~~~~-~~l~~~~~-d~~v~iwd~~~~~~~~------~--~~~~---~~~v~~~~  101 (179)
                        +++      -.++...|.+   +.+..| ..|++++. |+.|+|||++......      .  +.-+   .-.+.++.
T Consensus       199 pskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~  278 (720)
T KOG0321|consen  199 PSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLI  278 (720)
T ss_pred             CCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEE
Confidence              111      2233334444   444556 88999888 9999999998743221      1  1112   22455566


Q ss_pred             EeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          102 LTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       102 ~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      ....|.++++.+.|+.|++|++.+...-....+.....        ...-..-..+|++.++++|+.|+..++|.+.+
T Consensus       279 lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~--------~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~  348 (720)
T KOG0321|consen  279 LDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLN--------SSFYVKSELSPDDCSLLSGSSDEQAYIWVVSS  348 (720)
T ss_pred             ecCCCCeEEEEecCCcEEEEeccccCcCchhhccCccc--------ceeeeeeecCCCCceEeccCCCcceeeeeecC
Confidence            66668998888889999999998765433333322210        22222334689999999999999999998753

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.74  E-value=4.8e-17  Score=113.87  Aligned_cols=162  Identities=10%  Similarity=0.128  Sum_probs=137.5

Q ss_pred             CCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee-eecccCceeEEEEeeC-CeEE
Q 038439            2 AYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC-VHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      .||.|.|||+.+...+..++ |.+.+.|+..+++|.++-..|          +.++.+ .......|.++.++|+ ..++
T Consensus       529 sdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWla  608 (705)
T KOG0639|consen  529 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLA  608 (705)
T ss_pred             cCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCcccee
Confidence            58999999999999999997 899999999999998888877          222332 3344678999999999 9999


Q ss_pred             EecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCc
Q 038439           69 SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGS  148 (179)
Q Consensus        69 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (179)
                      .|-.++.+.+...... ....+..|.+.|-++.|.+.|+++++.+.|+.+..|...-|..+...+-             .
T Consensus       609 vGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-------------~  674 (705)
T KOG0639|consen  609 VGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-------------S  674 (705)
T ss_pred             eecccCcEEEEecCCc-cceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc-------------c
Confidence            9999999988876643 3456667899999999999999999999999999999988877655442             6


Q ss_pred             ceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          149 YFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       149 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      ..|.++..+.|.+++++|+.|..-.||.+
T Consensus       675 SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  675 SSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             CcceeeeeccCceEEEecCCCcceEEEEE
Confidence            68999999999999999999999999876

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.74  E-value=4.3e-17  Score=117.45  Aligned_cols=148  Identities=19%  Similarity=0.240  Sum_probs=116.0

Q ss_pred             eecCCCceeEEEEcCCCCeEEEEe--------------C--CCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEE
Q 038439           19 NIDMKANICCVKYNPGSSNYIAKY--------------Q--STAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLW   79 (179)
Q Consensus        19 ~~~~~~~v~~~~~~~~~~~~~~~~--------------~--~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iw   79 (179)
                      -+.|...|++++.+|++ +++|++              +  +-..+  +.+|.-.|+.++|+|+ .+|++.|.|+++.+|
T Consensus       521 LYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~  599 (764)
T KOG1063|consen  521 LYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLY  599 (764)
T ss_pred             hccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEee
Confidence            34688999999999999 566665              1  11112  7889999999999999 999999999999999


Q ss_pred             ecCCCcc----eeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCC--ccccccccCCCCCCCCcccCCcceEEE
Q 038439           80 DVKENLP----VRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEIS--KPVTWHRFSSPDMDDTDEDAGSYFISA  153 (179)
Q Consensus        80 d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~  153 (179)
                      .......    ....+.|...|+..+|+|++.+|++++.|.+|++|.....  +.+..+.....          +..|+.
T Consensus       600 ~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~----------~~aVTA  669 (764)
T KOG1063|consen  600 EVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKF----------SLAVTA  669 (764)
T ss_pred             eeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhcc----------CCceee
Confidence            9764321    2236778999999999999999999999999999998877  33333211111          678999


Q ss_pred             EEEcc-----CCCeEEEEeCCCcEEEEee
Q 038439          154 VCWKS-----DSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       154 ~~~~~-----~~~~l~~~~~dg~i~iwd~  177 (179)
                      +++.|     .+..+++|-..|.|.+|..
T Consensus       670 v~~~~~~~~e~~~~vavGle~GeI~l~~~  698 (764)
T KOG1063|consen  670 VAYLPVDHNEKGDVVAVGLEKGEIVLWRR  698 (764)
T ss_pred             EEeeccccccccceEEEEecccEEEEEec
Confidence            99876     2337888999999999974

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=1.1e-16  Score=113.01  Aligned_cols=166  Identities=19%  Similarity=0.330  Sum_probs=130.6

Q ss_pred             CCCccEEEEEcCC--------ceeEEeec-CCCceeEEEEcCCCCeEEEEeCC-----------------Cce--e---e
Q 038439            1 MAYGKVKVWCTRQ--------EASVLNID-MKANICCVKYNPGSSNYIAKYQS-----------------TAP--C---V   49 (179)
Q Consensus         1 ~~d~~i~vwd~~~--------~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~-----------------~~~--~---~   49 (179)
                      +.||+|++|++++        -+++.++. |.++|.|+++.+.+..++..|..                 ..+  +   +
T Consensus       313 sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l  392 (577)
T KOG0642|consen  313 SEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTL  392 (577)
T ss_pred             ccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccce
Confidence            4689999999943        24566665 99999999999999888887711                 111  2   8


Q ss_pred             ecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcc------------------------------------------
Q 038439           50 HGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLP------------------------------------------   86 (179)
Q Consensus        50 ~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~------------------------------------------   86 (179)
                      .||+..++.+++++. ..|++++.||+++.|+.....+                                          
T Consensus       393 ~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~  472 (577)
T KOG0642|consen  393 LGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVV  472 (577)
T ss_pred             eccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhh
Confidence            899999999999999 8899999999999998754321                                          


Q ss_pred             --eeeecC-------CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEc
Q 038439           87 --VRTFRG-------HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWK  157 (179)
Q Consensus        87 --~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  157 (179)
                        +..+..       ....+..+.++|.+.+.+++..|+.|+++|..+++++.....            |...++++++.
T Consensus       473 s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a------------~~~svtslai~  540 (577)
T KOG0642|consen  473 SDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVA------------HKDSVTSLAID  540 (577)
T ss_pred             hheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheee------------ccceecceeec
Confidence              000100       012345577888888999999999999999999998876543            16789999999


Q ss_pred             cCCCeEEEEeCCCcEEEEeec
Q 038439          158 SDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       158 ~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      |+|.+|++++.|+.+++|.+.
T Consensus       541 ~ng~~l~s~s~d~sv~l~kld  561 (577)
T KOG0642|consen  541 PNGPYLMSGSHDGSVRLWKLD  561 (577)
T ss_pred             CCCceEEeecCCceeehhhcc
Confidence            999999999999999999863

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.74  E-value=1.1e-16  Score=106.25  Aligned_cols=147  Identities=14%  Similarity=0.231  Sum_probs=114.7

Q ss_pred             CCCceeEEEEcCCCCeEEEEeCC-------------Ccee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCC-C
Q 038439           22 MKANICCVKYNPGSSNYIAKYQS-------------TAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKE-N   84 (179)
Q Consensus        22 ~~~~v~~~~~~~~~~~~~~~~~~-------------~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~-~   84 (179)
                      ...+|+|.+|++++..+.++.++             -++.  +..|...|+.+.|+|. +.|++++.|....+|...+ +
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            46789999999999544444311             1222  7789999999999999 9999999999999999843 3


Q ss_pred             --cceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCe
Q 038439           85 --LPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPT  162 (179)
Q Consensus        85 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  162 (179)
                        ++...+..+....+++.|+|.++.|++|+....|.||-++....--.-+.-.        ......|.++.|+|++-+
T Consensus        89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhik--------kPirStv~sldWhpnnVL  160 (361)
T KOG1523|consen   89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIK--------KPIRSTVTSLDWHPNNVL  160 (361)
T ss_pred             eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhC--------CccccceeeeeccCCcce
Confidence              3444555678889999999999999999999999999887654321111100        011667999999999999


Q ss_pred             EEEEeCCCcEEEEe
Q 038439          163 MLTANSQGTIKVLV  176 (179)
Q Consensus       163 l~~~~~dg~i~iwd  176 (179)
                      |++|+.|+.++||.
T Consensus       161 laaGs~D~k~rVfS  174 (361)
T KOG1523|consen  161 LAAGSTDGKCRVFS  174 (361)
T ss_pred             ecccccCcceeEEE
Confidence            99999999999985

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.73  E-value=1.9e-15  Score=105.89  Aligned_cols=173  Identities=15%  Similarity=0.254  Sum_probs=127.2

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-----------CCCcee-eecccCceeEEEEeeC-CeE
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-----------QSTAPC-VHGHKKAVSYVKFLSN-DEL   67 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~i~~~~~~~~-~~l   67 (179)
                      |.|+.++||+  ..+++.+.....++.|+.|+|.|  .+++|           .+...+ +...+.++++++|+|+ .+|
T Consensus       387 gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~l  462 (626)
T KOG2106|consen  387 GQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFL  462 (626)
T ss_pred             cCcceEEEcc--CCceeEEEEecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEE
Confidence            5799999999  66677777788999999999998  55555           222233 3334789999999999 999


Q ss_pred             EEecCCCcEEEEecCCC-cceeee-cCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccc------------
Q 038439           68 ASASTDSTLRLWDVKEN-LPVRTF-RGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHR------------  133 (179)
Q Consensus        68 ~~~~~d~~v~iwd~~~~-~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~------------  133 (179)
                      +.|+.|+.|.+|-+... .....+ +.+.++|+.+.|++|++++.+-+.|-.|..|.....+.....+            
T Consensus       463 Avgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lG  542 (626)
T KOG2106|consen  463 AVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLG  542 (626)
T ss_pred             EEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEE
Confidence            99999999999998753 333333 2344889999999999999999999999999544322221110            


Q ss_pred             ---------------------------------------cCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEE
Q 038439          134 ---------------------------------------FSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV  174 (179)
Q Consensus       134 ---------------------------------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  174 (179)
                                                             ...+.........|+..|.+++|..+...+++.+.|..|..
T Consensus       543 F~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~q  622 (626)
T KOG2106|consen  543 FEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQ  622 (626)
T ss_pred             EEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEE
Confidence                                                   00001222233345788999999988888888779999999


Q ss_pred             Eee
Q 038439          175 LVL  177 (179)
Q Consensus       175 wd~  177 (179)
                      |++
T Consensus       623 W~l  625 (626)
T KOG2106|consen  623 WRL  625 (626)
T ss_pred             EEe
Confidence            987

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.73  E-value=1.3e-16  Score=106.15  Aligned_cols=156  Identities=21%  Similarity=0.312  Sum_probs=115.7

Q ss_pred             CCCccEEEEEc-CCceeE---Eeec-----CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeE
Q 038439            1 MAYGKVKVWCT-RQEASV---LNID-----MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSY   58 (179)
Q Consensus         1 ~~d~~i~vwd~-~~~~~~---~~~~-----~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~   58 (179)
                      |..++|+++|+ +.+..-   .++.     ..+-|.+++|+|.....+++|           ...+++  +.+|.+.|+.
T Consensus       176 GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvTh  255 (406)
T KOG2919|consen  176 GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTH  255 (406)
T ss_pred             cccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeee
Confidence            45789999998 444311   1122     356689999999988888888           445566  7899999999


Q ss_pred             EEEeeC-CeEEEecC-CCcEEEEecCC-CcceeeecCCCC-CeEE--EEEeeCCCEEEEeccCCcEEEEEcCC-Cccccc
Q 038439           59 VKFLSN-DELASAST-DSTLRLWDVKE-NLPVRTFRGHMN-EKNF--VGLTVNSEYIACGSESNEVYVYHKEI-SKPVTW  131 (179)
Q Consensus        59 ~~~~~~-~~l~~~~~-d~~v~iwd~~~-~~~~~~~~~~~~-~v~~--~~~~~~~~~~~~~~~d~~v~vwd~~~-~~~~~~  131 (179)
                      +.|.++ +.|++|+. |..|-.||++. +.++..+..|.. .-..  ....|++++|++|+.||.|++||++. +.++..
T Consensus       256 L~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv  335 (406)
T KOG2919|consen  256 LQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSV  335 (406)
T ss_pred             EEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccc
Confidence            999999 88888876 77899999986 455556655544 2233  44567899999999999999999998 554544


Q ss_pred             cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC
Q 038439          132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS  168 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  168 (179)
                      +...            +..++.++++|--.++++++.
T Consensus       336 ~~~~------------sd~vNgvslnP~mpilatssG  360 (406)
T KOG2919|consen  336 TGNY------------SDTVNGVSLNPIMPILATSSG  360 (406)
T ss_pred             cccc------------cccccceecCcccceeeeccC
Confidence            3321            667888999998776766654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.73  E-value=3.9e-16  Score=102.52  Aligned_cols=175  Identities=14%  Similarity=0.152  Sum_probs=123.3

Q ss_pred             ccEEEEEc--CCceeEE--eecCCCceeEEEEcCCCC----eEEEEe-------CC---Ccee----------eecccCc
Q 038439            4 GKVKVWCT--RQEASVL--NIDMKANICCVKYNPGSS----NYIAKY-------QS---TAPC----------VHGHKKA   55 (179)
Q Consensus         4 ~~i~vwd~--~~~~~~~--~~~~~~~v~~~~~~~~~~----~~~~~~-------~~---~~~~----------~~~~~~~   55 (179)
                      +.|.|..+  .+++.+.  .++|..+++.+.|.|+..    .++|+.       +.   ...+          -..+.++
T Consensus        73 Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aP  152 (364)
T KOG0290|consen   73 NKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAP  152 (364)
T ss_pred             CeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCc
Confidence            44555443  3344333  357889999999999862    355554       11   1111          2345678


Q ss_pred             eeEEEEeeC--CeEEEecCCCcEEEEecCCCc---ceeeecCCCCCeEEEEEeeCC-CEEEEeccCCcEEEEEcCCCccc
Q 038439           56 VSYVKFLSN--DELASASTDSTLRLWDVKENL---PVRTFRGHMNEKNFVGLTVNS-EYIACGSESNEVYVYHKEISKPV  129 (179)
Q Consensus        56 i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~v~vwd~~~~~~~  129 (179)
                      ++++.|+.-  +++.++|-|-+..|||++++.   ...++-.|..+|..++|...+ +.|++.+.||.|++||+|..+..
T Consensus       153 lTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS  232 (364)
T KOG0290|consen  153 LTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS  232 (364)
T ss_pred             ccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc
Confidence            999999876  899999999999999999863   356677899999999999865 45899999999999999865422


Q ss_pred             ccc-ccCC------------C-----------------------CCCCCcccCCcceEEEEEEcc-CCCeEEEEeCCCcE
Q 038439          130 TWH-RFSS------------P-----------------------DMDDTDEDAGSYFISAVCWKS-DSPTMLTANSQGTI  172 (179)
Q Consensus       130 ~~~-~~~~------------~-----------------------~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i  172 (179)
                      ..+ +...            .                       .........|...|+.++|.| ....|++++.|...
T Consensus       233 TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qa  312 (364)
T KOG0290|consen  233 TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQA  312 (364)
T ss_pred             eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceE
Confidence            111 1100            0                       111112223488999999999 55789999999999


Q ss_pred             EEEeec
Q 038439          173 KVLVLA  178 (179)
Q Consensus       173 ~iwd~~  178 (179)
                      .+||+.
T Consensus       313 liWDl~  318 (364)
T KOG0290|consen  313 LIWDLQ  318 (364)
T ss_pred             EEEecc
Confidence            999986

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=2e-16  Score=107.97  Aligned_cols=166  Identities=16%  Similarity=0.243  Sum_probs=119.4

Q ss_pred             CCCccEEEEEcCCceeEEee-cCCCceeEEEEcCCCCeEEEEeCC---------Ccee--e--ecccCceeEEEEeeCC-
Q 038439            1 MAYGKVKVWCTRQEASVLNI-DMKANICCVKYNPGSSNYIAKYQS---------TAPC--V--HGHKKAVSYVKFLSND-   65 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~---------~~~~--~--~~~~~~i~~~~~~~~~-   65 (179)
                      +.||++|||+.++.+.+... .|...|.++.|+|||..++..+..         +.++  .  .+....+..++|+.++ 
T Consensus       163 g~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~  242 (398)
T KOG0771|consen  163 GTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNA  242 (398)
T ss_pred             cccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcccchhhhhceecccCC
Confidence            57999999998877665544 599999999999999777777722         2222  1  1223345667777663 


Q ss_pred             ----eEEEe-cCCCcEEEEecCCCc-----ceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccC
Q 038439           66 ----ELASA-STDSTLRLWDVKENL-----PVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFS  135 (179)
Q Consensus        66 ----~l~~~-~~d~~v~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~  135 (179)
                          ++++. ..-+.|+.||+....     ...+.......|.+++.+++|++++.|+.||.|-+++..+.+.++..+  
T Consensus       243 ~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk--  320 (398)
T KOG0771|consen  243 QETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVK--  320 (398)
T ss_pred             CceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeeh--
Confidence                33332 334567777664321     112222234568999999999999999999999999999887766544  


Q ss_pred             CCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          136 SPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       136 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                               ..|...|+.+.|+|+.+++++.+.|....|..+
T Consensus       321 ---------~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  321 ---------EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL  353 (398)
T ss_pred             ---------hhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence                     223779999999999999999999988887655

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.72  E-value=2.5e-17  Score=113.99  Aligned_cols=156  Identities=10%  Similarity=0.113  Sum_probs=121.2

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-CeEEE
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-DELAS   69 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~   69 (179)
                      +.++||| ..|..++++....+|..+.|-|.. .|++++           ..++.+  +....+.+..++-+|- ..+-+
T Consensus       191 ~y~yvYD-~~GtElHClk~~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~  268 (545)
T KOG1272|consen  191 KYVYVYD-NNGTELHCLKRHIRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHL  268 (545)
T ss_pred             ceEEEec-CCCcEEeehhhcCchhhhcccchh-heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEE
Confidence            4567777 446666777777788888888887 555555           344444  5555667778888888 78889


Q ss_pred             ecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcc
Q 038439           70 ASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSY  149 (179)
Q Consensus        70 ~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (179)
                      |...|+|.+|.....+++-.+-+|.++|.++++.++|+|+++.+.|+.++|||+++...+.++..             ..
T Consensus       269 GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-------------p~  335 (545)
T KOG1272|consen  269 GHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-------------PH  335 (545)
T ss_pred             cCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-------------CC
Confidence            99999999999999999999999999999999999999999999999999999999876665543             34


Q ss_pred             eEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439          150 FISAVCWKSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       150 ~i~~~~~~~~~~~l~~~~~dg~i~iwd  176 (179)
                      ....+++|..|  +++.+....+.||.
T Consensus       336 ~a~~ls~Sqkg--lLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  336 PASNLSLSQKG--LLALSYGDHVQIWK  360 (545)
T ss_pred             Ccccccccccc--ceeeecCCeeeeeh
Confidence            56778887655  44455555788883

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.72  E-value=3.8e-17  Score=109.96  Aligned_cols=128  Identities=20%  Similarity=0.316  Sum_probs=105.3

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe------------CCCcee--eecccCceeEEEEeeC-C
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY------------QSTAPC--VHGHKKAVSYVKFLSN-D   65 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------------~~~~~~--~~~~~~~i~~~~~~~~-~   65 (179)
                      +.|+.|.|||.+++.+++.+-.+-.-+.++|+|.+ ..++++            ...+++  ..+|...|.++.|+|. .
T Consensus       207 ~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~  285 (433)
T KOG0268|consen  207 ASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQ  285 (433)
T ss_pred             ccCCceEEEecccCCccceeeeeccccceecCccc-cceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcc
Confidence            47999999999999999988888888999999966 555555            233444  7889999999999999 9


Q ss_pred             eEEEecCCCcEEEEecCCCcceeeecC-CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccc
Q 038439           66 ELASASTDSTLRLWDVKENLPVRTFRG-HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPV  129 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~  129 (179)
                      .|++||.|.+||||..+.+..-..+.. ..+.|.++.|+.|.+|+++|+.|+.|++|.....+.+
T Consensus       286 EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl  350 (433)
T KOG0268|consen  286 EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL  350 (433)
T ss_pred             hhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence            999999999999999987654333321 2356899999999999999999999999987765443

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.71  E-value=1.6e-17  Score=114.99  Aligned_cols=165  Identities=15%  Similarity=0.149  Sum_probs=140.6

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe---------CCCcee--eecccCceeEEEEeeC-CeEE
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY---------QSTAPC--VHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------~~~~~~--~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      |..|.|-.+|..++++...+.....|.++.|-.+. +++|++         +.+..+  ++.| ..|..+.|.|- -+|+
T Consensus       148 GrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHne-q~~AVAQK~y~yvYD~~GtElHClk~~-~~v~rLeFLPyHfLL~  225 (545)
T KOG1272|consen  148 GRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNE-QFFAVAQKKYVYVYDNNGTELHCLKRH-IRVARLEFLPYHFLLV  225 (545)
T ss_pred             CCccceeeeecccceeeeeeehhhhhhhhhhhcch-HHHHhhhhceEEEecCCCcEEeehhhc-Cchhhhcccchhheee
Confidence            35678889999999999999999999999998776 566665         444444  3333 45788899999 7788


Q ss_pred             EecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCc
Q 038439           69 SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGS  148 (179)
Q Consensus        69 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (179)
                      +++..|.++--|+..|+.+..+....+.+..+.-+|-+..+-+|...|+|.+|...+.+++..+..            |.
T Consensus       226 ~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLc------------H~  293 (545)
T KOG1272|consen  226 AASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILC------------HR  293 (545)
T ss_pred             ecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHh------------cC
Confidence            999999999999999999999988888888999999988999999999999999999888755432            28


Q ss_pred             ceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          149 YFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       149 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      ++|.++++.++|+++++.+.|..++|||+++
T Consensus       294 g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~  324 (545)
T KOG1272|consen  294 GPVSSIAVDRGGRYMATTGLDRKVKIWDLRN  324 (545)
T ss_pred             CCcceEEECCCCcEEeecccccceeEeeecc
Confidence            8999999999999999999999999999974

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.70  E-value=3.1e-15  Score=98.37  Aligned_cols=158  Identities=16%  Similarity=0.260  Sum_probs=116.5

Q ss_pred             CccEEEEEcCC--ceeE--Ee------ecCCCceeEEEEcCCCCeEEEEe-----------CCCce--e---eecccCce
Q 038439            3 YGKVKVWCTRQ--EASV--LN------IDMKANICCVKYNPGSSNYIAKY-----------QSTAP--C---VHGHKKAV   56 (179)
Q Consensus         3 d~~i~vwd~~~--~~~~--~~------~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~--~---~~~~~~~i   56 (179)
                      +-.++||.+..  .+..  ..      -++..++++..|+.-.++++.++           ..+..  +   +-+|.+.|
T Consensus       120 ~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV  199 (364)
T KOG0290|consen  120 SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEV  199 (364)
T ss_pred             cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcce
Confidence            45789998873  2211  11      13567899999998887887776           22211  2   77899999


Q ss_pred             eEEEEeeC--CeEEEecCCCcEEEEecCCC------------------------------------------------cc
Q 038439           57 SYVKFLSN--DELASASTDSTLRLWDVKEN------------------------------------------------LP   86 (179)
Q Consensus        57 ~~~~~~~~--~~l~~~~~d~~v~iwd~~~~------------------------------------------------~~   86 (179)
                      ..++|...  +.|++.+.||.||+||++..                                                .+
T Consensus       200 ~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tp  279 (364)
T KOG0290|consen  200 YDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTP  279 (364)
T ss_pred             eEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcc
Confidence            99999997  89999999999999999863                                                13


Q ss_pred             eeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCcc------ccccccCCCCCCCCcccCCcceEEEEEEcc-
Q 038439           87 VRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISKP------VTWHRFSSPDMDDTDEDAGSYFISAVCWKS-  158 (179)
Q Consensus        87 ~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  158 (179)
                      +..++.|.+.|+.++|.|. ...|.+++.|.++.+||+.+...      +..+..             ++.|+.+.|++ 
T Consensus       280 va~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a-------------~~EVNqi~Ws~~  346 (364)
T KOG0290|consen  280 VARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTA-------------GGEVNQIQWSSS  346 (364)
T ss_pred             eehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhc-------------cceeeeeeeccc
Confidence            4456779999999999997 56799999999999999986432      222221             67899999997 


Q ss_pred             CCCeEEEEeCCCcEEE
Q 038439          159 DSPTMLTANSQGTIKV  174 (179)
Q Consensus       159 ~~~~l~~~~~dg~i~i  174 (179)
                      .+.+++.+.. +++.+
T Consensus       347 ~~Dwiai~~~-kklei  361 (364)
T KOG0290|consen  347 QPDWIAICFG-KKLEI  361 (364)
T ss_pred             CCCEEEEEec-CeeeE
Confidence            5567766654 34443

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=6.5e-16  Score=103.28  Aligned_cols=126  Identities=18%  Similarity=0.319  Sum_probs=95.4

Q ss_pred             CCCcee--eecccCceeEEEEeeC---CeEEEecCCCcEEEEecCCCcce--eeecCCC-CCeEEEEEeeCCCEEEEecc
Q 038439           43 QSTAPC--VHGHKKAVSYVKFLSN---DELASASTDSTLRLWDVKENLPV--RTFRGHM-NEKNFVGLTVNSEYIACGSE  114 (179)
Q Consensus        43 ~~~~~~--~~~~~~~i~~~~~~~~---~~l~~~~~d~~v~iwd~~~~~~~--~~~~~~~-~~v~~~~~~~~~~~~~~~~~  114 (179)
                      .+++.+  ++++...++.++|..+   ..+.+++.||+|++||+|.....  ..+..+. .+..+++.+-+++.+++|.+
T Consensus        58 ~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE  137 (376)
T KOG1188|consen   58 GTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTE  137 (376)
T ss_pred             cchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccc
Confidence            334455  8888888999999874   77899999999999999975443  3344444 34556666667778888754


Q ss_pred             ----CCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEcc-CCCeEEEEeCCCcEEEEeec
Q 038439          115 ----SNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKS-DSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       115 ----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~  178 (179)
                          +..|.+||.|+.+.........          |...|++++|+| +.++|++|+.||-+.+||+.
T Consensus       138 ~~~s~A~v~lwDvR~~qq~l~~~~eS----------H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~  196 (376)
T KOG1188|consen  138 LTRSDASVVLWDVRSEQQLLRQLNES----------HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK  196 (376)
T ss_pred             cccCceEEEEEEeccccchhhhhhhh----------ccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence                6789999999877632222322          377899999999 56899999999999999975

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.70  E-value=2.7e-16  Score=107.09  Aligned_cols=124  Identities=17%  Similarity=0.326  Sum_probs=99.4

Q ss_pred             CCCccEEEEEcCCcee------E---Eee-cCCCceeEEEEcCCCCeEEEEe-----------C--------C-----Cc
Q 038439            1 MAYGKVKVWCTRQEAS------V---LNI-DMKANICCVKYNPGSSNYIAKY-----------Q--------S-----TA   46 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~------~---~~~-~~~~~v~~~~~~~~~~~~~~~~-----------~--------~-----~~   46 (179)
                      |-|..|++|-++..+.      +   ..+ .|+..|+.+.|+|+| .++++|           .        +     .+
T Consensus        33 G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke  111 (434)
T KOG1009|consen   33 GGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKE  111 (434)
T ss_pred             cCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc-CeeeecCCCceEEEEEecCcCCccccchhhhCcc
Confidence            4688999998765332      1   122 388999999999999 566665           1        1     10


Q ss_pred             -e-e---eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEE
Q 038439           47 -P-C---VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYV  120 (179)
Q Consensus        47 -~-~---~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~v  120 (179)
                       - +   +.+|...|..++|+|+ .++++++.|..+++||+..+..+..+..|..-+..++|.|.++++++-+.|...+.
T Consensus       112 ~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~  191 (434)
T KOG1009|consen  112 KWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEG  191 (434)
T ss_pred             ceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccce
Confidence             1 1   6678889999999999 99999999999999999999999999999999999999999999999888886666


Q ss_pred             EEcCC
Q 038439          121 YHKEI  125 (179)
Q Consensus       121 wd~~~  125 (179)
                      +.+..
T Consensus       192 ~~~~~  196 (434)
T KOG1009|consen  192 FSAKL  196 (434)
T ss_pred             eeeee
Confidence            65543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=5.2e-15  Score=99.97  Aligned_cols=153  Identities=14%  Similarity=0.251  Sum_probs=111.8

Q ss_pred             CCccEEEEEcCCceeEEeec--CCCceeEEEEcCCCCeEEEEe--------------CCCce----------e--eeccc
Q 038439            2 AYGKVKVWCTRQEASVLNID--MKANICCVKYNPGSSNYIAKY--------------QSTAP----------C--VHGHK   53 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~--------------~~~~~----------~--~~~~~   53 (179)
                      .|-.|++|+-.. ++...+.  ....|++++|-|.+..-+++|              +..++          +  ..+| 
T Consensus       118 nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-  195 (445)
T KOG2139|consen  118 NDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-  195 (445)
T ss_pred             cCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCC-
Confidence            578899999766 4444444  456799999999887777776              11111          1  3344 


Q ss_pred             CceeEEEEeeC-CeEEEecC-CCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccc
Q 038439           54 KAVSYVKFLSN-DELASAST-DSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTW  131 (179)
Q Consensus        54 ~~i~~~~~~~~-~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~  131 (179)
                      .+|+++.|.+| ..+++++. |..|+|||..++..+.......+.+.-+.|+|||.+|+.+.-|+..++|+.....-...
T Consensus       196 ~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~er  275 (445)
T KOG2139|consen  196 NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKER  275 (445)
T ss_pred             ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecc
Confidence            68999999999 88888875 66899999998876654433456788899999999999999999999996554322212


Q ss_pred             cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC
Q 038439          132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS  168 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  168 (179)
                      +...            .+.|...+|+|+|+.|+....
T Consensus       276 w~lg------------sgrvqtacWspcGsfLLf~~s  300 (445)
T KOG2139|consen  276 WILG------------SGRVQTACWSPCGSFLLFACS  300 (445)
T ss_pred             eecc------------CCceeeeeecCCCCEEEEEEc
Confidence            2221            558999999999997765543

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.69  E-value=1.8e-15  Score=104.65  Aligned_cols=122  Identities=19%  Similarity=0.220  Sum_probs=90.4

Q ss_pred             eecccCceeEEEEeeC--CeEEEecCCCcEEEEecCCC--c--ceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEE
Q 038439           49 VHGHKKAVSYVKFLSN--DELASASTDSTLRLWDVKEN--L--PVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYH  122 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd  122 (179)
                      +.-|...|..++++|.  .+|+|++.|++++|||++.-  +  +......|...|.++.|+|.+-.|++.+.|..|+|||
T Consensus       318 ~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d  397 (498)
T KOG4328|consen  318 LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD  397 (498)
T ss_pred             hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence            4457778999999999  78999999999999999862  2  2233346889999999999877799999999999999


Q ss_pred             cC----CCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          123 KE----ISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       123 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      ..    .-.+...+......      +. --......|.|+.+++++|..-..|-|+|-
T Consensus       398 ss~~sa~~~p~~~I~Hn~~t------~R-wlT~fKA~W~P~~~li~vg~~~r~IDv~~~  449 (498)
T KOG4328|consen  398 SSCISAKDEPLGTIPHNNRT------GR-WLTPFKAAWDPDYNLIVVGRYPRPIDVFDG  449 (498)
T ss_pred             cccccccCCccceeeccCcc------cc-cccchhheeCCCccEEEEeccCcceeEEcC
Confidence            84    22233333221110      00 012345679999999999999888888874

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.69  E-value=2.8e-14  Score=101.78  Aligned_cols=163  Identities=22%  Similarity=0.401  Sum_probs=127.1

Q ss_pred             CccEEEEEcCC-ceeEEee-cCCCceeEEEEcCCCCeEEEEeC-----------CCcee--eecccCceeEEEEeeC-C-
Q 038439            3 YGKVKVWCTRQ-EASVLNI-DMKANICCVKYNPGSSNYIAKYQ-----------STAPC--VHGHKKAVSYVKFLSN-D-   65 (179)
Q Consensus         3 d~~i~vwd~~~-~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~-----------~~~~~--~~~~~~~i~~~~~~~~-~-   65 (179)
                      |+.+.+|+... ......+ .|...|..++|+|++..+++.+.           ....+  +.+|...+.+++|+|+ . 
T Consensus       133 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  212 (466)
T COG2319         133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL  212 (466)
T ss_pred             CccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcce
Confidence            88999999997 5555554 58889999999999974554431           12233  6678999999999988 5 


Q ss_pred             eEEEecCCCcEEEEecCCCccee-eecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcc-ccccccCCCCCCCCc
Q 038439           66 ELASASTDSTLRLWDVKENLPVR-TFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKP-VTWHRFSSPDMDDTD  143 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~~~~  143 (179)
                      .+++++.|+.+++||...+..+. .+..|.... ...|+|++.++++++.|+.+++|+.+.... ....  ..       
T Consensus       213 ~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~-------  282 (466)
T COG2319         213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--SG-------  282 (466)
T ss_pred             EEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--ec-------
Confidence            55555999999999988777777 577777665 448999998889999999999999997665 2222  11       


Q ss_pred             ccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          144 EDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       144 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                        | ...+.++.|.|++..+++++.|+.+.+||+.
T Consensus       283 --~-~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~  314 (466)
T COG2319         283 --H-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLE  314 (466)
T ss_pred             --C-CccEEEEEECCCCCEEEEeeCCCcEEEEEcC
Confidence              1 6689999999988888888889889999875

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.69  E-value=1.2e-15  Score=111.14  Aligned_cols=166  Identities=15%  Similarity=0.164  Sum_probs=124.4

Q ss_pred             CCCccEEEEEcCCcee-EE-----eec-------CCCceeEEEEcCCCCeEEEEe--------------CCCc-----ee
Q 038439            1 MAYGKVKVWCTRQEAS-VL-----NID-------MKANICCVKYNPGSSNYIAKY--------------QSTA-----PC   48 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~-~~-----~~~-------~~~~v~~~~~~~~~~~~~~~~--------------~~~~-----~~   48 (179)
                      |.||.|..|+++.... ..     ...       ....+++++|.|..+..+++|              ....     ..
T Consensus       312 ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~  391 (555)
T KOG1587|consen  312 SSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGH  391 (555)
T ss_pred             ecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccc
Confidence            4699999998765322 11     111       224589999999887777777              1111     12


Q ss_pred             --eecccCceeEEEEeeC-CeEEEecCCCcEEEEecC-CCcceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEc
Q 038439           49 --VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVK-ENLPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHK  123 (179)
Q Consensus        49 --~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~  123 (179)
                        ...|.++|.++.++|- ..++..+.|.+|+||... ...++..+..+...+++++|||- ...|+++..||.+.+||+
T Consensus       392 ~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDL  471 (555)
T KOG1587|consen  392 STFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDL  471 (555)
T ss_pred             ccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhh
Confidence              5567889999999998 444444449999999987 67788888877778999999995 567889999999999999


Q ss_pred             CCCcc--ccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          124 EISKP--VTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       124 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .....  +......            ....+.+.|+++|+.|++|...|++++|++.
T Consensus       472 l~~~~~Pv~s~~~~------------~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  472 LQDDEEPVLSQKVC------------SPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             hccccCCccccccc------------ccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            87543  3333322            4456778899999999999999999999985

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=5.2e-15  Score=97.91  Aligned_cols=155  Identities=14%  Similarity=0.142  Sum_probs=110.6

Q ss_pred             CCCceeEEEEcCCCCeEEEEe--------C------CCcee--eecccCceeEEEEeeC---CeEEEecCCCcEEEEecC
Q 038439           22 MKANICCVKYNPGSSNYIAKY--------Q------STAPC--VHGHKKAVSYVKFLSN---DELASASTDSTLRLWDVK   82 (179)
Q Consensus        22 ~~~~v~~~~~~~~~~~~~~~~--------~------~~~~~--~~~~~~~i~~~~~~~~---~~l~~~~~d~~v~iwd~~   82 (179)
                      |++-|.++.|.+.|+++.+++        +      +-.+.  .+.|.+.|..+.|.+.   +.++++|.|+++.||.-.
T Consensus        12 h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~   91 (361)
T KOG2445|consen   12 HKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQ   91 (361)
T ss_pred             CcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeec
Confidence            677899999999997776666        1      11122  6789999999999766   678999999999999863


Q ss_pred             C---------CcceeeecCCCCCeEEEEEeeC--CCEEEEeccCCcEEEEEcCCCccccccccCC-----------C---
Q 038439           83 E---------NLPVRTFRGHMNEKNFVGLTVN--SEYIACGSESNEVYVYHKEISKPVTWHRFSS-----------P---  137 (179)
Q Consensus        83 ~---------~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~-----------~---  137 (179)
                      .         -....++....+.|..+.|.|.  |-.+++++.||.++||+....-.+..+.+..           +   
T Consensus        92 ~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~  171 (361)
T KOG2445|consen   92 EKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQP  171 (361)
T ss_pred             ccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCc
Confidence            2         1233456667889999999995  7789999999999999864321111111000           0   


Q ss_pred             ------------------------------------------CCCCCcccCCcceEEEEEEccC----CCeEEEEeCCCc
Q 038439          138 ------------------------------------------DMDDTDEDAGSYFISAVCWKSD----SPTMLTANSQGT  171 (179)
Q Consensus       138 ------------------------------------------~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~dg~  171 (179)
                                                                .......+ +..+|+.++|.|+    -..||+++.|| 
T Consensus       172 ~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d-~~dpI~di~wAPn~Gr~y~~lAvA~kDg-  249 (361)
T KOG2445|consen  172 CFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD-HTDPIRDISWAPNIGRSYHLLAVATKDG-  249 (361)
T ss_pred             ceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC-CCCcceeeeeccccCCceeeEEEeecCc-
Confidence                                                      00011122 3778999999994    35789999999 


Q ss_pred             EEEEeec
Q 038439          172 IKVLVLA  178 (179)
Q Consensus       172 i~iwd~~  178 (179)
                      |+||.+.
T Consensus       250 v~I~~v~  256 (361)
T KOG2445|consen  250 VRIFKVK  256 (361)
T ss_pred             EEEEEEe
Confidence            9999975

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.67  E-value=1.7e-16  Score=114.19  Aligned_cols=114  Identities=18%  Similarity=0.261  Sum_probs=98.2

Q ss_pred             cCceeEEEEeeC--CeEEEecCCCcEEEEecCCC-------cceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEE
Q 038439           53 KKAVSYVKFLSN--DELASASTDSTLRLWDVKEN-------LPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYH  122 (179)
Q Consensus        53 ~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd  122 (179)
                      ...|+.+.|.|-  ..|+.++.|+.|++|.+..+       .+...++.|...|+++.|+|- ...+++++.|-+|++||
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD  706 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD  706 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence            456899999997  88999999999999998753       345567789999999999995 56789999999999999


Q ss_pred             cCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          123 KEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      +++++....+.           +| ...|..++|+|+|+.+++.+.||+|++|+.+
T Consensus       707 l~~~~~~~~l~-----------gH-tdqIf~~AWSpdGr~~AtVcKDg~~rVy~Pr  750 (1012)
T KOG1445|consen  707 LANAKLYSRLV-----------GH-TDQIFGIAWSPDGRRIATVCKDGTLRVYEPR  750 (1012)
T ss_pred             hhhhhhhheec-----------cC-cCceeEEEECCCCcceeeeecCceEEEeCCC
Confidence            99988765543           22 7889999999999999999999999999865

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.67  E-value=1.1e-14  Score=106.17  Aligned_cols=163  Identities=21%  Similarity=0.356  Sum_probs=121.2

Q ss_pred             ccEEEEEcCCc-eeEEeecCCCceeEEEEcCCCCeEEEEe------------CC----Ccee---eecccCceeEEEEee
Q 038439            4 GKVKVWCTRQE-ASVLNIDMKANICCVKYNPGSSNYIAKY------------QS----TAPC---VHGHKKAVSYVKFLS   63 (179)
Q Consensus         4 ~~i~vwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~------------~~----~~~~---~~~~~~~i~~~~~~~   63 (179)
                      +.+.||++... ++...+....+|++++|+|..+.++++|            ..    ..++   ...|..+++.+.|..
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~  301 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ  301 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence            47899999876 6777788999999999999999999998            11    1122   456888999999988


Q ss_pred             C-C--eEEEecCCCcEEEEecCCCc-------------------------------------------------------
Q 038439           64 N-D--ELASASTDSTLRLWDVKENL-------------------------------------------------------   85 (179)
Q Consensus        64 ~-~--~l~~~~~d~~v~iwd~~~~~-------------------------------------------------------   85 (179)
                      + .  .++++|.||.|+.|+++.-.                                                       
T Consensus       302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~  381 (555)
T KOG1587|consen  302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT  381 (555)
T ss_pred             cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence            8 3  48899999999999875310                                                       


Q ss_pred             --c------eeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcC-CCccccccccCCCCCCCCcccCCcceEEEEEE
Q 038439           86 --P------VRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKE-ISKPVTWHRFSSPDMDDTDEDAGSYFISAVCW  156 (179)
Q Consensus        86 --~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  156 (179)
                        .      ...+..|.+.|+.+.++|-+..++..+.|..+++|... ...++..+...            ...+++++|
T Consensus       382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~------------~~~v~~vaW  449 (555)
T KOG1587|consen  382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSS------------PDYVTDVAW  449 (555)
T ss_pred             ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhc------------cceeeeeEE
Confidence              0      11233456788888888876554444448999999887 55565554431            445999999


Q ss_pred             ccCCC-eEEEEeCCCcEEEEeec
Q 038439          157 KSDSP-TMLTANSQGTIKVLVLA  178 (179)
Q Consensus       157 ~~~~~-~l~~~~~dg~i~iwd~~  178 (179)
                      ||... .++++..||.+.+|||.
T Consensus       450 SptrpavF~~~d~~G~l~iWDLl  472 (555)
T KOG1587|consen  450 SPTRPAVFATVDGDGNLDIWDLL  472 (555)
T ss_pred             cCcCceEEEEEcCCCceehhhhh
Confidence            99664 56777779999999985

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=7.8e-15  Score=105.99  Aligned_cols=156  Identities=10%  Similarity=0.111  Sum_probs=103.9

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-CCC------------cee-eecccCceeEEEEeeC-CeEE
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-QST------------APC-VHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~------------~~~-~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      ..|++||+.+++........+....++|+|+|+.++.+. ..+            +.. +..+...+....|+|+ ..++
T Consensus       228 ~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~  307 (429)
T PRK01742        228 SQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSIL  307 (429)
T ss_pred             cEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEE
Confidence            479999998876543333344456789999997776654 121            111 3345556778999999 6555


Q ss_pred             Ee-cCCCcEEEEecCCC-cceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccC
Q 038439           69 SA-STDSTLRLWDVKEN-LPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDA  146 (179)
Q Consensus        69 ~~-~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  146 (179)
                      .+ ..++..++|++... .....+ .+..  ....|+|+|++++..+.++ +.+||+.+++......             
T Consensus       308 f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~-------------  370 (429)
T PRK01742        308 FTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS-------------  370 (429)
T ss_pred             EEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC-------------
Confidence            44 46788888876532 222333 2332  4578999999998877765 5569998876542211             


Q ss_pred             CcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          147 GSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       147 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                       ......+.|+|+|++|+.++.++.+.+|++
T Consensus       371 -~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        371 -TFLDESPSISPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             -CCCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence             111245779999999999999998888875

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.66  E-value=1.7e-15  Score=98.36  Aligned_cols=117  Identities=18%  Similarity=0.228  Sum_probs=96.6

Q ss_pred             eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCC--cc--eeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEc
Q 038439           49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKEN--LP--VRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHK  123 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~  123 (179)
                      ...|..++.++.|.+. ..=++++.+..+.+|++...  .+  -....-....+..+...||++.+|+++.|+.++||..
T Consensus       201 ~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVysw  280 (323)
T KOG0322|consen  201 NASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSW  280 (323)
T ss_pred             hhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEe
Confidence            5678999999999877 66678888888899988653  11  1122223456788999999999999999999999999


Q ss_pred             CCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          124 EISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      ++.+++..+..            |+..|++++|+|+.+.+|+++.|++|.+|++
T Consensus       281 rtl~pLAVLky------------Hsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  281 RTLNPLAVLKY------------HSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ccCCchhhhhh------------hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            99999887764            2788999999999999999999999999986

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.66  E-value=1.4e-13  Score=96.54  Aligned_cols=170  Identities=8%  Similarity=0.095  Sum_probs=111.5

Q ss_pred             CCccEEEEEcCC-ce--eEEeecCCCceeEEEEcCCCCeEEEEeCCCcee----ee-----------cccCceeEEEEee
Q 038439            2 AYGKVKVWCTRQ-EA--SVLNIDMKANICCVKYNPGSSNYIAKYQSTAPC----VH-----------GHKKAVSYVKFLS   63 (179)
Q Consensus         2 ~d~~i~vwd~~~-~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~-----------~~~~~i~~~~~~~   63 (179)
                      .|+.|++||+.+ ++  .+..+...+....++++|+++.+++++.....+    +.           ........+.++|
T Consensus        10 ~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~   89 (330)
T PRK11028         10 ESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDH   89 (330)
T ss_pred             CCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECC
Confidence            589999999964 33  556666667788999999997776665111111    11           1122446788999


Q ss_pred             C-CeEEEec-CCCcEEEEecCC-Cc---ceeeecCCCCCeEEEEEeeCCCEEEEe-ccCCcEEEEEcCCCccccccccCC
Q 038439           64 N-DELASAS-TDSTLRLWDVKE-NL---PVRTFRGHMNEKNFVGLTVNSEYIACG-SESNEVYVYHKEISKPVTWHRFSS  136 (179)
Q Consensus        64 ~-~~l~~~~-~d~~v~iwd~~~-~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~d~~v~vwd~~~~~~~~~~~~~~  136 (179)
                      + +.+++++ .++.|.+|++.+ +.   .+..+. +......++++|++++++++ ..++.|.+||+.+...+.......
T Consensus        90 ~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~  168 (330)
T PRK11028         90 QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAE  168 (330)
T ss_pred             CCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCc
Confidence            9 7776665 488999999974 22   222222 23346778899999988655 456999999998743321100000


Q ss_pred             CCCCCCcccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEeec
Q 038439          137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVLA  178 (179)
Q Consensus       137 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~  178 (179)
                      ...     .. ......+.|+|++++++++.. ++.|.+|+++
T Consensus       169 ~~~-----~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~  205 (330)
T PRK11028        169 VTT-----VE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK  205 (330)
T ss_pred             eec-----CC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence            000     00 334677899999999988877 8999999985

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.65  E-value=3.5e-15  Score=101.81  Aligned_cols=145  Identities=17%  Similarity=0.284  Sum_probs=116.7

Q ss_pred             cCCCceeEEEEcCCCCeEEEEe--------------CC-C--cee-----eecccCceeEEEEeeC-CeEEEecCCCcEE
Q 038439           21 DMKANICCVKYNPGSSNYIAKY--------------QS-T--APC-----VHGHKKAVSYVKFLSN-DELASASTDSTLR   77 (179)
Q Consensus        21 ~~~~~v~~~~~~~~~~~~~~~~--------------~~-~--~~~-----~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~   77 (179)
                      ....++.++.|.++....+++|              .. +  ..+     +..|...|+++.|+|+ ..|++|+.++.|.
T Consensus        11 H~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~   90 (434)
T KOG1009|consen   11 HDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVF   90 (434)
T ss_pred             cCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEE
Confidence            3567899999999876466655              11 1  122     7889999999999999 9999999999999


Q ss_pred             EEecC--------C--------CcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCC
Q 038439           78 LWDVK--------E--------NLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDD  141 (179)
Q Consensus        78 iwd~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~  141 (179)
                      +|-..        +        ......+.+|...+..++|+|++.++++++.|+.+++||+..++......-       
T Consensus        91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~d-------  163 (434)
T KOG1009|consen   91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDD-------  163 (434)
T ss_pred             EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccc-------
Confidence            99765        2        112334567889999999999999999999999999999999988766432       


Q ss_pred             CcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          142 TDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       142 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                           |...+..++|.|-++++++-+.|...+.+.+
T Consensus       164 -----h~~yvqgvawDpl~qyv~s~s~dr~~~~~~~  194 (434)
T KOG1009|consen  164 -----HEHYVQGVAWDPLNQYVASKSSDRHPEGFSA  194 (434)
T ss_pred             -----cccccceeecchhhhhhhhhccCcccceeee
Confidence                 2778999999999999999888876666654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.65  E-value=1.5e-14  Score=104.93  Aligned_cols=162  Identities=17%  Similarity=0.255  Sum_probs=109.7

Q ss_pred             CCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeCCCcee-----------eecccCc--------------
Q 038439            2 AYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQSTAPC-----------VHGHKKA--------------   55 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~--------------   55 (179)
                      .+..+.+||++.|..++++. |++.|.+++|+.+| ..+++|...+.+           -..|+..              
T Consensus        31 Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dG-krFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~La  109 (1081)
T KOG1538|consen   31 AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLA  109 (1081)
T ss_pred             cCCEEEEEeCCCcccccccccccceEEEEEEccCC-ceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhh
Confidence            46789999999999999986 89999999999999 566666111111           1123333              


Q ss_pred             -------------------------eeEEEEeeC-CeEEEecCCCcEEEEecCCC------------cce----------
Q 038439           56 -------------------------VSYVKFLSN-DELASASTDSTLRLWDVKEN------------LPV----------   87 (179)
Q Consensus        56 -------------------------i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~------------~~~----------   87 (179)
                                               +.+.+|..| .+++.|-.+|+|.+-+-...            .++          
T Consensus       110 sCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg  189 (1081)
T KOG1538|consen  110 SCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSG  189 (1081)
T ss_pred             hcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCC
Confidence                                     344555555 66677777777765543210            000          


Q ss_pred             ------------------eeecC--------CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCC
Q 038439           88 ------------------RTFRG--------HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDD  141 (179)
Q Consensus        88 ------------------~~~~~--------~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~  141 (179)
                                        .++.+        -.-...|+.+.++|++++.|+.|+.+++|-.+ |-.+-+.  ...    
T Consensus       190 ~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTv--g~~----  262 (1081)
T KOG1538|consen  190 EGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGTV--GEQ----  262 (1081)
T ss_pred             CCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec-CeEEeec--ccc----
Confidence                              00111        11134578899999999999999999999754 3222222  111    


Q ss_pred             CcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          142 TDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       142 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                            ...|+.++..|++++++.|+.||+|-.|++
T Consensus       263 ------D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  263 ------DSWIWTVQAKPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             ------ceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence                  779999999999999999999999998886

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.64  E-value=1.3e-14  Score=101.82  Aligned_cols=119  Identities=14%  Similarity=0.287  Sum_probs=94.4

Q ss_pred             eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCC-CCCeEEEEEeeCCCE-EEEeccCCcEEEEEcCC
Q 038439           49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGH-MNEKNFVGLTVNSEY-IACGSESNEVYVYHKEI  125 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-~~~~~~d~~v~vwd~~~  125 (179)
                      +++|...|+++.|+.. .+|++++..|.|.|..+.++....+|... ...++-+.|+|..++ |.+++.+|.|.+||+..
T Consensus       117 lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g  196 (673)
T KOG4378|consen  117 LKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG  196 (673)
T ss_pred             ccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccC
Confidence            6677888888888777 88888888888888888877766677654 345678999997665 56789999999999998


Q ss_pred             CccccccccCCCCCCCCcccCCcceEEEEEEccC-CCeEEEEeCCCcEEEEeec
Q 038439          126 SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD-SPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~  178 (179)
                      ..++..+.           ..|..+...++|+|. ..+|++.+.|.+|.+||++
T Consensus       197 ~sp~~~~~-----------~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~  239 (673)
T KOG4378|consen  197 MSPIFHAS-----------EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR  239 (673)
T ss_pred             CCcccchh-----------hhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence            77776553           223788899999994 5677889999999999975

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=3.8e-15  Score=106.29  Aligned_cols=167  Identities=20%  Similarity=0.282  Sum_probs=126.6

Q ss_pred             CccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeCCC---------cee--eecccCceeEEEEeeC-CeEEE
Q 038439            3 YGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQST---------APC--VHGHKKAVSYVKFLSN-DELAS   69 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~---------~~~--~~~~~~~i~~~~~~~~-~~l~~   69 (179)
                      ...|.|+++.....+..|. .++-|.++.|+|...+++++....         +.+  +......|..++.+|. ..|+.
T Consensus       545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~  624 (733)
T KOG0650|consen  545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL  624 (733)
T ss_pred             cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence            3567777777766665563 677899999999998888876211         111  3334567899999998 88999


Q ss_pred             ecCCCcEEEEecCC-CcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCC-------CccccccccCCCCCCC
Q 038439           70 ASTDSTLRLWDVKE-NLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEI-------SKPVTWHRFSSPDMDD  141 (179)
Q Consensus        70 ~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~-------~~~~~~~~~~~~~~~~  141 (179)
                      ++.|+.++.+|+.- .++.++++.|...+++++|++.-.+|++|+.||.+.|+.-.-       ...+....+..|... 
T Consensus       625 gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~-  703 (733)
T KOG0650|consen  625 GSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKT-  703 (733)
T ss_pred             ecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceee-
Confidence            99999999999874 467788888999999999999999999999999999985321       112222223222111 


Q ss_pred             CcccCCcceEEEEEEccCCCeEEEEeCCCcEEEE
Q 038439          142 TDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVL  175 (179)
Q Consensus       142 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw  175 (179)
                           ....|..+.|+|...+|++++.||+|++|
T Consensus       704 -----~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  704 -----NDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             -----cccceEeecccCCCceEEecCCCceEEee
Confidence                 14468899999999999999999999998

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.64  E-value=2.2e-14  Score=95.45  Aligned_cols=173  Identities=11%  Similarity=0.126  Sum_probs=122.3

Q ss_pred             ccEEEEEcCCce---eEEeec-CCCceeEEEEcCCCCeEEEEe-------------CCCcee--eecccCceeEEEEeeC
Q 038439            4 GKVKVWCTRQEA---SVLNID-MKANICCVKYNPGSSNYIAKY-------------QSTAPC--VHGHKKAVSYVKFLSN   64 (179)
Q Consensus         4 ~~i~vwd~~~~~---~~~~~~-~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~--~~~~~~~i~~~~~~~~   64 (179)
                      ..|.||......   ...++. |...|+.++|+|..++++.++             ..-++.  +..++...+++.|+|.
T Consensus        32 ~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~  111 (361)
T KOG1523|consen   32 HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPK  111 (361)
T ss_pred             ceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCc
Confidence            356677655443   455554 888999999999998888888             111222  6778999999999999


Q ss_pred             -CeEEEecCCCcEEEEecCCCcce----eeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcC-----CCcccccccc
Q 038439           65 -DELASASTDSTLRLWDVKENLPV----RTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKE-----ISKPVTWHRF  134 (179)
Q Consensus        65 -~~l~~~~~d~~v~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~-----~~~~~~~~~~  134 (179)
                       +.|++||....|.||-++...--    +.-+.+.+.|.+++|+|++-++++|+.|+..+++..-     .......+.-
T Consensus       112 enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgs  191 (361)
T KOG1523|consen  112 ENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGS  191 (361)
T ss_pred             CceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCcc
Confidence             99999999999999988754221    1223457789999999999999999999999998632     1100000000


Q ss_pred             CCC--CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          135 SSP--DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       135 ~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      ..+  ....+.. ...+.+..+.|+|+|+.|+-.+.|..+.+-|-
T Consensus       192 k~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da  235 (361)
T KOG1523|consen  192 KMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA  235 (361)
T ss_pred             CCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence            000  0000000 11678999999999999999999999888663

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=1.5e-14  Score=102.86  Aligned_cols=112  Identities=19%  Similarity=0.235  Sum_probs=89.1

Q ss_pred             EEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccC
Q 038439           67 LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDA  146 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  146 (179)
                      |+.++....|.-+++..|+-+..+....+.++++..++...+|++|+.+|.|..||.++...+..+..............
T Consensus       148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~  227 (703)
T KOG2321|consen  148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDA  227 (703)
T ss_pred             EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccc
Confidence            44444455677789999999999988889999999999988999999999999999999877766655433211111111


Q ss_pred             CcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          147 GSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       147 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                       ...|+++.|+.+|-.+++|+.+|.+.||||++
T Consensus       228 -~~svTal~F~d~gL~~aVGts~G~v~iyDLRa  259 (703)
T KOG2321|consen  228 -APSVTALKFRDDGLHVAVGTSTGSVLIYDLRA  259 (703)
T ss_pred             -cCcceEEEecCCceeEEeeccCCcEEEEEccc
Confidence             44699999999999999999999999999974

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=2.6e-14  Score=103.27  Aligned_cols=160  Identities=15%  Similarity=0.071  Sum_probs=104.6

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-C------------CCcee-eecccCceeEEEEeeC-CeE
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-Q------------STAPC-VHGHKKAVSYVKFLSN-DEL   67 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~------------~~~~~-~~~~~~~i~~~~~~~~-~~l   67 (179)
                      +..|.+||...........+...+.+.+|+|+|+.++.++ .            .++.. +....+....++|+|+ ..|
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~L  262 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRL  262 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEE
Confidence            5789999987665444345777899999999998777665 1            11111 1112223446899999 777


Q ss_pred             EEe-cCCCcEEEE--ecCCCcceeeecCCCCCeEEEEEeeCCCEEEEec-cCCcEEEEEcCCCccccccccCCCCCCCCc
Q 038439           68 ASA-STDSTLRLW--DVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGS-ESNEVYVYHKEISKPVTWHRFSSPDMDDTD  143 (179)
Q Consensus        68 ~~~-~~d~~v~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~  143 (179)
                      +.+ +.++.+.||  |+.+++ ...+..+...+....|+|||+.|+..+ .++...+|++......... .. .      
T Consensus       263 a~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~-l~-~------  333 (429)
T PRK01742        263 AFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL-VG-G------  333 (429)
T ss_pred             EEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-ec-C------
Confidence            665 467766655  665554 455555666778899999999876544 5788888887543221111 11 1      


Q ss_pred             ccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          144 EDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       144 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                          ..  ....|+|+|++|+..+.++ +.+||+.
T Consensus       334 ----~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~  361 (429)
T PRK01742        334 ----RG--YSAQISADGKTLVMINGDN-VVKQDLT  361 (429)
T ss_pred             ----CC--CCccCCCCCCEEEEEcCCC-EEEEECC
Confidence                21  3578999999998887765 5568875

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=6.4e-14  Score=103.55  Aligned_cols=114  Identities=17%  Similarity=0.228  Sum_probs=95.1

Q ss_pred             cccCceeEEEEeeC-CeEEEecCCCcEEEEecCC----CcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCC
Q 038439           51 GHKKAVSYVKFLSN-DELASASTDSTLRLWDVKE----NLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEI  125 (179)
Q Consensus        51 ~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~  125 (179)
                      .|...+++.+++|+ ++++++..||.|.+|.--.    ....+.+.=|...|.+++|+++|.++++|+.++.+-+|.+.+
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            35667899999999 9999999999999996322    223445666788999999999999999999999999999999


Q ss_pred             CccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          126 SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      +++...-++             ...|..+.++||+.+.+....|+.|.+-..
T Consensus       283 ~~kqfLPRL-------------gs~I~~i~vS~ds~~~sl~~~DNqI~li~~  321 (792)
T KOG1963|consen  283 GKKQFLPRL-------------GSPILHIVVSPDSDLYSLVLEDNQIHLIKA  321 (792)
T ss_pred             CCccccccc-------------CCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence            884333233             778999999999999999999999988754

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.64  E-value=6.4e-14  Score=95.37  Aligned_cols=167  Identities=13%  Similarity=0.215  Sum_probs=130.1

Q ss_pred             CCccEEEEEcCCc----eeEEeecCCCceeEEEEcCCCCeEEEEeC-------------CCceeeeccc-----------
Q 038439            2 AYGKVKVWCTRQE----ASVLNIDMKANICCVKYNPGSSNYIAKYQ-------------STAPCVHGHK-----------   53 (179)
Q Consensus         2 ~d~~i~vwd~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~-----------   53 (179)
                      .+|.+.+|..+.+    ..+..+.....+..+.-+|..+.++++|.             ..++++.+..           
T Consensus       123 ~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVP  202 (412)
T KOG3881|consen  123 SSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVP  202 (412)
T ss_pred             cCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceee
Confidence            4688899987743    23444556677888888888888888771             1122221111           


Q ss_pred             CceeEEEEeeC---CeEEEecCCCcEEEEecCC-CcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccc
Q 038439           54 KAVSYVKFLSN---DELASASTDSTLRLWDVKE-NLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPV  129 (179)
Q Consensus        54 ~~i~~~~~~~~---~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~  129 (179)
                      -.++++.|.+.   ..|++++.-+.+|+||.+. .+++.++.-...++.++...|.++++++|..-+.+..||++.++..
T Consensus       203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~  282 (412)
T KOG3881|consen  203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL  282 (412)
T ss_pred             eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceee
Confidence            12467788776   7899999999999999986 5678888877889999999999999999999999999999998765


Q ss_pred             cccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          130 TWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      ... +...          .+.|+++..+|+++++++++-|..++|+|+.+
T Consensus       283 g~~-~kg~----------tGsirsih~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  283 GCG-LKGI----------TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             ccc-cCCc----------cCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence            442 2222          67899999999999999999999999999864

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.63  E-value=3e-15  Score=105.82  Aligned_cols=127  Identities=20%  Similarity=0.276  Sum_probs=101.7

Q ss_pred             eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCC--------CcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEE
Q 038439           49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKE--------NLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVY  119 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~  119 (179)
                      +..|...|..+.|.|. ..|++++.|+++.+|+++.        -+++.+|++|.++|-|+++.++++.+++|+.||.|+
T Consensus       290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~  369 (577)
T KOG0642|consen  290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIR  369 (577)
T ss_pred             eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceee
Confidence            5567788889999998 9999999999999999943        257889999999999999999999999999999999


Q ss_pred             EEEcCCCcc-ccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          120 VYHKEISKP-VTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       120 vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .|++....- ...+  ..........+| ...++.+++++....|++++.||++++|+..
T Consensus       370 ~w~~p~n~dp~ds~--dp~vl~~~l~Gh-tdavw~l~~s~~~~~Llscs~DgTvr~w~~~  426 (577)
T KOG0642|consen  370 CWNLPPNQDPDDSY--DPSVLSGTLLGH-TDAVWLLALSSTKDRLLSCSSDGTVRLWEPT  426 (577)
T ss_pred             eeccCCCCCccccc--Ccchhccceecc-ccceeeeeecccccceeeecCCceEEeeccC
Confidence            998763221 1111  011112223344 8899999999999999999999999999853

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.62  E-value=7.4e-15  Score=103.62  Aligned_cols=113  Identities=16%  Similarity=0.252  Sum_probs=90.5

Q ss_pred             CceeEEEEeeC--CeEEEecCCCcEEEEecCCC----------------------------cceeeecCCCCCeEEEEEe
Q 038439           54 KAVSYVKFLSN--DELASASTDSTLRLWDVKEN----------------------------LPVRTFRGHMNEKNFVGLT  103 (179)
Q Consensus        54 ~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~----------------------------~~~~~~~~~~~~v~~~~~~  103 (179)
                      ..++|++|.|.  ..++.+-.+|.+.+||....                            .++..+......|...+|+
T Consensus       220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS  299 (636)
T KOG2394|consen  220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS  299 (636)
T ss_pred             cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence            57899999998  78888889999999976321                            0111111124477889999


Q ss_pred             eCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          104 VNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       104 ~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      |||++||+.+.||.++|||..+.+.+..++-.            -+...|++|+|||++|++|++|.-|.||.+.
T Consensus       300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY------------FGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~  362 (636)
T KOG2394|consen  300 PDGKYLATVSQDGFLRIFDFDTQELLGVMKSY------------FGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE  362 (636)
T ss_pred             CCCceEEEEecCceEEEeeccHHHHHHHHHhh------------ccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence            99999999999999999999987776554321            5678999999999999999999999999875

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=2.7e-14  Score=107.92  Aligned_cols=170  Identities=14%  Similarity=0.190  Sum_probs=125.4

Q ss_pred             CCccEEEEEcCCceeEEeec--CCCceeEEEEcCCCCeEEEEe--------------CCCcee--eecccCc--eeEEEE
Q 038439            2 AYGKVKVWCTRQEASVLNID--MKANICCVKYNPGSSNYIAKY--------------QSTAPC--VHGHKKA--VSYVKF   61 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~--------------~~~~~~--~~~~~~~--i~~~~~   61 (179)
                      +-+.|+|||.....++..+.  ....|+++.-+..+..++++|              .....+  .+.|+..  |..+.+
T Consensus      1185 d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~sl 1264 (1387)
T KOG1517|consen 1185 DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSL 1264 (1387)
T ss_pred             CeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEe
Confidence            44689999999888888876  445678877766655788888              111223  7788877  999999


Q ss_pred             eeC--CeEEEecCCCcEEEEecCCCcceee--ecCC---CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccccc
Q 038439           62 LSN--DELASASTDSTLRLWDVKENLPVRT--FRGH---MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF  134 (179)
Q Consensus        62 ~~~--~~l~~~~~d~~v~iwd~~~~~~~~~--~~~~---~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~  134 (179)
                      .+.  +.|++|+.+|.|++||++.......  +..|   .+..+++..+++...+|+|+. +.|+||++... .+..+..
T Consensus      1265 q~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~-~l~~~k~ 1342 (1387)
T KOG1517|consen 1265 QRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE-QLNIIKY 1342 (1387)
T ss_pred             ecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh-hhccccc
Confidence            996  7899999999999999997422222  2222   235899999999999999998 99999998743 3433332


Q ss_pred             CCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          135 SSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ...     +.......+.+++|+|-.-.+++|+.|.+|.||...
T Consensus      1343 n~~-----F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1343 NPG-----FMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred             Ccc-----cccCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence            211     111114567999999999999999999999999753

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.62  E-value=1.1e-13  Score=89.60  Aligned_cols=108  Identities=14%  Similarity=0.242  Sum_probs=80.0

Q ss_pred             CCCceeEEEEcCCCCeEEEE-eC----------CCceeeecccCceeEEEEeeC-CeEEEecC---CCcEEEEecCCCcc
Q 038439           22 MKANICCVKYNPGSSNYIAK-YQ----------STAPCVHGHKKAVSYVKFLSN-DELASAST---DSTLRLWDVKENLP   86 (179)
Q Consensus        22 ~~~~v~~~~~~~~~~~~~~~-~~----------~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~---d~~v~iwd~~~~~~   86 (179)
                      ..++|.+++|+|+|..++++ |.          ..+++..-+...++.+.|+|+ +++++++.   .|.+.+||.++.+.
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~  137 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK  137 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE
Confidence            45679999999999887655 31          122222223567789999999 88888764   46799999998888


Q ss_pred             eeeecCCCCCeEEEEEeeCCCEEEEecc------CCcEEEEEcCCCcccccc
Q 038439           87 VRTFRGHMNEKNFVGLTVNSEYIACGSE------SNEVYVYHKEISKPVTWH  132 (179)
Q Consensus        87 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~------d~~v~vwd~~~~~~~~~~  132 (179)
                      +.+...  ..+..++|+|+|++++++..      |+.++||+.. |+.+...
T Consensus       138 i~~~~~--~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  138 ISTFEH--SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             eecccc--CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence            777653  34689999999999998764      6789999985 5555443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=9.7e-14  Score=100.52  Aligned_cols=161  Identities=12%  Similarity=0.112  Sum_probs=106.2

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-------------CCCcee-eecccCceeEEEEeeC-CeEE
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-------------QSTAPC-VHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      ..|.+||...........+...+.+.+|+|+|+.++.+.             ..++.. +....+......|+|+ +.++
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~  263 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLA  263 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEE
Confidence            468899987655555456778899999999998777665             111111 2223334457899999 6554


Q ss_pred             -EecCCC--cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc-CCc--EEEEEcCCCccccccccCCCCCCCC
Q 038439           69 -SASTDS--TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE-SNE--VYVYHKEISKPVTWHRFSSPDMDDT  142 (179)
Q Consensus        69 -~~~~d~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~~--v~vwd~~~~~~~~~~~~~~~~~~~~  142 (179)
                       +.+.++  .|.+||+.+++. ..+..+.......+|+|||++++..+. ++.  |+++|+.+++... +...       
T Consensus       264 ~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~-------  334 (433)
T PRK04922        264 LTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQ-------  334 (433)
T ss_pred             EEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecC-------
Confidence             555555  599999987764 445555555567899999998876653 444  6666776655322 2111       


Q ss_pred             cccCCcceEEEEEEccCCCeEEEEeCCC---cEEEEeec
Q 038439          143 DEDAGSYFISAVCWKSDSPTMLTANSQG---TIKVLVLA  178 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~  178 (179)
                           .......+|+|+|++++..+.++   .|.+||+.
T Consensus       335 -----g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~  368 (433)
T PRK04922        335 -----GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS  368 (433)
T ss_pred             -----CCCccCEEECCCCCEEEEEECCCCceeEEEEECC
Confidence                 22344689999999998765543   58899875

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.62  E-value=7.4e-13  Score=94.49  Aligned_cols=165  Identities=21%  Similarity=0.402  Sum_probs=124.9

Q ss_pred             CCccEEEEEcCCce-eEEeecC-C-CceeEEEE-cCCCCeEEEE-e-----------CC-Ccee--eecccCceeEEEEe
Q 038439            2 AYGKVKVWCTRQEA-SVLNIDM-K-ANICCVKY-NPGSSNYIAK-Y-----------QS-TAPC--VHGHKKAVSYVKFL   62 (179)
Q Consensus         2 ~d~~i~vwd~~~~~-~~~~~~~-~-~~v~~~~~-~~~~~~~~~~-~-----------~~-~~~~--~~~~~~~i~~~~~~   62 (179)
                      .|+.+.+|+..... ....+.. . ..+..+.+ ++++..+++. +           .. ....  +..|...|..+.|+
T Consensus        85 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  164 (466)
T COG2319          85 SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS  164 (466)
T ss_pred             CCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEEC
Confidence            48899999998876 5555543 3 36777777 7777533333 2           11 2233  77899999999999


Q ss_pred             eC-CeEEEecC-CCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCC-EEEEeccCCcEEEEEcCCCccccccccCCCCC
Q 038439           63 SN-DELASAST-DSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE-YIACGSESNEVYVYHKEISKPVTWHRFSSPDM  139 (179)
Q Consensus        63 ~~-~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~  139 (179)
                      |+ ..+++++. |+.+++|++..++.+..+..|...+.+++|+|++. .+++++.|+.+++||...+..... ....+  
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~-~~~~~--  241 (466)
T COG2319         165 PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS-TLSGH--  241 (466)
T ss_pred             CCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee-ecCCC--
Confidence            99 77888875 99999999998888888888999999999999998 555558999999998886655542 11111  


Q ss_pred             CCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          140 DDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       140 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                              .... -..|+|++..+++++.|+.+++|+++
T Consensus       242 --------~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~  271 (466)
T COG2319         242 --------SDSV-VSSFSPDGSLLASGSSDGTIRLWDLR  271 (466)
T ss_pred             --------Ccce-eEeECCCCCEEEEecCCCcEEEeeec
Confidence                    2222 22899999889999999999999975

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.62  E-value=5.7e-13  Score=88.71  Aligned_cols=124  Identities=17%  Similarity=0.308  Sum_probs=92.9

Q ss_pred             CccEEEEEcC-CceeEEeecC---CCceeEEEEcCCCCeEEEEe---------------CCCcee-eecccCceeEEEEe
Q 038439            3 YGKVKVWCTR-QEASVLNIDM---KANICCVKYNPGSSNYIAKY---------------QSTAPC-VHGHKKAVSYVKFL   62 (179)
Q Consensus         3 d~~i~vwd~~-~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~---------------~~~~~~-~~~~~~~i~~~~~~   62 (179)
                      +++|+||... +.+.++.++-   +....+++-+... .+++.-               ..+.+. +.+|...|.|++.+
T Consensus       112 ~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k-~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln  190 (346)
T KOG2111|consen  112 ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNK-SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALN  190 (346)
T ss_pred             cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCc-eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEc
Confidence            4678999887 5566666642   2333333222222 333332               222345 88999999999999


Q ss_pred             eC-CeEEEecCCCc-EEEEecCCCcceeeecCC--CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCc
Q 038439           63 SN-DELASASTDST-LRLWDVKENLPVRTFRGH--MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK  127 (179)
Q Consensus        63 ~~-~~l~~~~~d~~-v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~  127 (179)
                      -+ ..++|+|..|+ |||||..+++++..++..  ...+.+++|+|+..++++.+..|+++|+.++...
T Consensus       191 ~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  191 LQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             CCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence            99 89999999996 899999999999998753  4579999999999999999999999999988643

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=3.3e-13  Score=97.57  Aligned_cols=161  Identities=16%  Similarity=0.068  Sum_probs=104.1

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-------------CCCcee-eecccCceeEEEEeeC-CeEE
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-------------QSTAPC-VHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      ..|.++|....+......+...+.+.+|+|+|+.++.+.             ..++.. +....+.+..+.|+|+ ..|+
T Consensus       179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La  258 (429)
T PRK03629        179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA  258 (429)
T ss_pred             eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEE
Confidence            368888887666555456777899999999998776654             112111 2222333456899999 6666


Q ss_pred             Ee-cCCC--cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccC-Cc--EEEEEcCCCccccccccCCCCCCCC
Q 038439           69 SA-STDS--TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSES-NE--VYVYHKEISKPVTWHRFSSPDMDDT  142 (179)
Q Consensus        69 ~~-~~d~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d-~~--v~vwd~~~~~~~~~~~~~~~~~~~~  142 (179)
                      .. +.++  .|.+||+.+++.. .+..+...+....|+|||+.|+..+.+ +.  |.++|+.+++... +...       
T Consensus       259 ~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~-lt~~-------  329 (429)
T PRK03629        259 FALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR-ITWE-------  329 (429)
T ss_pred             EEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE-eecC-------
Confidence            43 4444  5888999877654 344444567789999999988766543 44  4455666654322 2111       


Q ss_pred             cccCCcceEEEEEEccCCCeEEEEeCC---CcEEEEeec
Q 038439          143 DEDAGSYFISAVCWKSDSPTMLTANSQ---GTIKVLVLA  178 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~  178 (179)
                           ........|+|+|++|+..+.+   ..|.+||+.
T Consensus       330 -----~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~  363 (429)
T PRK03629        330 -----GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA  363 (429)
T ss_pred             -----CCCccCEEECCCCCEEEEEEccCCCceEEEEECC
Confidence                 2234568899999998876553   357788865

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.60  E-value=9.5e-15  Score=103.31  Aligned_cols=152  Identities=13%  Similarity=0.178  Sum_probs=112.8

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeCCCcee-----------eecccCceeEEEEeeC-CeE
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQSTAPC-----------VHGHKKAVSYVKFLSN-DEL   67 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~i~~~~~~~~-~~l   67 (179)
                      ++||.+.|.+ +.++....+. |.+.+.+-.|+|+|.-++.+|..+...           +.....+|.|++|.|+ +.+
T Consensus        82 s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~v  160 (737)
T KOG1524|consen   82 SNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSI  160 (737)
T ss_pred             cCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCce
Confidence            4678888877 4455555565 888999999999999999998443222           4456778999999999 544


Q ss_pred             EEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCC
Q 038439           68 ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAG  147 (179)
Q Consensus        68 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  147 (179)
                      +.+-. +.+.|=-+.....+...+.|.+-|-+++|++....+++|++|-..++||-.. +++..-..            |
T Consensus       161 l~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~------------~  226 (737)
T KOG1524|consen  161 VFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAA------------E  226 (737)
T ss_pred             EEecC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-cccccCCh------------h
Confidence            44332 3455555555556677889999999999999999999999999999999764 33322111            2


Q ss_pred             cceEEEEEEccCCCeEEEEeC
Q 038439          148 SYFISAVCWKSDSPTMLTANS  168 (179)
Q Consensus       148 ~~~i~~~~~~~~~~~l~~~~~  168 (179)
                      ..+|++++|+|+ ..++.++.
T Consensus       227 ey~ITSva~npd-~~~~v~S~  246 (737)
T KOG1524|consen  227 EYAITSVAFNPE-KDYLLWSY  246 (737)
T ss_pred             ccceeeeeeccc-cceeeeee
Confidence            778999999999 55666654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=3.2e-13  Score=97.89  Aligned_cols=161  Identities=12%  Similarity=0.117  Sum_probs=108.3

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-------------CCCcee-eecccCceeEEEEeeC-CeEE
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-------------QSTAPC-VHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      ..|.++|...........+...+.+.+|+|+|+.++.+.             ..++.. +..+.+.+....|+|+ ..++
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la  261 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVV  261 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEE
Confidence            478888886665554456778999999999998776665             122222 3345556678899999 6554


Q ss_pred             -EecCCCc--EEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc-C--CcEEEEEcCCCccccccccCCCCCCCC
Q 038439           69 -SASTDST--LRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE-S--NEVYVYHKEISKPVTWHRFSSPDMDDT  142 (179)
Q Consensus        69 -~~~~d~~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d--~~v~vwd~~~~~~~~~~~~~~~~~~~~  142 (179)
                       +.+.++.  |.+||+.+++. ..+..+........|+|||+.++..+. +  ..|+++|+.+++.... ...       
T Consensus       262 ~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~l-t~~-------  332 (435)
T PRK05137        262 MSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRI-SFG-------  332 (435)
T ss_pred             EEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEe-ecC-------
Confidence             5555554  77778887654 455555556677899999998876653 3  3688888876544322 111       


Q ss_pred             cccCCcceEEEEEEccCCCeEEEEeCC---CcEEEEeec
Q 038439          143 DEDAGSYFISAVCWKSDSPTMLTANSQ---GTIKVLVLA  178 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~  178 (179)
                           ...+....|+|+|+.|+....+   ..|.+||+.
T Consensus       333 -----~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~  366 (435)
T PRK05137        333 -----GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD  366 (435)
T ss_pred             -----CCcccCeEECCCCCEEEEEEcCCCceEEEEEECC
Confidence                 2345667899999999876653   357777753

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=1e-14  Score=103.43  Aligned_cols=129  Identities=18%  Similarity=0.245  Sum_probs=101.2

Q ss_pred             eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeec-CCCCCeEEEEEeeC--CCEEEEeccCCcEEEEEcC
Q 038439           49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFR-GHMNEKNFVGLTVN--SEYIACGSESNEVYVYHKE  124 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~~~~~~~d~~v~vwd~~  124 (179)
                      +.+|++-|+++.|+.+ .+|++||.|-.+.|||.-..++++.+. +|...|.++.|-|.  .+.+++|..|..|+++|+.
T Consensus        46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~  125 (758)
T KOG1310|consen   46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD  125 (758)
T ss_pred             hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence            8899999999999999 999999999999999998888887764 78999999999994  6778999999999999998


Q ss_pred             CCccccccccCCCCCCCCcccCCcceEEEEEEccCC-CeEEEEeCCCcEEEEeecC
Q 038439          125 ISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDS-PTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~  179 (179)
                      ..+.-.. ... ..........|...|..++-.|++ +.+.+++.||+|+-||++.
T Consensus       126 ~~~~~~~-d~~-~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE  179 (758)
T KOG1310|consen  126 SSKEGGM-DHG-MEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE  179 (758)
T ss_pred             ccccccc-ccC-ccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence            5322100 000 000000011226678888888988 7899999999999999874

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=3e-14  Score=97.56  Aligned_cols=121  Identities=17%  Similarity=0.198  Sum_probs=94.7

Q ss_pred             eEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccC
Q 038439           57 SYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFS  135 (179)
Q Consensus        57 ~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~  135 (179)
                      .+++|+.+ ..+++++.||++|+|+..+-..+.....|...|.++.|+|||++|++-+.| ..+||+.+++..+......
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            67899999 999999999999999987777777777889999999999999999999999 8999999988544433311


Q ss_pred             CC------------C---------------C---------------CCCcccCCcceEEEEEEccCCCeEEEEeCCCcEE
Q 038439          136 SP------------D---------------M---------------DDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIK  173 (179)
Q Consensus       136 ~~------------~---------------~---------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  173 (179)
                      ..            .               .               ...........|++++.+++|++++.|+.||.|-
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence            00            0               0               0000000023688999999999999999999999


Q ss_pred             EEeec
Q 038439          174 VLVLA  178 (179)
Q Consensus       174 iwd~~  178 (179)
                      |++..
T Consensus       307 i~~~~  311 (398)
T KOG0771|consen  307 IYDAK  311 (398)
T ss_pred             EEEec
Confidence            99864

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=1e-13  Score=89.42  Aligned_cols=117  Identities=18%  Similarity=0.243  Sum_probs=87.5

Q ss_pred             eecccCceeEEEEeeCCeEEEecCCCcEEEEecCCCcc------eeeecC-------CCCCeEEEEEeeCCCEEEEeccC
Q 038439           49 VHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLP------VRTFRG-------HMNEKNFVGLTVNSEYIACGSES  115 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~------~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~d  115 (179)
                      .++|.++|..++|. +.+|++++ ||.|+=|..+....      +...+.       .-..|+++...|..+-++.++.|
T Consensus        58 eqahdgpiy~~~f~-d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD  135 (325)
T KOG0649|consen   58 EQAHDGPIYYLAFH-DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD  135 (325)
T ss_pred             ccccCCCeeeeeee-hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCC
Confidence            68999999999998 45666666 59999887654211      111111       22468889999987777777789


Q ss_pred             CcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          116 NEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       116 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      +.++-||+++|+....++           +| ...+.++.--.....+++|+.||++++||+++
T Consensus       136 ~~~y~~dlE~G~i~r~~r-----------GH-tDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt  187 (325)
T KOG0649|consen  136 GVIYQVDLEDGRIQREYR-----------GH-TDYVHSVVGRNANGQILSGAEDGTVRVWDTKT  187 (325)
T ss_pred             eEEEEEEecCCEEEEEEc-----------CC-cceeeeeeecccCcceeecCCCccEEEEeccc
Confidence            999999999998776654           22 77899988855455688999999999999875

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=6.5e-13  Score=96.05  Aligned_cols=161  Identities=12%  Similarity=0.096  Sum_probs=101.4

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-C------------CCcee-eecccCceeEEEEeeC-CeEE
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-Q------------STAPC-VHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~------------~~~~~-~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      ..|.++|...........+...+.+.+|+|+|+.++.+. .            .++.. +....+.+....|+|+ +.++
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la  255 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLA  255 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence            357777765444444445778899999999997776665 1            11111 2223344567899999 6665


Q ss_pred             -EecCCCcEEEEe--cCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc-CCcEEEEEc--CCCccccccccCCCCCCCC
Q 038439           69 -SASTDSTLRLWD--VKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE-SNEVYVYHK--EISKPVTWHRFSSPDMDDT  142 (179)
Q Consensus        69 -~~~~d~~v~iwd--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~~v~vwd~--~~~~~~~~~~~~~~~~~~~  142 (179)
                       +.+.++...+|.  +..+. ...+..+........|+|||+.++..+. ++...+|.+  .+++.. .....       
T Consensus       256 ~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~-------  326 (427)
T PRK02889        256 VALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFT-------  326 (427)
T ss_pred             EEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecC-------
Confidence             567787766665  44443 4555555555667889999998775553 456666655  343322 11111       


Q ss_pred             cccCCcceEEEEEEccCCCeEEEEeCCC---cEEEEeec
Q 038439          143 DEDAGSYFISAVCWKSDSPTMLTANSQG---TIKVLVLA  178 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~  178 (179)
                           ........|+|+|++|+..+.++   .|.+||+.
T Consensus       327 -----g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~  360 (427)
T PRK02889        327 -----GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLA  360 (427)
T ss_pred             -----CCCcCceEECCCCCEEEEEEccCCcEEEEEEECC
Confidence                 22234578999999998777654   58999875

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.57  E-value=1.8e-13  Score=102.96  Aligned_cols=161  Identities=16%  Similarity=0.154  Sum_probs=124.9

Q ss_pred             CccEEEEEcCCceeEEeecCCCce-----eEEEEcCCCCeEEEEe------------CCCcee-eecccCceeEEEEeeC
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANI-----CCVKYNPGSSNYIAKY------------QSTAPC-VHGHKKAVSYVKFLSN   64 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~~~------------~~~~~~-~~~~~~~i~~~~~~~~   64 (179)
                      ++.+-+||...+.....+.+.+.+     .-+.++++. ..+++|            ....++ +.+|.+.|..+.|+.+
T Consensus       108 ~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~d  186 (967)
T KOG0974|consen  108 RNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLD  186 (967)
T ss_pred             CceEEEEecccCceehhcCCCceEEEEeEEEEeccCcE-EEEEeccccccEEEEeccccCCcceecccCCceEEEEEccC
Confidence            567778887777776666665542     223345544 445555            344555 8899999999999999


Q ss_pred             -CeEEEecCCCcEEEEecCCCccee-eecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCC
Q 038439           65 -DELASASTDSTLRLWDVKENLPVR-TFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDT  142 (179)
Q Consensus        65 -~~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~  142 (179)
                       +++++.|+|.++|+|++.+.+... ...+|...++.+.|.|+  .+++++.|-+.++|+....+ +..+  .       
T Consensus       187 g~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~-l~~y--~-------  254 (967)
T KOG0974|consen  187 GRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ-LEVY--D-------  254 (967)
T ss_pred             CcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccce-ehhh--h-------
Confidence             999999999999999999987765 56689999999999998  89999999999999655333 2222  2       


Q ss_pred             cccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          143 DEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                        +|-...++.++..++...+++++.|+.+++|++.
T Consensus       255 --~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  255 --EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             --hhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence              2226679999999999999999999999999874

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=1.7e-14  Score=102.34  Aligned_cols=153  Identities=13%  Similarity=0.160  Sum_probs=111.5

Q ss_pred             CCCceeEEEEcCCCCeEEEEe-----------CCCcee---eecccCceeEEEEeeC---CeEEEecCCCcEEEEecCC-
Q 038439           22 MKANICCVKYNPGSSNYIAKY-----------QSTAPC---VHGHKKAVSYVKFLSN---DELASASTDSTLRLWDVKE-   83 (179)
Q Consensus        22 ~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~---~~~~~~~i~~~~~~~~---~~l~~~~~d~~v~iwd~~~-   83 (179)
                      |.+.|++++|+.+| .++++|           -..+++   -.+|.+.|.++.|.|.   ..+++|+.|..|+++|+.. 
T Consensus        49 H~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~  127 (758)
T KOG1310|consen   49 HTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSS  127 (758)
T ss_pred             ccceecceeecCCC-CEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccc
Confidence            88899999999999 566666           112222   5689999999999997   7889999999999999984 


Q ss_pred             ---------CcceeeecCCCCCeEEEEEeeCC-CEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEE
Q 038439           84 ---------NLPVRTFRGHMNEKNFVGLTVNS-EYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISA  153 (179)
Q Consensus        84 ---------~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  153 (179)
                               .+....+.+|...|..++..|++ ..+.++++||+++-+|++.......-. ..+........ .--...+
T Consensus       128 ~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~-~~~~~l~ny~~-~lielk~  205 (758)
T KOG1310|consen  128 KEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDE-DCPSILVNYNP-QLIELKC  205 (758)
T ss_pred             cccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccc-cccHHHHHhch-hhheeee
Confidence                     23445567788899999999987 778999999999999998632211100 00000000000 0234678


Q ss_pred             EEEccC-CCeEEEEeCCCcEEEEee
Q 038439          154 VCWKSD-SPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       154 ~~~~~~-~~~l~~~~~dg~i~iwd~  177 (179)
                      +..+|. ..+|++|+.|...++||.
T Consensus       206 ltisp~rp~~laVGgsdpfarLYD~  230 (758)
T KOG1310|consen  206 LTISPSRPYYLAVGGSDPFARLYDR  230 (758)
T ss_pred             eeecCCCCceEEecCCCchhhhhhh
Confidence            889985 468899999999999994

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.57  E-value=1.5e-14  Score=104.85  Aligned_cols=135  Identities=20%  Similarity=0.291  Sum_probs=109.7

Q ss_pred             ceeEEEEcCCCCeEEEEe---------CCCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecC
Q 038439           25 NICCVKYNPGSSNYIAKY---------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRG   92 (179)
Q Consensus        25 ~v~~~~~~~~~~~~~~~~---------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~   92 (179)
                      .|..++|-|||..++.++         +.+..+  +++|+..|.|++|+.+ ..+++|+.|+.|.+|...- +-+..+ .
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkY-S   91 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKY-S   91 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeee-c
Confidence            789999999998887766         455555  9999999999999999 9999999999999998653 223344 5


Q ss_pred             CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcE
Q 038439           93 HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTI  172 (179)
Q Consensus        93 ~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  172 (179)
                      |...|.|+.|+|-...+++++... .-+|........ .++.             ...+.+.+|..||++++.|-.+|+|
T Consensus        92 H~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~V~-K~ks-------------s~R~~~CsWtnDGqylalG~~nGTI  156 (1081)
T KOG1538|consen   92 HNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKSVS-KHKS-------------SSRIICCSWTNDGQYLALGMFNGTI  156 (1081)
T ss_pred             cCCeeeEeecCchHHHhhhcchhh-ccccChhhhhHH-hhhh-------------heeEEEeeecCCCcEEEEeccCceE
Confidence            888999999999999999887643 457887654333 3332             6689999999999999999999999


Q ss_pred             EEEe
Q 038439          173 KVLV  176 (179)
Q Consensus       173 ~iwd  176 (179)
                      .+-+
T Consensus       157 siRN  160 (1081)
T KOG1538|consen  157 SIRN  160 (1081)
T ss_pred             Eeec
Confidence            8754

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=1.2e-12  Score=94.62  Aligned_cols=160  Identities=8%  Similarity=0.090  Sum_probs=102.4

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-------------CCCcee-eecccCceeEEEEeeC-CeE
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-------------QSTAPC-VHGHKKAVSYVKFLSN-DEL   67 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~~~~i~~~~~~~~-~~l   67 (179)
                      +..|.+|++.+++..........+...+|+|+|+.++.+.             ..++.. +..+...+....|+|+ +.|
T Consensus       222 ~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I  301 (429)
T PRK03629        222 RSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNL  301 (429)
T ss_pred             CcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEE
Confidence            3468888988876554444555566799999998777653             111222 3333446678899999 777


Q ss_pred             EEecC-CCcEEE--EecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccC---CcEEEEEcCCCccccccccCCCCCCC
Q 038439           68 ASAST-DSTLRL--WDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSES---NEVYVYHKEISKPVTWHRFSSPDMDD  141 (179)
Q Consensus        68 ~~~~~-d~~v~i--wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d---~~v~vwd~~~~~~~~~~~~~~~~~~~  141 (179)
                      +..+. ++...+  +|+.+++. ..+...........|+|||++++..+.+   ..|.+||+.+++.... ..       
T Consensus       302 ~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~L-t~-------  372 (429)
T PRK03629        302 AYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL-TD-------  372 (429)
T ss_pred             EEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEe-CC-------
Confidence            66654 344444  46665543 3343334445678899999998765543   3588899988764322 11       


Q ss_pred             CcccCCcceEEEEEEccCCCeEEEEeCCCc---EEEEee
Q 038439          142 TDEDAGSYFISAVCWKSDSPTMLTANSQGT---IKVLVL  177 (179)
Q Consensus       142 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~---i~iwd~  177 (179)
                            ........|+|||++|+.++.++.   +.++++
T Consensus       373 ------~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~  405 (429)
T PRK03629        373 ------TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST  405 (429)
T ss_pred             ------CCCCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence                  111235779999999999888764   555554

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=5.7e-14  Score=96.22  Aligned_cols=120  Identities=15%  Similarity=0.195  Sum_probs=103.7

Q ss_pred             eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCC------CcceeeecC-CCCCeEEEEEeeCCCEEEEeccCCcEEE
Q 038439           49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKE------NLPVRTFRG-HMNEKNFVGLTVNSEYIACGSESNEVYV  120 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~------~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~d~~v~v  120 (179)
                      +.+|.+.|+++.|+.+ ++|++|+.|..+++|.+..      .+++..... |.+.|.+++|...++++++|..+++|..
T Consensus        52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~  131 (609)
T KOG4227|consen   52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK  131 (609)
T ss_pred             hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence            7789999999999999 9999999999999999854      345544433 4588999999999999999999999999


Q ss_pred             EEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          121 YHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       121 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .|+++.+.+..+.....          .+.|+.+..+|..+.+++.+.++.|.+||.+
T Consensus       132 HDiEt~qsi~V~~~~~~----------~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~R  179 (609)
T KOG4227|consen  132 HDIETKQSIYVANENNN----------RGDVYHMDQHPTDNTLIVVTRAKLVSFIDNR  179 (609)
T ss_pred             eecccceeeeeecccCc----------ccceeecccCCCCceEEEEecCceEEEEecc
Confidence            99999888766654322          6689999999999999999999999999986

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.55  E-value=5.9e-12  Score=88.34  Aligned_cols=173  Identities=9%  Similarity=0.098  Sum_probs=107.9

Q ss_pred             CCccEEEEEcCC-ce--eEEeecCCCceeEEEEcCCCCeEEEEeCCCc---------------ee-eecccCceeEEEEe
Q 038439            2 AYGKVKVWCTRQ-EA--SVLNIDMKANICCVKYNPGSSNYIAKYQSTA---------------PC-VHGHKKAVSYVKFL   62 (179)
Q Consensus         2 ~d~~i~vwd~~~-~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---------------~~-~~~~~~~i~~~~~~   62 (179)
                      .++.|.+|++.. ++  .+...........++|+|+++.++++.....               .+ ...+......+.++
T Consensus        55 ~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~  134 (330)
T PRK11028         55 PEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANID  134 (330)
T ss_pred             CCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeC
Confidence            367888999863 33  2333344556789999999977777651111               11 11122335677899


Q ss_pred             eC-CeEE-EecCCCcEEEEecCCCcceee-----ec-CCCCCeEEEEEeeCCCEEEEecc-CCcEEEEEcCC--Cccccc
Q 038439           63 SN-DELA-SASTDSTLRLWDVKENLPVRT-----FR-GHMNEKNFVGLTVNSEYIACGSE-SNEVYVYHKEI--SKPVTW  131 (179)
Q Consensus        63 ~~-~~l~-~~~~d~~v~iwd~~~~~~~~~-----~~-~~~~~v~~~~~~~~~~~~~~~~~-d~~v~vwd~~~--~~~~~~  131 (179)
                      |+ ++++ +...++.|.+||+.+...+..     .. ........+.|+|+|++++++.. ++.|.+||+..  ++....
T Consensus       135 p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~  214 (330)
T PRK11028        135 PDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECV  214 (330)
T ss_pred             CCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEE
Confidence            99 6665 455679999999976332211     11 12334678999999999988776 89999999974  222111


Q ss_pred             cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEeec
Q 038439          132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVLA  178 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~  178 (179)
                      .........    ..+......+.++|++++++++.. ++.|.+|+++
T Consensus       215 ~~~~~~p~~----~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~  258 (330)
T PRK11028        215 QTLDMMPAD----FSDTRWAADIHITPDGRHLYACDRTASLISVFSVS  258 (330)
T ss_pred             EEEecCCCc----CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEe
Confidence            111110000    000223446889999999999865 7899999874

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=2e-12  Score=93.78  Aligned_cols=161  Identities=9%  Similarity=0.096  Sum_probs=105.4

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-------------CCCcee-eecccCceeEEEEeeC-CeE
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-------------QSTAPC-VHGHKKAVSYVKFLSN-DEL   67 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~~~~i~~~~~~~~-~~l   67 (179)
                      +..|.+||+.+++........+.+...+|+|+|+.++.+.             ..++.. +..+........|+|+ ..+
T Consensus       225 ~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i  304 (435)
T PRK05137        225 RPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQI  304 (435)
T ss_pred             CCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEE
Confidence            4679999998887655445667788999999998776554             111122 3444555667899999 767


Q ss_pred             EEecC-CC--cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccC---CcEEEEEcCCCccccccccCCCCCCC
Q 038439           68 ASAST-DS--TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSES---NEVYVYHKEISKPVTWHRFSSPDMDD  141 (179)
Q Consensus        68 ~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d---~~v~vwd~~~~~~~~~~~~~~~~~~~  141 (179)
                      +..+. ++  .|.++|+..++. +.+......+....|+|+|++|+....+   ..|.+||+.++.. ..+..       
T Consensus       305 ~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-------  375 (435)
T PRK05137        305 VFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-------  375 (435)
T ss_pred             EEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-------
Confidence            66553 33  577888776543 3443334456678899999998776543   3588888765443 22211       


Q ss_pred             CcccCCcceEEEEEEccCCCeEEEEeCC------CcEEEEeec
Q 038439          142 TDEDAGSYFISAVCWKSDSPTMLTANSQ------GTIKVLVLA  178 (179)
Q Consensus       142 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~iwd~~  178 (179)
                            ...+..+.|+|||+.|+..+.+      ..+.++|+.
T Consensus       376 ------~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~  412 (435)
T PRK05137        376 ------GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT  412 (435)
T ss_pred             ------CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence                  2235668899999988775543      246666653

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.54  E-value=2.2e-13  Score=104.37  Aligned_cols=130  Identities=16%  Similarity=0.179  Sum_probs=93.9

Q ss_pred             eecccCceeEEEEeeC--CeEEEecCCCcEEEEecCCC-------cceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEE
Q 038439           49 VHGHKKAVSYVKFLSN--DELASASTDSTLRLWDVKEN-------LPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVY  119 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~  119 (179)
                      +..|...+..++.++.  .+|++||.||+|++||.++-       +...++....+.+..+.+.+.+..+|+++.||.|+
T Consensus      1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred             hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEE
Confidence            7778888888888777  89999999999999998752       22234443467788999999999999999999999


Q ss_pred             EEEcCCCc--ccc---ccccC------------------CC--------------------CCCCCcccCCcceEEEEEE
Q 038439          120 VYHKEISK--PVT---WHRFS------------------SP--------------------DMDDTDEDAGSYFISAVCW  156 (179)
Q Consensus       120 vwd~~~~~--~~~---~~~~~------------------~~--------------------~~~~~~~~~~~~~i~~~~~  156 (179)
                      +.++.-..  ...   .....                  .+                    ..-........+.|++++.
T Consensus      1124 ~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~i 1203 (1431)
T KOG1240|consen 1124 VLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVI 1203 (1431)
T ss_pred             EEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEe
Confidence            99876521  000   00000                  00                    0000000111457999999


Q ss_pred             ccCCCeEEEEeCCCcEEEEeec
Q 038439          157 KSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       157 ~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      +|.+++++.|+..|.+.+||++
T Consensus      1204 dp~~~WlviGts~G~l~lWDLR 1225 (1431)
T KOG1240|consen 1204 DPWCNWLVIGTSRGQLVLWDLR 1225 (1431)
T ss_pred             cCCceEEEEecCCceEEEEEee
Confidence            9999999999999999999986

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.53  E-value=2.7e-12  Score=91.56  Aligned_cols=162  Identities=12%  Similarity=0.157  Sum_probs=123.3

Q ss_pred             CCccEEEEEcCCceeEEeec----CCCceeEEEEc------C-------------CCCeEEEEe-----------CCCce
Q 038439            2 AYGKVKVWCTRQEASVLNID----MKANICCVKYN------P-------------GSSNYIAKY-----------QSTAP   47 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~----~~~~v~~~~~~------~-------------~~~~~~~~~-----------~~~~~   47 (179)
                      .||.+++|++.+++....+.    -.+..++..|.      |             .+...++.|           ..++.
T Consensus        13 ~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~i   92 (541)
T KOG4547|consen   13 GDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEI   92 (541)
T ss_pred             CCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecCCeE
Confidence            68999999999998877774    23445555553      2             122234444           11221


Q ss_pred             e----eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEE
Q 038439           48 C----VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYH  122 (179)
Q Consensus        48 ~----~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd  122 (179)
                      .    -.+|.++|.++.++.+ +.|.+++.|+.+..|+....+.++..++....+.+++.+|||..+++++  ++|++||
T Consensus        93 t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~  170 (541)
T KOG4547|consen   93 TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLD  170 (541)
T ss_pred             EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEE
Confidence            1    3578899999999988 9999999999999999999999999998888999999999999998887  6899999


Q ss_pred             cCCCccccccccCCCCCCCCcccCCcceEEEEEEccC-----CCeEEEEeC-CCcEEEEee
Q 038439          123 KEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD-----SPTMLTANS-QGTIKVLVL  177 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~-dg~i~iwd~  177 (179)
                      +++++.+..+.           + |.++|+++.|-.+     |.+++++.. +..+.+|-+
T Consensus       171 ~~~kevv~~ft-----------g-h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v  219 (541)
T KOG4547|consen  171 IETKEVVITFT-----------G-HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV  219 (541)
T ss_pred             ccCceEEEEec-----------C-CCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence            99999887754           2 2889999999776     666665443 445666644

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.53  E-value=4.1e-12  Score=91.80  Aligned_cols=161  Identities=14%  Similarity=0.144  Sum_probs=105.6

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-------------CCCcee-eecccCceeEEEEeeC-CeEE
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-------------QSTAPC-VHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      ..|.++|....+......+...+.+.+|+|+|+.++.+.             .+++.. +..+...+.+++|+|+ ..|+
T Consensus       170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~  249 (417)
T TIGR02800       170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLA  249 (417)
T ss_pred             ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence            357788876555544456677899999999997766554             111111 2334445667899999 6554


Q ss_pred             -EecCCC--cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc-CC--cEEEEEcCCCccccccccCCCCCCCC
Q 038439           69 -SASTDS--TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE-SN--EVYVYHKEISKPVTWHRFSSPDMDDT  142 (179)
Q Consensus        69 -~~~~d~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~--~v~vwd~~~~~~~~~~~~~~~~~~~~  142 (179)
                       +.+.++  .|.+||+.+++. ..+..+........|+|+|+.|+..+. .+  .|+++|+.+++... +...       
T Consensus       250 ~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~-------  320 (417)
T TIGR02800       250 VSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTFR-------  320 (417)
T ss_pred             EEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecC-------
Confidence             445444  588889887653 344444444556789999998876544 33  57788887665322 1111       


Q ss_pred             cccCCcceEEEEEEccCCCeEEEEeCCC---cEEEEeec
Q 038439          143 DEDAGSYFISAVCWKSDSPTMLTANSQG---TIKVLVLA  178 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~  178 (179)
                           ......+.|+|++++++.++.++   .|.+||+.
T Consensus       321 -----~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~  354 (417)
T TIGR02800       321 -----GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD  354 (417)
T ss_pred             -----CCCccCeEECCCCCEEEEEEccCCceEEEEEeCC
Confidence                 33456788999999999888775   78888865

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=4.5e-12  Score=91.91  Aligned_cols=159  Identities=9%  Similarity=0.028  Sum_probs=100.4

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-CC------------Ccee-eecccCceeEEEEeeC-CeEE
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-QS------------TAPC-VHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~------------~~~~-~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      ..|.+||+.+++........+...+.+|+|+|+.++.+. ..            ++.. +..+........|+|+ ..++
T Consensus       228 ~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~  307 (433)
T PRK04922        228 SAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIY  307 (433)
T ss_pred             cEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEE
Confidence            468999998877654444555566899999998776543 11            1111 3334344567899999 7776


Q ss_pred             Eec-CCCc--EEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCC---cEEEEEcCCCccccccccCCCCCCCC
Q 038439           69 SAS-TDST--LRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESN---EVYVYHKEISKPVTWHRFSSPDMDDT  142 (179)
Q Consensus        69 ~~~-~d~~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~---~v~vwd~~~~~~~~~~~~~~~~~~~~  142 (179)
                      ..+ .++.  |.++|+.+++.. .+..........+|+|+|++|+..+.++   .|.+||+.+++... +..        
T Consensus       308 f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt~--------  377 (433)
T PRK04922        308 FTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LTP--------  377 (433)
T ss_pred             EEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE-CCC--------
Confidence            655 3444  666677665533 3322233345689999999988664432   59999998876542 221        


Q ss_pred             cccCCcceEEEEEEccCCCeEEEEeCC---CcEEEEee
Q 038439          143 DEDAGSYFISAVCWKSDSPTMLTANSQ---GTIKVLVL  177 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~  177 (179)
                           ........|+|||++++..+.+   +.|.++++
T Consensus       378 -----~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~  410 (433)
T PRK04922        378 -----GSLDESPSFAPNGSMVLYATREGGRGVLAAVST  410 (433)
T ss_pred             -----CCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence                 1123456899999988776653   34666665

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.51  E-value=1.5e-12  Score=87.77  Aligned_cols=78  Identities=17%  Similarity=0.360  Sum_probs=67.1

Q ss_pred             eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcc-eeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCC
Q 038439           49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLP-VRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEIS  126 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~  126 (179)
                      +.+|.+.+.++.|.|. +.+++|..|..+.+||+--++- ...+.+|...|..+...+.-+.+++++.||.|.+||....
T Consensus       193 ~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  193 FNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             EcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            7789999999999999 9999999999999999875433 3455678888988888888889999999999999998643

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=1e-12  Score=90.20  Aligned_cols=147  Identities=10%  Similarity=0.126  Sum_probs=115.4

Q ss_pred             cCCCceeEEEEcCCCCeEEEEe-----------------CCCcee-eec--ccCceeEEEEeeC-CeEEEecCCCcEEEE
Q 038439           21 DMKANICCVKYNPGSSNYIAKY-----------------QSTAPC-VHG--HKKAVSYVKFLSN-DELASASTDSTLRLW   79 (179)
Q Consensus        21 ~~~~~v~~~~~~~~~~~~~~~~-----------------~~~~~~-~~~--~~~~i~~~~~~~~-~~l~~~~~d~~v~iw   79 (179)
                      .|.+.|.++.|+.++ ++++.|                 ++.+|+ +.+  |...|.|++|... .++++|..+++|.+.
T Consensus        54 ~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H  132 (609)
T KOG4227|consen   54 EHTGCINALQFSHND-RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH  132 (609)
T ss_pred             hhccccceeeeccCC-eEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence            377889999999998 555555                 455777 443  5678999999988 899999999999999


Q ss_pred             ecCCCcceeeecC--CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCc-cccccccCCCCCCCCcccCCcceEEEEEE
Q 038439           80 DVKENLPVRTFRG--HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK-PVTWHRFSSPDMDDTDEDAGSYFISAVCW  156 (179)
Q Consensus        80 d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  156 (179)
                      |+.+.+.+..+..  ..+.|+.+..+|-.+.|++.+.++.|.+||.+..+ +...+.+...          ......+-|
T Consensus       133 DiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~----------~~~F~t~~F  202 (609)
T KOG4227|consen  133 DIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANS----------GKNFYTAEF  202 (609)
T ss_pred             ecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCC----------Cccceeeee
Confidence            9999877766542  24589999999998899999999999999999765 3333322221          456788899


Q ss_pred             ccC-CCeEEEEeCCCcEEEEeec
Q 038439          157 KSD-SPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       157 ~~~-~~~l~~~~~dg~i~iwd~~  178 (179)
                      +|- ..+|++.+..+-+.+||.+
T Consensus       203 ~P~~P~Li~~~~~~~G~~~~D~R  225 (609)
T KOG4227|consen  203 HPETPALILVNSETGGPNVFDRR  225 (609)
T ss_pred             cCCCceeEEeccccCCCCceeec
Confidence            994 4677888888889999975

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.50  E-value=1.7e-14  Score=106.58  Aligned_cols=114  Identities=19%  Similarity=0.349  Sum_probs=104.4

Q ss_pred             eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCc
Q 038439           49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK  127 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~  127 (179)
                      +.+|...|.|+.|... .++++|+.|..++||...++.++..+.+|.+.++.++.+.++.++++++.|..|++|.+..+.
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~  265 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA  265 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc
Confidence            7789999999999888 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          128 PVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ++..+.           +| .+.|++++|+|-.    +.+.||++++||.+
T Consensus       266 pvsvLr-----------gh-tgavtaiafsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  266 PVSVLR-----------GH-TGAVTAIAFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             hHHHHh-----------cc-ccceeeeccCccc----cCCCCCceEecccc
Confidence            987754           22 8899999999943    78889999999965

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=6.2e-12  Score=91.00  Aligned_cols=152  Identities=9%  Similarity=0.058  Sum_probs=96.7

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-CCC------------cee-eecccCceeEEEEeeC-CeEE
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-QST------------APC-VHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~------------~~~-~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      ..|.+||+.+++........+.+.+.+|+|+|+.++.+. ..+            ... +..+........|+|+ ..++
T Consensus       220 ~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~  299 (427)
T PRK02889        220 PVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIY  299 (427)
T ss_pred             cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEE
Confidence            458999998887655444556677899999998776544 111            111 3334444567889999 6666


Q ss_pred             EecC-CCcEEEEec--CCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCC---cEEEEEcCCCccccccccCCCCCCCC
Q 038439           69 SAST-DSTLRLWDV--KENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESN---EVYVYHKEISKPVTWHRFSSPDMDDT  142 (179)
Q Consensus        69 ~~~~-d~~v~iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~---~v~vwd~~~~~~~~~~~~~~~~~~~~  142 (179)
                      ..+. ++...+|.+  ..++. ..+..........+|+|+|++++..+.++   .|.+||+.+++......         
T Consensus       300 f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~---------  369 (427)
T PRK02889        300 FTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD---------  369 (427)
T ss_pred             EEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC---------
Confidence            5553 456666654  44432 22222222334678999999988766543   59999998876443211         


Q ss_pred             cccCCcceEEEEEEccCCCeEEEEeCCC
Q 038439          143 DEDAGSYFISAVCWKSDSPTMLTANSQG  170 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg  170 (179)
                           ........|+|||+.|+..+.++
T Consensus       370 -----~~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        370 -----TTRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             -----CCCccCceECCCCCEEEEEEecC
Confidence                 11235678999999888777544

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.48  E-value=3.4e-13  Score=90.47  Aligned_cols=153  Identities=15%  Similarity=0.182  Sum_probs=107.3

Q ss_pred             CCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee-eecccCceeEEEEeeC-CeE
Q 038439            2 AYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC-VHGHKKAVSYVKFLSN-DEL   67 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~i~~~~~~~~-~~l   67 (179)
                      .|+.|.+|++...+.-..++ ...++.+++|||+|+.++.+.           .+.+.. ++--+..+..++|+|+ ++.
T Consensus        69 k~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~  148 (447)
T KOG4497|consen   69 KDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFC  148 (447)
T ss_pred             ccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCcee
Confidence            47899999999888888886 667899999999998888887           333333 3333455688999999 665


Q ss_pred             EEecCCC---cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439           68 ASASTDS---TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE  144 (179)
Q Consensus        68 ~~~~~d~---~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~  144 (179)
                      +.++.-.   .+.+.....-..+..++-.+...+.+.|+|||..++         +||---.-.+..++.          
T Consensus       149 ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~la---------Vwd~~Leykv~aYe~----------  209 (447)
T KOG4497|consen  149 AILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLA---------VWDNVLEYKVYAYER----------  209 (447)
T ss_pred             eeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEE---------Eecchhhheeeeeee----------
Confidence            5555432   233332233345566666677788899999998776         455322112212222          


Q ss_pred             cCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439          145 DAGSYFISAVCWKSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       145 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  176 (179)
                         +..+..+.|+|.+++|+.|+.|+.++|.+
T Consensus       210 ---~lG~k~v~wsP~~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  210 ---GLGLKFVEWSPCNQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             ---ccceeEEEeccccceEEeeccchhhhhhc
Confidence               45788999999999999999999998854

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=2.2e-12  Score=87.49  Aligned_cols=140  Identities=14%  Similarity=0.214  Sum_probs=99.5

Q ss_pred             CceeEEEEcCCCCeEEEEe----------CCCcee-e-ecccCceeEEEEeeC--CeEEEecCCCcEEEEecCCC----c
Q 038439           24 ANICCVKYNPGSSNYIAKY----------QSTAPC-V-HGHKKAVSYVKFLSN--DELASASTDSTLRLWDVKEN----L   85 (179)
Q Consensus        24 ~~v~~~~~~~~~~~~~~~~----------~~~~~~-~-~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~----~   85 (179)
                      ..+..++|++.-..+++.+          +...+. + ......|+|++|-|.  ..|+.|+..| |++|.....    +
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r  177 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANR  177 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccccc
Confidence            4578899998542222222          111111 2 234567999999999  6777777654 899986531    1


Q ss_pred             ----------ceeeecCCCCCeEEEEEeeCCCEEEEecc-CCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEE
Q 038439           86 ----------PVRTFRGHMNEKNFVGLTVNSEYIACGSE-SNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAV  154 (179)
Q Consensus        86 ----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  154 (179)
                                .+....+| ..|++++|++||..+++++. +..|.|||+.++..+......            .+.++-+
T Consensus       178 ~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g------------lgg~slL  244 (445)
T KOG2139|consen  178 NIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG------------LGGFSLL  244 (445)
T ss_pred             ccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccC------------CCceeeE
Confidence                      11122233 57999999999999998875 678999999998876554332            5578889


Q ss_pred             EEccCCCeEEEEeCCCcEEEEee
Q 038439          155 CWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       155 ~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      .|+||+.+|++++-|+..++|+.
T Consensus       245 kwSPdgd~lfaAt~davfrlw~e  267 (445)
T KOG2139|consen  245 KWSPDGDVLFAATCDAVFRLWQE  267 (445)
T ss_pred             EEcCCCCEEEEecccceeeeehh
Confidence            99999999999999999999954

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.47  E-value=8.7e-12  Score=94.80  Aligned_cols=170  Identities=14%  Similarity=0.200  Sum_probs=113.5

Q ss_pred             CCCccEEEEEc-CC----ceeEEeec--------CCCceeEEEEcCCCCeEEEEeCCC----------cee---eecccC
Q 038439            1 MAYGKVKVWCT-RQ----EASVLNID--------MKANICCVKYNPGSSNYIAKYQST----------APC---VHGHKK   54 (179)
Q Consensus         1 ~~d~~i~vwd~-~~----~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~~----------~~~---~~~~~~   54 (179)
                      +.||.|+||+- ..    .+.+....        ..+.-.-++|......++++|...          ..+   -.+...
T Consensus      1130 s~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t 1209 (1387)
T KOG1517|consen 1130 SSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSST 1209 (1387)
T ss_pred             ccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCc
Confidence            57999999973 22    22222221        111125577887776888888211          111   122333


Q ss_pred             ceeEEEEeeC--CeEEEecCCCcEEEEecCCCc---ceeeecCCCCC--eEEEEEeeCCC-EEEEeccCCcEEEEEcCCC
Q 038439           55 AVSYVKFLSN--DELASASTDSTLRLWDVKENL---PVRTFRGHMNE--KNFVGLTVNSE-YIACGSESNEVYVYHKEIS  126 (179)
Q Consensus        55 ~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~---~~~~~~~~~~~--v~~~~~~~~~~-~~~~~~~d~~v~vwd~~~~  126 (179)
                      .++++.-.-.  +.++.|..||.|++||.+...   .+...+.|...  |..+.+.++|- .+++|+.+|.|++||+++.
T Consensus      1210 ~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1210 LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred             cceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence            4555543322  789999999999999988643   45666777766  88899988754 4999999999999999986


Q ss_pred             ccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          127 KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ..........+.      +. ++..+++..+++...+|+|+. +.|+||++.
T Consensus      1290 ~~e~~~~iv~~~------~y-Gs~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1290 SKETFLTIVAHW------EY-GSALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred             cccccceeeecc------cc-CccceeeeeccCCCeeeecCc-ceEEEEecC
Confidence            333222222110      00 335899999999999999998 899999974

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.47  E-value=2.7e-12  Score=87.61  Aligned_cols=131  Identities=11%  Similarity=0.149  Sum_probs=104.6

Q ss_pred             ccEEEEEcCCceeEEeec----------CCCceeEEEEcCC--CCeEEEEe-----------CCCcee--eecccCceeE
Q 038439            4 GKVKVWCTRQEASVLNID----------MKANICCVKYNPG--SSNYIAKY-----------QSTAPC--VHGHKKAVSY   58 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~----------~~~~v~~~~~~~~--~~~~~~~~-----------~~~~~~--~~~~~~~i~~   58 (179)
                      +.++|||++..+++.+-.          .+-.++++.|-|.  ...++++.           ...+|+  +.--+.+|++
T Consensus       173 n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~  252 (412)
T KOG3881|consen  173 NELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISS  252 (412)
T ss_pred             cceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCccee
Confidence            568999999886655432          2334788999876  43444443           334555  5556778999


Q ss_pred             EEEeeC-CeEEEecCCCcEEEEecCCCcceee-ecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccccc
Q 038439           59 VKFLSN-DELASASTDSTLRLWDVKENLPVRT-FRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF  134 (179)
Q Consensus        59 ~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~  134 (179)
                      +...|. +++++|..-+.+..||++.++.+.. +++..+.++++..+|...++++++-|++|+|+|+++.+++.....
T Consensus       253 ~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv  330 (412)
T KOG3881|consen  253 TGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV  330 (412)
T ss_pred             eeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh
Confidence            999999 9999999999999999999887765 788889999999999999999999999999999999777766555

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=2.4e-11  Score=88.20  Aligned_cols=160  Identities=11%  Similarity=0.099  Sum_probs=102.6

Q ss_pred             cEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-CCCc-ee------------eecccCceeEEEEeeC-CeEE-
Q 038439            5 KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-QSTA-PC------------VHGHKKAVSYVKFLSN-DELA-   68 (179)
Q Consensus         5 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~-~~------------~~~~~~~i~~~~~~~~-~~l~-   68 (179)
                      .|.++|...++......+...+.+.+|+|+|+.++.+. +.+. .+            +....+.+....|+|+ ..++ 
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~  259 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF  259 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEE
Confidence            47777877665555556778899999999998777665 1111 11            2222333456899999 6665 


Q ss_pred             EecCCC--cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc-CC--cEEEEEcCCCccccccccCCCCCCCCc
Q 038439           69 SASTDS--TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE-SN--EVYVYHKEISKPVTWHRFSSPDMDDTD  143 (179)
Q Consensus        69 ~~~~d~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~--~v~vwd~~~~~~~~~~~~~~~~~~~~~  143 (179)
                      +.+.++  .|.++|+.+++. ..+..+........|+|||+.++..+. ++  .|+++|+.+++.... ...        
T Consensus       260 ~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~--------  329 (430)
T PRK00178        260 VLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFV--------  329 (430)
T ss_pred             EEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecC--------
Confidence            454454  588889987654 345445555667889999998765543 33  577778777654322 111        


Q ss_pred             ccCCcceEEEEEEccCCCeEEEEeCC-C--cEEEEeec
Q 038439          144 EDAGSYFISAVCWKSDSPTMLTANSQ-G--TIKVLVLA  178 (179)
Q Consensus       144 ~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~iwd~~  178 (179)
                          ........|+|+|++|+..+.+ +  .|.+||+.
T Consensus       330 ----~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~  363 (430)
T PRK00178        330 ----GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQ  363 (430)
T ss_pred             ----CCCccceEECCCCCEEEEEEccCCceEEEEEECC
Confidence                1123456899999999877653 3  47777764

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.46  E-value=4.9e-12  Score=83.62  Aligned_cols=121  Identities=13%  Similarity=0.130  Sum_probs=93.1

Q ss_pred             eeEEEEcCCCCeEEEEeCC---------Ccee-----eecccCceeEEEEeeC--CeEEEecCCCcEEEEecCC-Cccee
Q 038439           26 ICCVKYNPGSSNYIAKYQS---------TAPC-----VHGHKKAVSYVKFLSN--DELASASTDSTLRLWDVKE-NLPVR   88 (179)
Q Consensus        26 v~~~~~~~~~~~~~~~~~~---------~~~~-----~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~-~~~~~   88 (179)
                      ..++.|++.+..+++.-..         ...+     .+.|..+++-.+|+..  +.+.+|+.|+.+.-||++. ++.+.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            5678888888665554311         1111     6778999999999877  7899999999999999993 33333


Q ss_pred             e-ecCCCCCeEEEEEee-CCCEEEEeccCCcEEEEEcCC-CccccccccCCCCCCCCcccCCcceEEEEEEccC
Q 038439           89 T-FRGHMNEKNFVGLTV-NSEYIACGSESNEVYVYHKEI-SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD  159 (179)
Q Consensus        89 ~-~~~~~~~v~~~~~~~-~~~~~~~~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  159 (179)
                      . .+.|...|.++.-+| .+.+|++|+.|..|++||.|+ ++++.....             .+.|+.+.++|.
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-------------~GGVWRi~~~p~  264 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-------------GGGVWRIKHHPE  264 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-------------ccceEEEEecch
Confidence            2 456888899998876 588999999999999999994 777766554             678999999984

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=2.5e-12  Score=91.91  Aligned_cols=143  Identities=15%  Similarity=0.213  Sum_probs=106.3

Q ss_pred             CCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceee
Q 038439           23 KANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRT   89 (179)
Q Consensus        23 ~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~   89 (179)
                      +..-..++++.-...++.+|          ..++.+  +.-..+.++++..++. ++|++|+.+|.|..||.+....+.+
T Consensus       133 P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~  212 (703)
T KOG2321|consen  133 PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGT  212 (703)
T ss_pred             CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhhee
Confidence            34456777776555566655          344444  5555688999999999 9999999999999999998766655


Q ss_pred             ecC------CCC-----CeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEcc
Q 038439           90 FRG------HMN-----EKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKS  158 (179)
Q Consensus        90 ~~~------~~~-----~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  158 (179)
                      +..      +.+     .|+++.|+-+|-.+++|..+|.+.+||+++.+++.......           ..+|..+.|.+
T Consensus       213 l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~-----------e~pi~~l~~~~  281 (703)
T KOG2321|consen  213 LDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGY-----------ELPIKKLDWQD  281 (703)
T ss_pred             eecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCC-----------ccceeeecccc
Confidence            542      222     48999999999999999999999999999999876544321           56899999977


Q ss_pred             C--CCeEEEEeCCCcEEEEee
Q 038439          159 D--SPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       159 ~--~~~l~~~~~dg~i~iwd~  177 (179)
                      .  ++.+++ .....++|||-
T Consensus       282 ~~~q~~v~S-~Dk~~~kiWd~  301 (703)
T KOG2321|consen  282 TDQQNKVVS-MDKRILKIWDE  301 (703)
T ss_pred             cCCCceEEe-cchHHhhhccc
Confidence            5  344443 44557899984

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.45  E-value=2.9e-11  Score=87.40  Aligned_cols=152  Identities=9%  Similarity=0.038  Sum_probs=99.3

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-C------------CCcee-eecccCceeEEEEeeC-CeEE
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-Q------------STAPC-VHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~------------~~~~~-~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      ..|++||+.+++......+...+.+++|+|+++.++.+. .            .+... +..+........|+|+ ..|+
T Consensus       214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~  293 (417)
T TIGR02800       214 PEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIA  293 (417)
T ss_pred             cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEE
Confidence            478999998886655445666777899999997776654 1            11111 2233333456789999 6666


Q ss_pred             EecC-CC--cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCC---cEEEEEcCCCccccccccCCCCCCCC
Q 038439           69 SAST-DS--TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESN---EVYVYHKEISKPVTWHRFSSPDMDDT  142 (179)
Q Consensus        69 ~~~~-d~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~---~v~vwd~~~~~~~~~~~~~~~~~~~~  142 (179)
                      ..+. .+  .|.++|+.+++. ..+..+........|+|+|++++.+..++   .|.+||+.++.......         
T Consensus       294 ~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~---------  363 (417)
T TIGR02800       294 FTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD---------  363 (417)
T ss_pred             EEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC---------
Confidence            5543 33  577778776653 34443445566789999999988877765   78899988754322111         


Q ss_pred             cccCCcceEEEEEEccCCCeEEEEeCCC
Q 038439          143 DEDAGSYFISAVCWKSDSPTMLTANSQG  170 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg  170 (179)
                           ........|+|++++|+..+.++
T Consensus       364 -----~~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       364 -----TGLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             -----CCCCCCceECCCCCEEEEEEeCC
Confidence                 11123457999999888877654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=6.8e-11  Score=86.06  Aligned_cols=160  Identities=13%  Similarity=0.097  Sum_probs=98.7

Q ss_pred             cEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-CC------------Ccee-eecccCceeEEEEeeC-CeEE-
Q 038439            5 KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-QS------------TAPC-VHGHKKAVSYVKFLSN-DELA-   68 (179)
Q Consensus         5 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~------------~~~~-~~~~~~~i~~~~~~~~-~~l~-   68 (179)
                      .|.++|....+..........+.+..|+|+|+.++.+. ..            ++.. +....+......|+|+ ..|+ 
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~  278 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLAL  278 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEE
Confidence            56667766555444456777899999999998777664 11            1111 1112223346789999 6555 


Q ss_pred             EecCCCc--EEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc-CC--cEEEEEcCCCccccccccCCCCCCCCc
Q 038439           69 SASTDST--LRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE-SN--EVYVYHKEISKPVTWHRFSSPDMDDTD  143 (179)
Q Consensus        69 ~~~~d~~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~--~v~vwd~~~~~~~~~~~~~~~~~~~~~  143 (179)
                      +.+.++.  |.++|+.+++. ..+..+.......+|+|||+.++..+. ++  .|.++|+.+++.... ...        
T Consensus       279 ~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~--------  348 (448)
T PRK04792        279 VLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFE--------  348 (448)
T ss_pred             EEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecC--------
Confidence            4555664  77778877654 444445555677899999998765543 33  466677776654322 111        


Q ss_pred             ccCCcceEEEEEEccCCCeEEEEeC-CCc--EEEEeec
Q 038439          144 EDAGSYFISAVCWKSDSPTMLTANS-QGT--IKVLVLA  178 (179)
Q Consensus       144 ~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--i~iwd~~  178 (179)
                          .......+|+|+|++|+..+. ++.  |.++|+.
T Consensus       349 ----g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~  382 (448)
T PRK04792        349 ----GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLE  382 (448)
T ss_pred             ----CCCCcCeeECCCCCEEEEEEecCCceEEEEEECC
Confidence                112334689999999877655 343  4445543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=9.3e-11  Score=84.81  Aligned_cols=161  Identities=12%  Similarity=0.136  Sum_probs=98.9

Q ss_pred             cEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeC-C-----------------Ccee-ee-cccCceeEEEEeeC
Q 038439            5 KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQ-S-----------------TAPC-VH-GHKKAVSYVKFLSN   64 (179)
Q Consensus         5 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~-----------------~~~~-~~-~~~~~i~~~~~~~~   64 (179)
                      .|.+.++.+++........+.....+|+|||+.++.+.. .                 +++. +. ..........|+|+
T Consensus       212 ~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPD  291 (428)
T PRK01029        212 KIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPD  291 (428)
T ss_pred             eEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCC
Confidence            456667766665444445556677899999987776551 1                 1111 11 11223456799999


Q ss_pred             -CeEEEec-CCCcEEEE--ecCC-CcceeeecCCCCCeEEEEEeeCCCEEEEeccC---CcEEEEEcCCCccccccccCC
Q 038439           65 -DELASAS-TDSTLRLW--DVKE-NLPVRTFRGHMNEKNFVGLTVNSEYIACGSES---NEVYVYHKEISKPVTWHRFSS  136 (179)
Q Consensus        65 -~~l~~~~-~d~~v~iw--d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d---~~v~vwd~~~~~~~~~~~~~~  136 (179)
                       ..|+..+ .++...+|  ++.. +.....+......+....|+|||+.|+....+   ..|.+||+.+++.......  
T Consensus       292 G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~--  369 (428)
T PRK01029        292 GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS--  369 (428)
T ss_pred             CCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC--
Confidence             6666554 46655555  4432 22334444444556788999999988765443   4689999988865432211  


Q ss_pred             CCCCCCcccCCcceEEEEEEccCCCeEEEEeC---CCcEEEEeec
Q 038439          137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANS---QGTIKVLVLA  178 (179)
Q Consensus       137 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~  178 (179)
                                 ...+....|+|||+.|+....   ...|.++|+.
T Consensus       370 -----------~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~  403 (428)
T PRK01029        370 -----------PENKESPSWAIDSLHLVYSAGNSNESELYLISLI  403 (428)
T ss_pred             -----------CCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence                       223566889999998875443   3457777764

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=1.1e-10  Score=83.18  Aligned_cols=157  Identities=16%  Similarity=0.238  Sum_probs=107.7

Q ss_pred             ccEEEEEcCCceeEEeec----CCCceeEEEEcCCCCeEEEEe-----CCC------cee----eec--------ccCce
Q 038439            4 GKVKVWCTRQEASVLNID----MKANICCVKYNPGSSNYIAKY-----QST------APC----VHG--------HKKAV   56 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~-----~~~------~~~----~~~--------~~~~i   56 (179)
                      +.|+||.......-..+.    ....=..+.|++-|.-+++..     .++      +.+    +.+        ..++|
T Consensus       194 a~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPV  273 (566)
T KOG2315|consen  194 ASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPV  273 (566)
T ss_pred             cEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCc
Confidence            457777665322211111    223345688998887776665     110      111    222        36899


Q ss_pred             eEEEEeeC-CeEE--EecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc---CCcEEEEEcCCCcccc
Q 038439           57 SYVKFLSN-DELA--SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE---SNEVYVYHKEISKPVT  130 (179)
Q Consensus        57 ~~~~~~~~-~~l~--~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---d~~v~vwd~~~~~~~~  130 (179)
                      .++.|+|+ ..++  .|-+-..+.|||++ +.++..+  ..++=+++-|+|.|++++.++-   .|.+.+||+.+.+.+.
T Consensus       274 hdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~  350 (566)
T KOG2315|consen  274 HDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIA  350 (566)
T ss_pred             eEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcc
Confidence            99999999 5544  45567789999987 5566555  3555678999999999887655   5889999999977776


Q ss_pred             ccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC------CCcEEEEee
Q 038439          131 WHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS------QGTIKVLVL  177 (179)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~iwd~  177 (179)
                      ...              ...-+-+.|+|||+++++++.      |+.++||+.
T Consensus       351 ~~~--------------a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  351 KFK--------------AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             ccc--------------cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence            655              334566889999999999876      677889975

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=2.4e-11  Score=86.55  Aligned_cols=127  Identities=13%  Similarity=0.231  Sum_probs=95.4

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-----------CCCceeeecccCceeEEEEeeC-CeEEEec
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-----------QSTAPCVHGHKKAVSYVKFLSN-DELASAS   71 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~   71 (179)
                      .++++.+++...+...+...++|.++.|+|++..+.++-           ..+.+++.-.+++=+++-|+|. ++++.++
T Consensus       251 q~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAG  330 (566)
T KOG2315|consen  251 QTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAG  330 (566)
T ss_pred             ceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEee
Confidence            467777777556667777899999999999997776654           3334444445667788999999 7777766


Q ss_pred             C---CCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc------CCcEEEEEcCCCccccccc
Q 038439           72 T---DSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE------SNEVYVYHKEISKPVTWHR  133 (179)
Q Consensus        72 ~---d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------d~~v~vwd~~~~~~~~~~~  133 (179)
                      .   .|.+-+||+.+.+++..++....  +-..|+|||++|+++..      |+.++||+.. |..+....
T Consensus       331 FGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~  398 (566)
T KOG2315|consen  331 FGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKM  398 (566)
T ss_pred             cCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceeehhh
Confidence            5   47899999999888888875443  45889999999998865      6789999985 44444433

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.39  E-value=9.1e-13  Score=88.84  Aligned_cols=155  Identities=14%  Similarity=0.192  Sum_probs=103.8

Q ss_pred             CCCceeEEEEcCCCCeEEEEe-------------CCCcee------eecccCceeEEEEeeC--CeEEEecCCCcEEEEe
Q 038439           22 MKANICCVKYNPGSSNYIAKY-------------QSTAPC------VHGHKKAVSYVKFLSN--DELASASTDSTLRLWD   80 (179)
Q Consensus        22 ~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~------~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd   80 (179)
                      |...|+++.++.|+..++.+-             .....+      +..-+..|++..|+|.  +.|+..+..|+|++-|
T Consensus       163 HtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD  242 (433)
T KOG1354|consen  163 HTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD  242 (433)
T ss_pred             ceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence            566799999999997777776             111111      2233567899999999  8999999999999999


Q ss_pred             cCCCcce----eee------------cCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCC-CccccccccCCCCCCCCc
Q 038439           81 VKENLPV----RTF------------RGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEI-SKPVTWHRFSSPDMDDTD  143 (179)
Q Consensus        81 ~~~~~~~----~~~------------~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~  143 (179)
                      ++...+.    ..+            .+-.+.|..+.|++.|+|+++-.. -+|++||+.+ .+++..++.........-
T Consensus       243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc  321 (433)
T KOG1354|consen  243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLC  321 (433)
T ss_pred             chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHH
Confidence            9853211    111            112346778999999999987553 5799999954 555555443222100000


Q ss_pred             ccCCcce---EEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          144 EDAGSYF---ISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       144 ~~~~~~~---i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      .......   -..++|+.++.++++|+..+..++|++
T Consensus       322 ~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~  358 (433)
T KOG1354|consen  322 SLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNL  358 (433)
T ss_pred             HHhhccchhheeEEEEcCCcceEecccccceEEEecC
Confidence            0000112   245789999999999999999999985

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.39  E-value=1.2e-10  Score=86.72  Aligned_cols=172  Identities=15%  Similarity=0.211  Sum_probs=122.1

Q ss_pred             ccEEEEEcCCceeEE-----eecCCCceeEEEEcCCCCeEEEEe-CCCcee----------------eecccCceeEEEE
Q 038439            4 GKVKVWCTRQEASVL-----NIDMKANICCVKYNPGSSNYIAKY-QSTAPC----------------VHGHKKAVSYVKF   61 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~----------------~~~~~~~i~~~~~   61 (179)
                      ..+.+|+.++.....     ..+|.-.+++.++||.+ .++++| ..|+..                +.=|...|.+++|
T Consensus       181 ~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~f  259 (792)
T KOG1963|consen  181 CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSF  259 (792)
T ss_pred             eeEEEEEecccceeeccchhhhhhcccceeEEecccc-ceEEEeccCCcEEEEeccccccccccceEEEecccccceeEE
Confidence            456788877644111     11366678999999999 566666 333322                3336678999999


Q ss_pred             eeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCC
Q 038439           62 LSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMD  140 (179)
Q Consensus        62 ~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~  140 (179)
                      +++ .+|++|+..+.+.+|.+.+++. +-+..-.++|..+.++||+.+.+...+|+.|.+....+.+.......-.+...
T Consensus       260 S~~G~~LlSGG~E~VLv~Wq~~T~~k-qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~  338 (792)
T KOG1963|consen  260 SSDGAYLLSGGREGVLVLWQLETGKK-QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTP  338 (792)
T ss_pred             ecCCceEeecccceEEEEEeecCCCc-ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCc
Confidence            999 9999999999999999998873 33334577899999999999999999999999998766544333221111100


Q ss_pred             CCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          141 DTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       141 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ...... ..-.+.++++|.-+.++..+..|.|.+||+-
T Consensus       339 ~~k~~~-~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~  375 (792)
T KOG1963|consen  339 STKTRP-QSLTTGVSIDPRTNSLVLNGHPGHVQFYDLY  375 (792)
T ss_pred             cccccc-cccceeEEEcCCCCceeecCCCceEEEEecc
Confidence            000001 4456788999977888889999999999974

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.39  E-value=4.9e-13  Score=99.16  Aligned_cols=98  Identities=19%  Similarity=0.441  Sum_probs=86.6

Q ss_pred             CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcce
Q 038439           22 MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPV   87 (179)
Q Consensus        22 ~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~   87 (179)
                      |...|.|+.|...| +.+.+|           .+..++  ..+|.+.|+.++.+.. -.++++|.|..|++|-+..+.++
T Consensus       189 H~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pv  267 (1113)
T KOG0644|consen  189 HRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPV  267 (1113)
T ss_pred             hhhheeeeeecccc-ceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchH
Confidence            67889999999999 555555           444555  8899999999999888 78899999999999999999999


Q ss_pred             eeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcC
Q 038439           88 RTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKE  124 (179)
Q Consensus        88 ~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~  124 (179)
                      ..+.+|++.|++++|+|-.    +.+.||++++||.+
T Consensus       268 svLrghtgavtaiafsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  268 SVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             HHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence            9999999999999999964    67889999999988

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.39  E-value=5.5e-11  Score=91.66  Aligned_cols=168  Identities=13%  Similarity=0.155  Sum_probs=116.3

Q ss_pred             CCCccEEEEEcCCc-------eeEEeec-CCCceeEEEEcCCCCeEEEEeCCCcee-------------------eec-c
Q 038439            1 MAYGKVKVWCTRQE-------ASVLNID-MKANICCVKYNPGSSNYIAKYQSTAPC-------------------VHG-H   52 (179)
Q Consensus         1 ~~d~~i~vwd~~~~-------~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~-------------------~~~-~   52 (179)
                      |+||+|++|+..+.       +...++. ...++.++...+.++.++++++.|...                   ... .
T Consensus      1068 S~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~ 1147 (1431)
T KOG1240|consen 1068 SDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKK 1147 (1431)
T ss_pred             cCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccC
Confidence            68999999998752       2333444 677899999988886666555332222                   111 1


Q ss_pred             cCceeEE-EEeeC--C-eEEEecCCCcEEEEecCCCcceeeecC--CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCC
Q 038439           53 KKAVSYV-KFLSN--D-ELASASTDSTLRLWDVKENLPVRTFRG--HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEIS  126 (179)
Q Consensus        53 ~~~i~~~-~~~~~--~-~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~  126 (179)
                      .+.+..+ +|...  . .++.+..-+.|..||+++..-...++.  ..+.|++++.+|.+.+++.|+..|.+.+||+|-+
T Consensus      1148 ~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1148 DGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred             CCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecC
Confidence            1223333 33333  3 677888889999999998655544442  3567999999999999999999999999999999


Q ss_pred             ccccccccCCCCCCCCcccCCcceEEEEEEccC---CCeEEE-Ee-CCCcEEEEeecC
Q 038439          127 KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD---SPTMLT-AN-SQGTIKVLVLAA  179 (179)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~-~~-~dg~i~iwd~~~  179 (179)
                      .++..+....           ..++..+..+|-   ....++ +. ..+.|.+|++.+
T Consensus      1228 ~~i~sw~~P~-----------~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1228 VPILSWEHPA-----------RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET 1274 (1431)
T ss_pred             ceeecccCcc-----------cCCcceEEeeccCCCCceEEEecccCCCceeeeeccc
Confidence            9888877643           456777777663   234444 44 477899999763

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.39  E-value=3.7e-12  Score=101.10  Aligned_cols=153  Identities=19%  Similarity=0.271  Sum_probs=120.8

Q ss_pred             CCCccEEEEEcCCceeEEeec--CCCceeEEEEcCCCCeEEEEe---------CCCcee--eecccCceeEEEEeeCCeE
Q 038439            1 MAYGKVKVWCTRQEASVLNID--MKANICCVKYNPGSSNYIAKY---------QSTAPC--VHGHKKAVSYVKFLSNDEL   67 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~---------~~~~~~--~~~~~~~i~~~~~~~~~~l   67 (179)
                      +.||.|++|....++.+..+.  .+..|+.+.|+.+|+.+-++-         -..+++  .+.|....+.++|.. ..+
T Consensus      2227 s~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~-s~~ 2305 (2439)
T KOG1064|consen 2227 SQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIG-SLL 2305 (2439)
T ss_pred             CCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCccccceeeee-hhh
Confidence            579999999999998888875  457899999999986664443         223444  778999999998877 455


Q ss_pred             EEe---cCCCcEEEEecCC--C-cceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCC
Q 038439           68 ASA---STDSTLRLWDVKE--N-LPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDD  141 (179)
Q Consensus        68 ~~~---~~d~~v~iwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~  141 (179)
                      +++   +.++.+.+||.--  . ..+.  ++|.+.++++++.|..+.|++|+.+|.|++||++..+.+..+.        
T Consensus      2306 ~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~-------- 2375 (2439)
T KOG1064|consen 2306 ATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ-------- 2375 (2439)
T ss_pred             hccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh--------
Confidence            554   3577999999643  2 2233  7899999999999999999999999999999999877766543        


Q ss_pred             CcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          142 TDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       142 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                            .       +. ...++++|+..|.++||++.
T Consensus      2376 ------~-------~~-~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2376 ------A-------LD-TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred             ------h-------hh-hhheeeccCcccceEEEEcc
Confidence                  2       34 56789999999999999975

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.36  E-value=2.3e-12  Score=84.02  Aligned_cols=122  Identities=17%  Similarity=0.278  Sum_probs=96.1

Q ss_pred             CCccEEEEEcCCceeEEee-----------cCCCceeEEEEcCCCCeEEEEe------------CCCcee----eecccC
Q 038439            2 AYGKVKVWCTRQEASVLNI-----------DMKANICCVKYNPGSSNYIAKY------------QSTAPC----VHGHKK   54 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~~~~~~------------~~~~~~----~~~~~~   54 (179)
                      ++|.+.+||+.++..+..+           .|..+|.++.|.+.-..=+..|            ..+..-    ..-..-
T Consensus       173 Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknp  252 (323)
T KOG0322|consen  173 ESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNP  252 (323)
T ss_pred             cCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCC
Confidence            5789999999987433222           3788999999987433323322            111111    222234


Q ss_pred             ceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEc
Q 038439           55 AVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHK  123 (179)
Q Consensus        55 ~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~  123 (179)
                      .|..+..-|| ..++|++.|+.+|||..++..++..++-|...|.+++|+|+...+|.++.|+.|.+|++
T Consensus       253 Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  253 GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            5788899999 89999999999999999999999999999999999999999999999999999999986

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.35  E-value=1.1e-10  Score=78.68  Aligned_cols=161  Identities=15%  Similarity=0.206  Sum_probs=109.2

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe------------------------------------CCCc
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY------------------------------------QSTA   46 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------------------------------------~~~~   46 (179)
                      |-+|.||++.+.+....-..+..+..++|+|+|+ +.+..                                    ..+.
T Consensus       113 ~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~-f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~  191 (447)
T KOG4497|consen  113 DLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQ-FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGN  191 (447)
T ss_pred             eeEEEEEEeccceeEEecccccCceeEEECCCCc-eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCc
Confidence            4578999998877655444556678888888884 44433                                    1111


Q ss_pred             -------ee-----eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCC-----------------------------
Q 038439           47 -------PC-----VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKEN-----------------------------   84 (179)
Q Consensus        47 -------~~-----~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~-----------------------------   84 (179)
                             ++     .....-.+..++|+|. ++++.|+.|+.+|+.+--+-                             
T Consensus       192 ~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~q  271 (447)
T KOG4497|consen  192 WLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQ  271 (447)
T ss_pred             EEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhh
Confidence                   11     1122346788999998 99999999999987543211                             


Q ss_pred             -------------------------------cceeeec------CCCCCeEEEEEeeCCCEEEEecc--CCcEEEEEcCC
Q 038439           85 -------------------------------LPVRTFR------GHMNEKNFVGLTVNSEYIACGSE--SNEVYVYHKEI  125 (179)
Q Consensus        85 -------------------------------~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~--d~~v~vwd~~~  125 (179)
                                                     ..+..++      .....+.-++|++|..++++-..  -+.+.+||++.
T Consensus       272 l~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~  351 (447)
T KOG4497|consen  272 LLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN  351 (447)
T ss_pred             hcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh
Confidence                                           0011111      12234667899999999887654  35689999998


Q ss_pred             CccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          126 SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      .+.-..+.-             ..+|....|.|....|+.+....++++|..
T Consensus       352 l~l~avLiQ-------------k~piraf~WdP~~prL~vctg~srLY~W~p  390 (447)
T KOG4497|consen  352 LKLHAVLIQ-------------KHPIRAFEWDPGRPRLVVCTGKSRLYFWAP  390 (447)
T ss_pred             hhhhhhhhh-------------ccceeEEEeCCCCceEEEEcCCceEEEEcC
Confidence            765444332             567999999999888888888888999865

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=5.9e-10  Score=81.03  Aligned_cols=159  Identities=9%  Similarity=0.004  Sum_probs=96.0

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-CC------------Ccee-eecccCceeEEEEeeC-CeEE
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-QS------------TAPC-VHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~------------~~~~-~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      ..|.+||+.+++........+.+...+|+|+|+.++.+. ..            ++.. +..+........|+|+ ..++
T Consensus       223 ~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~  302 (430)
T PRK00178        223 PRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLY  302 (430)
T ss_pred             CEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEE
Confidence            358888888876654444455566899999997776544 11            1111 3333444566789999 6665


Q ss_pred             Eec-CCC--cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccC-C--cEEEEEcCCCccccccccCCCCCCCC
Q 038439           69 SAS-TDS--TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSES-N--EVYVYHKEISKPVTWHRFSSPDMDDT  142 (179)
Q Consensus        69 ~~~-~d~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d-~--~v~vwd~~~~~~~~~~~~~~~~~~~~  142 (179)
                      ..+ .++  .|.++|+.+++... +...........|+|+|++++....+ +  .|.++|+.+++.... ...       
T Consensus       303 f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~l-t~~-------  373 (430)
T PRK00178        303 FTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRIL-TDT-------  373 (430)
T ss_pred             EEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEc-cCC-------
Confidence            544 333  57777877765432 22222233457899999998766543 3  588899988764322 111       


Q ss_pred             cccCCcceEEEEEEccCCCeEEEEeCC-C--cEEEEee
Q 038439          143 DEDAGSYFISAVCWKSDSPTMLTANSQ-G--TIKVLVL  177 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~iwd~  177 (179)
                            .......|+|+|+.++..+.+ |  .+.++++
T Consensus       374 ------~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~  405 (430)
T PRK00178        374 ------SLDESPSVAPNGTMLIYATRQQGRGVLMLVSI  405 (430)
T ss_pred             ------CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence                  011235799999988776653 3  3555443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=4.8e-10  Score=81.18  Aligned_cols=163  Identities=11%  Similarity=0.040  Sum_probs=93.2

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeE--EEEe-CCCc------------ee-eecccCceeEEEEeeC-Ce
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNY--IAKY-QSTA------------PC-VHGHKKAVSYVKFLSN-DE   66 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~-~~~~------------~~-~~~~~~~i~~~~~~~~-~~   66 (179)
                      ..|.+.|...++..........+.+-+|+|||+.+  +.+. +.++            .. +....+.....+|+|| ..
T Consensus       165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~  244 (428)
T PRK01029        165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL  244 (428)
T ss_pred             ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence            35667777666554444456667889999999753  2233 2211            11 2222334456789999 66


Q ss_pred             EEEecC-----CCcEEEEecCCC---cceeeecCCCCCeEEEEEeeCCCEEEEec-cCCcEEEE--EcCC-Ccccccccc
Q 038439           67 LASAST-----DSTLRLWDVKEN---LPVRTFRGHMNEKNFVGLTVNSEYIACGS-ESNEVYVY--HKEI-SKPVTWHRF  134 (179)
Q Consensus        67 l~~~~~-----d~~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d~~v~vw--d~~~-~~~~~~~~~  134 (179)
                      |+..+.     +..+..|++..+   +...............+|+|||+.|+..+ .+|...+|  ++.. +.....+..
T Consensus       245 Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~  324 (428)
T PRK01029        245 LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK  324 (428)
T ss_pred             EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc
Confidence            665442     224455776642   32222222223445689999999877654 45655555  4432 121111111


Q ss_pred             CCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCC---CcEEEEeec
Q 038439          135 SSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQ---GTIKVLVLA  178 (179)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~  178 (179)
                      .            ...+....|+|||+.|+..+.+   ..|.+||+.
T Consensus       325 ~------------~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~  359 (428)
T PRK01029        325 K------------YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLA  359 (428)
T ss_pred             C------------CCCccceeECCCCCEEEEEEcCCCCcEEEEEECC
Confidence            0            2345678899999988876553   368888875

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.30  E-value=3.2e-09  Score=75.35  Aligned_cols=165  Identities=14%  Similarity=0.108  Sum_probs=105.4

Q ss_pred             CCccEEEEEcCCceeEEeecCCCce-eEEEEcCCCCeEEEEeCC----------Ccee--eecccCceeEEEEeeC-CeE
Q 038439            2 AYGKVKVWCTRQEASVLNIDMKANI-CCVKYNPGSSNYIAKYQS----------TAPC--VHGHKKAVSYVKFLSN-DEL   67 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~----------~~~~--~~~~~~~i~~~~~~~~-~~l   67 (179)
                      .+|.|.|.|..+.+.+..+.....+ ..+.|+|||+.++++++.          .+.+  ++. ......++++++ +++
T Consensus        14 ~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~s~DG~~~   92 (369)
T PF02239_consen   14 GSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIAVSPDGKYV   92 (369)
T ss_dssp             GGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEEE--TTTEE
T ss_pred             CCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEEEcCCCCEE
Confidence            5789999999999999999865554 557899999888887732          2222  222 233467999999 777


Q ss_pred             EEec-CCCcEEEEecCCCcceeeecCC-------CCCeEEEEEeeCCCEEE-EeccCCcEEEEEcCCCccccccccCCCC
Q 038439           68 ASAS-TDSTLRLWDVKENLPVRTFRGH-------MNEKNFVGLTVNSEYIA-CGSESNEVYVYHKEISKPVTWHRFSSPD  138 (179)
Q Consensus        68 ~~~~-~d~~v~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~-~~~~d~~v~vwd~~~~~~~~~~~~~~~~  138 (179)
                      +++. ..+.+.++|.++.+++..+...       .+.+..+.-+|....++ ..-+.+.|.+.|....+.+.......  
T Consensus        93 ~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~--  170 (369)
T PF02239_consen   93 YVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV--  170 (369)
T ss_dssp             EEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---
T ss_pred             EEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc--
Confidence            7665 5889999999999888876532       33566777788777554 44555888888887765443222211  


Q ss_pred             CCCCcccCCcceEEEEEEccCCCeEEEE-eCCCcEEEEeec
Q 038439          139 MDDTDEDAGSYFISAVCWKSDSPTMLTA-NSQGTIKVLVLA  178 (179)
Q Consensus       139 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~  178 (179)
                               ........|+|++++++++ ..++.|-++|.+
T Consensus       171 ---------g~~~~D~~~dpdgry~~va~~~sn~i~viD~~  202 (369)
T PF02239_consen  171 ---------GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTK  202 (369)
T ss_dssp             ----------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETT
T ss_pred             ---------cccccccccCcccceeeecccccceeEEEeec
Confidence                     4457789999999987664 456688888765

...

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=1.3e-09  Score=79.48  Aligned_cols=158  Identities=7%  Similarity=0.028  Sum_probs=92.4

Q ss_pred             cEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-CC------------Ccee-eecccCceeEEEEeeC-CeEEE
Q 038439            5 KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-QS------------TAPC-VHGHKKAVSYVKFLSN-DELAS   69 (179)
Q Consensus         5 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~------------~~~~-~~~~~~~i~~~~~~~~-~~l~~   69 (179)
                      .|.+||+.+++..............+|+|+|+.++.+. ..            ++.. +..+........|+|+ ..++.
T Consensus       243 ~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f  322 (448)
T PRK04792        243 EIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIF  322 (448)
T ss_pred             EEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEE
Confidence            57888888776543333344456789999998776654 11            1111 3334444567889999 66655


Q ss_pred             ec-CCC--cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc-CC--cEEEEEcCCCccccccccCCCCCCCCc
Q 038439           70 AS-TDS--TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE-SN--EVYVYHKEISKPVTWHRFSSPDMDDTD  143 (179)
Q Consensus        70 ~~-~d~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~--~v~vwd~~~~~~~~~~~~~~~~~~~~~  143 (179)
                      .+ .++  .|.++|+.+++... +..........+|+|||++++..+. ++  .|.++|+.+++.... ...        
T Consensus       323 ~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~l-t~~--------  392 (448)
T PRK04792        323 TSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVL-TST--------  392 (448)
T ss_pred             EECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEc-cCC--------
Confidence            44 344  46666777665432 2212222345789999999876554 33  456678877654321 110        


Q ss_pred             ccCCcceEEEEEEccCCCeEEEEeC-CCc--EEEEee
Q 038439          144 EDAGSYFISAVCWKSDSPTMLTANS-QGT--IKVLVL  177 (179)
Q Consensus       144 ~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--i~iwd~  177 (179)
                           .......|+|+|+.|+..+. ++.  +.+++.
T Consensus       393 -----~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~  424 (448)
T PRK04792        393 -----RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI  424 (448)
T ss_pred             -----CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence                 01123479999998876554 333  555554

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.23  E-value=3.8e-10  Score=79.98  Aligned_cols=99  Identities=14%  Similarity=0.111  Sum_probs=77.9

Q ss_pred             EEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCC
Q 038439           68 ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAG  147 (179)
Q Consensus        68 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  147 (179)
                      ++-..++.|.+.|..+.+.+..+.........+.++|||+++++.+.||.|.++|+.+.+.+.....             
T Consensus        10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-------------   76 (369)
T PF02239_consen   10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-------------   76 (369)
T ss_dssp             EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--------------
T ss_pred             EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-------------
Confidence            4566789999999999999998876544445578999999999999999999999999998888776             


Q ss_pred             cceEEEEEEccCCCeEEEEe-CCCcEEEEeecC
Q 038439          148 SYFISAVCWKSDSPTMLTAN-SQGTIKVLVLAA  179 (179)
Q Consensus       148 ~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~  179 (179)
                      ......+++++||+++++++ .++.+.++|.++
T Consensus        77 G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t  109 (369)
T PF02239_consen   77 GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAET  109 (369)
T ss_dssp             SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT
T ss_pred             CCCcceEEEcCCCCEEEEEecCCCceeEecccc
Confidence            55678899999999998876 488999999653

...

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.22  E-value=1.7e-08  Score=70.68  Aligned_cols=101  Identities=10%  Similarity=0.061  Sum_probs=71.2

Q ss_pred             CeEEEecCCCcEEEEecCCC-----cceeeecC-------CCCCeEEEEEeeCCCEEEEec----------cCCcEEEEE
Q 038439           65 DELASASTDSTLRLWDVKEN-----LPVRTFRG-------HMNEKNFVGLTVNSEYIACGS----------ESNEVYVYH  122 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~-----~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~----------~d~~v~vwd  122 (179)
                      ..+.... .|.|.+.|+...     +....+..       ......-++++|+++.+++..          ..+.|.++|
T Consensus       207 ~~~~vs~-eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD  285 (352)
T TIGR02658       207 RLVWPTY-TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVD  285 (352)
T ss_pred             cEEEEec-CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEE
Confidence            4444444 499999996442     22222211       122334599999998887743          225799999


Q ss_pred             cCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCC-eEEEEe-CCCcEEEEeecC
Q 038439          123 KEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSP-TMLTAN-SQGTIKVLVLAA  179 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~  179 (179)
                      ..+.+.+..+..             ...+..++++||++ +|++.. .++.|.++|..+
T Consensus       286 ~~t~kvi~~i~v-------------G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t  331 (352)
T TIGR02658       286 AKTGKRLRKIEL-------------GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET  331 (352)
T ss_pred             CCCCeEEEEEeC-------------CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence            999998887776             66789999999999 888777 578899999753

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.22  E-value=3.5e-09  Score=69.72  Aligned_cols=165  Identities=12%  Similarity=0.036  Sum_probs=108.0

Q ss_pred             CCCccEEEEEcCCceeEEeecCC-CceeEEEEcCCCCeEEEEeCCC-----------cee----eecccCceeEEEEeeC
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMK-ANICCVKYNPGSSNYIAKYQST-----------APC----VHGHKKAVSYVKFLSN   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~-----------~~~----~~~~~~~i~~~~~~~~   64 (179)
                      +.|.++++.++..+......... -.+.++.+++++....++|+..           +.+    ....+..=.+..|+..
T Consensus       135 sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~  214 (344)
T KOG4532|consen  135 SNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN  214 (344)
T ss_pred             cCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccC
Confidence            45777777777654433222211 3388999999997777777222           222    2222333456778877


Q ss_pred             -CeEEEecCCCcEEEEecCCC-ccee----eecCCCCCeEEEEEeeCCC--EEEEeccCCcEEEEEcCCCccccccccCC
Q 038439           65 -DELASASTDSTLRLWDVKEN-LPVR----TFRGHMNEKNFVGLTVNSE--YIACGSESNEVYVYHKEISKPVTWHRFSS  136 (179)
Q Consensus        65 -~~l~~~~~d~~v~iwd~~~~-~~~~----~~~~~~~~v~~~~~~~~~~--~~~~~~~d~~v~vwd~~~~~~~~~~~~~~  136 (179)
                       ..+++++.||++.|||++.- .++.    +-..|.+.++.+.|++-|.  +|+..-.-+.+.+.|+++++..+......
T Consensus       215 ~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~  294 (344)
T KOG4532|consen  215 DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD  294 (344)
T ss_pred             cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc
Confidence             88999999999999999863 2222    2234788999999998654  35555567889999999988766554432


Q ss_pred             CCCCCCcccCCcceEEEEEEccCCCeEEEEeCC
Q 038439          137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQ  169 (179)
Q Consensus       137 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  169 (179)
                      ..    +..|....|..-.|+.++..+.+.+++
T Consensus       295 d~----~~~~~tq~ifgt~f~~~n~s~~v~~e~  323 (344)
T KOG4532|consen  295 DV----ERKHNTQHIFGTNFNNENESNDVKNEL  323 (344)
T ss_pred             cc----cccccccccccccccCCCcccccccch
Confidence            21    223324457888888777766666554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.20  E-value=1.6e-08  Score=68.98  Aligned_cols=167  Identities=10%  Similarity=0.089  Sum_probs=111.8

Q ss_pred             CccEEEEEcCCc----eeEEeecCCCceeEEEEcCCCCeEEEEeC---------------CCcee----eecccCceeEE
Q 038439            3 YGKVKVWCTRQE----ASVLNIDMKANICCVKYNPGSSNYIAKYQ---------------STAPC----VHGHKKAVSYV   59 (179)
Q Consensus         3 d~~i~vwd~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---------------~~~~~----~~~~~~~i~~~   59 (179)
                      ..-|++|++.+.    ..++.....+.++-++|+|+++.++++..               .++.-    ......+-..+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            567899988743    23344456788999999999977777651               12222    11112233678


Q ss_pred             EEeeC-CeEEEecC-CCcEEEEecCC-Cccee--eecCCCCC----------eEEEEEeeCCCEEEEecc-CCcEEEEEc
Q 038439           60 KFLSN-DELASAST-DSTLRLWDVKE-NLPVR--TFRGHMNE----------KNFVGLTVNSEYIACGSE-SNEVYVYHK  123 (179)
Q Consensus        60 ~~~~~-~~l~~~~~-d~~v~iwd~~~-~~~~~--~~~~~~~~----------v~~~~~~~~~~~~~~~~~-d~~v~vwd~  123 (179)
                      +++++ ++++++.. .+.|.++-++. +.+..  ....|.+.          +....+.|+++++++... .-.|.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            88888 78887765 57899998865 32211  11123333          778889999999887754 346899999


Q ss_pred             CCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEeec
Q 038439          124 EISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVLA  178 (179)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~  178 (179)
                      ..++....-...-.        . +...+.+.|+|++++.++.++ +++|.+|..+
T Consensus       175 ~dg~L~~~~~~~v~--------~-G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~  221 (346)
T COG2706         175 DDGKLTPADPAEVK--------P-GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYN  221 (346)
T ss_pred             ccCccccccccccC--------C-CCCcceEEEcCCCcEEEEEeccCCEEEEEEEc
Confidence            97765432222111        1 567889999999999988887 8899999865

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.19  E-value=8.5e-11  Score=55.86  Aligned_cols=38  Identities=32%  Similarity=0.560  Sum_probs=36.1

Q ss_pred             cceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEE
Q 038439           85 LPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYH  122 (179)
Q Consensus        85 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd  122 (179)
                      +++.++++|.+.|++++|+|++.+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.19  E-value=6.7e-10  Score=76.35  Aligned_cols=95  Identities=9%  Similarity=0.171  Sum_probs=73.9

Q ss_pred             CCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceE
Q 038439           72 TDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFI  151 (179)
Q Consensus        72 ~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  151 (179)
                      ....+.+|...++.+ ..+-+|-+-+..++|+||+++|+++..|..|++-.....-.+..+.+          +| ...|
T Consensus       130 D~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl----------GH-~eFV  197 (390)
T KOG3914|consen  130 DVYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL----------GH-KEFV  197 (390)
T ss_pred             CceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc----------cc-Hhhe
Confidence            334455555554443 34457899999999999999999999999999988877666666665          23 7789


Q ss_pred             EEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          152 SAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       152 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      ..++.-++ ..|++++.|+++++||+++
T Consensus       198 S~isl~~~-~~LlS~sGD~tlr~Wd~~s  224 (390)
T KOG3914|consen  198 STISLTDN-YLLLSGSGDKTLRLWDITS  224 (390)
T ss_pred             eeeeeccC-ceeeecCCCCcEEEEeccc
Confidence            99998764 5589999999999999864

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.18  E-value=2.8e-10  Score=80.11  Aligned_cols=170  Identities=14%  Similarity=0.159  Sum_probs=121.0

Q ss_pred             CCCccEEEEEcCCceeEEeec--CCCceeEEEEcCCC--CeEEEEeCC-----------Cce---e-eecccCceeEEEE
Q 038439            1 MAYGKVKVWCTRQEASVLNID--MKANICCVKYNPGS--SNYIAKYQS-----------TAP---C-VHGHKKAVSYVKF   61 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~--~~~~~~~~~-----------~~~---~-~~~~~~~i~~~~~   61 (179)
                      |+|..|.+||...++....+.  |...|....|-|..  ..++.++..           +..   . +..|.++|..++.
T Consensus       161 SDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav  240 (559)
T KOG1334|consen  161 SDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAV  240 (559)
T ss_pred             CccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeee
Confidence            679999999999998887775  66777777776642  234444411           111   1 6679999999999


Q ss_pred             eeC--CeEEEecCCCcEEEEecCCCcceeeec---CCCC---CeEEEEEeeCCC-EEEEeccCCcEEEEEcCCCccc---
Q 038439           62 LSN--DELASASTDSTLRLWDVKENLPVRTFR---GHMN---EKNFVGLTVNSE-YIACGSESNEVYVYHKEISKPV---  129 (179)
Q Consensus        62 ~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~---~v~~~~~~~~~~-~~~~~~~d~~v~vwd~~~~~~~---  129 (179)
                      -|+  ..|.+++.|+.+.-+|++...+...+.   .+..   ....++..|... ++++|+.|-.+++||.+.-...   
T Consensus       241 ~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n  320 (559)
T KOG1334|consen  241 EPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENN  320 (559)
T ss_pred             cCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhcccc
Confidence            999  789999999999999999865544332   2223   456788888655 6899999999999998864322   


Q ss_pred             ---cccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439          130 ---TWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       130 ---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  176 (179)
                         ..+.. .+..     ......|++++|+.++.-|.++..|-.|+++.
T Consensus       321 ~~~~~f~p-~hl~-----~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~  364 (559)
T KOG1334|consen  321 GVLDKFCP-HHLV-----EDDPVNITGLVYSHDGSELLASYNDEDIYLFN  364 (559)
T ss_pred             chhhhcCC-cccc-----ccCcccceeEEecCCccceeeeecccceEEec
Confidence               11111 1110     01155799999998887788888888899884

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.17  E-value=6e-09  Score=69.33  Aligned_cols=112  Identities=11%  Similarity=0.096  Sum_probs=83.1

Q ss_pred             eEEEEeeC-CeEEEecCCCcEEEEecCCCc--ceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCc-cccc
Q 038439           57 SYVKFLSN-DELASASTDSTLRLWDVKENL--PVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISK-PVTW  131 (179)
Q Consensus        57 ~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~-~~~~  131 (179)
                      .++.|++. ..++++-.+|.+.+-+.....  .++..+.|.-+.+...|+.. .+.+++|+.|+.+..||+|..+ .+..
T Consensus       125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~  204 (339)
T KOG0280|consen  125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH  204 (339)
T ss_pred             eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence            45667777 678888888888865555443  33478889999999999874 6788999999999999999433 2211


Q ss_pred             cccCCCCCCCCcccCCcceEEEEEEcc-CCCeEEEEeCCCcEEEEeecC
Q 038439          132 HRFSSPDMDDTDEDAGSYFISAVCWKS-DSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      . .          ..|...|.++.-+| .+.++++|+.|..|++||.++
T Consensus       205 n-~----------kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn  242 (339)
T KOG0280|consen  205 N-S----------KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN  242 (339)
T ss_pred             c-c----------eeeecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence            1 1          11266788887775 678999999999999999874

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.15  E-value=1.8e-08  Score=72.81  Aligned_cols=150  Identities=7%  Similarity=-0.003  Sum_probs=91.7

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-------------CCCcee-eecccCceeEEEEeeC-CeE
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-------------QSTAPC-VHGHKKAVSYVKFLSN-DEL   67 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~~~~i~~~~~~~~-~~l   67 (179)
                      +..|.++|+.+++........+......|+|||..++.+.             ..++.. +..+........|+|| +.+
T Consensus       212 ~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I  291 (419)
T PRK04043        212 KPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRI  291 (419)
T ss_pred             CCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEE
Confidence            3468888888877665555666677889999998776654             112211 3223322345679999 555


Q ss_pred             EEec-CCC--cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccC---------CcEEEEEcCCCccccccccC
Q 038439           68 ASAS-TDS--TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSES---------NEVYVYHKEISKPVTWHRFS  135 (179)
Q Consensus        68 ~~~~-~d~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d---------~~v~vwd~~~~~~~~~~~~~  135 (179)
                      +..+ ..+  .|.+.|+.+++..+......   ....|+|+|++++.....         ..|.+.|+.+++.... .. 
T Consensus       292 ~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~---~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~L-T~-  366 (419)
T PRK04043        292 VFVSDRLGYPNIFMKKLNSGSVEQVVFHGK---NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRL-TA-  366 (419)
T ss_pred             EEEECCCCCceEEEEECCCCCeEeCccCCC---cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEEC-CC-
Confidence            5444 333  57777887766533222111   124899999988765443         3678888887764322 11 


Q ss_pred             CCCCCCCcccCCcceEEEEEEccCCCeEEEEeCC
Q 038439          136 SPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQ  169 (179)
Q Consensus       136 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  169 (179)
                                  ........|+|||+.++..+.+
T Consensus       367 ------------~~~~~~p~~SPDG~~I~f~~~~  388 (419)
T PRK04043        367 ------------NGVNQFPRFSSDGGSIMFIKYL  388 (419)
T ss_pred             ------------CCCcCCeEECCCCCEEEEEEcc
Confidence                        1112247899999988766543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.15  E-value=6.5e-08  Score=68.43  Aligned_cols=166  Identities=11%  Similarity=0.152  Sum_probs=101.7

Q ss_pred             CccEEEEEcCC-ceeEEe---ec-----------CCCceeEEEEcCCCCeEEEEe-----------CCCc--e--e--ee
Q 038439            3 YGKVKVWCTRQ-EASVLN---ID-----------MKANICCVKYNPGSSNYIAKY-----------QSTA--P--C--VH   50 (179)
Q Consensus         3 d~~i~vwd~~~-~~~~~~---~~-----------~~~~v~~~~~~~~~~~~~~~~-----------~~~~--~--~--~~   50 (179)
                      +|+|.++++.. +.....   +.           ....+.++.|+|+++.++++.           +...  .  .  +.
T Consensus       108 ~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~  187 (345)
T PF10282_consen  108 GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIK  187 (345)
T ss_dssp             TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEE
T ss_pred             CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccc
Confidence            67889999876 333222   21           224578999999997777765           1111  1  0  11


Q ss_pred             -cccCceeEEEEeeC-CeE-EEecCCCcEEEEecC--CCc--ceeeecC----C--CCCeEEEEEeeCCCEEEEec-cCC
Q 038439           51 -GHKKAVSYVKFLSN-DEL-ASASTDSTLRLWDVK--ENL--PVRTFRG----H--MNEKNFVGLTVNSEYIACGS-ESN  116 (179)
Q Consensus        51 -~~~~~i~~~~~~~~-~~l-~~~~~d~~v~iwd~~--~~~--~~~~~~~----~--~~~v~~~~~~~~~~~~~~~~-~d~  116 (179)
                       .....-..+.|+|+ .++ ++.-.++.|.++++.  .+.  .+..+..    .  ......+.++|||++++++. ..+
T Consensus       188 ~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~  267 (345)
T PF10282_consen  188 VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN  267 (345)
T ss_dssp             CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT
T ss_pred             cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC
Confidence             12233467899999 555 455568889999988  332  2222221    1  12567899999999987665 467


Q ss_pred             cEEEEEcCC--CccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEeec
Q 038439          117 EVYVYHKEI--SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVLA  178 (179)
Q Consensus       117 ~v~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~  178 (179)
                      .|.+|++..  ++..........          ....+.+.++|+|++|+++.. ++.|.+|++.
T Consensus       268 sI~vf~~d~~~g~l~~~~~~~~~----------G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  268 SISVFDLDPATGTLTLVQTVPTG----------GKFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEEEEEECTTTTTEEEEEEEEES----------SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEEEEEecCCCceEEEEEEeCC----------CCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            899999942  333221111100          345789999999999998875 6789999864

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.08  E-value=2.8e-09  Score=75.27  Aligned_cols=165  Identities=15%  Similarity=0.233  Sum_probs=120.1

Q ss_pred             CCCccEEEEEcCCceeEEee---c-CCC---ceeEEEEcCCCCeEEEEeC-----------------CCcee--------
Q 038439            1 MAYGKVKVWCTRQEASVLNI---D-MKA---NICCVKYNPGSSNYIAKYQ-----------------STAPC--------   48 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~---~-~~~---~v~~~~~~~~~~~~~~~~~-----------------~~~~~--------   48 (179)
                      |.|+.+.-+|+....+...+   . ...   ...+++.+|...+.+++|.                 ...++        
T Consensus       252 geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl  331 (559)
T KOG1334|consen  252 GEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHL  331 (559)
T ss_pred             ccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccc
Confidence            56888888888776543333   2 222   4688999999888888870                 00111        


Q ss_pred             eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCC--C----------cceee-ecCCCC--CeEEEE-EeeCCCEEEE
Q 038439           49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKE--N----------LPVRT-FRGHMN--EKNFVG-LTVNSEYIAC  111 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~--~----------~~~~~-~~~~~~--~v~~~~-~~~~~~~~~~  111 (179)
                      .....-.|++++|+.+ ..++++-.|-.|.++.-..  +          ..+.. +++|..  .|..+- |-|...|+++
T Consensus       332 ~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvS  411 (559)
T KOG1334|consen  332 VEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVS  411 (559)
T ss_pred             cccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEe
Confidence            1123446899999988 7777778888899985432  2          12223 677754  466666 4688999999


Q ss_pred             eccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          112 GSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       112 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      |+.-|.|.+|+-.+++.+..++-.            ..-|+|+.=+|--..||+++-|..|+||-.
T Consensus       412 GSDCGhIFiW~K~t~eii~~MegD------------r~VVNCLEpHP~~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  412 GSDCGHIFIWDKKTGEIIRFMEGD------------RHVVNCLEPHPHLPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             cCccceEEEEecchhHHHHHhhcc------------cceEeccCCCCCCchhhccCCccceeeecC
Confidence            999999999999999988776643            447899999999999999999999999964

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.06  E-value=4.4e-09  Score=80.04  Aligned_cols=100  Identities=18%  Similarity=0.262  Sum_probs=84.0

Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE  144 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~  144 (179)
                      =++++|+--+.|.+|+....+.-..+.+|.+.+..+.++.||+++++.++|+.+++|++.+.+...-.-+          
T Consensus       146 ~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~f----------  215 (967)
T KOG0974|consen  146 LYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGF----------  215 (967)
T ss_pred             EEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccc----------
Confidence            5678888889999999874333335789999999999999999999999999999999999876652221          


Q ss_pred             cCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          145 DAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       145 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      +| ..++++++|.|+  .+++++.|-++++|+.
T Consensus       216 gH-saRvw~~~~~~n--~i~t~gedctcrvW~~  245 (967)
T KOG0974|consen  216 GH-SARVWACCFLPN--RIITVGEDCTCRVWGV  245 (967)
T ss_pred             cc-cceeEEEEeccc--eeEEeccceEEEEEec
Confidence            22 889999999998  8999999999999954

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.04  E-value=4.1e-10  Score=75.59  Aligned_cols=154  Identities=14%  Similarity=0.221  Sum_probs=97.7

Q ss_pred             CCCceeEEEEcCCCCeEEEEe-------------CCCcee-eecc-----cCceeEEEEeeC--CeEEEecCCCcEEEEe
Q 038439           22 MKANICCVKYNPGSSNYIAKY-------------QSTAPC-VHGH-----KKAVSYVKFLSN--DELASASTDSTLRLWD   80 (179)
Q Consensus        22 ~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~-----~~~i~~~~~~~~--~~l~~~~~d~~v~iwd   80 (179)
                      |...|.++.|+.+...++.+.             .....+ ++.|     +..|++..|+|.  ..+...+..|.|++-|
T Consensus       171 H~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~D  250 (460)
T COG5170         171 HPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLND  250 (460)
T ss_pred             ceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehh
Confidence            445588999999887776665             111111 3333     456889999999  8888889999999999


Q ss_pred             cCCCcce------e--e--------ecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCc-cccccccCCCCCCCCc
Q 038439           81 VKENLPV------R--T--------FRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK-PVTWHRFSSPDMDDTD  143 (179)
Q Consensus        81 ~~~~~~~------~--~--------~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~-~~~~~~~~~~~~~~~~  143 (179)
                      +++..+.      .  +        +.+-.+.|..+.|+++|++|++-.. -+|++||+++.+ ++.+.......+...-
T Consensus       251 lRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~  329 (460)
T COG5170         251 LRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELN  329 (460)
T ss_pred             hhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHH
Confidence            9853211      1  1        1112356778899999999987654 579999999743 4444422111000000


Q ss_pred             ccCCcceE---EEEEEccCCCeEEEEeCCCcEEEEe
Q 038439          144 EDAGSYFI---SAVCWKSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       144 ~~~~~~~i---~~~~~~~~~~~l~~~~~dg~i~iwd  176 (179)
                      .......|   ..+.|+.+.+.+++|+..+..-+|-
T Consensus       330 d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         330 DVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             hhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence            00002223   3477888888899999887776664

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.03  E-value=6.3e-08  Score=68.99  Aligned_cols=161  Identities=12%  Similarity=0.116  Sum_probs=108.2

Q ss_pred             CCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe--------------------CCCcee--eecccCceeE
Q 038439            2 AYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY--------------------QSTAPC--VHGHKKAVSY   58 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~--------------------~~~~~~--~~~~~~~i~~   58 (179)
                      .++++++|.+.....+.+-. .+..=..+.|++.|..+++..                    -+++.+  ..+-.++|..
T Consensus       200 kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhd  279 (561)
T COG5354         200 KPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHD  279 (561)
T ss_pred             CCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceecccccccee
Confidence            46778888887666555433 233335688888887666554                    011111  1245789999


Q ss_pred             EEEeeC-CeEEEe--cCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccC---CcEEEEEcCCCcccccc
Q 038439           59 VKFLSN-DELASA--STDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSES---NEVYVYHKEISKPVTWH  132 (179)
Q Consensus        59 ~~~~~~-~~l~~~--~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d---~~v~vwd~~~~~~~~~~  132 (179)
                      +.|.|. +.+++.  -.+..+.++|++.. ....  .....=..+.|+|.+++++.++-|   |.+.+||......+...
T Consensus       280 f~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~  356 (561)
T COG5354         280 FTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGA  356 (561)
T ss_pred             eeecccCCceeEEecccccceeecccccc-eEEe--cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEE
Confidence            999999 665554  46888999999865 3322  234445678899999998886654   77999998765544321


Q ss_pred             ccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC------CCcEEEEeec
Q 038439          133 RFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS------QGTIKVLVLA  178 (179)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~iwd~~  178 (179)
                       +.            .....-+.|+|+++++.+...      |..+.|||+.
T Consensus       357 -~~------------~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~  395 (561)
T COG5354         357 -FN------------GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY  395 (561)
T ss_pred             -ee------------cCCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence             21            333455779999999887654      7789999973

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.02  E-value=4.1e-07  Score=72.72  Aligned_cols=124  Identities=12%  Similarity=0.066  Sum_probs=82.2

Q ss_pred             eeEEEEeeC-C-eEEEecCCCcEEEEecCCCcceeee-------------cCC--------CCCeEEEEEeeCCCEEEEe
Q 038439           56 VSYVKFLSN-D-ELASASTDSTLRLWDVKENLPVRTF-------------RGH--------MNEKNFVGLTVNSEYIACG  112 (179)
Q Consensus        56 i~~~~~~~~-~-~l~~~~~d~~v~iwd~~~~~~~~~~-------------~~~--------~~~v~~~~~~~~~~~~~~~  112 (179)
                      ...++++|+ + .+++-+.++.|++||+.++......             -..        -.....++++++|..+++-
T Consensus       742 P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVAD  821 (1057)
T PLN02919        742 PSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVAD  821 (1057)
T ss_pred             ccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEE
Confidence            356899999 5 5566677899999999865422110             000        1124578999999988888


Q ss_pred             ccCCcEEEEEcCCCccccccccCCCCC-CCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          113 SESNEVYVYHKEISKPVTWHRFSSPDM-DDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       113 ~~d~~v~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      ..++.|++||..++............. ........-.....++++++|+.+++-+.++.|++||+++
T Consensus       822 s~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~  889 (1057)
T PLN02919        822 SYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK  889 (1057)
T ss_pred             CCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence            889999999998776543222111000 0000011123577899999999888888899999999863

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.01  E-value=7.9e-09  Score=71.24  Aligned_cols=85  Identities=18%  Similarity=0.242  Sum_probs=70.2

Q ss_pred             eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeee-cCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCC
Q 038439           49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTF-RGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEIS  126 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~  126 (179)
                      +-+|-..+..++|+|| .+++++..|..||+-.....-.+..+ -+|...|..++.-++ ..|++++.|++|++||++++
T Consensus       147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sg  225 (390)
T KOG3914|consen  147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSG  225 (390)
T ss_pred             hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccC
Confidence            6688899999999999 99999999999999776654444443 468999999998764 45899999999999999999


Q ss_pred             cccccccc
Q 038439          127 KPVTWHRF  134 (179)
Q Consensus       127 ~~~~~~~~  134 (179)
                      +.+..+.+
T Consensus       226 k~L~t~dl  233 (390)
T KOG3914|consen  226 KLLDTCDL  233 (390)
T ss_pred             Ccccccch
Confidence            88765543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.00  E-value=2.1e-09  Score=73.03  Aligned_cols=144  Identities=11%  Similarity=0.188  Sum_probs=99.3

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-CCCcee----------------eecccCceeEEEEee-C-
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-QSTAPC----------------VHGHKKAVSYVKFLS-N-   64 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~----------------~~~~~~~i~~~~~~~-~-   64 (179)
                      ..|-+-|++++.. +.+..++.|.++.|+..++ ++..| +.++.+                .--|...|+++.... + 
T Consensus       234 qqv~L~nvetg~~-qsf~sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~  311 (425)
T KOG2695|consen  234 QQVLLTNVETGHQ-QSFQSKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQ  311 (425)
T ss_pred             ceeEEEEeecccc-cccccchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhcccc
Confidence            3455555555532 3455678899999998774 55555 444433                223566777777665 3 


Q ss_pred             CeEEEecCCCcEEEEecCCCcc---eeeecCCCCCeEE--EEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCC
Q 038439           65 DELASASTDSTLRLWDVKENLP---VRTFRGHMNEKNF--VGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDM  139 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~~v~~--~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~  139 (179)
                      .+|++.+.+|.|++||++.-++   +.++.+|...-.-  +...+....+++++.|...++|.++.+..+.+.++.....
T Consensus       312 q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~  391 (425)
T KOG2695|consen  312 QKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSAS  391 (425)
T ss_pred             ceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccc
Confidence            7899999999999999997666   8888888543222  3345566788889999999999999999888776643321


Q ss_pred             CCCcccCCcceEEEEEEc
Q 038439          140 DDTDEDAGSYFISAVCWK  157 (179)
Q Consensus       140 ~~~~~~~~~~~i~~~~~~  157 (179)
                              +..+.+++|.
T Consensus       392 --------e~d~~sv~~~  401 (425)
T KOG2695|consen  392 --------EVDIPSVAFD  401 (425)
T ss_pred             --------cccccceehh
Confidence                    3356666664

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.00  E-value=1.6e-09  Score=51.34  Aligned_cols=32  Identities=34%  Similarity=0.733  Sum_probs=31.1

Q ss_pred             eecccCceeEEEEeeC-CeEEEecCCCcEEEEe
Q 038439           49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWD   80 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd   80 (179)
                      +.+|...|++++|+|+ .++++++.|+.|++||
T Consensus         7 ~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    7 FRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            8899999999999999 9999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.00  E-value=9.9e-07  Score=62.50  Aligned_cols=167  Identities=11%  Similarity=0.127  Sum_probs=104.1

Q ss_pred             CccEEEEEc--CCcee--EEeecCCCceeEEEEcCCCCeEEEEeCC---Ccee----eec-------------ccCceeE
Q 038439            3 YGKVKVWCT--RQEAS--VLNIDMKANICCVKYNPGSSNYIAKYQS---TAPC----VHG-------------HKKAVSY   58 (179)
Q Consensus         3 d~~i~vwd~--~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~----~~~-------------~~~~i~~   58 (179)
                      .+.|.+|++  .+++.  +..+.......-++++|+++.++++...   ...+    +..             ....-..
T Consensus        12 ~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~   91 (345)
T PF10282_consen   12 GGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH   91 (345)
T ss_dssp             STEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred             CCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence            478888887  44443  3334456678889999999888877632   1111    111             1223346


Q ss_pred             EEEeeC-CeEEEec-CCCcEEEEecCC-Ccceee---ec----------CCCCCeEEEEEeeCCCEEEEecc-CCcEEEE
Q 038439           59 VKFLSN-DELASAS-TDSTLRLWDVKE-NLPVRT---FR----------GHMNEKNFVGLTVNSEYIACGSE-SNEVYVY  121 (179)
Q Consensus        59 ~~~~~~-~~l~~~~-~d~~v~iwd~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~~~~~~~-d~~v~vw  121 (179)
                      ++++|+ ++++++. .++.|.++++.. +.....   +.          .......++.++|+++++++... ...|.+|
T Consensus        92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~  171 (345)
T PF10282_consen   92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY  171 (345)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred             EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence            778888 7777766 588999999986 332221   21          11244678999999998876533 4579999


Q ss_pred             EcCCCcc-c-cccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEeec
Q 038439          122 HKEISKP-V-TWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVLA  178 (179)
Q Consensus       122 d~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~  178 (179)
                      ++..... + .......+        . ....+.+.|+|+++++++... ++.|.++++.
T Consensus       172 ~~~~~~~~l~~~~~~~~~--------~-G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~  222 (345)
T PF10282_consen  172 DIDDDTGKLTPVDSIKVP--------P-GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD  222 (345)
T ss_dssp             EE-TTS-TEEEEEEEECS--------T-TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEeCCCceEEEeeccccc--------c-CCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence            9977542 2 11111101        0 567899999999998877665 7789998875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.99  E-value=1.1e-07  Score=68.92  Aligned_cols=74  Identities=15%  Similarity=0.205  Sum_probs=61.0

Q ss_pred             cccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCC
Q 038439           51 GHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEIS  126 (179)
Q Consensus        51 ~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~  126 (179)
                      .....+.+.+++|+ ..++.|+.||.|.+||...+.  ..+....-.+..++|+|+|..+++|+..|.+.+||+.-+
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe--eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            35567889999999 999999999999999987653  222223445788999999999999999999999998654

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.99  E-value=3.8e-09  Score=69.22  Aligned_cols=121  Identities=17%  Similarity=0.182  Sum_probs=82.0

Q ss_pred             CceeEEEEeeC--CeEEEecCCCcEEEEecCCC-cceeeecCCCCCeEEEEEee-CCCEEEEeccCCcEEEEEcCCCccc
Q 038439           54 KAVSYVKFLSN--DELASASTDSTLRLWDVKEN-LPVRTFRGHMNEKNFVGLTV-NSEYIACGSESNEVYVYHKEISKPV  129 (179)
Q Consensus        54 ~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~v~vwd~~~~~~~  129 (179)
                      ..|.+++-+|.  ..+++|+.||.+.+||.+.. .+...++.|..+++.+.|+| ++..|+++++||.+.-||..+.-.-
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~  259 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLS  259 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEE
Confidence            34888888888  67888999999999999875 34556788999999999999 5788999999999999998742111


Q ss_pred             --------cccccCCCCCCCC----cccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439          130 --------TWHRFSSPDMDDT----DEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       130 --------~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  176 (179)
                              ..+-...+...+.    ....-...|+++  .--|..|++|+.-+-|++++
T Consensus       260 i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sinsf--DV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  260 ISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSF--DVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             ecCccccccccccCCcccceEeeeccccccceeeeee--eccCceEEeccccceEEEec
Confidence                    0000000000000    000002233333  33577899999999998875

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.98  E-value=1.3e-06  Score=59.89  Aligned_cols=173  Identities=13%  Similarity=0.120  Sum_probs=106.3

Q ss_pred             CCccEEEEEcCC--ceeEEeec---CCCceeEEEEcCCCCeEEEEe------------CCCcee----eecccCc-----
Q 038439            2 AYGKVKVWCTRQ--EASVLNID---MKANICCVKYNPGSSNYIAKY------------QSTAPC----VHGHKKA-----   55 (179)
Q Consensus         2 ~d~~i~vwd~~~--~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~------------~~~~~~----~~~~~~~-----   55 (179)
                      ++|.|--|.+..  |+....-+   ...+...++++++++.++++.            ..+...    ...|.+.     
T Consensus        62 ~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~r  141 (346)
T COG2706          62 EEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHER  141 (346)
T ss_pred             CcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCcc
Confidence            456666666553  44332221   234458899999996665554            112221    3445555     


Q ss_pred             -----eeEEEEeeC-CeEEEecC-CCcEEEEecCCCccee----eecCCCCCeEEEEEeeCCCEEEEecc-CCcEEEEEc
Q 038439           56 -----VSYVKFLSN-DELASAST-DSTLRLWDVKENLPVR----TFRGHMNEKNFVGLTVNSEYIACGSE-SNEVYVYHK  123 (179)
Q Consensus        56 -----i~~~~~~~~-~~l~~~~~-d~~v~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~-d~~v~vwd~  123 (179)
                           +....+.|+ +++++... -..|.+|++..+++..    .+ ......+.|.|+|++++.+..++ +++|.+|..
T Consensus       142 Q~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y  220 (346)
T COG2706         142 QESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEY  220 (346)
T ss_pred             ccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEE
Confidence                 778889999 67777653 4479999999775432    22 23456789999999999766554 899999998


Q ss_pred             CCC-ccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEeec
Q 038439          124 EIS-KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVLA  178 (179)
Q Consensus       124 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~  178 (179)
                      ... ..+..++.-.. +...  ..+......+..++||++|+++.. ...|-+|.+.
T Consensus       221 ~~~~g~~~~lQ~i~t-lP~d--F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~  274 (346)
T COG2706         221 NPAVGKFEELQTIDT-LPED--FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD  274 (346)
T ss_pred             cCCCceEEEeeeecc-Cccc--cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            873 22111111000 0001  112556778899999999998776 2356666543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.98  E-value=4e-07  Score=65.93  Aligned_cols=157  Identities=4%  Similarity=-0.022  Sum_probs=90.2

Q ss_pred             cEEEEEcCCceeEEeecCCCceeEEEEcCCCCe-EEEEe-C------------CCcee-eecccCceeEEEEeeC-CeEE
Q 038439            5 KVKVWCTRQEASVLNIDMKANICCVKYNPGSSN-YIAKY-Q------------STAPC-VHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         5 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~-~------------~~~~~-~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      .|.+-|............ +......|+|+|+. ++.+. .            +++.. +....+......|+|| ..++
T Consensus       170 ~l~~~d~dg~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la  248 (419)
T PRK04043        170 NIVLADYTLTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLL  248 (419)
T ss_pred             eEEEECCCCCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEE
Confidence            344445443332222233 47889999999975 44444 1            11111 2223344556789999 5544


Q ss_pred             -EecCC--CcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc-CC--cEEEEEcCCCccccccccCCCCCCCC
Q 038439           69 -SASTD--STLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE-SN--EVYVYHKEISKPVTWHRFSSPDMDDT  142 (179)
Q Consensus        69 -~~~~d--~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~--~v~vwd~~~~~~~~~~~~~~~~~~~~  142 (179)
                       +.+.+  ..|.++|+..++ ...+..+........|+|||+.|+..+. .+  .|.+.|+.+++...... .       
T Consensus       249 ~~~~~~g~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~-------  319 (419)
T PRK04043        249 LTMAPKGQPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-H-------  319 (419)
T ss_pred             EEEccCCCcEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-C-------
Confidence             44434  467777887765 3444433333345689999988765543 23  57788887766532211 1       


Q ss_pred             cccCCcceEEEEEEccCCCeEEEEeCC---------CcEEEEeec
Q 038439          143 DEDAGSYFISAVCWKSDSPTMLTANSQ---------GTIKVLVLA  178 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~iwd~~  178 (179)
                           ..  ....|+|+|+.|+.....         ..|.+.|+.
T Consensus       320 -----g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~  357 (419)
T PRK04043        320 -----GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTN  357 (419)
T ss_pred             -----CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECC
Confidence                 11  124899999988776653         256666654

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.97  E-value=2.8e-07  Score=66.62  Aligned_cols=122  Identities=16%  Similarity=0.154  Sum_probs=97.6

Q ss_pred             CCccEEEEEcCCceeEEeec---CCCceeEEEEcCCCCeEEEEeCC----------Ccee--eecccCceeEEEEeeC-C
Q 038439            2 AYGKVKVWCTRQEASVLNID---MKANICCVKYNPGSSNYIAKYQS----------TAPC--VHGHKKAVSYVKFLSN-D   65 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~----------~~~~--~~~~~~~i~~~~~~~~-~   65 (179)
                      ..|.|-+|++..++.-..+.   |.++|.++.++.+-..+..+|..          .+.+  ..+....+.+++++|| .
T Consensus        78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~  157 (541)
T KOG4547|consen   78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK  157 (541)
T ss_pred             CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence            35789999999998877774   88999999999888777777722          2222  5556667888999999 8


Q ss_pred             eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeC-----CCEEEEe-ccCCcEEEEEcCC
Q 038439           66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVN-----SEYIACG-SESNEVYVYHKEI  125 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~-~~d~~v~vwd~~~  125 (179)
                      .+++++  +.|++||+++++.+..|.+|.++|+++.|-.+     |.+++++ ..+..+.+|-++.
T Consensus       158 ~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  158 ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            888887  58999999999999999999999999999876     7776654 4466678887765

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.96  E-value=5.5e-07  Score=60.04  Aligned_cols=153  Identities=14%  Similarity=0.104  Sum_probs=90.9

Q ss_pred             eeEEEEcCCCCeEEEEeCC----------Ccee--eec-------ccCceeEEEEeeC-------CeEEEecCCCcEEEE
Q 038439           26 ICCVKYNPGSSNYIAKYQS----------TAPC--VHG-------HKKAVSYVKFLSN-------DELASASTDSTLRLW   79 (179)
Q Consensus        26 v~~~~~~~~~~~~~~~~~~----------~~~~--~~~-------~~~~i~~~~~~~~-------~~l~~~~~d~~v~iw   79 (179)
                      =+-++||||+ .++|.++.          +..+  +..       -...|..+.|.+-       ..|+.-...|.++-|
T Consensus        46 WRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   46 WRKLAWSPDC-TLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             heEEEECCCC-cEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            4679999998 56666521          1222  111       1234555555432       256667777777776


Q ss_pred             ecCC-----Ccceeeec--C-CCCCeEEEEEeeCCCEEEEecc-CC----------cEEEEEcCCCccccccccCC--CC
Q 038439           80 DVKE-----NLPVRTFR--G-HMNEKNFVGLTVNSEYIACGSE-SN----------EVYVYHKEISKPVTWHRFSS--PD  138 (179)
Q Consensus        80 d~~~-----~~~~~~~~--~-~~~~v~~~~~~~~~~~~~~~~~-d~----------~v~vwd~~~~~~~~~~~~~~--~~  138 (179)
                      -+..     .+....+.  . ....|.++.++|..+.|++|+. ..          -+..|.+-++.+........  ..
T Consensus       125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~  204 (282)
T PF15492_consen  125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDI  204 (282)
T ss_pred             EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccc
Confidence            6532     22233332  2 3668999999998888776653 11          26678776654432211100  00


Q ss_pred             -----------CCC----CcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          139 -----------MDD----TDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       139 -----------~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                                 ...    .........|..|..+|||+.|++...+|.|.+|++.+
T Consensus       205 ~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs  260 (282)
T PF15492_consen  205 TASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS  260 (282)
T ss_pred             cccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence                       000    00111256799999999999999999999999999863

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.94  E-value=2.3e-09  Score=79.44  Aligned_cols=118  Identities=18%  Similarity=0.365  Sum_probs=91.4

Q ss_pred             eecccCceeEEEEeeC--CeEEEecCCCcEEEEecCCC-cceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCC
Q 038439           49 VHGHKKAVSYVKFLSN--DELASASTDSTLRLWDVKEN-LPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEI  125 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~  125 (179)
                      +.+|...|+.+.|+|.  ..+++++-|..+..||+++. .++..+.........++|+-....+.+.+..+.|.+||++.
T Consensus       110 lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~  189 (1081)
T KOG0309|consen  110 LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRK  189 (1081)
T ss_pred             EecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccC
Confidence            7899999999999999  78999999999999999974 45556655666678899998655566667778899999997


Q ss_pred             Cc-cccccccCCCCCCCCcccCCcceEEEEEEcc-CCCeEEEEeCCCcEEEEeec
Q 038439          126 SK-PVTWHRFSSPDMDDTDEDAGSYFISAVCWKS-DSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       126 ~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~  178 (179)
                      +. ++...+.  +          -..++.+.|.. ....+++.+.|++|+.||..
T Consensus       190 gs~pl~s~K~--~----------vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~  232 (1081)
T KOG0309|consen  190 GSTPLCSLKG--H----------VSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS  232 (1081)
T ss_pred             CCcceEEecc--c----------ceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence            64 3433321  1          55677787765 34567889999999999854

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.93  E-value=4.7e-09  Score=75.79  Aligned_cols=134  Identities=17%  Similarity=0.167  Sum_probs=93.5

Q ss_pred             CCCccEEEEEcCC-------ceeEEeec-CCCceeEEEEcCCCCeEEEEeCC---------Ccee----eecccCceeEE
Q 038439            1 MAYGKVKVWCTRQ-------EASVLNID-MKANICCVKYNPGSSNYIAKYQS---------TAPC----VHGHKKAVSYV   59 (179)
Q Consensus         1 ~~d~~i~vwd~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~---------~~~~----~~~~~~~i~~~   59 (179)
                      |.|.+|++|.++.       ..+..+++ |+.+|.++.|-.+-+ .++..+.         ++++    -....+.+..+
T Consensus       754 SkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~i  832 (1034)
T KOG4190|consen  754 SKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNI  832 (1034)
T ss_pred             cCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeeeccCcceeecccccchhHhhhcCcccCCCcee
Confidence            5799999999763       23566665 899999999988874 4444321         2222    11112223333


Q ss_pred             EEeeC---CeE-EEecCCCcEEEEecCCCcceeeec-----CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccc
Q 038439           60 KFLSN---DEL-ASASTDSTLRLWDVKENLPVRTFR-----GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVT  130 (179)
Q Consensus        60 ~~~~~---~~l-~~~~~d~~v~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~  130 (179)
                      ...++   ..+ +.++...+|+++|.+..+....++     +....+++++..+.|+.++++-..|.+.+.|.++|+.+.
T Consensus       833 kcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vIN  912 (1034)
T KOG4190|consen  833 KCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVIN  912 (1034)
T ss_pred             EecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceec
Confidence            33343   333 344778999999999877665554     234568899999999999999999999999999999888


Q ss_pred             ccccC
Q 038439          131 WHRFS  135 (179)
Q Consensus       131 ~~~~~  135 (179)
                      .++..
T Consensus       913 swrpm  917 (1034)
T KOG4190|consen  913 SWRPM  917 (1034)
T ss_pred             cCCcc
Confidence            77643

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.92  E-value=4.5e-07  Score=64.61  Aligned_cols=117  Identities=15%  Similarity=0.245  Sum_probs=94.0

Q ss_pred             eecccCceeEEEEeeC-CeEEEecCCC-cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCC
Q 038439           49 VHGHKKAVSYVKFLSN-DELASASTDS-TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEIS  126 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~-~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~  126 (179)
                      .-+|...|.-..+.-+ .-++.|..|| .+-|+|.+.++ +..+...-+.|.++..+|+|++++++.....+.+.|+.++
T Consensus       355 qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididng  433 (668)
T COG4946         355 QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNG  433 (668)
T ss_pred             EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCC
Confidence            3456777877777777 7788888888 89999999876 4455566788999999999999999999999999999998


Q ss_pred             ccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCC----cEEEEeec
Q 038439          127 KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG----TIKVLVLA  178 (179)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~iwd~~  178 (179)
                      .....-+..            ..-|+...|+|+++++|-+-.+|    .|+++|+.
T Consensus       434 nv~~idkS~------------~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~  477 (668)
T COG4946         434 NVRLIDKSE------------YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD  477 (668)
T ss_pred             CeeEecccc------------cceeEEEEEcCCceeEEEecCcceeeeeEEEEecC
Confidence            764332211            56799999999999999877766    48888865

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.91  E-value=1.5e-08  Score=81.66  Aligned_cols=129  Identities=9%  Similarity=0.144  Sum_probs=97.2

Q ss_pred             eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecC-CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCC
Q 038439           49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRG-HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEIS  126 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~  126 (179)
                      ++.+-..+.++.-+|. .+.+||+.||.|++|....+..+..++. ..+.++.+.|+.+|+.+..+..||.+.+|... .
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence            4444556777777788 8999999999999999988887776652 34778899999999999999999999999876 2


Q ss_pred             ccccccccCCC--------------------------------CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEE
Q 038439          127 KPVTWHRFSSP--------------------------------DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV  174 (179)
Q Consensus       127 ~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  174 (179)
                      ++...++....                                .+.-.....|.+.++++++.|..+.|++|+.+|.|++
T Consensus      2283 k~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l 2362 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCL 2362 (2439)
T ss_pred             cceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEE
Confidence            22221111000                                1111112345788999999999999999999999999


Q ss_pred             Eeec
Q 038439          175 LVLA  178 (179)
Q Consensus       175 wd~~  178 (179)
                      ||++
T Consensus      2363 ~D~r 2366 (2439)
T KOG1064|consen 2363 FDIR 2366 (2439)
T ss_pred             eehH
Confidence            9985

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.90  E-value=8.7e-07  Score=58.78  Aligned_cols=117  Identities=5%  Similarity=-0.024  Sum_probs=83.2

Q ss_pred             eeEEEEeeC-CeEEEecCCCcEEEEecCC-Ccceee--ecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccc
Q 038439           56 VSYVKFLSN-DELASASTDSTLRLWDVKE-NLPVRT--FRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTW  131 (179)
Q Consensus        56 i~~~~~~~~-~~l~~~~~d~~v~iwd~~~-~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~  131 (179)
                      +.+++++++ .++++.+....|-.|.+.. ++.+..  .......-.+..|+.....+|++..||++.|||++.......
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~  240 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA  240 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence            778899999 8888888889999998864 332222  222333456788999999999999999999999997544332


Q ss_pred             cccCCCCCCCCcccCCcceEEEEEEccCCC--eEEEEeCCCcEEEEeecC
Q 038439          132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSP--TMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~iwd~~~  179 (179)
                      ....       ...+|.+.+..+.|++-|.  +|+..-.=+.+++.|+++
T Consensus       241 ~~ss-------trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~  283 (344)
T KOG4532|consen  241 EISS-------TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN  283 (344)
T ss_pred             hhcc-------cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence            2211       1234588999999998553  455555556788888764

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.87  E-value=2.1e-08  Score=74.46  Aligned_cols=144  Identities=17%  Similarity=0.240  Sum_probs=109.7

Q ss_pred             cCCCceeEEEEcCCCCeEEEEe-------------------CCC----cee-----eecccCceeEEEEeeC-CeEEEec
Q 038439           21 DMKANICCVKYNPGSSNYIAKY-------------------QST----APC-----VHGHKKAVSYVKFLSN-DELASAS   71 (179)
Q Consensus        21 ~~~~~v~~~~~~~~~~~~~~~~-------------------~~~----~~~-----~~~~~~~i~~~~~~~~-~~l~~~~   71 (179)
                      +.+....+++|+... .++++|                   ..+    ..+     +.+|++.|..+.|+.. +.|-++.
T Consensus        12 PnnvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD   90 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD   90 (1189)
T ss_pred             CCCceEEEEEEcccC-CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence            345667899999887 455555                   011    111     7899999999999998 8888888


Q ss_pred             CCCcEEEEecCCCcceeeecC--CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcc
Q 038439           72 TDSTLRLWDVKENLPVRTFRG--HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSY  149 (179)
Q Consensus        72 ~d~~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (179)
                      .+|.|.+|-+-.+.....+..  ..+.|.+++|+.+|..|....+||.|.+=.+...+ +.-..+.            ..
T Consensus        91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLk------------g~  157 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWGKELK------------GQ  157 (1189)
T ss_pred             CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecchhcc------------hh
Confidence            999999999988765544432  45678999999999999999999999887776443 3222332            33


Q ss_pred             eEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          150 FISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       150 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ....+.|++|.+.++.+-..|.+++||.+
T Consensus       158 ~l~hv~ws~D~~~~Lf~~ange~hlydnq  186 (1189)
T KOG2041|consen  158 LLAHVLWSEDLEQALFKKANGETHLYDNQ  186 (1189)
T ss_pred             eccceeecccHHHHHhhhcCCcEEEeccc
Confidence            45678899999999889999999999853

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.86  E-value=5.9e-09  Score=75.28  Aligned_cols=129  Identities=18%  Similarity=0.252  Sum_probs=92.8

Q ss_pred             eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCC-------CcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEE
Q 038439           49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKE-------NLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYV  120 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~v  120 (179)
                      +.+|...|..+.-..+ +-+++++.|++|++|.++.       ..+..++..|..+|..+.|-.+.++++++  ||-+++
T Consensus       731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHl  808 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHL  808 (1034)
T ss_pred             ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCccee
Confidence            7889999988876666 8999999999999999874       13556788899999999999998888755  788999


Q ss_pred             EEcCCCccccccccCCC---------------------------------C-----CCCCcc--cCCcceEEEEEEccCC
Q 038439          121 YHKEISKPVTWHRFSSP---------------------------------D-----MDDTDE--DAGSYFISAVCWKSDS  160 (179)
Q Consensus       121 wd~~~~~~~~~~~~~~~---------------------------------~-----~~~~~~--~~~~~~i~~~~~~~~~  160 (179)
                      ||.--++++........                                 .     .+....  .....-+.+++..+.|
T Consensus       809 WDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~G  888 (1034)
T KOG4190|consen  809 WDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKG  888 (1034)
T ss_pred             ecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCc
Confidence            99766655442221110                                 0     000000  0012346677888889


Q ss_pred             CeEEEEeCCCcEEEEeecC
Q 038439          161 PTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       161 ~~l~~~~~dg~i~iwd~~~  179 (179)
                      ++++++-..|.|.+.|.++
T Consensus       889 N~lAa~LSnGci~~LDaR~  907 (1034)
T KOG4190|consen  889 NKLAAALSNGCIAILDARN  907 (1034)
T ss_pred             chhhHHhcCCcEEEEecCC
Confidence            9999998899988888664

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.86  E-value=4.4e-08  Score=70.97  Aligned_cols=107  Identities=12%  Similarity=0.245  Sum_probs=76.0

Q ss_pred             eEEEEeeC--CeEEEe----cCCCc----EEEEecCCCcce----eeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEE
Q 038439           57 SYVKFLSN--DELASA----STDST----LRLWDVKENLPV----RTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYH  122 (179)
Q Consensus        57 ~~~~~~~~--~~l~~~----~~d~~----v~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd  122 (179)
                      .++.|+-.  ..+.+.    +.+|.    -++|++...+..    ..+ ...+.+.+.+++|+.+.++.|+.||.|.+||
T Consensus       209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD  287 (545)
T PF11768_consen  209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILYD  287 (545)
T ss_pred             EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence            45666654  444432    33443    345666544321    122 3467889999999999999999999999999


Q ss_pred             cCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          123 KEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ...+.-... ..             .-.++.++|+|+|..+++|+..|.+.+||+.
T Consensus       288 ~~~~~t~~~-ka-------------~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  288 TTRGVTLLA-KA-------------EFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             cCCCeeeee-ee-------------cccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            876533222 11             4457889999999999999999999999974

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.83  E-value=9.7e-07  Score=69.59  Aligned_cols=113  Identities=10%  Similarity=0.106  Sum_probs=74.6

Q ss_pred             ceeEEEEeeC-CeEEEecC---C---CcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc---CCcEEEEEcC
Q 038439           55 AVSYVKFLSN-DELASAST---D---STLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE---SNEVYVYHKE  124 (179)
Q Consensus        55 ~i~~~~~~~~-~~l~~~~~---d---~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---d~~v~vwd~~  124 (179)
                      .-..|+|-.| .++++.+.   .   ..+|||+-+ |++...-..-.+--..++|.|.|++||+...   ...|.+|.. 
T Consensus       211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-  288 (928)
T PF04762_consen  211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-  288 (928)
T ss_pred             CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-
Confidence            3456889999 78777664   2   579999965 6544433333333457899999999998764   334555553 


Q ss_pred             CCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          125 ISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      +|-.-..+.+...        .....|..+.|++++..|+....|. |.+|-..
T Consensus       289 NGLrhgeF~l~~~--------~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~  333 (928)
T PF04762_consen  289 NGLRHGEFTLRFD--------PEEEKVIELAWNSDSEILAVWLEDR-VQLWTRS  333 (928)
T ss_pred             CCcEeeeEecCCC--------CCCceeeEEEECCCCCEEEEEecCC-ceEEEee
Confidence            3433333333210        1156789999999999999987665 9999764

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.82  E-value=1.4e-07  Score=71.73  Aligned_cols=157  Identities=13%  Similarity=0.168  Sum_probs=108.5

Q ss_pred             cEEEEEcCCceeEEeecCC-CceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeCCeEEEe
Q 038439            5 KVKVWCTRQEASVLNIDMK-ANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSNDELASA   70 (179)
Q Consensus         5 ~i~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~~~l~~~   70 (179)
                      .+..+|+++.+..+..... +.|.-++.+.   +++.+|           ++.+.+  +.+|++.|..+.... +.|+++
T Consensus       158 ~li~~Dl~~~~e~r~~~v~a~~v~imR~Nn---r~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~G-NlLitC  233 (1118)
T KOG1275|consen  158 KLIHIDLNTEKETRTTNVSASGVTIMRYNN---RNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQG-NLLITC  233 (1118)
T ss_pred             heeeeecccceeeeeeeccCCceEEEEecC---cEEEeecccceEEeecCCcCceeeeeeccccceeeeeccC-CeEEEe
Confidence            3455666666665555533 3577777653   456666           334445  889999998876643 677777


Q ss_pred             cC---------CCcEEEEecCCCcceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCC-Ccc-ccccccCCCC
Q 038439           71 ST---------DSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEI-SKP-VTWHRFSSPD  138 (179)
Q Consensus        71 ~~---------d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~-~~~-~~~~~~~~~~  138 (179)
                      +.         |..|+|||++.-+.+..+.-+..+ ..+.|.|. ...+++++..|+..+-|..+ +.+ ...+..... 
T Consensus       234 G~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~-  311 (1118)
T KOG1275|consen  234 GYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPN-  311 (1118)
T ss_pred             ecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccC-
Confidence            53         567899999988777766554443 56788886 55688888899999999433 222 111211111 


Q ss_pred             CCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439          139 MDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       139 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  176 (179)
                               +..+..++++++++.++.|..+|.|.+|-
T Consensus       312 ---------~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  312 ---------GSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ---------CCcceeEEecCCCceEEEecccCcEeeec
Confidence                     55699999999999999999999999995

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.82  E-value=9.3e-08  Score=71.18  Aligned_cols=111  Identities=13%  Similarity=0.167  Sum_probs=91.2

Q ss_pred             CceeEEEEeeC-CeEEEecCCCcEEEEecCCCc---------------ceeeecCCCCCeEEEEEeeCCCEEEEeccCCc
Q 038439           54 KAVSYVKFLSN-DELASASTDSTLRLWDVKENL---------------PVRTFRGHMNEKNFVGLTVNSEYIACGSESNE  117 (179)
Q Consensus        54 ~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~  117 (179)
                      ....|++|+.. ++++.|+.||.+++..+.+..               .-+++.+|...|.-+.|+.+.+.+-+...+|.
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl   94 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL   94 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence            45789999999 999999999999998776421               12457789999999999999999999999999


Q ss_pred             EEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEE
Q 038439          118 VYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV  174 (179)
Q Consensus       118 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  174 (179)
                      |.+|-+-.+.-.........          .+.|.+++|+.+|..+.....||.|.+
T Consensus        95 IiVWmlykgsW~EEMiNnRn----------KSvV~SmsWn~dG~kIcIvYeDGavIV  141 (1189)
T KOG2041|consen   95 IIVWMLYKGSWCEEMINNRN----------KSVVVSMSWNLDGTKICIVYEDGAVIV  141 (1189)
T ss_pred             EEEEeeecccHHHHHhhCcC----------ccEEEEEEEcCCCcEEEEEEccCCEEE
Confidence            99999988875544433222          678999999999999998888887755

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.80  E-value=1.1e-08  Score=69.57  Aligned_cols=115  Identities=9%  Similarity=0.095  Sum_probs=83.7

Q ss_pred             cCceeEEEEeeC-CeEEEecCCCcEEEEecCCC-----cceeeecCCCCCeEEEEEee-CCCEEEEeccCCcEEEEEcCC
Q 038439           53 KKAVSYVKFLSN-DELASASTDSTLRLWDVKEN-----LPVRTFRGHMNEKNFVGLTV-NSEYIACGSESNEVYVYHKEI  125 (179)
Q Consensus        53 ~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~-----~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~v~vwd~~~  125 (179)
                      ...|.++.|... ++++.|+..|.|...|++.+     .+.+.+. |.+.|+++..-. +++++++.+.+|+|++||++.
T Consensus       252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~  330 (425)
T KOG2695|consen  252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA  330 (425)
T ss_pred             chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence            345666777776 89999999999999999864     3444443 788888887554 688999999999999999998


Q ss_pred             Ccc---ccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          126 SKP---VTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       126 ~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      -+.   +.+++  .|..        ...-.-+...+....+++++.|-..+||.+.
T Consensus       331 ~K~~~~V~qYe--GHvN--------~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~  376 (425)
T KOG2695|consen  331 TKCKKSVMQYE--GHVN--------LSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD  376 (425)
T ss_pred             hhcccceeeee--cccc--------cccccccccccccceEEEccCeeEEEEEecc
Confidence            666   44432  2211        1111223345677788889999999999876

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.79  E-value=7.7e-07  Score=66.13  Aligned_cols=171  Identities=9%  Similarity=-0.017  Sum_probs=109.7

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe---CCCcee--eecccCceeEEEEee--------C-CeEE
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY---QSTAPC--VHGHKKAVSYVKFLS--------N-DELA   68 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~i~~~~~~~--------~-~~l~   68 (179)
                      .+.+.+.|.++.+...++.......-++++|+|..+++++   ..+..+  +...... ..+.|++        + .+..
T Consensus       214 ~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d-~~vvfni~~iea~vkdGK~~~  292 (635)
T PRK02888        214 RSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD-WVVVFNIARIEEAVKAGKFKT  292 (635)
T ss_pred             eEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCc-eEEEEchHHHHHhhhCCCEEE
Confidence            3567788888888888887777888999999998887876   223333  2222211 3334433        3 2222


Q ss_pred             EecCCCcEEEEecCC-----CcceeeecCCCCCeEEEEEeeCCCEEEEec-cCCcEEEEEcCCCccccccccCCCCCCCC
Q 038439           69 SASTDSTLRLWDVKE-----NLPVRTFRGHMNEKNFVGLTVNSEYIACGS-ESNEVYVYHKEISKPVTWHRFSSPDMDDT  142 (179)
Q Consensus        69 ~~~~d~~v~iwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~~~  142 (179)
                      .  .++.|.+.|.++     .+.+..+. -......++++|||+++++++ .+..|.|.|+.+.+....-++........
T Consensus       293 V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vva  369 (635)
T PRK02888        293 I--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVA  369 (635)
T ss_pred             E--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEE
Confidence            2  356899999987     34444443 345568899999999977655 48999999998865422111111000000


Q ss_pred             cccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          143 DEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ...- .......+|.++|+...+-.-|..|..||+.
T Consensus       370 evev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~  404 (635)
T PRK02888        370 EPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIE  404 (635)
T ss_pred             eecc-CCCcceEEECCCCCEEEeEeecceeEEEehH
Confidence            0001 3345668899999988888889999999975

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.76  E-value=9.6e-06  Score=65.18  Aligned_cols=119  Identities=13%  Similarity=0.117  Sum_probs=76.1

Q ss_pred             eEEEEeeC--CeEEEecCCCcEEEEecCCCcceeeecC---------------CCCCeEEEEEeeCCCEE-EEeccCCcE
Q 038439           57 SYVKFLSN--DELASASTDSTLRLWDVKENLPVRTFRG---------------HMNEKNFVGLTVNSEYI-ACGSESNEV  118 (179)
Q Consensus        57 ~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~~-~~~~~d~~v  118 (179)
                      ..++++|+  ..+++.+.++.|++||..++... .+.+               .-.....++++|++..+ ++-..++.|
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I  764 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI  764 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence            57899995  55667778899999998776432 2211               01234579999998854 555667999


Q ss_pred             EEEEcCCCcccccc-----------ccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          119 YVYHKEISKPVTWH-----------RFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       119 ~vwd~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ++||+.++......           .+.......  ..........++++++|+.+++-+.+++|++||..
T Consensus       765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g--~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~  833 (1057)
T PLN02919        765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVG--SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPA  833 (1057)
T ss_pred             EEEECCCCcEEEEEecccccCcccccccCCCCch--hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECC
Confidence            99999876532111           000000000  00001234688999999988888889999999975

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.73  E-value=7.2e-08  Score=65.77  Aligned_cols=127  Identities=13%  Similarity=0.132  Sum_probs=85.2

Q ss_pred             eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCccee---eecCC-----CCCeEEEEEeeC-CCEEEEeccCCcE
Q 038439           49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVR---TFRGH-----MNEKNFVGLTVN-SEYIACGSESNEV  118 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~---~~~~~-----~~~v~~~~~~~~-~~~~~~~~~d~~v  118 (179)
                      -.+|+-.|+++.++.| ..+++ +.|-.|.+|++.-...-.   .++.+     ...|++..|+|. .+.++..+..|.|
T Consensus       160 aNaHtyhiNSIS~NsD~Et~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtI  238 (433)
T KOG1354|consen  160 ANAHTYHINSISVNSDKETFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTI  238 (433)
T ss_pred             cccceeEeeeeeecCccceEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcE
Confidence            5678999999999999 66555 557889999987533222   22222     346788899995 6677778889999


Q ss_pred             EEEEcCCCcccc----cccc-CCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          119 YVYHKEISKPVT----WHRF-SSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       119 ~vwd~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ++-|++......    .++. ..+.....+.+. -..|..+.|+++|+++++-..- +|++||++
T Consensus       239 rLcDmR~~aLCd~hsKlfEepedp~~rsffsei-IsSISDvKFs~sGryilsRDyl-tvk~wD~n  301 (433)
T KOG1354|consen  239 RLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEI-ISSISDVKFSHSGRYILSRDYL-TVKLWDLN  301 (433)
T ss_pred             EEeechhhhhhcchhhhhccccCCcchhhHHHH-hhhhhceEEccCCcEEEEeccc-eeEEEecc
Confidence            999999643321    1111 111111111111 3568889999999999876544 79999984

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.71  E-value=7.9e-06  Score=54.72  Aligned_cols=132  Identities=11%  Similarity=0.078  Sum_probs=80.7

Q ss_pred             CCccEEEEEcCCceeEEeecCCCceeEEE--EcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeCCeE
Q 038439            2 AYGKVKVWCTRQEASVLNIDMKANICCVK--YNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSNDEL   67 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~~~l   67 (179)
                      ++|+|..||..+++.+.............  ..+++..+++..          .+++.+  ... ...+.......++.+
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~v   79 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVDGGRV   79 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEETTEE
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeeccccc
Confidence            57999999999999988886532222222  222333555553          345554  221 222211122233667


Q ss_pred             EEecCCCcEEEEecCCCcceeee-cCCC---CCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccccc
Q 038439           68 ASASTDSTLRLWDVKENLPVRTF-RGHM---NEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF  134 (179)
Q Consensus        68 ~~~~~d~~v~iwd~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~  134 (179)
                      +.++.++.+..+|..+++.+... ....   ...........+..++.+..++.|..+|+++|+.+.....
T Consensus        80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~  150 (238)
T PF13360_consen   80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV  150 (238)
T ss_dssp             EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred             ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence            77778889999999999988774 3221   1122333444588888888899999999999988666554

...

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=2.4e-07  Score=67.79  Aligned_cols=92  Identities=13%  Similarity=0.117  Sum_probs=73.7

Q ss_pred             CceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeE-EEEEeeCCCEEEEeccCCcEEEEEcCCCccccc
Q 038439           54 KAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKN-FVGLTVNSEYIACGSESNEVYVYHKEISKPVTW  131 (179)
Q Consensus        54 ~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~  131 (179)
                      -.|.-+.|+|. .++|++..+|.|-+..+. .+.+.++..+...++ +++|.|||+.+++|-.||+|++.|.+++..+..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            35677899999 999999999999888887 566777775666666 999999999999999999999999999887766


Q ss_pred             cccCCCCCCCCcccCCcceEEEEEEc
Q 038439          132 HRFSSPDMDDTDEDAGSYFISAVCWK  157 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~i~~~~~~  157 (179)
                      ..+. .          ...|.++.|.
T Consensus       100 ~~~s-~----------e~~is~~~w~  114 (665)
T KOG4640|consen  100 FLFS-V----------ETDISKGIWD  114 (665)
T ss_pred             cccc-c----------ccchheeecc
Confidence            3221 1          4456666665

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.64  E-value=1.1e-05  Score=57.79  Aligned_cols=136  Identities=10%  Similarity=0.059  Sum_probs=94.2

Q ss_pred             ecCCCceeEEEEcCCCCeEEEEeCCC-----------cee-eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcc
Q 038439           20 IDMKANICCVKYNPGSSNYIAKYQST-----------APC-VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLP   86 (179)
Q Consensus        20 ~~~~~~v~~~~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~   86 (179)
                      +.++..|.-..+.-++..++...+.+           +.- +...-+.|.++..+++ .+++.+.....+.+.|+.++..
T Consensus       356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv  435 (668)
T COG4946         356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV  435 (668)
T ss_pred             cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence            44566677777766654333332222           212 4555677899999999 7788888888999999999876


Q ss_pred             eeeecCCCCCeEEEEEeeCCCEEEEeccCC----cEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCe
Q 038439           87 VRTFRGHMNEKNFVGLTVNSEYIACGSESN----EVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPT  162 (179)
Q Consensus        87 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  162 (179)
                      ...=+...+-|....|+|+++++|-+--+|    .|+++|+.+++....-....             .=.+-+|.|++++
T Consensus       436 ~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta-------------~DfsPaFD~d~ry  502 (668)
T COG4946         436 RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTA-------------YDFSPAFDPDGRY  502 (668)
T ss_pred             eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcc-------------cccCcccCCCCcE
Confidence            555455667799999999999999876665    48999999887654433322             2244567788887


Q ss_pred             EEEEeC
Q 038439          163 MLTANS  168 (179)
Q Consensus       163 l~~~~~  168 (179)
                      |.--+.
T Consensus       503 LYfLs~  508 (668)
T COG4946         503 LYFLSA  508 (668)
T ss_pred             EEEEec
Confidence            765443

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.64  E-value=1.3e-06  Score=65.69  Aligned_cols=139  Identities=16%  Similarity=0.123  Sum_probs=101.4

Q ss_pred             CceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-------------CeEEEecCCCcEEE
Q 038439           24 ANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-------------DELASASTDSTLRL   78 (179)
Q Consensus        24 ~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-------------~~l~~~~~d~~v~i   78 (179)
                      ..-.++.|+|.|  +++-|          .+-+.+  +..|...|+.++|.|-             -.++++...|.|-+
T Consensus        16 sN~~A~Dw~~~G--LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil   93 (1062)
T KOG1912|consen   16 SNRNAADWSPSG--LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL   93 (1062)
T ss_pred             ccccccccCccc--eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence            346788999988  55544          333444  7788999999999874             13667777899999


Q ss_pred             EecCCCcceeeecCCCCCeEEEEEeeC---C-CEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEE
Q 038439           79 WDVKENLPVRTFRGHMNEKNFVGLTVN---S-EYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAV  154 (179)
Q Consensus        79 wd~~~~~~~~~~~~~~~~v~~~~~~~~---~-~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  154 (179)
                      ||+..+..+..+..+..++..+.|-+.   . ..+++-....++-+|+..+|+....+...            .....++
T Consensus        94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys------------~~iLs~f  161 (1062)
T KOG1912|consen   94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS------------HEILSCF  161 (1062)
T ss_pred             EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC------------Ccceeee
Confidence            999988888888888888999998763   4 34566666788999999999987665542            3345667


Q ss_pred             EEcc-CCCeEEEEeCCCcEEEEe
Q 038439          155 CWKS-DSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       155 ~~~~-~~~~l~~~~~dg~i~iwd  176 (179)
                      .+.| |.+.+...+..|.+.+-+
T Consensus       162 ~~DPfd~rh~~~l~s~g~vl~~~  184 (1062)
T KOG1912|consen  162 RVDPFDSRHFCVLGSKGFVLSCK  184 (1062)
T ss_pred             eeCCCCcceEEEEccCceEEEEe
Confidence            7777 666666666666665543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.63  E-value=1e-06  Score=63.80  Aligned_cols=125  Identities=18%  Similarity=0.252  Sum_probs=84.8

Q ss_pred             eeEEEEcCCCCeEEEEeCCCcee----------eecccCceeEEEEeeC-CeEEEecC-----------CCcEEEEecCC
Q 038439           26 ICCVKYNPGSSNYIAKYQSTAPC----------VHGHKKAVSYVKFLSN-DELASAST-----------DSTLRLWDVKE   83 (179)
Q Consensus        26 v~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~~~~~~~~-~~l~~~~~-----------d~~v~iwd~~~   83 (179)
                      =+-+.|||.|.++++.-..|-.+          --.|. .|.-+.|||+ .+|+|=+.           ...++|||+++
T Consensus       213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t  291 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT  291 (698)
T ss_pred             eeeEEecCCceEEEEEeccceeeecCccHHHHHhccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence            35789999996555443322222          11243 4788999999 99988653           25789999999


Q ss_pred             CcceeeecCC--CCCe-EEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCC
Q 038439           84 NLPVRTFRGH--MNEK-NFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDS  160 (179)
Q Consensus        84 ~~~~~~~~~~--~~~v-~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  160 (179)
                      |...+.|...  ...+ .-..||.|++|+|--.. ..|.||+..+..++....+.            -..|....|+|.+
T Consensus       292 G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslk------------i~gIr~FswsP~~  358 (698)
T KOG2314|consen  292 GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLK------------ISGIRDFSWSPTS  358 (698)
T ss_pred             cchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccC------------CccccCcccCCCc
Confidence            9988887652  2222 24689999999987665 56889987765444333322            4467888888887


Q ss_pred             CeEE
Q 038439          161 PTML  164 (179)
Q Consensus       161 ~~l~  164 (179)
                      +.||
T Consensus       359 ~llA  362 (698)
T KOG2314|consen  359 NLLA  362 (698)
T ss_pred             ceEE
Confidence            7665

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.62  E-value=1.3e-05  Score=56.50  Aligned_cols=111  Identities=14%  Similarity=-0.009  Sum_probs=76.0

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCCCceeeecccCceeEEEEeeCCeEEEecCCCcEEEEecCC
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKE   83 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~v~iwd~~~   83 (179)
                      ++|.+.|..+++.+.++........+ ++|+++.++++..                 |.  ..+.-|-.+..|.+||..+
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~-----------------~~--~R~~~G~~~d~V~v~D~~t   86 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHAST-----------------VY--SRIARGKRTDYVEVIDPQT   86 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEec-----------------cc--cccccCCCCCEEEEEECcc
Confidence            66777777777777777654444444 7777755544410                 00  1222333578899999999


Q ss_pred             CcceeeecCCCC-------CeEEEEEeeCCCEEEEec-c-CCcEEEEEcCCCcccccccc
Q 038439           84 NLPVRTFRGHMN-------EKNFVGLTVNSEYIACGS-E-SNEVYVYHKEISKPVTWHRF  134 (179)
Q Consensus        84 ~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~~~-~-d~~v~vwd~~~~~~~~~~~~  134 (179)
                      .+.+..+.....       ....++++|||+++++.. . +..|.+.|+.+++.+.....
T Consensus        87 ~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v  146 (352)
T TIGR02658        87 HLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV  146 (352)
T ss_pred             CcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence            998887764222       233789999999988776 3 68999999999998877665

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=2.2e-06  Score=60.67  Aligned_cols=129  Identities=15%  Similarity=0.128  Sum_probs=91.8

Q ss_pred             eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCC------Ccceeeec---------CCCCCeEEEEEeeCCCEEEEe
Q 038439           49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKE------NLPVRTFR---------GHMNEKNFVGLTVNSEYIACG  112 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~------~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~~  112 (179)
                      -.-|..+|.++.+++. ..+++....|.|.-|....      .+....++         .......++.|+|++..+.+-
T Consensus       140 kklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl  219 (558)
T KOG0882|consen  140 KKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTL  219 (558)
T ss_pred             cccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccccc
Confidence            4458999999999999 8888888899999998773      11111222         123456789999999999999


Q ss_pred             ccCCcEEEEEcCCCccccccccCCC---------------------CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCc
Q 038439          113 SESNEVYVYHKEISKPVTWHRFSSP---------------------DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGT  171 (179)
Q Consensus       113 ~~d~~v~vwd~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  171 (179)
                      +.|..|++++.++++.++.+.-...                     ..+.....++...-..++|...+++|+-|+-=| 
T Consensus       220 ~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-  298 (558)
T KOG0882|consen  220 NPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-  298 (558)
T ss_pred             CcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-
Confidence            9999999999999987665431111                     111122233344556788999999998887765 


Q ss_pred             EEEEeec
Q 038439          172 IKVLVLA  178 (179)
Q Consensus       172 i~iwd~~  178 (179)
                      |++.++.
T Consensus       299 ikvin~~  305 (558)
T KOG0882|consen  299 IKVINLD  305 (558)
T ss_pred             EEEEEee
Confidence            7777664

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.60  E-value=2.1e-07  Score=69.47  Aligned_cols=108  Identities=19%  Similarity=0.337  Sum_probs=83.4

Q ss_pred             cCCCceeEEEEcCCCCeEEEEe------------CCCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCC-
Q 038439           21 DMKANICCVKYNPGSSNYIAKY------------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKEN-   84 (179)
Q Consensus        21 ~~~~~v~~~~~~~~~~~~~~~~------------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~-   84 (179)
                      .|...|+.+-|+|+.+.++++.            ....++  ...-......++|+.. ..+++.+....|++||.+.+ 
T Consensus       112 ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs  191 (1081)
T KOG0309|consen  112 GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS  191 (1081)
T ss_pred             cCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCC
Confidence            3788999999999998888887            223333  3333344567889887 77777788889999999875 


Q ss_pred             cceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCcc
Q 038439           85 LPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISKP  128 (179)
Q Consensus        85 ~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~  128 (179)
                      .++..+++|...++.++|+.- ...+.+++.|++|+.||......
T Consensus       192 ~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~  236 (1081)
T KOG0309|consen  192 TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT  236 (1081)
T ss_pred             cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc
Confidence            577888999999999998763 44678899999999999876543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.57  E-value=4e-06  Score=60.14  Aligned_cols=121  Identities=11%  Similarity=0.175  Sum_probs=80.9

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-CC---------Ccee-eecccCceeEEEEeeC-CeEEEec
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-QS---------TAPC-VHGHKKAVSYVKFLSN-DELASAS   71 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~---------~~~~-~~~~~~~i~~~~~~~~-~~l~~~~   71 (179)
                      .+++|+++....+.....-.++|...+|+|.++.+.++. -.         ...+ +......=+.+.|+|. ++++.++
T Consensus       255 snLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~ag  334 (561)
T COG5354         255 SNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAG  334 (561)
T ss_pred             ceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccceEEecCCcccccccccCcccEEEEec
Confidence            456777766444433345688999999999998776665 11         1112 2233333456778999 8888877


Q ss_pred             CC---CcEEEEecCCCccee-eecCCCCCeEEEEEeeCCCEEEEecc------CCcEEEEEcCCC
Q 038439           72 TD---STLRLWDVKENLPVR-TFRGHMNEKNFVGLTVNSEYIACGSE------SNEVYVYHKEIS  126 (179)
Q Consensus        72 ~d---~~v~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~------d~~v~vwd~~~~  126 (179)
                      .|   |.+-+||......+. .+.+.  ...-+.|+|+++++.+...      |..++|||+...
T Consensus       335 F~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         335 FDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             CCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence            65   579999987654443 55432  2345789999999877633      778999998654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.57  E-value=6.7e-05  Score=51.55  Aligned_cols=168  Identities=9%  Similarity=0.042  Sum_probs=102.6

Q ss_pred             cEEEEEcCCceeEEeecCCCc---eeEEEEcCCCCeEEEEe---------------C-CCcee--eecccCceeEEEEee
Q 038439            5 KVKVWCTRQEASVLNIDMKAN---ICCVKYNPGSSNYIAKY---------------Q-STAPC--VHGHKKAVSYVKFLS   63 (179)
Q Consensus         5 ~i~vwd~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~---------------~-~~~~~--~~~~~~~i~~~~~~~   63 (179)
                      ...+||..+++....+.....   --.-.|+|+|+.++++-               . .-+.+  +..|.-.-..+.+.|
T Consensus        29 ~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p  108 (305)
T PF07433_consen   29 FALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP  108 (305)
T ss_pred             EEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC
Confidence            457889999988877753221   33678999997777765               1 11222  333433345677788


Q ss_pred             C-CeEEEec------------------CCCcEEEEecCCCcceeeec----CCCCCeEEEEEeeCCCEEEEeccCCc---
Q 038439           64 N-DELASAS------------------TDSTLRLWDVKENLPVRTFR----GHMNEKNFVGLTVNSEYIACGSESNE---  117 (179)
Q Consensus        64 ~-~~l~~~~------------------~d~~v~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~d~~---  117 (179)
                      + ..|+.+.                  ++..+...|..+++.+.+..    .|...++.+++.++|..++.....|.   
T Consensus       109 DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~  188 (305)
T PF07433_consen  109 DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGD  188 (305)
T ss_pred             CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCc
Confidence            8 4666542                  23345566778888776633    36778999999999987766544432   


Q ss_pred             ----EEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEeecC
Q 038439          118 ----VYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVLAA  179 (179)
Q Consensus       118 ----v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~  179 (179)
                          |-+++  .++.+..+......   ..  .-...+-++++++++..+++.+- .+.+.+||..+
T Consensus       189 ~~PLva~~~--~g~~~~~~~~p~~~---~~--~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t  248 (305)
T PF07433_consen  189 APPLVALHR--RGGALRLLPAPEEQ---WR--RLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT  248 (305)
T ss_pred             cCCeEEEEc--CCCcceeccCChHH---HH--hhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence                33333  23323222221110   00  00457889999999988866555 77899998754

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.53  E-value=2e-07  Score=61.44  Aligned_cols=72  Identities=11%  Similarity=0.105  Sum_probs=57.1

Q ss_pred             CeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEcc-CCCeEEEEeCCCcEE
Q 038439           96 EKNFVGLTVN-SEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKS-DSPTMLTANSQGTIK  173 (179)
Q Consensus        96 ~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~  173 (179)
                      .|.+++-+|. .+.+++|+.||.+-+||.+.......+. .          .|+.+++.+-|+| ++..|++++.||.+-
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l-~----------ahk~~i~eV~FHpk~p~~Lft~sedGslw  249 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLL-K----------AHKAEIWEVHFHPKNPEHLFTCSEDGSLW  249 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHH-H----------HhhhhhhheeccCCCchheeEecCCCcEE
Confidence            4888888886 4567788899999999999874433322 1          2278899999998 678899999999999


Q ss_pred             EEeec
Q 038439          174 VLVLA  178 (179)
Q Consensus       174 iwd~~  178 (179)
                      -||-.
T Consensus       250 ~wdas  254 (319)
T KOG4714|consen  250 HWDAS  254 (319)
T ss_pred             EEcCC
Confidence            99865

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.52  E-value=2.1e-06  Score=58.82  Aligned_cols=165  Identities=16%  Similarity=0.216  Sum_probs=114.2

Q ss_pred             CCCccEEEEEc-CCceeEEeec--CCCceeEEEEcCCCCeEEEEe-C--------------CCcee--eecccCceeEEE
Q 038439            1 MAYGKVKVWCT-RQEASVLNID--MKANICCVKYNPGSSNYIAKY-Q--------------STAPC--VHGHKKAVSYVK   60 (179)
Q Consensus         1 ~~d~~i~vwd~-~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~-~--------------~~~~~--~~~~~~~i~~~~   60 (179)
                      ++|.+++||-- +.++.-..+.  ...+++++.+++.. ..+.+| +              .....  ...|...+..+-
T Consensus        43 s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~-~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~i  121 (404)
T KOG1409|consen   43 SEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES-RRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIV  121 (404)
T ss_pred             cccceeeeEEeccccccCchhhhhCCCCceEeeeeccc-eEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEE
Confidence            57889999953 3455444554  46779999999887 455555 1              11111  455677777776


Q ss_pred             EeeC-CeEEEecCCCcEEEEec------------------------------------------CCCcceeeecCCCCCe
Q 038439           61 FLSN-DELASASTDSTLRLWDV------------------------------------------KENLPVRTFRGHMNEK   97 (179)
Q Consensus        61 ~~~~-~~l~~~~~d~~v~iwd~------------------------------------------~~~~~~~~~~~~~~~v   97 (179)
                      |+-. ..+++.+.|..+. |-.                                          ..-.++.++.+|...+
T Consensus       122 f~~~~e~V~s~~~dk~~~-~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~  200 (404)
T KOG1409|consen  122 FSLTHEWVLSTGKDKQFA-WHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEV  200 (404)
T ss_pred             ecCCceeEEEeccccceE-EEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccce
Confidence            6655 6666666554432 111                                          1113566778899999


Q ss_pred             EEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439           98 NFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus        98 ~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      .+++|.|....+++|..|..+.+||+--.+-. .+++..+          ...|..++..+--+.+.+++.||.|.+||+
T Consensus       201 ~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~-~~el~gh----------~~kV~~l~~~~~t~~l~S~~edg~i~~w~m  269 (404)
T KOG1409|consen  201 TCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT-AYELQGH----------NDKVQALSYAQHTRQLISCGEDGGIVVWNM  269 (404)
T ss_pred             EEEEEcCCCcEEEeccccCceEEEeccCCcce-eeeeccc----------hhhhhhhhhhhhheeeeeccCCCeEEEEec
Confidence            99999999999999999999999999754433 2333222          566777877777788999999999999997


Q ss_pred             c
Q 038439          178 A  178 (179)
Q Consensus       178 ~  178 (179)
                      +
T Consensus       270 n  270 (404)
T KOG1409|consen  270 N  270 (404)
T ss_pred             c
Confidence            5

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.52  E-value=8.5e-05  Score=50.20  Aligned_cols=150  Identities=11%  Similarity=0.081  Sum_probs=94.8

Q ss_pred             ccEEEEEcCCceeEEeec------CCCceeEEEEcCCCCeEEEEe-C-----C---Ccee----------eecccCceeE
Q 038439            4 GKVKVWCTRQEASVLNID------MKANICCVKYNPGSSNYIAKY-Q-----S---TAPC----------VHGHKKAVSY   58 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~-~-----~---~~~~----------~~~~~~~i~~   58 (179)
                      +.+.++|..+++......      ....++.+++.|+|. ++++. .     .   ++..          +.......+.
T Consensus        60 ~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNG  138 (246)
T PF08450_consen   60 GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNG  138 (246)
T ss_dssp             TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEE
T ss_pred             CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCCCeEEEEecCcccccc
Confidence            445666888775443332      234588999999995 44443 0     0   1122          1122334568


Q ss_pred             EEEeeC-CeE-EEecCCCcEEEEecCCCcc-------eeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccc
Q 038439           59 VKFLSN-DEL-ASASTDSTLRLWDVKENLP-------VRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPV  129 (179)
Q Consensus        59 ~~~~~~-~~l-~~~~~d~~v~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~  129 (179)
                      |+|+|+ +.| ++-+..+.|..+++.....       ...+....+..-.+++..+|+++++....+.|.++|.+ ++.+
T Consensus       139 i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~  217 (246)
T PF08450_consen  139 IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLL  217 (246)
T ss_dssp             EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEE
T ss_pred             eEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEE
Confidence            999999 555 4667788899999864221       11222222346789999999988887788999999988 7777


Q ss_pred             cccccCCCCCCCCcccCCcceEEEEEEc-cCCCeEEEEe
Q 038439          130 TWHRFSSPDMDDTDEDAGSYFISAVCWK-SDSPTMLTAN  167 (179)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~  167 (179)
                      ..+...            ...+++++|. ++.+.|+..+
T Consensus       218 ~~i~~p------------~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  218 REIELP------------VPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEE-S------------SSSEEEEEEESTTSSEEEEEE
T ss_pred             EEEcCC------------CCCEEEEEEECCCCCEEEEEe
Confidence            766653            2478999994 6767666654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.51  E-value=1.7e-05  Score=62.84  Aligned_cols=170  Identities=14%  Similarity=0.191  Sum_probs=99.4

Q ss_pred             ccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-------------CCC----cee--eecccCceeEEEEee
Q 038439            4 GKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-------------QST----APC--VHGHKKAVSYVKFLS   63 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-------------~~~----~~~--~~~~~~~i~~~~~~~   63 (179)
                      +.++||+-+ |+...+-+ ..+--.+++|.|.| .++|+.             ++|    +..  +......|..+.|++
T Consensus       237 R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~  314 (928)
T PF04762_consen  237 RVIRVYSRE-GELQSTSEPVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNS  314 (928)
T ss_pred             eEEEEECCC-ceEEeccccCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECC
Confidence            578888854 55444333 22334688999999 566665             111    111  223456789999999


Q ss_pred             C-CeEEEecCCCcEEEEecCCCc--ceeeecC-CCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcC----CCc-------
Q 038439           64 N-DELASASTDSTLRLWDVKENL--PVRTFRG-HMNEKNFVGLTVN-SEYIACGSESNEVYVYHKE----ISK-------  127 (179)
Q Consensus        64 ~-~~l~~~~~d~~v~iwd~~~~~--~~~~~~~-~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~----~~~-------  127 (179)
                      + ..|+..-.| .|.+|-.....  +.+.+.. ....+..+.|+|. ...+...+.+|.+..++..    .+.       
T Consensus       315 ds~iLAv~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~  393 (928)
T PF04762_consen  315 DSEILAVWLED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDN  393 (928)
T ss_pred             CCCEEEEEecC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCc
Confidence            9 777765544 49999887643  1222221 2233445889985 4446666665666554432    111       


Q ss_pred             ---------ccccccc----CCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          128 ---------PVTWHRF----SSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       128 ---------~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                               .+..-.+    -++++....-.- ...|..++|++++..+++-..||.|.+|..
T Consensus       394 g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~-~~~v~~vaf~~~~~~~avl~~d~~l~~~~~  455 (928)
T PF04762_consen  394 GTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL-PSPVNDVAFSPSNSRFAVLTSDGSLSIYEW  455 (928)
T ss_pred             eEEEEEeCCeEEEecccccCCCchHhceEEcC-CCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence                     0000000    011111111111 567999999999988999999999999984

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=1.2e-06  Score=61.02  Aligned_cols=78  Identities=17%  Similarity=0.213  Sum_probs=68.0

Q ss_pred             eecccCceeEEEEeeC--CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCC
Q 038439           49 VHGHKKAVSYVKFLSN--DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEI  125 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~  125 (179)
                      +..+...|..++|+|.  +++..++.+..|+|.|+++...+..+..+ ..+++++|..| .++|+.|...|.|.+||++.
T Consensus       189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~  267 (463)
T KOG1645|consen  189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ  267 (463)
T ss_pred             ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence            5667788999999999  68999999999999999999888888876 77999999987 45688888999999999986


Q ss_pred             Cc
Q 038439          126 SK  127 (179)
Q Consensus       126 ~~  127 (179)
                      .+
T Consensus       268 ~~  269 (463)
T KOG1645|consen  268 PE  269 (463)
T ss_pred             CC
Confidence            43

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.50  E-value=1.3e-05  Score=58.34  Aligned_cols=110  Identities=14%  Similarity=0.225  Sum_probs=72.3

Q ss_pred             CceeEEEEeeC-CeEEEecC---CCcEEEEecCC-C---cceeeecCCCCCeEEEEEeeCCCEEEEe---ccCCcEEEEE
Q 038439           54 KAVSYVKFLSN-DELASAST---DSTLRLWDVKE-N---LPVRTFRGHMNEKNFVGLTVNSEYIACG---SESNEVYVYH  122 (179)
Q Consensus        54 ~~i~~~~~~~~-~~l~~~~~---d~~v~iwd~~~-~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~d~~v~vwd  122 (179)
                      ..|...+|-|. +.+++-+.   ..++++|-+.+ .   +++..+.  ....+.+.|+|.|++++++   +..|.+..+|
T Consensus       446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D  523 (698)
T KOG2314|consen  446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYD  523 (698)
T ss_pred             hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEe
Confidence            45667788888 66555443   34788888773 2   2333332  3456789999999998765   4578899999


Q ss_pred             cCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCC------CcEEEEee
Q 038439          123 KEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQ------GTIKVLVL  177 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~iwd~  177 (179)
                      ..-..........            -...+.+.|.|.|+|+++++..      .--++|++
T Consensus       524 ~~~a~~k~~~~~e------------h~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tf  572 (698)
T KOG2314|consen  524 TDYADLKDTASPE------------HFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTF  572 (698)
T ss_pred             cchhhhhhccCcc------------ccccccceECCCCCEEEEeeehhhhccccceEEEEe
Confidence            8753332222111            2346779999999999998873      34566654

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=5.4e-07  Score=62.74  Aligned_cols=91  Identities=14%  Similarity=0.150  Sum_probs=73.9

Q ss_pred             EEEEecCCCcceeeecCCCCCeEEEEEeeCCC-EEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEE
Q 038439           76 LRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE-YIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAV  154 (179)
Q Consensus        76 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  154 (179)
                      +++.+..+.+....+..+...|+.++|+|..+ ++..++.+..|+|.|+++...+..+..             ...++++
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a-------------~~~~wSC  241 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA-------------YNQIWSC  241 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec-------------cCCceee
Confidence            56666555555555566778899999999877 678889999999999999888777665             5679999


Q ss_pred             EEccC-CCeEEEEeCCCcEEEEeecC
Q 038439          155 CWKSD-SPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       155 ~~~~~-~~~l~~~~~dg~i~iwd~~~  179 (179)
                      +|..+ .+++++|-..|.|.|||++.
T Consensus       242 ~wDlde~h~IYaGl~nG~VlvyD~R~  267 (463)
T KOG1645|consen  242 CWDLDERHVIYAGLQNGMVLVYDMRQ  267 (463)
T ss_pred             eeccCCcceeEEeccCceEEEEEccC
Confidence            99875 46889999999999999873

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.50  E-value=2.2e-06  Score=65.38  Aligned_cols=103  Identities=7%  Similarity=-0.002  Sum_probs=75.2

Q ss_pred             CCCceeEEEEcCCCCeEEEEe-------------CCCcee-eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcc
Q 038439           22 MKANICCVKYNPGSSNYIAKY-------------QSTAPC-VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLP   86 (179)
Q Consensus        22 ~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~   86 (179)
                      ..+..+-..|+|..+.+.++.             ++++|- -....-.+++++|+|. -.|+.|=.-|.+.+|...+.+.
T Consensus        14 sdavsti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~   93 (1416)
T KOG3617|consen   14 SDAVSTISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET   93 (1416)
T ss_pred             ccccccccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence            334455677888886554444             222222 0001123467999999 6777887889999999887776


Q ss_pred             eeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcC
Q 038439           87 VRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKE  124 (179)
Q Consensus        87 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~  124 (179)
                      -.....|..++..+.|+|+|..++++..-|.|.+|...
T Consensus        94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            65566789999999999999999999999999999876

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.50  E-value=1.7e-07  Score=71.49  Aligned_cols=155  Identities=12%  Similarity=0.165  Sum_probs=105.5

Q ss_pred             CCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeCCCcee----------eeccc-CceeEEEEeeC-CeEE
Q 038439            2 AYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQSTAPC----------VHGHK-KAVSYVKFLSN-DELA   68 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~----------~~~~~-~~i~~~~~~~~-~~l~   68 (179)
                      -.|.|+++++.+|....... |+++|+-+.-+.+|..++..+...+|+          -..|+ ..-.++.|+.. ..-+
T Consensus      1121 ~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~ 1200 (1516)
T KOG1832|consen 1121 HAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDEDKAVKFSNSLQFRA 1200 (1516)
T ss_pred             ccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCccccccccceeehhhhHHHHH
Confidence            35889999999998877776 899999999999998888777444433          11122 23467888877 4445


Q ss_pred             EecCCCcEEEEecCCCcceeeecCC----CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439           69 SASTDSTLRLWDVKENLPVRTFRGH----MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE  144 (179)
Q Consensus        69 ~~~~d~~v~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~  144 (179)
                      .|.....+.+||++++.++.++-..    ...-+.+.|+|+..+++-   ||  .+||++..+.+..+.-.         
T Consensus      1201 ~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~f--------- 1266 (1516)
T KOG1832|consen 1201 LGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQF--------- 1266 (1516)
T ss_pred             hcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---Cc--eeeeeccHHHHhhhhhh---------
Confidence            5555567899999998877764321    223367889999888763   55  48999988766554321         


Q ss_pred             cCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          145 DAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       145 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                          ..--.-.|+|+|..++.-+.     |||+++
T Consensus      1267 ----t~~~~G~FHP~g~eVIINSE-----IwD~RT 1292 (1516)
T KOG1832|consen 1267 ----TDYGGGGFHPSGNEVIINSE-----IWDMRT 1292 (1516)
T ss_pred             ----eecccccccCCCceEEeech-----hhhhHH
Confidence                11122347888887776553     676653

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.49  E-value=2.6e-06  Score=63.33  Aligned_cols=112  Identities=16%  Similarity=0.251  Sum_probs=81.8

Q ss_pred             EEeeC-CeEEEecCCCcEEEEecCCCcceeeecC--CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCC
Q 038439           60 KFLSN-DELASASTDSTLRLWDVKENLPVRTFRG--HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSS  136 (179)
Q Consensus        60 ~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~  136 (179)
                      ++... .+++.|+.-|.+.+|+-..++ ++.++.  ..+.+.....+++..++|.|+..|.|.++.+....+........
T Consensus        40 c~dst~~~l~~GsS~G~lyl~~R~~~~-~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~  118 (726)
T KOG3621|consen   40 CVDATEEYLAMGSSAGSVYLYNRHTGE-MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP  118 (726)
T ss_pred             EeecCCceEEEecccceEEEEecCchh-hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence            34445 899999999999999976554 333333  34455566788888888999999999999888754433222211


Q ss_pred             CCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       137 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .+      ..|+..|++++|++++..+++|...|+|..-.|.
T Consensus       119 ~d------~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~  154 (726)
T KOG3621|consen  119 CD------KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELD  154 (726)
T ss_pred             cc------ccCCceEEEEEecccccEEeecCCCceEEEEEec
Confidence            11      1137899999999999999999999999876654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.49  E-value=3.3e-05  Score=56.31  Aligned_cols=133  Identities=14%  Similarity=0.100  Sum_probs=74.2

Q ss_pred             CCCceeEEEEcCCCCeEEEEeCCCcee-ee------cccCceeEEEEeeCCeEEEecCCCcEEEE-ecCCCcceeeecCC
Q 038439           22 MKANICCVKYNPGSSNYIAKYQSTAPC-VH------GHKKAVSYVKFLSNDELASASTDSTLRLW-DVKENLPVRTFRGH   93 (179)
Q Consensus        22 ~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~i~~~~~~~~~~l~~~~~d~~v~iw-d~~~~~~~~~~~~~   93 (179)
                      ..-.+..+.++|+|+.+++++ .++.. +.      ...+.-..+.|.+.+.+++-.....|.++ ++. .+....++..
T Consensus        31 ~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~-~~~~k~i~~~  108 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFK-NEVVKSIKLP  108 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTE-E-TT-----S
T ss_pred             CCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccccCceeEEEEecCccEEEEECCCeEEEEEcCc-cccceEEcCC
Confidence            345589999999997666655 33322 11      22344566788888777777778889996 342 2222333321


Q ss_pred             CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEE
Q 038439           94 MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIK  173 (179)
Q Consensus        94 ~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  173 (179)
                       ..+..+-.   |..|...+. +.|.+||..+++.+.....              ..|..+.|++++++++..+.+ .+.
T Consensus       109 -~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v--------------~~vk~V~Ws~~g~~val~t~~-~i~  168 (443)
T PF04053_consen  109 -FSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDV--------------SAVKYVIWSDDGELVALVTKD-SIY  168 (443)
T ss_dssp             -S-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---------------E-EEEEE-TTSSEEEEE-S--SEE
T ss_pred             -cccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEec--------------CCCcEEEEECCCCEEEEEeCC-eEE
Confidence             12333322   777776654 4899999999998877764              248999999999999999876 566


Q ss_pred             EEe
Q 038439          174 VLV  176 (179)
Q Consensus       174 iwd  176 (179)
                      |++
T Consensus       169 il~  171 (443)
T PF04053_consen  169 ILK  171 (443)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            655

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.49  E-value=2.4e-05  Score=61.74  Aligned_cols=111  Identities=9%  Similarity=0.146  Sum_probs=69.6

Q ss_pred             EEEEeeC-CeEEEe-----cCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEec---cCCcEEEEEcCCCcc
Q 038439           58 YVKFLSN-DELASA-----STDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGS---ESNEVYVYHKEISKP  128 (179)
Q Consensus        58 ~~~~~~~-~~l~~~-----~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~d~~v~vwd~~~~~~  128 (179)
                      .|.|--| .++++.     ...+.+++||-+ +.+-..-......-.+++|-|.|..+++-.   .|+.|.+|... |-.
T Consensus       200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~  277 (1265)
T KOG1920|consen  200 SISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLR  277 (1265)
T ss_pred             eEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-Ccc
Confidence            4788888 677662     333789999976 432222222233345799999999988753   35668888754 322


Q ss_pred             ccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEE---EeCCCcEEEEeec
Q 038439          129 VTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLT---ANSQGTIKVLVLA  178 (179)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~---~~~dg~i~iwd~~  178 (179)
                      -..+.+..+.        ....+..++|+.++..|++   ......|++|-+.
T Consensus       278 hg~f~l~~p~--------de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~  322 (1265)
T KOG1920|consen  278 HGEFVLPFPL--------DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTG  322 (1265)
T ss_pred             ccccccCCcc--------cccchheeeecCCCCceeeeecccccceEEEEEec
Confidence            2222222211        0334899999999999888   4444459999764

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.46  E-value=0.00011  Score=49.12  Aligned_cols=161  Identities=13%  Similarity=0.041  Sum_probs=93.2

Q ss_pred             CCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe----------CCCcee-e-eccc----CceeEEEEeeC-
Q 038439            2 AYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY----------QSTAPC-V-HGHK----KAVSYVKFLSN-   64 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~-~-~~~~----~~i~~~~~~~~-   64 (179)
                      .++.|..||..+++.+..+....++.......++ .+++..          .+++.+ . ....    ........... 
T Consensus        44 ~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~  122 (238)
T PF13360_consen   44 GDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGG-RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG  122 (238)
T ss_dssp             TTSEEEEEETTTSEEEEEEECSSCGGSGEEEETT-EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET
T ss_pred             CCCEEEEEECCCCCEEEEeeccccccceeeeccc-ccccccceeeeEecccCCcceeeeeccccccccccccccCceEec
Confidence            5788999999999988777654433222222222 233222          445554 1 1111    01112222223 


Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCCCCC----------eEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccccc
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGHMNE----------KNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF  134 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~  134 (179)
                      ..++.+..++.|..+|+++++.+..+......          +..-....++ .++.+..++.+..+|+++++.+.....
T Consensus       123 ~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~~  201 (238)
T PF13360_consen  123 DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKPI  201 (238)
T ss_dssp             TEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEECS
T ss_pred             CEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEecC
Confidence            67778888999999999999988776553322          1111222244 666677777544449999986532221


Q ss_pred             CCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          135 SSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                                   .. +.. ....++..|++++.++.+..||+++
T Consensus       202 -------------~~-~~~-~~~~~~~~l~~~~~~~~l~~~d~~t  231 (238)
T PF13360_consen  202 -------------SG-IYS-LPSVDGGTLYVTSSDGRLYALDLKT  231 (238)
T ss_dssp             -------------S--ECE-CEECCCTEEEEEETTTEEEEEETTT
T ss_pred             -------------CC-ccC-CceeeCCEEEEEeCCCEEEEEECCC
Confidence                         11 222 1346788888888999999999875

...

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.45  E-value=3.2e-06  Score=63.71  Aligned_cols=99  Identities=15%  Similarity=0.175  Sum_probs=75.0

Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeC-----CCEEEEeccCCcEEEEEcCCCccccccccCCCCC
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVN-----SEYIACGSESNEVYVYHKEISKPVTWHRFSSPDM  139 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~  139 (179)
                      .++++||.||.|.|-.+-+.+...++. ...++.+++++|+     .+.+++|+..| +.++..+-............  
T Consensus        84 ey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~--  159 (846)
T KOG2066|consen   84 EYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG--  159 (846)
T ss_pred             ceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC--
Confidence            799999999999999988877766665 3567899999998     56789999988 77776543222222211111  


Q ss_pred             CCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          140 DDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       140 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                              .++|.+++|.  |+++|-++.+| |+|||+.
T Consensus       160 --------eG~I~~i~W~--g~lIAWand~G-v~vyd~~  187 (846)
T KOG2066|consen  160 --------EGPIHSIKWR--GNLIAWANDDG-VKVYDTP  187 (846)
T ss_pred             --------ccceEEEEec--CcEEEEecCCC-cEEEecc
Confidence                    7789999995  88899999887 8999975

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.43  E-value=0.00017  Score=49.58  Aligned_cols=148  Identities=11%  Similarity=0.056  Sum_probs=88.7

Q ss_pred             CccEEEEEcC-CceeEEeec-CCCceeEEEEcCCCCeEEEEe----------------------------CCCcee----
Q 038439            3 YGKVKVWCTR-QEASVLNID-MKANICCVKYNPGSSNYIAKY----------------------------QSTAPC----   48 (179)
Q Consensus         3 d~~i~vwd~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------------------------~~~~~~----   48 (179)
                      .|.|-|||.. +.+.+.++. +.-....+.+.|+|+.|+++-                            .+++.+    
T Consensus        76 ~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~  155 (305)
T PF07433_consen   76 RGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVE  155 (305)
T ss_pred             cEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeee
Confidence            5789999998 667777776 555678889999996555543                            222222    


Q ss_pred             e--ecccCceeEEEEeeCCeEEEecCC-C-------cEEEEecCCCcceeeecC-------CCCCeEEEEEeeCCCEEE-
Q 038439           49 V--HGHKKAVSYVKFLSNDELASASTD-S-------TLRLWDVKENLPVRTFRG-------HMNEKNFVGLTVNSEYIA-  110 (179)
Q Consensus        49 ~--~~~~~~i~~~~~~~~~~l~~~~~d-~-------~v~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~-  110 (179)
                      +  ..|.-.|.-+++.+++.++.+... +       -|-+++  .++.+..+..       -.+-+-++++++++.+++ 
T Consensus       156 Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~  233 (305)
T PF07433_consen  156 LPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAV  233 (305)
T ss_pred             cCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEE
Confidence            2  224445555666555333333211 1       122222  2222332322       235678999999998775 


Q ss_pred             EeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEe
Q 038439          111 CGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN  167 (179)
Q Consensus       111 ~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  167 (179)
                      ++-.-+.+.+||..+++.+....+              ..+..++-.+++ ++++.+
T Consensus       234 tsPrGg~~~~~d~~tg~~~~~~~l--------------~D~cGva~~~~~-f~~ssG  275 (305)
T PF07433_consen  234 TSPRGGRVAVWDAATGRLLGSVPL--------------PDACGVAPTDDG-FLVSSG  275 (305)
T ss_pred             ECCCCCEEEEEECCCCCEeecccc--------------CceeeeeecCCc-eEEeCC
Confidence            445578899999999998876653              245666666655 444443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.42  E-value=1.3e-06  Score=59.26  Aligned_cols=126  Identities=16%  Similarity=0.171  Sum_probs=83.6

Q ss_pred             eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcce---eeecCC-----CCCeEEEEEeeC-CCEEEEeccCCcE
Q 038439           49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPV---RTFRGH-----MNEKNFVGLTVN-SEYIACGSESNEV  118 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~---~~~~~~-----~~~v~~~~~~~~-~~~~~~~~~d~~v  118 (179)
                      ...|.-.|+++.+..+ ..+++ +.|-.|.+|++......   -.++.|     ...|++..|+|. ...+...+..|.|
T Consensus       168 aNaH~yhiNSiS~NsD~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~I  246 (460)
T COG5170         168 ANAHPYHINSISFNSDKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEI  246 (460)
T ss_pred             cccceeEeeeeeecCchheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcE
Confidence            4678889999999999 55555 55788999998753322   223333     235788899996 4556667778999


Q ss_pred             EEEEcCCCcc------ccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          119 YVYHKEISKP------VTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       119 ~vwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ++-|++....      +......+.. ...+.+. -..|..+.|+++|+++++-+.- +++|||.+
T Consensus       247 kl~DlRq~alcdn~~klfe~~~D~v~-~~ff~ei-vsSISD~kFs~ngryIlsRdyl-tvkiwDvn  309 (460)
T COG5170         247 KLNDLRQSALCDNSKKLFELTIDGVD-VDFFEEI-VSSISDFKFSDNGRYILSRDYL-TVKIWDVN  309 (460)
T ss_pred             EehhhhhhhhccCchhhhhhccCccc-chhHHHH-hhhhcceEEcCCCcEEEEeccc-eEEEEecc
Confidence            9999995432      1111111110 1111111 4568889999999999876654 79999975

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.41  E-value=0.0001  Score=53.02  Aligned_cols=126  Identities=10%  Similarity=0.060  Sum_probs=73.4

Q ss_pred             CCccEEEEEcCCceeEEeecCCCcee-EEEEcCCCCeEEEEe----------CCCcee-eecccCceeEEEEeeCCeEEE
Q 038439            2 AYGKVKVWCTRQEASVLNIDMKANIC-CVKYNPGSSNYIAKY----------QSTAPC-VHGHKKAVSYVKFLSNDELAS   69 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~i~~~~~~~~~~l~~   69 (179)
                      .+|.|.-+|..+++.+-.......+. ....  ++..+++..          .+++.+ .......+.+.-...++.++.
T Consensus        73 ~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v  150 (377)
T TIGR03300        73 ADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVV  150 (377)
T ss_pred             CCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEE
Confidence            46789999999998877766444332 2222  233444443          233433 111112221111112266777


Q ss_pred             ecCCCcEEEEecCCCcceeeecCCCCCeE-----EEEEeeCCCEEEEeccCCcEEEEEcCCCccccc
Q 038439           70 ASTDSTLRLWDVKENLPVRTFRGHMNEKN-----FVGLTVNSEYIACGSESNEVYVYHKEISKPVTW  131 (179)
Q Consensus        70 ~~~d~~v~iwd~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~  131 (179)
                      ++.++.+..+|.++++.+..+........     ....  .+..++.+..++.+..+|+++++.+..
T Consensus       151 ~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~  215 (377)
T TIGR03300       151 RTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWE  215 (377)
T ss_pred             ECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeee
Confidence            88899999999999987776654322111     1111  134677888889999999999876544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.38  E-value=8.2e-05  Score=53.48  Aligned_cols=97  Identities=7%  Similarity=0.004  Sum_probs=64.2

Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE  144 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~  144 (179)
                      +.++.++.++.+..+|..+++.+...... . ....  ...+..+++++.+|.+..+|..+++.+.......        
T Consensus       242 ~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-~-~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~--------  309 (377)
T TIGR03300       242 GQVYAVSYQGRVAALDLRSGRVLWKRDAS-S-YQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDELK--------  309 (377)
T ss_pred             CEEEEEEcCCEEEEEECCCCcEEEeeccC-C-ccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEcccccc--------
Confidence            66777888899999999988776655421 1 1111  2346678888889999999999988764432100        


Q ss_pred             cCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          145 DAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       145 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                         .........  .+..+++++.+|.++++|.+
T Consensus       310 ---~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~  338 (377)
T TIGR03300       310 ---YRQLTAPAV--VGGYLVVGDFEGYLHWLSRE  338 (377)
T ss_pred             ---CCccccCEE--ECCEEEEEeCCCEEEEEECC
Confidence               111111112  36688889999999999865

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.33  E-value=0.00014  Score=48.88  Aligned_cols=114  Identities=11%  Similarity=0.042  Sum_probs=72.2

Q ss_pred             CCCceeEEEEcCCCCeEEEEeC-CCcee-eecccCceeEEEEeeC-Ce--EEEecCCCcE------EEEecCCCcceeee
Q 038439           22 MKANICCVKYNPGSSNYIAKYQ-STAPC-VHGHKKAVSYVKFLSN-DE--LASASTDSTL------RLWDVKENLPVRTF   90 (179)
Q Consensus        22 ~~~~v~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~i~~~~~~~~-~~--l~~~~~d~~v------~iwd~~~~~~~~~~   90 (179)
                      ....|.++.|+|..+.++++|. ..+.- -.+-...+++-+...+ .+  .++...|+..      .+|.+.+.+.....
T Consensus       146 yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~  225 (282)
T PF15492_consen  146 YPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQ  225 (282)
T ss_pred             CCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecc
Confidence            4678999999999866666662 21111 3344456666666655 22  2343333321      23332222111111


Q ss_pred             cCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccC
Q 038439           91 RGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFS  135 (179)
Q Consensus        91 ~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~  135 (179)
                      ......|..|..+|||+.|++...+|.|.+|++.+-+....+...
T Consensus       226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence            224567999999999999999999999999999988777666654

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.32  E-value=0.00031  Score=49.46  Aligned_cols=163  Identities=13%  Similarity=0.133  Sum_probs=95.7

Q ss_pred             ccEEEEEcCCceeEEeec--CCCceeEEEE---cCC---CCeEEEEe----------CC-Ccee----------------
Q 038439            4 GKVKVWCTRQEASVLNID--MKANICCVKY---NPG---SSNYIAKY----------QS-TAPC----------------   48 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~--~~~~v~~~~~---~~~---~~~~~~~~----------~~-~~~~----------------   48 (179)
                      ..|+|.|..+.+.+..+.  ....+.+++.   ..+   ...++++|          .. |+.+                
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            468999998888777664  4445554443   332   14677777          01 2222                


Q ss_pred             --eecccCceeEEEEeeCCeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCC-
Q 038439           49 --VHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEI-  125 (179)
Q Consensus        49 --~~~~~~~i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~-  125 (179)
                        .....++|.++.-. .+.++.+. .+.|.+|++...+.+.........+...+....++++++|.....+.++..+. 
T Consensus        82 i~~~~~~g~V~ai~~~-~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~  159 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEE  159 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETT
T ss_pred             EEEEeecCcceEhhhh-CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEcc
Confidence              12234567776644 34444444 47899999987762322222222233444444577999998888888886554 


Q ss_pred             CccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          126 SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ...+........          ...++++.+-++++.++++..+|.+.++..+
T Consensus       160 ~~~l~~va~d~~----------~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  160 NNKLILVARDYQ----------PRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             TE-EEEEEEESS-----------BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             CCEEEEEEecCC----------CccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            221222211111          5568888888777799999999999998764

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.32  E-value=9.8e-07  Score=67.50  Aligned_cols=115  Identities=11%  Similarity=0.110  Sum_probs=90.7

Q ss_pred             eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCC--cEEEEEcCC
Q 038439           49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESN--EVYVYHKEI  125 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~--~v~vwd~~~  125 (179)
                      +..|+...+|++|+.+ ++|+.|+..|.|+++++.+|.....+.+|.+.++.+.-+.+|...++.+.-.  ...+|++.+
T Consensus      1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred             hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccc
Confidence            6778899999999999 9999999999999999999999999999999999999898998877655432  467899875


Q ss_pred             -CccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          126 -SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       126 -~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                       +.+..++.                .-.++.|+...+.-+.|+......+||+++
T Consensus      1177 ~~~~~Hsf~----------------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT 1215 (1516)
T KOG1832|consen 1177 TGGPRHSFD----------------EDKAVKFSNSLQFRALGTEADDALLYDVQT 1215 (1516)
T ss_pred             ccCcccccc----------------ccceeehhhhHHHHHhcccccceEEEeccc
Confidence             44444433                235577776655556666666788888764

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.31  E-value=0.00031  Score=47.47  Aligned_cols=159  Identities=11%  Similarity=0.098  Sum_probs=92.8

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEc-CCCCeEEEEe---------CCCcee----ee--c-ccCceeEEEEeeC-C
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYN-PGSSNYIAKY---------QSTAPC----VH--G-HKKAVSYVKFLSN-D   65 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~---------~~~~~~----~~--~-~~~~i~~~~~~~~-~   65 (179)
                      +.|.-|+..+++.. .+.... ...+++. +++ .++++.         .+++..    ..  . .....+.+++.|+ +
T Consensus        22 ~~i~~~~~~~~~~~-~~~~~~-~~G~~~~~~~g-~l~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~   98 (246)
T PF08450_consen   22 GRIYRVDPDTGEVE-VIDLPG-PNGMAFDRPDG-RLYVADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN   98 (246)
T ss_dssp             TEEEEEETTTTEEE-EEESSS-EEEEEEECTTS-EEEEEETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-
T ss_pred             CEEEEEECCCCeEE-EEecCC-CceEEEEccCC-EEEEEEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC
Confidence            34444554444332 222233 7777887 666 666665         222222    21  1 3356778999999 6


Q ss_pred             eEEEecCC--------CcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEE-EeccCCcEEEEEcCCCcc-ccc----
Q 038439           66 ELASASTD--------STLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIA-CGSESNEVYVYHKEISKP-VTW----  131 (179)
Q Consensus        66 ~l~~~~~d--------~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~d~~v~vwd~~~~~~-~~~----  131 (179)
                      ++++....        +.+..++.. ++ +..+.......+.++|+|+++.|+ +-+..+.|..+++..... +..    
T Consensus        99 ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~  176 (246)
T PF08450_consen   99 LYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVF  176 (246)
T ss_dssp             EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEE
T ss_pred             EEEEecCCCccccccccceEEECCC-Ce-EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeE
Confidence            66665543        446666666 44 333333345578999999998765 556678899999864322 111    


Q ss_pred             cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      ..+...          ....-.+++..+|+..++....+.|.++|.
T Consensus       177 ~~~~~~----------~g~pDG~~vD~~G~l~va~~~~~~I~~~~p  212 (246)
T PF08450_consen  177 IDFPGG----------PGYPDGLAVDSDGNLWVADWGGGRIVVFDP  212 (246)
T ss_dssp             EE-SSS----------SCEEEEEEEBTTS-EEEEEETTTEEEEEET
T ss_pred             EEcCCC----------CcCCCcceEcCCCCEEEEEcCCCEEEEECC
Confidence            111110          234788999999998888778888988874

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.27  E-value=6.6e-07  Score=65.87  Aligned_cols=166  Identities=11%  Similarity=0.172  Sum_probs=101.6

Q ss_pred             CCccEEEEEcCCcee---EEeecCCCceeEEEEcCCCCeEEEEe----CCCcee-----------------eec-ccCce
Q 038439            2 AYGKVKVWCTRQEAS---VLNIDMKANICCVKYNPGSSNYIAKY----QSTAPC-----------------VHG-HKKAV   56 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~-----------------~~~-~~~~i   56 (179)
                      .+|.|-+-.+....-   ..+-.+..++++++|++-....+|+|    +...++                 +.+ .....
T Consensus        78 atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gq  157 (783)
T KOG1008|consen   78 ATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQ  157 (783)
T ss_pred             ccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCc
Confidence            346666665543321   12223567899999999877788888    111111                 222 23345


Q ss_pred             eEEEEeeC-CeEEEecCCCcEEEEecCCCc-ceeeecCCCCCeEEEEEee-CCCEEEEeccCCcEEEEE-cCCCc-cccc
Q 038439           57 SYVKFLSN-DELASASTDSTLRLWDVKENL-PVRTFRGHMNEKNFVGLTV-NSEYIACGSESNEVYVYH-KEISK-PVTW  131 (179)
Q Consensus        57 ~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~v~vwd-~~~~~-~~~~  131 (179)
                      .+++|..+ .++++|...+.+.++|++... ....+  .+..+..+...| .+.|+++-. |+.|.+|| .+.-+ ++..
T Consensus       158 ns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~  234 (783)
T KOG1008|consen  158 NSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQI  234 (783)
T ss_pred             cccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHH
Confidence            57788877 788888888899999998432 11122  234566677888 677777655 99999999 54433 3332


Q ss_pred             cccCCCCCCCCcccCCcceEEEEEEccC--CCeEEEEeCCCcEEEEeec
Q 038439          132 HRFSSPDMDDTDEDAGSYFISAVCWKSD--SPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~  178 (179)
                      .......+        ...+..++|+|.  |...+..-..++|++||+.
T Consensus       235 i~~~~N~~--------~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  235 ILRNENKK--------PKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             HhhCCCCc--------ccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            22211100        336899999994  4434444457889999874

>smart00320 WD40 WD40 repeats

Probab=98.26  E-value=3.7e-06  Score=38.65  Aligned_cols=38  Identities=18%  Similarity=0.444  Sum_probs=32.8

Q ss_pred             cceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEE
Q 038439           85 LPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYH  122 (179)
Q Consensus        85 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd  122 (179)
                      ++...+..|...+.++.|++++..+++++.|+.+++||
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34556667888899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.25  E-value=0.00016  Score=55.02  Aligned_cols=120  Identities=17%  Similarity=0.170  Sum_probs=86.7

Q ss_pred             ccEEEEEcCCceeEEeec-CCCceeEEEEcCC-----------CCeEEEEe-CCCcee------------eecccCceeE
Q 038439            4 GKVKVWCTRQEASVLNID-MKANICCVKYNPG-----------SSNYIAKY-QSTAPC------------VHGHKKAVSY   58 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~-----------~~~~~~~~-~~~~~~------------~~~~~~~i~~   58 (179)
                      ..|.+-|..+.+.++.++ |+..|+.+.|.|-           .+.+++++ ..|+.+            +..|..++..
T Consensus        35 slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qd  114 (1062)
T KOG1912|consen   35 SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQD  114 (1062)
T ss_pred             ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhh
Confidence            467788888888888887 7788999999872           22345555 222222            6678889999


Q ss_pred             EEEeeC-----CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEee-CCCEEEEeccCCcEEEEEc
Q 038439           59 VKFLSN-----DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTV-NSEYIACGSESNEVYVYHK  123 (179)
Q Consensus        59 ~~~~~~-----~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~v~vwd~  123 (179)
                      +.|-+.     ..|+......++.+|+..+|+....+........++.+.| |.+.+...+..|.+.+-+.
T Consensus       115 l~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~  185 (1062)
T KOG1912|consen  115 LCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD  185 (1062)
T ss_pred             eeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence            999875     3567777788999999999988877765556667788877 5566666666676665543

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=6.4e-06  Score=60.65  Aligned_cols=73  Identities=14%  Similarity=0.223  Sum_probs=60.6

Q ss_pred             CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEE-EEEEccCCCeEEEEeCCCcE
Q 038439           94 MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFIS-AVCWKSDSPTMLTANSQGTI  172 (179)
Q Consensus        94 ~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i  172 (179)
                      ...+..+.|+|.-..||.+..+|.|.+..+. .+.+..+...            ...++ +++|.|||+.|++|-.||+|
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p------------~~~v~~sL~W~~DGkllaVg~kdG~I   86 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIP------------GENVTASLCWRPDGKLLAVGFKDGTI   86 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCC------------CCccceeeeecCCCCEEEEEecCCeE
Confidence            4467889999999999999999999999887 6666555532            33444 99999999999999999999


Q ss_pred             EEEeecC
Q 038439          173 KVLVLAA  179 (179)
Q Consensus       173 ~iwd~~~  179 (179)
                      ++.|+++
T Consensus        87 ~L~Dve~   93 (665)
T KOG4640|consen   87 RLHDVEK   93 (665)
T ss_pred             EEEEccC
Confidence            9999753

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.24  E-value=9.3e-05  Score=57.27  Aligned_cols=121  Identities=12%  Similarity=0.121  Sum_probs=80.5

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCC--------CCeEEEEe---------C--CCcee-----eecccCceeE
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPG--------SSNYIAKY---------Q--STAPC-----VHGHKKAVSY   58 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~--------~~~~~~~~---------~--~~~~~-----~~~~~~~i~~   58 (179)
                      .+.|+-.|++.|+.+........+.-..+.|+        .+.++...         +  ..+.+     ........+|
T Consensus       503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~  582 (794)
T PF08553_consen  503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSC  582 (794)
T ss_pred             CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceE
Confidence            46778888899998888874443333444442        22344433         1  11122     1123445677


Q ss_pred             EEEeeCCeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcC
Q 038439           59 VKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKE  124 (179)
Q Consensus        59 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~  124 (179)
                      ++-..+++++.|+.+|.||+||--..+....+.+-..+|..+..+.||+++++.+ +.++.+++..
T Consensus       583 ~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~  647 (794)
T PF08553_consen  583 FATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL  647 (794)
T ss_pred             EEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence            7766669999999999999999544444455556678999999999999987666 4667788753

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.16  E-value=0.00029  Score=40.97  Aligned_cols=100  Identities=18%  Similarity=0.265  Sum_probs=67.3

Q ss_pred             eeEEEEee---C--CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccc
Q 038439           56 VSYVKFLS---N--DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVT  130 (179)
Q Consensus        56 i~~~~~~~---~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~  130 (179)
                      |+++++.+   +  +.|+.||.|..||+|+-.  +.+..+.. ...+.++.-... ..|+.+..+|+|-+|+-..  .+ 
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--Rl-   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RL-   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--ee-
Confidence            55666554   3  689999999999999744  56777764 555666765554 5688889999999998632  22 


Q ss_pred             ccccCCCCCCCCcccCCcceEEEEEEcc---CC-CeEEEEeCCCcEEE
Q 038439          131 WHRFSSPDMDDTDEDAGSYFISAVCWKS---DS-PTMLTANSQGTIKV  174 (179)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~-~~l~~~~~dg~i~i  174 (179)
                       ++.++           +..+.++.+..   +| .-|++|-.+|.|.+
T Consensus        75 -WRiKS-----------K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   75 -WRIKS-----------KNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             -eeecc-----------CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence             22221           33466666543   22 36889999998754

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=4.8e-05  Score=54.22  Aligned_cols=174  Identities=10%  Similarity=-0.038  Sum_probs=103.2

Q ss_pred             CccEEEEEcCCce---eEEee-cCCCceeEEEEcCCCCeEEEEe-CCCcee----eec-----------ccCceeEEEEe
Q 038439            3 YGKVKVWCTRQEA---SVLNI-DMKANICCVKYNPGSSNYIAKY-QSTAPC----VHG-----------HKKAVSYVKFL   62 (179)
Q Consensus         3 d~~i~vwd~~~~~---~~~~~-~~~~~v~~~~~~~~~~~~~~~~-~~~~~~----~~~-----------~~~~i~~~~~~   62 (179)
                      ||.++.|.-..-.   -++.+ .|-..|.+++.+-++ .++.+. .....+    +..           -.+.+ ++..+
T Consensus        29 DGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a-~wv~s  106 (558)
T KOG0882|consen   29 DGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFA-EWVTS  106 (558)
T ss_pred             chhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEeeccchhhhcccccCCCce-EEecC
Confidence            5677777643211   22222 256778888888888 455553 212111    110           11111 11222


Q ss_pred             eC---CeEEEec-CCCcEEEEecCCC--cceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCC-Cccc---ccc
Q 038439           63 SN---DELASAS-TDSTLRLWDVKEN--LPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEI-SKPV---TWH  132 (179)
Q Consensus        63 ~~---~~l~~~~-~d~~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~-~~~~---~~~  132 (179)
                      +.   ..++.+. .++.+.++|-...  +....-+-|.++|..+.+++-+..+++....|.|.-|.... .+..   ..+
T Consensus       107 kGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~  186 (558)
T KOG0882|consen  107 KGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNF  186 (558)
T ss_pred             CCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccc
Confidence            32   2444333 4678888886643  22333446889999999999999999999999999999873 1111   111


Q ss_pred             ccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          133 RFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      .+....-...+... .....++.|+|++..+.+-+.|..|+++++.+
T Consensus       187 ~~K~eTdLy~f~K~-Kt~pts~Efsp~g~qistl~~DrkVR~F~~Kt  232 (558)
T KOG0882|consen  187 ELKHETDLYGFPKA-KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKT  232 (558)
T ss_pred             cccccchhhccccc-ccCccceEEccccCcccccCcccEEEEEEecc
Confidence            11111111111222 55678999999999999999999999998753

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.11  E-value=0.00035  Score=53.31  Aligned_cols=120  Identities=13%  Similarity=0.196  Sum_probs=85.1

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEEcCC-----CCeEEEEeCC------------Ccee-eecccCceeEEEEe
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPG-----SSNYIAKYQS------------TAPC-VHGHKKAVSYVKFL   62 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~------------~~~~-~~~~~~~i~~~~~~   62 (179)
                      |+||+|.|-.+.+.+....+..+.++.+++++|+     ..++++.|..            ...+ +....++|.++.|.
T Consensus        90 S~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~  169 (846)
T KOG2066|consen   90 SDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWR  169 (846)
T ss_pred             cCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEec
Confidence            6899999999999988888999999999999998     3355665522            2222 55567899999997


Q ss_pred             eCCeEEEecCCCcEEEEecCCCcceeeecCCCCCe------EEEEEeeCCCEEEEeccCCcEEEEEcC
Q 038439           63 SNDELASASTDSTLRLWDVKENLPVRTFRGHMNEK------NFVGLTVNSEYIACGSESNEVYVYHKE  124 (179)
Q Consensus        63 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v------~~~~~~~~~~~~~~~~~d~~v~vwd~~  124 (179)
                      - ++++-++.+| |++||...++.+..+......+      ..+.|.++.+ ++.| ...+|++..++
T Consensus       170 g-~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  170 G-NLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK  233 (846)
T ss_pred             C-cEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence            4 4666666555 8999999888777665433322      3466766554 4444 44568888877

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.10  E-value=6.8e-05  Score=54.50  Aligned_cols=123  Identities=7%  Similarity=0.065  Sum_probs=75.4

Q ss_pred             cEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-CCCce-----------e--eecccCceeEEEEeeC-CeEE-
Q 038439            5 KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-QSTAP-----------C--VHGHKKAVSYVKFLSN-DELA-   68 (179)
Q Consensus         5 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~-----------~--~~~~~~~i~~~~~~~~-~~l~-   68 (179)
                      .+.++|+++++........+.-..-+|+|+|++++.+. +.+.+           +  +....+.-..-.|+|+ ..++ 
T Consensus       219 ~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf  298 (425)
T COG0823         219 RIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVF  298 (425)
T ss_pred             eEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEE
Confidence            57888988888777777777778889999998777776 11111           1  1212222224568899 5554 


Q ss_pred             EecCCCc--EEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc-CCc--EEEEEcCCCcc
Q 038439           69 SASTDST--LRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE-SNE--VYVYHKEISKP  128 (179)
Q Consensus        69 ~~~~d~~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~~--v~vwd~~~~~~  128 (179)
                      +.+..|.  |.+.|...+.. ..+......-..-.|+|||++|+..+. +|.  |.+.|+.++..
T Consensus       299 ~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~  362 (425)
T COG0823         299 TSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK  362 (425)
T ss_pred             EeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence            4455555  45556554433 444333332236789999999876664 344  66777766553

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.05  E-value=0.00028  Score=51.38  Aligned_cols=142  Identities=17%  Similarity=0.165  Sum_probs=81.3

Q ss_pred             CCCceeEEEEcCCCCeEEEEe-CCCc---ee-----------eecccCceeEEEEeeC--CeEEEecCCCc--EEEEecC
Q 038439           22 MKANICCVKYNPGSSNYIAKY-QSTA---PC-----------VHGHKKAVSYVKFLSN--DELASASTDST--LRLWDVK   82 (179)
Q Consensus        22 ~~~~v~~~~~~~~~~~~~~~~-~~~~---~~-----------~~~~~~~i~~~~~~~~--~~l~~~~~d~~--v~iwd~~   82 (179)
                      ....+..-+|+|++..+.... ..++   ..           +-...+.-...+|+|+  ..+++...|+.  |.+.|+.
T Consensus       191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~  270 (425)
T COG0823         191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD  270 (425)
T ss_pred             cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence            455678888999887766554 1111   11           1111122234579999  44556666775  5566777


Q ss_pred             CCcceeeecCCCCCeEEEEEeeCCCEEEEecc-CCc--EEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccC
Q 038439           83 ENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE-SNE--VYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD  159 (179)
Q Consensus        83 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~~--v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  159 (179)
                      .+. +..+....+.-..-.|+|||++++-.+. .|.  |.+++++.+.. ..+...            ...-....|+|+
T Consensus       271 ~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~------------~~~~~~p~~Spd  336 (425)
T COG0823         271 GKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFS------------GGGNSNPVWSPD  336 (425)
T ss_pred             CCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeecc------------CCCCcCccCCCC
Confidence            665 3334443443446679999999875543 444  56666665554 222221            111226779999


Q ss_pred             CCeEEEEeCC-Cc--EEEEee
Q 038439          160 SPTMLTANSQ-GT--IKVLVL  177 (179)
Q Consensus       160 ~~~l~~~~~d-g~--i~iwd~  177 (179)
                      |++++..+.. |.  |.+.|+
T Consensus       337 G~~i~~~~~~~g~~~i~~~~~  357 (425)
T COG0823         337 GDKIVFESSSGGQWDIDKNDL  357 (425)
T ss_pred             CCEEEEEeccCCceeeEEecc
Confidence            9999887753 44  444443

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=98.02  E-value=0.00056  Score=50.75  Aligned_cols=142  Identities=9%  Similarity=0.109  Sum_probs=89.3

Q ss_pred             CCceeEEEEcCCCCeEEEEe---CCCcee-----eecccCceeEEEEeeC-----CeEEEecCCCcEEEEecCC-----C
Q 038439           23 KANICCVKYNPGSSNYIAKY---QSTAPC-----VHGHKKAVSYVKFLSN-----DELASASTDSTLRLWDVKE-----N   84 (179)
Q Consensus        23 ~~~v~~~~~~~~~~~~~~~~---~~~~~~-----~~~~~~~i~~~~~~~~-----~~l~~~~~d~~v~iwd~~~-----~   84 (179)
                      -.++..++|. ||++++.+.   ..+++.     .-+.-..|..+.|.|-     ..+++.-..+.|.+|.+..     .
T Consensus        19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~   97 (671)
T PF15390_consen   19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSKVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERN   97 (671)
T ss_pred             hccccceEec-CCCEEEEEeeeeeCCccccCCccEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccc
Confidence            3578999998 555666655   333322     4455567889999986     3577777788999999862     2


Q ss_pred             cceeeecCCCC-----CeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccC
Q 038439           85 LPVRTFRGHMN-----EKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD  159 (179)
Q Consensus        85 ~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  159 (179)
                      +.+....++..     -...+.|+|....+++-.....-.+++++............           .+.|.|.+|.+|
T Consensus        98 K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~-----------~G~IhCACWT~D  166 (671)
T PF15390_consen   98 KLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT-----------SGLIHCACWTKD  166 (671)
T ss_pred             cceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC-----------CceEEEEEecCc
Confidence            33222222111     12346799998888776655544566766543322222211           678999999999


Q ss_pred             CCeEEEEeC-CCcEEEEe
Q 038439          160 SPTMLTANS-QGTIKVLV  176 (179)
Q Consensus       160 ~~~l~~~~~-dg~i~iwd  176 (179)
                      |+.|+++-. .=.-++||
T Consensus       167 G~RLVVAvGSsLHSyiWd  184 (671)
T PF15390_consen  167 GQRLVVAVGSSLHSYIWD  184 (671)
T ss_pred             CCEEEEEeCCeEEEEEec
Confidence            988766543 33567787

>smart00320 WD40 WD40 repeats

Probab=97.99  E-value=2.4e-05  Score=35.75  Aligned_cols=32  Identities=47%  Similarity=0.779  Sum_probs=29.1

Q ss_pred             eecccCceeEEEEeeC-CeEEEecCCCcEEEEe
Q 038439           49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWD   80 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd   80 (179)
                      +..|...|.++.|.+. ..+++++.|+.+++|+
T Consensus         8 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        8 LKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            6678889999999998 8999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.99  E-value=0.00036  Score=50.40  Aligned_cols=86  Identities=10%  Similarity=0.157  Sum_probs=54.6

Q ss_pred             eeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEcc-----CC--
Q 038439           88 RTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKS-----DS--  160 (179)
Q Consensus        88 ~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~--  160 (179)
                      ..+....++|.+++.+ |=-+++.|.++|.+.|.|+|....+.......+.    ........++++.|..     |+  
T Consensus        80 ~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~----~~~~~~~~vt~ieF~vm~~~~D~yS  154 (395)
T PF08596_consen   80 TLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESF----LSKSSSSYVTSIEFSVMTLGGDGYS  154 (395)
T ss_dssp             EEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG------T-SS----EEEEEEEEEE-TTSSSE
T ss_pred             hheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccc----cccccccCeeEEEEEEEecCCCccc
Confidence            3344557889999987 5458999999999999999887766553333210    0111155678888862     33  


Q ss_pred             -CeEEEEeCCCcEEEEeec
Q 038439          161 -PTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       161 -~~l~~~~~dg~i~iwd~~  178 (179)
                       -.+++|+..|.+.+|.+-
T Consensus       155 Si~L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  155 SICLLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEEEEEEETTSEEEEEEEE
T ss_pred             ceEEEEEeCCCCEEEEEEe
Confidence             468899999999999763

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.97  E-value=0.0001  Score=57.81  Aligned_cols=102  Identities=15%  Similarity=0.132  Sum_probs=73.7

Q ss_pred             CeEEEecCCCcEEEEecCCC-cceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCc
Q 038439           65 DELASASTDSTLRLWDVKEN-LPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTD  143 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~  143 (179)
                      ..++.|+..|.+-..|.... .+...=....++|.+++|+.+|+.++.|-.+|.|.+||...+++++.+....+.     
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap-----  174 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP-----  174 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCc-----
Confidence            56888888888888887653 111222234678999999999999999999999999999999888776654321     


Q ss_pred             ccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          144 EDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       144 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                          ...+..+.+..++..++++...|.  +|.+
T Consensus       175 ----~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  175 ----VTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ----cceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence                334445555555667888877776  5543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.89  E-value=0.00028  Score=54.70  Aligned_cols=117  Identities=14%  Similarity=0.165  Sum_probs=84.8

Q ss_pred             CccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeCC-------------------Ccee--eecccCceeEEE
Q 038439            3 YGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQS-------------------TAPC--VHGHKKAVSYVK   60 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~-------------------~~~~--~~~~~~~i~~~~   60 (179)
                      -|+|.+-|.++.+.++++. |.+.|..+..+  |+.++++|..                   .+.+  +.-+.++ .-+.
T Consensus       196 ~G~V~LrD~~s~~~iht~~aHs~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flr  272 (1118)
T KOG1275|consen  196 RGTVFLRDPNSFETIHTFDAHSGSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLR  272 (1118)
T ss_pred             cceEEeecCCcCceeeeeeccccceeeeecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhh
Confidence            5889999999999999997 88888776664  5578888811                   1111  1112222 4467


Q ss_pred             EeeC--CeEEEecCCCcEEEEe---cCCC-cceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEE
Q 038439           61 FLSN--DELASASTDSTLRLWD---VKEN-LPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYH  122 (179)
Q Consensus        61 ~~~~--~~l~~~~~d~~v~iwd---~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd  122 (179)
                      |+|.  ..++.++..|...+-|   +... ..+..+....+.+..++++++++.++.|..+|.|.+|-
T Consensus       273 f~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  273 FHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             hcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            8888  7888999999999988   3332 12233333445588999999999999999999999998

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.83  E-value=0.00011  Score=35.89  Aligned_cols=34  Identities=24%  Similarity=0.264  Sum_probs=29.9

Q ss_pred             CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcc
Q 038439           94 MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKP  128 (179)
Q Consensus        94 ~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~  128 (179)
                      ...|..++|+|...++|.++.+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            456889999999999999999999999999 5554

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.82  E-value=0.0043  Score=45.09  Aligned_cols=97  Identities=10%  Similarity=0.098  Sum_probs=64.4

Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCCCC-CeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCc
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGHMN-EKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTD  143 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~  143 (179)
                      +.++.++.++.+..+|..+++.+-....... ...+...  .+.+++.++.+|.+.+.|..+++.+......        
T Consensus       295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~--------  364 (394)
T PRK11138        295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVD--------  364 (394)
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC--------
Confidence            6777888899999999998876544322111 1111112  2557788899999999999999887665542        


Q ss_pred             ccCCcceEE-EEEEccCCCeEEEEeCCCcEEEEee
Q 038439          144 EDAGSYFIS-AVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       144 ~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                          ...+. ...+  .+..|+.++.||.++.+++
T Consensus       365 ----~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        365 ----SSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             ----CCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence                11121 1122  2457889999999998865

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.78  E-value=6.7e-06  Score=60.79  Aligned_cols=113  Identities=17%  Similarity=0.337  Sum_probs=78.7

Q ss_pred             eecccCceeEEEEeeC--CeEEEec----CCCcEEEEecCCC--ccee--eecC-CCCCeEEEEEeeCCCEEEEeccCCc
Q 038439           49 VHGHKKAVSYVKFLSN--DELASAS----TDSTLRLWDVKEN--LPVR--TFRG-HMNEKNFVGLTVNSEYIACGSESNE  117 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~--~~l~~~~----~d~~v~iwd~~~~--~~~~--~~~~-~~~~v~~~~~~~~~~~~~~~~~d~~  117 (179)
                      ..++..+.++++|++-  +.|+.|-    .|..+.|||+.++  .+..  .+.. ......+++|-.+.+.+.+|...+.
T Consensus        98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~  177 (783)
T KOG1008|consen   98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRS  177 (783)
T ss_pred             cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccch
Confidence            5567778899999987  6666663    3557999999875  2221  1222 2334557888888888999999999


Q ss_pred             EEEEEcCCC-ccccccccCCCCCCCCcccCCcceEEEEEEcc-CCCeEEEEeCCCcEEEEe
Q 038439          118 VYVYHKEIS-KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKS-DSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       118 v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd  176 (179)
                      ++++|++.. .....+.              ...+..+...| .++++++-. ||.|.+||
T Consensus       178 ~~ifdlRqs~~~~~svn--------------Tk~vqG~tVdp~~~nY~cs~~-dg~iAiwD  223 (783)
T KOG1008|consen  178 VHIFDLRQSLDSVSSVN--------------TKYVQGITVDPFSPNYFCSNS-DGDIAIWD  223 (783)
T ss_pred             hhhhhhhhhhhhhhhhh--------------hhhcccceecCCCCCceeccc-cCceeecc
Confidence            999999843 2232222              33466677788 777776655 99999999

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.77  E-value=0.0045  Score=41.69  Aligned_cols=70  Identities=17%  Similarity=0.120  Sum_probs=55.8

Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccccc
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF  134 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~  134 (179)
                      ++++.|+..+.+.+.+..++.+...+..-...-......+++..++.|+.|+..+..|.++...+...+.
T Consensus        64 dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc  133 (354)
T KOG4649|consen   64 DFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC  133 (354)
T ss_pred             CEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence            7789999999999999999988877764332222345678899999999999999999999877765443

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.74  E-value=0.0021  Score=48.57  Aligned_cols=59  Identities=12%  Similarity=0.084  Sum_probs=42.6

Q ss_pred             CCCEEEEeccCCcEEEEEcCC-----CccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEeec
Q 038439          105 NSEYIACGSESNEVYVYHKEI-----SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVLA  178 (179)
Q Consensus       105 ~~~~~~~~~~d~~v~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~  178 (179)
                      +|++...  .++.|.+.|.++     .+.+..+..             ....+.+.++|||+++++++. ++++.|.|++
T Consensus       287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV-------------GKsPHGV~vSPDGkylyVanklS~tVSVIDv~  351 (635)
T PRK02888        287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV-------------PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVR  351 (635)
T ss_pred             CCCEEEE--CCCEEEEEECCccccCCcceEEEEEC-------------CCCccceEECCCCCEEEEeCCCCCcEEEEECh
Confidence            5665554  256788999887     233333333             556788999999999888776 8999999975

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.73  E-value=0.002  Score=43.27  Aligned_cols=103  Identities=8%  Similarity=0.003  Sum_probs=72.2

Q ss_pred             EeeC--CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCC
Q 038439           61 FLSN--DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPD  138 (179)
Q Consensus        61 ~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~  138 (179)
                      ..++  .+++.||..+.+.--|..+++....-.. ...+.+-+.- -|++++.|+..|.+++.+..++.....+...   
T Consensus        18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~---   92 (354)
T KOG4649|consen   18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL---   92 (354)
T ss_pred             EecCCceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh---
Confidence            3445  6777888888888888888876543221 1222222211 4788999999999999999999877665542   


Q ss_pred             CCCCcccCCcceE-EEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          139 MDDTDEDAGSYFI-SAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       139 ~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                                ..| ......+++..+.+|+.|++.+..|.+
T Consensus        93 ----------~~vk~~a~~d~~~glIycgshd~~~yalD~~  123 (354)
T KOG4649|consen   93 ----------ETVKVRAQCDFDGGLIYCGSHDGNFYALDPK  123 (354)
T ss_pred             ----------hhhccceEEcCCCceEEEecCCCcEEEeccc
Confidence                      122 234456789999999999999988865

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.73  E-value=8.8e-05  Score=57.09  Aligned_cols=107  Identities=14%  Similarity=0.150  Sum_probs=79.4

Q ss_pred             eEEEEeeC-CeEEEecC----CCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccc
Q 038439           57 SYVKFLSN-DELASAST----DSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTW  131 (179)
Q Consensus        57 ~~~~~~~~-~~l~~~~~----d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~  131 (179)
                      +-..|+|. .+++.++.    .|.|.||- .+|++-+.+.- +-.+.+++|+|..-.++.|-.-|.+.+|...+.+.-..
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv   96 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV   96 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence            34579999 88877763    57788874 55665544332 22356799999887888998899999999876543222


Q ss_pred             cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      ..            .|..+|..+.|+++|..++++..-|.+.+|.+
T Consensus        97 ~~------------th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~  130 (1416)
T KOG3617|consen   97 VE------------THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRY  130 (1416)
T ss_pred             cc------------CCCCCceeEEecCCCCeEEEcCCCceeEEEEe
Confidence            11            12778999999999999999999999999975

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.73  E-value=0.0004  Score=53.41  Aligned_cols=115  Identities=10%  Similarity=0.096  Sum_probs=72.6

Q ss_pred             EeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCC-eEEEEEeeCCCEEEEeccCC-----cEEEEEcCCCcccc-cc
Q 038439           61 FLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNE-KNFVGLTVNSEYIACGSESN-----EVYVYHKEISKPVT-WH  132 (179)
Q Consensus        61 ~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~d~-----~v~vwd~~~~~~~~-~~  132 (179)
                      |++. +.++.|+.+|.|.+.+-+ -+.++.++.+... +..+....+..++++.++|+     .+++||++.-+.-. ..
T Consensus        31 ~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~  109 (933)
T KOG2114|consen   31 CSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ  109 (933)
T ss_pred             EcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence            5677 899999999999888743 3445677776666 44444433446777776654     48999987542211 00


Q ss_pred             ccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439          133 RFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  176 (179)
                      ....+.......+....++..++.+.+-+.+++|-.+|.|..+.
T Consensus       110 c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~  153 (933)
T KOG2114|consen  110 CLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYK  153 (933)
T ss_pred             eeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEc
Confidence            00000000000111256788899999999999999999988763

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.70  E-value=0.0046  Score=49.67  Aligned_cols=140  Identities=15%  Similarity=0.200  Sum_probs=84.3

Q ss_pred             CceeEEEEcCCCCeEEEEeCCCcee-----------eecccCceeEEEEeeC-CeEEEecCCCcEEEEec----CCC---
Q 038439           24 ANICCVKYNPGSSNYIAKYQSTAPC-----------VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDV----KEN---   84 (179)
Q Consensus        24 ~~v~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~----~~~---   84 (179)
                      ..|.++.|..+...++++...+..+           ...-...|.+++|+|| ..++..+..+++.+-.-    -..   
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L  148 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL  148 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence            4688888877765555544222222           2334567999999999 88877777777654321    111   


Q ss_pred             ----------------cceeeecCC---------------------CCCeEEEEEeeCCCEEEEe-----ccCCcEEEEE
Q 038439           85 ----------------LPVRTFRGH---------------------MNEKNFVGLTVNSEYIACG-----SESNEVYVYH  122 (179)
Q Consensus        85 ----------------~~~~~~~~~---------------------~~~v~~~~~~~~~~~~~~~-----~~d~~v~vwd  122 (179)
                                      +.-.+|.+.                     ...-..+.|.-||+++++.     ...+.+++||
T Consensus       149 ~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~d  228 (1265)
T KOG1920|consen  149 DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYD  228 (1265)
T ss_pred             ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEec
Confidence                            111122210                     0112348899999999883     3337899999


Q ss_pred             cCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC---CCcEEEEe
Q 038439          123 KEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS---QGTIKVLV  176 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd  176 (179)
                      .+ +..-..-...            ...-.+++|-|.|..+++-..   |+.|.+|.
T Consensus       229 rE-g~Lns~se~~------------~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE  272 (1265)
T KOG1920|consen  229 RE-GALNSTSEPV------------EGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE  272 (1265)
T ss_pred             cc-chhhcccCcc------------cccccceeecCCCCeEeeeeecCCCCcEEEEe
Confidence            87 4432222211            233467899999999887443   55677775

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.66  E-value=0.0031  Score=45.80  Aligned_cols=159  Identities=7%  Similarity=-0.052  Sum_probs=83.0

Q ss_pred             CCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEE--EEee---C
Q 038439            2 AYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYV--KFLS---N   64 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~--~~~~---~   64 (179)
                      .+|.+.-+|.++++.+-..+....+.+--.-.++ .+++..          .+++.+  .... .+...+  .-+|   +
T Consensus       128 ~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~-~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~~~~~sP~v~~  205 (394)
T PRK11138        128 EKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDG-LVLVHTSNGMLQALNESDGAVKWTVNLD-VPSLTLRGESAPATAF  205 (394)
T ss_pred             CCCEEEEEECCCCCCcccccCCCceecCCEEECC-EEEEECCCCEEEEEEccCCCEeeeecCC-CCcccccCCCCCEEEC
Confidence            4678888999888877766544333221000122 333322          344444  1111 110000  0122   1


Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCCCC-------CeEEEEEee--CCCEEEEeccCCcEEEEEcCCCccccccccC
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGHMN-------EKNFVGLTV--NSEYIACGSESNEVYVYHKEISKPVTWHRFS  135 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~  135 (179)
                      +.++.++.++.+...|..+++.+........       ....+..+|  .+..++.++.++.+..+|..+++.+......
T Consensus       206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~  285 (394)
T PRK11138        206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG  285 (394)
T ss_pred             CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC
Confidence            4667778889999999998876654431110       001111222  2456777778999999999999876544321


Q ss_pred             CCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          136 SPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       136 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ..              ..+.  ..+..++.++.+|.+..+|.+
T Consensus       286 ~~--------------~~~~--~~~~~vy~~~~~g~l~ald~~  312 (394)
T PRK11138        286 SV--------------NDFA--VDGGRIYLVDQNDRVYALDTR  312 (394)
T ss_pred             Cc--------------cCcE--EECCEEEEEcCCCeEEEEECC
Confidence            10              1111  134556666666666666543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.61  E-value=0.0035  Score=48.57  Aligned_cols=119  Identities=18%  Similarity=0.341  Sum_probs=73.6

Q ss_pred             eecccCc-eeEEEEeeC-CeEEEecCCC-----cEEEEecCCC------cce---eee--cC--CCCCeEEEEEeeCCCE
Q 038439           49 VHGHKKA-VSYVKFLSN-DELASASTDS-----TLRLWDVKEN------LPV---RTF--RG--HMNEKNFVGLTVNSEY  108 (179)
Q Consensus        49 ~~~~~~~-i~~~~~~~~-~~l~~~~~d~-----~v~iwd~~~~------~~~---~~~--~~--~~~~v~~~~~~~~~~~  108 (179)
                      ++++... |..+....+ ++|++.+.|+     .+++||+...      .++   +.+  +.  ...++.+++.+.+-..
T Consensus        60 fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~  139 (933)
T KOG2114|consen   60 FQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKT  139 (933)
T ss_pred             heecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccE
Confidence            4555555 444433344 6788777655     4899998753      122   111  11  2567888999999889


Q ss_pred             EEEeccCCcEEEEEcCCCcc---ccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          109 IACGSESNEVYVYHKEISKP---VTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       109 ~~~~~~d~~v~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      +|+|-.+|.|..+.-.-.+.   ...+...           +..+|+.+.+..++..++....-..|.+|.+.
T Consensus       140 Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~-----------~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~  201 (933)
T KOG2114|consen  140 IVCGFTNGLVICYKGDILRDRGSRQDYSHR-----------GKEPITGLALRSDGKSVLFVATTEQVMLYSLS  201 (933)
T ss_pred             EEEEecCcEEEEEcCcchhccccceeeecc-----------CCCCceeeEEecCCceeEEEEecceeEEEEec
Confidence            99999999998885321111   1111111           16789999998888773333334467777654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.60  E-value=0.00031  Score=34.35  Aligned_cols=31  Identities=16%  Similarity=0.280  Sum_probs=28.1

Q ss_pred             cceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          148 SYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       148 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ...|..++|+|...+||.++.+|.|.+|.++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            5579999999999999999999999999863

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.56  E-value=0.0085  Score=40.57  Aligned_cols=150  Identities=10%  Similarity=0.120  Sum_probs=77.1

Q ss_pred             CCCceeEEEEcCCCCeEEEEeCC----------Ccee----eecccCceeEEEEeeCCeEEEec-CCCcEEEEecCCCc-
Q 038439           22 MKANICCVKYNPGSSNYIAKYQS----------TAPC----VHGHKKAVSYVKFLSNDELASAS-TDSTLRLWDVKENL-   85 (179)
Q Consensus        22 ~~~~v~~~~~~~~~~~~~~~~~~----------~~~~----~~~~~~~i~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~-   85 (179)
                      ....+..++|+|+...++++.+.          ++.+    +.+ .+..-.|++..++.++..+ .++.+.++++.... 
T Consensus        20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~   98 (248)
T PF06977_consen   20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTT   98 (248)
T ss_dssp             --S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----T
T ss_pred             ccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEecccc
Confidence            34569999999998789888722          2222    222 2345567776664444444 58889888884321 


Q ss_pred             -----ceeeec-----CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCC---CccccccccCCCCCCCCcccCCcceEE
Q 038439           86 -----PVRTFR-----GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEI---SKPVTWHRFSSPDMDDTDEDAGSYFIS  152 (179)
Q Consensus        86 -----~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~  152 (179)
                           ....+.     .+...+..++|+|.++.|+++-+.....+|.++.   ..............    ....-..+.
T Consensus        99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~S  174 (248)
T PF06977_consen   99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD----DKLFVRDLS  174 (248)
T ss_dssp             T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-----HT--SS---
T ss_pred             ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc----ccceecccc
Confidence                 111221     2345688999999887777777777777777664   11111110000000    000034578


Q ss_pred             EEEEccCC-CeEEEEeCCCcEEEEe
Q 038439          153 AVCWKSDS-PTMLTANSQGTIKVLV  176 (179)
Q Consensus       153 ~~~~~~~~-~~l~~~~~dg~i~iwd  176 (179)
                      .++++|.. .+++.+..+..|.++|
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d  199 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELD  199 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE-
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEEC
Confidence            88899854 4555555566666665

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.50  E-value=0.016  Score=40.86  Aligned_cols=118  Identities=8%  Similarity=0.102  Sum_probs=70.8

Q ss_pred             ccEEEEEcCCc-----e--eEEeecCCCceeEEEEcCCCCeEEEEe---------CCCc-ee-eecc--cCceeEEEEee
Q 038439            4 GKVKVWCTRQE-----A--SVLNIDMKANICCVKYNPGSSNYIAKY---------QSTA-PC-VHGH--KKAVSYVKFLS   63 (179)
Q Consensus         4 ~~i~vwd~~~~-----~--~~~~~~~~~~v~~~~~~~~~~~~~~~~---------~~~~-~~-~~~~--~~~i~~~~~~~   63 (179)
                      |.|.++++.+.     +  .+.....+++|++++-- .+ .++++.         ...+ .+ ...+  .-.+.++....
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~  139 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFK  139 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEET
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccc
Confidence            89999999884     2  33344578899999877 44 444443         2222 22 1112  22444444332


Q ss_pred             CCeEEEecCCCcEEEEecCC-Ccceeeec--CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcC
Q 038439           64 NDELASASTDSTLRLWDVKE-NLPVRTFR--GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKE  124 (179)
Q Consensus        64 ~~~l~~~~~d~~v~iwd~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~  124 (179)
                       ++++.|.....+.++..+. ...+..+.  .....+.++.+-++++.++.+..+|.+.++...
T Consensus       140 -~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  140 -NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             -TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             -cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence             6888888888888775443 22233332  234457788888777789999999999999876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.47  E-value=0.0033  Score=49.09  Aligned_cols=98  Identities=16%  Similarity=0.142  Sum_probs=64.5

Q ss_pred             eEEEecCCCcEEEEecCCCc--cee-eec--CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCC
Q 038439           66 ELASASTDSTLRLWDVKENL--PVR-TFR--GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMD  140 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~~--~~~-~~~--~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~  140 (179)
                      ..+.|-.+..+..||.|-..  ++. ..+  .......|++-..+| +||+|+.+|.|++||.- +..-.+. +.+-   
T Consensus       544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~-lp~l---  617 (794)
T PF08553_consen  544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTA-LPGL---  617 (794)
T ss_pred             ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhc-CCCC---
Confidence            45666777889999988532  221 111  123345667766666 78999999999999943 3221111 1111   


Q ss_pred             CCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          141 DTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       141 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                             +.+|..+..+.||+++++.+.. .+.+++.
T Consensus       618 -------G~pI~~iDvt~DGkwilaTc~t-yLlLi~t  646 (794)
T PF08553_consen  618 -------GDPIIGIDVTADGKWILATCKT-YLLLIDT  646 (794)
T ss_pred             -------CCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence                   6789999999999999877754 5666653

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.45  E-value=0.0047  Score=45.52  Aligned_cols=119  Identities=13%  Similarity=0.145  Sum_probs=79.6

Q ss_pred             cEEEEEcCCceeEEeecCCCceeEEEEcCCCC--e------EEEEeCC----------Cc-ee--eecc----cCceeEE
Q 038439            5 KVKVWCTRQEASVLNIDMKANICCVKYNPGSS--N------YIAKYQS----------TA-PC--VHGH----KKAVSYV   59 (179)
Q Consensus         5 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~--~------~~~~~~~----------~~-~~--~~~~----~~~i~~~   59 (179)
                      .++=.|++.|+.+........|.-+.+.|+..  +      ++-..+.          +. .+  ..+|    .....|+
T Consensus       357 ~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~  436 (644)
T KOG2395|consen  357 KLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCF  436 (644)
T ss_pred             cceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccccccccee
Confidence            45556778888888877666688888888642  1      2222200          11 11  1222    2334555


Q ss_pred             EEeeCCeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcC
Q 038439           60 KFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKE  124 (179)
Q Consensus        60 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~  124 (179)
                      +-..+++++.||.+|.||+||-...+....+.+-..+|..+..+.+|++|+..+ +.++.+.++.
T Consensus       437 aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  437 ATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             eecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence            554458999999999999999755555556667788999999999999987655 5667777754

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.44  E-value=0.0098  Score=40.27  Aligned_cols=121  Identities=8%  Similarity=0.174  Sum_probs=72.8

Q ss_pred             eecccCceeEEEEeeC-C-eEEEecCCCcEEEEecCCCcceeeecCC-CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCC
Q 038439           49 VHGHKKAVSYVKFLSN-D-ELASASTDSTLRLWDVKENLPVRTFRGH-MNEKNFVGLTVNSEYIACGSESNEVYVYHKEI  125 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~-~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~  125 (179)
                      +.+-...++.+.|.|+ + ++++....+.|...+.. ++.++.+.-. .+....+++.-++.++++--.++.+.++++..
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~   95 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD   95 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence            4455566999999998 5 55666677888888864 7777766533 35678899988887777766689999999844


Q ss_pred             Cc-cc-----cccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          126 SK-PV-----TWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       126 ~~-~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      .. .+     ..+.+...       ..+...+..++|.|.++.|+++-...-..+|.+
T Consensus        96 ~~~~~~~~~~~~~~l~~~-------~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~  146 (248)
T PF06977_consen   96 DTTSLDRADVQKISLGFP-------NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEV  146 (248)
T ss_dssp             --TT--EEEEEEEE---S----------SS--EEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred             cccccchhhceEEecccc-------cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEE
Confidence            22 11     11222111       111456899999998888888777666666654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.43  E-value=0.024  Score=41.15  Aligned_cols=162  Identities=14%  Similarity=0.094  Sum_probs=104.2

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCC--Ccee--ee-----------cccCceeEEEEeeC-Ce
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQS--TAPC--VH-----------GHKKAVSYVKFLSN-DE   66 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~--~~-----------~~~~~i~~~~~~~~-~~   66 (179)
                      ++.|.+.|..+.+.............++++|++..++++-..  ...+  +.           .-..+ ..+++.|+ ..
T Consensus        95 ~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~  173 (381)
T COG3391          95 SNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNK  173 (381)
T ss_pred             CCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCe
Confidence            577888888877777777766688899999999777666521  1111  11           11123 67888899 54


Q ss_pred             E-EEecCCCcEEEEecCCCccee-----eecCCCCCeEEEEEeeCCCEEEEeccC---CcEEEEEcCCCccccccccCCC
Q 038439           67 L-ASASTDSTLRLWDVKENLPVR-----TFRGHMNEKNFVGLTVNSEYIACGSES---NEVYVYHKEISKPVTWHRFSSP  137 (179)
Q Consensus        67 l-~~~~~d~~v~iwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~d---~~v~vwd~~~~~~~~~~~~~~~  137 (179)
                      + ++-..++.|.+.|.......+     .+. .......+.++|+|.++++....   +.+...|..++.....-.....
T Consensus       174 vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~  252 (381)
T COG3391         174 VYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGS  252 (381)
T ss_pred             EEEEecCCCeEEEEeCCCcceeccccccccc-cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccccc
Confidence            4 444578899999977654442     122 12334678999999977665443   5888899888765543111100


Q ss_pred             CCCCCcccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEee
Q 038439          138 DMDDTDEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVL  177 (179)
Q Consensus       138 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~  177 (179)
                                . ....+...|+|+.+.+... .+.+.+-|.
T Consensus       253 ----------~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~  282 (381)
T COG3391         253 ----------G-APRGVAVDPAGKAAYVANSQGGTVSVIDG  282 (381)
T ss_pred             ----------C-CCCceeECCCCCEEEEEecCCCeEEEEeC
Confidence                      2 3456778888888877744 366666654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.43  E-value=0.02  Score=40.33  Aligned_cols=107  Identities=15%  Similarity=0.154  Sum_probs=67.8

Q ss_pred             EEeeC-CeEEEecCCCcEEEEecCCCcce--eeecCC----------CCCeEEEEEeeCCCEEEEecc---C-------C
Q 038439           60 KFLSN-DELASASTDSTLRLWDVKENLPV--RTFRGH----------MNEKNFVGLTVNSEYIACGSE---S-------N  116 (179)
Q Consensus        60 ~~~~~-~~l~~~~~d~~v~iwd~~~~~~~--~~~~~~----------~~~v~~~~~~~~~~~~~~~~~---d-------~  116 (179)
                      .+... +.++-.+.+|.|+--|+......  ..+..-          .+.-.-+++++....|++...   +       .
T Consensus       190 ~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt  269 (342)
T PF06433_consen  190 AYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT  269 (342)
T ss_dssp             EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred             ceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence            34334 56666788898888888754321  111110          122334778776555544322   1       2


Q ss_pred             cEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCC-eEEEE-eCCCcEEEEeecC
Q 038439          117 EVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSP-TMLTA-NSQGTIKVLVLAA  179 (179)
Q Consensus       117 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~~dg~i~iwd~~~  179 (179)
                      .|.++|+.+++.+..+.+             ...+.++..+.+.+ +|++. ..++.+.+||..+
T Consensus       270 eVWv~D~~t~krv~Ri~l-------------~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t  321 (342)
T PF06433_consen  270 EVWVYDLKTHKRVARIPL-------------EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT  321 (342)
T ss_dssp             EEEEEETTTTEEEEEEEE-------------EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred             EEEEEECCCCeEEEEEeC-------------CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence            488889999999888876             56788899988665 66554 4578999999764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.39  E-value=0.019  Score=43.93  Aligned_cols=139  Identities=12%  Similarity=0.064  Sum_probs=77.1

Q ss_pred             ceeEEEEcCCCCeEEEEeC------C-Ccee-e-e--cc------cCceeEEEEeeC-CeEEEecCC------------C
Q 038439           25 NICCVKYNPGSSNYIAKYQ------S-TAPC-V-H--GH------KKAVSYVKFLSN-DELASASTD------------S   74 (179)
Q Consensus        25 ~v~~~~~~~~~~~~~~~~~------~-~~~~-~-~--~~------~~~i~~~~~~~~-~~l~~~~~d------------~   74 (179)
                      .+.+.+++|+|..++++..      . ...+ + .  +.      ....+.-.|+|+ +.+.+.+..            +
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~g  430 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATG  430 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCCCc
Confidence            5788999999977766641      1 1122 1 1  10      123677889999 766666432            2


Q ss_pred             cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEE---EEcCCCccccc--cccCCCCCCCCcccCCcc
Q 038439           75 TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYV---YHKEISKPVTW--HRFSSPDMDDTDEDAGSY  149 (179)
Q Consensus        75 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~v---wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~  149 (179)
                      .+.+.++..++...   .....|..+.|+|||..++... ++.|++   -....++....  ..+...        - ..
T Consensus       431 ql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~--------l-~~  497 (591)
T PRK13616        431 QLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPG--------L-GD  497 (591)
T ss_pred             eEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecc--------c-CC
Confidence            22222333333222   2245699999999999887655 467776   44344431110  001000        0 23


Q ss_pred             eEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          150 FISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       150 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      .+..+.|..++.++ ++..++.-.+|.+
T Consensus       498 ~~~~l~W~~~~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        498 TAVSLDWRTGDSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             ccccceEecCCEEE-EEecCCCCceEEE
Confidence            35778999988854 5555555555644

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.38  E-value=0.026  Score=40.50  Aligned_cols=169  Identities=9%  Similarity=0.062  Sum_probs=79.1

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe----------------CCCcee--eeccc--CceeEEEEee
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY----------------QSTAPC--VHGHK--KAVSYVKFLS   63 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------------~~~~~~--~~~~~--~~i~~~~~~~   63 (179)
                      ..|.--|+.+++....+..+..+..+.|+|..+.+++-+                ..+..+  +..+.  ..+.-=-|.|
T Consensus       168 ~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~  247 (386)
T PF14583_consen  168 CRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP  247 (386)
T ss_dssp             EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T
T ss_pred             ceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC
Confidence            356667888888877778888999999999988888886                111111  11121  2223334777


Q ss_pred             C-CeEEE-----ecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCC----------------cEEEE
Q 038439           64 N-DELAS-----ASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESN----------------EVYVY  121 (179)
Q Consensus        64 ~-~~l~~-----~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~----------------~v~vw  121 (179)
                      + ..+..     +..+..|.-+|+.+++.......  ......-.++||++++-=+.|.                .|+++
T Consensus       248 DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~  325 (386)
T PF14583_consen  248 DGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLF  325 (386)
T ss_dssp             TSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------EEEEE
T ss_pred             CCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEe
Confidence            7 33322     22344677778877654332221  1233444567888776433332                45667


Q ss_pred             EcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEe-CCCcEEEEe
Q 038439          122 HKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN-SQGTIKVLV  176 (179)
Q Consensus       122 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd  176 (179)
                      +++.++..........-.  ....+....=....|+||+++++-.+ ..|...||-
T Consensus       326 ~~~~~~~~~l~~h~~sw~--v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~  379 (386)
T PF14583_consen  326 DVEAGRFRKLARHDTSWK--VLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL  379 (386)
T ss_dssp             ETTTTEEEEEEE---------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred             ccccCceeeeeeccCcce--eecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence            777655432222110000  00000011124588999999876544 477777764

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.32  E-value=0.033  Score=40.42  Aligned_cols=159  Identities=13%  Similarity=0.119  Sum_probs=106.0

Q ss_pred             EEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCCCcee--ee-ccc----------CceeEEEEeeC-C-eEEEe
Q 038439            6 VKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPC--VH-GHK----------KAVSYVKFLSN-D-ELASA   70 (179)
Q Consensus         6 i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~-~~~----------~~i~~~~~~~~-~-~l~~~   70 (179)
                      +.+++..+.+....+........+...|++..++++......+  +. .+.          ..-..+..++. . .++..
T Consensus        13 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~   92 (381)
T COG3391          13 VSVINTGTNKVTAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTT   92 (381)
T ss_pred             eEEEeecccEEEEEeecCCCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEec
Confidence            5677777666666666556778888888886666554111111  00 000          12235566666 4 55566


Q ss_pred             cCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc---CCcEEEEEcCCCccccccccCCCCCCCCcccCC
Q 038439           71 STDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE---SNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAG  147 (179)
Q Consensus        71 ~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  147 (179)
                      ..+..|.+.|....+.+....... ....++++|+++.++++..   ++.+.+.|..+.+.......             
T Consensus        93 ~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v-------------  158 (381)
T COG3391          93 GDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPV-------------  158 (381)
T ss_pred             CCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEec-------------
Confidence            667899999977766666554333 5678999999988776655   68899999988887766433             


Q ss_pred             cceEEEEEEccCCCeEEEEe-CCCcEEEEeec
Q 038439          148 SYFISAVCWKSDSPTMLTAN-SQGTIKVLVLA  178 (179)
Q Consensus       148 ~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~  178 (179)
                      ......+++.|+|+.++... .++.|.+.|.+
T Consensus       159 G~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~  190 (381)
T COG3391         159 GNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTS  190 (381)
T ss_pred             CCCcceEEECCCCCeEEEEecCCCeEEEEeCC
Confidence            21227899999999776666 68889888754

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=97.30  E-value=0.017  Score=45.14  Aligned_cols=82  Identities=17%  Similarity=0.135  Sum_probs=51.6

Q ss_pred             CCeEEEEEeeCCCEEEEeccCCcEEEEEcC-C-C--------ccccccccCCCCCCCCcccCCcceEEEEEEccC---CC
Q 038439           95 NEKNFVGLTVNSEYIACGSESNEVYVYHKE-I-S--------KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD---SP  161 (179)
Q Consensus        95 ~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~-~-~--------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~  161 (179)
                      -.|..+.++|+|++++..|..|.. |-.+. . +        +.....+.. +.....+...+...|..+.|+|.   +.
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~-~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTV-PVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEE-EechhhccCCCCceEEEEEEcCCCCCCC
Confidence            357888999999999888876644 44432 1 1        110000000 00011111222568999999995   58


Q ss_pred             eEEEEeCCCcEEEEeec
Q 038439          162 TMLTANSQGTIKVLVLA  178 (179)
Q Consensus       162 ~l~~~~~dg~i~iwd~~  178 (179)
                      .|++-+.|+.+++||+.
T Consensus       163 ~l~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDIS  179 (717)
T ss_pred             eEEEEecCCEEEEEecC
Confidence            99999999999999975

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.29  E-value=0.0098  Score=45.47  Aligned_cols=115  Identities=8%  Similarity=0.040  Sum_probs=60.6

Q ss_pred             ccCceeEEEEeeC-CeEEEec------CCC--cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccC-CcEEEE
Q 038439           52 HKKAVSYVKFLSN-DELASAS------TDS--TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSES-NEVYVY  121 (179)
Q Consensus        52 ~~~~i~~~~~~~~-~~l~~~~------~d~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d-~~v~vw  121 (179)
                      ....+.+.+++|+ ..++...      .|.  .+.+++.. +.. ..+.... ....-.|+|+|..+++.... ..+++.
T Consensus       348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~-~~t~PsWspDG~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGH-SLTRPSWSLDADAVWVVVDGNTVVRVI  424 (591)
T ss_pred             cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCC-CCCCceECCCCCceEEEecCcceEEEe
Confidence            3346788899999 6555443      233  45555542 222 3332222 36778899998877666432 222222


Q ss_pred             EcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEE
Q 038439          122 HKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV  174 (179)
Q Consensus       122 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  174 (179)
                      +......+............    .....|..+.|+|||..++... +|.|.+
T Consensus       425 ~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        425 RDPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             ccCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence            22111111111111110000    0044699999999999888766 466655

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.27  E-value=0.028  Score=38.53  Aligned_cols=140  Identities=14%  Similarity=0.176  Sum_probs=81.5

Q ss_pred             CceeEEeecCCCceeEEEEcCCCCeEEEEe-CCC------------cee---------eecccCceeEEEEeeC-CeEEE
Q 038439           13 QEASVLNIDMKANICCVKYNPGSSNYIAKY-QST------------APC---------VHGHKKAVSYVKFLSN-DELAS   69 (179)
Q Consensus        13 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~------------~~~---------~~~~~~~i~~~~~~~~-~~l~~   69 (179)
                      .++++...........++|+|..+.-++.. +.+            +++         +.+|.      .|+|+ .+|..
T Consensus        57 aGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYA  130 (366)
T COG3490          57 AGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYA  130 (366)
T ss_pred             CCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEe
Confidence            456666666666677788888766655555 111            111         22332      48899 44444


Q ss_pred             ecC-----CCcEEEEecCCC-cceeeecCCCCCeEEEEEeeCCCEEEEecc------------------CCcEEEEEcCC
Q 038439           70 AST-----DSTLRLWDVKEN-LPVRTFRGHMNEKNFVGLTVNSEYIACGSE------------------SNEVYVYHKEI  125 (179)
Q Consensus        70 ~~~-----d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------------d~~v~vwd~~~  125 (179)
                      .-.     -|.|-|||.+.+ +.+..+..|.-....+.|.+||+.++.+..                  .-.+.+.|..+
T Consensus       131 TEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~at  210 (366)
T COG3490         131 TENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAAT  210 (366)
T ss_pred             ecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccc
Confidence            322     257889998853 345566667666778999999999887643                  11233444445


Q ss_pred             CccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEE
Q 038439          126 SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTA  166 (179)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  166 (179)
                      ++.+....+...       . +...|..+...+||..++.+
T Consensus       211 G~liekh~Lp~~-------l-~~lSiRHld~g~dgtvwfgc  243 (366)
T COG3490         211 GNLIEKHTLPAS-------L-RQLSIRHLDIGRDGTVWFGC  243 (366)
T ss_pred             cchhhhccCchh-------h-hhcceeeeeeCCCCcEEEEE
Confidence            544444333211       0 14467778888877755443

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.12  E-value=0.042  Score=37.80  Aligned_cols=151  Identities=13%  Similarity=0.162  Sum_probs=85.1

Q ss_pred             CCceeEEEEcCCCCeEEEEeCCCcee--eecc-----------cCceeEEEEeeC-CeEEEecCCCcEEEEecCCCccee
Q 038439           23 KANICCVKYNPGSSNYIAKYQSTAPC--VHGH-----------KKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVR   88 (179)
Q Consensus        23 ~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~-----------~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~   88 (179)
                      ...+.++.|+|+.+.++++.+....+  +...           -.....|.|..+ .+.++--.+..+.++.+.....+.
T Consensus        85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~  164 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI  164 (316)
T ss_pred             cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence            45599999999999999998333322  1111           112234666666 444444457777777665432111


Q ss_pred             e-------e---cCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcc-ccccccCCCCCCCCcccCCcceEEEEEEc
Q 038439           89 T-------F---RGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKP-VTWHRFSSPDMDDTDEDAGSYFISAVCWK  157 (179)
Q Consensus        89 ~-------~---~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  157 (179)
                      .       +   ...+.....++|.|..+.|+.+-+...+.||....+.. +.......+.......   -..+.++.|+
T Consensus       165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f---~~DvSgl~~~  241 (316)
T COG3204         165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLF---VLDVSGLEFN  241 (316)
T ss_pred             eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceE---eeccccceec
Confidence            1       1   11145677899999988888888888888888774432 1111111111000000   2346777888


Q ss_pred             cC-CCeEEEEeCCCcEEEEe
Q 038439          158 SD-SPTMLTANSQGTIKVLV  176 (179)
Q Consensus       158 ~~-~~~l~~~~~dg~i~iwd  176 (179)
                      +. +..|+.+..++.+.-.|
T Consensus       242 ~~~~~LLVLS~ESr~l~Evd  261 (316)
T COG3204         242 AITNSLLVLSDESRRLLEVD  261 (316)
T ss_pred             CCCCcEEEEecCCceEEEEe
Confidence            64 44555555565555444

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.12  E-value=0.0055  Score=46.45  Aligned_cols=73  Identities=11%  Similarity=0.147  Sum_probs=55.5

Q ss_pred             cCceeEEEEeeC-CeEEEecCCCcEEEEecCCCccee-----ee-cCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCC
Q 038439           53 KKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVR-----TF-RGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEI  125 (179)
Q Consensus        53 ~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~-----~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~  125 (179)
                      .+.+.....+++ .+++.|+..|.|.++-+..+.+-.     .. +.|...|++++|++++..+++|...|+|..-.+.+
T Consensus        76 ~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   76 TGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            344555667777 777888889999999887643211     11 23577899999999999999999999998887776

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.06  E-value=0.044  Score=37.74  Aligned_cols=120  Identities=11%  Similarity=0.216  Sum_probs=82.7

Q ss_pred             cccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecC-CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcc
Q 038439           51 GHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRG-HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKP  128 (179)
Q Consensus        51 ~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~  128 (179)
                      +-+..+.++.|+|+ +.|++......--++=-.+|+.++++.- .-+....+.+.-+|++.++--.++.+.++.+.....
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~  162 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT  162 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence            34455999999999 8888888777777776677888877642 133445678888888888877889999888776533


Q ss_pred             ccc-----cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          129 VTW-----HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       129 ~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      ...     +.+...       .+.......++|.|....|+.+-...=+.||..
T Consensus       163 ~~~~~~~~i~L~~~-------~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~  209 (316)
T COG3204         163 VISAKVQKIPLGTT-------NKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEV  209 (316)
T ss_pred             EEeccceEEecccc-------CCCCcCceeeecCCCCceEEEEEccCCcEEEEE
Confidence            221     122111       111345778999998888888877766777654

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.06  E-value=0.039  Score=39.56  Aligned_cols=18  Identities=22%  Similarity=0.733  Sum_probs=13.3

Q ss_pred             cceEEEEEEccCCCeEEE
Q 038439          148 SYFISAVCWKSDSPTMLT  165 (179)
Q Consensus       148 ~~~i~~~~~~~~~~~l~~  165 (179)
                      ...+..+.|.++++.|+.
T Consensus       183 ~~yl~~v~W~~d~~~l~~  200 (353)
T PF00930_consen  183 DYYLTRVGWSPDGKRLWV  200 (353)
T ss_dssp             SEEEEEEEEEETTEEEEE
T ss_pred             ccCcccceecCCCcEEEE
Confidence            556888999999884433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.05  E-value=0.037  Score=40.33  Aligned_cols=110  Identities=10%  Similarity=0.090  Sum_probs=56.5

Q ss_pred             ccEEEEEcCCceeEEeecCC---CceeEEEEcC--CCCeEEEEe-----------------CCCcee-eec---------
Q 038439            4 GKVKVWCTRQEASVLNIDMK---ANICCVKYNP--GSSNYIAKY-----------------QSTAPC-VHG---------   51 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~---~~v~~~~~~~--~~~~~~~~~-----------------~~~~~~-~~~---------   51 (179)
                      .++.+||+.+.+.++++...   ..+..+.|..  +...-++.+                 ...+.+ +..         
T Consensus       222 ~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp  301 (461)
T PF05694_consen  222 HSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILP  301 (461)
T ss_dssp             -EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---
T ss_pred             CeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccc
Confidence            58999999999999999854   3477888854  343333332                 111111 111         


Q ss_pred             --------ccCceeEEEEeeC-CeEEEec-CCCcEEEEecCCC---cceeeecC----------------CCCCeEEEEE
Q 038439           52 --------HKKAVSYVKFLSN-DELASAS-TDSTLRLWDVKEN---LPVRTFRG----------------HMNEKNFVGL  102 (179)
Q Consensus        52 --------~~~~i~~~~~~~~-~~l~~~~-~d~~v~iwd~~~~---~~~~~~~~----------------~~~~v~~~~~  102 (179)
                              -..-|+.|..|.| ++|..++ .+|.||.||+...   +++.++..                -.+....+..
T Consensus       302 ~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvql  381 (461)
T PF05694_consen  302 EMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQL  381 (461)
T ss_dssp             GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE
T ss_pred             ccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEE
Confidence                    1245789999999 6665544 5899999999863   22222221                0123466888


Q ss_pred             eeCCCEEEEec
Q 038439          103 TVNSEYIACGS  113 (179)
Q Consensus       103 ~~~~~~~~~~~  113 (179)
                      |.||+.+++.+
T Consensus       382 S~DGkRlYvTn  392 (461)
T PF05694_consen  382 SLDGKRLYVTN  392 (461)
T ss_dssp             -TTSSEEEEE-
T ss_pred             ccCCeEEEEEe
Confidence            99999887653

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.01  E-value=0.048  Score=40.31  Aligned_cols=117  Identities=8%  Similarity=0.078  Sum_probs=62.4

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCCCc--------------------ee--eecccCceeEEE
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTA--------------------PC--VHGHKKAVSYVK   60 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--------------------~~--~~~~~~~i~~~~   60 (179)
                      ++.|.+||+++++.+..++... |..+.|++++..+..++...-                    .+  +..-...|.+..
T Consensus       125 ~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~  203 (443)
T PF04053_consen  125 SDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGC  203 (443)
T ss_dssp             TTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEE
T ss_pred             CCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEE
Confidence            4579999999999999998775 999999999976666651111                    12  222245677777


Q ss_pred             EeeCCeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCC
Q 038439           61 FLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEI  125 (179)
Q Consensus        61 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~  125 (179)
                      |..+ .++-.... .++-  +..|+ ...+..-..++.-+.+.|+...++....|+.+..+.+..
T Consensus       204 W~~d-~fiYtT~~-~lkY--l~~Ge-~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  204 WVED-CFIYTTSN-HLKY--LVNGE-TGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             EETT-EEEEE-TT-EEEE--EETTE-EEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             EEcC-EEEEEcCC-eEEE--EEcCC-cceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence            7766 33333333 5554  33343 223332345677778888777778788888888887653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.97  E-value=0.022  Score=37.98  Aligned_cols=99  Identities=9%  Similarity=0.072  Sum_probs=65.8

Q ss_pred             eEEEEeeC--CeEEEecCCCcEEEEe--cCCCc-----ceeeecC----CCCCeEEEEEeeCCCEEEEeccCCcEEEEEc
Q 038439           57 SYVKFLSN--DELASASTDSTLRLWD--VKENL-----PVRTFRG----HMNEKNFVGLTVNSEYIACGSESNEVYVYHK  123 (179)
Q Consensus        57 ~~~~~~~~--~~l~~~~~d~~v~iwd--~~~~~-----~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~  123 (179)
                      +.++|..+  .+.++-+.+-.|.-||  +.++.     .+..++.    .....-.++...+|.+++++-..++|...|+
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp  240 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP  240 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence            45788877  4556667777887777  55542     2222221    1112234555667888888888899999999


Q ss_pred             CCCccccccccCCCCCCCCcccCCcceEEEEEEc-cCCCeEEEEe
Q 038439          124 EISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWK-SDSPTMLTAN  167 (179)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~  167 (179)
                      .+++.+..+.+.            ...+++++|- ++-..+++.+
T Consensus       241 ~tGK~L~eiklP------------t~qitsccFgGkn~d~~yvT~  273 (310)
T KOG4499|consen  241 TTGKILLEIKLP------------TPQITSCCFGGKNLDILYVTT  273 (310)
T ss_pred             CCCcEEEEEEcC------------CCceEEEEecCCCccEEEEEe
Confidence            999999888775            5579999996 3444555443

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.95  E-value=0.013  Score=44.73  Aligned_cols=78  Identities=19%  Similarity=0.292  Sum_probs=56.0

Q ss_pred             CccEEEEEcCCceeEEee--cCCCceeEEEEc--CCCCeEEEEe-------------------CCCcee----eeccc-C
Q 038439            3 YGKVKVWCTRQEASVLNI--DMKANICCVKYN--PGSSNYIAKY-------------------QSTAPC----VHGHK-K   54 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~--~~~~~v~~~~~~--~~~~~~~~~~-------------------~~~~~~----~~~~~-~   54 (179)
                      -.++.|||...+.....-  ...+.|.++.|.  |+++.++++|                   ..-.++    +..|+ .
T Consensus        50 ~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h  129 (631)
T PF12234_consen   50 RSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPH  129 (631)
T ss_pred             CCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCC
Confidence            457999999988755443  458899999994  7888999999                   111122    55565 6


Q ss_pred             ceeEEEEeeCCeEEEecCCCcEEEEec
Q 038439           55 AVSYVKFLSNDELASASTDSTLRLWDV   81 (179)
Q Consensus        55 ~i~~~~~~~~~~l~~~~~d~~v~iwd~   81 (179)
                      +|.+..|.+++.++.|+. ..+.|+|-
T Consensus       130 ~Igds~Wl~~G~LvV~sG-Nqlfv~dk  155 (631)
T PF12234_consen  130 PIGDSIWLKDGTLVVGSG-NQLFVFDK  155 (631)
T ss_pred             CccceeEecCCeEEEEeC-CEEEEECC
Confidence            899999999977777664 45677763

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.89  E-value=0.073  Score=36.65  Aligned_cols=129  Identities=13%  Similarity=0.028  Sum_probs=78.9

Q ss_pred             EEEEcCCCCeEEEEe-CCCcee-eecccCceeEEEEeeC--CeEEEecCCCc-EEEEecCCCcceeeecCCCCC--eEEE
Q 038439           28 CVKYNPGSSNYIAKY-QSTAPC-VHGHKKAVSYVKFLSN--DELASASTDST-LRLWDVKENLPVRTFRGHMNE--KNFV  100 (179)
Q Consensus        28 ~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~i~~~~~~~~--~~l~~~~~d~~-v~iwd~~~~~~~~~~~~~~~~--v~~~  100 (179)
                      +....++|+..++.- ..++.+ -..-...-..|.++|.  .-++.+-.-|+ ..++|....+....+......  .-.=
T Consensus        40 saf~~~dgs~g~a~~~eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG  119 (366)
T COG3490          40 SAFDARDGSFGAATLSEAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG  119 (366)
T ss_pred             eeeeccCCceeEEEEccCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc
Confidence            344456775444444 556665 2222333446788888  55666666554 668999887766665433222  1224


Q ss_pred             EEeeCCCEEEEecc-----CCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEe
Q 038439          101 GLTVNSEYIACGSE-----SNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN  167 (179)
Q Consensus       101 ~~~~~~~~~~~~~~-----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  167 (179)
                      .|+|||++|+..-.     .|.|=|||.+.+- ...-++..+          .-....+.|.+||+.++.+.
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~f-qrvgE~~t~----------GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGF-QRVGEFSTH----------GIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEeccccc-ceecccccC----------CcCcceeEEecCCcEEEEeC
Confidence            58999999887543     3779999988431 122222222          44567889999999988764

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.88  E-value=0.006  Score=28.99  Aligned_cols=31  Identities=6%  Similarity=0.125  Sum_probs=26.1

Q ss_pred             CCeEEEEEeeCC---CEEEEeccCCcEEEEEcCC
Q 038439           95 NEKNFVGLTVNS---EYIACGSESNEVYVYHKEI  125 (179)
Q Consensus        95 ~~v~~~~~~~~~---~~~~~~~~d~~v~vwd~~~  125 (179)
                      +.++++.|+|.+   .+|+..-..+.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            368899999853   5888888889999999995

It contains a characteristic DLL sequence motif.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.85  E-value=0.006  Score=28.99  Aligned_cols=29  Identities=10%  Similarity=0.204  Sum_probs=24.7

Q ss_pred             eEEEEEEccCC---CeEEEEeCCCcEEEEeec
Q 038439          150 FISAVCWKSDS---PTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       150 ~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~  178 (179)
                      .+.++.|+|+.   .+|+.+-.-|.+.|+|++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R   33 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR   33 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence            58899999844   588888889999999987

It contains a characteristic DLL sequence motif.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.83  E-value=0.0077  Score=39.66  Aligned_cols=103  Identities=7%  Similarity=0.013  Sum_probs=62.7

Q ss_pred             CeEEEecCCCcEEEEecCCCccee-eecCCCCCeEE-EEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCC
Q 038439           65 DELASASTDSTLRLWDVKENLPVR-TFRGHMNEKNF-VGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDT  142 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~~~v~~-~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~  142 (179)
                      ..++.|+.++.|.+|.....-... .+......+-+ +.--.++.+..+++.+|.|+.|+...++.+-....        
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~--------  142 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ--------  142 (238)
T ss_pred             ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeecc--------
Confidence            678999999999999876321111 11111222222 22223456788999999999999987766543221        


Q ss_pred             cccCCcceEEEEEEccCCCeEEEE--eCCCcEEEEeec
Q 038439          143 DEDAGSYFISAVCWKSDSPTMLTA--NSQGTIKVLVLA  178 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~iwd~~  178 (179)
                         |...+...+..+..++.++..  +.|..++.|++.
T Consensus       143 ---h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  143 ---HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             ---ccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence               101334444455566667766  778888888764

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.78  E-value=0.059  Score=41.41  Aligned_cols=95  Identities=17%  Similarity=0.190  Sum_probs=61.3

Q ss_pred             cCCCcEEEEecCCCcceeeec-CCCCCeEEEEEe--eCCCEEEEeccCCcEEEEEcCCC---------ccccccccCCCC
Q 038439           71 STDSTLRLWDVKENLPVRTFR-GHMNEKNFVGLT--VNSEYIACGSESNEVYVYHKEIS---------KPVTWHRFSSPD  138 (179)
Q Consensus        71 ~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~~~~~~~d~~v~vwd~~~~---------~~~~~~~~~~~~  138 (179)
                      +....+.|||.+.+.....-. .....|..++|.  |+++.+++.+..+.|.++-....         .++..+..... 
T Consensus        48 ~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~-  126 (631)
T PF12234_consen   48 SSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSH-  126 (631)
T ss_pred             CCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecC-
Confidence            344579999999876433221 346789999985  57888888888899998864321         11222222211 


Q ss_pred             CCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439          139 MDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       139 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  176 (179)
                              ...+|.+..|.++|..++.+  ++.+.|+|
T Consensus       127 --------T~h~Igds~Wl~~G~LvV~s--GNqlfv~d  154 (631)
T PF12234_consen  127 --------TPHPIGDSIWLKDGTLVVGS--GNQLFVFD  154 (631)
T ss_pred             --------CCCCccceeEecCCeEEEEe--CCEEEEEC
Confidence                    14578899999999766544  34577665

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.76  E-value=0.0054  Score=43.88  Aligned_cols=99  Identities=12%  Similarity=0.098  Sum_probs=57.2

Q ss_pred             CCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCC-----
Q 038439           73 DSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAG-----  147 (179)
Q Consensus        73 d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-----  147 (179)
                      .+.+.++|+.+++.. .+......+....|+|+|+.++... ++.|.++++.+++..+.- ..+..  ....+..     
T Consensus        22 ~~~y~i~d~~~~~~~-~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT-~dg~~--~i~nG~~dwvye   96 (353)
T PF00930_consen   22 KGDYYIYDIETGEIT-PLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLT-TDGEP--GIYNGVPDWVYE   96 (353)
T ss_dssp             EEEEEEEETTTTEEE-ESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESE-S--TT--TEEESB--HHHH
T ss_pred             ceeEEEEecCCCceE-ECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEec-cccce--eEEcCccceecc
Confidence            356889999986543 3333356678899999999988765 578999998877544322 22110  0000000     


Q ss_pred             ---cceEEEEEEccCCCeEEEEeCC-CcEEEEe
Q 038439          148 ---SYFISAVCWKSDSPTMLTANSQ-GTIKVLV  176 (179)
Q Consensus       148 ---~~~i~~~~~~~~~~~l~~~~~d-g~i~iwd  176 (179)
                         -..-..+-||||+++|+....| ..+..+.
T Consensus        97 EEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~  129 (353)
T PF00930_consen   97 EEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYP  129 (353)
T ss_dssp             HHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEE
T ss_pred             ccccccccceEECCCCCEEEEEEECCcCCceEE
Confidence               0112458899999999876553 3444443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.73  E-value=0.14  Score=37.62  Aligned_cols=41  Identities=15%  Similarity=0.170  Sum_probs=32.3

Q ss_pred             CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccccc
Q 038439           94 MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF  134 (179)
Q Consensus        94 ~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~  134 (179)
                      .+++..++.||+|+++|.-..+|.+.+....-.+....+..
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~  256 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT  256 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence            35789999999999999989999998887665555544443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.68  E-value=0.051  Score=39.83  Aligned_cols=113  Identities=16%  Similarity=0.175  Sum_probs=63.2

Q ss_pred             eeEEEEeeC-CeEEEe-cCCC----cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccC-----------CcE
Q 038439           56 VSYVKFLSN-DELASA-STDS----TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSES-----------NEV  118 (179)
Q Consensus        56 i~~~~~~~~-~~l~~~-~~d~----~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d-----------~~v  118 (179)
                      +..+.++|+ ++++.+ +..|    .++++|+.+++.+...-... ....+.|.++++.|+....+           ..|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            345778888 666543 3333    59999999997664321111 12349999998876554322           236


Q ss_pred             EEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCC----CcEEEEee
Q 038439          119 YVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQ----GTIKVLVL  177 (179)
Q Consensus       119 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd~  177 (179)
                      +.|.+.+.......-+....       . ......+..++++++|+.....    ..+.+.++
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~-------~-~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~  259 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPD-------E-PFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDL  259 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TT-------C-TTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEEC
T ss_pred             EEEECCCChHhCeeEEeecC-------C-CcEEEEEEecCcccEEEEEEEccccCCeEEEEec
Confidence            77777765433112222111       0 2226678889999988764442    23555554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.66  E-value=0.038  Score=43.28  Aligned_cols=60  Identities=18%  Similarity=0.277  Sum_probs=44.1

Q ss_pred             ceeEEEEcCCCCeEEEEe-----------C---C-----C-cee------------eecccCceeEEEEeeC----CeEE
Q 038439           25 NICCVKYNPGSSNYIAKY-----------Q---S-----T-APC------------VHGHKKAVSYVKFLSN----DELA   68 (179)
Q Consensus        25 ~v~~~~~~~~~~~~~~~~-----------~---~-----~-~~~------------~~~~~~~i~~~~~~~~----~~l~   68 (179)
                      .|..+.+||+|..++.+|           +   .     + ..+            ...+...|..+.|+|.    ..|+
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~  165 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV  165 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence            488999999998777777           1   0     1 111            1133457889999997    6788


Q ss_pred             EecCCCcEEEEecCCC
Q 038439           69 SASTDSTLRLWDVKEN   84 (179)
Q Consensus        69 ~~~~d~~v~iwd~~~~   84 (179)
                      .-..|+++|+||+...
T Consensus       166 vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  166 VLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEecCCEEEEEecCCC
Confidence            8899999999999763

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=96.57  E-value=0.097  Score=39.04  Aligned_cols=59  Identities=19%  Similarity=0.230  Sum_probs=47.1

Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcC
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKE  124 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~  124 (179)
                      ++++.+|..|-|++||.-..+....+.+-...|..+..+.+|.++++.+. .++.+-|++
T Consensus       574 GyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         574 GYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             ceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence            89999999999999997655555556666778899999999999876664 567777765

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.54  E-value=0.064  Score=31.38  Aligned_cols=65  Identities=15%  Similarity=0.182  Sum_probs=43.5

Q ss_pred             cCceeEEEEeeCCeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEee-C--C-CEEEEeccCCcEEE
Q 038439           53 KKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTV-N--S-EYIACGSESNEVYV  120 (179)
Q Consensus        53 ~~~i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~--~-~~~~~~~~d~~v~v  120 (179)
                      ...|+++.-...+.|+.+..+|+|-+|+-..  .+..++.... +.++.+.. +  | ..|++|-.+|.|-+
T Consensus        42 ~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~--RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   42 TDKVTSLCSLGGGRFAYALANGTVGVYDRSQ--RLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             ccceEEEEEcCCCEEEEEecCCEEEEEeCcc--eeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            3567777766668899999999999998643  3445554333 55555433 3  3 25888888887753

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.51  E-value=0.039  Score=44.63  Aligned_cols=100  Identities=16%  Similarity=0.147  Sum_probs=67.1

Q ss_pred             eeEEEEeeC--CeEEEecCCCcEEEEecCCCc-ceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccc
Q 038439           56 VSYVKFLSN--DELASASTDSTLRLWDVKENL-PVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWH  132 (179)
Q Consensus        56 i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~  132 (179)
                      ..++.|.|.  ...+.+..|+.|++..+.... .+..+. -....++++|+|.|..++.|-..|++.-|-..-. ....+
T Consensus       158 ~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~i  235 (1405)
T KOG3630|consen  158 QLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEI  235 (1405)
T ss_pred             cccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccc-eeecc
Confidence            457889988  567777889999988765422 223332 3556789999999999999999999887765432 21111


Q ss_pred             ccCCCCCCCCcccCCcceEEEEEEccCCCeEEE
Q 038439          133 RFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLT  165 (179)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  165 (179)
                      ..  +...     . ...|.+++|-....++++
T Consensus       236 p~--Pp~~-----e-~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  236 PE--PPVE-----E-NYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             cC--CCcC-----C-CcceeEEEEecceeEEEE
Confidence            11  1100     0 457999999877776654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.50  E-value=0.24  Score=37.38  Aligned_cols=105  Identities=7%  Similarity=-0.013  Sum_probs=61.2

Q ss_pred             eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEe------------------ccCCcEEEEEcCCCc
Q 038439           66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACG------------------SESNEVYVYHKEISK  127 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~------------------~~d~~v~vwd~~~~~  127 (179)
                      .++.++.+|.+...|.++++.+-......   ..++.+|  ..++.+                  ..+|.+...|+.+++
T Consensus       303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~  377 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK  377 (488)
T ss_pred             EEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence            47778889999999999998876654211   1123333  222222                  246788999999998


Q ss_pred             cccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          128 PVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      .+-.............    ......-.....+..|++++.||.++.+|.++
T Consensus       378 ~~W~~~~~~~~~~~~~----g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~t  425 (488)
T cd00216         378 VVWEKREGTIRDSWNI----GFPHWGGSLATAGNLVFAGAADGYFRAFDATT  425 (488)
T ss_pred             EeeEeeCCcccccccc----CCcccCcceEecCCeEEEECCCCeEEEEECCC
Confidence            7766554311000000    00110000112567788888999999988653

The alignment model contains an 8-bladed beta-propeller.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=96.50  E-value=0.053  Score=36.14  Aligned_cols=73  Identities=19%  Similarity=0.213  Sum_probs=48.0

Q ss_pred             EeeCCCEEEEeccCCcEEEEEcCCCcccccc-c---cCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          102 LTVNSEYIACGSESNEVYVYHKEISKPVTWH-R---FSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       102 ~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      +..++.++++-+.+|.+++||+.+++.+..- .   +-.... .... .....|..+..+.+|.-+++-+ +|..+.|+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~-~~~~-~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSP-VSDK-SSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccc-cccC-CCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence            4557889999999999999999987754332 1   100000 0000 1156788888998888766654 577888874

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.40  E-value=0.084  Score=37.10  Aligned_cols=100  Identities=9%  Similarity=0.099  Sum_probs=63.6

Q ss_pred             eeEEEEeeC-CeEEEe-cCCCcEEEEecCC--C----c-ceeeecCCCCCeEEEEEeeCCCEEEEeccCC-cEEEEEcCC
Q 038439           56 VSYVKFLSN-DELASA-STDSTLRLWDVKE--N----L-PVRTFRGHMNEKNFVGLTVNSEYIACGSESN-EVYVYHKEI  125 (179)
Q Consensus        56 i~~~~~~~~-~~l~~~-~~d~~v~iwd~~~--~----~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~-~v~vwd~~~  125 (179)
                      -+.|+|+|+ ..+..+ +..+.|.-|++..  +    + ....+....+..-.++...+|.+.+++..+| .|.+|+.. 
T Consensus       165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-  243 (307)
T COG3386         165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-  243 (307)
T ss_pred             cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-
Confidence            367999999 555544 4457788887752  1    1 1112222344555677888888876555554 89999998 


Q ss_pred             CccccccccCCCCCCCCcccCCcceEEEEEEc-cCCCeEEEEeC
Q 038439          126 SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWK-SDSPTMLTANS  168 (179)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~  168 (179)
                      ++++..+.+.            ...+++++|- |+.+.|+..+.
T Consensus       244 G~l~~~i~lP------------~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         244 GKLLGEIKLP------------VKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             CcEEEEEECC------------CCCCccceEeCCCcCEEEEEec
Confidence            8888777763            2457777774 45566655444

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.38  E-value=0.24  Score=36.21  Aligned_cols=76  Identities=13%  Similarity=0.162  Sum_probs=51.8

Q ss_pred             eecccCceeEEEEeeCCeEEEecCCCcEEEEecCCCcceee--ecC------CCCCeEEEEEee-----CC---CEEEEe
Q 038439           49 VHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRT--FRG------HMNEKNFVGLTV-----NS---EYIACG  112 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~--~~~------~~~~v~~~~~~~-----~~---~~~~~~  112 (179)
                      +....++|++++.+.-++++.|..+|.+.|.|+|....+..  +..      ....++++.|..     |+   -.+++|
T Consensus        82 ~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   82 LDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             E---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            55668899999986339999999999999999987665543  222      234577787763     22   357888


Q ss_pred             ccCCcEEEEEcC
Q 038439          113 SESNEVYVYHKE  124 (179)
Q Consensus       113 ~~d~~v~vwd~~  124 (179)
                      ...|.+.+|.+.
T Consensus       162 Tn~G~v~~fkIl  173 (395)
T PF08596_consen  162 TNSGNVLTFKIL  173 (395)
T ss_dssp             ETTSEEEEEEEE
T ss_pred             eCCCCEEEEEEe
Confidence            889999999765

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.36  E-value=0.049  Score=40.53  Aligned_cols=102  Identities=14%  Similarity=0.176  Sum_probs=63.3

Q ss_pred             EEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCE-------EEEeccCCcEEEEEcCCCccccccccCCCCC
Q 038439           67 LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEY-------IACGSESNEVYVYHKEISKPVTWHRFSSPDM  139 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~  139 (179)
                      |.++.....++-.|++.|+.+...+-+.. |.-+.+.|+.+.       -+.|-.+..|.-||+|-...-.......++.
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy  427 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY  427 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence            34455556788889999999988876555 677778776332       2456678889999998432210001111110


Q ss_pred             CCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439          140 DDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       140 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  176 (179)
                      .      ......|.+-..+ .++++|+.+|.|++||
T Consensus       428 ~------~k~nFsc~aTT~s-G~IvvgS~~GdIRLYd  457 (644)
T KOG2395|consen  428 S------TKNNFSCFATTES-GYIVVGSLKGDIRLYD  457 (644)
T ss_pred             c------cccccceeeecCC-ceEEEeecCCcEEeeh
Confidence            0      0233444444444 4699999999999998

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.28  E-value=0.23  Score=34.97  Aligned_cols=70  Identities=11%  Similarity=0.080  Sum_probs=43.0

Q ss_pred             ceeEEEEeeC-CeEEEecC-----C----CcEEEEecC-CCcceeeecCCCCCeEEEEEeeCCCEEEEecc-CCcEEEEE
Q 038439           55 AVSYVKFLSN-DELASAST-----D----STLRLWDVK-ENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE-SNEVYVYH  122 (179)
Q Consensus        55 ~i~~~~~~~~-~~l~~~~~-----d----~~v~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~~v~vwd  122 (179)
                      ..+.....|+ .+.++...     .    ..-.+|-+. .+..++.+..+-...+.++|+||++.++.... .+.|.-|+
T Consensus       112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~  191 (307)
T COG3386         112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD  191 (307)
T ss_pred             CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence            4456777788 44444333     0    112344444 45555555555556678999999987776654 57788887


Q ss_pred             cC
Q 038439          123 KE  124 (179)
Q Consensus       123 ~~  124 (179)
                      +.
T Consensus       192 ~d  193 (307)
T COG3386         192 LD  193 (307)
T ss_pred             cC
Confidence            76

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.28  E-value=0.29  Score=35.98  Aligned_cols=121  Identities=11%  Similarity=0.112  Sum_probs=58.9

Q ss_pred             eEEEEeeC-CeEEEecC--------------------CCcEEEEecCCCcceeeecCCCC--CeEEEEEeeC--CCE-EE
Q 038439           57 SYVKFLSN-DELASAST--------------------DSTLRLWDVKENLPVRTFRGHMN--EKNFVGLTVN--SEY-IA  110 (179)
Q Consensus        57 ~~~~~~~~-~~l~~~~~--------------------d~~v~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~--~~~-~~  110 (179)
                      ..+-|.|. +.++|+..                    ..++.+||+.+.+.++++.-...  ..-.+.|..+  ..+ ++
T Consensus       184 YDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFv  263 (461)
T PF05694_consen  184 YDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFV  263 (461)
T ss_dssp             --EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEE
T ss_pred             CCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEE
Confidence            45667777 77777542                    35799999999999998875432  3445666554  444 33


Q ss_pred             EeccCCcEEEEEc-CCCcc--ccccccCCCCCCCC--------cccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEeec
Q 038439          111 CGSESNEVYVYHK-EISKP--VTWHRFSSPDMDDT--------DEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVLA  178 (179)
Q Consensus       111 ~~~~d~~v~vwd~-~~~~~--~~~~~~~~~~~~~~--------~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~  178 (179)
                      .+-....|..|-. +.++-  ...........+..        +... ..-|+.+..|.|.++|+.++. .|.|+.||+.
T Consensus       264 g~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~-P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS  342 (461)
T PF05694_consen  264 GCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAV-PPLITDILISLDDRFLYVSNWLHGDVRQYDIS  342 (461)
T ss_dssp             EEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred             EEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccC-CCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence            3334555555544 32221  11111111100000        0000 245789999999999988776 8999999985

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.26  E-value=0.11  Score=38.93  Aligned_cols=82  Identities=16%  Similarity=0.115  Sum_probs=50.4

Q ss_pred             CeEEEEEeeCCCEEEEeccCCcEEEEEcC---------CCccccccccCCCCCCCCcccCCcceEEEEEEccCC---CeE
Q 038439           96 EKNFVGLTVNSEYIACGSESNEVYVYHKE---------ISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDS---PTM  163 (179)
Q Consensus        96 ~v~~~~~~~~~~~~~~~~~d~~v~vwd~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l  163 (179)
                      .|..+..++.|..++-.+.+|.+.++=.+         .+++....+...-.... +.....-.+..++|+|+.   ..|
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~-ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERF-FTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccccee-eccCCceeeeeccccCCccCCceE
Confidence            45667788899999888889976655322         23322222111111110 111113356788999965   678


Q ss_pred             EEEeCCCcEEEEeec
Q 038439          164 LTANSQGTIKVLVLA  178 (179)
Q Consensus       164 ~~~~~dg~i~iwd~~  178 (179)
                      ..-+.|+.|++||+.
T Consensus       184 ~iL~sdnviRiy~lS  198 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLS  198 (741)
T ss_pred             EEEecCcEEEEEecC
Confidence            888899999999975

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.22  E-value=0.039  Score=44.30  Aligned_cols=69  Identities=16%  Similarity=0.249  Sum_probs=53.6

Q ss_pred             cCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEE---EEEeeCCCEEEEeccCCcEEEEEc
Q 038439           53 KKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNF---VGLTVNSEYIACGSESNEVYVYHK  123 (179)
Q Consensus        53 ~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~---~~~~~~~~~~~~~~~d~~v~vwd~  123 (179)
                      ..+|++++|+.+ ..++.|-.+|.|.+||...++.++.+..+..+...   +.+..++..++++...|.  +|.+
T Consensus       130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            568999999999 78888888999999999998888888776655444   445556667888777775  5554

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.19  E-value=0.51  Score=38.07  Aligned_cols=159  Identities=14%  Similarity=0.101  Sum_probs=94.1

Q ss_pred             cEEEEEcCCceeEEeecC--C---CceeEEEEcCCCCeEEEEe-----------CCCcee-ee--c-------ccCceeE
Q 038439            5 KVKVWCTRQEASVLNIDM--K---ANICCVKYNPGSSNYIAKY-----------QSTAPC-VH--G-------HKKAVSY   58 (179)
Q Consensus         5 ~i~vwd~~~~~~~~~~~~--~---~~v~~~~~~~~~~~~~~~~-----------~~~~~~-~~--~-------~~~~i~~   58 (179)
                      .++++|-++.+.+...+.  .   ..|.++.|..|...++++|           ..++.+ +.  .       |+..+..
T Consensus       751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G  830 (1096)
T KOG1897|consen  751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG  830 (1096)
T ss_pred             EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence            577888777776655442  2   2366677998866787777           223333 21  1       1112222


Q ss_pred             EEEeeC--CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCc--ccccccc
Q 038439           59 VKFLSN--DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK--PVTWHRF  134 (179)
Q Consensus        59 ~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~--~~~~~~~  134 (179)
                      ..+.-.  +-.+.++-...|++|+..+.+.++.-..+...+..+...-.|..+++|..-+.+.+-..+..+  .....+.
T Consensus       831 av~aL~~fngkllA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD  910 (1096)
T KOG1897|consen  831 AVYALVEFNGKLLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARD  910 (1096)
T ss_pred             ceeehhhhCCeEEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehh
Confidence            222211  223344556789999999886666655667778888888899999999888877766555433  3222211


Q ss_pred             CCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEE
Q 038439          135 SSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVL  175 (179)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw  175 (179)
                                 .+....+++.+-. +..++.+..+|.+.+-
T Consensus       911 -----------~~p~Wmtaveil~-~d~ylgae~~gNlf~v  939 (1096)
T KOG1897|consen  911 -----------YNPNWMTAVEILD-DDTYLGAENSGNLFTV  939 (1096)
T ss_pred             -----------hCccceeeEEEec-CceEEeecccccEEEE
Confidence                       1145566666643 3445555556666554

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.02  E-value=0.28  Score=33.54  Aligned_cols=107  Identities=11%  Similarity=0.074  Sum_probs=66.8

Q ss_pred             eeEEEEeeC-CeEEEecCCC--cEEEEecCCCcceeeecCCC-CCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccc
Q 038439           56 VSYVKFLSN-DELASASTDS--TLRLWDVKENLPVRTFRGHM-NEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTW  131 (179)
Q Consensus        56 i~~~~~~~~-~~l~~~~~d~--~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~  131 (179)
                      ...+.|..+ .++-+.+.-|  .|+.+|+.+++......-.. -.-..+... +++.+.-.=.++...+||..+.+.+..
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~  125 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGT  125 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEE
Confidence            456777666 5555666555  79999999998766554322 122233333 333444456688999999999888877


Q ss_pred             cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      +...             ..=+.++  .++..|+.+.....++.+|.+
T Consensus       126 ~~y~-------------~EGWGLt--~dg~~Li~SDGS~~L~~~dP~  157 (264)
T PF05096_consen  126 FPYP-------------GEGWGLT--SDGKRLIMSDGSSRLYFLDPE  157 (264)
T ss_dssp             EE-S-------------SS--EEE--ECSSCEEEE-SSSEEEEE-TT
T ss_pred             EecC-------------CcceEEE--cCCCEEEEECCccceEEECCc
Confidence            7663             2335565  467778888778889888864

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.98  E-value=0.42  Score=35.21  Aligned_cols=29  Identities=10%  Similarity=0.063  Sum_probs=25.6

Q ss_pred             cceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439          148 SYFISAVCWKSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       148 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  176 (179)
                      .+++..++.||+++++|.-..+|.+.+..
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~s  244 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVS  244 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEE
Confidence            35799999999999999999999988765

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.96  E-value=0.29  Score=40.47  Aligned_cols=122  Identities=11%  Similarity=0.169  Sum_probs=73.1

Q ss_pred             CCccEEEEEcCCceeEEeec-CCCceeEEEE--------cCCCCeEEEEe--------------CC-Ccee------eec
Q 038439            2 AYGKVKVWCTRQEASVLNID-MKANICCVKY--------NPGSSNYIAKY--------------QS-TAPC------VHG   51 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~--------~~~~~~~~~~~--------------~~-~~~~------~~~   51 (179)
                      -|+.+.+|+++++.....++ ....|..+..        .|.=+++++.+              .+ +..+      +..
T Consensus        97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~  176 (1311)
T KOG1900|consen   97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV  176 (1311)
T ss_pred             eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence            58999999999866555554 2333443332        22223444444              11 1111      222


Q ss_pred             ccCceeEEEEeeCCeEEEecCCCcEEEEec----CCC---c-----------------ceeeec-CCCCCeEEEEEeeCC
Q 038439           52 HKKAVSYVKFLSNDELASASTDSTLRLWDV----KEN---L-----------------PVRTFR-GHMNEKNFVGLTVNS  106 (179)
Q Consensus        52 ~~~~i~~~~~~~~~~l~~~~~d~~v~iwd~----~~~---~-----------------~~~~~~-~~~~~v~~~~~~~~~  106 (179)
                      ..-.|+|+....++.++.++.||  .+|.+    ..+   +                 .+..+. .+..+|..+......
T Consensus       177 dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR  254 (1311)
T KOG1900|consen  177 DGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR  254 (1311)
T ss_pred             CCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence            24567888865556777777777  44443    221   0                 011222 345688888887777


Q ss_pred             CEEEEeccCCcEEEEEcCC
Q 038439          107 EYIACGSESNEVYVYHKEI  125 (179)
Q Consensus       107 ~~~~~~~~d~~v~vwd~~~  125 (179)
                      ..+++-++.+.|.+||+..
T Consensus       255 ~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  255 NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ceeeeeccCceEEEEEccC
Confidence            7889999999999999986

>PHA02713 hypothetical protein; Provisional

Probab=95.93  E-value=0.55  Score=36.12  Aligned_cols=63  Identities=6%  Similarity=0.009  Sum_probs=34.8

Q ss_pred             eCCCEEEEeccC------CcEEEEEcCC-CccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCC--cEEE
Q 038439          104 VNSEYIACGSES------NEVYVYHKEI-SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG--TIKV  174 (179)
Q Consensus       104 ~~~~~~~~~~~d------~~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i  174 (179)
                      -+++.++.|+.+      ..+..||+++ .+-........+          ......+.+  ++...++|+.+|  .+..
T Consensus       462 ~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~----------r~~~~~~~~--~~~iyv~Gg~~~~~~~e~  529 (557)
T PHA02713        462 HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR----------LSALHTILH--DNTIMMLHCYESYMLQDT  529 (557)
T ss_pred             ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc----------cccceeEEE--CCEEEEEeeecceeehhh
Confidence            357777777654      2467889887 443222111111          111222222  678888888887  6777


Q ss_pred             Eeec
Q 038439          175 LVLA  178 (179)
Q Consensus       175 wd~~  178 (179)
                      ||..
T Consensus       530 yd~~  533 (557)
T PHA02713        530 FNVY  533 (557)
T ss_pred             cCcc
Confidence            7754

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.85  E-value=0.39  Score=33.77  Aligned_cols=112  Identities=10%  Similarity=0.091  Sum_probs=55.8

Q ss_pred             eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEE-cCCC
Q 038439           49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYH-KEIS  126 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd-~~~~  126 (179)
                      ...-.+.+..+.-+++ .++++++.-....-||.-...-...-+.....+..|.|.|++...+.+ ..|.|+.=+ ....
T Consensus       140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~  218 (302)
T PF14870_consen  140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG  218 (302)
T ss_dssp             E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred             ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence            3344567788888888 666666665566678754322222222346789999999998876654 778888777 2222


Q ss_pred             ccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCC
Q 038439          127 KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQ  169 (179)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  169 (179)
                      +....-....        ......+..++|.+++...++|+..
T Consensus       219 ~~w~~~~~~~--------~~~~~~~ld~a~~~~~~~wa~gg~G  253 (302)
T PF14870_consen  219 ETWSEPIIPI--------KTNGYGILDLAYRPPNEIWAVGGSG  253 (302)
T ss_dssp             EEE---B-TT--------SS--S-EEEEEESSSS-EEEEESTT
T ss_pred             cccccccCCc--------ccCceeeEEEEecCCCCEEEEeCCc
Confidence            2211100000        0004458999999887766655543

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.73  E-value=0.036  Score=44.86  Aligned_cols=109  Identities=12%  Similarity=0.037  Sum_probs=69.6

Q ss_pred             ceeEEEEeeC---CeEEEecCCCcEEEEecCCCcc-----eeeecC------CCCCeEEEEEeeCC-CEEEEeccCCcEE
Q 038439           55 AVSYVKFLSN---DELASASTDSTLRLWDVKENLP-----VRTFRG------HMNEKNFVGLTVNS-EYIACGSESNEVY  119 (179)
Q Consensus        55 ~i~~~~~~~~---~~l~~~~~d~~v~iwd~~~~~~-----~~~~~~------~~~~v~~~~~~~~~-~~~~~~~~d~~v~  119 (179)
                      +|..+...+|   ..++..+.+..|..||+++...     ...+..      ......++.|+|.- ...++...|+.|.
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            4445555566   2344445566889999976321     111111      12334567888863 3466777888888


Q ss_pred             EEEcCCCcc-ccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439          120 VYHKEISKP-VTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       120 vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  176 (179)
                      +..+..... +..+.+             ....++++|+|.|+.++.|-..|++.-|.
T Consensus       182 V~~~~~~~~~v~s~p~-------------t~~~Tav~WSprGKQl~iG~nnGt~vQy~  226 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFPV-------------TNSQTAVLWSPRGKQLFIGRNNGTEVQYE  226 (1405)
T ss_pred             hhhhhhhhhhhcccCc-------------ccceeeEEeccccceeeEecCCCeEEEee
Confidence            877654322 222232             56789999999999999999999988774

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.73  E-value=0.22  Score=36.58  Aligned_cols=86  Identities=12%  Similarity=0.159  Sum_probs=58.2

Q ss_pred             eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCC-eEEEEEeeC-----------------CCE-
Q 038439           49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNE-KNFVGLTVN-----------------SEY-  108 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~-----------------~~~-  108 (179)
                      +.+....+.++..+|+ .+.++...-|.|.++|+..+..++.+++.... +.-+.....                 ..+ 
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L  382 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL  382 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence            4555667889999999 77777777789999999998888877765432 111111111                 112 


Q ss_pred             EEEeccCCcEEEEEcCCCcccccccc
Q 038439          109 IACGSESNEVYVYHKEISKPVTWHRF  134 (179)
Q Consensus       109 ~~~~~~d~~v~vwd~~~~~~~~~~~~  134 (179)
                      ++-.-..|.|.||.++++..+..+..
T Consensus       383 vIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  383 VIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             EEEeccCCeEEEEecCCCCEEEEEEe
Confidence            23455678899999998887766554

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.53  E-value=0.48  Score=32.58  Aligned_cols=63  Identities=17%  Similarity=0.313  Sum_probs=43.5

Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccc
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVT  130 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~  130 (179)
                      +.|+.|..+| +.+++.........+. +...|..+...|+-+.+++-+ |+.+.++++..-....
T Consensus         8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~   70 (275)
T PF00780_consen    8 DRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVS   70 (275)
T ss_pred             CEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccc
Confidence            6788888888 8999983332222222 233489999988877666554 5999999998755543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.23  E-value=0.96  Score=34.22  Aligned_cols=106  Identities=13%  Similarity=0.160  Sum_probs=58.5

Q ss_pred             CCCcEEEEecCCCcceeeecCCCC--------------------Ce-EEEEEeeCCCEEEEeccCC--------------
Q 038439           72 TDSTLRLWDVKENLPVRTFRGHMN--------------------EK-NFVGLTVNSEYIACGSESN--------------  116 (179)
Q Consensus        72 ~d~~v~iwd~~~~~~~~~~~~~~~--------------------~v-~~~~~~~~~~~~~~~~~d~--------------  116 (179)
                      .++.+.-+|..+++.+-.+.....                    .+ ...++.+.+..++.++.++              
T Consensus       173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~  252 (488)
T cd00216         173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN  252 (488)
T ss_pred             CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence            367888999999987766643211                    01 1234445566777776554              


Q ss_pred             ----cEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCC---eEEEEeCCCcEEEEeecC
Q 038439          117 ----EVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSP---TMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       117 ----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~  179 (179)
                          .|...|..+++.+-.+....+..... .......+..+. .-++.   .++.++.+|.+...|.++
T Consensus       253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~-~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~t  320 (488)
T cd00216         253 LYTDSIVALDADTGKVKWFYQTTPHDLWDY-DGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTT  320 (488)
T ss_pred             CceeeEEEEcCCCCCEEEEeeCCCCCCccc-ccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCC
Confidence                69999999999886655432211000 000000111111 01232   567777788887777653

The alignment model contains an 8-bladed beta-propeller.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.14  E-value=0.85  Score=33.07  Aligned_cols=57  Identities=16%  Similarity=0.097  Sum_probs=30.2

Q ss_pred             eeEEEEeeCCeEEEecCCCcEEEEecCC-C----cc--e-eeecC----CCCCeEEEEEeeCCCEEEEec
Q 038439           56 VSYVKFLSNDELASASTDSTLRLWDVKE-N----LP--V-RTFRG----HMNEKNFVGLTVNSEYIACGS  113 (179)
Q Consensus        56 i~~~~~~~~~~l~~~~~d~~v~iwd~~~-~----~~--~-~~~~~----~~~~v~~~~~~~~~~~~~~~~  113 (179)
                      ...+++.+++ ++.++.....++.|... +    +.  + ..+..    +......+.|.|||.++++-+
T Consensus        74 p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        74 VTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             ccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            3567776667 44555444334445432 1    11  1 12222    123467899999998766544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.11  E-value=0.47  Score=31.69  Aligned_cols=62  Identities=19%  Similarity=0.256  Sum_probs=46.1

Q ss_pred             CeEEEecCCCcEEEEecCCCcceeee-------c-------CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCc
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTF-------R-------GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK  127 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~  127 (179)
                      .++++.+.+|.+++||+.+.+.+..-       .       .....|..+.++.+|.-+++-+ +|..+.|+...+.
T Consensus        23 ~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~~   98 (219)
T PF07569_consen   23 SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLGC   98 (219)
T ss_pred             CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccce
Confidence            78899999999999999987644321       1       2345678888888888777654 5788899876543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.07  E-value=0.75  Score=33.89  Aligned_cols=39  Identities=13%  Similarity=0.077  Sum_probs=33.0

Q ss_pred             CCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccc
Q 038439           95 NEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHR  133 (179)
Q Consensus        95 ~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~  133 (179)
                      ..+.++..+|.+++.++...-|.|.++|+.++..+..++
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK  346 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK  346 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc
Confidence            457789999999998888888999999999988776655

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.06  E-value=1.2  Score=35.59  Aligned_cols=69  Identities=10%  Similarity=0.018  Sum_probs=49.1

Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCCCCC--------eEEEEEee----------------CCCEEEEeccCCcEEE
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGHMNE--------KNFVGLTV----------------NSEYIACGSESNEVYV  120 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~--------v~~~~~~~----------------~~~~~~~~~~d~~v~v  120 (179)
                      +.++.++.++.|.-.|..+++.+-.+......        .+.+++..                .+..++.++.|+.+.-
T Consensus       195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA  274 (764)
T TIGR03074       195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA  274 (764)
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence            67788888899999999999888776532211        12233321                2447888889999999


Q ss_pred             EEcCCCccccccc
Q 038439          121 YHKEISKPVTWHR  133 (179)
Q Consensus       121 wd~~~~~~~~~~~  133 (179)
                      .|.++++.+..+.
T Consensus       275 LDA~TGk~~W~fg  287 (764)
T TIGR03074       275 LDADTGKLCEDFG  287 (764)
T ss_pred             EECCCCCEEEEec
Confidence            9999999886543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=94.99  E-value=0.1  Score=24.39  Aligned_cols=31  Identities=16%  Similarity=0.085  Sum_probs=22.6

Q ss_pred             eCCCEEEEec-cCCcEEEEEcCCCcccccccc
Q 038439          104 VNSEYIACGS-ESNEVYVYHKEISKPVTWHRF  134 (179)
Q Consensus       104 ~~~~~~~~~~-~d~~v~vwd~~~~~~~~~~~~  134 (179)
                      |++++++++. .++.|.++|..+++.+.....
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            5677665544 578999999988877766554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=94.94  E-value=0.5  Score=30.27  Aligned_cols=30  Identities=13%  Similarity=0.246  Sum_probs=24.4

Q ss_pred             cceEEEEEEccCC------CeEEEEeCCCcEEEEee
Q 038439          148 SYFISAVCWKSDS------PTMLTANSQGTIKVLVL  177 (179)
Q Consensus       148 ~~~i~~~~~~~~~------~~l~~~~~dg~i~iwd~  177 (179)
                      ...+..++|||.|      -+|++.+.++.|.||.-
T Consensus        85 ~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~  120 (173)
T PF12657_consen   85 SSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGP  120 (173)
T ss_pred             cccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEec
Confidence            3478999999954      36888999999999963

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=94.91  E-value=1.8  Score=35.56  Aligned_cols=156  Identities=14%  Similarity=0.194  Sum_probs=86.7

Q ss_pred             cEEEEEcCCceeEEeecCCC-----ceeEEEEcCCCCe-EEEEe-----------------------CCCcee-eecccC
Q 038439            5 KVKVWCTRQEASVLNIDMKA-----NICCVKYNPGSSN-YIAKY-----------------------QSTAPC-VHGHKK   54 (179)
Q Consensus         5 ~i~vwd~~~~~~~~~~~~~~-----~v~~~~~~~~~~~-~~~~~-----------------------~~~~~~-~~~~~~   54 (179)
                      .|++.|..+++.+..++++.     .+.++.|+..... +++++                       +.++.+ +- |..
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lell-h~T  932 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELL-HKT  932 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeee-ecc
Confidence            58899998888777775432     3777888766544 55555                       112222 11 111


Q ss_pred             cee--EEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecC--CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCC--Cc
Q 038439           55 AVS--YVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRG--HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEI--SK  127 (179)
Q Consensus        55 ~i~--~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~--~~  127 (179)
                      .+.  -.+..|- +++++ +....+++||+-..++++..+.  -...|..+.+  .+..+++|.....|.++-.+.  .+
T Consensus       933 ~~~~~v~Ai~~f~~~~La-gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~ 1009 (1205)
T KOG1898|consen  933 EIPGPVGAICPFQGRVLA-GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQ 1009 (1205)
T ss_pred             CCCccceEEeccCCEEEE-ecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCe
Confidence            121  2344566 54444 4567899999988777665432  2334555554  466788887766666554443  33


Q ss_pred             cccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439          128 PVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  176 (179)
                      .+. +.-...          ...|+++.+ -|...++.+..=|.+.+-.
T Consensus      1010 l~~-fadD~~----------pR~Vt~~~~-lD~~tvagaDrfGNi~~vR 1046 (1205)
T KOG1898|consen 1010 LIV-FADDPV----------PRHVTALEL-LDYDTVAGADRFGNIAVVR 1046 (1205)
T ss_pred             EEE-EeCCCc----------cceeeEEEE-ecCCceeeccccCcEEEEE
Confidence            332 221111          334555544 3555677776666666543

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.79  E-value=1.6  Score=34.49  Aligned_cols=113  Identities=18%  Similarity=0.224  Sum_probs=71.8

Q ss_pred             ceeEEEEee--C-CeEEEecCCCcEEEEecCC-------C-------------cceeeecCCCCCeEEEEEe--eCCCEE
Q 038439           55 AVSYVKFLS--N-DELASASTDSTLRLWDVKE-------N-------------LPVRTFRGHMNEKNFVGLT--VNSEYI  109 (179)
Q Consensus        55 ~i~~~~~~~--~-~~l~~~~~d~~v~iwd~~~-------~-------------~~~~~~~~~~~~v~~~~~~--~~~~~~  109 (179)
                      .|+-|....  . ..|+.+..||.|.+|...+       .             ++-..+. ....++.++++  ...++|
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence            355554332  2 6788999999999996532       0             0111122 24467889998  778889


Q ss_pred             EEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCC---C---eEEEEeCCCcEEEEee
Q 038439          110 ACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDS---P---TMLTANSQGTIKVLVL  177 (179)
Q Consensus       110 ~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~---~l~~~~~dg~i~iwd~  177 (179)
                      |+++....|.||-....+..... ...+       . +...|.+++|-++.   .   +|++++-.|.+-+|++
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~-~~s~-------~-~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYH-VPSH-------Q-HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecCCceEEEEEEecccccccc-cccc-------c-cccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            98888888888766542111110 0010       0 15678889987643   2   7888999999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=94.61  E-value=0.96  Score=31.13  Aligned_cols=108  Identities=16%  Similarity=0.193  Sum_probs=62.8

Q ss_pred             CceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeee--------------cCCCCCeEEEE--EeeCCCEEEEeccCC
Q 038439           54 KAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTF--------------RGHMNEKNFVG--LTVNSEYIACGSESN  116 (179)
Q Consensus        54 ~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~--------------~~~~~~v~~~~--~~~~~~~~~~~~~d~  116 (179)
                      ..|..+...|+ +.++.-+ |+.+.++++..-......              ......+...+  -.+.+...+......
T Consensus        36 ~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk  114 (275)
T PF00780_consen   36 SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK  114 (275)
T ss_pred             ceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECC
Confidence            34889999998 7766665 499999998764332210              01122333333  112343444444456


Q ss_pred             cEEEEEcCCC-----ccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          117 EVYVYHKEIS-----KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       117 ~v~vwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .|.+|.....     +....+..             ...+..++|.  ++.++.|..++ ..+.|+.
T Consensus       115 ~i~i~~~~~~~~~f~~~~ke~~l-------------p~~~~~i~~~--~~~i~v~~~~~-f~~idl~  165 (275)
T PF00780_consen  115 KILIYEWNDPRNSFSKLLKEISL-------------PDPPSSIAFL--GNKICVGTSKG-FYLIDLN  165 (275)
T ss_pred             EEEEEEEECCcccccceeEEEEc-------------CCCcEEEEEe--CCEEEEEeCCc-eEEEecC
Confidence            8888887653     23333333             4567888887  56677776554 5566654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PRK10115 protease 2; Provisional

Probab=94.52  E-value=1.9  Score=34.20  Aligned_cols=70  Identities=9%  Similarity=-0.023  Sum_probs=43.9

Q ss_pred             ceeEEEEeeC-CeEEEecC-CC----cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccC------CcEEEEE
Q 038439           55 AVSYVKFLSN-DELASAST-DS----TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSES------NEVYVYH  122 (179)
Q Consensus        55 ~i~~~~~~~~-~~l~~~~~-d~----~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d------~~v~vwd  122 (179)
                      .+..+.++|+ ++|+.+.. +|    .+++.|+.+++.+...-...  -..++|.+|++.|+....+      ..|+.++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            4667889999 66655432 22    58888998776432221111  1469999998876554332      3577778


Q ss_pred             cCCC
Q 038439          123 KEIS  126 (179)
Q Consensus       123 ~~~~  126 (179)
                      +.++
T Consensus       206 lgt~  209 (686)
T PRK10115        206 IGTP  209 (686)
T ss_pred             CCCC
Confidence            8776

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.51  E-value=0.99  Score=30.89  Aligned_cols=144  Identities=11%  Similarity=0.036  Sum_probs=79.5

Q ss_pred             CceeEEEEcCCCCeEEEEe--CCCcee--e--------ecccCceeEEEEeeC-CeEEEecCCCcEEEEe-cCCCcce-e
Q 038439           24 ANICCVKYNPGSSNYIAKY--QSTAPC--V--------HGHKKAVSYVKFLSN-DELASASTDSTLRLWD-VKENLPV-R   88 (179)
Q Consensus        24 ~~v~~~~~~~~~~~~~~~~--~~~~~~--~--------~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd-~~~~~~~-~   88 (179)
                      ..+.+.+++++++.+.++.  .....+  .        ......+....|.++ ..++....+...+++. ...++.. .
T Consensus        24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~  103 (253)
T PF10647_consen   24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV  103 (253)
T ss_pred             ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence            3688999999997776665  233333  0        001235666778888 5555555566666663 2333221 2


Q ss_pred             eecCC--CCCeEEEEEeeCCCEEEEec---cCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeE
Q 038439           89 TFRGH--MNEKNFVGLTVNSEYIACGS---ESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTM  163 (179)
Q Consensus        89 ~~~~~--~~~v~~~~~~~~~~~~~~~~---~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  163 (179)
                      .+...  ...|..+.++|||..++.-.   .++.|.+=-+.....-....+..+..   ........+..+.|.+++.++
T Consensus       104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~---~~~~~~~~v~~v~W~~~~~L~  180 (253)
T PF10647_consen  104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRR---VAPPLLSDVTDVAWSDDSTLV  180 (253)
T ss_pred             EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceE---ecccccCcceeeeecCCCEEE
Confidence            22221  12799999999999876554   35667766544221110000000000   000004578999999998877


Q ss_pred             EEEeCCC
Q 038439          164 LTANSQG  170 (179)
Q Consensus       164 ~~~~~dg  170 (179)
                      +.+...+
T Consensus       181 V~~~~~~  187 (253)
T PF10647_consen  181 VLGRSAG  187 (253)
T ss_pred             EEeCCCC
Confidence            7766544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.44  E-value=1  Score=30.81  Aligned_cols=111  Identities=15%  Similarity=0.051  Sum_probs=63.5

Q ss_pred             ceeEEEEeeC-CeEEEec-CCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEE-cCCCccccc
Q 038439           55 AVSYVKFLSN-DELASAS-TDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYH-KEISKPVTW  131 (179)
Q Consensus        55 ~i~~~~~~~~-~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd-~~~~~~~~~  131 (179)
                      .+.+.+++++ +.++... .++.-.+|-...+....... ....+..-.|++++...+....+....++. ..+++... 
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~-  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP-  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee-
Confidence            6788899999 6555544 23333333333333333332 223567788999988777766666666664 33332211 


Q ss_pred             cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC---CCcEEEE
Q 038439          132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS---QGTIKVL  175 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iw  175 (179)
                      .......      .  ...|..+.++|||..++....   ++.|.+-
T Consensus       103 ~~v~~~~------~--~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va  141 (253)
T PF10647_consen  103 VEVDWPG------L--RGRITALRVSPDGTRVAVVVEDGGGGRVYVA  141 (253)
T ss_pred             EEecccc------c--CCceEEEEECCCCcEEEEEEecCCCCeEEEE
Confidence            1111110      0  227999999999998877662   4566553

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.18  E-value=1.2  Score=30.59  Aligned_cols=160  Identities=11%  Similarity=0.084  Sum_probs=80.7

Q ss_pred             ccEEEEEcCCceeEEeecCCCc--eeEEEEcCCCCeEEEEe-----------CCCcee-eecccCceeEEEEeeC-CeEE
Q 038439            4 GKVKVWCTRQEASVLNIDMKAN--ICCVKYNPGSSNYIAKY-----------QSTAPC-VHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      ..|+.+|+.+++.+........  -..++...+  .++...           .+.+.+ -....+.=+.++  .+ ..|+
T Consensus        68 S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li  143 (264)
T PF05096_consen   68 SSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLI  143 (264)
T ss_dssp             EEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEESSSSEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEE
T ss_pred             EEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEecCCeEEEEccccceEEEEEecCCcceEEE--cCCCEEE
Confidence            4788899999887666543222  122222222  222222           233333 111122334444  34 5666


Q ss_pred             EecCCCcEEEEecCCCcceeeecCC-----CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCC---CC
Q 038439           69 SASTDSTLRLWDVKENLPVRTFRGH-----MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPD---MD  140 (179)
Q Consensus        69 ~~~~d~~v~iwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~---~~  140 (179)
                      .+.....+..+|..+.+....+.-.     -..++.+.|- +|...|=.-....|...|..+|+....+.+..-.   ..
T Consensus       144 ~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~  222 (264)
T PF05096_consen  144 MSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGR  222 (264)
T ss_dssp             EE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTS
T ss_pred             EECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccc
Confidence            6666788999999887776665432     2245556664 6766665556677888899998865544321100   00


Q ss_pred             CCcccCCcceEEEEEEccCCCeEEEEeC
Q 038439          141 DTDEDAGSYFISAVCWKSDSPTMLTANS  168 (179)
Q Consensus       141 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~  168 (179)
                      .........-.+.+++.|..+.++..+.
T Consensus       223 ~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  223 DKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             TTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             cccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            0000001346789999997776666554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.16  E-value=1.4  Score=31.12  Aligned_cols=139  Identities=8%  Similarity=0.071  Sum_probs=68.6

Q ss_pred             CCceeEEEEcCCCCeEEEEeCCCcee-------------eecccCceeEEEEeeC-CeEEEecCCCcEEEEecC-CCcc-
Q 038439           23 KANICCVKYNPGSSNYIAKYQSTAPC-------------VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVK-ENLP-   86 (179)
Q Consensus        23 ~~~v~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~-~~~~-   86 (179)
                      .+.+..+.-+++| .+++++..+..+             -..-...|..|.|.|+ .+.+ ....+.++.=+.. ..+. 
T Consensus       144 ~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~~~~~w  221 (302)
T PF14870_consen  144 SGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDPDDGETW  221 (302)
T ss_dssp             ---EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-TTEEEEE
T ss_pred             cceeEeEEECCCC-cEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEE-EeCCcEEEEccCCCCcccc
Confidence            4568888889999 566666333222             2223578999999999 5545 4478888877622 1111 


Q ss_pred             ---eeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeE
Q 038439           87 ---VRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTM  163 (179)
Q Consensus        87 ---~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  163 (179)
                         +..++...-.+..++|.++++..++|+. |.+ +.....++--+..+.....         ...++.+.|.++.+-+
T Consensus       222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~---------~~n~~~i~f~~~~~gf  290 (302)
T PF14870_consen  222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENV---------PSNLYRIVFVNPDKGF  290 (302)
T ss_dssp             ---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTS---------SS---EEEEEETTEEE
T ss_pred             ccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCC---------CCceEEEEEcCCCceE
Confidence               1111122334778899988887777664 433 3444555543332211110         4457888887654444


Q ss_pred             EEEeCCCcEEEE
Q 038439          164 LTANSQGTIKVL  175 (179)
Q Consensus       164 ~~~~~dg~i~iw  175 (179)
                       +.+.+|.|--|
T Consensus       291 -~lG~~G~ll~~  301 (302)
T PF14870_consen  291 -VLGQDGVLLRY  301 (302)
T ss_dssp             -EE-STTEEEEE
T ss_pred             -EECCCcEEEEe
Confidence             44557766544

>PHA03098 kelch-like protein; Provisional

Probab=93.94  E-value=2.2  Score=32.65  Aligned_cols=102  Identities=12%  Similarity=0.047  Sum_probs=48.0

Q ss_pred             CeEEEecCC------CcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccC--------CcEEEEEcCCCcccc
Q 038439           65 DELASASTD------STLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSES--------NEVYVYHKEISKPVT  130 (179)
Q Consensus        65 ~~l~~~~~d------~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d--------~~v~vwd~~~~~~~~  130 (179)
                      ..++.|+.+      ..+..||+.+.+-...-..........+...++..++.|+.+        ..+.+||..+.+-..
T Consensus       391 ~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~  470 (534)
T PHA03098        391 LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTE  470 (534)
T ss_pred             EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceee
Confidence            445555532      357788887643221111011111111223356666777643        237888988765332


Q ss_pred             ccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCC-----CcEEEEeec
Q 038439          131 WHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQ-----GTIKVLVLA  178 (179)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~  178 (179)
                      .-....+          ......+.+  +++.++.|+.+     +.+.+||..
T Consensus       471 ~~~~~~~----------r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~  511 (534)
T PHA03098        471 LSSLNFP----------RINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDK  511 (534)
T ss_pred             CCCCCcc----------cccceEEEE--CCEEEEEcCCcCCcccceeEEEeCC
Confidence            2111100          111111222  66667777654     467888765

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=93.86  E-value=0.19  Score=33.36  Aligned_cols=61  Identities=13%  Similarity=0.126  Sum_probs=40.3

Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCCC-CCeEEEEEeeCCCEEEEe--ccCCcEEEEEcCC
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGHM-NEKNFVGLTVNSEYIACG--SESNEVYVYHKEI  125 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~--~~d~~v~vwd~~~  125 (179)
                      .+..+++.++.||.|++.-.+.+.....|. .+......+..+++++..  +.|..++.|++..
T Consensus       115 ~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  115 SLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            478889999999999998777665555555 344444444445555555  5666666666654

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=93.68  E-value=0.45  Score=36.44  Aligned_cols=69  Identities=7%  Similarity=0.053  Sum_probs=42.4

Q ss_pred             C-CeEEEecCCCcEEEEecCC----Ccceee-----------ec-----------CCCCCeEEEEEee----CCCEEEEe
Q 038439           64 N-DELASASTDSTLRLWDVKE----NLPVRT-----------FR-----------GHMNEKNFVGLTV----NSEYIACG  112 (179)
Q Consensus        64 ~-~~l~~~~~d~~v~iwd~~~----~~~~~~-----------~~-----------~~~~~v~~~~~~~----~~~~~~~~  112 (179)
                      + ..++.+..||.+.......    +.....           +.           ........+++.+    +..++++.
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            5 7778888888887777654    111110           10           0123345566665    67889999


Q ss_pred             ccCCcEEEEEcCCCcccccc
Q 038439          113 SESNEVYVYHKEISKPVTWH  132 (179)
Q Consensus       113 ~~d~~v~vwd~~~~~~~~~~  132 (179)
                      +.|+.+++||+.+++.+...
T Consensus       237 ~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  237 SRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             ETTSEEEEEETTTTCEEEEE
T ss_pred             eCCCeEEEEECCCCeEEEEe
Confidence            99999999999999885544

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.65  E-value=2.3  Score=32.61  Aligned_cols=68  Identities=12%  Similarity=0.083  Sum_probs=47.5

Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCCC-CCeE----------EEEEeeCCCEEEEeccCCcEEEEEcCCCccccccc
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGHM-NEKN----------FVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHR  133 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-~~v~----------~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~  133 (179)
                      +.++.++.++.|.-.|..+++.+-++.... ..+.          .+++  .+..++.++.++.+...|.++++.+-...
T Consensus        70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~  147 (527)
T TIGR03075        70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKK  147 (527)
T ss_pred             CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence            677777888899999999998887665321 1111          1122  23467778889999999999999876655


Q ss_pred             c
Q 038439          134 F  134 (179)
Q Consensus       134 ~  134 (179)
                      .
T Consensus       148 ~  148 (527)
T TIGR03075       148 N  148 (527)
T ss_pred             c
Confidence            4

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=93.39  E-value=2.1  Score=30.66  Aligned_cols=162  Identities=10%  Similarity=0.068  Sum_probs=80.3

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe--------------------CCCcee----eecc-cCc---
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY--------------------QSTAPC----VHGH-KKA---   55 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--------------------~~~~~~----~~~~-~~~---   55 (179)
                      +++.|+|..+++.+-.+...-.- .+..+|+++.++++.                    .+-.+.    +... ...   
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~~~-~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~   95 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGFLG-NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVP   95 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEESSE-EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS-
T ss_pred             ceEEEEECCCCcEEEEeecccCC-ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecc
Confidence            57889998888887777633222 256799998777665                    111111    2211 110   


Q ss_pred             -eeEEEEeeC-CeEEEe--cCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCC-Cccc
Q 038439           56 -VSYVKFLSN-DELASA--STDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEI-SKPV  129 (179)
Q Consensus        56 -i~~~~~~~~-~~l~~~--~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~-~~~~  129 (179)
                       -..+.++++ ++++..  +-...|.|-|+..++.+..+...  .  |...-|- .+-|.+-|.||.+.-..+.. |+..
T Consensus        96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--G--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~  171 (342)
T PF06433_consen   96 YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--G--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA  171 (342)
T ss_dssp             -GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--S--EEEEEEEETTEEEEEETTSCEEEEEETSTSSEE
T ss_pred             cccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--C--EEEEEecCCCceEEEecCCceEEEEECCCCCEe
Confidence             112233444 322222  22234555566655555555421  1  2222332 34577888899999998884 5543


Q ss_pred             cccc-cCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          130 TWHR-FSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       130 ~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .... .....        .......-.+...+..++..+.+|.|+--|+.
T Consensus       172 ~~~t~~F~~~--------~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dls  213 (342)
T PF06433_consen  172 QKSTKVFDPD--------DDPLFEHPAYSRDGGRLYFVSYEGNVYSADLS  213 (342)
T ss_dssp             EEEEEESSTT--------TS-B-S--EEETTTTEEEEEBTTSEEEEEEET
T ss_pred             EeeccccCCC--------CcccccccceECCCCeEEEEecCCEEEEEecc
Confidence            2211 11110        01122333445555566667778877776653

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.36  E-value=2.5  Score=31.55  Aligned_cols=73  Identities=15%  Similarity=0.179  Sum_probs=48.7

Q ss_pred             CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcE
Q 038439           93 HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTI  172 (179)
Q Consensus        93 ~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  172 (179)
                      ..++|.++.|++|.+.+|+--.+..|.+++....+..........        .....|...+|..+ .-+|..+..| +
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck--------~k~~~IlGF~W~~s-~e~A~i~~~G-~  134 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECK--------TKNANILGFCWTSS-TEIAFITDQG-I  134 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhc--------cCcceeEEEEEecC-eeEEEEecCC-e
Confidence            456899999999999999999999999999865444333222111        11445888889765 3355444443 4


Q ss_pred             EEE
Q 038439          173 KVL  175 (179)
Q Consensus       173 ~iw  175 (179)
                      .+|
T Consensus       135 e~y  137 (657)
T KOG2377|consen  135 EFY  137 (657)
T ss_pred             EEE
Confidence            444

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=93.29  E-value=1.7  Score=33.36  Aligned_cols=76  Identities=9%  Similarity=0.127  Sum_probs=39.4

Q ss_pred             eCCCEEEEeccCCcEEEEEcCC----CccccccccCCC--------CCCCC--cccCCcceEEEEEEcc----CCCeEEE
Q 038439          104 VNSEYIACGSESNEVYVYHKEI----SKPVTWHRFSSP--------DMDDT--DEDAGSYFISAVCWKS----DSPTMLT  165 (179)
Q Consensus       104 ~~~~~~~~~~~d~~v~vwd~~~----~~~~~~~~~~~~--------~~~~~--~~~~~~~~i~~~~~~~----~~~~l~~  165 (179)
                      ++...++.+..||.+....+..    +...........        .....  ...........++.++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3667788888899888887764    211111111110        00000  0000133455556655    7789999


Q ss_pred             EeCCCcEEEEeecC
Q 038439          166 ANSQGTIKVLVLAA  179 (179)
Q Consensus       166 ~~~dg~i~iwd~~~  179 (179)
                      .+.|+++++||+.+
T Consensus       236 l~~D~~LRiW~l~t  249 (547)
T PF11715_consen  236 LSRDHTLRIWSLET  249 (547)
T ss_dssp             EETTSEEEEEETTT
T ss_pred             EeCCCeEEEEECCC
Confidence            99999999999864

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.16  E-value=2.3  Score=30.45  Aligned_cols=49  Identities=14%  Similarity=0.132  Sum_probs=30.3

Q ss_pred             eeEEEEeeCCeEEEecCCCcEEEEecCCCcc---eeee----cCCCCCeEEEEEeeC
Q 038439           56 VSYVKFLSNDELASASTDSTLRLWDVKENLP---VRTF----RGHMNEKNFVGLTVN  105 (179)
Q Consensus        56 i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~---~~~~----~~~~~~v~~~~~~~~  105 (179)
                      -+.|+|.|++.++.+...|.|++++ ..+..   +..+    .........++++|+
T Consensus         4 P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             EEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred             ceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence            4678999994445556689999998 33332   2222    123446788999995

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=92.78  E-value=0.89  Score=25.63  Aligned_cols=42  Identities=19%  Similarity=0.278  Sum_probs=26.1

Q ss_pred             eccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEE
Q 038439          112 GSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTA  166 (179)
Q Consensus       112 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  166 (179)
                      +..+|.+.-||+.+++......-             -...+.++.++|+..++.+
T Consensus        33 ~~~~GRll~ydp~t~~~~vl~~~-------------L~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   33 GRPTGRLLRYDPSTKETTVLLDG-------------LYFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             T---EEEEEEETTTTEEEEEEEE-------------ESSEEEEEE-TTSSEEEEE
T ss_pred             CCCCcCEEEEECCCCeEEEehhC-------------CCccCeEEEcCCCCEEEEE
Confidence            34467788899988765333221             3357889999999966554

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=92.63  E-value=4.6  Score=32.61  Aligned_cols=95  Identities=14%  Similarity=0.111  Sum_probs=59.6

Q ss_pred             CceeEEEEeeC--CeEEEecCCCcEEEEecCCCc-----ceeeecCCC----------CCeEEEEEeeCCCEEEEeccCC
Q 038439           54 KAVSYVKFLSN--DELASASTDSTLRLWDVKENL-----PVRTFRGHM----------NEKNFVGLTVNSEYIACGSESN  116 (179)
Q Consensus        54 ~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~-----~~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~d~  116 (179)
                      .+...++|+|.  ..||.....|.-.||++....     .+.......          ..-..+.|.++.+.+++++. .
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~  224 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-S  224 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-C
Confidence            35678999998  899999999999999992111     111111111          12236778888777777664 5


Q ss_pred             cEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccC
Q 038439          117 EVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD  159 (179)
Q Consensus       117 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  159 (179)
                      .+.++|+++......+.....          ...|..+.-+|.
T Consensus       225 ~l~~~d~~~~~~~~~l~~~~~----------~~~IlDv~~~~~  257 (765)
T PF10214_consen  225 KLMLIDFESNWQTEYLVTAKT----------WSWILDVKRSPD  257 (765)
T ss_pred             ceEEEECCCCCccchhccCCC----------hhheeeEEecCC
Confidence            678999987655331111111          456777777765

These proteins are found in fungi.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=92.37  E-value=3  Score=29.80  Aligned_cols=71  Identities=6%  Similarity=0.111  Sum_probs=43.5

Q ss_pred             eEEEEEeeCCCEEEEeccC------CcEEEEEcCCCccccccccCCCCCCCC---cccCCcceEEEEEEccCCCeEEEEe
Q 038439           97 KNFVGLTVNSEYIACGSES------NEVYVYHKEISKPVTWHRFSSPDMDDT---DEDAGSYFISAVCWKSDSPTMLTAN  167 (179)
Q Consensus        97 v~~~~~~~~~~~~~~~~~d------~~v~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~  167 (179)
                      ..++++.++|.++++.-.+      ..|.-++.. ++....+..........   ...........++++|+|+.|+++.
T Consensus        87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~  165 (326)
T PF13449_consen   87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM  165 (326)
T ss_pred             hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence            4467777788888776666      778888876 65544443221110000   1111256789999999999776655


Q ss_pred             C
Q 038439          168 S  168 (179)
Q Consensus       168 ~  168 (179)
                      .
T Consensus       166 E  166 (326)
T PF13449_consen  166 E  166 (326)
T ss_pred             C
Confidence            4

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=92.34  E-value=0.57  Score=21.45  Aligned_cols=30  Identities=13%  Similarity=0.230  Sum_probs=18.6

Q ss_pred             CCCCCeEEEEEeeCCCEEEEec-cC--CcEEEE
Q 038439           92 GHMNEKNFVGLTVNSEYIACGS-ES--NEVYVY  121 (179)
Q Consensus        92 ~~~~~v~~~~~~~~~~~~~~~~-~d--~~v~vw  121 (179)
                      ..........|+|||+.|+-.+ .+  |.-.||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3445567889999999876544 34  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=92.32  E-value=5.1  Score=32.38  Aligned_cols=30  Identities=13%  Similarity=0.277  Sum_probs=26.3

Q ss_pred             cceEEEEEEcc-CCCeEEEEeCCCcEEEEee
Q 038439          148 SYFISAVCWKS-DSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       148 ~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~  177 (179)
                      +.+...++|+| +.+.||.....|...||++
T Consensus       145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i  175 (765)
T PF10214_consen  145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDI  175 (765)
T ss_pred             CCccceEEeccCccceEEEEeccCcEEEEEe
Confidence            55778899998 5568999999999999998

These proteins are found in fungi.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=91.97  E-value=2.5  Score=28.10  Aligned_cols=102  Identities=14%  Similarity=0.157  Sum_probs=53.7

Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecC--CC---CCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCC
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRG--HM---NEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDM  139 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~  139 (179)
                      ..|+.++...+++.-|..+.....++.-  ..   ..++.+.| -+|..++=.-.+..|...|..+|+.+..+....-..
T Consensus       141 ~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~  219 (262)
T COG3823         141 KNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLK  219 (262)
T ss_pred             cceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCch
Confidence            3455555566777777665443333221  11   12223333 246555544445566667777777766555433322


Q ss_pred             CCCcccCCcceEEEEEEccCCCeEEEEe
Q 038439          140 DDTDEDAGSYFISAVCWKSDSPTMLTAN  167 (179)
Q Consensus       140 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~  167 (179)
                      .......+..-.+.+++.|++..++..+
T Consensus       220 ~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         220 ELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             hcCccccccccccceeecCcCCeEEEec
Confidence            2222222245678899999885554444

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=91.73  E-value=3.1  Score=31.13  Aligned_cols=100  Identities=18%  Similarity=0.234  Sum_probs=58.7

Q ss_pred             eEEEecCCCcEEEE-ecCCCc-----ceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCC
Q 038439           66 ELASASTDSTLRLW-DVKENL-----PVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDM  139 (179)
Q Consensus        66 ~l~~~~~d~~v~iw-d~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~  139 (179)
                      -++..+.||-|.-| |.+.+.     .++.++-...++..+.-..+.+-+++-...|.+.++.....+.+.....     
T Consensus       282 SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~-----  356 (733)
T COG4590         282 SLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA-----  356 (733)
T ss_pred             eEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh-----
Confidence            36677888888876 555421     1222222223333332222344577778888888877655554432222     


Q ss_pred             CCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          140 DDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       140 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                              -..+.-++++|.+.++++-. .|.++++.+++
T Consensus       357 --------~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~N  387 (733)
T COG4590         357 --------YQAPQLVAMSPNQAYLLSED-QGKIRLAQLEN  387 (733)
T ss_pred             --------hcCcceeeeCcccchheeec-CCceEEEEecC
Confidence                    22456688999999887654 45788887753

>PHA02713 hypothetical protein; Provisional

Probab=91.62  E-value=5.2  Score=31.00  Aligned_cols=49  Identities=6%  Similarity=0.076  Sum_probs=24.4

Q ss_pred             CeEEEecCCC-----cEEEEecCCCccee--eecCCCCCeEEEEEeeCCCEEEEeccC
Q 038439           65 DELASASTDS-----TLRLWDVKENLPVR--TFRGHMNEKNFVGLTVNSEYIACGSES  115 (179)
Q Consensus        65 ~~l~~~~~d~-----~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~d  115 (179)
                      ..++.|+.++     .+..||..+.+-..  .+.........+  .-+|..++.|+.+
T Consensus       353 ~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~  408 (557)
T PHA02713        353 TIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRT  408 (557)
T ss_pred             EEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCC
Confidence            4556666543     47788887653221  111111111112  2367777777765

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=91.59  E-value=0.075  Score=39.28  Aligned_cols=127  Identities=10%  Similarity=0.170  Sum_probs=79.5

Q ss_pred             ceeEEEEcCCCCeEEEEe---------CCCcee-eecccCceeEEEEeeC--CeEEEecCCCcEEEEecCCCcceeeec-
Q 038439           25 NICCVKYNPGSSNYIAKY---------QSTAPC-VHGHKKAVSYVKFLSN--DELASASTDSTLRLWDVKENLPVRTFR-   91 (179)
Q Consensus        25 ~v~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~-   91 (179)
                      ......|-|.+..+++++         +.++.+ -...++....++|..+  ..++.+-..+.+.+||+.+.. .+++. 
T Consensus        36 ~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey-tqqLE~  114 (615)
T KOG2247|consen   36 GPIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY-TQQLES  114 (615)
T ss_pred             ccceeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh-HHHHhc
Confidence            345667778776766555         223333 1122334456667666  445566678899999998643 22222 


Q ss_pred             CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEE
Q 038439           92 GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTML  164 (179)
Q Consensus        92 ~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  164 (179)
                      +....-.-+.|++-...++.+...|.+.+++..+.+.+...  ..          |...+.+++|.+.+..+.
T Consensus       115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~--Gk----------h~RRgtq~av~lEd~vil  175 (615)
T KOG2247|consen  115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM--GK----------HQRRGTQIAVTLEDYVIL  175 (615)
T ss_pred             cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhh--cc----------cccceeEEEecccceeee
Confidence            12222233778988888888988999999998887665432  11          166788999988665443

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=91.16  E-value=6  Score=30.81  Aligned_cols=70  Identities=17%  Similarity=0.158  Sum_probs=40.6

Q ss_pred             eEEEEeeCCeEEEecCC------CcEEEEecCCCccee--eecCCCCCeEEEEEeeCCCEEEEeccCCc-----EEEEEc
Q 038439           57 SYVKFLSNDELASASTD------STLRLWDVKENLPVR--TFRGHMNEKNFVGLTVNSEYIACGSESNE-----VYVYHK  123 (179)
Q Consensus        57 ~~~~~~~~~~l~~~~~d------~~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~d~~-----v~vwd~  123 (179)
                      .+++...+..+++|+.|      ..+..||.+..+-..  .+.........  -.-+|...++|+.||.     +..||.
T Consensus       326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v--~~l~g~iYavGG~dg~~~l~svE~YDp  403 (571)
T KOG4441|consen  326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGV--AVLDGKLYAVGGFDGEKSLNSVECYDP  403 (571)
T ss_pred             ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcccccee--EEECCEEEEEeccccccccccEEEecC
Confidence            34444444567788888      357788887765322  12111111111  1236888899998864     777887


Q ss_pred             CCCcc
Q 038439          124 EISKP  128 (179)
Q Consensus       124 ~~~~~  128 (179)
                      ++.+-
T Consensus       404 ~~~~W  408 (571)
T KOG4441|consen  404 VTNKW  408 (571)
T ss_pred             CCCcc
Confidence            76553

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.09  E-value=5.2  Score=30.02  Aligned_cols=102  Identities=14%  Similarity=0.108  Sum_probs=60.3

Q ss_pred             ccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCccee----eecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCC
Q 038439           52 HKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVR----TFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEIS  126 (179)
Q Consensus        52 ~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~  126 (179)
                      ..++|.++.|++| ..++.--.+..|.+++....+...    +.+.....|....|.... -+|.-...| +.+|.....
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~-e~A~i~~~G-~e~y~v~pe  142 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST-EIAFITDQG-IEFYQVLPE  142 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe-eEEEEecCC-eEEEEEchh
Confidence            4569999999999 888888899999999985433222    223334457777887653 344433333 556655432


Q ss_pred             cc-ccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEe
Q 038439          127 KP-VTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN  167 (179)
Q Consensus       127 ~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  167 (179)
                      +. +...+  .+          ...|.-..|+++-+.++.++
T Consensus       143 krslRlVk--s~----------~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  143 KRSLRLVK--SH----------NLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             hhhhhhhh--hc----------ccCccEEEEccccceEeeec
Confidence            21 11111  11          44566677777666544433

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.07  E-value=0.29  Score=39.18  Aligned_cols=125  Identities=14%  Similarity=0.132  Sum_probs=66.8

Q ss_pred             eecccCceeEEEEeeC--CeEEEecCCCcEEEEecC--CCcceeee-----cCCCCCeEEEEEee---CCCEEEEeccCC
Q 038439           49 VHGHKKAVSYVKFLSN--DELASASTDSTLRLWDVK--ENLPVRTF-----RGHMNEKNFVGLTV---NSEYIACGSESN  116 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~--~~~~~~~~-----~~~~~~v~~~~~~~---~~~~~~~~~~d~  116 (179)
                      +++..+.+-.+.|...  ..+.  -.-|.+.|||+.  .|+....+     ......+.-+.|+|   +..++..+-.++
T Consensus       128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~  205 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG  205 (1283)
T ss_pred             HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence            4556666777776543  2222  334567788865  34332222     22234456677776   455666677778


Q ss_pred             cEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          117 EVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       117 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      .+++....+.................+..  .+.+.--..+|||..++..+.||.++.|.+
T Consensus       206 ~i~lL~~~ra~~~l~rsHs~~~~d~a~~~--~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  206 EIRLLNINRALRSLFRSHSQRVTDMAFFA--EGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             ceeEeeechHHHHHHHhcCCCcccHHHHh--hchhhheeeCCCCcEEEEeecCCccceeee
Confidence            88876665433211110100000000000  111111237899999999999999998864

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=90.91  E-value=1.4  Score=24.79  Aligned_cols=39  Identities=13%  Similarity=0.087  Sum_probs=18.2

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEE
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAK   41 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   41 (179)
                      +|.+.-||..+++....+..=.-.+.++++|+++.++++
T Consensus        36 ~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   36 TGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             -EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred             CcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEE
Confidence            345555555555443333333345556666666444443

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=90.79  E-value=1.2  Score=35.98  Aligned_cols=68  Identities=16%  Similarity=0.192  Sum_probs=43.7

Q ss_pred             eeEEEEeeC----CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEE-----------EEEeeCCCEEEEeccCCcEEE
Q 038439           56 VSYVKFLSN----DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNF-----------VGLTVNSEYIACGSESNEVYV  120 (179)
Q Consensus        56 i~~~~~~~~----~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~-----------~~~~~~~~~~~~~~~d~~v~v  120 (179)
                      +.-+.|.|-    .++..+-.++.+++........ ..+.+|...+..           -.++|||+.++..+.||.++.
T Consensus       183 ~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f  261 (1283)
T KOG1916|consen  183 PQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGF  261 (1283)
T ss_pred             cceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccce
Confidence            344555553    4555666778888876654321 233345433332           247899999999999999998


Q ss_pred             EEcC
Q 038439          121 YHKE  124 (179)
Q Consensus       121 wd~~  124 (179)
                      |.+.
T Consensus       262 ~Qiy  265 (1283)
T KOG1916|consen  262 YQIY  265 (1283)
T ss_pred             eeee
Confidence            8765

>smart00564 PQQ beta-propeller repeat

Probab=90.69  E-value=0.68  Score=20.15  Aligned_cols=23  Identities=13%  Similarity=0.235  Sum_probs=19.2

Q ss_pred             EEEEeccCCcEEEEEcCCCcccc
Q 038439          108 YIACGSESNEVYVYHKEISKPVT  130 (179)
Q Consensus       108 ~~~~~~~d~~v~vwd~~~~~~~~  130 (179)
                      .++.++.++.+..+|.++++.+.
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W   30 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILW   30 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEE
Confidence            57778889999999999887654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=90.35  E-value=7.2  Score=30.38  Aligned_cols=65  Identities=14%  Similarity=0.103  Sum_probs=36.2

Q ss_pred             CeEEEecCCC------cEEEEecCCCcce--eeecCCCCCeEEEEEeeCCCEEEEeccCCc-----EEEEEcCCCccccc
Q 038439           65 DELASASTDS------TLRLWDVKENLPV--RTFRGHMNEKNFVGLTVNSEYIACGSESNE-----VYVYHKEISKPVTW  131 (179)
Q Consensus        65 ~~l~~~~~d~------~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~-----v~vwd~~~~~~~~~  131 (179)
                      ...+.|+.++      .+..||..+.+..  ..+........ + -.-++..++.|+.|+.     |..||.++.+-...
T Consensus       429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v  506 (571)
T KOG4441|consen  429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-V-AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV  506 (571)
T ss_pred             EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-E-EEECCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence            4556666443      5677887765432  22221122222 2 2236777888887763     77889888765443

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=90.29  E-value=3.9  Score=27.24  Aligned_cols=49  Identities=16%  Similarity=0.241  Sum_probs=35.1

Q ss_pred             CeEEEecCCCcEEEEecCC--CcceeeecCCCCCeEEEEEeeCCCEEEEecc
Q 038439           65 DELASASTDSTLRLWDVKE--NLPVRTFRGHMNEKNFVGLTVNSEYIACGSE  114 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  114 (179)
                      ..|+.+.....|.+|++..  .+.+..|.. -+.|..+.++..|+|+++--.
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~   79 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEE   79 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEe
Confidence            3444445567799999883  345556653 477889999999999998643

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=90.08  E-value=5.9  Score=29.01  Aligned_cols=99  Identities=11%  Similarity=0.106  Sum_probs=46.6

Q ss_pred             cCceeEEEEeeC--CeEEEecC---CC-cEEEEecCC-CcceeeecCCC--CCeEEEEEeeCCCEEEEe-----ccCCcE
Q 038439           53 KKAVSYVKFLSN--DELASAST---DS-TLRLWDVKE-NLPVRTFRGHM--NEKNFVGLTVNSEYIACG-----SESNEV  118 (179)
Q Consensus        53 ~~~i~~~~~~~~--~~l~~~~~---d~-~v~iwd~~~-~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~-----~~d~~v  118 (179)
                      +..+.-+.|+|.  .+++.|-+   +. .-|||-+++ +.....+..+.  ..+..=-|.|||..|.--     +.+..|
T Consensus       187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i  266 (386)
T PF14583_consen  187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWI  266 (386)
T ss_dssp             SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEE
T ss_pred             CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEE
Confidence            344567888998  55555533   22 236776653 33344444332  234445689999876432     235567


Q ss_pred             EEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEE
Q 038439          119 YVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLT  165 (179)
Q Consensus       119 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  165 (179)
                      .-+|+.+++......              ......+--++||++++-
T Consensus       267 ~~~d~~t~~~~~~~~--------------~p~~~H~~ss~Dg~L~vG  299 (386)
T PF14583_consen  267 AGYDPDTGERRRLME--------------MPWCSHFMSSPDGKLFVG  299 (386)
T ss_dssp             EEE-TTT--EEEEEE--------------E-SEEEEEE-TTSSEEEE
T ss_pred             EeeCCCCCCceEEEe--------------CCceeeeEEcCCCCEEEe
Confidence            778888876543222              112344555678887654

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=90.04  E-value=3  Score=25.52  Aligned_cols=93  Identities=15%  Similarity=0.187  Sum_probs=56.0

Q ss_pred             EEeeC-CeEEEecCCCcEEEEecCCCc--------ceeeecCCCCCeEEEEEee-----CCCEEEEeccCCcEEEEEcCC
Q 038439           60 KFLSN-DELASASTDSTLRLWDVKENL--------PVRTFRGHMNEKNFVGLTV-----NSEYIACGSESNEVYVYHKEI  125 (179)
Q Consensus        60 ~~~~~-~~l~~~~~d~~v~iwd~~~~~--------~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~d~~v~vwd~~~  125 (179)
                      +|... ..|+.++.-+.|.|++.....        .+..+. -...|++++--+     +...|+.|+. ..+..||+..
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~   82 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVEN   82 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEccc
Confidence            44444 677778888888888865432        233333 345567765433     2445666664 5688999998


Q ss_pred             CccccccccCCCCCCCCcccCCcceEEEEEEcc----CCCeEEEEe
Q 038439          126 SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKS----DSPTMLTAN  167 (179)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~  167 (179)
                      ...+...+.             ...++++.+-.    +..++++|+
T Consensus        83 N~d~Fyke~-------------~DGvn~i~~g~~~~~~~~l~ivGG  115 (136)
T PF14781_consen   83 NSDLFYKEV-------------PDGVNAIVIGKLGDIPSPLVIVGG  115 (136)
T ss_pred             CchhhhhhC-------------ccceeEEEEEecCCCCCcEEEECc
Confidence            877765554             44566666532    334444444

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=90.01  E-value=2.8  Score=28.61  Aligned_cols=88  Identities=11%  Similarity=0.082  Sum_probs=45.9

Q ss_pred             EEEEecCCCcceeeecCC-CCCeEEEEEeeCCCEEEEecc-C--CcEEEEEcCCCccccccccCCCCCCCCcccCCcceE
Q 038439           76 LRLWDVKENLPVRTFRGH-MNEKNFVGLTVNSEYIACGSE-S--NEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFI  151 (179)
Q Consensus        76 v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~-d--~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  151 (179)
                      -.+||+.+.+. +.+... ......-.+-+||+++.+|+. +  ..+++++.........+......+.      ....-
T Consensus        48 s~~yD~~tn~~-rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~------~~RWY  120 (243)
T PF07250_consen   48 SVEYDPNTNTF-RPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ------SGRWY  120 (243)
T ss_pred             EEEEecCCCcE-EeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc------CCCcc
Confidence            45788887643 333321 222223357789999999876 2  3477777654111111110000000      02233


Q ss_pred             EEEEEccCCCeEEEEeCCC
Q 038439          152 SAVCWKSDSPTMLTANSQG  170 (179)
Q Consensus       152 ~~~~~~~~~~~l~~~~~dg  170 (179)
                      -...--|||+.|+.|+...
T Consensus       121 pT~~~L~DG~vlIvGG~~~  139 (243)
T PF07250_consen  121 PTATTLPDGRVLIVGGSNN  139 (243)
T ss_pred             ccceECCCCCEEEEeCcCC
Confidence            4455567999998888763

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF01011 PQQ: PQQ enzyme repeat family

Probab=89.79  E-value=1  Score=20.58  Aligned_cols=28  Identities=11%  Similarity=0.138  Sum_probs=22.5

Q ss_pred             EEEEeccCCcEEEEEcCCCccccccccC
Q 038439          108 YIACGSESNEVYVYHKEISKPVTWHRFS  135 (179)
Q Consensus       108 ~~~~~~~d~~v~vwd~~~~~~~~~~~~~  135 (179)
                      .++.++.+|.+...|.++|+.+-.+...
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~   29 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQTG   29 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence            3556688999999999999988776653

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PRK13684 Ycf48-like protein; Provisional

Probab=89.52  E-value=6.1  Score=28.37  Aligned_cols=109  Identities=7%  Similarity=0.117  Sum_probs=55.4

Q ss_pred             CceeEEEEeeCCeEEEecCCCcEEE-EecCCCcceeee-cCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccc
Q 038439           54 KAVSYVKFLSNDELASASTDSTLRL-WDVKENLPVRTF-RGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTW  131 (179)
Q Consensus        54 ~~i~~~~~~~~~~l~~~~~d~~v~i-wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~  131 (179)
                      ..+..+.+.|++.++..+..|.+.. +|- .++.-..+ ......++.+.+.++++.++++ ..|.+.+=....++.-..
T Consensus       173 g~~~~i~~~~~g~~v~~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~  250 (334)
T PRK13684        173 GVVRNLRRSPDGKYVAVSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSK  250 (334)
T ss_pred             ceEEEEEECCCCeEEEEeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcccc
Confidence            4567777777743444444554432 221 12212222 2234568889999998877765 457654322333333222


Q ss_pred             cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEE
Q 038439          132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIK  173 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  173 (179)
                      ......        .....+..+.+.+++..++++ .+|.+.
T Consensus       251 ~~~~~~--------~~~~~l~~v~~~~~~~~~~~G-~~G~v~  283 (334)
T PRK13684        251 PIIPEI--------TNGYGYLDLAYRTPGEIWAGG-GNGTLL  283 (334)
T ss_pred             ccCCcc--------ccccceeeEEEcCCCCEEEEc-CCCeEE
Confidence            111100        003457888888877755544 455443

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=89.06  E-value=7.4  Score=28.69  Aligned_cols=101  Identities=13%  Similarity=0.111  Sum_probs=54.8

Q ss_pred             eeEEEEcCCCCeEEEEe---------------CCCceeeec-ccCceeEEEEeeC-CeEEEecCCC-----------cEE
Q 038439           26 ICCVKYNPGSSNYIAKY---------------QSTAPCVHG-HKKAVSYVKFLSN-DELASASTDS-----------TLR   77 (179)
Q Consensus        26 v~~~~~~~~~~~~~~~~---------------~~~~~~~~~-~~~~i~~~~~~~~-~~l~~~~~d~-----------~v~   77 (179)
                      +...+++|+++.++.+-               .+++.+-.. .......+.|.++ ..|+....+.           .|+
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~  205 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY  205 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence            34678999996554442               233333111 0111223899999 5554443222           377


Q ss_pred             EEecCCCcce--eeecCCCCC--eEEEEEeeCCCEEEEecc---C-CcEEEEEcCCC
Q 038439           78 LWDVKENLPV--RTFRGHMNE--KNFVGLTVNSEYIACGSE---S-NEVYVYHKEIS  126 (179)
Q Consensus        78 iwd~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~~~~~~~---d-~~v~vwd~~~~  126 (179)
                      .|.+.+...-  ..+......  ...+..++++++++....   + ..+.+.|+..+
T Consensus       206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            7887765322  344433332  457888999999764322   3 45788888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=88.80  E-value=3.8  Score=25.07  Aligned_cols=64  Identities=11%  Similarity=0.232  Sum_probs=38.9

Q ss_pred             EEeeCCCEEEEeccCCcEEEEEcCCCcc--------ccccccCCCCCCCCcccCCcceEEEEE---Ecc--CCCeEEEEe
Q 038439          101 GLTVNSEYIACGSESNEVYVYHKEISKP--------VTWHRFSSPDMDDTDEDAGSYFISAVC---WKS--DSPTMLTAN  167 (179)
Q Consensus       101 ~~~~~~~~~~~~~~d~~v~vwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~--~~~~l~~~~  167 (179)
                      .|.....-|+.++..|+|.|++......        +..+.+             ...|++++   |.|  +...|+.|+
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-------------n~~italaaG~l~~~~~~D~LliGt   71 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-------------NQEITALAAGRLKPDDGRDCLLIGT   71 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC-------------CCceEEEEEEecCCCCCcCEEEEec
Confidence            3444444577788889999998875432        222332             34566665   432  345676666


Q ss_pred             CCCcEEEEeec
Q 038439          168 SQGTIKVLVLA  178 (179)
Q Consensus       168 ~dg~i~iwd~~  178 (179)
                      .. .+..||+.
T Consensus        72 ~t-~llaYDV~   81 (136)
T PF14781_consen   72 QT-SLLAYDVE   81 (136)
T ss_pred             cc-eEEEEEcc
Confidence            55 68888874

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=88.66  E-value=2.1  Score=34.14  Aligned_cols=40  Identities=0%  Similarity=-0.046  Sum_probs=30.3

Q ss_pred             CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccc
Q 038439           94 MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHR  133 (179)
Q Consensus        94 ~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~  133 (179)
                      ...+.++.-+|.|+-++.+..||.+.+|+...........
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~   53 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE   53 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh
Confidence            3456778888999999999999999999976554433333

>PHA03098 kelch-like protein; Provisional

Probab=88.29  E-value=9.9  Score=29.19  Aligned_cols=62  Identities=16%  Similarity=0.069  Sum_probs=31.7

Q ss_pred             CeEEEecCC-----CcEEEEecCCCccee--eecCCCCCeEEEEEeeCCCEEEEeccC------CcEEEEEcCCCcc
Q 038439           65 DELASASTD-----STLRLWDVKENLPVR--TFRGHMNEKNFVGLTVNSEYIACGSES------NEVYVYHKEISKP  128 (179)
Q Consensus        65 ~~l~~~~~d-----~~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~d------~~v~vwd~~~~~~  128 (179)
                      ..++.|+.+     ..+..||..+.+-..  .+....... ++ ...++..++.|+.+      ..+..||+.+.+-
T Consensus       344 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W  418 (534)
T PHA03098        344 RIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKW  418 (534)
T ss_pred             EEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eE-EEECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence            455566654     246678877653221  111111111 12 22356677777632      4578899877543

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=88.21  E-value=7  Score=27.37  Aligned_cols=54  Identities=15%  Similarity=0.149  Sum_probs=38.2

Q ss_pred             CcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEec------cCCcEEEEEcCCCc
Q 038439           74 STLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGS------ESNEVYVYHKEISK  127 (179)
Q Consensus        74 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~d~~v~vwd~~~~~  127 (179)
                      ..|++||....+-...-..-.+.|..+.|..+.+.++.|.      ....+..||..+..
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~   75 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT   75 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence            4699999887654444444567899999986666666663      35568889987654

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=87.41  E-value=6.6  Score=26.20  Aligned_cols=39  Identities=10%  Similarity=0.105  Sum_probs=29.7

Q ss_pred             CccEEEEEcC--CceeEEeecCCCceeEEEEcCCCCeEEEE
Q 038439            3 YGKVKVWCTR--QEASVLNIDMKANICCVKYNPGSSNYIAK   41 (179)
Q Consensus         3 d~~i~vwd~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   41 (179)
                      -+.|.+|++.  ..+.+..+..-+.|..+.++..|+++++.
T Consensus        37 g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTl   77 (215)
T PF14761_consen   37 GCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTL   77 (215)
T ss_pred             CCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEE
Confidence            3578899987  34566677777899999999999666555

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=87.23  E-value=1.3  Score=20.47  Aligned_cols=21  Identities=14%  Similarity=0.208  Sum_probs=16.4

Q ss_pred             CCCeEEEEeCCCcEEEEeecC
Q 038439          159 DSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       159 ~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      .+..++.++.||.++.+|.++
T Consensus        20 ~~g~vyv~~~dg~l~ald~~t   40 (40)
T PF13570_consen   20 AGGRVYVGTGDGNLYALDAAT   40 (40)
T ss_dssp             CTSEEEEE-TTSEEEEEETT-
T ss_pred             ECCEEEEEcCCCEEEEEeCCC
Confidence            466799999999999999864

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.22  E-value=12  Score=28.84  Aligned_cols=34  Identities=9%  Similarity=0.046  Sum_probs=26.4

Q ss_pred             CeEEEEEeeCC---CEEEEeccCCcEEEEEcCCCccc
Q 038439           96 EKNFVGLTVNS---EYIACGSESNEVYVYHKEISKPV  129 (179)
Q Consensus        96 ~v~~~~~~~~~---~~~~~~~~d~~v~vwd~~~~~~~  129 (179)
                      .+..++|+|+.   ..+..-..|+.+++||+.....+
T Consensus       167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             eeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence            45678899974   56777888999999998765544

>KOG2109 consensus WD40 repeat protein [General function prediction only]

Probab=86.59  E-value=0.47  Score=36.61  Aligned_cols=95  Identities=14%  Similarity=0.170  Sum_probs=56.5

Q ss_pred             EEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEE
Q 038439           76 LRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVC  155 (179)
Q Consensus        76 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  155 (179)
                      +.+=|+.+...+.+++.|..++..++|.+.+..+++++-.|. .|.+.+..+.+.......+...-....-....+-.++
T Consensus       297 vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~-nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdic  375 (788)
T KOG2109|consen  297 VIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGR-NVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDIC  375 (788)
T ss_pred             EEeecccchhhhhheeeecCcccccccccCceEEEEEeeccc-eeeeEEeccccccccccccccccchhcchHHHHHHHh
Confidence            445567777778889999999999999999999888877653 3444443333322222111100000000023344577


Q ss_pred             EccCCCeEEEEeCCCc
Q 038439          156 WKSDSPTMLTANSQGT  171 (179)
Q Consensus       156 ~~~~~~~l~~~~~dg~  171 (179)
                      |+...+++..++-+|.
T Consensus       376 fs~~s~~r~~gsc~Ge  391 (788)
T KOG2109|consen  376 FSEVSTIRTAGSCEGE  391 (788)
T ss_pred             hhhhcceEeecccCCC
Confidence            8777777777776653

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=86.51  E-value=9.7  Score=27.18  Aligned_cols=89  Identities=13%  Similarity=0.040  Sum_probs=57.9

Q ss_pred             EEeeCCeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccC--------------------CcEE
Q 038439           60 KFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSES--------------------NEVY  119 (179)
Q Consensus        60 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d--------------------~~v~  119 (179)
                      +|..+.+.++-+..+.+.-+|..+++...... -.+..+.++|.  |.++++|.+.                    .-|.
T Consensus       209 RWhdgrLwvldsgtGev~~vD~~~G~~e~Va~-vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~  285 (335)
T TIGR03032       209 RWYQGKLWLLNSGRGELGYVDPQAGKFQPVAF-LPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVA  285 (335)
T ss_pred             cEeCCeEEEEECCCCEEEEEcCCCCcEEEEEE-CCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccEE
Confidence            34433566777778888888877664333222 23456677776  7777665321                    2367


Q ss_pred             EEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCC
Q 038439          120 VYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSP  161 (179)
Q Consensus       120 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  161 (179)
                      +.|++++..+..+++...          -..+..++.-|.-+
T Consensus       286 vidl~tG~vv~~l~feg~----------v~EifdV~vLPg~r  317 (335)
T TIGR03032       286 VIDLNSGDVVHWLRFEGV----------IEEIYDVAVLPGVR  317 (335)
T ss_pred             EEECCCCCEEEEEEeCCc----------eeEEEEEEEecCCC
Confidence            889999988887777544          45678888877643

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=86.50  E-value=1.7  Score=18.37  Aligned_cols=25  Identities=16%  Similarity=0.236  Sum_probs=19.5

Q ss_pred             EEEEEEccCCCeEEEEeCCCcEEEE
Q 038439          151 ISAVCWKSDSPTMLTANSQGTIKVL  175 (179)
Q Consensus       151 i~~~~~~~~~~~l~~~~~dg~i~iw  175 (179)
                      ...++..++|+.+++=+....|.+|
T Consensus         4 P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    4 PHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcEEEEeCCCCEEEEECCCCEEEEC
Confidence            5678888888888887777777765

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=86.33  E-value=9.6  Score=26.97  Aligned_cols=109  Identities=12%  Similarity=0.052  Sum_probs=63.0

Q ss_pred             ceeEEEEeeCCeEEEecCCCcEEEEecCCCcceeeecC--CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccc-
Q 038439           55 AVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRG--HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTW-  131 (179)
Q Consensus        55 ~i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~-  131 (179)
                      .+..++++. ++...+..+.-++|.|+.+...-..+..  -.+-.++  |.-.|++.+++..|.-+.+.|+.+....+. 
T Consensus        88 l~~Dv~vse-~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdpssP~la  164 (370)
T COG5276          88 LFADVRVSE-EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSPQLA  164 (370)
T ss_pred             hhheeEecc-cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCCCCceee
Confidence            344555554 4556666777899999987543322211  1122333  344688888888666677899887543322 


Q ss_pred             cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      -+...+          ...-+.++.  +|++-+.+..|+-+.+-|+.
T Consensus       165 grya~~----------~~d~~~v~I--SGn~AYvA~~d~GL~ivDVS  199 (370)
T COG5276         165 GRYALP----------GGDTHDVAI--SGNYAYVAWRDGGLTIVDVS  199 (370)
T ss_pred             eeeccC----------CCCceeEEE--ecCeEEEEEeCCCeEEEEcc
Confidence            121111          222344555  36667777777778887764

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=85.87  E-value=17  Score=29.51  Aligned_cols=105  Identities=15%  Similarity=0.120  Sum_probs=57.6

Q ss_pred             CCcEEEEecCCCcceeeecCC---------CC--------Ce-EEEEEeeCCCEEEEec------------------cCC
Q 038439           73 DSTLRLWDVKENLPVRTFRGH---------MN--------EK-NFVGLTVNSEYIACGS------------------ESN  116 (179)
Q Consensus        73 d~~v~iwd~~~~~~~~~~~~~---------~~--------~v-~~~~~~~~~~~~~~~~------------------~d~  116 (179)
                      +|.|+-+|.++++.+-.+...         .+        .+ ..+++.++...++.+.                  ..+
T Consensus       335 ~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~  414 (764)
T TIGR03074       335 SGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSS  414 (764)
T ss_pred             CcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccc
Confidence            588999999999887665421         00        11 1234555444433321                  134


Q ss_pred             cEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCC---eEEEEeCCCcEEEEeecC
Q 038439          117 EVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSP---TMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       117 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~  179 (179)
                      .|.-.|.++++..-.++...++.-.-.... ...+..+. ..+|+   .++.++.+|.+.++|-++
T Consensus       415 slvALD~~TGk~~W~~Q~~~hD~WD~D~~~-~p~L~d~~-~~~G~~~~~v~~~~K~G~~~vlDr~t  478 (764)
T TIGR03074       415 SLVALDATTGKERWVFQTVHHDLWDMDVPA-QPSLVDLP-DADGTTVPALVAPTKQGQIYVLDRRT  478 (764)
T ss_pred             eEEEEeCCCCceEEEecccCCccccccccC-CceEEeee-cCCCcEeeEEEEECCCCEEEEEECCC
Confidence            567778888887766554333222111111 11122222 12553   788899999999998654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=85.36  E-value=13  Score=27.62  Aligned_cols=30  Identities=27%  Similarity=0.249  Sum_probs=24.9

Q ss_pred             ceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          149 YFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       149 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ..|.+++..+..+.+++.+.+|.|.+|++.
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~  219 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLG  219 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence            349999999988999999999999999985

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=85.01  E-value=15  Score=27.98  Aligned_cols=115  Identities=13%  Similarity=0.062  Sum_probs=52.7

Q ss_pred             EEEeeCCeEEEecCCCcEEEEecCCCcceeeecCCCCC---eEEEEEeeCCCEEEEecc-------------CCcEEEEE
Q 038439           59 VKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNE---KNFVGLTVNSEYIACGSE-------------SNEVYVYH  122 (179)
Q Consensus        59 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~-------------d~~v~vwd  122 (179)
                      +...+++.|+.++. ..++.+|+. |+.+..+......   -..+...|+|++|+.+..             ...|..+|
T Consensus       153 ~~~l~nG~ll~~~~-~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd  230 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG-NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD  230 (477)
T ss_dssp             EEE-TTS-EEEEEB-TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred             eeEcCCCCEEEecC-CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence            44556645555444 778888875 5555555433221   245667788988877661             12355666


Q ss_pred             cCCCccccccccCCCCCCCC---------------cccCCcceEEEEEEcc-CCCeEEEEeCCCcEEEEe
Q 038439          123 KEISKPVTWHRFSSPDMDDT---------------DEDAGSYFISAVCWKS-DSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd  176 (179)
                       .+|+.+..+.+..+.....               .....=..++++.+.+ ++.+++++-.-..|...|
T Consensus       231 -~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id  299 (477)
T PF05935_consen  231 -PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKID  299 (477)
T ss_dssp             -TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE
T ss_pred             -CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEE
Confidence             6676665554443321000               0010013488899988 444444444344565555

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PRK13684 Ycf48-like protein; Provisional

Probab=84.95  E-value=12  Score=26.90  Aligned_cols=139  Identities=9%  Similarity=0.023  Sum_probs=74.4

Q ss_pred             CceeEEEEcCCCCeEEEEeCCCcee-------------eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceee
Q 038439           24 ANICCVKYNPGSSNYIAKYQSTAPC-------------VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRT   89 (179)
Q Consensus        24 ~~v~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~   89 (179)
                      ..+..+.+.|++ .+++++..+..+             ...-...++++.+.++ ..++. +..|.+++=....++.-..
T Consensus       173 g~~~~i~~~~~g-~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~sW~~  250 (334)
T PRK13684        173 GVVRNLRRSPDG-KYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLESWSK  250 (334)
T ss_pred             ceEEEEEECCCC-eEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCcccc
Confidence            457889999987 566665222221             1122356788888888 55444 4567665322333332221


Q ss_pred             ecC----CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEE
Q 038439           90 FRG----HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLT  165 (179)
Q Consensus        90 ~~~----~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  165 (179)
                      ...    ....+..+.+.|+++.+++ +.+|.+. .....++.-.........         ....+.+.|..+++.+ .
T Consensus       251 ~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~---------~~~~~~~~~~~~~~~~-~  318 (334)
T PRK13684        251 PIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEV---------PSNFYKIVFLDPEKGF-V  318 (334)
T ss_pred             ccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCCCCCCeECCcCCCC---------CcceEEEEEeCCCceE-E
Confidence            111    1234677888888776555 4567554 333434433222110000         2357777777665554 4


Q ss_pred             EeCCCcEEEEe
Q 038439          166 ANSQGTIKVLV  176 (179)
Q Consensus       166 ~~~dg~i~iwd  176 (179)
                      .+..|.|--|+
T Consensus       319 ~G~~G~il~~~  329 (334)
T PRK13684        319 LGQRGVLLRYV  329 (334)
T ss_pred             ECCCceEEEec
Confidence            56677776654

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=84.89  E-value=7.4  Score=31.45  Aligned_cols=77  Identities=6%  Similarity=-0.062  Sum_probs=50.9

Q ss_pred             CCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccc----ccCCC-----CCCCCcccCCcceEEEEEEccCCCeEEE
Q 038439           95 NEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWH----RFSSP-----DMDDTDEDAGSYFISAVCWKSDSPTMLT  165 (179)
Q Consensus        95 ~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~----~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~  165 (179)
                      ..|.++....-+.+++....||.|.++|..+.+.+...    .....     .....+..  ...+..++|||++-.++.
T Consensus       260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~--~~~~~~vafSPt~c~~v~  337 (753)
T PF11635_consen  260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPC--IQPPLHVAFSPTMCSLVQ  337 (753)
T ss_pred             CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCcccccccccccccccc--CCCCceEEECcccceEEE
Confidence            34556666556778899999999999999988766544    11110     01111111  124556899999999999


Q ss_pred             EeCCCcEE
Q 038439          166 ANSQGTIK  173 (179)
Q Consensus       166 ~~~dg~i~  173 (179)
                      -..+|.+.
T Consensus       338 ~~~~~~~~  345 (753)
T PF11635_consen  338 IDEDGKTK  345 (753)
T ss_pred             EecCCCce
Confidence            88888855

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]

Probab=84.68  E-value=21  Score=29.49  Aligned_cols=71  Identities=7%  Similarity=0.025  Sum_probs=41.0

Q ss_pred             CceeEEEEeeC-CeEEEecCCCcEEEEecCCC--------c-------------cee---eecCCCCCeEEEEEeeCCCE
Q 038439           54 KAVSYVKFLSN-DELASASTDSTLRLWDVKEN--------L-------------PVR---TFRGHMNEKNFVGLTVNSEY  108 (179)
Q Consensus        54 ~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~--------~-------------~~~---~~~~~~~~v~~~~~~~~~~~  108 (179)
                      -.|.|+.-..+ +.+++|-.|  +.+|.+.-.        +             .+-   .+..+...|..++.......
T Consensus       182 inV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~vDqsRg~  259 (1263)
T COG5308         182 INVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAVDQSRGL  259 (1263)
T ss_pred             ceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheeecccccc
Confidence            35667766666 555555555  667765310        0             010   11124456667777666666


Q ss_pred             EEEeccCCcEEEEEcCCC
Q 038439          109 IACGSESNEVYVYHKEIS  126 (179)
Q Consensus       109 ~~~~~~d~~v~vwd~~~~  126 (179)
                      +.+-.....|+.|.+...
T Consensus       260 ly~Lr~kS~Vray~itkn  277 (1263)
T COG5308         260 LYVLRKKSAVRAYSITKN  277 (1263)
T ss_pred             eeeecccceeeeEeeecc
Confidence            777777778888876543

>PHA02790 Kelch-like protein; Provisional

Probab=84.63  E-value=16  Score=27.87  Aligned_cols=61  Identities=7%  Similarity=-0.122  Sum_probs=31.9

Q ss_pred             CeEEEecCCC-----cEEEEecCCCccee--eecCCCCCeEEEEEeeCCCEEEEeccC--CcEEEEEcCCCc
Q 038439           65 DELASASTDS-----TLRLWDVKENLPVR--TFRGHMNEKNFVGLTVNSEYIACGSES--NEVYVYHKEISK  127 (179)
Q Consensus        65 ~~l~~~~~d~-----~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~d--~~v~vwd~~~~~  127 (179)
                      ..++.|+.++     .+..||..+.+...  .+....... ++ ..-++..++.|+.+  ..+..||..+++
T Consensus       273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~-v~~~~~iYviGG~~~~~sve~ydp~~n~  342 (480)
T PHA02790        273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SG-VPANNKLYVVGGLPNPTSVERWFHGDAA  342 (480)
T ss_pred             EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eE-EEECCEEEEECCcCCCCceEEEECCCCe
Confidence            4456665432     46678877654222  121111111 12 23467777888764  357788876553

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=84.36  E-value=13  Score=26.66  Aligned_cols=106  Identities=12%  Similarity=0.158  Sum_probs=58.4

Q ss_pred             eEEEEeeC-CeEEEecCC------CcEEEEecCCCcceeeec---------------CCCCCeEEEEEeeCCCEEEEecc
Q 038439           57 SYVKFLSN-DELASASTD------STLRLWDVKENLPVRTFR---------------GHMNEKNFVGLTVNSEYIACGSE  114 (179)
Q Consensus        57 ~~~~~~~~-~~l~~~~~d------~~v~iwd~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~~~~~~  114 (179)
                      -+|++.++ .++++.-.+      ..|..++.. ++.+..+.               ........++++|+|+.|+++.+
T Consensus        88 Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E  166 (326)
T PF13449_consen   88 EGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME  166 (326)
T ss_pred             hHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence            36777555 555555556      678888866 54433331               12446788999999996665533


Q ss_pred             -----CC--c-------EEE--EEcCC-CccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEE
Q 038439          115 -----SN--E-------VYV--YHKEI-SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTA  166 (179)
Q Consensus       115 -----d~--~-------v~v--wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  166 (179)
                           |+  .       +++  ||..+ ++....+.+.........   ....+..+.+-+++++|+.-
T Consensus       167 ~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~---~~~~isd~~al~d~~lLvLE  232 (326)
T PF13449_consen  167 SPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAP---GDNGISDIAALPDGRLLVLE  232 (326)
T ss_pred             ccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCcccccc---CCCCceeEEEECCCcEEEEE
Confidence                 22  1       344  45444 323333222111000000   15678889999999877653

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=84.35  E-value=5.1  Score=28.30  Aligned_cols=36  Identities=14%  Similarity=0.196  Sum_probs=30.0

Q ss_pred             eEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccc
Q 038439           97 KNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWH  132 (179)
Q Consensus        97 v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~  132 (179)
                      ++++...++|.+|++.-.-..|.+.|.++++.+..+
T Consensus       146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~l  181 (299)
T PF14269_consen  146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRL  181 (299)
T ss_pred             eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEe
Confidence            567777888999999988899999999988876554

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=84.20  E-value=17  Score=28.06  Aligned_cols=104  Identities=14%  Similarity=0.025  Sum_probs=60.9

Q ss_pred             CCcEEEEecCCCcceeeecCCCC-------------------------------CeE-EEEEeeCCCEEEEeccC-----
Q 038439           73 DSTLRLWDVKENLPVRTFRGHMN-------------------------------EKN-FVGLTVNSEYIACGSES-----  115 (179)
Q Consensus        73 d~~v~iwd~~~~~~~~~~~~~~~-------------------------------~v~-~~~~~~~~~~~~~~~~d-----  115 (179)
                      ++.|.-+|.++++.+-.+..-..                               .++ .+++.|+..+++.+...     
T Consensus       180 ~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~  259 (527)
T TIGR03075       180 RGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWN  259 (527)
T ss_pred             CcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCC
Confidence            68899999999887655432111                               111 23566655566555421     


Q ss_pred             C-----------cEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCC---eEEEEeCCCcEEEEeecC
Q 038439          116 N-----------EVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSP---TMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       116 ~-----------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~  179 (179)
                      +           .|.-.|+++++..-.++...++.-.....   ....=+....+|+   .++.+..+|.+++.|-++
T Consensus       260 ~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~---~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~t  334 (527)
T TIGR03075       260 SHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGV---NEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTN  334 (527)
T ss_pred             CCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCC---CCcEEEEeccCCcEEEEEEEeCCCceEEEEECCC
Confidence            1           57778899998876666544433221111   1111122334665   777899999999988653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=83.85  E-value=14  Score=26.83  Aligned_cols=70  Identities=11%  Similarity=0.041  Sum_probs=45.9

Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCCC--CCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccC
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGHM--NEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFS  135 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~  135 (179)
                      +.++.+..+|.+.-.|..+++.+.......  ..+..-.+..+|+ ++.++.++.++.+|.++++.+......
T Consensus        69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~  140 (370)
T COG1520          69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVG  140 (370)
T ss_pred             CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecC
Confidence            677777888888888888877554332211  1122222223666 777888898999999888887666553

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=83.69  E-value=7.2  Score=26.87  Aligned_cols=73  Identities=12%  Similarity=0.177  Sum_probs=45.5

Q ss_pred             CCCeEEEEEee------C-CCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEE
Q 038439           94 MNEKNFVGLTV------N-SEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTA  166 (179)
Q Consensus        94 ~~~v~~~~~~~------~-~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  166 (179)
                      ...|+|++--.      + -..++.|.++|.|.+.|.+....+....+....         ..-...-.|..-.-.++++
T Consensus       176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvP---------v~i~~~G~~devdyRI~Va  246 (257)
T PF14779_consen  176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVP---------VFISVSGQYDEVDYRIVVA  246 (257)
T ss_pred             CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCc---------eEEEEEeeeeccceEEEEE
Confidence            34567765432      1 235889999999999999988777776664321         1111222343123347788


Q ss_pred             eCCCcEEEE
Q 038439          167 NSQGTIKVL  175 (179)
Q Consensus       167 ~~dg~i~iw  175 (179)
                      +.||.|++.
T Consensus       247 ~Rdg~iy~i  255 (257)
T PF14779_consen  247 CRDGKIYTI  255 (257)
T ss_pred             eCCCEEEEE
Confidence            889988763

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=83.53  E-value=14  Score=26.36  Aligned_cols=76  Identities=9%  Similarity=0.101  Sum_probs=47.1

Q ss_pred             CeEEEEEeeCCCEEEEeccCCcEEEEEcCC------CccccccccCCCCCCCCcccCCcceEEEEEEccCCC--------
Q 038439           96 EKNFVGLTVNSEYIACGSESNEVYVYHKEI------SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSP--------  161 (179)
Q Consensus        96 ~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------  161 (179)
                      ..+.++++|.+.+.++....+...+||...      .+++. .....+..     .......+.+.|+....        
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~-vtiP~~~~-----~~~~~~PTGiVfN~~~~F~vt~~g~   97 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLV-VVIPAPPP-----LAAEGTPTGQVFNGSDTFVVSGEGI   97 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceE-EEecCCCC-----CCCCCCccEEEEeCCCceEEcCCCc
Confidence            357899999998888888889999999861      21111 11111000     00023456666654322        


Q ss_pred             ----eEEEEeCCCcEEEEee
Q 038439          162 ----TMLTANSQGTIKVLVL  177 (179)
Q Consensus       162 ----~l~~~~~dg~i~iwd~  177 (179)
                          .++.+++||+|.-|..
T Consensus        98 ~~~a~Fif~tEdGTisaW~p  117 (336)
T TIGR03118        98 TGPSRFLFVTEDGTLSGWAP  117 (336)
T ss_pred             ccceeEEEEeCCceEEeecC
Confidence                2677889999999973

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=83.34  E-value=11  Score=25.36  Aligned_cols=71  Identities=13%  Similarity=0.105  Sum_probs=41.1

Q ss_pred             CeEEEecC--CCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEE-EeccCCcEEEEEcCCCccccccccC
Q 038439           65 DELASAST--DSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIA-CGSESNEVYVYHKEISKPVTWHRFS  135 (179)
Q Consensus        65 ~~l~~~~~--d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~d~~v~vwd~~~~~~~~~~~~~  135 (179)
                      .++.+.+.  ...|++||+.+++.+.+-+-....+..--...-+.++. -.-.++.-..+|.++.+.+..+...
T Consensus        57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~  130 (262)
T COG3823          57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE  130 (262)
T ss_pred             EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC
Confidence            34455544  34799999998877655443211222111111244433 3345788888999988887776653

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.30  E-value=29  Score=29.87  Aligned_cols=31  Identities=10%  Similarity=0.164  Sum_probs=28.5

Q ss_pred             cceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          148 SYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       148 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ..+|..+....+.+.+++-+..|.|.+||+.
T Consensus       242 ~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~  272 (1311)
T KOG1900|consen  242 KDPIRQITIDNSRNILYVLSEKGTVSAYDIG  272 (1311)
T ss_pred             CCcceeeEeccccceeeeeccCceEEEEEcc
Confidence            6789999999989999999999999999985

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=83.21  E-value=16  Score=30.09  Aligned_cols=52  Identities=13%  Similarity=0.114  Sum_probs=36.1

Q ss_pred             CcEEEEecCCCcceee-ecCCCCCeEEEEEeeCCCEEEE-eccCC-----cEEEEEcCCC
Q 038439           74 STLRLWDVKENLPVRT-FRGHMNEKNFVGLTVNSEYIAC-GSESN-----EVYVYHKEIS  126 (179)
Q Consensus        74 ~~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~-~~~d~-----~v~vwd~~~~  126 (179)
                      +.+.+-|.....+... + .+...+.+-+|+|||++|+- .+.++     .|++-|+++.
T Consensus       329 ~~L~~~D~dG~n~~~ve~-~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~  387 (912)
T TIGR02171       329 GNLAYIDYTKGASRAVEI-EDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNAS  387 (912)
T ss_pred             CeEEEEecCCCCceEEEe-cCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhcc
Confidence            4777777765544432 3 35777888999999999876 33333     4888888874

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=82.85  E-value=20  Score=27.66  Aligned_cols=60  Identities=15%  Similarity=0.135  Sum_probs=42.5

Q ss_pred             CCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          105 NSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       105 ~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      ..-++++++..|-|++||.-..+....++.-            +..|-.+....+|.++++.+.. ++.+-|+
T Consensus       572 esGyIa~as~kGDirLyDRig~rAKtalP~l------------G~aIk~idvta~Gk~ilaTCk~-yllL~d~  631 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGL------------GDAIKHIDVTANGKHILATCKN-YLLLTDV  631 (776)
T ss_pred             cCceEEEecCCCceeeehhhcchhhhcCccc------------ccceeeeEeecCCcEEEEeecc-eEEEEec
Confidence            3558999999999999997543333222211            5678889999999998887754 5655554

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=82.74  E-value=13  Score=26.40  Aligned_cols=58  Identities=10%  Similarity=0.136  Sum_probs=37.9

Q ss_pred             CCEEEEeccCCcEEEEEcCC--CccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEe-CCCcEEEEeec
Q 038439          106 SEYIACGSESNEVYVYHKEI--SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN-SQGTIKVLVLA  178 (179)
Q Consensus       106 ~~~~~~~~~d~~v~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~  178 (179)
                      +++++.|+++|. .+.++..  .+......              ...|.++...+..+.|++-+ ....++.+++.
T Consensus        13 ~~~lL~GTe~Gl-y~~~~~~~~~~~~kl~~--------------~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~   73 (302)
T smart00036       13 GKWLLVGTEEGL-YVLNISDQPGTLEKLIG--------------RRSVTQIWVLEENNVLLMISGKKPQLYSHPLS   73 (302)
T ss_pred             CcEEEEEeCCce-EEEEcccCCCCeEEecC--------------cCceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence            368999999885 4555543  22332222              55799999988777666654 34459999874

Unpublished observations.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=82.70  E-value=19  Score=27.31  Aligned_cols=55  Identities=7%  Similarity=-0.091  Sum_probs=33.0

Q ss_pred             ccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCc--ceeeec-----CCCCCeEEEEEeeCC
Q 038439           52 HKKAVSYVKFLSN-DELASASTDSTLRLWDVKENL--PVRTFR-----GHMNEKNFVGLTVNS  106 (179)
Q Consensus        52 ~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~--~~~~~~-----~~~~~v~~~~~~~~~  106 (179)
                      .-..-+.|+|.|+ ..|++--..|.|++++...+.  .+..+.     ........|+++|+-
T Consensus        28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            3345578889999 555444436888888765432  121111     124567789999873

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=82.59  E-value=6.6  Score=22.01  Aligned_cols=29  Identities=21%  Similarity=0.274  Sum_probs=23.4

Q ss_pred             eEEEEEEccCCCeEEEEeC-CCcEEEEeec
Q 038439          150 FISAVCWKSDSPTMLTANS-QGTIKVLVLA  178 (179)
Q Consensus       150 ~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~  178 (179)
                      ..+.+.++|++++|+.++. .+.|++|..+
T Consensus        55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~   84 (86)
T PF01731_consen   55 FANGIAISPDKKYLYVASSLAHSIHVYKRH   84 (86)
T ss_pred             CCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence            4577889999998877666 6889999865

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=82.47  E-value=6.6  Score=21.99  Aligned_cols=49  Identities=18%  Similarity=0.331  Sum_probs=31.5

Q ss_pred             CcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEec-cCCcEEEEEcCC
Q 038439           74 STLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGS-ESNEVYVYHKEI  125 (179)
Q Consensus        74 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d~~v~vwd~~~  125 (179)
                      +.|.-||..+   .+.....-.....+.++|++++|++++ ..+.|++|..+.
T Consensus        36 ~~Vvyyd~~~---~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~   85 (86)
T PF01731_consen   36 GNVVYYDGKE---VKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRHK   85 (86)
T ss_pred             ceEEEEeCCE---eEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence            4555666432   223333334567899999999877665 468899998753

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=81.64  E-value=16  Score=25.88  Aligned_cols=68  Identities=13%  Similarity=0.200  Sum_probs=44.8

Q ss_pred             eeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCe-----EEEEEeeCCCEEEEeccCCcEEEEEc
Q 038439           56 VSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEK-----NFVGLTVNSEYIACGSESNEVYVYHK  123 (179)
Q Consensus        56 i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~~~~d~~v~vwd~  123 (179)
                      |+++...++ .+|+++-.-..|.+.|.++++.+..+.+....-     ...++-.+.+++-.+..++.|.++|=
T Consensus       146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN  219 (299)
T PF14269_consen  146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN  219 (299)
T ss_pred             eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence            566666666 888888888899999988988887776542211     11334344555545556677777775

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=81.50  E-value=6  Score=31.78  Aligned_cols=67  Identities=7%  Similarity=0.153  Sum_probs=43.4

Q ss_pred             CceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEc
Q 038439           54 KAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHK  123 (179)
Q Consensus        54 ~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~  123 (179)
                      ..++++.-+|. ..++.++.|+.+++|++...+.-.... ...+-..+.|..+|  +++...|+.+.-|.-
T Consensus        15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~   82 (1636)
T KOG3616|consen   15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKE   82 (1636)
T ss_pred             ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeec
Confidence            44567777788 889999999999999987654422222 12233445565555  555666777766753

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=81.08  E-value=17  Score=25.87  Aligned_cols=115  Identities=9%  Similarity=-0.011  Sum_probs=63.8

Q ss_pred             ceeEEEEeeC-CeEEEecCCCcEEEEecC------CC-cceeeecC-----CCCCeEEEEEeeCCC------------EE
Q 038439           55 AVSYVKFLSN-DELASASTDSTLRLWDVK------EN-LPVRTFRG-----HMNEKNFVGLTVNSE------------YI  109 (179)
Q Consensus        55 ~i~~~~~~~~-~~l~~~~~d~~v~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~------------~~  109 (179)
                      .-+.|+++|. ...++....+...+||..      .. .++-++..     .....+.+.|+....            .+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            3467888888 677777777888899886      11 12222221     123456666653222            25


Q ss_pred             EEeccCCcEEEEEcCCCcc---ccccccCCCCCCCCcccCCcceEEEEEEcc--CCCeEEEEe-CCCcEEEEee
Q 038439          110 ACGSESNEVYVYHKEISKP---VTWHRFSSPDMDDTDEDAGSYFISAVCWKS--DSPTMLTAN-SQGTIKVLVL  177 (179)
Q Consensus       110 ~~~~~d~~v~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~-~dg~i~iwd~  177 (179)
                      +.+++||+|.-|...-...   ..........        ....-..+++..  .+.+|+.+. ..++|.|||-
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~--------~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~  169 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQ--------QGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKG  169 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCC--------CcceeeeeEEeecCCCceEEEeccCCCceEEecC
Confidence            6778999999998643322   1111111000        022233455543  356666554 4788999874

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PHA02790 Kelch-like protein; Provisional

Probab=80.85  E-value=23  Score=27.03  Aligned_cols=97  Identities=10%  Similarity=-0.062  Sum_probs=46.1

Q ss_pred             CeEEEecCCC---cEEEEecCCCccee--eecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCC
Q 038439           65 DELASASTDS---TLRLWDVKENLPVR--TFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDM  139 (179)
Q Consensus        65 ~~l~~~~~d~---~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~  139 (179)
                      ...+.|+.++   .+..||.++.+-..  .+......  ......++..++.|+   .+.+||.++.+-........+  
T Consensus       364 ~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~--~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~--  436 (480)
T PHA02790        364 VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK--SCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYP--  436 (480)
T ss_pred             EEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc--ceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCC--
Confidence            4445555443   46678876543221  11111111  112234566666664   477899876543322111110  


Q ss_pred             CCCcccCCcceEEEEEEccCCCeEEEEeCC-----CcEEEEeec
Q 038439          140 DDTDEDAGSYFISAVCWKSDSPTMLTANSQ-----GTIKVLVLA  178 (179)
Q Consensus       140 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~  178 (179)
                              ......+.  -+++..+.|+.+     ..+..||.+
T Consensus       437 --------r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~  470 (480)
T PHA02790        437 --------RDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNR  470 (480)
T ss_pred             --------ccccEEEE--ECCEEEEECCcCCCcccceEEEEECC
Confidence                    11111122  266777777754     357788865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	179
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-07
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-07
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-07
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-07
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-07
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-07
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-07
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-07
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-07
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-07
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-07
2h9l_A	329	Wdr5delta23 Length = 329		3e-07
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-07
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-07
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-07
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-07
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		9e-07
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		1e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		1e-05
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		3e-05
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-04
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-04
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		3e-04
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		5e-04

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56  VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
           VS+VKF  N + + +A+ D+TL+LWD  +   ++T+ GH NEK   F   +V   ++I  
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
           GSE N VY+++   KEI + +  H
Sbjct: 258 GSEDNMVYIWNLQTKEIVQKLQGH 281

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56  VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
           VS+VKF  N + + +A+ D+TL+LWD  +   ++T+ GH NEK   F   +V   ++I  
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
           GSE N VY+++   KEI + +  H
Sbjct: 261 GSEDNLVYIWNLQTKEIVQKLQGH 284

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56  VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
           VS+VKF  N + + +A+ D+TL+LWD  +   ++T+ GH NEK   F   +V   ++I  
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
           GSE N VY+++   KEI + +  H
Sbjct: 258 GSEDNLVYIWNLQTKEIVQKLQGH 281

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56  VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
           VS+VKF  N + + +A+ D+TL+LWD  +   ++T+ GH NEK   F   +V   ++I  
Sbjct: 200 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 259
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
           GSE N VY+++   KEI + +  H
Sbjct: 260 GSEDNLVYIWNLQTKEIVQKLQGH 283

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56  VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
           VS+VKF  N + + +A+ D+TL+LWD  +   ++T+ GH NEK   F   +V   ++I  
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
           GSE N VY+++   KEI + +  H
Sbjct: 258 GSEDNLVYIWNLQTKEIVQKLQGH 281

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56  VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
           VS+VKF  N + + +A+ D+TL+LWD  +   ++T+ GH NEK   F   +V   ++I  
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
           GSE N VY+++   KEI + +  H
Sbjct: 258 GSEDNLVYIWNLQTKEIVQKLQGH 281

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56  VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
           VS+VKF  N + + +A+ D+TL+LWD  +   ++T+ GH NEK   F   +V   ++I  
Sbjct: 196 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 255
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
           GSE N VY+++   KEI + +  H
Sbjct: 256 GSEDNLVYIWNLQTKEIVQKLQGH 279

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56  VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
           VS+VKF  N + + +A+ D+TL+LWD  +   ++T+ GH NEK   F   +V   ++I  
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
           GSE N VY+++   KEI + +  H
Sbjct: 261 GSEDNLVYIWNLQTKEIVQKLQGH 284

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56  VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
           VS+VKF  N + + +A+ D+TL+LWD  +   ++T+ GH NEK   F   +V   ++I  
Sbjct: 194 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 253
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
           GSE N VY+++   KEI + +  H
Sbjct: 254 GSEDNLVYIWNLQTKEIVQKLQGH 277

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56  VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
           VS+VKF  N + + +A+ D+TL+LWD  +   ++T+ GH NEK   F   +V   ++I  
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
           GSE N VY+++   KEI + +  H
Sbjct: 255 GSEDNLVYIWNLQTKEIVQKLQGH 278

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56  VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
           VS+VKF  N + + +A+ D+TL+LWD  +   ++T+ GH NEK   F   +V   ++I  
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
           GSE N VY+++   KEI + +  H
Sbjct: 255 GSEDNLVYIWNLQTKEIVQKLQGH 278

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56  VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
           VS+VKF  N + + +A+ D+TL+LWD  +   ++T+ GH NEK   F   +V   ++I  
Sbjct: 212 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 271
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
           GSE N VY+++   KEI + +  H
Sbjct: 272 GSEDNLVYIWNLQTKEIVQKLQGH 295

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56  VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
           VS+VKF  N + + +A+ D+TL+LWD  +   ++T+ GH NEK   F   +V   ++I  
Sbjct: 219 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 278
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
           GSE N VY+++   KEI + +  H
Sbjct: 279 GSEDNLVYIWNLQTKEIVQKLQGH 302

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56  VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
           VS+VKF  N + + +A+ D+TL+LWD  +   ++T+ GH NEK   F   +V   ++I  
Sbjct: 191 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 250
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
           GSE N VY+++   KEI + +  H
Sbjct: 251 GSEDNLVYIWNLQTKEIVQKLQGH 274

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56  VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
           VS+VKF  N + + +A+ D+TL+LWD  +   ++T+ GH NEK   F   +V   ++I  
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
           GSE N VY+++   KEI + +  H
Sbjct: 261 GSEDNLVYIWNLQTKEIVQKLQGH 284

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56  VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
           VS+VKF  N + + +A+ D+TL+LWD  +   ++T+ GH NEK   F   +V   ++I  
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 276
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
           GSE N VY+++   KEI + +  H
Sbjct: 277 GSEDNLVYIWNLQTKEIVQKLQGH 300

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 56  VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
           VS+VKF  N + + +A+ D+ L+LWD  +   ++T+ GH NEK   F   +V   ++I  
Sbjct: 198 VSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
           GSE N VY+++   KEI + +  H
Sbjct: 258 GSEDNMVYIWNLQTKEIVQKLQGH 281

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 51  GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLT--VNSEY 108
           GH   V  +K+     L S STD T+R+WD+K+      F GH +    + +    N +Y
Sbjct: 160 GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY 219
Query: 109 IACGSESNEVYVYH--KEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTA 166
           I  GS  N ++V+   KE S P        P +  T E+   YF+  +  +    ++ T 
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE-NPYFVGVL--RGHXASVRTV 276
Query: 167 NSQGTIKV 174
           +  G I V
Sbjct: 277 SGHGNIVV 284

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 51  GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLT--VNSEY 108
           GH   V  +K+     L S STD T+R+WD+K+      F GH +    + +    N +Y
Sbjct: 160 GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY 219
Query: 109 IACGSESNEVYVYH--KEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTA 166
           I  GS  N ++V+   KE S P        P +  T E+   YF+  +  +    ++ T 
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE-NPYFVGVL--RGHMASVRTV 276
Query: 167 NSQGTIKV 174
           +  G I V
Sbjct: 277 SGHGNIVV 284

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 49  VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE 107
           +HGH   VS V  + N D + SAS D T+++W+V+    V+TF GH      V    +  
Sbjct: 188 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT 247
Query: 108 YIACGSESNEVYVY 121
            IA  S    V V+
Sbjct: 248 LIASCSNDQTVRVW 261

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 49  VHGHKKAVSYVKFLSNDELA-SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE 107
           + GH   VS V   S+ + A S S D TLRLWD+      R F GH  +   V  + ++ 
Sbjct: 59  LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 118
Query: 108 YIACGSESNEVYVYH 122
            I  GS    + +++
Sbjct: 119 QIVSGSRDKTIKLWN 133

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 49  VHGHKKAVSYVKFLSNDELA-SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE 107
           + GH   VS V   S+ + A S S D TLRLWD+      R F GH  +   V  + ++ 
Sbjct: 82  LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 141
Query: 108 YIACGSESNEVYVYH 122
            I  GS    + +++
Sbjct: 142 QIVSGSRDKTIKLWN 156

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Query: 28  CVKYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDELASASTDSTLRLWDVK-ENLP 86
           CV ++  +   I+ + S  P  H        +  L+ +   S S D+T+RLWD++  +  
Sbjct: 182 CVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA 241
Query: 87  VRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTD 143
           VRT+ GH  + N V    + +    GS+     ++       +  +    PD +D +
Sbjct: 242 VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN-REPDRNDNE 297

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 33/157 (21%)
Query: 6   VKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIA--------------------KYQST 45
           V++W  R     L + ++  +  V  +PG   YIA                    +  S 
Sbjct: 189 VRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE 248
Query: 46  APCVHGHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKE-------NLPVR-----TFRG 92
                GHK +V  V F  + + + S S D +++LW+++          P       T+ G
Sbjct: 249 NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG 308
Query: 93  HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPV 129
           H +    V  T N EYI  GS+   V  + K+   P+
Sbjct: 309 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 345

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.98
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.98
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.97
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.97
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.97
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.97
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.97
2pm7_B	297	Protein transport protein SEC13, protein transport	99.97
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.97
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.97
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.96
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.96
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.96
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.96
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.96
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.96
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.96
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.96
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.96
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.96
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.96
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.96
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.96
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.96
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.96
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.96
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.96
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.96
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.96
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.96
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.96
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.96
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.96
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.96
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.95
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.95
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.95
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.95
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.95
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.95
3jro_A	753	Fusion protein of protein transport protein SEC13	99.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.95
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.94
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.94
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.94
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.94
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.94
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.94
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.94
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.94
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.94
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.94
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.93
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.93
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.93
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.93
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.92
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.91
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.91
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.87
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.87
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.86
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.85
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.84
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.84
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.83
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.83
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.83
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.83
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.83
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.82
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.81
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.81
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.8
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.79
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.78
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.78
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.78
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.78
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.76
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.76
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.76
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.75
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.75
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.75
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.75
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.74
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.73
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.73
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.71
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.7
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.65
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.65
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.64
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.63
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.63
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.62
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.62
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.61
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.59
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.57
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.55
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.54
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.54
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.52
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.52
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.52
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.48
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.47
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.47
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.46
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.45
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.45
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.43
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.38
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.35
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.35
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.34
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.33
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.32
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.32
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.31
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.31
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.29
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.28
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.27
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.27
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.26
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.23
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.22
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.21
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.2
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.2
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.19
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.17
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.16
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.12
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.11
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.1
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.09
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.08
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.05
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.05
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.02
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.02
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.01
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.01
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.99
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.97
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.97
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.94
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.93
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.92
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.9
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.88
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.87
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.85
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.85
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.85
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.79
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.73
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.71
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.66
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.65
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.62
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.6
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.6
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.58
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.53
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.51
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.49
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.48
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.48
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.47
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.46
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.46
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.45
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.41
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.39
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.35
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.32
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.31
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.25
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.24
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.21
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.2
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.17
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.09
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.08
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.06
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.02
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.96
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.94
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.92
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.88
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.8
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.77
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.75
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.74
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.73
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.73
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.68
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.66
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.65
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.6
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.56
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.48
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.47
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.46
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.44
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.39
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.38
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.37
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.33
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.3
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.25
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.24
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.16
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.15
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.14
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.1
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.09
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.97
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.97
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.92
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.86
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.83
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.73
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.63
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.54
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.51
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.48
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.48
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.45
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.33
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.26
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.16
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	95.93
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.79
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.79
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.63
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.47
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.45
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	95.42
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.16
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.98
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.94
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	94.86
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	94.34
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.1
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	94.09
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	94.0
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	93.8
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	93.77
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	93.56
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	93.49
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	93.29
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	93.2
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	93.17
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.02
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	92.7
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	92.21
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	92.14
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	92.07
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	91.94
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	91.84
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	91.72
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	91.68
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	91.03
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	89.46
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	88.08
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	87.44
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	87.24
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	86.86
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	85.51
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	84.68
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	82.75
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	82.48

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=8.8e-35  Score=204.48  Aligned_cols=167  Identities=11%  Similarity=0.138  Sum_probs=140.7

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe---------CCCcee----eecccCceeEEEEeeC-Ce
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY---------QSTAPC----VHGHKKAVSYVKFLSN-DE   66 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------~~~~~~----~~~~~~~i~~~~~~~~-~~   66 (179)
                      +.|++|+|||+++++++..+.|...|.+++|+|+|..+++++         ..++.+    ...|...|.+++|+|+ ..
T Consensus       154 ~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~  233 (365)
T 4h5i_A          154 KVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTV  233 (365)
T ss_dssp             CSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEE
T ss_pred             CCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCE
Confidence            368999999999999999999999999999999996555544         223332    4568889999999999 88


Q ss_pred             EEEecCCC----cEEEEecCCCcc----eeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCC
Q 038439           67 LASASTDS----TLRLWDVKENLP----VRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPD  138 (179)
Q Consensus        67 l~~~~~d~----~v~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~  138 (179)
                      +++++.|+    .+++|++.....    ...+..|...|.+++|+|+|++|++|+.|+.|+|||+++++++..+. .   
T Consensus       234 l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~-~---  309 (365)
T 4h5i_A          234 LIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFK-Q---  309 (365)
T ss_dssp             EEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEET-T---
T ss_pred             EEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEec-C---
Confidence            88888777    688899876543    34567788999999999999999999999999999999998776542 1   


Q ss_pred             CCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          139 MDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       139 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                            . |...|++++|+|||++|++++.|++|+|||+.
T Consensus       310 ------g-H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          310 ------A-HSFAITEVTISPDSTYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             ------S-SSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred             ------c-ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence                  1 27889999999999999999999999999985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=8.3e-34  Score=196.39  Aligned_cols=166  Identities=16%  Similarity=0.209  Sum_probs=147.2

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-Ce
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DE   66 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~   66 (179)
                      +.||.|++||+++++....+. +...|.+++|+|++..+++++          .+++.+  +.+|..+|.+++|+|+ .+
T Consensus       141 ~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~  220 (321)
T 3ow8_A          141 THVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQL  220 (321)
T ss_dssp             CTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCE
T ss_pred             cCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCE
Confidence            468999999999998887775 677899999999996555554          344555  7889999999999999 99


Q ss_pred             EEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccC
Q 038439           67 LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDA  146 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  146 (179)
                      |++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++++..+..  +         
T Consensus       221 l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--h---------  289 (321)
T 3ow8_A          221 LVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD--H---------  289 (321)
T ss_dssp             EEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC--C---------
T ss_pred             EEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcC--C---------
Confidence            99999999999999999999999999999999999999999999999999999999999887765431  1         


Q ss_pred             CcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          147 GSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       147 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                       ...|.+++|+|++++|++++.||.|++||+.
T Consensus       290 -~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          290 -QDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             -SSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             -CCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence             6789999999999999999999999999974

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4e-34  Score=197.99  Aligned_cols=167  Identities=14%  Similarity=0.255  Sum_probs=146.1

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-Ce
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DE   66 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~   66 (179)
                      +.|++|++||+.+++++..+. +...+.+++|+|+++.+++++          ..++..  +..|...|.+++|+|+ .+
T Consensus        99 s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~  178 (321)
T 3ow8_A           99 SLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKY  178 (321)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSE
T ss_pred             eCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCE
Confidence            469999999999999988886 677899999999996555554          233333  6778889999999999 99


Q ss_pred             EEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccC
Q 038439           67 LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDA  146 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  146 (179)
                      |++++.|+.|++||+++++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++....+.  .         |
T Consensus       179 lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~---------h  247 (321)
T 3ow8_A          179 LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS--G---------H  247 (321)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC--C---------C
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc--C---------C
Confidence            9999999999999999999999999999999999999999999999999999999999887665433  1         2


Q ss_pred             CcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          147 GSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       147 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                       ...|.+++|+|++++|++++.|+.|++||+++
T Consensus       248 -~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~  279 (321)
T 3ow8_A          248 -ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT  279 (321)
T ss_dssp             -SSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             -CCceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Confidence             67899999999999999999999999999863

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=6.6e-34  Score=198.52  Aligned_cols=166  Identities=15%  Similarity=0.166  Sum_probs=137.3

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee----eecccCceeEEEEeeC
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC----VHGHKKAVSYVKFLSN   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~----~~~~~~~i~~~~~~~~   64 (179)
                      +.|++|++||+.+++++..+. |...|.+++|+|++..+++++           +.++++    ...|...+.+++|+|+
T Consensus       146 s~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~  225 (344)
T 4gqb_B          146 SKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQ  225 (344)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSS
T ss_pred             eCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCC
Confidence            479999999999999999886 899999999999987766655           333333    3445667899999997


Q ss_pred             --CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCC-CEEEEeccCCcEEEEEcCCCccccccccCCCCCCC
Q 038439           65 --DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNS-EYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDD  141 (179)
Q Consensus        65 --~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~  141 (179)
                        .++++|+.|+.|++||+++++++..+.+|...|.+++|+|++ ++|++|+.|+.|++||+++++...   ...     
T Consensus       226 ~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~---~~~-----  297 (344)
T 4gqb_B          226 QSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR---SQA-----  297 (344)
T ss_dssp             CTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE---ECC-----
T ss_pred             CCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE---EcC-----
Confidence              678899999999999999999999999999999999999997 578999999999999999887543   222     


Q ss_pred             CcccCCcceEEEEEEccCCC-eEEEEeCCCcEEEEeecC
Q 038439          142 TDEDAGSYFISAVCWKSDSP-TMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       142 ~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~  179 (179)
                           |...|++++|+|+++ +|++++.|++|++|++.+
T Consensus       298 -----H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          298 -----HRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             -----CSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred             -----CCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence                 277899999999886 567899999999999853

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=7.6e-34  Score=198.24  Aligned_cols=167  Identities=15%  Similarity=0.202  Sum_probs=137.5

Q ss_pred             CCCccEEEEEcCCceeEEee-----cCCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEee
Q 038439            1 MAYGKVKVWCTRQEASVLNI-----DMKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLS   63 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~   63 (179)
                      +.||+|+|||+.+++.+...     .|.+.|++++|+|+++.+++++          .+++++  +.+|...|.+++|+|
T Consensus       100 s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~  179 (344)
T 4gqb_B          100 SDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASP  179 (344)
T ss_dssp             ETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS
T ss_pred             ECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecC
Confidence            47999999999988754432     4889999999999996666555          445555  889999999999999


Q ss_pred             C--CeEEEecCCCcEEEEecCCCcceeeec--CCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCccccccccCCCC
Q 038439           64 N--DELASASTDSTLRLWDVKENLPVRTFR--GHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISKPVTWHRFSSPD  138 (179)
Q Consensus        64 ~--~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~  138 (179)
                      +  ..|++++.|+.|++||++++++...+.  .+...+.+++|+|+ ++++++|+.|+.|++||+++++++..+..    
T Consensus       180 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~----  255 (344)
T 4gqb_B          180 HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV----  255 (344)
T ss_dssp             SCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEEC----
T ss_pred             CCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcC----
Confidence            8  578999999999999999998887765  34557899999995 66889999999999999999888766542    


Q ss_pred             CCCCcccCCcceEEEEEEccCC-CeEEEEeCCCcEEEEeecC
Q 038439          139 MDDTDEDAGSYFISAVCWKSDS-PTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       139 ~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~  179 (179)
                              |...|++++|+|++ ++|++|+.|++|+|||+++
T Consensus       256 --------h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~  289 (344)
T 4gqb_B          256 --------HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL  289 (344)
T ss_dssp             --------CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC
T ss_pred             --------CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC
Confidence                    27789999999998 5789999999999999763

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=6.6e-33  Score=193.20  Aligned_cols=167  Identities=19%  Similarity=0.311  Sum_probs=145.9

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCC----cee--eecccCceeEEEEee
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QST----APC--VHGHKKAVSYVKFLS   63 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~----~~~--~~~~~~~i~~~~~~~   63 (179)
                      |.||+|+|||..+++.+..+. |...|.+++|+|++..+++++          ...    +..  +.+|...|.++.|++
T Consensus        74 s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  153 (340)
T 1got_B           74 SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD  153 (340)
T ss_dssp             ETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEE
T ss_pred             eCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECC
Confidence            479999999999999888876 788899999999996555555          111    122  778999999999999


Q ss_pred             CCeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCc
Q 038439           64 NDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTD  143 (179)
Q Consensus        64 ~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~  143 (179)
                      ++.+++++.|+.|++||+++++.+..+.+|...|.+++|+|+++++++|+.|+.|++||+++++....+..         
T Consensus       154 ~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~---------  224 (340)
T 1got_B          154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG---------  224 (340)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECC---------
T ss_pred             CCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcC---------
Confidence            98899999999999999999999999999999999999999999999999999999999999877655431         


Q ss_pred             ccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          144 EDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       144 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                         |...|.+++|+|++++|++++.||.|++||+++
T Consensus       225 ---h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~  257 (340)
T 1got_B          225 ---HESDINAICFFPNGNAFATGSDDATCRLFDLRA  257 (340)
T ss_dssp             ---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ---CcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC
Confidence               167899999999999999999999999999863

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.9e-33  Score=197.18  Aligned_cols=165  Identities=19%  Similarity=0.241  Sum_probs=142.0

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee----eecccCceeEEEEeeC
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC----VHGHKKAVSYVKFLSN   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~----~~~~~~~i~~~~~~~~   64 (179)
                      +.|++|++||+++++++..+. |...|++++|+|++..+++++           +.++++    ...|...+.+++|+|+
T Consensus       158 s~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~  237 (357)
T 4g56_B          158 GKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPE  237 (357)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTT
T ss_pred             eCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhc
Confidence            468999999999999998886 889999999999986555554           233333    3456778999999998


Q ss_pred             --CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCC-CEEEEeccCCcEEEEEcCCCccccccccCCCCCCC
Q 038439           65 --DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNS-EYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDD  141 (179)
Q Consensus        65 --~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~  141 (179)
                        .+|++++.|+.|++||+++++++..+..|...|.+++|+|++ ++|++|+.|+.|++||+++++.+....        
T Consensus       238 ~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~--------  309 (357)
T 4g56_B          238 KDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS--------  309 (357)
T ss_dssp             STTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECC--------
T ss_pred             ccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECC--------
Confidence              678899999999999999999999999999999999999987 578999999999999999987764432        


Q ss_pred             CcccCCcceEEEEEEcc-CCCeEEEEeCCCcEEEEeec
Q 038439          142 TDEDAGSYFISAVCWKS-DSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       142 ~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~  178 (179)
                           |...|++++|+| ++++|++++.||+|++|++.
T Consensus       310 -----H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~  342 (357)
T 4g56_B          310 -----HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP  342 (357)
T ss_dssp             -----CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred             -----CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence                 277899999998 79999999999999999985

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.2e-32  Score=190.45  Aligned_cols=179  Identities=16%  Similarity=0.244  Sum_probs=145.7

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeC---------CCcee--eecccCceeEEEEeeC----
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQ---------STAPC--VHGHKKAVSYVKFLSN----   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~---------~~~~~--~~~~~~~i~~~~~~~~----   64 (179)
                      |.|++|+|||+.+++.+..+. |...|.+++|+|++..+++++.         .++.+  +.+|...|.++.++|.    
T Consensus        84 s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~  163 (319)
T 3frx_A           84 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKAD  163 (319)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC----
T ss_pred             eCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCC
Confidence            469999999999999888875 8899999999999966655552         22333  7789999999999985    


Q ss_pred             ---CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCC----
Q 038439           65 ---DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSP----  137 (179)
Q Consensus        65 ---~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~----  137 (179)
                         ..+++++.|+.|++||+++.+....+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+.....    
T Consensus       164 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~  243 (319)
T 3frx_A          164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSL  243 (319)
T ss_dssp             --CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEE
T ss_pred             CCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEE
Confidence               3799999999999999999988889999999999999999999999999999999999998776544332111    


Q ss_pred             ----C----------------------------CCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          138 ----D----------------------------MDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       138 ----~----------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                          .                            ........+...+.+++|+|+|++|++|+.||.|++||+.+
T Consensus       244 ~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          244 AFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             EECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             EEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence                0                            00000112245688999999999999999999999999864

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.1e-32  Score=189.37  Aligned_cols=168  Identities=21%  Similarity=0.260  Sum_probs=142.8

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-Ce
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DE   66 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~   66 (179)
                      +.||+|+|||+.+++.+..+. |..+|.+++|+|+++.+++++          .+++.+  +.+|...|.+++|+|+ .+
T Consensus        32 ~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~  111 (304)
T 2ynn_A           32 LYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY  111 (304)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSE
T ss_pred             cCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCE
Confidence            469999999999999888886 788999999999996666655          445555  8899999999999999 99


Q ss_pred             EEEecCCCcEEEEecCCC-cceeeecCCCCCeEEEEEee-CCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439           67 LASASTDSTLRLWDVKEN-LPVRTFRGHMNEKNFVGLTV-NSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE  144 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~  144 (179)
                      +++++.|++|++||++++ .....+.+|...|.+++|+| ++.+|++|+.|+.|++||++++.+......          
T Consensus       112 l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~----------  181 (304)
T 2ynn_A          112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT----------  181 (304)
T ss_dssp             EEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEEC----------
T ss_pred             EEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceecc----------
Confidence            999999999999999876 44567888999999999999 678999999999999999988766544332          


Q ss_pred             cCCcceEEEEEEcc--CCCeEEEEeCCCcEEEEeecC
Q 038439          145 DAGSYFISAVCWKS--DSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       145 ~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~iwd~~~  179 (179)
                       ++...+..+.|+|  ++++|++++.|+.|++||+++
T Consensus       182 -~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~  217 (304)
T 2ynn_A          182 -GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT  217 (304)
T ss_dssp             -CCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT
T ss_pred             -CCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC
Confidence             1145788888886  778999999999999999863

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.4e-32  Score=191.55  Aligned_cols=164  Identities=13%  Similarity=0.216  Sum_probs=141.6

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-Ce
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DE   66 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~   66 (179)
                      +.|++|++||+.+++++..+. |...|.+++|+|++..+++++          +.++++  +.+|...|.+++|+|+ ..
T Consensus       161 s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~  240 (340)
T 1got_B          161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA  240 (340)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSE
T ss_pred             ECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCE
Confidence            468999999999999988886 888999999999996555554          334444  7889999999999999 99


Q ss_pred             EEEecCCCcEEEEecCCCcceeeecC--CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439           67 LASASTDSTLRLWDVKENLPVRTFRG--HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE  144 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~  144 (179)
                      |++++.|+.|++||+++++.+..+..  +...+.+++|+|+++++++|+.|+.|++||+.+++.+..+.           
T Consensus       241 l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~-----------  309 (340)
T 1got_B          241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-----------  309 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-----------
T ss_pred             EEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEee-----------
Confidence            99999999999999998887776653  23479999999999999999999999999999887765543           


Q ss_pred             cCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439          145 DAGSYFISAVCWKSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       145 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  176 (179)
                      .| ...|.+++|+|++.+|++|+.|+.|++||
T Consensus       310 ~h-~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          310 GH-DNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CC-SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cC-CCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            12 77899999999999999999999999997

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-32  Score=196.11  Aligned_cols=167  Identities=22%  Similarity=0.341  Sum_probs=147.1

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-Ce
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DE   66 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~   66 (179)
                      |.||+|+|||+.+++....+. |...|.+++|+|++..+++++          ...+++  +.+|...|.+++|+|+ .+
T Consensus       127 s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~  206 (410)
T 1vyh_C          127 SEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH  206 (410)
T ss_dssp             ESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSE
T ss_pred             eCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCE
Confidence            479999999999999888886 889999999999996555555          334444  7889999999999999 89


Q ss_pred             EEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccC
Q 038439           67 LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDA  146 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  146 (179)
                      +++++.|+.|++||+++++++..+.+|...+.++.++|++.++++|+.|+.|++||+++++....+..  +         
T Consensus       207 l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~--h---------  275 (410)
T 1vyh_C          207 IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE--H---------  275 (410)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC--C---------
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecC--C---------
Confidence            99999999999999999999999999999999999999999999999999999999998877655431  1         


Q ss_pred             CcceEEEEEEccC--------------------CCeEEEEeCCCcEEEEeecC
Q 038439          147 GSYFISAVCWKSD--------------------SPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       147 ~~~~i~~~~~~~~--------------------~~~l~~~~~dg~i~iwd~~~  179 (179)
                       ...|.+++|+|+                    +.+|++|+.|+.|++||+++
T Consensus       276 -~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~  327 (410)
T 1vyh_C          276 -RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST  327 (410)
T ss_dssp             -SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred             -CceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence             678999999996                    67899999999999999863

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.4e-32  Score=187.71  Aligned_cols=167  Identities=17%  Similarity=0.278  Sum_probs=141.3

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCC-cee--eecccCceeEEEEeeC--
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QST-APC--VHGHKKAVSYVKFLSN--   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~-~~~--~~~~~~~i~~~~~~~~--   64 (179)
                      +.|++|++||+.+++++..+. |...|.+++|+|+++.+++++          ..+ ...  +.+|...|.+++|+|.  
T Consensus        74 s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~  153 (304)
T 2ynn_A           74 SDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP  153 (304)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCT
T ss_pred             CCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCC
Confidence            479999999999999988886 889999999999996666555          222 222  7789999999999994  


Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeec-CCCCCeEEEEEee--CCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCC
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFR-GHMNEKNFVGLTV--NSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDD  141 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~  141 (179)
                      ..|++++.|+.|++||+++......+. .+...+..+.|+|  ++.++++|+.|+.|++||+++++++..+..       
T Consensus       154 ~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-------  226 (304)
T 2ynn_A          154 STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG-------  226 (304)
T ss_dssp             TEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEEC-------
T ss_pred             CEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCC-------
Confidence            789999999999999998877665554 4557889999987  678999999999999999999887765542       


Q ss_pred             CcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          142 TDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       142 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                          | ...|..++|+|++++|++++.||.|++||+++
T Consensus       227 ----h-~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~  259 (304)
T 2ynn_A          227 ----H-MSNVSFAVFHPTLPIIISGSEDGTLKIWNSST  259 (304)
T ss_dssp             ----C-SSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             ----C-CCCEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence                2 67899999999999999999999999999763

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-32  Score=191.86  Aligned_cols=167  Identities=16%  Similarity=0.286  Sum_probs=139.2

Q ss_pred             CCCccEEEEEcCCceeEE--ee--cCCCceeEEEEcCCCCeEEEEe----------CCC--cee--eecccCceeEEEEe
Q 038439            1 MAYGKVKVWCTRQEASVL--NI--DMKANICCVKYNPGSSNYIAKY----------QST--APC--VHGHKKAVSYVKFL   62 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~--~~--~~~~~v~~~~~~~~~~~~~~~~----------~~~--~~~--~~~~~~~i~~~~~~   62 (179)
                      |.|++|+|||+.+++...  .+  .|...|.+++|+|++..+++++          ..+  +.+  +.+|...|.+++|+
T Consensus        35 ~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~s  114 (345)
T 3fm0_A           35 GGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA  114 (345)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEEC
T ss_pred             cCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEe
Confidence            479999999998876432  22  4888999999999996666555          222  223  78899999999999


Q ss_pred             eC-CeEEEecCCCcEEEEecCCCc---ceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCC
Q 038439           63 SN-DELASASTDSTLRLWDVKENL---PVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPD  138 (179)
Q Consensus        63 ~~-~~l~~~~~d~~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~  138 (179)
                      |+ .+|++++.|+.|++||++++.   .+..+..|...|.+++|+|++++|++++.|+.|++||.++++......+..+ 
T Consensus       115 p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h-  193 (345)
T 3fm0_A          115 PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH-  193 (345)
T ss_dssp             TTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCC-
T ss_pred             CCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC-
Confidence            99 999999999999999998753   3566778999999999999999999999999999999988764433334322 


Q ss_pred             CCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          139 MDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       139 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                               ...|++++|+|++++|++++.|++|++||+
T Consensus       194 ---------~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~  223 (345)
T 3fm0_A          194 ---------ESTVWSLAFDPSGQRLASCSDDRTVRIWRQ  223 (345)
T ss_dssp             ---------SSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             ---------CCceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence                     778999999999999999999999999986

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=7e-32  Score=185.77  Aligned_cols=168  Identities=19%  Similarity=0.228  Sum_probs=147.5

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-Ce
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DE   66 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~   66 (179)
                      +.||.|++|+..+++....+. |...|.+++|+|+++.+++++          ..++.+  +.+|...|.++.|+|+ .+
T Consensus        42 ~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  121 (312)
T 4ery_A           42 SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL  121 (312)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSE
T ss_pred             eCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence            468999999999998888775 888999999999996666665          344445  7889999999999999 99


Q ss_pred             EEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccC
Q 038439           67 LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDA  146 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  146 (179)
                      +++++.|+.|++||+++++.+..+..|...+.+++|+|+++++++++.|+.|++||+++++.+..+...           
T Consensus       122 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-----------  190 (312)
T 4ery_A          122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-----------  190 (312)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCS-----------
T ss_pred             EEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEecc-----------
Confidence            999999999999999999999999999999999999999999999999999999999988776544321           


Q ss_pred             CcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          147 GSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       147 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      +...+..++|+|++++|++++.|+.|++||+++
T Consensus       191 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  223 (312)
T 4ery_A          191 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK  223 (312)
T ss_dssp             SCCCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            155789999999999999999999999999863

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.7e-32  Score=194.47  Aligned_cols=167  Identities=17%  Similarity=0.240  Sum_probs=148.0

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-Ce
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DE   66 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~   66 (179)
                      |.|++|+|||+.+++++..+. |...|.+++|+|++..+++++          ..+.++  +.+|...|.++.++|+ .+
T Consensus       169 s~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~  248 (410)
T 1vyh_C          169 SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL  248 (410)
T ss_dssp             ETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSE
T ss_pred             eCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCE
Confidence            479999999999999888885 888999999999997666665          445555  7889999999999999 99


Q ss_pred             EEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeC--------------------CCEEEEeccCCcEEEEEcCCC
Q 038439           67 LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVN--------------------SEYIACGSESNEVYVYHKEIS  126 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~~~~~~~d~~v~vwd~~~~  126 (179)
                      +++++.|+.|++||+++++....+..|...|.+++|+|+                    +.++++|+.|+.|++||++++
T Consensus       249 l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~  328 (410)
T 1vyh_C          249 IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG  328 (410)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT
T ss_pred             EEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence            999999999999999999999999999999999999996                    678999999999999999998


Q ss_pred             ccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          127 KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      +++..+..           | ...|.+++|+|++++|++++.||.|++||+++
T Consensus       329 ~~~~~~~~-----------h-~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~  369 (410)
T 1vyh_C          329 MCLMTLVG-----------H-DNWVRGVLFHSGGKFILSCADDKTLRVWDYKN  369 (410)
T ss_dssp             EEEEEEEC-----------C-SSCEEEEEECSSSSCEEEEETTTEEEEECCTT
T ss_pred             ceEEEEEC-----------C-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            87765431           2 67899999999999999999999999999853

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.6e-32  Score=189.51  Aligned_cols=166  Identities=18%  Similarity=0.231  Sum_probs=143.8

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeCCC----------------cee--eecccCceeEEEE
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQST----------------APC--VHGHKKAVSYVKF   61 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~----------------~~~--~~~~~~~i~~~~~   61 (179)
                      |.||+|+|||..+++....+. +...|.+++|+|++..+++.+..+                ...  +.+|...|.++.|
T Consensus        83 s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  162 (354)
T 2pbi_B           83 SQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSF  162 (354)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEE
T ss_pred             eCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEE
Confidence            479999999999988877775 677899999999996555555111                111  6679999999999


Q ss_pred             eeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEee--CCCEEEEeccCCcEEEEEcCCCccccccccCCCC
Q 038439           62 LSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTV--NSEYIACGSESNEVYVYHKEISKPVTWHRFSSPD  138 (179)
Q Consensus        62 ~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~  138 (179)
                      +|+ ..+++++.|++|++||+++++.+..+.+|...|.+++|+|  ++.+|++|+.|+.|++||+++++++..+..    
T Consensus       163 ~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~----  238 (354)
T 2pbi_B          163 TNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFET----  238 (354)
T ss_dssp             CSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECC----
T ss_pred             eCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecC----
Confidence            999 8999999999999999999999999999999999999988  478999999999999999999887665432    


Q ss_pred             CCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          139 MDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       139 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                              |...|.+++|+|++++|++++.|++|++||++
T Consensus       239 --------h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~  270 (354)
T 2pbi_B          239 --------HESDVNSVRYYPSGDAFASGSDDATCRLYDLR  270 (354)
T ss_dssp             --------CSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             --------CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence                    26789999999999999999999999999986

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=5.5e-32  Score=201.40  Aligned_cols=174  Identities=18%  Similarity=0.225  Sum_probs=144.0

Q ss_pred             CCCccEEEEEcCCce--eEEeec-CCCceeEEEEcCCCCeEEEEeC------------CCcee--eecccCceeEEEEee
Q 038439            1 MAYGKVKVWCTRQEA--SVLNID-MKANICCVKYNPGSSNYIAKYQ------------STAPC--VHGHKKAVSYVKFLS   63 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~~~~~------------~~~~~--~~~~~~~i~~~~~~~   63 (179)
                      +.||+|+|||+.+++  ....+. |.++|.+++|+|+++.+++++.            .++.+  +.+|...|.+++|+|
T Consensus        78 ~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p  157 (611)
T 1nr0_A           78 DVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP  157 (611)
T ss_dssp             ETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECS
T ss_pred             eCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECC
Confidence            468999999987543  333443 8899999999999977777662            22233  678999999999999


Q ss_pred             C-C-eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCC
Q 038439           64 N-D-ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDD  141 (179)
Q Consensus        64 ~-~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~  141 (179)
                      + . .|++++.|++|++||...++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+....    .
T Consensus       158 ~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~----~  233 (611)
T 1nr0_A          158 SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS----L  233 (611)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTT----S
T ss_pred             CCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccc----c
Confidence            9 5 69999999999999999888889999999999999999999999999999999999999887765542110    0


Q ss_pred             CcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          142 TDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       142 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                       ....|...|.+++|+|++++|++++.|++|++||+++
T Consensus       234 -~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~  270 (611)
T 1nr0_A          234 -KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT  270 (611)
T ss_dssp             -SSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             -cccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCC
Confidence             0012377899999999999999999999999999863

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-31  Score=184.55  Aligned_cols=168  Identities=15%  Similarity=0.178  Sum_probs=132.2

Q ss_pred             CCCccEEEEEcCCc--eeEEee--c-CCCceeEEEEcCCCCeEEEEe--------CC---------Ccee--eecccCce
Q 038439            1 MAYGKVKVWCTRQE--ASVLNI--D-MKANICCVKYNPGSSNYIAKY--------QS---------TAPC--VHGHKKAV   56 (179)
Q Consensus         1 ~~d~~i~vwd~~~~--~~~~~~--~-~~~~v~~~~~~~~~~~~~~~~--------~~---------~~~~--~~~~~~~i   56 (179)
                      +.|++|++||+.++  +.+..+  . |...|.+++|+|++..+++++        +.         .+++  +.+|...|
T Consensus        31 ~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V  110 (330)
T 2hes_X           31 STDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEV  110 (330)
T ss_dssp             ESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CE
T ss_pred             cCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcE
Confidence            47999999999875  444555  2 888999999999996555554        11         1223  67899999


Q ss_pred             eEEEEeeC-CeEEEecCCCcEEEEecCCC----cceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccc
Q 038439           57 SYVKFLSN-DELASASTDSTLRLWDVKEN----LPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTW  131 (179)
Q Consensus        57 ~~~~~~~~-~~l~~~~~d~~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~  131 (179)
                      .+++|+|+ .+|++++.|+.|++||++..    +++..+..|...|.+++|+|++.+|++++.|+.|++||.+++.....
T Consensus       111 ~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~  190 (330)
T 2hes_X          111 KGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECV  190 (330)
T ss_dssp             EEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEE
Confidence            99999999 99999999999999999532    45677888999999999999999999999999999999887632222


Q ss_pred             cccCCCCCCCCcccCCcceEEEEEEccC--CCeEEEEeCCCcEEEEeec
Q 038439          132 HRFSSPDMDDTDEDAGSYFISAVCWKSD--SPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~  178 (179)
                      ..+..+          ...|.+++|+|+  +..|++++.|++|++||++
T Consensus       191 ~~~~~h----------~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~  229 (330)
T 2hes_X          191 AVLNGH----------EGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYM  229 (330)
T ss_dssp             EEECCC----------SSCEEEEEECCSSSSCEEEEEETTSCEEEEEEE
T ss_pred             EEccCC----------CCcEEEEEecCCCCeeEEEEEeCCCeEEEEEec
Confidence            223222          778999999998  6789999999999999974

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.4e-31  Score=186.27  Aligned_cols=164  Identities=16%  Similarity=0.292  Sum_probs=139.5

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCC--CCeEEEEe----------CCCcee--eecccCceeEEEEeeC-
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPG--SSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~--~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-   64 (179)
                      +.|++|++||+++++++..+. |...|.+++|+|+  +..+++++          +.++++  +.+|...|.+++|+|+ 
T Consensus       173 s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~  252 (354)
T 2pbi_B          173 SGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG  252 (354)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred             eCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCC
Confidence            468999999999999988886 8889999999885  43444444          445555  7889999999999999 


Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCC--CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCC
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGH--MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDT  142 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~  142 (179)
                      ..|++++.|++|++||++..+.+..+..+  ...+.+++|+|+++++++|+.|+.|++||+.+++.+..+.  .      
T Consensus       253 ~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~--~------  324 (354)
T 2pbi_B          253 DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF--G------  324 (354)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC--C------
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE--C------
Confidence            99999999999999999988777666543  3468899999999999999999999999999887765432  1      


Q ss_pred             cccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439          143 DEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  176 (179)
                          |...|++++|+|++++|++|+.|+.|++|+
T Consensus       325 ----h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          325 ----HENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             ----CSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             ----CCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence                277899999999999999999999999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.4e-31  Score=189.09  Aligned_cols=170  Identities=16%  Similarity=0.272  Sum_probs=140.2

Q ss_pred             CCCccEEEEEcCCceeEEee------cCCCceeEEEEcCCCCeEEEEe-----------C-CCcee--eecccCceeEEE
Q 038439            1 MAYGKVKVWCTRQEASVLNI------DMKANICCVKYNPGSSNYIAKY-----------Q-STAPC--VHGHKKAVSYVK   60 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~-----------~-~~~~~--~~~~~~~i~~~~   60 (179)
                      |.|++|++||+.+++.+..+      .|...|.+++|+|....++++|           + ..+++  +.+|...|.+++
T Consensus       177 s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~  256 (380)
T 3iz6_a          177 SGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVK  256 (380)
T ss_dssp             CTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEE
T ss_pred             CCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEE
Confidence            57999999999999988776      2678899999988433555555           1 22334  778999999999


Q ss_pred             EeeC-CeEEEecCCCcEEEEecCCCcceeeecCCC-------CCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccc
Q 038439           61 FLSN-DELASASTDSTLRLWDVKENLPVRTFRGHM-------NEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWH  132 (179)
Q Consensus        61 ~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~  132 (179)
                      |+|+ .+|++++.|++|++||+++++.+..+..+.       ..+.+++|+|+|+++++|+.||.|++||+.+++.+..+
T Consensus       257 ~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~  336 (380)
T 3iz6_a          257 FFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL  336 (380)
T ss_dssp             ECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred             EecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEE
Confidence            9999 999999999999999999998887775432       24889999999999999999999999999888766543


Q ss_pred             ccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          133 RFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ....        ..|...|++++|+|++++|++|+.|+.|++|++.
T Consensus       337 ~~~~--------~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          337 GTLQ--------NSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             CCSC--------SSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred             eccc--------CCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence            2110        1227789999999999999999999999999985

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=7.7e-31  Score=181.96  Aligned_cols=179  Identities=13%  Similarity=0.194  Sum_probs=139.9

Q ss_pred             CCCccEEEEEcCCce-----eEEeec-CCCceeEEEEcCCCCeEEEEe--------------------------------
Q 038439            1 MAYGKVKVWCTRQEA-----SVLNID-MKANICCVKYNPGSSNYIAKY--------------------------------   42 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~-----~~~~~~-~~~~v~~~~~~~~~~~~~~~~--------------------------------   42 (179)
                      |.||+|+|||+.+.+     +...+. |...|.+++|+|++..+++++                                
T Consensus        58 s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (340)
T 4aow_A           58 SRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS  137 (340)
T ss_dssp             ETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred             cCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEe
Confidence            579999999987643     344454 789999999999996666554                                


Q ss_pred             --------------------CCCce-e--eecccCceeEEEEeeC---CeEEEecCCCcEEEEecCCCcceeeecCCCCC
Q 038439           43 --------------------QSTAP-C--VHGHKKAVSYVKFLSN---DELASASTDSTLRLWDVKENLPVRTFRGHMNE   96 (179)
Q Consensus        43 --------------------~~~~~-~--~~~~~~~i~~~~~~~~---~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~   96 (179)
                                          ..... .  ..+|...+..++|+++   ..+++++.|+.|++||+++++.+..+.+|...
T Consensus       138 ~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~  217 (340)
T 4aow_A          138 SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY  217 (340)
T ss_dssp             TTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             ecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCc
Confidence                                00111 1  4567888999999887   56789999999999999999999999999999


Q ss_pred             eEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCC-------------------------------------CC
Q 038439           97 KNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSP-------------------------------------DM  139 (179)
Q Consensus        97 v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~-------------------------------------~~  139 (179)
                      |.+++|+|++++|++|+.|+.|++||+++.+++..+.....                                     ..
T Consensus       218 v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~  297 (340)
T 4aow_A          218 LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEV  297 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccc
Confidence            99999999999999999999999999998765544332111                                     00


Q ss_pred             CCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          140 DDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       140 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      .......|...|++++|+|++++|++|+.||.|+|||+++
T Consensus       298 ~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t  337 (340)
T 4aow_A          298 ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI  337 (340)
T ss_dssp             ------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             eeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence            0001112367899999999999999999999999999875

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=8.4e-31  Score=181.15  Aligned_cols=166  Identities=17%  Similarity=0.177  Sum_probs=140.0

Q ss_pred             CCCccEEEEEcCCc-----eeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEe
Q 038439            1 MAYGKVKVWCTRQE-----ASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFL   62 (179)
Q Consensus         1 ~~d~~i~vwd~~~~-----~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~   62 (179)
                      |.|++|++|++...     .++..+. |...|.+++|+|++..+++++          .+++.+  +.+|...|.+++|+
T Consensus        37 s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~  116 (319)
T 3frx_A           37 SRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID  116 (319)
T ss_dssp             ETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred             cCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEc
Confidence            47999999998642     3455554 889999999999997666665          445555  88999999999999


Q ss_pred             eC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeC------CCEEEEeccCCcEEEEEcCCCccccccccC
Q 038439           63 SN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVN------SEYIACGSESNEVYVYHKEISKPVTWHRFS  135 (179)
Q Consensus        63 ~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~  135 (179)
                      |+ .++++++.|+.|++||++ ++.+..+.+|...+.++.|.|.      +..+++++.|+.|++||+++.+....+.  
T Consensus       117 ~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--  193 (319)
T 3frx_A          117 KKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI--  193 (319)
T ss_dssp             TTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC--
T ss_pred             CCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec--
Confidence            99 999999999999999997 4567788899999999999985      4589999999999999999877654432  


Q ss_pred             CCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          136 SPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       136 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                               . |...|.+++|+|++++|++++.||.|++||+++
T Consensus       194 ---------~-h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~  227 (319)
T 3frx_A          194 ---------G-HNSNINTLTASPDGTLIASAGKDGEIMLWNLAA  227 (319)
T ss_dssp             ---------C-CCSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred             ---------C-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence                     1 277899999999999999999999999999863

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.8e-31  Score=186.17  Aligned_cols=167  Identities=17%  Similarity=0.227  Sum_probs=131.9

Q ss_pred             CCCccEEEEEcCCceeEEe-----ecCCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEee
Q 038439            1 MAYGKVKVWCTRQEASVLN-----IDMKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLS   63 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~   63 (179)
                      +.||+|+|||+.+++....     ..|...|++++|+|++..+++++          .+++.+  +.+|...|.+++|+|
T Consensus       112 s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~  191 (357)
T 4g56_B          112 SDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP  191 (357)
T ss_dssp             ETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred             ECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcc
Confidence            4689999999988765432     24789999999999996666655          344555  788999999999999


Q ss_pred             C--CeEEEecCCCcEEEEecCCCcceeeec--CCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCccccccccCCCC
Q 038439           64 N--DELASASTDSTLRLWDVKENLPVRTFR--GHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISKPVTWHRFSSPD  138 (179)
Q Consensus        64 ~--~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~  138 (179)
                      +  ..+++++.|+.|++||++++++...+.  .+...+.+++|+|+ +.+|++|+.|+.|++||+++++.+..+..  + 
T Consensus       192 ~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~--~-  268 (357)
T 4g56_B          192 GKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV--H-  268 (357)
T ss_dssp             TCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC--C-
T ss_pred             CCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEec--c-
Confidence            8  578999999999999999887766543  45677999999997 56789999999999999999887765432  1 


Q ss_pred             CCCCcccCCcceEEEEEEccCC-CeEEEEeCCCcEEEEeecC
Q 038439          139 MDDTDEDAGSYFISAVCWKSDS-PTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       139 ~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~  179 (179)
                               ...|++++|+|++ ++|++++.|++|+|||+++
T Consensus       269 ---------~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~  301 (357)
T 4g56_B          269 ---------SQNITGLAYSYHSSPFLASISEDCTVAVLDADF  301 (357)
T ss_dssp             ---------SSCEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred             ---------ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence                     6789999999987 5789999999999999863

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.2e-30  Score=185.09  Aligned_cols=178  Identities=14%  Similarity=0.231  Sum_probs=136.4

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee-eecccCceeEEEEee-C-Ce
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC-VHGHKKAVSYVKFLS-N-DE   66 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~i~~~~~~~-~-~~   66 (179)
                      +.|++|+|||+.+++.+..+. |...|.+++|+|++..+++++          ..++.. ...+...+.+++|+| + .+
T Consensus       142 ~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~  221 (393)
T 1erj_A          142 AEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKY  221 (393)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCE
T ss_pred             cCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCE
Confidence            468999999999999888886 888999999999997766665          233333 334667899999999 5 89


Q ss_pred             EEEecCCCcEEEEecCCCcceeee-------cCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCC
Q 038439           67 LASASTDSTLRLWDVKENLPVRTF-------RGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDM  139 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~  139 (179)
                      +++++.|+.|++||+++++.+..+       .+|...|.+++|+|++++|++|+.|+.|++||+++..............
T Consensus       222 l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~  301 (393)
T 1erj_A          222 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT  301 (393)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------C
T ss_pred             EEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCc
Confidence            999999999999999998877666       4688899999999999999999999999999998754322111100000


Q ss_pred             -CCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          140 -DDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       140 -~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                       ...... |...|.+++|+|++++|++|+.|+.|++||+++
T Consensus       302 ~~~~~~~-h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~  341 (393)
T 1erj_A          302 CEVTYIG-HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS  341 (393)
T ss_dssp             EEEEEEC-CSSCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred             ceEEEec-ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence             001112 267899999999999999999999999999753

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.5e-30  Score=177.11  Aligned_cols=170  Identities=12%  Similarity=0.238  Sum_probs=133.8

Q ss_pred             CCCccEEEEEcCCce--eEEeec-CCCceeEEEEcCC--CCeEEEEe----------CCC---cee-eecccCceeEEEE
Q 038439            1 MAYGKVKVWCTRQEA--SVLNID-MKANICCVKYNPG--SSNYIAKY----------QST---APC-VHGHKKAVSYVKF   61 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~~~~~~----------~~~---~~~-~~~~~~~i~~~~~   61 (179)
                      |.|++|+|||+.+++  .+..+. |...|.+++|+|+  +..+++++          +..   ... +.+|...|.+++|
T Consensus        74 s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~  153 (297)
T 2pm7_B           74 SYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW  153 (297)
T ss_dssp             ETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEE
T ss_pred             cCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEee
Confidence            479999999998874  444444 7889999999997  64555544          111   122 6789999999999


Q ss_pred             eeC--------------CeEEEecCCCcEEEEecCCCc----ceeeecCCCCCeEEEEEeeCC---CEEEEeccCCcEEE
Q 038439           62 LSN--------------DELASASTDSTLRLWDVKENL----PVRTFRGHMNEKNFVGLTVNS---EYIACGSESNEVYV  120 (179)
Q Consensus        62 ~~~--------------~~l~~~~~d~~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~d~~v~v  120 (179)
                      +|+              .+|++++.|+.|++||+++++    ....+.+|...|.+++|+|++   .+|++++.|+.|++
T Consensus       154 ~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~i  233 (297)
T 2pm7_B          154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCII  233 (297)
T ss_dssp             CCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred             cCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEE
Confidence            985              489999999999999998765    556788999999999999984   88999999999999


Q ss_pred             EEcCCCccccc-cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          121 YHKEISKPVTW-HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       121 wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ||+++...... .....       .. +...|.+++|+|++++|++++.|+.|++|+.+
T Consensus       234 Wd~~~~~~~~~~~~~~~-------~~-~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          234 WTQDNEQGPWKKTLLKE-------EK-FPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EEESSTTSCCEEEESSS-------SC-CSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EEeCCCCCccceeeeec-------cc-CCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            99987532111 11100       01 16689999999999999999999999999975

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.98  E-value=2.8e-31  Score=187.52  Aligned_cols=167  Identities=19%  Similarity=0.289  Sum_probs=139.4

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeCCC----------------c-ee--eecccCceeEEE
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQST----------------A-PC--VHGHKKAVSYVK   60 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~----------------~-~~--~~~~~~~i~~~~   60 (179)
                      |.||+|+|||+.+++....+. |...|.+++|+|++..+++++..+                . ..  +.+|.+.|.++.
T Consensus        85 s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~  164 (380)
T 3iz6_a           85 SQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQ  164 (380)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCB
T ss_pred             eCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEE
Confidence            479999999999999888886 788899999999996555554111                0 11  678999999999


Q ss_pred             EeeC--CeEEEecCCCcEEEEecCCCcceeee-----cCCCCCeEEEEEee-CCCEEEEeccCCcEEEEEcCCC-ccccc
Q 038439           61 FLSN--DELASASTDSTLRLWDVKENLPVRTF-----RGHMNEKNFVGLTV-NSEYIACGSESNEVYVYHKEIS-KPVTW  131 (179)
Q Consensus        61 ~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~~~~~~~d~~v~vwd~~~~-~~~~~  131 (179)
                      |.|+  ..|++++.|++|++||+++++.+..+     .+|...+.+++|++ ++.+|++|+.|+.|++||++.. +.+..
T Consensus       165 ~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~  244 (380)
T 3iz6_a          165 YVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT  244 (380)
T ss_dssp             CCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEE
T ss_pred             EecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEE
Confidence            9997  67999999999999999999888776     56888999999987 7899999999999999999853 44433


Q ss_pred             cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      +.           . |...|.+++|+|++++|++++.||+|++||+++
T Consensus       245 ~~-----------~-h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~  280 (380)
T 3iz6_a          245 YH-----------G-HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT  280 (380)
T ss_dssp             EC-----------C-CSSCCCEEEECTTSSEEEEECSSSCEEEEETTT
T ss_pred             EC-----------C-cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC
Confidence            22           1 277899999999999999999999999999863

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.98  E-value=1.1e-30  Score=186.10  Aligned_cols=168  Identities=16%  Similarity=0.204  Sum_probs=140.5

Q ss_pred             CCCccEEEEEcCCceeEEee-cCCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-Ce
Q 038439            1 MAYGKVKVWCTRQEASVLNI-DMKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DE   66 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~   66 (179)
                      +.||.|++||+.+++....+ .|...|.+++|+|++..+++++          ..++.+  +.+|...|.+++|+|+ .+
T Consensus       116 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~  195 (420)
T 3vl1_A          116 TTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN  195 (420)
T ss_dssp             ETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTE
T ss_pred             ECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCE
Confidence            36899999999999988876 5899999999999997666555          334444  7889999999999999 99


Q ss_pred             EEEecCCCcEEEEecCCCcceeeecC---CCCCeEE---------------------EEEeeCCCEEEEeccCCcEEEEE
Q 038439           67 LASASTDSTLRLWDVKENLPVRTFRG---HMNEKNF---------------------VGLTVNSEYIACGSESNEVYVYH  122 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~~v~~---------------------~~~~~~~~~~~~~~~d~~v~vwd  122 (179)
                      |++++.|+.|++||+++++.+..+..   +...+.+                     ++|+|+++++++++.||.|++||
T Consensus       196 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d  275 (420)
T 3vl1_A          196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHN  275 (420)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEE
T ss_pred             EEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEE
Confidence            99999999999999999988888764   3334444                     44578899999999999999999


Q ss_pred             cCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCC-eEEEEeCCCcEEEEeecC
Q 038439          123 KEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSP-TMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~  179 (179)
                      +++++.......           .|...|.+++|+|+++ +|++++.||.|++||+++
T Consensus       276 ~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  322 (420)
T 3vl1_A          276 VFSKEQTIQLPS-----------KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRS  322 (420)
T ss_dssp             TTTCCEEEEECC-----------TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             CCCCceeEEccc-----------ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCC
Confidence            999876655432           1267899999999998 999999999999999863

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.97  E-value=1.7e-29  Score=176.18  Aligned_cols=164  Identities=12%  Similarity=0.143  Sum_probs=132.0

Q ss_pred             CCCccEEEEEcCCc-------eeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEE
Q 038439            1 MAYGKVKVWCTRQE-------ASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVK   60 (179)
Q Consensus         1 ~~d~~i~vwd~~~~-------~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~   60 (179)
                      |.|++|++||+.+.       .+...+. |...|.+++|+|++..+++++          .+++.+  +.+|...|.+++
T Consensus        46 s~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~  125 (343)
T 2xzm_R           46 SRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVA  125 (343)
T ss_dssp             ETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEE
T ss_pred             cCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEE
Confidence            46999999998753       3444554 889999999999996655555          445555  789999999999


Q ss_pred             EeeC-CeEEEecCCCcEEEEecCCCcceeeec---CCCCCeEEEEEeeCC----------CEEEEeccCCcEEEEEcCCC
Q 038439           61 FLSN-DELASASTDSTLRLWDVKENLPVRTFR---GHMNEKNFVGLTVNS----------EYIACGSESNEVYVYHKEIS  126 (179)
Q Consensus        61 ~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~----------~~~~~~~~d~~v~vwd~~~~  126 (179)
                      |+|+ .+|++++.|+.|++||+... ......   .|...+.+++|+|++          .++++++.|+.|++||.. .
T Consensus       126 ~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~  203 (343)
T 2xzm_R          126 FSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-F  203 (343)
T ss_dssp             ECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-T
T ss_pred             ECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-C
Confidence            9999 99999999999999999843 333332   678889999999986          789999999999999943 3


Q ss_pred             ccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          127 KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      +....+.  .          |...|.+++|+|++++|++|+.||.|++||+.
T Consensus       204 ~~~~~~~--~----------h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~  243 (343)
T 2xzm_R          204 QIRYTFK--A----------HESNVNHLSISPNGKYIATGGKDKKLLIWDIL  243 (343)
T ss_dssp             EEEEEEE--C----------CSSCEEEEEECTTSSEEEEEETTCEEEEEESS
T ss_pred             ceeEEEc--C----------ccccceEEEECCCCCEEEEEcCCCeEEEEECC
Confidence            3332222  1          26789999999999999999999999999983

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.97  E-value=4.8e-30  Score=189.34  Aligned_cols=161  Identities=21%  Similarity=0.336  Sum_probs=137.0

Q ss_pred             CCCccEEEEEcCCceeEEee-cCCCceeEEEEcCCCCeEEEEe---------CCCcee--eecccCceeEEEEeeC-CeE
Q 038439            1 MAYGKVKVWCTRQEASVLNI-DMKANICCVKYNPGSSNYIAKY---------QSTAPC--VHGHKKAVSYVKFLSN-DEL   67 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~---------~~~~~~--~~~~~~~i~~~~~~~~-~~l   67 (179)
                      +.|+.|++||.. ++.+..+ .|...|++++|+|++..+++++         ..++.+  +.+|...|.+++|+|+ .+|
T Consensus       404 ~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~l  482 (577)
T 2ymu_A          404 SDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTI  482 (577)
T ss_dssp             ETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEE
T ss_pred             eCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEE
Confidence            368999999954 5555555 4889999999999996665555         233344  7889999999999999 999


Q ss_pred             EEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCC
Q 038439           68 ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAG  147 (179)
Q Consensus        68 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  147 (179)
                      ++++.|+.|++||. +++++..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.           .| 
T Consensus       483 as~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~-----------~h-  548 (577)
T 2ymu_A          483 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-----------GH-  548 (577)
T ss_dssp             EEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE-----------CC-
T ss_pred             EEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc-----------CC-
Confidence            99999999999995 57888999999999999999999999999999999999996 455554433           22 


Q ss_pred             cceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439          148 SYFISAVCWKSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       148 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  176 (179)
                      ...|++++|+||+++|++++.|+.|++||
T Consensus       549 ~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          549 SSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            77899999999999999999999999997

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.97  E-value=1e-29  Score=180.21  Aligned_cols=165  Identities=22%  Similarity=0.341  Sum_probs=137.6

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEEcC-CCCeEEEEe-----------CCCcee--e-------ecccCceeEE
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNP-GSSNYIAKY-----------QSTAPC--V-------HGHKKAVSYV   59 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~-----------~~~~~~--~-------~~~~~~i~~~   59 (179)
                      +.|++|++||+.++++...+.+...+.+++|+| ++ .+++++           ..++.+  +       .+|...|.++
T Consensus       184 s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v  262 (393)
T 1erj_A          184 SGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG-KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV  262 (393)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTC-CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEE
T ss_pred             cCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCC-CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEE
Confidence            469999999999999998888899999999999 66 455554           223332  2       5789999999


Q ss_pred             EEeeC-CeEEEecCCCcEEEEecCCC------------cceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCC
Q 038439           60 KFLSN-DELASASTDSTLRLWDVKEN------------LPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEIS  126 (179)
Q Consensus        60 ~~~~~-~~l~~~~~d~~v~iwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~  126 (179)
                      +|+|+ .+|++++.|+.|++||++..            .+...+.+|...|.+++|+|++.+|++|+.|+.|++||++++
T Consensus       263 ~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~  342 (393)
T 1erj_A          263 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG  342 (393)
T ss_dssp             EECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence            99999 89999999999999999753            344567789999999999999999999999999999999998


Q ss_pred             ccccccccCCCCCCCCcccCCcceEEEEEEcc------CCCeEEEEeCCCcEEEEeec
Q 038439          127 KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKS------DSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~l~~~~~dg~i~iwd~~  178 (179)
                      +++..+..           | ...|.+++|++      ++++|++|+.||.|++|+++
T Consensus       343 ~~~~~l~~-----------h-~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~  388 (393)
T 1erj_A          343 NPLLMLQG-----------H-RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  388 (393)
T ss_dssp             CEEEEEEC-----------C-SSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             eEEEEECC-----------C-CCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence            87755431           2 67899999876      68899999999999999975

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1e-29  Score=176.51  Aligned_cols=174  Identities=16%  Similarity=0.199  Sum_probs=130.5

Q ss_pred             CCCccEEEEEcCC-------ceeEEeec-CCCceeEEEEcCCCCeEEEEe--------C--C----Ccee--eecccCce
Q 038439            1 MAYGKVKVWCTRQ-------EASVLNID-MKANICCVKYNPGSSNYIAKY--------Q--S----TAPC--VHGHKKAV   56 (179)
Q Consensus         1 ~~d~~i~vwd~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~--------~--~----~~~~--~~~~~~~i   56 (179)
                      +.|++|+|||+..       .+++..+. |..+|.+++|+|++..+++++        +  .    .+++  +.+|...|
T Consensus        77 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v  156 (330)
T 2hes_X           77 SFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDV  156 (330)
T ss_dssp             ETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCE
T ss_pred             eCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCce
Confidence            4699999999853       34455554 889999999999996665555        1  1    1233  77899999


Q ss_pred             eEEEEeeC-CeEEEecCCCcEEEEecCCC--cceeeecCCCCCeEEEEEeeC--CCEEEEeccCCcEEEEEcCCCccccc
Q 038439           57 SYVKFLSN-DELASASTDSTLRLWDVKEN--LPVRTFRGHMNEKNFVGLTVN--SEYIACGSESNEVYVYHKEISKPVTW  131 (179)
Q Consensus        57 ~~~~~~~~-~~l~~~~~d~~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~d~~v~vwd~~~~~~~~~  131 (179)
                      .+++|+|+ .+|++++.|++|++||...+  +++..+.+|...|.+++|+|+  +.++++++.|+.|++||++.+.....
T Consensus       157 ~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~  236 (330)
T 2hes_X          157 KHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ  236 (330)
T ss_dssp             EEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc
Confidence            99999999 99999999999999998766  577888999999999999998  67899999999999999976532100


Q ss_pred             cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .....   .......|...|.+++|++++ +|++++.||.|++||+.
T Consensus       237 ~~~~~---~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~  279 (330)
T 2hes_X          237 QEWVC---EAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEV  279 (330)
T ss_dssp             EEEEE---EEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEE
T ss_pred             ceeEE---eeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcC
Confidence            00000   000011127789999999765 79999999999999974

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=1.2e-30  Score=183.61  Aligned_cols=177  Identities=12%  Similarity=0.177  Sum_probs=134.8

Q ss_pred             CCCccEEEEEcCCc--eeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCc---ee--eecccCceeEEEEe
Q 038439            1 MAYGKVKVWCTRQE--ASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTA---PC--VHGHKKAVSYVKFL   62 (179)
Q Consensus         1 ~~d~~i~vwd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~---~~--~~~~~~~i~~~~~~   62 (179)
                      +.|+.|+|||+.++  +.+..+. |...|.+++|+|++..+++++          ..++   +.  +.+|...|.+++|+
T Consensus        30 ~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~  109 (377)
T 3dwl_C           30 TATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWS  109 (377)
T ss_dssp             CSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECC
T ss_pred             cCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEEC
Confidence            47999999999988  6666665 889999999999996666665          2222   23  67899999999999


Q ss_pred             eC-CeEEEecCCCcEEEEecCCCc---ceeeecC-CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCC
Q 038439           63 SN-DELASASTDSTLRLWDVKENL---PVRTFRG-HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSP  137 (179)
Q Consensus        63 ~~-~~l~~~~~d~~v~iwd~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~  137 (179)
                      |+ ..|++++.|+.|++||++.++   ....+.. |...|.+++|+|++++|++++.|+.|++||++..+..........
T Consensus       110 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  189 (377)
T 3dwl_C          110 PNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVW  189 (377)
T ss_dssp             TTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSS
T ss_pred             CCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcccccc
Confidence            99 999999999999999999876   4677777 899999999999999999999999999999975432111000000


Q ss_pred             -------CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          138 -------DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       138 -------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                             ......  .|...|.+++|+|++++|++++.||.|++||+++
T Consensus       190 ~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~  236 (377)
T 3dwl_C          190 GSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA  236 (377)
T ss_dssp             CSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECS
T ss_pred             ccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence                   000001  2377899999999999999999999999999863

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.97  E-value=4.6e-29  Score=173.97  Aligned_cols=163  Identities=16%  Similarity=0.267  Sum_probs=132.5

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeCCCce---------e-----eecccCceeEEEEeeC-
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQSTAP---------C-----VHGHKKAVSYVKFLSN-   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~---------~-----~~~~~~~i~~~~~~~~-   64 (179)
                      +.|++|++||+++++.+..+. |...|.+++|+|++..+++++..+..         .     ..+|...|.+++|+|+ 
T Consensus        95 s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (343)
T 2xzm_R           95 SWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIM  174 (343)
T ss_dssp             ETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCC
T ss_pred             cCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecccc
Confidence            469999999999999888875 88999999999999777666622211         1     1268889999999987 


Q ss_pred             ----------CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCc-cccccc
Q 038439           65 ----------DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK-PVTWHR  133 (179)
Q Consensus        65 ----------~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~-~~~~~~  133 (179)
                                .++++++.|+.|++||. ..+....+..|...|.+++|+|++++|++|+.|+.|++||++... +...+.
T Consensus       175 ~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~  253 (343)
T 2xzm_R          175 KSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD  253 (343)
T ss_dssp             CSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE
T ss_pred             ccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec
Confidence                      37999999999999994 456677888999999999999999999999999999999995433 332222


Q ss_pred             cCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          134 FSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       134 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .             ...|.+++|+|++++++++ .|+.|++||+.
T Consensus       254 ~-------------~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~  284 (343)
T 2xzm_R          254 A-------------GSTINQIAFNPKLQWVAVG-TDQGVKIFNLM  284 (343)
T ss_dssp             C-------------SSCEEEEEECSSSCEEEEE-ESSCEEEEESS
T ss_pred             C-------------CCcEEEEEECCCCCEEEEE-CCCCEEEEEeC
Confidence            1             4569999999999877655 57789999975

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.97  E-value=3e-29  Score=175.12  Aligned_cols=178  Identities=19%  Similarity=0.212  Sum_probs=137.1

Q ss_pred             CCCccEEEEEcCCce--eEEeec-CCCceeEEEEcCCCCeEEEEe----------CCC---cee--eecccCceeEEEEe
Q 038439            1 MAYGKVKVWCTRQEA--SVLNID-MKANICCVKYNPGSSNYIAKY----------QST---APC--VHGHKKAVSYVKFL   62 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~---~~~--~~~~~~~i~~~~~~   62 (179)
                      +.|++|+|||..++.  ++..+. |..+|.+++|+|++..+++++          ..+   +.+  +.+|...|.+++|+
T Consensus        80 s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~  159 (345)
T 3fm0_A           80 SFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH  159 (345)
T ss_dssp             ETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEEC
T ss_pred             ECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEEC
Confidence            469999999988764  455664 889999999999996666555          111   222  67899999999999


Q ss_pred             eC-CeEEEecCCCcEEEEecCCCc--ceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCC
Q 038439           63 SN-DELASASTDSTLRLWDVKENL--PVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDM  139 (179)
Q Consensus        63 ~~-~~l~~~~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~  139 (179)
                      |+ .+|++++.|+.|++||.+.++  +...+.+|...|.+++|+|++++|++++.|+.|++||.................
T Consensus       160 p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~  239 (345)
T 3fm0_A          160 PSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDP  239 (345)
T ss_dssp             SSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---C
T ss_pred             CCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCC
Confidence            99 999999999999999998764  446788999999999999999999999999999999975433221111000000


Q ss_pred             ----CCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          140 ----DDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       140 ----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                          .......|...|.+++|+|++..|++++.|+.|++|+.+
T Consensus       240 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~  282 (345)
T 3fm0_A          240 SWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQED  282 (345)
T ss_dssp             EEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEEC
T ss_pred             ccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeC
Confidence                000112236789999999999999999999999999874

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.97  E-value=5.6e-29  Score=170.42  Aligned_cols=168  Identities=14%  Similarity=0.141  Sum_probs=132.6

Q ss_pred             CCCccEEEEEcCC--ceeEEeec-CCCceeEEEEcCC--CCeEEEEe----------CCCc--ee--eecccCceeEEEE
Q 038439            1 MAYGKVKVWCTRQ--EASVLNID-MKANICCVKYNPG--SSNYIAKY----------QSTA--PC--VHGHKKAVSYVKF   61 (179)
Q Consensus         1 ~~d~~i~vwd~~~--~~~~~~~~-~~~~v~~~~~~~~--~~~~~~~~----------~~~~--~~--~~~~~~~i~~~~~   61 (179)
                      +.|++|+|||+.+  .+++..+. |.++|.+++|+|+  +..+++++          ..++  .+  +.+|...|.+++|
T Consensus        28 s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~  107 (297)
T 2pm7_B           28 SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQW  107 (297)
T ss_dssp             ETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEE
T ss_pred             eCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEe
Confidence            4799999999974  35666665 8899999999864  64444444          2221  22  6679999999999


Q ss_pred             eeC---CeEEEecCCCcEEEEecCCCc--ceeeecCCCCCeEEEEEeeC-------------CCEEEEeccCCcEEEEEc
Q 038439           62 LSN---DELASASTDSTLRLWDVKENL--PVRTFRGHMNEKNFVGLTVN-------------SEYIACGSESNEVYVYHK  123 (179)
Q Consensus        62 ~~~---~~l~~~~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~-------------~~~~~~~~~d~~v~vwd~  123 (179)
                      +|+   .+|++++.|+.|++||+++..  ....+..|...|.+++|+|+             +++|++|+.|+.|++||+
T Consensus       108 ~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~  187 (297)
T 2pm7_B          108 APHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY  187 (297)
T ss_dssp             CCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEE
T ss_pred             CcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEE
Confidence            996   589999999999999998753  24566789999999999997             578999999999999999


Q ss_pred             CCCcccc--ccccCCCCCCCCcccCCcceEEEEEEccCC---CeEEEEeCCCcEEEEeec
Q 038439          124 EISKPVT--WHRFSSPDMDDTDEDAGSYFISAVCWKSDS---PTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       124 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~  178 (179)
                      ++++...  ...+..          |...|.+++|+|++   ++|++++.|++|++||++
T Consensus       188 ~~~~~~~~~~~~l~~----------H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~  237 (297)
T 2pm7_B          188 NSDAQTYVLESTLEG----------HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD  237 (297)
T ss_dssp             ETTTTEEEEEEEECC----------CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             cCCCceEEEEEEecC----------CCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence            8765321  112222          27789999999984   899999999999999985

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.97  E-value=5.1e-29  Score=185.51  Aligned_cols=172  Identities=17%  Similarity=0.189  Sum_probs=137.8

Q ss_pred             ccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-CeEE
Q 038439            4 GKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      ++|++||  .++....+. |...|.+++|+|+++..++++           ...+.+  +.+|...|.+++|+|+ .+|+
T Consensus       129 ~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~la  206 (611)
T 1nr0_A          129 GHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFA  206 (611)
T ss_dssp             EEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             eEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEE
Confidence            4677777  445555554 888999999999987655555           233344  7889999999999999 9999


Q ss_pred             EecCCCcEEEEecCCCcceeeec-------CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCC---
Q 038439           69 SASTDSTLRLWDVKENLPVRTFR-------GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPD---  138 (179)
Q Consensus        69 ~~~~d~~v~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~---  138 (179)
                      +++.|++|++||+.+++.+..+.       +|...|.+++|+|++++|++++.|+.|++||+++++.+..+......   
T Consensus       207 s~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~  286 (611)
T 1nr0_A          207 STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ  286 (611)
T ss_dssp             EEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGC
T ss_pred             EEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccce
Confidence            99999999999999988887774       68999999999999999999999999999999988765544321000   


Q ss_pred             -----------------------------CCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          139 -----------------------------MDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       139 -----------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                                                   ......+ |...|++++|+|++++|++++.|+.|++||++
T Consensus       287 ~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~g-h~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~  354 (611)
T 1nr0_A          287 QLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG-HNKAITALSSSADGKTLFSADAEGHINSWDIS  354 (611)
T ss_dssp             EEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             eEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcC-CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Confidence                                         0001123 37789999999999999999999999999975

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=4.5e-29  Score=188.10  Aligned_cols=165  Identities=19%  Similarity=0.289  Sum_probs=140.7

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeCCCc---------ee------eecccCceeEEEEeeC
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQSTA---------PC------VHGHKKAVSYVKFLSN   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~---------~~------~~~~~~~i~~~~~~~~   64 (179)
                      |.||+|+|||+.+++.+..+. |...|.+++|+|++..+++++..+.         ..      ..+|...|.+++|+|+
T Consensus       449 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  528 (694)
T 3dm0_A          449 SWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN  528 (694)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred             eCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCC
Confidence            469999999999999888875 8899999999999977777662211         11      2468889999999998


Q ss_pred             ---CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCC
Q 038439           65 ---DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDD  141 (179)
Q Consensus        65 ---~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~  141 (179)
                         ..+++++.|+.|++||+++++....+.+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+..       
T Consensus       529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-------  601 (694)
T 3dm0_A          529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-------  601 (694)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-------
T ss_pred             CCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-------
Confidence               4799999999999999999999999999999999999999999999999999999999999887755432       


Q ss_pred             CcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          142 TDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       142 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                            ...+.+++|+|++.++++++ ++.|++||+++
T Consensus       602 ------~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~  632 (694)
T 3dm0_A          602 ------NSVIHALCFSPNRYWLCAAT-EHGIKIWDLES  632 (694)
T ss_dssp             ------SSCEEEEEECSSSSEEEEEE-TTEEEEEETTT
T ss_pred             ------CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCC
Confidence                  45799999999998877765 55699999863

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=1.3e-29  Score=181.83  Aligned_cols=168  Identities=14%  Similarity=0.204  Sum_probs=131.7

Q ss_pred             CCCccEEEEEcCCceeEEee---cCCCceeEEEEcCC-CCeEEEEeCCC---------cee--e---ecccCceeEEEEe
Q 038439            1 MAYGKVKVWCTRQEASVLNI---DMKANICCVKYNPG-SSNYIAKYQST---------APC--V---HGHKKAVSYVKFL   62 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~---~~~~~v~~~~~~~~-~~~~~~~~~~~---------~~~--~---~~~~~~i~~~~~~   62 (179)
                      +.||+|+|||+.+++....+   .|.+.|++++|+|. +..+++++..+         ..+  +   ..+...+.+++|+
T Consensus       139 s~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  218 (435)
T 4e54_B          139 SKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVS  218 (435)
T ss_dssp             ETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEE
T ss_pred             eCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEEC
Confidence            47999999999876543333   48899999999984 54455554211         111  1   2234457889999


Q ss_pred             eC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCC-EEEEeccCCcEEEEEcCCCccccccccCCCCCC
Q 038439           63 SN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE-YIACGSESNEVYVYHKEISKPVTWHRFSSPDMD  140 (179)
Q Consensus        63 ~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~  140 (179)
                      |+ .+|++|+.|+.|++||++. +.+..+..|...|.+++|+|++. ++++|+.|+.|++||+++.+....+...     
T Consensus       219 ~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~-----  292 (435)
T 4e54_B          219 ASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS-----  292 (435)
T ss_dssp             TTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBC-----
T ss_pred             CCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEe-----
Confidence            99 9999999999999999874 56778889999999999999876 6789999999999999987654433211     


Q ss_pred             CCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          141 DTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       141 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                          ..|...|++++|+|++++|++++.||.|++||++
T Consensus       293 ----~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~  326 (435)
T 4e54_B          293 ----LPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS  326 (435)
T ss_dssp             ----CBCSSCEEECCBCTTSSEEEEEESSSCEEEEESS
T ss_pred             ----eeccccccceeECCCCCeeEEEcCCCEEEEEECC
Confidence                1127789999999999999999999999999985

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=8.4e-29  Score=174.69  Aligned_cols=164  Identities=15%  Similarity=0.129  Sum_probs=135.1

Q ss_pred             CCCccEEEEEcCCceeEEeec---CCCceeEEEEcCCCCeEEEEe-CC---------Ccee--e---ecccCceeEEEEe
Q 038439            1 MAYGKVKVWCTRQEASVLNID---MKANICCVKYNPGSSNYIAKY-QS---------TAPC--V---HGHKKAVSYVKFL   62 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~-~~---------~~~~--~---~~~~~~i~~~~~~   62 (179)
                      +.||+|+|||+.+++....+.   |...|.+++|+|++..+++++ ..         +..+  +   ..|...|.+++|+
T Consensus        93 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~  172 (383)
T 3ei3_B           93 SKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVS  172 (383)
T ss_dssp             EBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEE
T ss_pred             cCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEEC
Confidence            368999999999887776664   889999999999433455554 11         1222  3   3345789999999


Q ss_pred             eC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCC-EEEEeccCCcEEEEEcCCCc----cccccccCC
Q 038439           63 SN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE-YIACGSESNEVYVYHKEISK----PVTWHRFSS  136 (179)
Q Consensus        63 ~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~v~vwd~~~~~----~~~~~~~~~  136 (179)
                      |+ .+|++++.|+.|++||+ +++.+..+..|...|.+++|+|+++ ++++++.|+.|++||+++.+    .+....   
T Consensus       173 ~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---  248 (383)
T 3ei3_B          173 VSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP---  248 (383)
T ss_dssp             TTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE---
T ss_pred             CCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec---
Confidence            99 99999999999999999 4678888999999999999999998 89999999999999999843    332221   


Q ss_pred             CCCCCCcccCCcceEEEEEEcc-CCCeEEEEeCCCcEEEEeec
Q 038439          137 PDMDDTDEDAGSYFISAVCWKS-DSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       137 ~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~  178 (179)
                                |...|.+++|+| ++++|++++.|+.|++||++
T Consensus       249 ----------~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~  281 (383)
T 3ei3_B          249 ----------HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY  281 (383)
T ss_dssp             ----------CSSCEEEEEECTTTSCEEEEEESSSEEEEEETT
T ss_pred             ----------CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECC
Confidence                      167899999999 99999999999999999985

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.97  E-value=1.6e-28  Score=169.00  Aligned_cols=152  Identities=24%  Similarity=0.323  Sum_probs=131.9

Q ss_pred             eEEee-cCCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEec
Q 038439           16 SVLNI-DMKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDV   81 (179)
Q Consensus        16 ~~~~~-~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~   81 (179)
                      ....+ .|..+|++++|+|+++.+++++          ..++..  +.+|...|.+++|+|+ ++|++++.|+.|++||+
T Consensus        15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~   94 (312)
T 4ery_A           15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV   94 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence            34444 3889999999999996666655          233333  7789999999999999 99999999999999999


Q ss_pred             CCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCC
Q 038439           82 KENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSP  161 (179)
Q Consensus        82 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  161 (179)
                      ++++.+..+..|...|.+++|+|+++++++|+.|+.|++||+++++.+..+..            |...|.+++|+|+++
T Consensus        95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~------------~~~~v~~~~~~~~~~  162 (312)
T 4ery_A           95 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA------------HSDPVSAVHFNRDGS  162 (312)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC------------CSSCEEEEEECTTSS
T ss_pred             CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC------------CCCcEEEEEEcCCCC
Confidence            99999999999999999999999999999999999999999999887655432            166899999999999


Q ss_pred             eEEEEeCCCcEEEEeecC
Q 038439          162 TMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       162 ~l~~~~~dg~i~iwd~~~  179 (179)
                      +|++++.||.|++||+++
T Consensus       163 ~l~~~~~d~~i~~wd~~~  180 (312)
T 4ery_A          163 LIVSSSYDGLCRIWDTAS  180 (312)
T ss_dssp             EEEEEETTSCEEEEETTT
T ss_pred             EEEEEeCCCcEEEEECCC
Confidence            999999999999999863

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.97  E-value=3e-29  Score=175.33  Aligned_cols=170  Identities=13%  Similarity=0.228  Sum_probs=138.1

Q ss_pred             CCCccEEEEEcCCceeEEee----cCCCceeEEEEcCCCCeEEEEeCCCcee------------e---------------
Q 038439            1 MAYGKVKVWCTRQEASVLNI----DMKANICCVKYNPGSSNYIAKYQSTAPC------------V---------------   49 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~------------~---------------   49 (179)
                      +.||+|++||+.+++.+..+    .|...|.+++|+|++..+++++..+...            +               
T Consensus       135 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  214 (366)
T 3k26_A          135 SKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPF  214 (366)
T ss_dssp             ETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCC
T ss_pred             eCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccc
Confidence            36899999999999988887    4889999999999997666665221111            1               


Q ss_pred             -------------ecccCceeEEEEeeCCeEEEecCCCcEEEEecCCCcc--------------eeeecCCCCCeEEEEE
Q 038439           50 -------------HGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLP--------------VRTFRGHMNEKNFVGL  102 (179)
Q Consensus        50 -------------~~~~~~i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~--------------~~~~~~~~~~v~~~~~  102 (179)
                                   ..|...|.+++|+ ..++++++.|+.|++||+++.+.              +..+..|...+.+++|
T Consensus       215 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  293 (366)
T 3k26_A          215 ISQKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRF  293 (366)
T ss_dssp             CCEEECCCSEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCC
T ss_pred             cceeeccCccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEE
Confidence                         1288999999998 57999999999999999987644              6677788889999999


Q ss_pred             eeC--CCEEEEeccCCcEEEEEcCCCcccccc--ccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          103 TVN--SEYIACGSESNEVYVYHKEISKPVTWH--RFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       103 ~~~--~~~~~~~~~d~~v~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      +|+  +++|++++.||.|++||++++++....  .+..+        .+...|.+++|+|++++|++++.||.|++||+.
T Consensus       294 s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          294 SMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHH--------KCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             EECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCT--------TCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             cCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEccc--------ccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            999  999999999999999999998765411  12111        015789999999999999999999999999986


Q ss_pred             C
Q 038439          179 A  179 (179)
Q Consensus       179 ~  179 (179)
                      +
T Consensus       366 ~  366 (366)
T 3k26_A          366 R  366 (366)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=3.7e-29  Score=177.67  Aligned_cols=168  Identities=17%  Similarity=0.175  Sum_probs=138.0

Q ss_pred             CCCccEEEEEcCCcee----EEee-cCCCceeEEEEcC-CCCeEEEEe----------CCC-------cee--eecccCc
Q 038439            1 MAYGKVKVWCTRQEAS----VLNI-DMKANICCVKYNP-GSSNYIAKY----------QST-------APC--VHGHKKA   55 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~----~~~~-~~~~~v~~~~~~~-~~~~~~~~~----------~~~-------~~~--~~~~~~~   55 (179)
                      +.||.|+||++.+...    +..+ .|.++|++++|+| ++..+++++          ..+       +++  +.+|...
T Consensus        54 ~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~  133 (402)
T 2aq5_A           54 SGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR  133 (402)
T ss_dssp             SSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSC
T ss_pred             cCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCe
Confidence            4689999999865432    2233 3889999999999 775444444          222       333  7889999


Q ss_pred             eeEEEEeeC--CeEEEecCCCcEEEEecCCCcceeee--cCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccc
Q 038439           56 VSYVKFLSN--DELASASTDSTLRLWDVKENLPVRTF--RGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTW  131 (179)
Q Consensus        56 i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~  131 (179)
                      |.+++|+|+  ..|++++.|+.|++||+++++.+..+  ..|...|.+++|+|++++|++++.|+.|++||+++++.+..
T Consensus       134 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  213 (402)
T 2aq5_A          134 VGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAE  213 (402)
T ss_dssp             EEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEE
T ss_pred             EEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeee
Confidence            999999999  58999999999999999999999888  78999999999999999999999999999999999887765


Q ss_pred             cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEE---eCCCcEEEEeec
Q 038439          132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTA---NSQGTIKVLVLA  178 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~~dg~i~iwd~~  178 (179)
                      +...          |....+..+.|+|++++|++|   +.|+.|++||++
T Consensus       214 ~~~~----------~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~  253 (402)
T 2aq5_A          214 KDRP----------HEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTK  253 (402)
T ss_dssp             EECS----------SCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETT
T ss_pred             eccC----------CCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCc
Confidence            5211          113348889999999999999   789999999985

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=1.9e-29  Score=174.12  Aligned_cols=167  Identities=13%  Similarity=0.180  Sum_probs=131.1

Q ss_pred             CCCccEEEEEcCCce--eEEeec-CCCceeEEEEcCC--CCeEEEEe-CC----------C-ce--e--eecccCceeEE
Q 038439            1 MAYGKVKVWCTRQEA--SVLNID-MKANICCVKYNPG--SSNYIAKY-QS----------T-AP--C--VHGHKKAVSYV   59 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~~~~~~-~~----------~-~~--~--~~~~~~~i~~~   59 (179)
                      |.|++|++||+++++  ....+. |...|.+++|+|+  + .+++++ ..          . ..  .  +.+|...|.++
T Consensus        78 s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g-~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~  156 (316)
T 3bg1_A           78 SYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYG-LILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAV  156 (316)
T ss_dssp             ETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTC-SCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCC
T ss_pred             ECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCC-cEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceE
Confidence            469999999998874  444554 8889999999998  5 445554 11          1 11  1  56788899999


Q ss_pred             EEeeC------------------CeEEEecCCCcEEEEecCCC---cceeeecCCCCCeEEEEEeeCC----CEEEEecc
Q 038439           60 KFLSN------------------DELASASTDSTLRLWDVKEN---LPVRTFRGHMNEKNFVGLTVNS----EYIACGSE  114 (179)
Q Consensus        60 ~~~~~------------------~~l~~~~~d~~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~  114 (179)
                      .|+|+                  .+|++++.|+.|++||++..   +++..+.+|...|.+++|+|++    .+|++++.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~  236 (316)
T 3bg1_A          157 SWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQ  236 (316)
T ss_dssp             EECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEET
T ss_pred             EEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcC
Confidence            99986                  37999999999999999754   4567788999999999999986    78999999


Q ss_pred             CCcEEEEEcCCCcc--ccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          115 SNEVYVYHKEISKP--VTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       115 d~~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      |+.|++||+++...  .....+.         .| ...|++++|+|++++|++++.|+.|++|+..
T Consensus       237 D~~v~iw~~~~~~~~~~~~~~~~---------~~-~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          237 DGRVFIWTCDDASSNTWSPKLLH---------KF-NDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             TCEEEEEECSSTTCCCCBCCEEE---------EC-SSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             CCeEEEEEccCccccchhhhhhh---------cC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            99999999986321  0000111         11 6689999999999999999999999999974

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.97  E-value=1.4e-28  Score=170.27  Aligned_cols=163  Identities=17%  Similarity=0.260  Sum_probs=140.5

Q ss_pred             CccEEEEEcCCceeE---Eee---cCCCceeEEEEcCCCCeEEEEe----------CCCc--ee--eecccCceeEEEEe
Q 038439            3 YGKVKVWCTRQEASV---LNI---DMKANICCVKYNPGSSNYIAKY----------QSTA--PC--VHGHKKAVSYVKFL   62 (179)
Q Consensus         3 d~~i~vwd~~~~~~~---~~~---~~~~~v~~~~~~~~~~~~~~~~----------~~~~--~~--~~~~~~~i~~~~~~   62 (179)
                      ||.|++||+.+++..   ..+   .+...|.+++|+|++..+++++          ..++  ..  +..|...|.+++|+
T Consensus        71 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~  150 (337)
T 1gxr_A           71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS  150 (337)
T ss_dssp             BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC
T ss_pred             CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEEC
Confidence            899999999876532   222   4788999999999996666655          2222  22  77888999999999


Q ss_pred             eC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCC
Q 038439           63 SN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDD  141 (179)
Q Consensus        63 ~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~  141 (179)
                      |+ .++++++.|+.|++||+++++.+..+..|...+.+++|+|+++++++++.|+.|++||+++++.+.....       
T Consensus       151 ~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-------  223 (337)
T 1gxr_A          151 PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF-------  223 (337)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-------
T ss_pred             CCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC-------
Confidence            99 8999999999999999999999999999999999999999999999999999999999999887766543       


Q ss_pred             CcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          142 TDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       142 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                            ...+.+++|+|+++++++++.++.|++||++
T Consensus       224 ------~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~  254 (337)
T 1gxr_A          224 ------TSQIFSLGYCPTGEWLAVGMESSNVEVLHVN  254 (337)
T ss_dssp             ------SSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ------CCceEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence                  5679999999999999999999999999986

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.7e-28  Score=172.27  Aligned_cols=171  Identities=12%  Similarity=0.235  Sum_probs=137.5

Q ss_pred             CCCccEEEEEcCCce--eEEeec-CCCceeEEEEcCC--CCeEEEEe----------CCC---cee-eecccCceeEEEE
Q 038439            1 MAYGKVKVWCTRQEA--SVLNID-MKANICCVKYNPG--SSNYIAKY----------QST---APC-VHGHKKAVSYVKF   61 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~~~~~~----------~~~---~~~-~~~~~~~i~~~~~   61 (179)
                      +.||.|++||+.+++  .+..+. |...|.+++|+|+  +..+++++          ...   ... +..|...|.+++|
T Consensus        76 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~  155 (379)
T 3jrp_A           76 SYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW  155 (379)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEE
T ss_pred             ccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEE
Confidence            468999999999886  555554 8889999999999  75555555          112   122 6789999999999


Q ss_pred             ee-------------C-CeEEEecCCCcEEEEecCCCc----ceeeecCCCCCeEEEEEeeC---CCEEEEeccCCcEEE
Q 038439           62 LS-------------N-DELASASTDSTLRLWDVKENL----PVRTFRGHMNEKNFVGLTVN---SEYIACGSESNEVYV  120 (179)
Q Consensus        62 ~~-------------~-~~l~~~~~d~~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~d~~v~v  120 (179)
                      +|             + ..+++++.|+.|++||++.++    ....+..|...|.+++|+|+   +.+|++++.|+.|++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~i  235 (379)
T 3jrp_A          156 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII  235 (379)
T ss_dssp             CCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred             cCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEE
Confidence            99             6 899999999999999998764    34567789999999999999   899999999999999


Q ss_pred             EEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          121 YHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       121 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ||+++++..........       ..+...|.+++|+|++++|++++.||.|++|+++
T Consensus       236 wd~~~~~~~~~~~~~~~-------~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          236 WTQDNEQGPWKKTLLKE-------EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             EEESSTTSCCEEEESSS-------SCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred             EeCCCCCccceeeeecc-------ccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence            99998753221111110       1126789999999999999999999999999985

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=1.3e-28  Score=185.56  Aligned_cols=167  Identities=18%  Similarity=0.209  Sum_probs=136.4

Q ss_pred             CCCccEEEEEcCCc-----eeEEee-cCCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEe
Q 038439            1 MAYGKVKVWCTRQE-----ASVLNI-DMKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFL   62 (179)
Q Consensus         1 ~~d~~i~vwd~~~~-----~~~~~~-~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~   62 (179)
                      |.|++|+|||+.+.     .....+ .|...|.+++|+|++..+++++          ..++.+  +.+|...|.+++|+
T Consensus       402 s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s  481 (694)
T 3dm0_A          402 SRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFS  481 (694)
T ss_dssp             ETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred             eCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEe
Confidence            47999999998753     233444 4889999999999996666655          334444  78999999999999


Q ss_pred             eC-CeEEEecCCCcEEEEecCCCcceeee---cCCCCCeEEEEEeeCC--CEEEEeccCCcEEEEEcCCCccccccccCC
Q 038439           63 SN-DELASASTDSTLRLWDVKENLPVRTF---RGHMNEKNFVGLTVNS--EYIACGSESNEVYVYHKEISKPVTWHRFSS  136 (179)
Q Consensus        63 ~~-~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~--~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~  136 (179)
                      |+ ..|++++.|++|++||..........   ..|...|.+++|+|++  ..+++++.|+.|++||+++++....+.   
T Consensus       482 ~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~---  558 (694)
T 3dm0_A          482 LDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA---  558 (694)
T ss_dssp             TTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC---
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc---
Confidence            99 99999999999999998754332222   3578889999999986  579999999999999999887665432   


Q ss_pred             CCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       137 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                              . |...|++++|+|++++|++++.||.|++||+++
T Consensus       559 --------~-h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~  592 (694)
T 3dm0_A          559 --------G-HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE  592 (694)
T ss_dssp             --------C-CSSCEEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred             --------C-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence                    1 277899999999999999999999999999863

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=2.3e-28  Score=169.44  Aligned_cols=178  Identities=15%  Similarity=0.187  Sum_probs=132.3

Q ss_pred             CCCccEEEEEcCCc----eeEEeec-CCCceeEEEEcC--CCCeEEEEe----------CCC---------cee--eecc
Q 038439            1 MAYGKVKVWCTRQE----ASVLNID-MKANICCVKYNP--GSSNYIAKY----------QST---------APC--VHGH   52 (179)
Q Consensus         1 ~~d~~i~vwd~~~~----~~~~~~~-~~~~v~~~~~~~--~~~~~~~~~----------~~~---------~~~--~~~~   52 (179)
                      +.||+|++||+.++    +....+. |..+|.+++|+|  ++..+++++          ..+         +++  +..|
T Consensus        30 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  109 (351)
T 3f3f_A           30 SSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDS  109 (351)
T ss_dssp             ETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCC
T ss_pred             eCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeeccc
Confidence            46899999999876    3445554 889999999999  475555555          222         233  7789


Q ss_pred             cCceeEEEEeeC---CeEEEecCCCcEEEEecCCCcc-------------------------------------------
Q 038439           53 KKAVSYVKFLSN---DELASASTDSTLRLWDVKENLP-------------------------------------------   86 (179)
Q Consensus        53 ~~~i~~~~~~~~---~~l~~~~~d~~v~iwd~~~~~~-------------------------------------------   86 (179)
                      ...|.+++|+|+   .++++++.|+.|++||+++++.                                           
T Consensus       110 ~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~  189 (351)
T 3f3f_A          110 KGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA  189 (351)
T ss_dssp             SSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE
T ss_pred             CCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEec
Confidence            999999999997   5799999999999999875431                                           


Q ss_pred             -----------------eeeecCCCCCeEEEEEeeCC----CEEEEeccCCcEEEEEcCCCccccccccCCC--------
Q 038439           87 -----------------VRTFRGHMNEKNFVGLTVNS----EYIACGSESNEVYVYHKEISKPVTWHRFSSP--------  137 (179)
Q Consensus        87 -----------------~~~~~~~~~~v~~~~~~~~~----~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~--------  137 (179)
                                       +..+..|...|.+++|+|++    ++|++++.|+.|++||++++...........        
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  269 (351)
T 3f3f_A          190 LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNS  269 (351)
T ss_dssp             TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------
T ss_pred             CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCC
Confidence                             34455688899999999998    8999999999999999987532211100000        


Q ss_pred             ---------------------------CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          138 ---------------------------DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       138 ---------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                                                 ........ |...|++++|+|++++|++++.||.|++||+++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  337 (351)
T 3f3f_A          270 ADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD-HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATY  337 (351)
T ss_dssp             ---------------------CCSEEEEEEEEECT-TSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             cccccccccccccccceeeeecccccccEEEEEec-ccccEEEEEEcCCCCEEEEecCCCcEEEEecCc
Confidence                                       00000112 377899999999999999999999999999863

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.97  E-value=4.6e-28  Score=167.63  Aligned_cols=164  Identities=10%  Similarity=0.122  Sum_probs=141.4

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee-eecccCceeEEEEeeC-CeE
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC-VHGHKKAVSYVKFLSN-DEL   67 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~i~~~~~~~~-~~l   67 (179)
                      +.||.|++||+.+++.+..+. |...|.+++|+|++..+++++          +.++.+ ...+...+.+++|+|+ ..+
T Consensus       160 ~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l  239 (337)
T 1gxr_A          160 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWL  239 (337)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEE
T ss_pred             eCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEE
Confidence            368999999999999888886 788999999999997666665          333444 4457788999999999 999


Q ss_pred             EEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCC
Q 038439           68 ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAG  147 (179)
Q Consensus        68 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  147 (179)
                      ++++.++.|++||+++++. ..+..|...+.+++|+|+++++++++.|+.|++||+++++.+.....             
T Consensus       240 ~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~-------------  305 (337)
T 1gxr_A          240 AVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-------------  305 (337)
T ss_dssp             EEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-------------
T ss_pred             EEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecC-------------
Confidence            9999999999999998764 46677899999999999999999999999999999999887644322             


Q ss_pred             cceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          148 SYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       148 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ...+.+++|+|++++|++++.||.|++|++.
T Consensus       306 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          306 SSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             CCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence            6679999999999999999999999999974

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=3.8e-28  Score=166.99  Aligned_cols=165  Identities=13%  Similarity=0.174  Sum_probs=127.0

Q ss_pred             CCccEEEEEcCCceeEEeec---CCCceeEEEEcCCCCeEEEEe------------------------------------
Q 038439            2 AYGKVKVWCTRQEASVLNID---MKANICCVKYNPGSSNYIAKY------------------------------------   42 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~------------------------------------   42 (179)
                      .|++|+|||+.+++++..+.   |...|++++|+|+++.+++++                                    
T Consensus        43 ~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l  122 (318)
T 4ggc_A           43 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYIL  122 (318)
T ss_dssp             ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEE
T ss_pred             eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEE
Confidence            48999999999999888774   667899999999996555554                                    


Q ss_pred             ---------------CCCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcce----eee----------
Q 038439           43 ---------------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPV----RTF----------   90 (179)
Q Consensus        43 ---------------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~----~~~----------   90 (179)
                                     .....+  +.+|...+..+.+.++ .++++++.|+.|++||+++++..    ...          
T Consensus       123 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~  202 (318)
T 4ggc_A          123 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV  202 (318)
T ss_dssp             EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEE
T ss_pred             EEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEE
Confidence                           011112  5667788888999988 89999999999999998764211    000          


Q ss_pred             ----------------------------------cCCCCCeEEEEEeeCCCEEEEe--ccCCcEEEEEcCCCcccccccc
Q 038439           91 ----------------------------------RGHMNEKNFVGLTVNSEYIACG--SESNEVYVYHKEISKPVTWHRF  134 (179)
Q Consensus        91 ----------------------------------~~~~~~v~~~~~~~~~~~~~~~--~~d~~v~vwd~~~~~~~~~~~~  134 (179)
                                                        ..+...+..+.|+|++..++++  +.|+.|++||+++++++..+. 
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-  281 (318)
T 4ggc_A          203 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-  281 (318)
T ss_dssp             EECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-
T ss_pred             EecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-
Confidence                                              0123345667788888776654  478999999999988876543 


Q ss_pred             CCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          135 SSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                       .         | ...|++++|+|++++|++|+.||+|+|||+.
T Consensus       282 -g---------H-~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          282 -G---------H-TSRVLSLTMSPDGATVASAAADETLRLWRCF  314 (318)
T ss_dssp             -C---------C-SSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             -C---------C-CCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence             2         2 7789999999999999999999999999985

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=3.5e-28  Score=173.70  Aligned_cols=117  Identities=15%  Similarity=0.239  Sum_probs=97.4

Q ss_pred             eecccCceeEEEEeeC--CeEEE--ecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEec--cCCcEEEEE
Q 038439           49 VHGHKKAVSYVKFLSN--DELAS--ASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGS--ESNEVYVYH  122 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~--~~l~~--~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~d~~v~vwd  122 (179)
                      ...|...|.+++|+|.  ..+++  |+.|+.|++||+.+++++..+..+ ..+.++.|+|++..+++++  .|+.|++||
T Consensus       272 ~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd  350 (420)
T 4gga_A          272 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWK  350 (420)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEE
T ss_pred             ecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEE
Confidence            4456778889999988  55554  467999999999999888888754 5688899999999887654  799999999


Q ss_pred             cCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          123 KEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      +++++++..+.  .|          ...|++++|+|+|++|++|+.|++|++||+.
T Consensus       351 ~~~~~~v~~l~--gH----------~~~V~~l~~spdg~~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          351 YPTMAKVAELK--GH----------TSRVLSLTMSPDGATVASAAADETLRLWRCF  394 (420)
T ss_dssp             TTTCCEEEEEC--CC----------SSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             CCCCcEEEEEc--CC----------CCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            99998876643  22          7789999999999999999999999999974

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-28  Score=175.48  Aligned_cols=166  Identities=14%  Similarity=0.188  Sum_probs=142.9

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeCCeE
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSNDEL   67 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~~~l   67 (179)
                      +.||.|++||+.+++.+..+. |..+|.+++|+|++..+++++          ..++.+  +..|...|.++.|+|++.+
T Consensus       224 ~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l  303 (425)
T 1r5m_A          224 GPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKV  303 (425)
T ss_dssp             CGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTTEE
T ss_pred             cCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCCEE
Confidence            468999999999988887775 788999999999997666655          233333  6779999999999999999


Q ss_pred             EEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCc--------------------
Q 038439           68 ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK--------------------  127 (179)
Q Consensus        68 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~--------------------  127 (179)
                      ++++.|+.|++||+++++.+..+..|...+.+++|+|+++++++++.|+.|++||+++++                    
T Consensus       304 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (425)
T 1r5m_A          304 ISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIP  383 (425)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECC
T ss_pred             EEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccch
Confidence            999999999999999999999999899999999999999999999999999999998876                    


Q ss_pred             cccccccCCCCCCCCcccCCcc--eEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          128 PVTWHRFSSPDMDDTDEDAGSY--FISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .+..+.           .+ ..  .|.+++|+|++++|++++.||.|++||++
T Consensus       384 ~~~~~~-----------~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          384 LYASYQ-----------SS-QDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEEEEC-----------CT-TCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             hhhhhc-----------Cc-ccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            332222           12 33  89999999999999999999999999986

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=1.1e-28  Score=175.26  Aligned_cols=168  Identities=12%  Similarity=0.220  Sum_probs=137.7

Q ss_pred             CCCccEEEEEcCCc-------eeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee--e--ecccCcee
Q 038439            1 MAYGKVKVWCTRQE-------ASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC--V--HGHKKAVS   57 (179)
Q Consensus         1 ~~d~~i~vwd~~~~-------~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~--~~~~~~i~   57 (179)
                      +.||+|+|||+.++       +++..+. |...|.+++|+|++..+++++           ..++.+  +  .+|...|.
T Consensus       101 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  180 (402)
T 2aq5_A          101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIY  180 (402)
T ss_dssp             ETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEE
T ss_pred             eCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceE
Confidence            46999999999987       4555664 889999999999985455554           344444  5  67999999


Q ss_pred             EEEEeeC-CeEEEecCCCcEEEEecCCCcceeee-cCCCCC-eEEEEEeeCCCEEEEe---ccCCcEEEEEcCCCcc-cc
Q 038439           58 YVKFLSN-DELASASTDSTLRLWDVKENLPVRTF-RGHMNE-KNFVGLTVNSEYIACG---SESNEVYVYHKEISKP-VT  130 (179)
Q Consensus        58 ~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~~~~~---~~d~~v~vwd~~~~~~-~~  130 (179)
                      +++|+|+ .+|++++.|+.|++||+++++.+..+ ..|... +..+.|+|+++++++|   +.|+.|++||+++++. +.
T Consensus       181 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~  260 (402)
T 2aq5_A          181 SVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLS  260 (402)
T ss_dssp             EEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSE
T ss_pred             EEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCce
Confidence            9999999 99999999999999999999988888 677765 8899999999999999   7899999999998665 32


Q ss_pred             ccccCCCCCCCCcccCCcceEEEEEEccCCCeEEE-EeCCCcEEEEeecC
Q 038439          131 WHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLT-ANSQGTIKVLVLAA  179 (179)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~iwd~~~  179 (179)
                      .....           +...+..++|+|++++|++ ++.||.|++||+++
T Consensus       261 ~~~~~-----------~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~  299 (402)
T 2aq5_A          261 LQELD-----------TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS  299 (402)
T ss_dssp             EEECC-----------CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECS
T ss_pred             EEecc-----------CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecC
Confidence            22221           1556899999999999965 55799999999863

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=7.9e-29  Score=175.27  Aligned_cols=177  Identities=10%  Similarity=0.094  Sum_probs=143.5

Q ss_pred             CCCccEEEEEcCC------ceeEE-----eec--------CCCceeEEEEcCCCCeEEEEe----------CCCcee--e
Q 038439            1 MAYGKVKVWCTRQ------EASVL-----NID--------MKANICCVKYNPGSSNYIAKY----------QSTAPC--V   49 (179)
Q Consensus         1 ~~d~~i~vwd~~~------~~~~~-----~~~--------~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~   49 (179)
                      +.||.|++||+.+      ++.+.     .+.        +...|.+++|+|++ .+++++          +.++++  +
T Consensus       145 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~  223 (397)
T 1sq9_A          145 DVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNF  223 (397)
T ss_dssp             ETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             eCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEE
Confidence            3689999999988      65554     442        67889999999999 555554          344555  6


Q ss_pred             ec---c---cCceeEEEEeeC-CeEEEecCC---CcEEEEecCCCcceeeecC-------------CCCCeEEEEEeeCC
Q 038439           50 HG---H---KKAVSYVKFLSN-DELASASTD---STLRLWDVKENLPVRTFRG-------------HMNEKNFVGLTVNS  106 (179)
Q Consensus        50 ~~---~---~~~i~~~~~~~~-~~l~~~~~d---~~v~iwd~~~~~~~~~~~~-------------~~~~v~~~~~~~~~  106 (179)
                      ..   |   ...|.+++|+|+ .+|++++.|   +.|++||+++++.+..+..             |...|.+++|+|++
T Consensus       224 ~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  303 (397)
T 1sq9_A          224 ESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG  303 (397)
T ss_dssp             ECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS
T ss_pred             eccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCC
Confidence            67   8   999999999999 999999999   9999999999999999988             89999999999999


Q ss_pred             CEEEEeccCCcEEEEEcCCCccccccccC----CC------CCCCCcccCCcceEEEEEEccCC----------CeEEEE
Q 038439          107 EYIACGSESNEVYVYHKEISKPVTWHRFS----SP------DMDDTDEDAGSYFISAVCWKSDS----------PTMLTA  166 (179)
Q Consensus       107 ~~~~~~~~d~~v~vwd~~~~~~~~~~~~~----~~------~~~~~~~~~~~~~i~~~~~~~~~----------~~l~~~  166 (179)
                      ++|++++.|+.|++||+++++.+..+...    .+      ........ |...|.+++|+|++          ++|+++
T Consensus       304 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~  382 (397)
T 1sq9_A          304 ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSL-AEPGVFDVKFLKKGWRSGMGADLNESLCCV  382 (397)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBC-SSCCEEEEEEECTTTSBSTTCTTSCEEEEE
T ss_pred             CEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccc-cCCceeEEEeccccccccccccccceEEEe
Confidence            99999999999999999998887666521    10      00000011 26789999999998          799999


Q ss_pred             eCCCcEEEEeecC
Q 038439          167 NSQGTIKVLVLAA  179 (179)
Q Consensus       167 ~~dg~i~iwd~~~  179 (179)
                      +.||.|++||+++
T Consensus       383 ~~dg~i~iw~~~~  395 (397)
T 1sq9_A          383 CLDRSIRWFREAG  395 (397)
T ss_dssp             ETTTEEEEEEEEC
T ss_pred             cCCCcEEEEEcCC
Confidence            9999999999864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.97  E-value=4.2e-28  Score=179.03  Aligned_cols=162  Identities=20%  Similarity=0.314  Sum_probs=137.2

Q ss_pred             CCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe---------CCCcee--eecccCceeEEEEeeC-CeEE
Q 038439            2 AYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY---------QSTAPC--VHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~---------~~~~~~--~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      .||.|++||. +++.+..+. |..+|.+++|+|++..+++++         ..++.+  +.+|...|.+++|+|+ .+|+
T Consensus       364 ~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~  442 (577)
T 2ymu_A          364 DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIA  442 (577)
T ss_dssp             TTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             CCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEE
Confidence            6899999995 455666664 889999999999997666655         223344  7889999999999999 9999


Q ss_pred             EecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCc
Q 038439           69 SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGS  148 (179)
Q Consensus        69 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (179)
                      +++.|+.|++||. +++.+..+..|...|.+++|+|++++|++++.|+.|++||. +++.+..+..            |.
T Consensus       443 ~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~------------h~  508 (577)
T 2ymu_A          443 SASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG------------HS  508 (577)
T ss_dssp             EEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEEC------------CS
T ss_pred             EEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeC------------CC
Confidence            9999999999996 46778888899999999999999999999999999999995 4555544331            26


Q ss_pred             ceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          149 YFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       149 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ..|++++|+|++++|++++.||.|++||..
T Consensus       509 ~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          509 SSVRGVAFSPDGQTIASASDDKTVKLWNRN  538 (577)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred             CCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence            789999999999999999999999999953

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.97  E-value=1.3e-28  Score=175.44  Aligned_cols=178  Identities=13%  Similarity=0.144  Sum_probs=140.9

Q ss_pred             CCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-CeEE
Q 038439            2 AYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      .||.|++||+.+++....+.....+....|+|++..+++++          ..++.+  +.+|...|.+++|+|+ .+|+
T Consensus        76 ~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  155 (420)
T 3vl1_A           76 LDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALI  155 (420)
T ss_dssp             ETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEE
T ss_pred             cCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEE
Confidence            58999999999888776666556666668899996555554          333444  5689999999999999 8999


Q ss_pred             EecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCC---------
Q 038439           69 SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDM---------  139 (179)
Q Consensus        69 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------  139 (179)
                      +++.|+.|++||+++++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+.......         
T Consensus       156 s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  235 (420)
T 3vl1_A          156 SSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALF  235 (420)
T ss_dssp             EEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEE
T ss_pred             EEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999988776654321100         


Q ss_pred             ---CCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          140 ---DDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       140 ---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                         .......+...+.+++|+|++++|++++.||.|++||+++
T Consensus       236 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~  278 (420)
T 3vl1_A          236 VGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFS  278 (420)
T ss_dssp             ECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTT
T ss_pred             cCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCC
Confidence               0000000124455566789999999999999999999863

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=3.3e-28  Score=172.82  Aligned_cols=168  Identities=15%  Similarity=0.181  Sum_probs=138.5

Q ss_pred             CCCccEEEEEcC-CceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC--
Q 038439            1 MAYGKVKVWCTR-QEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN--   64 (179)
Q Consensus         1 ~~d~~i~vwd~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~--   64 (179)
                      +.||.|++||+. ....+..+. |...|.+++|+|++..+++++          ..++++  +..|...|.+++|+|+  
T Consensus       193 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~  272 (401)
T 4aez_A          193 SRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQS  272 (401)
T ss_dssp             ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTST
T ss_pred             cCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCC
Confidence            468999999998 455555554 889999999999996666655          334444  6789999999999997  


Q ss_pred             CeEEEec--CCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEE--eccCCcEEEEEcCCCccccccccCCCCCC
Q 038439           65 DELASAS--TDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIAC--GSESNEVYVYHKEISKPVTWHRFSSPDMD  140 (179)
Q Consensus        65 ~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~d~~v~vwd~~~~~~~~~~~~~~~~~~  140 (179)
                      ..+++++  .|+.|++||+++++.+..+. +...+.+++|+|+++++++  |+.|+.|++||+++++......+..+   
T Consensus       273 ~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h---  348 (401)
T 4aez_A          273 NLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH---  348 (401)
T ss_dssp             TEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECC---
T ss_pred             CEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCC---
Confidence            5666655  79999999999999888886 5678999999999999998  55899999999998766655444322   


Q ss_pred             CCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          141 DTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       141 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                             ...|.+++|+|++++|++++.||.|++||+.+
T Consensus       349 -------~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          349 -------DTRVLYSALSPDGRILSTAASDENLKFWRVYD  380 (401)
T ss_dssp             -------SSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred             -------CCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence                   67899999999999999999999999999863

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.4e-29  Score=178.83  Aligned_cols=179  Identities=15%  Similarity=0.193  Sum_probs=142.8

Q ss_pred             CCCccEEEEEcCCceeEEeecC-------CCceeEEEEcCCCCeEEEEe-CCC--------------cee--ee-cccCc
Q 038439            1 MAYGKVKVWCTRQEASVLNIDM-------KANICCVKYNPGSSNYIAKY-QST--------------APC--VH-GHKKA   55 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~-~~~--------------~~~--~~-~~~~~   55 (179)
                      +.||.|++||+.+++.+..+..       ...|.+++|+|++..+++++ ..+              .++  +. +|...
T Consensus       185 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~  264 (416)
T 2pm9_A          185 GSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKG  264 (416)
T ss_dssp             SSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSC
T ss_pred             cCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCc
Confidence            4789999999999998888863       67899999999986666665 221              223  55 79999


Q ss_pred             eeEEEEee-C-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCC-CEEEEeccCCcEEEEEcCCCcccccc
Q 038439           56 VSYVKFLS-N-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNS-EYIACGSESNEVYVYHKEISKPVTWH  132 (179)
Q Consensus        56 i~~~~~~~-~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~v~vwd~~~~~~~~~~  132 (179)
                      |.+++|+| + .+|++++.|+.|++||+++++++..+..|...|.+++|+|++ .++++++.|+.|++||+.+.......
T Consensus       265 v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~  344 (416)
T 2pm9_A          265 ILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDE  344 (416)
T ss_dssp             EEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC
T ss_pred             eeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCccc
Confidence            99999999 6 899999999999999999999999999999999999999998 89999999999999999887644322


Q ss_pred             cc------------CCC------C-----CCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          133 RF------------SSP------D-----MDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       133 ~~------------~~~------~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      ..            ..+      .     ........+...+..++|+|+|++|++++.|+.|+||++.+
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          345 QETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI  414 (416)
T ss_dssp             ----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred             ccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence            11            000      0     00000111256677899999999999999999999999864

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.5e-29  Score=172.86  Aligned_cols=163  Identities=13%  Similarity=0.054  Sum_probs=129.1

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-------------------CCCcee---eecccCceeE
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-------------------QSTAPC---VHGHKKAVSY   58 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------------~~~~~~---~~~~~~~i~~   58 (179)
                      +.||+|++||+.+++.+..+. ...|.++.|+|+   +++++                   ...+.+   ..+|..+|.+
T Consensus        55 ~~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  130 (343)
T 3lrv_A           55 CEDGALHFTQLKDSKTITTIT-TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIY  130 (343)
T ss_dssp             EETTEEEEEEESSSSCEEEEE-EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEE
T ss_pred             CCCCcEEEEECCCCcEEEEEe-cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEE
Confidence            469999999999998877776 455677777765   33333                   122222   2356688999


Q ss_pred             EEEee--C-CeEEEecCCCcEEEEecCCCcceeeec-CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccc-cccc
Q 038439           59 VKFLS--N-DELASASTDSTLRLWDVKENLPVRTFR-GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPV-TWHR  133 (179)
Q Consensus        59 ~~~~~--~-~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~-~~~~  133 (179)
                      ++|+|  + .++++++.|+.|++||+++++.+.... .+...+.+++|+|++.++++|+.|+.|++||+++++.+ ..+.
T Consensus       131 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~  210 (343)
T 3lrv_A          131 MYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFP  210 (343)
T ss_dssp             EECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECC
T ss_pred             EEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEe
Confidence            99999  8 899999999999999999988866653 34557999999999999999999999999999998765 3332


Q ss_pred             cCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          134 FSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       134 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      .           .|...|.+++|+|++.+|++++ |+.|++||+++
T Consensus       211 ~-----------~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~  244 (343)
T 3lrv_A          211 V-----------DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRK  244 (343)
T ss_dssp             C-----------CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTS
T ss_pred             c-----------cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCC
Confidence            1           1267899999999999999999 45999999863

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.4e-27  Score=166.51  Aligned_cols=168  Identities=9%  Similarity=0.042  Sum_probs=129.8

Q ss_pred             CCCccEEEEEcC---------CceeEEee--cCCCceeEEEEcC--CCCeEEEEe----------CCCcee--e-ecccC
Q 038439            1 MAYGKVKVWCTR---------QEASVLNI--DMKANICCVKYNP--GSSNYIAKY----------QSTAPC--V-HGHKK   54 (179)
Q Consensus         1 ~~d~~i~vwd~~---------~~~~~~~~--~~~~~v~~~~~~~--~~~~~~~~~----------~~~~~~--~-~~~~~   54 (179)
                      |.|++|++|+..         +++.+..+  .|..+|.+++|+|  ++..+++++          ..++.+  . ..|..
T Consensus        92 s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~  171 (343)
T 3lrv_A           92 GPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDV  171 (343)
T ss_dssp             CSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSC
T ss_pred             cCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCC
Confidence            578999999665         44444444  3567899999999  886665555          333444  2 34566


Q ss_pred             ceeEEEEeeC-CeEEEecCCCcEEEEecCCCcce-eeecC-CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccc
Q 038439           55 AVSYVKFLSN-DELASASTDSTLRLWDVKENLPV-RTFRG-HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTW  131 (179)
Q Consensus        55 ~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~  131 (179)
                      .|.+++|+|+ .++++|+.|+.|++||+++++.+ ..+.. |...|.+++|+|++.+|++++ ++.|++||+++++....
T Consensus       172 ~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~  250 (343)
T 3lrv_A          172 EYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLA  250 (343)
T ss_dssp             CCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBS
T ss_pred             ceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCccee
Confidence            8999999999 89999999999999999998877 77887 999999999999999999999 55999999999876544


Q ss_pred             cccCCCCCCCCcccCCcceE--EEEEEccCCCeEEEEeC-CCcEEEEeec
Q 038439          132 HRFSSPDMDDTDEDAGSYFI--SAVCWKSDSPTMLTANS-QGTIKVLVLA  178 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~-dg~i~iwd~~  178 (179)
                      +.....        + ...+  .+++|+|++++|++++. |+.+++|++.
T Consensus       251 ~~~~~~--------~-~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~  291 (343)
T 3lrv_A          251 YPTYTI--------P-EFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFD  291 (343)
T ss_dssp             SCCCBC--------------CCEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             eccccc--------c-cccccceEEEECCCCCEEEEecCCCCcEEEEEEc
Confidence            332100        0 1222  46999999999999998 9999999874

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.96  E-value=8.6e-28  Score=168.48  Aligned_cols=166  Identities=11%  Similarity=0.150  Sum_probs=135.7

Q ss_pred             CCCccEEEEEcCCce--eEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee----eecccCceeEEEEee
Q 038439            1 MAYGKVKVWCTRQEA--SVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC----VHGHKKAVSYVKFLS   63 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~----~~~~~~~i~~~~~~~   63 (179)
                      +.|+.|++||+.+++  .+..+. |...|.+++|+|++..+++++          ..++..    +..|...|.+++|+|
T Consensus        27 ~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~  106 (372)
T 1k8k_C           27 PNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP  106 (372)
T ss_dssp             CSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT
T ss_pred             eCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECC
Confidence            478999999999887  677775 889999999999997666665          222211    467889999999999


Q ss_pred             C-CeEEEecCCCcEEEEecCCCcc---eee-ecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCC-------------
Q 038439           64 N-DELASASTDSTLRLWDVKENLP---VRT-FRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEI-------------  125 (179)
Q Consensus        64 ~-~~l~~~~~d~~v~iwd~~~~~~---~~~-~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~-------------  125 (179)
                      + .++++++.|+.|++||++.++.   ... ...|...+.+++|+|+++++++++.|+.|++||++.             
T Consensus       107 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~  186 (372)
T 1k8k_C          107 NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG  186 (372)
T ss_dssp             TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTB
T ss_pred             CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccc
Confidence            9 9999999999999999988763   233 356788999999999999999999999999999753             


Q ss_pred             -----CccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          126 -----SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       126 -----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                           ++.+..+.            .|...|.+++|+|++++|++++.||.|++||++
T Consensus       187 ~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  232 (372)
T 1k8k_C          187 SKMPFGELMFESS------------SSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD  232 (372)
T ss_dssp             SCCCTTCEEEECC------------CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred             cccchhhheEecC------------CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence                 22222221            126789999999999999999999999999985

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.96  E-value=1.6e-28  Score=169.60  Aligned_cols=168  Identities=15%  Similarity=0.191  Sum_probs=131.3

Q ss_pred             CCCccEEEEEcCCce--eEEeec-CCCceeEEEEcCC--CCeEEEEe----------CCC--cee--eecccCceeEEEE
Q 038439            1 MAYGKVKVWCTRQEA--SVLNID-MKANICCVKYNPG--SSNYIAKY----------QST--APC--VHGHKKAVSYVKF   61 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~~~~~~----------~~~--~~~--~~~~~~~i~~~~~   61 (179)
                      |.|++|+|||+.+++  .+..+. |..+|.+++|+|+  +..+++++          ..+  +.+  +.+|...|.+++|
T Consensus        32 s~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~  111 (316)
T 3bg1_A           32 SSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCW  111 (316)
T ss_dssp             ETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEE
T ss_pred             eCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEE
Confidence            479999999998765  345554 8899999999863  65555555          222  223  6789999999999


Q ss_pred             eeC---CeEEEecCCCcEEEEecCCCcc---eeeecCCCCCeEEEEEeeC-----------------CCEEEEeccCCcE
Q 038439           62 LSN---DELASASTDSTLRLWDVKENLP---VRTFRGHMNEKNFVGLTVN-----------------SEYIACGSESNEV  118 (179)
Q Consensus        62 ~~~---~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~-----------------~~~~~~~~~d~~v  118 (179)
                      +|+   .+|++++.|+.|++||++.+..   ...+..|...+.+++|+|+                 +++|++|+.|+.|
T Consensus       112 ~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v  191 (316)
T 3bg1_A          112 APHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLI  191 (316)
T ss_dssp             CCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBC
T ss_pred             CCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeE
Confidence            997   5799999999999999987532   3455678889999999997                 4689999999999


Q ss_pred             EEEEcCCCcc-ccccccCCCCCCCCcccCCcceEEEEEEccCC----CeEEEEeCCCcEEEEeec
Q 038439          119 YVYHKEISKP-VTWHRFSSPDMDDTDEDAGSYFISAVCWKSDS----PTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       119 ~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~iwd~~  178 (179)
                      ++||++.... .....+..          |...|.+++|+|++    ++|++++.|++|++||++
T Consensus       192 ~lWd~~~~~~~~~~~~l~~----------h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~  246 (316)
T 3bg1_A          192 KLWKEEEDGQWKEEQKLEA----------HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD  246 (316)
T ss_dssp             CEEEECTTSCEEEEECCBC----------CSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred             EEEEeCCCCccceeeeccc----------CCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence            9999975432 11122222          27789999999986    889999999999999975

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.96  E-value=2.1e-27  Score=168.19  Aligned_cols=179  Identities=17%  Similarity=0.191  Sum_probs=140.5

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCC--eEEEEe-----------CCCcee--eecccCceeEEEEeeC-
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSS--NYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-   64 (179)
                      +.||.|++||+.+++.+..+.+...+.++.|+|.+.  .+++++           ..++.+  +.+|...|.+++|+|+ 
T Consensus       119 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~  198 (408)
T 4a11_B          119 SFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRY  198 (408)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSC
T ss_pred             eCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCC
Confidence            368999999999999999999999999999999653  244444           334444  7789999999999999 


Q ss_pred             C-eEEEecCCCcEEEEecCCCc-ceeee---------------cCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCc
Q 038439           65 D-ELASASTDSTLRLWDVKENL-PVRTF---------------RGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK  127 (179)
Q Consensus        65 ~-~l~~~~~d~~v~iwd~~~~~-~~~~~---------------~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~  127 (179)
                      . .+++++.|+.|++||++.+. .+..+               ..|...|.+++|+|+++++++++.|+.|++||+++++
T Consensus       199 ~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  278 (408)
T 4a11_B          199 DYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE  278 (408)
T ss_dssp             TTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             CcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCc
Confidence            5 58999999999999998754 33333               4678889999999999999999999999999999876


Q ss_pred             cccccccCCC-----------------------------------CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcE
Q 038439          128 PVTWHRFSSP-----------------------------------DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTI  172 (179)
Q Consensus       128 ~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  172 (179)
                      ..........                                   .........|...|.+++|+|++++|++++.||.|
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i  358 (408)
T 4a11_B          279 NTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNI  358 (408)
T ss_dssp             BCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             cceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeE
Confidence            5433211100                                   00000112237789999999999999999999999


Q ss_pred             EEEeecC
Q 038439          173 KVLVLAA  179 (179)
Q Consensus       173 ~iwd~~~  179 (179)
                      ++||+++
T Consensus       359 ~iw~~~~  365 (408)
T 4a11_B          359 LAWVPSL  365 (408)
T ss_dssp             EEEEECC
T ss_pred             EEEeCCC
Confidence            9999864

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=1.3e-27  Score=167.40  Aligned_cols=162  Identities=14%  Similarity=0.141  Sum_probs=129.4

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe---------CCC-cee--eecccCceeEEEEeeCCeEE
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY---------QST-APC--VHGHKKAVSYVKFLSNDELA   68 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------~~~-~~~--~~~~~~~i~~~~~~~~~~l~   68 (179)
                      +.|++|+|||..+++++..+.+..+|.+++|+++.  ++++.         ... +.+  +..   +...+++++ ..++
T Consensus        78 ~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~-~~la  151 (355)
T 3vu4_A           78 GVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREF--IVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN-GLLV  151 (355)
T ss_dssp             SSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSE--EEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-TEEE
T ss_pred             CCccEEEEEECCCCcEEEEEECCCceEEEEEcCCE--EEEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc-cEEE
Confidence            35789999999999999999999999999999874  33333         111 222  222   333445555 5555


Q ss_pred             E--ecCCCcEEEEecCCCc----------------ceeeecCCCCCeEEEEEeeCCCEEEEeccCCc-EEEEEcCCCccc
Q 038439           69 S--ASTDSTLRLWDVKENL----------------PVRTFRGHMNEKNFVGLTVNSEYIACGSESNE-VYVYHKEISKPV  129 (179)
Q Consensus        69 ~--~~~d~~v~iwd~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~-v~vwd~~~~~~~  129 (179)
                      .  ++.++.|++||+.+++                .+..+.+|...|.+++|+|+|++|++|+.|+. |++||+++++.+
T Consensus       152 ~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~  231 (355)
T 3vu4_A          152 YSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV  231 (355)
T ss_dssp             EEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE
T ss_pred             EeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence            5  6889999999999765                26788899999999999999999999999998 999999999888


Q ss_pred             cccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          130 TWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ..+....          |...|.+++|+|++++|++++.|+.|++||++
T Consensus       232 ~~~~~g~----------h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~  270 (355)
T 3vu4_A          232 REFRRGL----------DRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF  270 (355)
T ss_dssp             EEEECTT----------CCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred             EEEEcCC----------CCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence            7665211          27789999999999999999999999999985

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.96  E-value=7.7e-28  Score=170.96  Aligned_cols=165  Identities=15%  Similarity=0.267  Sum_probs=131.5

Q ss_pred             CCccEEEEEcCCceeEEeec--CCCceeEEEEcCCCCeEEEEe-------------------------------------
Q 038439            2 AYGKVKVWCTRQEASVLNID--MKANICCVKYNPGSSNYIAKY-------------------------------------   42 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~-------------------------------------   42 (179)
                      .||.|++||+.+++....+.  |...|.+++|+|++..+++++                                     
T Consensus       111 ~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~  190 (401)
T 4aez_A          111 LERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLS  190 (401)
T ss_dssp             ETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEE
T ss_pred             CCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEE
Confidence            46777777777776655554  466677777777775444443                                     


Q ss_pred             -------------C-CCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeC
Q 038439           43 -------------Q-STAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVN  105 (179)
Q Consensus        43 -------------~-~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  105 (179)
                                   + ....+  +.+|...|.+++|+|+ .+|++++.|+.|++||+++++.+..+..|...|.+++|+|+
T Consensus       191 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~  270 (401)
T 4aez_A          191 SGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPW  270 (401)
T ss_dssp             EEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTT
T ss_pred             EEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCC
Confidence                         1 22223  6778999999999999 99999999999999999999999999899999999999997


Q ss_pred             CC-EEEEec--cCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEE--EeCCCcEEEEeecC
Q 038439          106 SE-YIACGS--ESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLT--ANSQGTIKVLVLAA  179 (179)
Q Consensus       106 ~~-~~~~~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~iwd~~~  179 (179)
                      +. ++++++  .|+.|++||+++++.+..+..             ...+.+++|+|+++++++  |+.||.|++||+++
T Consensus       271 ~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          271 QSNLLATGGGTMDKQIHFWNAATGARVNTVDA-------------GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             STTEEEEECCTTTCEEEEEETTTCCEEEEEEC-------------SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred             CCCEEEEecCCCCCEEEEEECCCCCEEEEEeC-------------CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence            65 555654  799999999999988776643             567999999999999999  55899999999863

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.1e-27  Score=162.86  Aligned_cols=163  Identities=19%  Similarity=0.257  Sum_probs=136.4

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcC-CCCeEEEEe--------CCCcee--eec-ccCceeEEEEeeCCeE
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNP-GSSNYIAKY--------QSTAPC--VHG-HKKAVSYVKFLSNDEL   67 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~~--------~~~~~~--~~~-~~~~i~~~~~~~~~~l   67 (179)
                      +.||.|++||  .++.+..+. |..++.+++|+| ++..+++++        +..+.+  +.. |...+.+++|+|++.+
T Consensus       121 ~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~  198 (313)
T 3odt_A          121 SWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHF  198 (313)
T ss_dssp             ETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTEE
T ss_pred             eCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCeE
Confidence            4689999999  556666664 889999999998 665555554        222333  444 8899999999999559


Q ss_pred             EEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCC
Q 038439           68 ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAG  147 (179)
Q Consensus        68 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  147 (179)
                      ++++.|+.|++||+++++.+..+..|...+.+++|+|++ .+++++.|+.|++||+++++.+..+...            
T Consensus       199 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~------------  265 (313)
T 3odt_A          199 ISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP------------  265 (313)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS------------
T ss_pred             EEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc------------
Confidence            999999999999999999999999999999999999999 6889999999999999999877665432            


Q ss_pred             cceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          148 SYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       148 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      ...|.+++|+|+++ +++++.||.|++||+++
T Consensus       266 ~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~  296 (313)
T 3odt_A          266 AISIWSVDCMSNGD-IIVGSSDNLVRIFSQEK  296 (313)
T ss_dssp             SSCEEEEEECTTSC-EEEEETTSCEEEEESCG
T ss_pred             CceEEEEEEccCCC-EEEEeCCCcEEEEeCCC
Confidence            56899999999998 66799999999999863

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.96  E-value=4.5e-28  Score=169.38  Aligned_cols=175  Identities=18%  Similarity=0.257  Sum_probs=138.3

Q ss_pred             CCccEEEEEcCCceeEEeec------CCCceeEEEEcCCCC---eEEEEe-----------CCCcee--eecccCceeEE
Q 038439            2 AYGKVKVWCTRQEASVLNID------MKANICCVKYNPGSS---NYIAKY-----------QSTAPC--VHGHKKAVSYV   59 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~------~~~~v~~~~~~~~~~---~~~~~~-----------~~~~~~--~~~~~~~i~~~   59 (179)
                      .++.|++||+.+++.+..+.      +...|.+++|+|++.   .+++++           ..++.+  +.+|...|.++
T Consensus        42 ~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~  121 (366)
T 3k26_A           42 GSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINEL  121 (366)
T ss_dssp             ETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEE
T ss_pred             CCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEE
Confidence            36799999999887666553      567899999999932   355554           344555  77899999999


Q ss_pred             EEee-C-CeEEEecCCCcEEEEecCCCcceeee---cCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccccc
Q 038439           60 KFLS-N-DELASASTDSTLRLWDVKENLPVRTF---RGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF  134 (179)
Q Consensus        60 ~~~~-~-~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~  134 (179)
                      +|+| + .+|++++.|+.|++||+++++.+..+   ..|...|.+++|+|+++++++++.|+.|++||+++++....+..
T Consensus       122 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  201 (366)
T 3k26_A          122 KFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE  201 (366)
T ss_dssp             EECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHH
T ss_pred             EECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccce
Confidence            9999 6 89999999999999999999888887   67899999999999999999999999999999998765543321


Q ss_pred             C----C--C----------CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          135 S----S--P----------DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       135 ~----~--~----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .    .  .          .........|...|.+++|+  ++++++++.|+.|++||++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~  259 (366)
T 3k26_A          202 SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPG  259 (366)
T ss_dssp             HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEES
T ss_pred             eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCC
Confidence            0    0  0          00000011137789999998  7799999999999999975

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.96  E-value=1.1e-27  Score=167.94  Aligned_cols=166  Identities=13%  Similarity=0.134  Sum_probs=138.7

Q ss_pred             CCCccEEEEEcCCceeEEee---cCCCceeEEEEcCCCCeEEEEe----------CCCce---e---eecccCceeEEEE
Q 038439            1 MAYGKVKVWCTRQEASVLNI---DMKANICCVKYNPGSSNYIAKY----------QSTAP---C---VHGHKKAVSYVKF   61 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~----------~~~~~---~---~~~~~~~i~~~~~   61 (179)
                      +.||.|++||+.+++....+   .|...|.+++|+|++..+++++          .....   .   ...|...|.+++|
T Consensus        71 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~  150 (372)
T 1k8k_C           71 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW  150 (372)
T ss_dssp             ETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred             cCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEE
Confidence            36899999999988754443   4788999999999996666555          11221   1   3568899999999


Q ss_pred             eeC-CeEEEecCCCcEEEEecC------------------CCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEE
Q 038439           62 LSN-DELASASTDSTLRLWDVK------------------ENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYH  122 (179)
Q Consensus        62 ~~~-~~l~~~~~d~~v~iwd~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd  122 (179)
                      +|+ .++++++.|+.|++||++                  .++.+..+..|...+.+++|+|++++|++++.|+.|++||
T Consensus       151 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  230 (372)
T 1k8k_C          151 HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD  230 (372)
T ss_dssp             CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             cCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            999 899999999999999954                  5677888888999999999999999999999999999999


Q ss_pred             cCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          123 KEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      +++++.+..+...            ...+.+++|+|++++++++ .|+.|++|++++
T Consensus       231 ~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          231 ADKKMAVATLASE------------TLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             GGGTTEEEEEECS------------SCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             CCCCceeEEEccC------------CCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            9998877665431            5689999999999988887 899999999853

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.96  E-value=1.3e-28  Score=176.61  Aligned_cols=178  Identities=17%  Similarity=0.106  Sum_probs=129.7

Q ss_pred             CCCccEEEEEcCCceeEEeec---CCCceeEEEEcCCCCeEEEEeC---------CCcee--eecccCceeEEEEeeC--
Q 038439            1 MAYGKVKVWCTRQEASVLNID---MKANICCVKYNPGSSNYIAKYQ---------STAPC--VHGHKKAVSYVKFLSN--   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~---------~~~~~--~~~~~~~i~~~~~~~~--   64 (179)
                      |.||+|++||++++.......   +...+.+++|+|++..+++++.         .++.+  +.+|...|.+++|+|+  
T Consensus       184 s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~  263 (435)
T 4e54_B          184 SMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCD  263 (435)
T ss_dssp             CSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCS
T ss_pred             eCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCc
Confidence            579999999998765543333   3446889999999965555442         22333  7789999999999998  


Q ss_pred             CeEEEecCCCcEEEEecCCCcceee---ecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCC-----
Q 038439           65 DELASASTDSTLRLWDVKENLPVRT---FRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSS-----  136 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~-----  136 (179)
                      .++++++.|+.|++||+++.+....   ...|...|.+++|+|+|.+|++++.|+.|++||+++++.........     
T Consensus       264 ~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~  343 (435)
T 4e54_B          264 WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQ  343 (435)
T ss_dssp             SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCS
T ss_pred             eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccc
Confidence            5788999999999999988654433   34688899999999999999999999999999998765432211000     


Q ss_pred             ---------------------CC---------CC--------------CCcccCCcceEEEE-EEccCCCeEEEEeCCCc
Q 038439          137 ---------------------PD---------MD--------------DTDEDAGSYFISAV-CWKSDSPTMLTANSQGT  171 (179)
Q Consensus       137 ---------------------~~---------~~--------------~~~~~~~~~~i~~~-~~~~~~~~l~~~~~dg~  171 (179)
                                           ..         ..              .....+|...|.++ +|+|+|++|++|+ |+.
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~  422 (435)
T 4e54_B          344 HLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYH  422 (435)
T ss_dssp             SSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSE
T ss_pred             cceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCc
Confidence                                 00         00              00112235556666 6999999999876 789


Q ss_pred             EEEEeecC
Q 038439          172 IKVLVLAA  179 (179)
Q Consensus       172 i~iwd~~~  179 (179)
                      |+|||+++
T Consensus       423 i~iW~~~~  430 (435)
T 4e54_B          423 ILIWSQQE  430 (435)
T ss_dssp             EEECCCC-
T ss_pred             EEEEECCc
Confidence            99999864

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.2e-28  Score=178.74  Aligned_cols=169  Identities=8%  Similarity=0.062  Sum_probs=130.8

Q ss_pred             CCCccEEEEEcCCceeE----Eeec-CCCceeEEEEcCCC-----CeEEEEe-----------CCC-----------cee
Q 038439            1 MAYGKVKVWCTRQEASV----LNID-MKANICCVKYNPGS-----SNYIAKY-----------QST-----------APC   48 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~----~~~~-~~~~v~~~~~~~~~-----~~~~~~~-----------~~~-----------~~~   48 (179)
                      +.|++|+|||+.+++..    ..+. +.+.|.+++|+|++     ..+++++           ..+           ++.
T Consensus       180 s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~  259 (524)
T 2j04_B          180 KHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPS  259 (524)
T ss_dssp             --CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCS
T ss_pred             CCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCce
Confidence            46899999999876642    2343 57889999999972     1455554           111           111


Q ss_pred             --eecccCceeEEEEeeCCeEEEecCCCcEEEEecCCCc-ceeeecCCCCCeEEE--EEeeCC-CEEEEeccCCcEEEEE
Q 038439           49 --VHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENL-PVRTFRGHMNEKNFV--GLTVNS-EYIACGSESNEVYVYH  122 (179)
Q Consensus        49 --~~~~~~~i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~~~~~~~d~~v~vwd  122 (179)
                        +.+|...|++++|+|++.|++|+.|++|++||+++++ +...+..|...|.++  .|+|++ .+|++++.|++|++||
T Consensus       260 ~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD  339 (524)
T 2j04_B          260 LTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFN  339 (524)
T ss_dssp             EEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEEC
T ss_pred             EEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEE
Confidence              5678899999999988889999999999999999763 455688899999999  567887 8999999999999999


Q ss_pred             cCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          123 KEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      +++++....+.....          ...|.+++|+|+++.+++++.|++|++||+++
T Consensus       340 ~~~~~~~~~~~~~~~----------~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~  386 (524)
T 2j04_B          340 PKDIATTKTTVSRFR----------GSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA  386 (524)
T ss_dssp             GGGHHHHCEEEEECS----------CCSCCCEEEETTTTEEEEECSSSEEEEEETTC
T ss_pred             CCCCCcccccccccc----------cCcccceEeCCCcCeEEEeCCCCcEEEEECcc
Confidence            998776544321100          22478899999999999999999999999863

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.96  E-value=4.4e-28  Score=169.02  Aligned_cols=179  Identities=20%  Similarity=0.282  Sum_probs=135.5

Q ss_pred             CCCccEEEEEcCCce-eEEeec-C----CCceeEEE----EcCCCCeEEEEe----------CCCcee-eecccCceeEE
Q 038439            1 MAYGKVKVWCTRQEA-SVLNID-M----KANICCVK----YNPGSSNYIAKY----------QSTAPC-VHGHKKAVSYV   59 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~-~~~~~~-~----~~~v~~~~----~~~~~~~~~~~~----------~~~~~~-~~~~~~~i~~~   59 (179)
                      +.||.|++||+.+++ .+..+. +    ...+.+++    |+|++..+++++          +.++.. ...|...|.++
T Consensus       136 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~  215 (357)
T 3i2n_A          136 SRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSL  215 (357)
T ss_dssp             ETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEE
T ss_pred             eCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEE
Confidence            368999999999876 566664 2    34799998    788886555554          333334 66788999999


Q ss_pred             EEee---C-CeEEEecCCCcEEEEecCCCcceeeec-----CCCCCeEEEEEeeCCC-EEEEeccCCcEEEEEcCCCccc
Q 038439           60 KFLS---N-DELASASTDSTLRLWDVKENLPVRTFR-----GHMNEKNFVGLTVNSE-YIACGSESNEVYVYHKEISKPV  129 (179)
Q Consensus        60 ~~~~---~-~~l~~~~~d~~v~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~-~~~~~~~d~~v~vwd~~~~~~~  129 (179)
                      +|+|   + ..+++++.|+.|++||+++++.+..+.     .|...|.+++|+|++. ++++++.||.|++||++++...
T Consensus       216 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  295 (357)
T 3i2n_A          216 EFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR  295 (357)
T ss_dssp             EESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred             EcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence            9999   8 999999999999999998876665554     8999999999999998 7999999999999999876544


Q ss_pred             cccccCCCCC-------CCCcccCCcceEEEEEEccCCCeEE-EEeCCCcEEEEeecC
Q 038439          130 TWHRFSSPDM-------DDTDEDAGSYFISAVCWKSDSPTML-TANSQGTIKVLVLAA  179 (179)
Q Consensus       130 ~~~~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~iwd~~~  179 (179)
                      ..........       .......|...|.+++|+|++++|+ +++.||.|++||+.+
T Consensus       296 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          296 SKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             --CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred             ccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence            2211111000       0000112277899999999999998 799999999999864

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=9.6e-29  Score=180.62  Aligned_cols=165  Identities=11%  Similarity=0.099  Sum_probs=131.7

Q ss_pred             CCCccEEEEEcCCcee-----------EEee-cCCCceeEEEEcCCCCeEEEEe----------CCC-cee--eecccCc
Q 038439            1 MAYGKVKVWCTRQEAS-----------VLNI-DMKANICCVKYNPGSSNYIAKY----------QST-APC--VHGHKKA   55 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~-----------~~~~-~~~~~v~~~~~~~~~~~~~~~~----------~~~-~~~--~~~~~~~   55 (179)
                      |.||+|+|||+.+++.           ...+ .|...|++++|+|++ .+++++          +.+ .+.  +.+|...
T Consensus       232 s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~  310 (524)
T 2j04_B          232 SQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSY  310 (524)
T ss_dssp             ETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSC
T ss_pred             ecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeeccccc
Confidence            4699999999986642           1234 377899999999875 444444          222 233  7889999


Q ss_pred             eeEE--EEeeC--CeEEEecCCCcEEEEecCCCcceeeecCCCC--CeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccc
Q 038439           56 VSYV--KFLSN--DELASASTDSTLRLWDVKENLPVRTFRGHMN--EKNFVGLTVNSEYIACGSESNEVYVYHKEISKPV  129 (179)
Q Consensus        56 i~~~--~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~  129 (179)
                      |.++  .|+|+  .+|++++.|++|++||+++++++..+.+|..  .+.+++|+|++..+++++.|+.|++||++++..+
T Consensus       311 V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~  390 (524)
T 2j04_B          311 ILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAV  390 (524)
T ss_dssp             EEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCC
T ss_pred             EEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccc
Confidence            9999  46665  4789999999999999998877766666543  4789999999999999999999999999988765


Q ss_pred             cccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          130 TWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ..+.           + |...|++++|+|++++|++|+.||+|++||+.
T Consensus       391 ~~l~-----------g-H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          391 HPLV-----------S-RETTITAIGVSRLHPMVLAGSADGSLIITNAA  427 (524)
T ss_dssp             EEEE-----------E-CSSCEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred             eeee-----------c-CCCceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence            4432           1 27789999999999999999999999999964

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.8e-28  Score=174.66  Aligned_cols=167  Identities=10%  Similarity=0.158  Sum_probs=133.8

Q ss_pred             CCCccEEEEEcCC---ce---eEEeecCCCceeEEEEcCCCCeEEEEeCCCcee---e------------e---------
Q 038439            1 MAYGKVKVWCTRQ---EA---SVLNIDMKANICCVKYNPGSSNYIAKYQSTAPC---V------------H---------   50 (179)
Q Consensus         1 ~~d~~i~vwd~~~---~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---~------------~---------   50 (179)
                      +.||+|+|||+.+   +.   ....+.|..+|.+++|+|++..+++++..+...   +            .         
T Consensus        83 s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~  162 (437)
T 3gre_A           83 SDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINL  162 (437)
T ss_dssp             ETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEG
T ss_pred             cCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEc
Confidence            4799999999876   32   345557899999999999996666665222211   1            1         


Q ss_pred             -c--ccCceeEEE--EeeC-CeEEEecCCCcEEEEecCCCcceeeecC--CCCCeEEEEEeeCCCEEEEeccCCcEEEEE
Q 038439           51 -G--HKKAVSYVK--FLSN-DELASASTDSTLRLWDVKENLPVRTFRG--HMNEKNFVGLTVNSEYIACGSESNEVYVYH  122 (179)
Q Consensus        51 -~--~~~~i~~~~--~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd  122 (179)
                       .  +...+.++.  ++++ ..+++++.|+.|++||+++++.+..+..  |...|.+++|+|++.++++|+.||.|++||
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  242 (437)
T 3gre_A          163 KNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWD  242 (437)
T ss_dssp             GGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             cCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEE
Confidence             1  445566666  4456 8999999999999999999999999987  788999999999999999999999999999


Q ss_pred             cCCCccccccccCCCCCCCCcccCCcceEEEEEEc----cCCCeEEEEeCCCcEEEEeec
Q 038439          123 KEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWK----SDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      +++++++..+...          + ...|.+++|+    |++++|++++.||.|++||++
T Consensus       243 ~~~~~~~~~~~~~----------~-~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~  291 (437)
T 3gre_A          243 IRFNVLIRSWSFG----------D-HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV  291 (437)
T ss_dssp             TTTTEEEEEEBCT----------T-CEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred             cCCccEEEEEecC----------C-CCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence            9998887765432          1 5589999665    467899999999999999986

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.6e-27  Score=166.18  Aligned_cols=169  Identities=13%  Similarity=0.144  Sum_probs=136.9

Q ss_pred             CCCccEEEEEcC--CceeEEeec-CCCceeEEEEcCC--CCeEEEEe----------CCCc--ee--eecccCceeEEEE
Q 038439            1 MAYGKVKVWCTR--QEASVLNID-MKANICCVKYNPG--SSNYIAKY----------QSTA--PC--VHGHKKAVSYVKF   61 (179)
Q Consensus         1 ~~d~~i~vwd~~--~~~~~~~~~-~~~~v~~~~~~~~--~~~~~~~~----------~~~~--~~--~~~~~~~i~~~~~   61 (179)
                      +.||.|+|||+.  +.+.+..+. |..+|.+++|+|+  +..+++++          ..++  .+  +..|...|.+++|
T Consensus        30 ~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~  109 (379)
T 3jrp_A           30 SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQW  109 (379)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE
T ss_pred             ECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEe
Confidence            368999999998  556666665 8899999999977  75555555          2332  33  6679999999999


Q ss_pred             eeC---CeEEEecCCCcEEEEecCCCc--ceeeecCCCCCeEEEEEee-------------CCCEEEEeccCCcEEEEEc
Q 038439           62 LSN---DELASASTDSTLRLWDVKENL--PVRTFRGHMNEKNFVGLTV-------------NSEYIACGSESNEVYVYHK  123 (179)
Q Consensus        62 ~~~---~~l~~~~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~-------------~~~~~~~~~~d~~v~vwd~  123 (179)
                      +|+   .++++++.|+.|++||++...  ....+..|...+.+++|+|             ++.++++++.|+.|++||+
T Consensus       110 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  189 (379)
T 3jrp_A          110 APHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY  189 (379)
T ss_dssp             CCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEE
T ss_pred             CCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEe
Confidence            997   589999999999999998863  3446678899999999999             6999999999999999999


Q ss_pred             CCCccccc--cccCCCCCCCCcccCCcceEEEEEEccC---CCeEEEEeCCCcEEEEeecC
Q 038439          124 EISKPVTW--HRFSSPDMDDTDEDAGSYFISAVCWKSD---SPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       124 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~  179 (179)
                      ++++....  ..+..          |...|.+++|+|+   +++|++++.||.|++||+++
T Consensus       190 ~~~~~~~~~~~~~~~----------h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~  240 (379)
T 3jrp_A          190 NSDAQTYVLESTLEG----------HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  240 (379)
T ss_dssp             ETTTTEEEEEEEECC----------CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             cCCCcceeeEEEEec----------ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence            87654322  12221          2778999999999   89999999999999999863

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.5e-28  Score=173.60  Aligned_cols=167  Identities=14%  Similarity=0.261  Sum_probs=138.2

Q ss_pred             CCCccEEEEEcCCce------eEEee----cCCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecc-----
Q 038439            1 MAYGKVKVWCTRQEA------SVLNI----DMKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGH-----   52 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~------~~~~~----~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~-----   52 (179)
                      +.||+|++||+.+++      ....+    .|...|.+++|+|++..+++++           +.++.+  +..+     
T Consensus       133 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  212 (416)
T 2pm9_A          133 GNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSG  212 (416)
T ss_dssp             CSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSC
T ss_pred             cCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccc
Confidence            468999999999876      33332    4788999999999954566665           333344  4444     


Q ss_pred             -cCceeEEEEeeC--CeEEEecCCC---cEEEEecCCC-cceeeec-CCCCCeEEEEEee-CCCEEEEeccCCcEEEEEc
Q 038439           53 -KKAVSYVKFLSN--DELASASTDS---TLRLWDVKEN-LPVRTFR-GHMNEKNFVGLTV-NSEYIACGSESNEVYVYHK  123 (179)
Q Consensus        53 -~~~i~~~~~~~~--~~l~~~~~d~---~v~iwd~~~~-~~~~~~~-~~~~~v~~~~~~~-~~~~~~~~~~d~~v~vwd~  123 (179)
                       ...|.+++|+|+  .++++++.|+   .|++||++++ +++..+. .|...|.+++|+| ++.+|++++.|+.|++||+
T Consensus       213 ~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~  292 (416)
T 2pm9_A          213 IKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP  292 (416)
T ss_dssp             CCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECS
T ss_pred             cCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeC
Confidence             788999999999  5899999998   9999999986 6677777 8999999999999 8999999999999999999


Q ss_pred             CCCccccccccCCCCCCCCcccCCcceEEEEEEccCC-CeEEEEeCCCcEEEEeecC
Q 038439          124 EISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDS-PTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~  179 (179)
                      ++++++..+..            |...|.+++|+|++ .+|++++.|+.|++||+++
T Consensus       293 ~~~~~~~~~~~------------~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~  337 (416)
T 2pm9_A          293 ESAEQLSQFPA------------RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN  337 (416)
T ss_dssp             SSCCEEEEEEC------------SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred             CCCccceeecC------------CCCceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence            99887766542            16679999999998 8999999999999999863

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.5e-27  Score=169.89  Aligned_cols=176  Identities=10%  Similarity=0.127  Sum_probs=139.7

Q ss_pred             CCCccEEEEEcC--CceeEEee---cCCCceeEEEEcCCCCeEEEEeC----------CC---c-ee--eecccCceeEE
Q 038439            1 MAYGKVKVWCTR--QEASVLNI---DMKANICCVKYNPGSSNYIAKYQ----------ST---A-PC--VHGHKKAVSYV   59 (179)
Q Consensus         1 ~~d~~i~vwd~~--~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~----------~~---~-~~--~~~~~~~i~~~   59 (179)
                      +.||+|+|||+.  +++.+..+   .+...|.+++|+|++..+++++.          ..   . ++  +.+|...|.++
T Consensus       122 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~  201 (450)
T 2vdu_B          122 DSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDV  201 (450)
T ss_dssp             GGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEE
T ss_pred             CCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEE
Confidence            368999999999  88877776   46789999999999966666541          11   1 22  56789999999


Q ss_pred             EEeeC---C-eEEEecCCCcEEEEecCCCcceee-ecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccccc
Q 038439           60 KFLSN---D-ELASASTDSTLRLWDVKENLPVRT-FRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF  134 (179)
Q Consensus        60 ~~~~~---~-~l~~~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~  134 (179)
                      +|+|+   + +|++++.|+.|++||+++++.+.. +.+|...|.+++|+ ++++|++++.|+.|++||+++++.+..+..
T Consensus       202 ~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~  280 (450)
T 2vdu_B          202 HLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDY  280 (450)
T ss_dssp             EEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEEC
T ss_pred             EEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecc
Confidence            99997   5 789999999999999999888877 55899999999999 999999999999999999999887665542


Q ss_pred             CCCC---------C----CCCcccCCcceEEEEEEccCCCeEEEEe-CCCcEEEEee
Q 038439          135 SSPD---------M----DDTDEDAGSYFISAVCWKSDSPTMLTAN-SQGTIKVLVL  177 (179)
Q Consensus       135 ~~~~---------~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~  177 (179)
                      ....         .    ...........+..++|+|++++|++++ .++.|++|++
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          281 NSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             HHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             hhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            1100         0    0000001145789999999999999999 8999999998

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.96  E-value=5.8e-27  Score=169.02  Aligned_cols=164  Identities=18%  Similarity=0.295  Sum_probs=138.1

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEee--C-
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLS--N-   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~--~-   64 (179)
                      +.||+|++||+.+++.+..+. |.+.|.+++|+|++ .+++++          .+++.+  +.+|...|.+++|++  + 
T Consensus       139 s~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~  217 (464)
T 3v7d_B          139 ADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI  217 (464)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSC
T ss_pred             cCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCC
Confidence            479999999999999998886 89999999999988 555555          444555  778999999999996  4 


Q ss_pred             CeEEEecCCCcEEEEecCCCcc-----------------------eeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEE
Q 038439           65 DELASASTDSTLRLWDVKENLP-----------------------VRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVY  121 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~-----------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vw  121 (179)
                      .++++++.|+.|++||+++.+.                       +..+.+|...+.++  +++++++++++.|+.|++|
T Consensus       218 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vw  295 (464)
T 3v7d_B          218 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVW  295 (464)
T ss_dssp             EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEE
T ss_pred             CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEE
Confidence            7899999999999999987643                       34566677777665  6789999999999999999


Q ss_pred             EcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          122 HKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       122 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      |+++++.+..+..  +          ...|.+++|+|+++++++|+.||.|++||+++
T Consensus       296 d~~~~~~~~~~~~--~----------~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~  341 (464)
T 3v7d_B          296 DVAQMKCLYILSG--H----------TDRIYSTIYDHERKRCISASMDTTIRIWDLEN  341 (464)
T ss_dssp             ETTTTEEEEEECC--C----------SSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred             ECCCCcEEEEecC--C----------CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence            9999887765432  1          67899999999999999999999999999863

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.96  E-value=2.9e-27  Score=175.35  Aligned_cols=170  Identities=14%  Similarity=0.170  Sum_probs=143.8

Q ss_pred             CCCccEEEEEcCCc--------eeEEeec-CCCceeEEEEcCCCCeEEEEeC------------CCcee--eecccCcee
Q 038439            1 MAYGKVKVWCTRQE--------ASVLNID-MKANICCVKYNPGSSNYIAKYQ------------STAPC--VHGHKKAVS   57 (179)
Q Consensus         1 ~~d~~i~vwd~~~~--------~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~------------~~~~~--~~~~~~~i~   57 (179)
                      +.||+|++||+.++        +.+..+. |..+|.+++|+|++..+++++.            .++.+  +.+|...|.
T Consensus        85 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~  164 (615)
T 1pgu_A           85 DESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRIN  164 (615)
T ss_dssp             ETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEE
T ss_pred             cCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEE
Confidence            36899999999754        5555665 7889999999999977776652            23334  778999999


Q ss_pred             EEEEeeC-C-eEEEecCCCcEEEEecCCCcceeeecCCCC---CeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCccccc
Q 038439           58 YVKFLSN-D-ELASASTDSTLRLWDVKENLPVRTFRGHMN---EKNFVGLTVN-SEYIACGSESNEVYVYHKEISKPVTW  131 (179)
Q Consensus        58 ~~~~~~~-~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~~~~  131 (179)
                      +++|+|+ . .+++++.|+.|++||+.+++.+..+..|..   .|.+++|+|+ ++++++++.|+.|++||+++++.+..
T Consensus       165 ~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  244 (615)
T 1pgu_A          165 ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY  244 (615)
T ss_dssp             EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE
T ss_pred             EEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEE
Confidence            9999999 5 899999999999999999999999999988   9999999999 99999999999999999999887766


Q ss_pred             cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      +....        ..|...|.+++|+ ++++|++++.|+.|++||+++
T Consensus       245 ~~~~~--------~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~  283 (615)
T 1pgu_A          245 IEDDQ--------EPVQGGIFALSWL-DSQKFATVGADATIRVWDVTT  283 (615)
T ss_dssp             CCBTT--------BCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTT
T ss_pred             ecccc--------cccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCC
Confidence            52100        0127789999999 999999999999999999863

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=4.4e-27  Score=161.28  Aligned_cols=167  Identities=10%  Similarity=0.083  Sum_probs=116.8

Q ss_pred             ccEEEEEcCCceeEEeec--CCCceeEEEEcCCCCeEEEEeCCCceeeecccCceeEEEEee---C-CeEEEecCCCcEE
Q 038439            4 GKVKVWCTRQEASVLNID--MKANICCVKYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLS---N-DELASASTDSTLR   77 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~-~~l~~~~~d~~v~   77 (179)
                      ..+++|++.+++.+....  |...|..++++|+|+ +++.       +..|...+..++|+|   + ..|++++.|++|+
T Consensus       135 ~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~-~~~s-------~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIk  206 (356)
T 2w18_A          135 NIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGG-GKEN-------QFLMPPEETILTFAEVQGMQEALLGTTIMNNIV  206 (356)
T ss_dssp             EEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSC-EEEE-------EEECCCSSCEEEEEEEETSTTEEEEEETTSEEE
T ss_pred             CeEEEEecCCCcEEEecccCCCCcEEEEEECCCCc-eeee-------eccCCCceeeEEeeccCCCCceEEEecCCCcEE
Confidence            357899999998888843  899999999999984 4433       567888899999998   5 8999999999999


Q ss_pred             EEecCCCcceeeecCCC---CCeEEEEEeeCCCEE------------EEeccCCcEEEEEcCCCcccccccc---CCC--
Q 038439           78 LWDVKENLPVRTFRGHM---NEKNFVGLTVNSEYI------------ACGSESNEVYVYHKEISKPVTWHRF---SSP--  137 (179)
Q Consensus        78 iwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~------------~~~~~d~~v~vwd~~~~~~~~~~~~---~~~--  137 (179)
                      |||+.+++++.++.+|.   ..+.+++|+|+|.++            ++|+.|++|++||+.+++.+..+..   ..+  
T Consensus       207 IWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~  286 (356)
T 2w18_A          207 IWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG  286 (356)
T ss_dssp             EEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCC
T ss_pred             EEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc
Confidence            99999999999997643   356667788877665            3344555556665555443221100   000  


Q ss_pred             --------------------------CCC---CCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          138 --------------------------DMD---DTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       138 --------------------------~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                                                ...   ....+|+...+..++|+|+|++|++|+.|++|+|||+.
T Consensus       287 ~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          287 RFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred             eeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence                                      000   00112212334468999999999999999999999974

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=9.7e-28  Score=185.08  Aligned_cols=177  Identities=7%  Similarity=0.059  Sum_probs=139.0

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe----------CCCcee-eecccCceeEEEEeeC-CeEE
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY----------QSTAPC-VHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      +.||+|+||+..+.+....+.|..+|.+++|+| +..+++++          ..++.+ ...|...|++++|+|+ .+++
T Consensus        36 s~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~  114 (902)
T 2oaj_A           36 TVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWML  114 (902)
T ss_dssp             ETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEE
T ss_pred             eCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEE
Confidence            468999999999888877778889999999999 75455554          334444 2236688999999999 9999


Q ss_pred             EecCCCcEEEEecCCCcce-----------eeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCccccccccCC
Q 038439           69 SASTDSTLRLWDVKENLPV-----------RTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISKPVTWHRFSS  136 (179)
Q Consensus        69 ~~~~d~~v~iwd~~~~~~~-----------~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~  136 (179)
                      +|+.|+.|++||+++++..           ..+.+|...|.+++|+|+ +..+++|+.|+.| +||+++++.+..+....
T Consensus       115 sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~  193 (902)
T 2oaj_A          115 IGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYEL  193 (902)
T ss_dssp             EEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCB
T ss_pred             EEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEeccc
Confidence            9999999999999987653           234668889999999996 5789999999999 99999988766554320


Q ss_pred             CC-CCC-----CcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          137 PD-MDD-----TDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       137 ~~-~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      .. ...     ....+|...|++++|+|+|++|++++.||.|++||+++
T Consensus       194 ~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~  242 (902)
T 2oaj_A          194 PPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANS  242 (902)
T ss_dssp             CTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTT
T ss_pred             CCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence            00 000     01122356799999999999999999999999999853

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.8e-27  Score=169.25  Aligned_cols=164  Identities=17%  Similarity=0.198  Sum_probs=140.9

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCc---------------eeEEEEcCCCCeEEEEe----------CCCcee--eecc
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKAN---------------ICCVKYNPGSSNYIAKY----------QSTAPC--VHGH   52 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~---------------v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~   52 (179)
                      +.||.|++||+.+++.+..+. +...               +.+++|+|++ .+++++          ..++++  +..|
T Consensus       168 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~  246 (425)
T 1r5m_A          168 DVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGH  246 (425)
T ss_dssp             ETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCC
T ss_pred             ecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccC
Confidence            368999999999999888876 3333               9999999987 565555          333344  6789


Q ss_pred             cCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccc
Q 038439           53 KKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTW  131 (179)
Q Consensus        53 ~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~  131 (179)
                      ...|.+++|+|+ .+|++++.|+.|++||+++++.+..+..|...+.+++|+|++ ++++++.|+.|++||+++++.+..
T Consensus       247 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~  325 (425)
T 1r5m_A          247 HGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLAL  325 (425)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEE
T ss_pred             CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEe
Confidence            999999999999 899999999999999999999899998899999999999999 999999999999999999887765


Q ss_pred             cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      +...            ...+.+++|+|++++|++++.||.|++||++
T Consensus       326 ~~~~------------~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~  360 (425)
T 1r5m_A          326 SIVD------------GVPIFAGRISQDGQKYAVAFMDGQVNVYDLK  360 (425)
T ss_dssp             EECT------------TCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred             cccC------------CccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence            5421            6689999999999999999999999999975

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=3.1e-27  Score=169.34  Aligned_cols=166  Identities=19%  Similarity=0.257  Sum_probs=135.0

Q ss_pred             CCCccEEEEEcCC----------ceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CC----Cce---e--e
Q 038439            1 MAYGKVKVWCTRQ----------EASVLNID-MKANICCVKYNPGSSNYIAKY-----------QS----TAP---C--V   49 (179)
Q Consensus         1 ~~d~~i~vwd~~~----------~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~----~~~---~--~   49 (179)
                      +.||.|++||+.+          .+.+..+. |...|.+++|+|++..+++++           ..    ...   .  +
T Consensus       148 ~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  227 (430)
T 2xyi_A          148 TPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF  227 (430)
T ss_dssp             CSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEE
T ss_pred             CCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceee
Confidence            4689999999986          45555554 888999999999997455555           11    111   1  5


Q ss_pred             ecccCceeEEEEeeC--CeEEEecCCCcEEEEecCCC---cceeeecCCCCCeEEEEEeeCCC-EEEEeccCCcEEEEEc
Q 038439           50 HGHKKAVSYVKFLSN--DELASASTDSTLRLWDVKEN---LPVRTFRGHMNEKNFVGLTVNSE-YIACGSESNEVYVYHK  123 (179)
Q Consensus        50 ~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~v~vwd~  123 (179)
                      .+|...|.+++|+|+  ..|++++.|+.|++||++++   +.+..+..|...|++++|+|++. ++++|+.||.|++||+
T Consensus       228 ~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~  307 (430)
T 2xyi_A          228 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL  307 (430)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred             cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeC
Confidence            689999999999995  88999999999999999986   56777888999999999999987 6889999999999999


Q ss_pred             CCC-ccccccccCCCCCCCCcccCCcceEEEEEEccCCC-eEEEEeCCCcEEEEeec
Q 038439          124 EIS-KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSP-TMLTANSQGTIKVLVLA  178 (179)
Q Consensus       124 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~  178 (179)
                      ++. +++..+..            |...|.+++|+|+++ +|++++.||.|++||++
T Consensus       308 ~~~~~~~~~~~~------------h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~  352 (430)
T 2xyi_A          308 RNLKLKLHSFES------------HKDEIFQVQWSPHNETILASSGTDRRLHVWDLS  352 (430)
T ss_dssp             TCTTSCSEEEEC------------CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGG
T ss_pred             CCCCCCeEEeec------------CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCC
Confidence            984 44443331            267899999999985 68999999999999985

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.96  E-value=2.5e-27  Score=165.22  Aligned_cols=164  Identities=13%  Similarity=0.256  Sum_probs=133.7

Q ss_pred             CCccEEEEEcCCceeEE--eecCCCceeEEEEcCC---CCeEEEEe----------CCCc-ee--eecccCceeEEEE--
Q 038439            2 AYGKVKVWCTRQEASVL--NIDMKANICCVKYNPG---SSNYIAKY----------QSTA-PC--VHGHKKAVSYVKF--   61 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~--~~~~~~~v~~~~~~~~---~~~~~~~~----------~~~~-~~--~~~~~~~i~~~~~--   61 (179)
                      .||+|+|||+.+++...  .+.|..+|.+++|+|+   +..+++++          ..++ ++  +.+|...|.++.|  
T Consensus        42 ~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  121 (357)
T 3i2n_A           42 GTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIG  121 (357)
T ss_dssp             CCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEES
T ss_pred             CCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeecc
Confidence            38999999999887643  3468999999999998   55555555          2333 34  7889999999966  


Q ss_pred             ----eeC-CeEEEecCCCcEEEEecCCCc-ceeeecCCCC----CeEEEE----EeeCCCEEEEeccCCcEEEEEcCCCc
Q 038439           62 ----LSN-DELASASTDSTLRLWDVKENL-PVRTFRGHMN----EKNFVG----LTVNSEYIACGSESNEVYVYHKEISK  127 (179)
Q Consensus        62 ----~~~-~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~~~~~~~d~~v~vwd~~~~~  127 (179)
                          +|+ ..|++++.|+.|++||+++++ .+..+..+..    .+.+++    |+|+++++++++.|+.|++||+++++
T Consensus       122 ~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  201 (357)
T 3i2n_A          122 GLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA  201 (357)
T ss_dssp             GGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE
T ss_pred             ccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc
Confidence                567 899999999999999999876 6777765544    788888    67899999999999999999999987


Q ss_pred             cccccccCCCCCCCCcccCCcceEEEEEEcc---CCCeEEEEeCCCcEEEEeec
Q 038439          128 PVTWHRFSSPDMDDTDEDAGSYFISAVCWKS---DSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .......             ...|.+++|+|   ++++|++++.||.|++||++
T Consensus       202 ~~~~~~~-------------~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  242 (357)
T 3i2n_A          202 LRWETNI-------------KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMR  242 (357)
T ss_dssp             EEEEEEC-------------SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEE
T ss_pred             eeeecCC-------------CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc
Confidence            6544332             66899999999   99999999999999999985

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.96  E-value=4.1e-28  Score=170.70  Aligned_cols=163  Identities=11%  Similarity=0.170  Sum_probs=124.7

Q ss_pred             CCCccEEEEEcCCce---eEEee-cCCCceeEEEEcCCCCeEEEEe----------CCCc---ee--eec-ccCceeEEE
Q 038439            1 MAYGKVKVWCTRQEA---SVLNI-DMKANICCVKYNPGSSNYIAKY----------QSTA---PC--VHG-HKKAVSYVK   60 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~---~~~~~-~~~~~v~~~~~~~~~~~~~~~~----------~~~~---~~--~~~-~~~~i~~~~   60 (179)
                      +.|++|++||+.+++   ....+ .|...|.+++|+|++..+++++          +.++   .+  +.+ |...|.+++
T Consensus        74 s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~  153 (377)
T 3dwl_C           74 SQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLD  153 (377)
T ss_dssp             ETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEE
T ss_pred             eCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEE
Confidence            468999999999877   34443 5889999999999997666665          2222   12  555 999999999


Q ss_pred             EeeC-CeEEEecCCCcEEEEecCC------------------CcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEE
Q 038439           61 FLSN-DELASASTDSTLRLWDVKE------------------NLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVY  121 (179)
Q Consensus        61 ~~~~-~~l~~~~~d~~v~iwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vw  121 (179)
                      |+|+ .+|++++.|+.|++||++.                  ++++..+ .|...|.+++|+|++++|++++.|+.|++|
T Consensus       154 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw  232 (377)
T 3dwl_C          154 WHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIA  232 (377)
T ss_dssp             ECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-C
T ss_pred             EcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEE
Confidence            9999 8999999999999999852                  3455566 788999999999999999999999999999


Q ss_pred             EcCCCcc----ccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          122 HKEISKP----VTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       122 d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      |+++++.    +..+..            |...|.+++|+|++++|++++.++.+ +|+.
T Consensus       233 d~~~~~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~  279 (377)
T 3dwl_C          233 YPSAPEQPPRALITVKL------------SQLPLRSLLWANESAIVAAGYNYSPI-LLQG  279 (377)
T ss_dssp             EECSTTSCEEECCCEEC------------SSSCEEEEEEEETTEEEEEESSSSEE-EECC
T ss_pred             ECCCCCCcceeeEeecC------------CCCceEEEEEcCCCCEEEEEcCCcEE-EEEe
Confidence            9999876    333221            26789999999999999998877655 6664

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.3e-26  Score=161.95  Aligned_cols=165  Identities=11%  Similarity=0.151  Sum_probs=142.9

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCC-----Cc---------------------ee--eecc
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQS-----TA---------------------PC--VHGH   52 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~---------------------~~--~~~~   52 (179)
                      +.||+|++||+.+++.+..+.+..+|.+++|+|++..+++++..     +.                     ++  +..|
T Consensus        93 ~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  172 (369)
T 3zwl_B           93 SADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH  172 (369)
T ss_dssp             ETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred             eCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence            46899999999999999999999999999999999766665422     11                     11  3344


Q ss_pred             cC--ceeEEEEeeC-CeEEEecCCCcEEEEecCC-CcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcc
Q 038439           53 KK--AVSYVKFLSN-DELASASTDSTLRLWDVKE-NLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKP  128 (179)
Q Consensus        53 ~~--~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~  128 (179)
                      ..  .+.+++|+|+ ..+++++.|+.|++||+++ .+.+..+..|...+.+++|+|++.+|++++.|+.|++||+++++.
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  252 (369)
T 3zwl_B          173 EGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV  252 (369)
T ss_dssp             TTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             cCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCce
Confidence            44  8999999999 9999999999999999998 778888888999999999999999999999999999999999888


Q ss_pred             ccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCC--------------cEEEEeec
Q 038439          129 VTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG--------------TIKVLVLA  178 (179)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~  178 (179)
                      +..+..             ...+..++|+|+++++++++.++              .+++||+.
T Consensus       253 ~~~~~~-------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  303 (369)
T 3zwl_B          253 LKKYET-------------DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKI  303 (369)
T ss_dssp             EEEEEC-------------SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETT
T ss_pred             eeeecC-------------CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecC
Confidence            776653             66799999999999999999988              89999875

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.96  E-value=8.3e-27  Score=163.00  Aligned_cols=167  Identities=11%  Similarity=0.193  Sum_probs=138.4

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee-eecccCceeEEEEeeC-CeE
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC-VHGHKKAVSYVKFLSN-DEL   67 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~i~~~~~~~~-~~l   67 (179)
                      +.||.|++||+.+++.+..+. |...|.+++|+|++..+++++          ..++.+ ...+...+.+++|+|+ ..+
T Consensus        51 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l  130 (369)
T 3zwl_B           51 SKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYF  130 (369)
T ss_dssp             ESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEE
T ss_pred             eCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEE
Confidence            368999999999999988886 889999999999997666665          334444 3338889999999999 999


Q ss_pred             EEecCC-----CcEEEEecCCCc-----------ceeeecCCCC--CeEEEEEeeCCCEEEEeccCCcEEEEEcCC-Ccc
Q 038439           68 ASASTD-----STLRLWDVKENL-----------PVRTFRGHMN--EKNFVGLTVNSEYIACGSESNEVYVYHKEI-SKP  128 (179)
Q Consensus        68 ~~~~~d-----~~v~iwd~~~~~-----------~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~-~~~  128 (179)
                      ++++.+     +.|++||+....           .+..+..+..  .+.+++|+|+++++++++.|+.|++||+++ .+.
T Consensus       131 ~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  210 (369)
T 3zwl_B          131 LAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEY  210 (369)
T ss_dssp             EEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEE
T ss_pred             EEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEe
Confidence            999988     999999997653           3334444555  899999999999999999999999999998 555


Q ss_pred             ccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          129 VTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      +..+..            |...|.+++|+|++++|++++.|+.|++||+++
T Consensus       211 ~~~~~~------------~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~  249 (369)
T 3zwl_B          211 VDSIDL------------HEKSISDMQFSPDLTYFITSSRDTNSFLVDVST  249 (369)
T ss_dssp             EEEEEC------------CSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EEEEec------------CCCceeEEEECCCCCEEEEecCCceEEEEECCC
Confidence            544432            166899999999999999999999999999863

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=1.2e-26  Score=166.34  Aligned_cols=177  Identities=18%  Similarity=0.275  Sum_probs=134.3

Q ss_pred             CCCccEEEEEcCCcee-------EEee-cCCCceeEEEEcCCCCeEEEEe-----------CCC---cee--eecccCce
Q 038439            1 MAYGKVKVWCTRQEAS-------VLNI-DMKANICCVKYNPGSSNYIAKY-----------QST---APC--VHGHKKAV   56 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~-------~~~~-~~~~~v~~~~~~~~~~~~~~~~-----------~~~---~~~--~~~~~~~i   56 (179)
                      +.||+|++||+.++..       ...+ .|...|.+++|+|++..+++++           +..   +++  +..|...|
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  280 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV  280 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence            4689999999987321       2333 4888999999999655666665           222   333  67899999


Q ss_pred             eEEEEeeC-C-eEEEecCCCcEEEEecCC-CcceeeecCCCCCeEEEEEeeCCC-EEEEeccCCcEEEEEcCCCcccccc
Q 038439           57 SYVKFLSN-D-ELASASTDSTLRLWDVKE-NLPVRTFRGHMNEKNFVGLTVNSE-YIACGSESNEVYVYHKEISKPVTWH  132 (179)
Q Consensus        57 ~~~~~~~~-~-~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~v~vwd~~~~~~~~~~  132 (179)
                      ++++|+|+ . .+++++.|+.|++||++. ..++..+..|...|.+++|+|++. +|++++.|+.|++||+.........
T Consensus       281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  360 (430)
T 2xyi_A          281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST  360 (430)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH
T ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc
Confidence            99999998 4 688999999999999998 567888888999999999999985 6899999999999999873321100


Q ss_pred             c---cCCCCCCCCcccCCcceEEEEEEccCCC-eEEEEeCCCcEEEEeec
Q 038439          133 R---FSSPDMDDTDEDAGSYFISAVCWKSDSP-TMLTANSQGTIKVLVLA  178 (179)
Q Consensus       133 ~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~  178 (179)
                      .   .......... ..|...|.+++|+|+++ +|++++.||.|++|++.
T Consensus       361 ~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          361 EDAEDGPPELLFIH-GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             HHHHHCCTTEEEEC-CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             cccccCCcceEEEc-CCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence            0   0000000001 11267899999999999 89999999999999985

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.96  E-value=5.3e-27  Score=168.22  Aligned_cols=176  Identities=14%  Similarity=0.152  Sum_probs=130.4

Q ss_pred             CCCccEEEEEcCCce-----------eEEeec-CC------------CceeEEEEcCCC--CeEEEEeCCCce-------
Q 038439            1 MAYGKVKVWCTRQEA-----------SVLNID-MK------------ANICCVKYNPGS--SNYIAKYQSTAP-------   47 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~-----------~~~~~~-~~------------~~v~~~~~~~~~--~~~~~~~~~~~~-------   47 (179)
                      +.||.|+|||+.+++           ....+. |.            ..|.+++|+|++  ..+++++..+..       
T Consensus        47 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~  126 (447)
T 3dw8_B           47 DKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISE  126 (447)
T ss_dssp             ETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEE
T ss_pred             cCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEeccc
Confidence            468999999998776           355554 66            789999999997  556666511111       


Q ss_pred             --------------------------------------------e-eecccCceeEEEEeeC-CeEEEecCCCcEEEEec
Q 038439           48 --------------------------------------------C-VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDV   81 (179)
Q Consensus        48 --------------------------------------------~-~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~   81 (179)
                                                                  . ..+|...|.+++|+|+ .+|+++ .|+.|++||+
T Consensus       127 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~  205 (447)
T 3dw8_B          127 RDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHL  205 (447)
T ss_dssp             EEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEET
T ss_pred             ccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEEC
Confidence                                                        1 2579999999999999 888888 7999999999


Q ss_pred             CC-Cccee-------eecCCCCCeEEEEEeeCC-CEEEEeccCCcEEEEEcCCCcc----ccccccCCCCCCCCcccCCc
Q 038439           82 KE-NLPVR-------TFRGHMNEKNFVGLTVNS-EYIACGSESNEVYVYHKEISKP----VTWHRFSSPDMDDTDEDAGS  148 (179)
Q Consensus        82 ~~-~~~~~-------~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~v~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~  148 (179)
                      +. ++.+.       .+..|...|.+++|+|++ .+|++|+.|+.|++||+++++.    ...+..............|.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (447)
T 3dw8_B          206 EITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEII  285 (447)
T ss_dssp             TEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHT
T ss_pred             CCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccC
Confidence            84 33333       356788999999999998 9999999999999999998875    33322110000000000012


Q ss_pred             ceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          149 YFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       149 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ..|.+++|+|++++|++++. +.|++||++
T Consensus       286 ~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~  314 (447)
T 3dw8_B          286 SSISDVKFSHSGRYMMTRDY-LSVKVWDLN  314 (447)
T ss_dssp             TCEEEEEECTTSSEEEEEES-SEEEEEETT
T ss_pred             ceEEEEEECCCCCEEEEeeC-CeEEEEeCC
Confidence            38999999999999999999 999999986

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=5.9e-27  Score=168.71  Aligned_cols=143  Identities=15%  Similarity=0.146  Sum_probs=120.8

Q ss_pred             ceeEEEEcCCCCeEEEEe-----------C--CCcee--ee--cccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcc
Q 038439           25 NICCVKYNPGSSNYIAKY-----------Q--STAPC--VH--GHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLP   86 (179)
Q Consensus        25 ~v~~~~~~~~~~~~~~~~-----------~--~~~~~--~~--~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~   86 (179)
                      .|.+++|+|+++.+++++           .  .++.+  +.  .|...|.+++|+|+ .+|++++.++.+++|++.+++.
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~  183 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPE  183 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCC
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccc
Confidence            599999999997765655           3  44454  33  56788999999999 8999999999999999988765


Q ss_pred             ee----eecCCCCCeEEEEEeeC---CCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccC
Q 038439           87 VR----TFRGHMNEKNFVGLTVN---SEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD  159 (179)
Q Consensus        87 ~~----~~~~~~~~v~~~~~~~~---~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  159 (179)
                      ..    .+..|...|.+++|+|+   +++|++++.|+.|++||+++++.+..+..          . |...|.+++|+ +
T Consensus       184 ~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~----------~-h~~~v~~~~~s-d  251 (450)
T 2vdu_B          184 EKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLF----------G-HKHFVSSICCG-K  251 (450)
T ss_dssp             SSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECC----------C-CSSCEEEEEEC-S
T ss_pred             ccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeec----------C-CCCceEEEEEC-C
Confidence            44    67788999999999999   99999999999999999998876654321          1 26789999999 9


Q ss_pred             CCeEEEEeCCCcEEEEeecC
Q 038439          160 SPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       160 ~~~l~~~~~dg~i~iwd~~~  179 (179)
                      +++|++++.|+.|++||+++
T Consensus       252 ~~~l~s~~~d~~v~vwd~~~  271 (450)
T 2vdu_B          252 DYLLLSAGGDDKIFAWDWKT  271 (450)
T ss_dssp             TTEEEEEESSSEEEEEETTT
T ss_pred             CCEEEEEeCCCeEEEEECCC
Confidence            99999999999999999863

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.96  E-value=4.3e-27  Score=166.37  Aligned_cols=179  Identities=13%  Similarity=0.198  Sum_probs=137.8

Q ss_pred             CCCccEEEEEcCCcee-----EEeec-C-----CCceeEEEEc----CCCCe-EEEEe----------CC------Ccee
Q 038439            1 MAYGKVKVWCTRQEAS-----VLNID-M-----KANICCVKYN----PGSSN-YIAKY----------QS------TAPC   48 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~-----~~~~~-~-----~~~v~~~~~~----~~~~~-~~~~~----------~~------~~~~   48 (179)
                      +.||.|++||+.+++.     +..+. +     ...|.+++|+    |++.. +++++          ..      .+.+
T Consensus        88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  167 (397)
T 1sq9_A           88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  167 (397)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccccee
Confidence            3689999999998875     66665 5     4899999999    99976 55554          12      1111


Q ss_pred             -------e-------ecccCceeEEEEeeCCeEEEecCCCcEEEEecCCCcceeeecC---C---CCCeEEEEEeeCCCE
Q 038439           49 -------V-------HGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRG---H---MNEKNFVGLTVNSEY  108 (179)
Q Consensus        49 -------~-------~~~~~~i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~  108 (179)
                             +       ..|...|.+++|+|++.+++++.|+.|++||+++++.+..+..   |   ...+.+++|+|++++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~  247 (397)
T 1sq9_A          168 NWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL  247 (397)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE
T ss_pred             eccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCE
Confidence                   2       3478889999999988888999999999999999999999988   8   899999999999999


Q ss_pred             EEEeccC---CcEEEEEcCCCccccccccCCCCC-CCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          109 IACGSES---NEVYVYHKEISKPVTWHRFSSPDM-DDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       109 ~~~~~~d---~~v~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      |++++.|   +.|++||+++++.+..+....... .......|...|.+++|+|++++|++++.||.|++||+++
T Consensus       248 l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  322 (397)
T 1sq9_A          248 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT  322 (397)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             EEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            9999999   999999999988776554211000 0000000277899999999999999999999999999863

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.96  E-value=2.7e-27  Score=180.75  Aligned_cols=166  Identities=21%  Similarity=0.259  Sum_probs=144.4

Q ss_pred             CCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-CeE
Q 038439            2 AYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DEL   67 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~l   67 (179)
                      .||.|+|||+.+++.+..+. |..+|.+++|+|+++.+++++          .+++.+  +.+|...|.+++|+|+ ..+
T Consensus        33 ~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  112 (814)
T 3mkq_A           33 YSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYV  112 (814)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEE
T ss_pred             CCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEE
Confidence            58999999999999888886 889999999999997666665          344555  7889999999999999 899


Q ss_pred             EEecCCCcEEEEecCCC-cceeeecCCCCCeEEEEEee-CCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCccc
Q 038439           68 ASASTDSTLRLWDVKEN-LPVRTFRGHMNEKNFVGLTV-NSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDED  145 (179)
Q Consensus        68 ~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  145 (179)
                      ++++.|+.|++||+.++ .....+..|...+.+++|+| ++..+++++.|+.|++||+++++........          
T Consensus       113 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~----------  182 (814)
T 3mkq_A          113 LSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG----------  182 (814)
T ss_dssp             EEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECC----------
T ss_pred             EEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecC----------
Confidence            99999999999999886 66677888999999999999 8899999999999999999887766554421          


Q ss_pred             CCcceEEEEEEcc--CCCeEEEEeCCCcEEEEeec
Q 038439          146 AGSYFISAVCWKS--DSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       146 ~~~~~i~~~~~~~--~~~~l~~~~~dg~i~iwd~~  178 (179)
                       +...+..++|+|  +++++++++.||.|++||++
T Consensus       183 -~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~  216 (814)
T 3mkq_A          183 -QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ  216 (814)
T ss_dssp             -CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT
T ss_pred             -CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence             146789999999  99999999999999999975

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.96  E-value=2.4e-27  Score=167.30  Aligned_cols=165  Identities=12%  Similarity=0.114  Sum_probs=128.9

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CC----Ccee-eecccCceeEEEEee
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QS----TAPC-VHGHKKAVSYVKFLS   63 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~----~~~~-~~~~~~~i~~~~~~~   63 (179)
                      +.|+.|++||+. ++.+..+. |...|.+++|+|+++.+++++           +.    ...+ ..+|...|.+++|+|
T Consensus       182 ~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~  260 (383)
T 3ei3_B          182 DSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNP  260 (383)
T ss_dssp             ETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECT
T ss_pred             CCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcC
Confidence            368999999994 56666664 889999999999997455554           22    3344 447999999999999


Q ss_pred             -C-CeEEEecCCCcEEEEecCCCcceeeecCCC-----------------CCeEEEEEeeCCCEEEEeccCCcEEEEEcC
Q 038439           64 -N-DELASASTDSTLRLWDVKENLPVRTFRGHM-----------------NEKNFVGLTVNSEYIACGSESNEVYVYHKE  124 (179)
Q Consensus        64 -~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-----------------~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~  124 (179)
                       + .+|++++.|+.|++||+++++....+..|.                 ..+..++|+|++++  +++.|+.|++||++
T Consensus       261 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~  338 (383)
T 3ei3_B          261 TDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDAN  338 (383)
T ss_dssp             TTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETT
T ss_pred             CCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecC
Confidence             8 899999999999999999887766665432                 23444666777766  77899999999999


Q ss_pred             CCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          125 ISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      +++.+..+....          +...+..++|+|++++|++++ ||.|++||+++
T Consensus       339 ~~~~~~~l~~~~----------~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          339 SGGLVHQLRDPN----------AAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             TCCEEEEECBTT----------BCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             CCceeeeecCCC----------CCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            998876654321          155677789999999999997 99999999864

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.96  E-value=2.1e-26  Score=163.00  Aligned_cols=179  Identities=12%  Similarity=0.171  Sum_probs=138.7

Q ss_pred             CCCccEEEEEcCCceeEEeec--------------CCCceeEEEEcC-CCCeEEEEe----------CCCcee-eecccC
Q 038439            1 MAYGKVKVWCTRQEASVLNID--------------MKANICCVKYNP-GSSNYIAKY----------QSTAPC-VHGHKK   54 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~--------------~~~~v~~~~~~~-~~~~~~~~~----------~~~~~~-~~~~~~   54 (179)
                      +.||.|++||+.+++....+.              |...|.+++|+| ++..+++++          ..++.+ ...+..
T Consensus        63 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  142 (408)
T 4a11_B           63 GSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEE  142 (408)
T ss_dssp             ETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred             cCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCC
Confidence            468999999999876554443              888999999999 554444444          333344 344778


Q ss_pred             ceeEEEEeeC----CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCC-EEEEeccCCcEEEEEcCCCcc-
Q 038439           55 AVSYVKFLSN----DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE-YIACGSESNEVYVYHKEISKP-  128 (179)
Q Consensus        55 ~i~~~~~~~~----~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~v~vwd~~~~~~-  128 (179)
                      .+.++.++|.    .++++++.++.|++||+++++.+..+..|...|.+++|+|++. .+++++.|+.|++||++++.. 
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~  222 (408)
T 4a11_B          143 TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGC  222 (408)
T ss_dssp             CEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCC
T ss_pred             ceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcc
Confidence            8999999986    3899999999999999999999999999999999999999998 488999999999999988653 


Q ss_pred             ccccccCC---CCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          129 VTWHRFSS---PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       129 ~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      ...+....   ..........|...|.+++|+|++++|++++.||.|++||+++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~  276 (408)
T 4a11_B          223 LITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN  276 (408)
T ss_dssp             SEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             cccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence            22221110   0011111122377899999999999999999999999999863

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.3e-26  Score=157.66  Aligned_cols=163  Identities=13%  Similarity=0.228  Sum_probs=129.9

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-------------------------------------
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-------------------------------------   42 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-------------------------------------   42 (179)
                      +.||.|++||+.+++....+. |...|.+++|+|++..+++++                                     
T Consensus        36 ~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  115 (313)
T 3odt_A           36 SRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDG  115 (313)
T ss_dssp             ETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETT
T ss_pred             EcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCC
Confidence            468999999999888777665 788999999999996666555                                     


Q ss_pred             --------------CCCcee--eecccCceeEEEEee-C-CeEEEecCCCcEEEEecCCCcceeeecC-CCCCeEEEEEe
Q 038439           43 --------------QSTAPC--VHGHKKAVSYVKFLS-N-DELASASTDSTLRLWDVKENLPVRTFRG-HMNEKNFVGLT  103 (179)
Q Consensus        43 --------------~~~~~~--~~~~~~~i~~~~~~~-~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~  103 (179)
                                    +..+.+  +..|...+.++.|.| + ..+++++.|+.|++||  ..+....+.. +...+.+++|+
T Consensus       116 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~  193 (313)
T 3odt_A          116 VVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVV  193 (313)
T ss_dssp             EEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEE
T ss_pred             EEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEc
Confidence                          111111  445677777888877 5 7888888888888888  3445566665 78899999999


Q ss_pred             eCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          104 VNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       104 ~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      |++. +++++.|+.|++||+++++.+..+..            |...|.+++|+|++ .|++++.||.|++||+++
T Consensus       194 ~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~------------~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~  255 (313)
T 3odt_A          194 DDGH-FISCSNDGLIKLVDMHTGDVLRTYEG------------HESFVYCIKLLPNG-DIVSCGEDRTVRIWSKEN  255 (313)
T ss_dssp             ETTE-EEEEETTSEEEEEETTTCCEEEEEEC------------CSSCEEEEEECTTS-CEEEEETTSEEEEECTTT
T ss_pred             CCCe-EEEccCCCeEEEEECCchhhhhhhhc------------CCceEEEEEEecCC-CEEEEecCCEEEEEECCC
Confidence            9998 89999999999999999887766542            16789999999999 589999999999999763

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.96  E-value=1.9e-27  Score=170.52  Aligned_cols=157  Identities=13%  Similarity=0.229  Sum_probs=116.9

Q ss_pred             cCCCceeEEEEcCCCCeEEEEeCCC-----------cee---------eecccCceeEEEEeeC--CeEEEecCCCcEEE
Q 038439           21 DMKANICCVKYNPGSSNYIAKYQST-----------APC---------VHGHKKAVSYVKFLSN--DELASASTDSTLRL   78 (179)
Q Consensus        21 ~~~~~v~~~~~~~~~~~~~~~~~~~-----------~~~---------~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~i   78 (179)
                      .|...|.+++|+|++..+++ +..+           +.+         +.+|...|.+++|+|+  .+|++++.|+.|++
T Consensus       175 ~h~~~v~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i  253 (447)
T 3dw8_B          175 AHTYHINSISINSDYETYLS-ADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRL  253 (447)
T ss_dssp             CCSSCCCEEEECTTSSEEEE-ECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred             CCCcceEEEEEcCCCCEEEE-eCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEE
Confidence            48889999999999965544 5211           111         2378889999999998  68999999999999


Q ss_pred             EecCCCcc----eeeecCCCC------------CeEEEEEeeCCCEEEEeccCCcEEEEEcCC-CccccccccCCCCCCC
Q 038439           79 WDVKENLP----VRTFRGHMN------------EKNFVGLTVNSEYIACGSESNEVYVYHKEI-SKPVTWHRFSSPDMDD  141 (179)
Q Consensus        79 wd~~~~~~----~~~~~~~~~------------~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~~  141 (179)
                      ||+++++.    +..+..|..            .|.+++|+|++++|++++. +.|++||+++ ++++..+.........
T Consensus       254 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~  332 (447)
T 3dw8_B          254 CDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSK  332 (447)
T ss_dssp             EETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTT
T ss_pred             EECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccc
Confidence            99998876    677877765            8999999999999999998 9999999997 6666554431100000


Q ss_pred             C---cccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          142 T---DEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       142 ~---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      .   .....-..+..++|+|++++|++++.||.|++||+++
T Consensus       333 l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~  373 (447)
T 3dw8_B          333 LCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNT  373 (447)
T ss_dssp             HHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTT
T ss_pred             ccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCC
Confidence            0   0000001134599999999999999999999999863

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.96  E-value=1.1e-26  Score=184.23  Aligned_cols=178  Identities=16%  Similarity=0.175  Sum_probs=147.4

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC---
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN---   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~---   64 (179)
                      +.||+|++||+.+++.+..+. |...|.+++|+|++..+++++          .+++.+  +.+|...|.+++|+|+   
T Consensus       634 ~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  713 (1249)
T 3sfz_A          634 GADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNH  713 (1249)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSC
T ss_pred             eCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCc
Confidence            468999999999999988886 889999999999996666655          445555  7899999999999995   


Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCC------
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPD------  138 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~------  138 (179)
                      ..+++++.|+.|++||+++++.+..+.+|...|.+++|+|+++++++++.||.|++||+++++...........      
T Consensus       714 ~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  793 (1249)
T 3sfz_A          714 LLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDP  793 (1249)
T ss_dssp             CEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC------
T ss_pred             eEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCc
Confidence            57899999999999999999999999999999999999999999999999999999999887654433221100      


Q ss_pred             -------------------------------------CCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          139 -------------------------------------MDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       139 -------------------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                                                           ........|...+.+++|+|+++++++++.||.|++||+.
T Consensus       794 ~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~  870 (1249)
T 3sfz_A          794 PEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID  870 (1249)
T ss_dssp             --CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETT
T ss_pred             cccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Confidence                                                 0000011236678899999999999999999999999975

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.5e-27  Score=179.31  Aligned_cols=171  Identities=12%  Similarity=0.241  Sum_probs=138.1

Q ss_pred             CCCccEEEEEcCCce--eEEeec-CCCceeEEEEcCC--CCeEEEEe----------CCC---cee-eecccCceeEEEE
Q 038439            1 MAYGKVKVWCTRQEA--SVLNID-MKANICCVKYNPG--SSNYIAKY----------QST---APC-VHGHKKAVSYVKF   61 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~~~~~~----------~~~---~~~-~~~~~~~i~~~~~   61 (179)
                      +.||+|++||+.+++  .+..+. |..+|.+++|+|+  +..+++++          ...   ... +.+|...|.++.|
T Consensus        74 s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~  153 (753)
T 3jro_A           74 SYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW  153 (753)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEE
T ss_pred             eCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEe
Confidence            468999999999886  444444 8899999999999  75555555          112   122 6789999999999


Q ss_pred             ee-------------C-CeEEEecCCCcEEEEecCCC----cceeeecCCCCCeEEEEEeeC---CCEEEEeccCCcEEE
Q 038439           62 LS-------------N-DELASASTDSTLRLWDVKEN----LPVRTFRGHMNEKNFVGLTVN---SEYIACGSESNEVYV  120 (179)
Q Consensus        62 ~~-------------~-~~l~~~~~d~~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~d~~v~v  120 (179)
                      +|             + ..+++++.|+.|++||++++    .....+..|...|.+++|+|+   +.++++++.||.|++
T Consensus       154 ~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~i  233 (753)
T 3jro_A          154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII  233 (753)
T ss_dssp             CCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEE
T ss_pred             cCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEE
Confidence            99             6 89999999999999999876    455677889999999999999   899999999999999


Q ss_pred             EEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          121 YHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       121 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ||+++++..........       ..+...|++++|+|+++++++++.||.|++||++
T Consensus       234 wd~~~~~~~~~~~~~~~-------~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          234 WTQDNEQGPWKKTLLKE-------EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             EEESSSSSCCBCCBSSS-------SCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred             ecCCCCCCcceeEEecc-------CCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence            99998753221111110       1126789999999999999999999999999986

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.96  E-value=1.5e-26  Score=161.59  Aligned_cols=179  Identities=16%  Similarity=0.230  Sum_probs=129.0

Q ss_pred             CCCccEEEEEcCC-ceeE-Eee-cCCCceeEEEEcCCCCeEEEEe----------CCCcee-eecccCceeEEEE--eeC
Q 038439            1 MAYGKVKVWCTRQ-EASV-LNI-DMKANICCVKYNPGSSNYIAKY----------QSTAPC-VHGHKKAVSYVKF--LSN   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~-~~~~-~~~-~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~i~~~~~--~~~   64 (179)
                      +.||.|+|||+.+ ++.+ ..+ .|..+|.+++|+|++..+++++          ..++.+ +..|...|.+++|  +|+
T Consensus        61 ~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~  140 (368)
T 3mmy_A           61 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPN  140 (368)
T ss_dssp             ETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSS
T ss_pred             CCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCC
Confidence            3689999999987 5444 444 4899999999999997666665          344444 7789999999999  677


Q ss_pred             -CeEEEecCCCcEEEEecCCCcceeeecCCC-----------------------------------------CCeEEEEE
Q 038439           65 -DELASASTDSTLRLWDVKENLPVRTFRGHM-----------------------------------------NEKNFVGL  102 (179)
Q Consensus        65 -~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-----------------------------------------~~v~~~~~  102 (179)
                       .+|++++.|+.|++||+++++.+..+..+.                                         ....++.+
T Consensus       141 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (368)
T 3mmy_A          141 YSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAI  220 (368)
T ss_dssp             CEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEE
T ss_pred             CCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEE
Confidence             789999999999999999887766655432                                         23445555


Q ss_pred             eeCCCE----EEEeccCCcEEEEEcCCCcc-ccccccCCCC--CCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEE
Q 038439          103 TVNSEY----IACGSESNEVYVYHKEISKP-VTWHRFSSPD--MDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVL  175 (179)
Q Consensus       103 ~~~~~~----~~~~~~d~~v~vwd~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw  175 (179)
                      .++...    +++++.|+.|++||++.... .....+..+.  ........|...|.+++|+|++++|++++.||.|++|
T Consensus       221 ~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iw  300 (368)
T 3mmy_A          221 FKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW  300 (368)
T ss_dssp             EECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred             cccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEE
Confidence            555443    88999999999999987643 1112221110  0000001112369999999999999999999999999


Q ss_pred             eecC
Q 038439          176 VLAA  179 (179)
Q Consensus       176 d~~~  179 (179)
                      |+++
T Consensus       301 d~~~  304 (368)
T 3mmy_A          301 DKDA  304 (368)
T ss_dssp             ETTT
T ss_pred             ECCC
Confidence            9863

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.95  E-value=1.4e-26  Score=176.85  Aligned_cols=167  Identities=16%  Similarity=0.261  Sum_probs=143.4

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCC-cee--eecccCceeEEEEee-C-
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QST-APC--VHGHKKAVSYVKFLS-N-   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~-~~~--~~~~~~~i~~~~~~~-~-   64 (179)
                      +.||.|++||+.+++.+..+. |...|.+++|+|+++.+++++          ..+ ...  +.+|...|.+++|+| + 
T Consensus        74 ~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  153 (814)
T 3mkq_A           74 SDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP  153 (814)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEE
T ss_pred             eCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCC
Confidence            468999999999999888886 889999999999997666665          222 233  778999999999999 6 


Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCCC-CCeEEEEEee--CCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCC
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGHM-NEKNFVGLTV--NSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDD  141 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~--~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~  141 (179)
                      ..+++++.|+.|++||+.+++....+..+. ..+..++|+|  ++.++++++.|+.|++||+++++.+..+..       
T Consensus       154 ~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-------  226 (814)
T 3mkq_A          154 STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG-------  226 (814)
T ss_dssp             EEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEEC-------
T ss_pred             CEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcC-------
Confidence            899999999999999999887777776554 7899999999  899999999999999999999887665432       


Q ss_pred             CcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          142 TDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       142 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                           |...|.+++|+|+++++++++.||.|++||+.+
T Consensus       227 -----~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~  259 (814)
T 3mkq_A          227 -----HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST  259 (814)
T ss_dssp             -----CSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             -----CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence                 166899999999999999999999999999753

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.95  E-value=7.2e-26  Score=163.31  Aligned_cols=163  Identities=14%  Similarity=0.191  Sum_probs=136.6

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcC--CCCeEEEEe----------CCCc---------------------
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNP--GSSNYIAKY----------QSTA---------------------   46 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~~~~~~----------~~~~---------------------   46 (179)
                      +.||+|++||+.+++++..+. |...|.+++|++  ++..+++++          ....                     
T Consensus       180 s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (464)
T 3v7d_B          180 STDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN  259 (464)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGC
T ss_pred             eCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCC
Confidence            479999999999999988886 889999999984  554444444          1111                     


Q ss_pred             --ee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEE
Q 038439           47 --PC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVY  121 (179)
Q Consensus        47 --~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vw  121 (179)
                        .+  +.+|...+.++  +++ ..+++++.|+.|++||+++++.+..+..|...+.+++|+|+++++++|+.|+.|++|
T Consensus       260 ~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vw  337 (464)
T 3v7d_B          260 PYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW  337 (464)
T ss_dssp             TTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             eEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence              12  56777778776  566 899999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          122 HKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       122 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      |+++++++..+..  +          ...|.+++|+  +++|++++.||.|++||+++
T Consensus       338 d~~~~~~~~~~~~--h----------~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~  381 (464)
T 3v7d_B          338 DLENGELMYTLQG--H----------TALVGLLRLS--DKFLVSAAADGSIRGWDAND  381 (464)
T ss_dssp             ETTTTEEEEEECC--C----------SSCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred             ECCCCcEEEEEeC--C----------CCcEEEEEEc--CCEEEEEeCCCcEEEEECCC
Confidence            9999887766532  1          6789999997  58999999999999999863

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.95  E-value=9.1e-26  Score=167.34  Aligned_cols=162  Identities=10%  Similarity=0.154  Sum_probs=135.4

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeC-CCce------------e-eecccCceeEEEEeeC-CeE
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQ-STAP------------C-VHGHKKAVSYVKFLSN-DEL   67 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~------------~-~~~~~~~i~~~~~~~~-~~l   67 (179)
                      ++.+.+|+..+++.+..+.+...+.+++|+  +..+++++. .+..            . +.+|...|.+++|+|+ .+|
T Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  503 (615)
T 1pgu_A          426 DDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYI  503 (615)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEE
T ss_pred             CCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEE
Confidence            456666776678888888889999999999  544544443 3322            2 4568899999999999 999


Q ss_pred             EEecCCCcEEEEecCCCcceeeecC-CCCCeEEEEEee----------CCCEEEEeccCCcEEEEEcCCC-ccccccccC
Q 038439           68 ASASTDSTLRLWDVKENLPVRTFRG-HMNEKNFVGLTV----------NSEYIACGSESNEVYVYHKEIS-KPVTWHRFS  135 (179)
Q Consensus        68 ~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~----------~~~~~~~~~~d~~v~vwd~~~~-~~~~~~~~~  135 (179)
                      ++++.|+.|++||+.+++.+..+.. |...|.+++|+|          ++++|++++.|+.|++||++++ +++..+.  
T Consensus       504 ~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--  581 (615)
T 1pgu_A          504 AAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--  581 (615)
T ss_dssp             EEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT--
T ss_pred             EEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh--
Confidence            9999999999999999999988887 999999999999          9999999999999999999987 4444332  


Q ss_pred             CCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          136 SPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       136 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                               . |...|.+++|+|+++ |++++.||.|++|++++
T Consensus       582 ---------~-h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          582 ---------A-HKDGVNNLLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             ---------S-STTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             ---------c-CccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence                     1 277899999999999 99999999999999864

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.95  E-value=8.4e-27  Score=167.04  Aligned_cols=175  Identities=11%  Similarity=0.149  Sum_probs=134.0

Q ss_pred             CCCccEEEEEcCCceeEEeec---CCCceeEEEEcCCCCeEEEEe----------CCCcee--ee-cccCceeEEEEee-
Q 038439            1 MAYGKVKVWCTRQEASVLNID---MKANICCVKYNPGSSNYIAKY----------QSTAPC--VH-GHKKAVSYVKFLS-   63 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~-~~~~~i~~~~~~~-   63 (179)
                      +.||+|++||+++++++..+.   |...|++++|+|++..+++++          +.++++  +. .|..+|.+++|+| 
T Consensus       189 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  268 (437)
T 3gre_A          189 TNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQF  268 (437)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTT
T ss_pred             eCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccc
Confidence            368999999999999888885   678999999999996555555          334444  33 7778999997765 


Q ss_pred             ---C-CeEEEecCCCcEEEEecCCCcceeeecC--------------------------CCCCeEEEEEeeCCCEEEEec
Q 038439           64 ---N-DELASASTDSTLRLWDVKENLPVRTFRG--------------------------HMNEKNFVGLTVNSEYIACGS  113 (179)
Q Consensus        64 ---~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~--------------------------~~~~v~~~~~~~~~~~~~~~~  113 (179)
                         + .++++++.|+.|++||+++++.+..+..                          |...|.+++|+ ++++|++|+
T Consensus       269 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~  347 (437)
T 3gre_A          269 YGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDE  347 (437)
T ss_dssp             TCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEG
T ss_pred             cCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecC
Confidence               4 5899999999999999998887766653                          34457888999 778999999


Q ss_pred             cCCcEEEEEcCCCccccccccCC-------------------------CCCCCCcccCCcceEEEEEEccC--CCeEEEE
Q 038439          114 ESNEVYVYHKEISKPVTWHRFSS-------------------------PDMDDTDEDAGSYFISAVCWKSD--SPTMLTA  166 (179)
Q Consensus       114 ~d~~v~vwd~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~  166 (179)
                      .|+.|++||+++++....+....                         ..........|...|++++|+++  +.+|++|
T Consensus       348 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~  427 (437)
T 3gre_A          348 ATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVAC  427 (437)
T ss_dssp             GGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEE
T ss_pred             CCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEE
Confidence            99999999999987765543210                         00000111124788999999998  7899999


Q ss_pred             eCCCcEEEEe
Q 038439          167 NSQGTIKVLV  176 (179)
Q Consensus       167 ~~dg~i~iwd  176 (179)
                      +.||.|+||+
T Consensus       428 ~~dG~I~iw~  437 (437)
T 3gre_A          428 DNSGLIGIFQ  437 (437)
T ss_dssp             ETTSCEEEEC
T ss_pred             cCCceEEEeC
Confidence            9999999995

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.95  E-value=2.8e-26  Score=159.23  Aligned_cols=165  Identities=13%  Similarity=0.158  Sum_probs=134.7

Q ss_pred             CCCccEEEEEcCCce----eEEeecCCCceeEEEEcCCCC-eEEEEe--------C--CCcee--eec--ccCceeEEEE
Q 038439            1 MAYGKVKVWCTRQEA----SVLNIDMKANICCVKYNPGSS-NYIAKY--------Q--STAPC--VHG--HKKAVSYVKF   61 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~----~~~~~~~~~~v~~~~~~~~~~-~~~~~~--------~--~~~~~--~~~--~~~~i~~~~~   61 (179)
                      +.||.|+|||+.+++    ......|...|.+++|+|++. .+++++        +  .....  +.+  |...|.+++|
T Consensus        30 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~  109 (342)
T 1yfq_A           30 SWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICK  109 (342)
T ss_dssp             ETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEE
T ss_pred             cCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEe
Confidence            368999999998877    555557899999999999996 565555        1  22222  667  9999999999


Q ss_pred             eeCCeEEEecCCCcEEEEecCC---------CcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCC-Cccccc
Q 038439           62 LSNDELASASTDSTLRLWDVKE---------NLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEI-SKPVTW  131 (179)
Q Consensus        62 ~~~~~l~~~~~d~~v~iwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~-~~~~~~  131 (179)
                      +|...+++++.|+.|++||+++         ++++..+. +...+.+++|+|++  +++++.|+.|++||+++ +.....
T Consensus       110 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~  186 (342)
T 1yfq_A          110 YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGT  186 (342)
T ss_dssp             ETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCE
T ss_pred             CCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccce
Confidence            9878899999999999999987         77777776 78899999999887  89999999999999998 554322


Q ss_pred             cccCCCCCCCCcccCCcceEEEEEEcc-CCCeEEEEeCCCcEEEEeec
Q 038439          132 HRFSSPDMDDTDEDAGSYFISAVCWKS-DSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .....          +...+.+++|+| +++++++++.||.|++|+++
T Consensus       187 ~~~~~----------~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~  224 (342)
T 1yfq_A          187 IEESG----------LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD  224 (342)
T ss_dssp             EEECS----------CSSCEEEEEECSGGGCEEEEEETTSEEEEEECC
T ss_pred             eeecC----------CCCceeEEEECCCCCCEEEEEecCCcEEEEEEc
Confidence            22211          166799999999 99999999999999999975

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.95  E-value=6.8e-27  Score=185.38  Aligned_cols=166  Identities=14%  Similarity=0.226  Sum_probs=146.8

Q ss_pred             CCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee-eecccCceeEEEEeeCCeEEE
Q 038439            2 AYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC-VHGHKKAVSYVKFLSNDELAS   69 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~i~~~~~~~~~~l~~   69 (179)
                      .||.|++||+.+++....+. |...|.+++|+|+++.+++++          ..++.+ ...|...|.++.|+|++.+++
T Consensus       981 ~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ 1060 (1249)
T 3sfz_A          981 EDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLS 1060 (1249)
T ss_dssp             TTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEE
T ss_pred             CCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEE
Confidence            68999999999998887775 889999999999997777666          333444 668899999999999988999


Q ss_pred             ecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcc
Q 038439           70 ASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSY  149 (179)
Q Consensus        70 ~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (179)
                      ++.|+.|++||+.+++....+..|...|.+++|+|+++++++++.|+.|++||+.+++++..+..            |..
T Consensus      1061 ~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~------------h~~ 1128 (1249)
T 3sfz_A         1061 WSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKG------------HNG 1128 (1249)
T ss_dssp             EESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCC------------CSS
T ss_pred             EECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeecc------------CCC
Confidence            99999999999999999999999999999999999999999999999999999998887655431            267


Q ss_pred             eEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          150 FISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       150 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      .|++++|+|++++|++++.||.|++||+.+
T Consensus      1129 ~v~~~~~s~dg~~lat~~~dg~i~vwd~~~ 1158 (1249)
T 3sfz_A         1129 CVRCSAFSLDGILLATGDDNGEIRIWNVSD 1158 (1249)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCCCEEESSS
T ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            899999999999999999999999999863

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=5.5e-26  Score=172.73  Aligned_cols=169  Identities=13%  Similarity=0.150  Sum_probs=136.8

Q ss_pred             CCCccEEEEEcC--CceeEEeec-CCCceeEEEEcCC--CCeEEEEe----------CCCc--ee--eecccCceeEEEE
Q 038439            1 MAYGKVKVWCTR--QEASVLNID-MKANICCVKYNPG--SSNYIAKY----------QSTA--PC--VHGHKKAVSYVKF   61 (179)
Q Consensus         1 ~~d~~i~vwd~~--~~~~~~~~~-~~~~v~~~~~~~~--~~~~~~~~----------~~~~--~~--~~~~~~~i~~~~~   61 (179)
                      +.||+|+|||+.  +++.+..+. |.++|.+++|+|+  +..+++++          ..++  .+  +.+|...|.+++|
T Consensus        28 ~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~  107 (753)
T 3jro_A           28 SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQW  107 (753)
T ss_dssp             ETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE
T ss_pred             ECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEE
Confidence            469999999998  455666665 8899999999988  75555555          2332  33  6779999999999


Q ss_pred             eeC---CeEEEecCCCcEEEEecCCC--cceeeecCCCCCeEEEEEee-------------CCCEEEEeccCCcEEEEEc
Q 038439           62 LSN---DELASASTDSTLRLWDVKEN--LPVRTFRGHMNEKNFVGLTV-------------NSEYIACGSESNEVYVYHK  123 (179)
Q Consensus        62 ~~~---~~l~~~~~d~~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~-------------~~~~~~~~~~d~~v~vwd~  123 (179)
                      +|+   ..+++++.|+.|++||++.+  .....+..|...|.+++|+|             ++.++++|+.||.|++||+
T Consensus       108 sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~  187 (753)
T 3jro_A          108 APHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY  187 (753)
T ss_dssp             CCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEE
T ss_pred             CCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEec
Confidence            997   68999999999999999876  33456678899999999999             5899999999999999999


Q ss_pred             CCCccccc--cccCCCCCCCCcccCCcceEEEEEEccC---CCeEEEEeCCCcEEEEeecC
Q 038439          124 EISKPVTW--HRFSSPDMDDTDEDAGSYFISAVCWKSD---SPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       124 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~  179 (179)
                      +++.....  ..+..          |...|.+++|+|+   ++++++++.||.|++||+++
T Consensus       188 ~~~~~~~~~~~~~~~----------h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~  238 (753)
T 3jro_A          188 NSDAQTYVLESTLEG----------HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  238 (753)
T ss_dssp             ETTTTEEEEEEEECC----------CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred             cCCcccceeeeeecC----------CCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence            98743211  12221          2778999999999   89999999999999999863

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.95  E-value=1.3e-25  Score=155.55  Aligned_cols=158  Identities=16%  Similarity=0.224  Sum_probs=125.5

Q ss_pred             cCCCceeEEEEcCCCCeEEEEe----------CCC----cee--eecccCceeEEEEee--C-CeEEEecCCCcEEEEec
Q 038439           21 DMKANICCVKYNPGSSNYIAKY----------QST----APC--VHGHKKAVSYVKFLS--N-DELASASTDSTLRLWDV   81 (179)
Q Consensus        21 ~~~~~v~~~~~~~~~~~~~~~~----------~~~----~~~--~~~~~~~i~~~~~~~--~-~~l~~~~~d~~v~iwd~   81 (179)
                      .|.+.|++++|+|++..+++++          ..+    +.+  +.+|...|.+++|+|  + .+|++++.|+.|++||+
T Consensus         9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~   88 (351)
T 3f3f_A            9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEE   88 (351)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred             ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEec
Confidence            4889999999999996665555          211    222  678999999999999  5 89999999999999999


Q ss_pred             CCC---------cceeeecCCCCCeEEEEEeeC--CCEEEEeccCCcEEEEEcCCCccccccccCC--------------
Q 038439           82 KEN---------LPVRTFRGHMNEKNFVGLTVN--SEYIACGSESNEVYVYHKEISKPVTWHRFSS--------------  136 (179)
Q Consensus        82 ~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~--------------  136 (179)
                      +.+         +.+..+..|...+.+++|+|+  +.++++++.|+.|++||+++++.+..+....              
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (351)
T 3f3f_A           89 DPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQ  168 (351)
T ss_dssp             CTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSC
T ss_pred             CCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCccc
Confidence            876         457778889999999999999  9999999999999999998876554332100              


Q ss_pred             -------------C------------------CCC---CCcccCCcceEEEEEEccCC----CeEEEEeCCCcEEEEeec
Q 038439          137 -------------P------------------DMD---DTDEDAGSYFISAVCWKSDS----PTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       137 -------------~------------------~~~---~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~iwd~~  178 (179)
                                   .                  ...   ......|...|.+++|+|++    ++|++++.||.|++||++
T Consensus       169 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~  248 (351)
T 3f3f_A          169 SDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKIT  248 (351)
T ss_dssp             CCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEE
T ss_pred             ceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCC
Confidence                         0                  000   11112237789999999998    899999999999999985

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.95  E-value=1.4e-25  Score=155.75  Aligned_cols=174  Identities=16%  Similarity=0.089  Sum_probs=133.9

Q ss_pred             CCCccEEEEEc-CCceeEEeec--CCCceeEEEEcCCCCeEEEEe----------CC---------Ccee-eecccCcee
Q 038439            1 MAYGKVKVWCT-RQEASVLNID--MKANICCVKYNPGSSNYIAKY----------QS---------TAPC-VHGHKKAVS   57 (179)
Q Consensus         1 ~~d~~i~vwd~-~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~----------~~---------~~~~-~~~~~~~i~   57 (179)
                      +.||.|++||+ .+++......  |...|.+++|+| +..+++++          +.         .+++ ...|...|.
T Consensus        76 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  154 (342)
T 1yfq_A           76 TVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIF  154 (342)
T ss_dssp             ETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEE
T ss_pred             cCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceE
Confidence            36899999999 8887655556  889999999999 75666555          22         3334 223888999


Q ss_pred             EEEEeeCCeEEEecCCCcEEEEecCC-Ccc--eeeecCCCCCeEEEEEee-CCCEEEEeccCCcEEEEEcCCC------c
Q 038439           58 YVKFLSNDELASASTDSTLRLWDVKE-NLP--VRTFRGHMNEKNFVGLTV-NSEYIACGSESNEVYVYHKEIS------K  127 (179)
Q Consensus        58 ~~~~~~~~~l~~~~~d~~v~iwd~~~-~~~--~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~v~vwd~~~~------~  127 (179)
                      +++|+|+. +++++.|+.|++||+++ +..  ......+...+.+++|+| +++++++++.||.|++|+++..      +
T Consensus       155 ~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~  233 (342)
T 1yfq_A          155 TMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS  233 (342)
T ss_dssp             EEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred             EEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccc
Confidence            99999876 99999999999999987 542  334446778899999999 9999999999999999999876      4


Q ss_pred             cccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          128 PVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      ....+..  +....... .|...|.+++|+|++++|++++.||.|++||+++
T Consensus       234 ~~~~~~~--~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~  282 (342)
T 1yfq_A          234 KRFAFRC--HRLNLKDT-NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT  282 (342)
T ss_dssp             TCEEEEC--CCCCTTCC-SSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             cceeeec--cccccccc-ccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc
Confidence            4433332  11100001 1245899999999999999999999999999863

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.94  E-value=1.6e-25  Score=156.91  Aligned_cols=173  Identities=14%  Similarity=0.144  Sum_probs=128.6

Q ss_pred             CCccEEEEEcCCc-eeEEeecCCCceeEEEEcCCCCeEEEE-e-----------CCCc---------------e-e--ee
Q 038439            2 AYGKVKVWCTRQE-ASVLNIDMKANICCVKYNPGSSNYIAK-Y-----------QSTA---------------P-C--VH   50 (179)
Q Consensus         2 ~d~~i~vwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~-~-----------~~~~---------------~-~--~~   50 (179)
                      .|+.|++||+.++ +.+..+..  +...+++++  ..++++ |           ..++               + +  +.
T Consensus       117 ~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~  192 (355)
T 3vu4_A          117 YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK  192 (355)
T ss_dssp             ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEEC
T ss_pred             EcCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE
Confidence            3789999999988 66655554  555666776  245554 3           2221               1 3  88


Q ss_pred             cccCceeEEEEeeC-CeEEEecCCCc-EEEEecCCCcceeeec-C-CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCC
Q 038439           51 GHKKAVSYVKFLSN-DELASASTDST-LRLWDVKENLPVRTFR-G-HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEIS  126 (179)
Q Consensus        51 ~~~~~i~~~~~~~~-~~l~~~~~d~~-v~iwd~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~  126 (179)
                      +|...|.+++|+|+ .+|++++.|++ |++||+++++++..+. + |...|.+++|+|++++|++++.|+.|++||++..
T Consensus       193 ~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          193 AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             ccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            99999999999999 99999999998 9999999999999998 4 8999999999999999999999999999999875


Q ss_pred             ccccccccCCC-----CCCC------CcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          127 KPVTWHRFSSP-----DMDD------TDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       127 ~~~~~~~~~~~-----~~~~------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .......+...     ....      ............++|+++++.+++++.||.+++|++.
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~  335 (355)
T 3vu4_A          273 QDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVV  335 (355)
T ss_dssp             SCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEE
T ss_pred             CCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence            43221111110     0000      0000002223568999999999999999999999874

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.94  E-value=1.1e-24  Score=156.47  Aligned_cols=160  Identities=16%  Similarity=0.249  Sum_probs=130.9

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeCCeE
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSNDEL   67 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~~~l   67 (179)
                      +.||+|++||+.+++.+..+. |...|.+++|+++  .+++++          .+++.+  +.+|...|.++.|++ +.+
T Consensus       136 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~l  212 (445)
T 2ovr_B          136 SDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE-KRV  212 (445)
T ss_dssp             ETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TEE
T ss_pred             ECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCC--EEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecC-CEE
Confidence            468999999999999888886 8889999999842  444444          344455  778999999998854 689


Q ss_pred             EEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCC
Q 038439           68 ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAG  147 (179)
Q Consensus        68 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  147 (179)
                      ++++.|+.|++||+++++.+..+..|...+.++++  ++.++++++.|+.|++||+++++.+..+..  +          
T Consensus       213 ~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~----------  278 (445)
T 2ovr_B          213 VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQG--H----------  278 (445)
T ss_dssp             EEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECC--C----------
T ss_pred             EEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecC--C----------
Confidence            99999999999999999988899889999999888  788899999999999999998877655432  1          


Q ss_pred             cceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          148 SYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       148 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      ...|.+++|  +++++++++.||.|++||+++
T Consensus       279 ~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~  308 (445)
T 2ovr_B          279 TNRVYSLQF--DGIHVVSGSLDTSIRVWDVET  308 (445)
T ss_dssp             SSCEEEEEE--CSSEEEEEETTSCEEEEETTT
T ss_pred             CCceEEEEE--CCCEEEEEeCCCeEEEEECCC
Confidence            567888888  778888888888888888753

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.94  E-value=6e-25  Score=157.60  Aligned_cols=159  Identities=21%  Similarity=0.333  Sum_probs=133.4

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCce----e-eecccCceeEEEEeeC
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAP----C-VHGHKKAVSYVKFLSN   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~----~-~~~~~~~i~~~~~~~~   64 (179)
                      +.||+|++||+.+++.+..+. |...|.+++|+++  .+++++          ..++.    . +.+|...|.++.| ..
T Consensus       190 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~  266 (435)
T 1p22_A          190 SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-DD  266 (435)
T ss_dssp             ETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-ET
T ss_pred             cCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCC--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-CC
Confidence            468999999999999888886 7889999999853  455554          22221    1 6789999999998 23


Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE  144 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~  144 (179)
                      +.+++++.|+.|++||+++++.+..+..|...+.++++  ++.++++|+.|+.|++||+++++.+..+..          
T Consensus       267 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~----------  334 (435)
T 1p22_A          267 KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEG----------  334 (435)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECC----------
T ss_pred             CEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeC----------
Confidence            89999999999999999999999999999999999988  578999999999999999999887765542          


Q ss_pred             cCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          145 DAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       145 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                        |...|.+++|  ++++|++|+.||.|++||++
T Consensus       335 --h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~  364 (435)
T 1p22_A          335 --HEELVRCIRF--DNKRIVSGAYDGKIKVWDLV  364 (435)
T ss_dssp             --CSSCEEEEEC--CSSEEEEEETTSCEEEEEHH
T ss_pred             --CcCcEEEEEe--cCCEEEEEeCCCcEEEEECC
Confidence              1678999998  78999999999999999974

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.94  E-value=9.9e-26  Score=159.86  Aligned_cols=164  Identities=12%  Similarity=0.184  Sum_probs=111.1

Q ss_pred             CCCccEEEEEcCCceeEE-eecCCCceeEEEEcCCCCeEEEEe-----------CCCce---------------------
Q 038439            1 MAYGKVKVWCTRQEASVL-NIDMKANICCVKYNPGSSNYIAKY-----------QSTAP---------------------   47 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~---------------------   47 (179)
                      |+|++|+|||+.++.++. .+.|..+|.+++|+|++..+++++           ..++.                     
T Consensus       163 s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~  242 (393)
T 4gq1_A          163 GDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTL  242 (393)
T ss_dssp             ETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESG
T ss_pred             ECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccc
Confidence            579999999998776554 446899999999999987666666           11100                     


Q ss_pred             -----e-eecccCceeEEEEe-eC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEE------------------E
Q 038439           48 -----C-VHGHKKAVSYVKFL-SN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFV------------------G  101 (179)
Q Consensus        48 -----~-~~~~~~~i~~~~~~-~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~------------------~  101 (179)
                           . ..+|...+.++.|. |+ ..+++++.|+.+++||+..++....+..+...+..+                  .
T Consensus       243 ~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (393)
T 4gq1_A          243 PLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGAC  322 (393)
T ss_dssp             GGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCE
T ss_pred             cceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEE
Confidence                 0 24677889999987 56 899999999999999998876655554444333332                  2


Q ss_pred             Eee--CCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          102 LTV--NSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       102 ~~~--~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      ++|  ++.++++|+.|+.|++||+.+++.......           + ...|.+++|+|+|++|++++.+| +.+|.+
T Consensus       323 ~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~-----------~-~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          323 PHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ-----------L-GMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             ECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE-----------C-SSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             EccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC-----------C-CCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            333  344677888999999999998877654321           1 56899999999999999999776 656554

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.94  E-value=1.2e-24  Score=156.09  Aligned_cols=160  Identities=17%  Similarity=0.303  Sum_probs=133.9

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeCCeE
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSNDEL   67 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~~~l   67 (179)
                      +.||+|++||+.+++.+..+. |...|.+++|  ++..+++++          .+++.+  +.+|...|.+++|++ +.+
T Consensus       150 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~l  226 (435)
T 1p22_A          150 LRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN-GMM  226 (435)
T ss_dssp             ESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT-TEE
T ss_pred             eCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC-CEE
Confidence            468999999999999988886 8899999999  454454444          344555  778999999999965 699


Q ss_pred             EEecCCCcEEEEecCCCcce---eeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439           68 ASASTDSTLRLWDVKENLPV---RTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE  144 (179)
Q Consensus        68 ~~~~~d~~v~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~  144 (179)
                      ++++.|+.|++||+++++..   ..+.+|...|.+++|  +++++++|+.|+.|++||+++++.+..+..  +       
T Consensus       227 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~-------  295 (435)
T 1p22_A          227 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNG--H-------  295 (435)
T ss_dssp             EEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEEC--C-------
T ss_pred             EEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcC--C-------
Confidence            99999999999999987665   567788999999998  788999999999999999999887766542  1       


Q ss_pred             cCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          145 DAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       145 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                         ...|.++.|  +++++++|+.||.|++||+++
T Consensus       296 ---~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~  325 (435)
T 1p22_A          296 ---KRGIACLQY--RDRLVVSGSSDNTIRLWDIEC  325 (435)
T ss_dssp             ---SSCEEEEEE--ETTEEEEEETTSCEEEEETTT
T ss_pred             ---CCcEEEEEe--CCCEEEEEeCCCeEEEEECCC
Confidence               667888888  478999999999999999863

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.94  E-value=7.1e-25  Score=154.11  Aligned_cols=167  Identities=8%  Similarity=-0.004  Sum_probs=123.3

Q ss_pred             CCccEEEEEcCCceeE----Eeec------CCCceeEEEEcCCCCeEEEEe------------CCCcee-eecccCceeE
Q 038439            2 AYGKVKVWCTRQEASV----LNID------MKANICCVKYNPGSSNYIAKY------------QSTAPC-VHGHKKAVSY   58 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~----~~~~------~~~~v~~~~~~~~~~~~~~~~------------~~~~~~-~~~~~~~i~~   58 (179)
                      .|+++++|++.+.+..    ....      +...+.+++|+|||+.+++++            .+++++ ...|...|.+
T Consensus       102 ~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~  181 (365)
T 4h5i_A          102 GNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKD  181 (365)
T ss_dssp             CCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCE
T ss_pred             CCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEE
Confidence            5889999998754321    1111      334589999999997665443            334444 3357888999


Q ss_pred             EEEeeC-CeEEEecCCCcEEEEecCCCccee--eecCCCCCeEEEEEeeCCCEEEEeccCC----cEEEEEcCCCcccc-
Q 038439           59 VKFLSN-DELASASTDSTLRLWDVKENLPVR--TFRGHMNEKNFVGLTVNSEYIACGSESN----EVYVYHKEISKPVT-  130 (179)
Q Consensus        59 ~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~d~----~v~vwd~~~~~~~~-  130 (179)
                      ++|+|+ .++++++. +.+++|+..+++.+.  ....|...+.+++|+|+++++++++.|+    .+++|++....... 
T Consensus       182 v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~  260 (365)
T 4h5i_A          182 LHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVL  260 (365)
T ss_dssp             EEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEE
T ss_pred             EEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecce
Confidence            999999 88888875 456677777666543  3345778899999999999999998887    68889987654322 


Q ss_pred             -ccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          131 -WHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       131 -~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                       ...+..          |...|++++|+|+|++|++|+.|+.|+|||+++
T Consensus       261 ~~~~~~~----------~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~  300 (365)
T 4h5i_A          261 RSKQVTN----------RFKGITSMDVDMKGELAVLASNDNSIALVKLKD  300 (365)
T ss_dssp             EEEEEES----------SCSCEEEEEECTTSCEEEEEETTSCEEEEETTT
T ss_pred             eeeeecC----------CCCCeEeEEECCCCCceEEEcCCCEEEEEECCC
Confidence             222221          166899999999999999999999999999864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.94  E-value=2.4e-24  Score=152.14  Aligned_cols=165  Identities=10%  Similarity=0.058  Sum_probs=133.9

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-----------CCCcee-eecccCceeEEEEeeC-CeE
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-----------QSTAPC-VHGHKKAVSYVKFLSN-DEL   67 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~i~~~~~~~~-~~l   67 (179)
                      +.|++|++||+.+++.+..+.+...+.+++|+|++..+++++           .+++.+ ...+...+.+++|+|+ +.+
T Consensus         9 ~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l   88 (391)
T 1l0q_A            9 SESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQV   88 (391)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEE
T ss_pred             CCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEE
Confidence            468999999999999999998778899999999998776665           344444 2223348999999999 655


Q ss_pred             -EEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEE-EEeccCCcEEEEEcCCCccccccccCCCCCCCCccc
Q 038439           68 -ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI-ACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDED  145 (179)
Q Consensus        68 -~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  145 (179)
                       ++++.++.|++||+.+++.+..+.. ...+.+++|+|+++++ ++++.++.|++||+++++.+..+..           
T Consensus        89 ~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-----------  156 (391)
T 1l0q_A           89 YVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-----------  156 (391)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-----------
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec-----------
Confidence             5566789999999999988877765 4468999999999977 6888899999999999887766543           


Q ss_pred             CCcceEEEEEEccCCCeE-EEEeCCCcEEEEeecC
Q 038439          146 AGSYFISAVCWKSDSPTM-LTANSQGTIKVLVLAA  179 (179)
Q Consensus       146 ~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~  179 (179)
                        ...+..++|+|+++.+ ++++.++.|++||+++
T Consensus       157 --~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~  189 (391)
T 1l0q_A          157 --GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT  189 (391)
T ss_dssp             --CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             --CCCcceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence              3457899999999987 5677899999999863

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.94  E-value=7.2e-25  Score=151.91  Aligned_cols=165  Identities=21%  Similarity=0.260  Sum_probs=125.5

Q ss_pred             ceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CC-----Ccee--eecccCceeEEEEeeC-CeEEEecCC
Q 038439           14 EASVLNID-MKANICCVKYNPGSSNYIAKY-----------QS-----TAPC--VHGHKKAVSYVKFLSN-DELASASTD   73 (179)
Q Consensus        14 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~-----~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d   73 (179)
                      .++..++. |.+.|++++|+|++..++++|           ..     ..+.  +.+|...|.+++|+|+ .+|++++.|
T Consensus        28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d  107 (340)
T 4aow_A           28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD  107 (340)
T ss_dssp             EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc
Confidence            34455565 899999999999865666655           11     1122  6789999999999999 999999999


Q ss_pred             CcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccc-----------cC--CC---
Q 038439           74 STLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHR-----------FS--SP---  137 (179)
Q Consensus        74 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~-----------~~--~~---  137 (179)
                      +.|++|+............+...+..+.+++++.++++++.|+.+++||+..........           +.  ..   
T Consensus       108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  187 (340)
T 4aow_A          108 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI  187 (340)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCE
T ss_pred             ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcE
Confidence            999999999888777777778888888899999999999999999999976543221110           00  00   


Q ss_pred             ------------------CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          138 ------------------DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       138 ------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                                        ........ |...|++++|+|++++|++++.||.|++||+++
T Consensus       188 ~~s~~~d~~i~i~d~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~  246 (340)
T 4aow_A          188 IVSCGWDKLVKVWNLANCKLKTNHIG-HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE  246 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred             EEEEcCCCEEEEEECCCCceeeEecC-CCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc
Confidence                              00001122 367899999999999999999999999999863

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.94  E-value=3.3e-24  Score=154.05  Aligned_cols=167  Identities=15%  Similarity=0.257  Sum_probs=135.8

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeCCeE
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSNDEL   67 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~~~l   67 (179)
                      +.||.|++||+.+++++..+. |...|.+++|  ++..+++++          .+++++  +.+|...+.++.+.+ +.+
T Consensus       256 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~l  332 (445)
T 2ovr_B          256 AYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD-NIL  332 (445)
T ss_dssp             ETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET-TEE
T ss_pred             cCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeC-CEE
Confidence            368999999999998888886 7788999999  554555554          344555  778888888887643 799


Q ss_pred             EEecCCCcEEEEecCCCcceeeecC---CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439           68 ASASTDSTLRLWDVKENLPVRTFRG---HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE  144 (179)
Q Consensus        68 ~~~~~d~~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~  144 (179)
                      ++++.|+.|++||+++++.+..+..   |...|.+++|+  ++++++|+.||.|++||+++++.+..+.....       
T Consensus       333 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-------  403 (445)
T 2ovr_B          333 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLES-------  403 (445)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTT-------
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeecccc-------
Confidence            9999999999999999998888876   77889999985  68999999999999999999987766522110       


Q ss_pred             cCCcceEEEEEEccCCCeEEEEeCCCc----EEEEeecC
Q 038439          145 DAGSYFISAVCWKSDSPTMLTANSQGT----IKVLVLAA  179 (179)
Q Consensus       145 ~~~~~~i~~~~~~~~~~~l~~~~~dg~----i~iwd~~~  179 (179)
                      ..+...|++++|+|++.++++|+.||.    +.+||++.
T Consensus       404 ~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          404 GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             GGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence            112678999999999999999999998    99999863

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.94  E-value=4.4e-24  Score=150.82  Aligned_cols=164  Identities=10%  Similarity=0.076  Sum_probs=135.3

Q ss_pred             CCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-----------CCCcee-eecccCceeEEEEeeC-CeE-
Q 038439            2 AYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-----------QSTAPC-VHGHKKAVSYVKFLSN-DEL-   67 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~i~~~~~~~~-~~l-   67 (179)
                      .|++|++||+.+++.+..+.+...+.+++|+|+++.+++++           ..++.+ ...+...+.+++|+|+ +.+ 
T Consensus        52 ~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  131 (391)
T 1l0q_A           52 HSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLY  131 (391)
T ss_dssp             GGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEE
T ss_pred             CCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEE
Confidence            58999999999999999998777999999999998777766           233333 2234456899999999 655 


Q ss_pred             EEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEE-EEeccCCcEEEEEcCCCccccccccCCCCCCCCcccC
Q 038439           68 ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI-ACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDA  146 (179)
Q Consensus        68 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  146 (179)
                      ++++.++.|++||+.+++.+..+..+ ..+..++|+|+++++ ++++.++.|++||+++++.......            
T Consensus       132 ~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~------------  198 (391)
T 1l0q_A          132 VTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV------------  198 (391)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC------------
T ss_pred             EEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec------------
Confidence            78888999999999999888887754 456899999999887 5778899999999999877655543            


Q ss_pred             CcceEEEEEEccCCCeEEEEe---CCCcEEEEeecC
Q 038439          147 GSYFISAVCWKSDSPTMLTAN---SQGTIKVLVLAA  179 (179)
Q Consensus       147 ~~~~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~  179 (179)
                       ...+.+++|+|++++|++++   .++.|++||+++
T Consensus       199 -~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~  233 (391)
T 1l0q_A          199 -EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT  233 (391)
T ss_dssp             -SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred             -CCCccceEECCCCCEEEEEecCcCCCcEEEEECCC
Confidence             45789999999999999888   689999999763

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.94  E-value=5.3e-25  Score=153.78  Aligned_cols=164  Identities=15%  Similarity=0.152  Sum_probs=127.7

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEE--cCCCCeEEEEe----------CCCcee--eec---------------
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKY--NPGSSNYIAKY----------QSTAPC--VHG---------------   51 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~----------~~~~~~--~~~---------------   51 (179)
                      +.||.|++||+.+++.+....|..+|.+++|  +|++..+++++          +.++++  +..               
T Consensus       105 ~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (368)
T 3mmy_A          105 SCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAV  184 (368)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEE
T ss_pred             cCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeE
Confidence            4689999999999998888889999999999  88885555554          122221  111               


Q ss_pred             --------------------------ccCceeEEEEeeC-Ce----EEEecCCCcEEEEecCCC---cceeeecCCCC--
Q 038439           52 --------------------------HKKAVSYVKFLSN-DE----LASASTDSTLRLWDVKEN---LPVRTFRGHMN--   95 (179)
Q Consensus        52 --------------------------~~~~i~~~~~~~~-~~----l~~~~~d~~v~iwd~~~~---~~~~~~~~~~~--   95 (179)
                                                +...+.++.+.++ ..    +++++.|+.|++||++..   +.+..+..|..  
T Consensus       185 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  264 (368)
T 3mmy_A          185 VATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNG  264 (368)
T ss_dssp             EEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC-
T ss_pred             EEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccc
Confidence                                      1233455555555 33    999999999999999886   55667777665  


Q ss_pred             ----------CeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEE
Q 038439           96 ----------EKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLT  165 (179)
Q Consensus        96 ----------~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  165 (179)
                                .|.+++|+|++++|++++.||.|++||+++++++..+..  +          ...|.+++|+|++++|++
T Consensus       265 ~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~----------~~~v~~~~~s~~g~~l~~  332 (368)
T 3mmy_A          265 TNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ--L----------DQPISACCFNHNGNIFAY  332 (368)
T ss_dssp             ---CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC--C----------SSCEEEEEECTTSSCEEE
T ss_pred             ccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC--C----------CCCceEEEECCCCCeEEE
Confidence                      699999999999999999999999999999887765432  1          678999999999999999


Q ss_pred             EeCCCcEEEEe
Q 038439          166 ANSQGTIKVLV  176 (179)
Q Consensus       166 ~~~dg~i~iwd  176 (179)
                      ++.|+..+.|+
T Consensus       333 ~s~d~~~~~~~  343 (368)
T 3mmy_A          333 ASSYDWSKGHE  343 (368)
T ss_dssp             EECCCSTTCGG
T ss_pred             Eeccccccccc
Confidence            99987655443

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.6e-25  Score=162.45  Aligned_cols=159  Identities=9%  Similarity=0.054  Sum_probs=120.5

Q ss_pred             CccEEEEEcCCce--eEEeecCCCceeEEEEcCCCCeEEEEeCCCcee----------eecccC-----ceeEEEEeeC-
Q 038439            3 YGKVKVWCTRQEA--SVLNIDMKANICCVKYNPGSSNYIAKYQSTAPC----------VHGHKK-----AVSYVKFLSN-   64 (179)
Q Consensus         3 d~~i~vwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~-----~i~~~~~~~~-   64 (179)
                      ||+++.|++.+++  .+..+.+...|.+++|||+|..+++++..+...          +. |..     .+.+++|+|+ 
T Consensus        63 dg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG  141 (588)
T 2j04_A           63 LEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIE  141 (588)
T ss_dssp             CCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEEECSSS
T ss_pred             CCCcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEEEEEEcCCC
Confidence            3444555555444  233445678899999999997777666443332          34 555     4999999999 


Q ss_pred             CeEEEecCCCcEEEEecCCCcc-------eeee----cCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccc---c
Q 038439           65 DELASASTDSTLRLWDVKENLP-------VRTF----RGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPV---T  130 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~-------~~~~----~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~---~  130 (179)
                      ++|++|+.||+|++||+.+++.       +.++    .+|...|.+++|+|+|  +++++.|+.|++||+.+++..   .
T Consensus       142 ~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~  219 (588)
T 2j04_A          142 SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSR  219 (588)
T ss_dssp             SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEE
T ss_pred             CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcccccee
Confidence            9999999999999999998753       5665    5677899999999999  788888999999999887642   1


Q ss_pred             ccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          131 WHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .+. ..          |...|.+++|+  ++.|++++ +++|++||+.
T Consensus       220 tL~-~~----------h~~~V~svaFs--g~~LASa~-~~tIkLWd~~  253 (588)
T 2j04_A          220 MIQ-NA----------SRRKITDLKIV--DYKVVLTC-PGYVHKIDLK  253 (588)
T ss_dssp             EEE-CC----------CSSCCCCEEEE--TTEEEEEC-SSEEEEEETT
T ss_pred             eec-cc----------ccCcEEEEEEE--CCEEEEEe-CCeEEEEECC
Confidence            221 11          25679999999  68888887 6999999975

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.4e-24  Score=166.28  Aligned_cols=176  Identities=13%  Similarity=0.075  Sum_probs=133.4

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeC----------CCce------------e-eecccCcee
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQ----------STAP------------C-VHGHKKAVS   57 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----------~~~~------------~-~~~~~~~i~   57 (179)
                      +.|++|+|||+.+++++..+.+...|++++|+|++..+++++.          .++.            . ..+|..+|.
T Consensus        76 s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~  155 (902)
T 2oaj_A           76 NAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIV  155 (902)
T ss_dssp             ETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCC
T ss_pred             ECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeE
Confidence            4699999999999999998888899999999999965555542          2221            1 246888999


Q ss_pred             EEEEeeC--CeEEEecCCCcEEEEecCCCcceeeecCC------------------CCCeEEEEEeeCCCEEEEeccCCc
Q 038439           58 YVKFLSN--DELASASTDSTLRLWDVKENLPVRTFRGH------------------MNEKNFVGLTVNSEYIACGSESNE  117 (179)
Q Consensus        58 ~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~~~~~~~d~~  117 (179)
                      +++|+|+  +.+++++.|+.| +||+++++++..+..|                  ...|.+++|+|+|++|++++.|+.
T Consensus       156 sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~  234 (902)
T 2oaj_A          156 SIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS  234 (902)
T ss_dssp             EEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC
T ss_pred             EEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe
Confidence            9999996  789999999999 9999999888777654                  467999999999999999999999


Q ss_pred             EEEEEcCCCccccccccC---CCCCC-CCccc--CCcceEEEEEEcc----CC-CeEEEEeCC-----CcEEEEee
Q 038439          118 VYVYHKEISKPVTWHRFS---SPDMD-DTDED--AGSYFISAVCWKS----DS-PTMLTANSQ-----GTIKVLVL  177 (179)
Q Consensus       118 v~vwd~~~~~~~~~~~~~---~~~~~-~~~~~--~~~~~i~~~~~~~----~~-~~l~~~~~d-----g~i~iwd~  177 (179)
                      |++||+++++++....+.   .+... .....  .+...|.+++|++    ++ ..|++|+.+     ..+.+|++
T Consensus       235 i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~  310 (902)
T 2oaj_A          235 LVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL  310 (902)
T ss_dssp             EEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred             EEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence            999999998876532221   11000 00000  1255799999964    33 567777665     37888884

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.93  E-value=5.9e-25  Score=159.46  Aligned_cols=157  Identities=11%  Similarity=0.107  Sum_probs=119.1

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe----CCCc--eeee-cccCceeEEEEeeC-CeEEEecC
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY----QSTA--PCVH-GHKKAVSYVKFLSN-DELASAST   72 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~--~~~~-~~~~~i~~~~~~~~-~~l~~~~~   72 (179)
                      |.|++|+  |...++.+  -.|...|.+++|+|+|    ..+    ...+  .++. .|...|.+++|+|+ ..|++++.
T Consensus        34 s~D~TV~--d~~~~~~l--~gh~~~v~~V~FsPdg----~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~  105 (588)
T 2j04_A           34 FPDISIG--QPKYAKDI--NCNSKNLFHVKEFPLE----FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSN  105 (588)
T ss_dssp             SSSEEEE--EECCCSCC--SSBGGGTEEEEEECCC----CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEET
T ss_pred             cCCceee--ccccccee--cCCCccEEEEEECCCC----CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeC
Confidence            4678888  65555443  1478889999999988    122    1112  2222 56888999999999 89999999


Q ss_pred             CCcEEEEecCCCcceeeecCCCC-----CeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcc-------ccccccCCCCCC
Q 038439           73 DSTLRLWDVKENLPVRTFRGHMN-----EKNFVGLTVNSEYIACGSESNEVYVYHKEISKP-------VTWHRFSSPDMD  140 (179)
Q Consensus        73 d~~v~iwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~-------~~~~~~~~~~~~  140 (179)
                      ||.|++||...  ++..+. |..     .+.+++|+|||++|++|+.||.|++||+.++..       +..+....    
T Consensus       106 dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~----  178 (588)
T 2j04_A          106 NGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSD----  178 (588)
T ss_dssp             TSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSC----
T ss_pred             CCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccc----
Confidence            99999999654  566666 554     599999999999999999999999999998753       22221110    


Q ss_pred             CCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          141 DTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       141 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                         .+ |...|.+++|+|+|  +++++.|+.+++||+.
T Consensus       179 ---~g-h~~~V~sVawSPdg--Laass~D~tVrlWd~~  210 (588)
T 2j04_A          179 ---AG-SKDWVTHIVWYEDV--LVAALSNNSVFSMTVS  210 (588)
T ss_dssp             ---TT-CCCCEEEEEEETTE--EEEEETTCCEEEECCC
T ss_pred             ---cc-ccccEEEEEEcCCc--EEEEeCCCeEEEEECC
Confidence               12 26789999999999  8889999999999975

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.93  E-value=8.6e-25  Score=155.05  Aligned_cols=177  Identities=12%  Similarity=0.057  Sum_probs=115.0

Q ss_pred             CCCccEEEEEcCCceeEEe-----e-cCCCceeEEEEcC--------CCCeEEEEe-----------CCCcee--eeccc
Q 038439            1 MAYGKVKVWCTRQEASVLN-----I-DMKANICCVKYNP--------GSSNYIAKY-----------QSTAPC--VHGHK   53 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~-----~-~~~~~v~~~~~~~--------~~~~~~~~~-----------~~~~~~--~~~~~   53 (179)
                      +.|++|+|||..+++....     + .|.+.|++++|+|        ++ ++++++           ..+.++  +..|.
T Consensus       108 ~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~s~D~tv~~Wd~~~~~~~~~~~~~~  186 (393)
T 4gq1_A          108 CQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-QVIASVGDDCTLIIWRLTDEGPILAGYPLS  186 (393)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEEEETTSEEEEEEEETTEEEEEEEECS
T ss_pred             eCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCC-CEEEEEECCCeEEEEECCCCceeeeecCCC
Confidence            4699999999998765432     2 3889999999998        66 455555           233333  67788


Q ss_pred             CceeEEEEeeC--CeEEEecCCCcEEEEecCCCcceee-------------------------ecCCCCCeEEEEEe-eC
Q 038439           54 KAVSYVKFLSN--DELASASTDSTLRLWDVKENLPVRT-------------------------FRGHMNEKNFVGLT-VN  105 (179)
Q Consensus        54 ~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~-------------------------~~~~~~~v~~~~~~-~~  105 (179)
                      .++.+++|+|+  .+|++++.|++|++||+++++....                         ..+|...+.++.|+ |+
T Consensus       187 ~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~d  266 (393)
T 4gq1_A          187 SPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSD  266 (393)
T ss_dssp             SCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTT
T ss_pred             CCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCC
Confidence            99999999998  5899999999999999987653322                         12456678889887 79


Q ss_pred             CCEEEEeccCCcEEEEEcCCCccccccccCCCCCC-------CCcccCCcceEEEEEEcc--CCCeEEEEeCCCcEEEEe
Q 038439          106 SEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMD-------DTDEDAGSYFISAVCWKS--DSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       106 ~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~iwd  176 (179)
                      ++.+++++.|+.+++||+.+++....+........       ...... ........|+|  ++.++++|+.||.|++||
T Consensus       267 g~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd  345 (393)
T 4gq1_A          267 GSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISL-FPSLLGACPHPRYMDYFATAHSQHGLIQLIN  345 (393)
T ss_dssp             TCEEEEECTTSEEEEEEC-------------------CCSCSEEEECS-SCCSSCCEECSSCTTEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccc-cCcceeEEEccCCCCEEEEEECCCCEEEEEE
Confidence            99999999999999999988765443321100000       000000 11112233444  444677788999999999


Q ss_pred             ecC
Q 038439          177 LAA  179 (179)
Q Consensus       177 ~~~  179 (179)
                      +.+
T Consensus       346 ~~~  348 (393)
T 4gq1_A          346 TYE  348 (393)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            753

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.92  E-value=7.8e-23  Score=146.19  Aligned_cols=164  Identities=10%  Similarity=0.084  Sum_probs=134.0

Q ss_pred             CCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeC------------------CCcee-eecccCceeEEEEe
Q 038439            2 AYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQ------------------STAPC-VHGHKKAVSYVKFL   62 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------------~~~~~-~~~~~~~i~~~~~~   62 (179)
                      .|+.|++||+.+++.+..+.....+.+++|+|++..+++++.                  .++.+ ...|...+.+++|+
T Consensus       232 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~  311 (433)
T 3bws_A          232 ISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSG  311 (433)
T ss_dssp             TTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEEC
T ss_pred             CCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEEC
Confidence            589999999999999888888888999999999977766651                  12222 33455678899999


Q ss_pred             eC-C-eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc---------------CCcEEEEEcCC
Q 038439           63 SN-D-ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE---------------SNEVYVYHKEI  125 (179)
Q Consensus        63 ~~-~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---------------d~~v~vwd~~~  125 (179)
                      |+ + .+++++.++.|++||+.+++.+..+. +...+.+++|+|+++++++++.               ||.|++||+.+
T Consensus       312 ~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~  390 (433)
T 3bws_A          312 NTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT  390 (433)
T ss_dssp             SSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred             CCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence            99 5 45667899999999999988877775 5677899999999998888776               57999999999


Q ss_pred             CccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEeecC
Q 038439          126 SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVLAA  179 (179)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~  179 (179)
                      ++.+..+..             ...+..++|+|++++|++++. |+.|++|+++.
T Consensus       391 ~~~~~~~~~-------------~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          391 DTVKEFWEA-------------GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             TEEEEEEEC-------------SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             CcEEEEecC-------------CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            887766543             446899999999999988875 99999999863

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.91  E-value=5.2e-22  Score=141.93  Aligned_cols=164  Identities=12%  Similarity=0.052  Sum_probs=131.2

Q ss_pred             CCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee-eecccCceeEEEEeeC-CeE
Q 038439            2 AYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC-VHGHKKAVSYVKFLSN-DEL   67 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~i~~~~~~~~-~~l   67 (179)
                      .|+.|++||+.+++.+..+. +...+.+++|+|++..+++++           ..++.+ ...+...+.+++|+|+ ..+
T Consensus       189 ~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l  268 (433)
T 3bws_A          189 QANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKEL  268 (433)
T ss_dssp             GGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEE
T ss_pred             CCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEE
Confidence            57999999999998888876 778899999999998777766           233333 2223456899999999 788


Q ss_pred             EEec--------CCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEE-EEeccCCcEEEEEcCCCccccccccCCCC
Q 038439           68 ASAS--------TDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI-ACGSESNEVYVYHKEISKPVTWHRFSSPD  138 (179)
Q Consensus        68 ~~~~--------~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~d~~v~vwd~~~~~~~~~~~~~~~~  138 (179)
                      ++++        .|+.|++||+++++.+..+. +...+..++|+|+++.+ ++++.++.|++||+++++....+..    
T Consensus       269 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~----  343 (433)
T 3bws_A          269 YIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPV----  343 (433)
T ss_dssp             EEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEEC----
T ss_pred             EEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecC----
Confidence            8877        58899999999887766653 45578899999999754 6668899999999998877665543    


Q ss_pred             CCCCcccCCcceEEEEEEccCCCeEEEEeC---------------CCcEEEEeecC
Q 038439          139 MDDTDEDAGSYFISAVCWKSDSPTMLTANS---------------QGTIKVLVLAA  179 (179)
Q Consensus       139 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~  179 (179)
                               ...+.+++|+|+++++++++.               ||.|++||+++
T Consensus       344 ---------~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~  390 (433)
T 3bws_A          344 ---------FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT  390 (433)
T ss_dssp             ---------SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred             ---------CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence                     556889999999999988877               57999999753

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.91  E-value=1.2e-21  Score=139.94  Aligned_cols=162  Identities=15%  Similarity=0.088  Sum_probs=123.9

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-------------CCCcee-eecccCceeEEEEeeC-CeEE
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-------------QSTAPC-VHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      ++|++||+..........|...+.+++|+|+|+.++.++             .+++.. +..|...+.+++|+|+ ..|+
T Consensus       159 ~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la  238 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA  238 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             ceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEE
Confidence            799999998655544446888999999999997776665             223333 5667788999999999 6666


Q ss_pred             -EecCCCc--EEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc-CC--cEEEEEcCCCccccccccCCCCCCCC
Q 038439           69 -SASTDST--LRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE-SN--EVYVYHKEISKPVTWHRFSSPDMDDT  142 (179)
Q Consensus        69 -~~~~d~~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~--~v~vwd~~~~~~~~~~~~~~~~~~~~  142 (179)
                       +++.++.  |++||+.+++. ..+..+...+.+++|+|+|++|++++. ++  .|.+||+.+++.... ..  +     
T Consensus       239 ~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l-~~--~-----  309 (415)
T 2hqs_A          239 FALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI-TW--E-----  309 (415)
T ss_dssp             EEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC-CC--S-----
T ss_pred             EEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEE-ec--C-----
Confidence             6666654  99999988765 566677888999999999999887775 44  677889887764321 11  1     


Q ss_pred             cccCCcceEEEEEEccCCCeEEEEeCC---CcEEEEeecC
Q 038439          143 DEDAGSYFISAVCWKSDSPTMLTANSQ---GTIKVLVLAA  179 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~  179 (179)
                           ...+..++|+|+|++|++++.+   ..|++||+++
T Consensus       310 -----~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~  344 (415)
T 2hqs_A          310 -----GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT  344 (415)
T ss_dssp             -----SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred             -----CCcccCeEECCCCCEEEEEECcCCceEEEEEECCC
Confidence                 4578899999999999988764   5899999753

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.89  E-value=7.9e-22  Score=135.43  Aligned_cols=165  Identities=10%  Similarity=0.055  Sum_probs=121.9

Q ss_pred             CccEEEEEcCCc---eeEEeec-CCCceeEEEEcCCCCeEEEEe---------------CC----Ccee-eecccCceeE
Q 038439            3 YGKVKVWCTRQE---ASVLNID-MKANICCVKYNPGSSNYIAKY---------------QS----TAPC-VHGHKKAVSY   58 (179)
Q Consensus         3 d~~i~vwd~~~~---~~~~~~~-~~~~v~~~~~~~~~~~~~~~~---------------~~----~~~~-~~~~~~~i~~   58 (179)
                      ...|++|+..++   +++++.. +..+|..+.+.|+..+++.++               ..    ++.+ ..+|...|..
T Consensus        62 ~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~  141 (356)
T 2w18_A           62 EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLG  141 (356)
T ss_dssp             SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEE
T ss_pred             cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEe
Confidence            467999999988   7888887 566899999999877776665               11    2222 3345544544


Q ss_pred             EEEeeCCeEEEec---CCCcEEEEecC-CCcceeeecCCCCCeEEEEEee---CCCEEEEeccCCcEEEEEcCCCccccc
Q 038439           59 VKFLSNDELASAS---TDSTLRLWDVK-ENLPVRTFRGHMNEKNFVGLTV---NSEYIACGSESNEVYVYHKEISKPVTW  131 (179)
Q Consensus        59 ~~~~~~~~l~~~~---~d~~v~iwd~~-~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~d~~v~vwd~~~~~~~~~  131 (179)
                      +   +++.++.++   .|+.|++|++. +++.+..+..|...+..++|+|   ++..|++++.|++|++||+++++.+..
T Consensus       142 l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~t  218 (356)
T 2w18_A          142 L---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKK  218 (356)
T ss_dssp             E---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             c---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEE
Confidence            3   445555544   49999999994 4888888888999999999999   779999999999999999999998877


Q ss_pred             cccCCCCCCCCcccCCcceEEEEEEccCCCeE------------EEEeCCCcEEEEeecC
Q 038439          132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTM------------LTANSQGTIKVLVLAA  179 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l------------~~~~~dg~i~iwd~~~  179 (179)
                      +.....         +...+.+++|+|+|+++            ++|+.|++|++||..+
T Consensus       219 L~g~~~---------~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t  269 (356)
T 2w18_A          219 MHIDDS---------YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT  269 (356)
T ss_dssp             EECCC------------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT
T ss_pred             EcCCCc---------ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence            652110         03367788999999876            5678899999999753

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=5.6e-22  Score=142.25  Aligned_cols=153  Identities=15%  Similarity=0.133  Sum_probs=114.6

Q ss_pred             ecCCCceeEEEEcCCCCeEEE---Ee-----------CCC--------ce---e--eecccCceeEEEEeeC--CeEEEe
Q 038439           20 IDMKANICCVKYNPGSSNYIA---KY-----------QST--------AP---C--VHGHKKAVSYVKFLSN--DELASA   70 (179)
Q Consensus        20 ~~~~~~v~~~~~~~~~~~~~~---~~-----------~~~--------~~---~--~~~~~~~i~~~~~~~~--~~l~~~   70 (179)
                      +.+...|.+++|+|+++.+++   ++           ...        ++   +  +.+|...|.+++|+|+  .+|+++
T Consensus        89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~  168 (434)
T 2oit_A           89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC  168 (434)
T ss_dssp             ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred             ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence            446678999999999966664   44           111        11   2  5679999999999997  789999


Q ss_pred             cCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcce
Q 038439           71 STDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYF  150 (179)
Q Consensus        71 ~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (179)
                      +.|++|++||++++..+.....|...+.+++|+|+|++|++|+.||.|++||++ ++....+.....     ....|...
T Consensus       169 s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~-----~~~~~~~~  242 (434)
T 2oit_A          169 LADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPF-----YESDHPVR  242 (434)
T ss_dssp             ETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTT-----CCTTSCEE
T ss_pred             ECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcc-----cCCCCcee
Confidence            999999999999887666666788899999999999999999999999999998 444333221100     00111458


Q ss_pred             EEEEEEccCCCeEEE-EeCCC------cEEEEeec
Q 038439          151 ISAVCWKSDSPTMLT-ANSQG------TIKVLVLA  178 (179)
Q Consensus       151 i~~~~~~~~~~~l~~-~~~dg------~i~iwd~~  178 (179)
                      +.+++|++++.++++ .+.+|      .+++|+++
T Consensus       243 v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~  277 (434)
T 2oit_A          243 VLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLP  277 (434)
T ss_dssp             EEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECC
T ss_pred             EEEEEEecCceEEEEEccCCCccCCCCceEEEEec
Confidence            999999998887754 33343      38899975

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.89  E-value=4.9e-21  Score=136.74  Aligned_cols=160  Identities=8%  Similarity=0.092  Sum_probs=124.2

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-------------CCCcee-eecccCceeEEEEeeC-CeEE
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-------------QSTAPC-VHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      ..|++||+.+++......+...+.+++|+|+|+.++.++             ..++.. +..|...+.+++|+|+ ..|+
T Consensus       203 ~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~  282 (415)
T 2hqs_A          203 SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLA  282 (415)
T ss_dssp             CEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEE
T ss_pred             cEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEE
Confidence            489999999998876666888999999999997777454             222233 5667788999999999 7787


Q ss_pred             EecC-CC--cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccC---CcEEEEEcCCCccccccccCCCCCCCC
Q 038439           69 SAST-DS--TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSES---NEVYVYHKEISKPVTWHRFSSPDMDDT  142 (179)
Q Consensus        69 ~~~~-d~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d---~~v~vwd~~~~~~~~~~~~~~~~~~~~  142 (179)
                      +++. ++  .|.+||+.+++. ..+..+...+..++|+|+|++|++++.+   ..|.+||+.+++.... ..        
T Consensus       283 ~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l-~~--------  352 (415)
T 2hqs_A          283 FTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL-SS--------  352 (415)
T ss_dssp             EEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC-CC--------
T ss_pred             EEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEe-cC--------
Confidence            7775 44  677789887764 4455566778899999999999888764   5899999998776322 11        


Q ss_pred             cccCCcceEEEEEEccCCCeEEEEeCCC---cEEEEeec
Q 038439          143 DEDAGSYFISAVCWKSDSPTMLTANSQG---TIKVLVLA  178 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~  178 (179)
                           ...+..++|+|+|++|++++.++   .|++||+.
T Consensus       353 -----~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~  386 (415)
T 2hqs_A          353 -----TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD  386 (415)
T ss_dssp             -----SSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             -----CCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence                 22688899999999999988877   79999864

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=2.5e-22  Score=144.06  Aligned_cols=143  Identities=12%  Similarity=0.115  Sum_probs=111.6

Q ss_pred             CceeEEEEcCCCCeEEEEeCCCcee--------------------------eecccCceeEEEEeeC-CeEE----EecC
Q 038439           24 ANICCVKYNPGSSNYIAKYQSTAPC--------------------------VHGHKKAVSYVKFLSN-DELA----SAST   72 (179)
Q Consensus        24 ~~v~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~i~~~~~~~~-~~l~----~~~~   72 (179)
                      ..+..+++++++..+++++..+-.+                          ...+...|.+++|+|+ .+|+    +++.
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~  116 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEY  116 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTT
T ss_pred             CCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCC
Confidence            4588999999886665555211110                          1123456999999999 8888    7899


Q ss_pred             CCcEEEEecCCC--------cc---eeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCccccccccCCCCCC
Q 038439           73 DSTLRLWDVKEN--------LP---VRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMD  140 (179)
Q Consensus        73 d~~v~iwd~~~~--------~~---~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~  140 (179)
                      |+.|++||+.+.        +.   +..+.+|...|.+++|+|+ +.+|++++.||.|++||++++.......       
T Consensus       117 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~-------  189 (434)
T 2oit_A          117 GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL-------  189 (434)
T ss_dssp             EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE-------
T ss_pred             CceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc-------
Confidence            999999998654        22   3455668889999999998 8899999999999999999875442221       


Q ss_pred             CCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          141 DTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       141 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                          . |...|.+++|+|+|++|++|+.||.|++||++
T Consensus       190 ----~-~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          190 ----P-STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             ----C-GGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             ----C-CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence                1 16689999999999999999999999999975

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.87  E-value=1.8e-20  Score=128.72  Aligned_cols=139  Identities=19%  Similarity=0.295  Sum_probs=114.9

Q ss_pred             eeEEEEcCCCCeEEEEe----------CCCcee----eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeee
Q 038439           26 ICCVKYNPGSSNYIAKY----------QSTAPC----VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTF   90 (179)
Q Consensus        26 v~~~~~~~~~~~~~~~~----------~~~~~~----~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~   90 (179)
                      .+.|+||+++  ++++|          .+++.+    ..+|...|++++|+|+ +++++|+.|+.|++||+++++.+..+
T Consensus        28 ~~~l~WS~~~--~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~  105 (318)
T 4ggc_A           28 LNLVDWSSGN--VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  105 (318)
T ss_dssp             CBCEEECTTS--EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceEEEECCCC--EEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence            5779999885  66666          455554    4578889999999999 99999999999999999999999999


Q ss_pred             cCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCC
Q 038439           91 RGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG  170 (179)
Q Consensus        91 ~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  170 (179)
                      ..|...+.+  +++++..+++++.++.+++|+.......... ...          |...+..+.+.++++++++++.|+
T Consensus       106 ~~h~~~~~~--~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~~~l~s~~~d~  172 (318)
T 4ggc_A          106 TSHSARVGS--LSWNSYILSSGSRSGHIHHHDVRVAEHHVAT-LSG----------HSQEVCGLRWAPDGRHLASGGNDN  172 (318)
T ss_dssp             ECCSSCEEE--EEEETTEEEEEETTSEEEEEETTSSSCEEEE-EEC----------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cCccceEEE--eecCCCEEEEEecCCceEeeecCCCceeEEE-EcC----------ccCceEEEEEcCCCCEEEEEecCc
Confidence            998887755  4556789999999999999998876543222 111          166799999999999999999999


Q ss_pred             cEEEEeecC
Q 038439          171 TIKVLVLAA  179 (179)
Q Consensus       171 ~i~iwd~~~  179 (179)
                      .|++||+++
T Consensus       173 ~i~iwd~~~  181 (318)
T 4ggc_A          173 LVNVWPSAP  181 (318)
T ss_dssp             CEEEEESSC
T ss_pred             ceeEEECCC
Confidence            999999863

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.87  E-value=2.6e-20  Score=133.06  Aligned_cols=138  Identities=18%  Similarity=0.293  Sum_probs=115.2

Q ss_pred             eeEEEEcCCCCeEEEEe----------CCCcee----eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeee
Q 038439           26 ICCVKYNPGSSNYIAKY----------QSTAPC----VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTF   90 (179)
Q Consensus        26 v~~~~~~~~~~~~~~~~----------~~~~~~----~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~   90 (179)
                      ++.|+|++++  ++++|          .+++.+    +.+|...|++++|+|+ .+|++|+.|+.|++||+.+++.+..+
T Consensus       108 ~~~l~wS~~n--~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~  185 (420)
T 4gga_A          108 LNLVDWSSGN--VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  185 (420)
T ss_dssp             CBCEEECTTS--EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ceeEEECCCC--EEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE
Confidence            5679999764  67777          445544    4578889999999999 99999999999999999999999999


Q ss_pred             cCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCC
Q 038439           91 RGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG  170 (179)
Q Consensus        91 ~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  170 (179)
                      .+|...+.++++  ++.++++|+.|+.+++||.+....... .+..          |...+..+.|+|+++++++++.|+
T Consensus       186 ~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~-~~~~----------h~~~~~~~~~~~~g~~l~s~~~D~  252 (420)
T 4gga_A          186 TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVA-TLSG----------HSQEVCGLRWAPDGRHLASGGNDN  252 (420)
T ss_dssp             CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE-EEEC----------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeE-Eecc----------cccceeeeeecCCCCeeeeeeccc
Confidence            999998887766  578999999999999999987544322 1211          267899999999999999999999


Q ss_pred             cEEEEeec
Q 038439          171 TIKVLVLA  178 (179)
Q Consensus       171 ~i~iwd~~  178 (179)
                      .+++|++.
T Consensus       253 ~v~i~~~~  260 (420)
T 4gga_A          253 LVNVWPSA  260 (420)
T ss_dssp             CEEEEESS
T ss_pred             cceEEeec
Confidence            99999975

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.86  E-value=1.1e-19  Score=123.22  Aligned_cols=163  Identities=8%  Similarity=0.086  Sum_probs=118.8

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe---------CC-Ccee--eecc-cCceeEEEEeeC-Ce
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY---------QS-TAPC--VHGH-KKAVSYVKFLSN-DE   66 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------~~-~~~~--~~~~-~~~i~~~~~~~~-~~   66 (179)
                      +.|++|++||+.+++......+...|.+++|+|++..+++.+         .. ++..  ...+ ...+.+++|+|+ ..
T Consensus        19 ~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~   98 (297)
T 2ojh_A           19 SMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGAL   98 (297)
T ss_dssp             CCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSE
T ss_pred             CcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCE
Confidence            468999999999998887778899999999999997666554         33 3333  3344 367889999999 88


Q ss_pred             EEEec--CCCcEEEEe--cCCCcceeeecCCCCCeEEEEEeeCCCEEE-EeccCCcEEEEEcCC--CccccccccCCCCC
Q 038439           67 LASAS--TDSTLRLWD--VKENLPVRTFRGHMNEKNFVGLTVNSEYIA-CGSESNEVYVYHKEI--SKPVTWHRFSSPDM  139 (179)
Q Consensus        67 l~~~~--~d~~v~iwd--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~d~~v~vwd~~~--~~~~~~~~~~~~~~  139 (179)
                      +++++  .++..++|.  ...++ ...+..+ ..+..++|+|++++++ ++..++.+++|++..  ++.. .+.  .+  
T Consensus        99 l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~-~~~--~~--  171 (297)
T 2ojh_A           99 YAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET-RLT--HG--  171 (297)
T ss_dssp             EEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE-ECC--CS--
T ss_pred             EEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcce-Ecc--cC--
Confidence            88888  334555554  44444 3444433 3488899999999877 777899999998643  3322 111  11  


Q ss_pred             CCCcccCCcceEEEEEEccCCCeEEEEe-CCCcEEEEeec
Q 038439          140 DDTDEDAGSYFISAVCWKSDSPTMLTAN-SQGTIKVLVLA  178 (179)
Q Consensus       140 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~  178 (179)
                              ...+.+++|+|++++|+.++ .++.+++|++.
T Consensus       172 --------~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~  203 (297)
T 2ojh_A          172 --------EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVR  203 (297)
T ss_dssp             --------SSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             --------CCccccceECCCCCEEEEEecCCCCccEEEEC
Confidence                    55789999999999888766 58999999874

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.85  E-value=3.9e-19  Score=123.73  Aligned_cols=169  Identities=7%  Similarity=-0.021  Sum_probs=131.3

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccC---------ceeEEE
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKK---------AVSYVK   60 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~---------~i~~~~   60 (179)
                      ++.|.+||..+++.+..+.....+..++|+|+++.++++.           .+++.+  +..+..         .+.++.
T Consensus        68 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (353)
T 3vgz_A           68 GGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELV  147 (353)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEE
T ss_pred             CccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEE
Confidence            7899999999999988888777789999999997677665           233333  222221         267899


Q ss_pred             EeeC-CeEEEec--CCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCC
Q 038439           61 FLSN-DELASAS--TDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSP  137 (179)
Q Consensus        61 ~~~~-~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~  137 (179)
                      |+|+ +.+++++  .++.|.+||..+++.+..+..+...+..++|+|+++++++++.++.|.+||+.+++..........
T Consensus       148 ~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~  227 (353)
T 3vgz_A          148 ADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDD  227 (353)
T ss_dssp             EETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCS
T ss_pred             ECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCC
Confidence            9999 7666655  478899999999988888775555678899999999999999999999999999887766554211


Q ss_pred             CCCCCcccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEeecC
Q 038439          138 DMDDTDEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVLAA  179 (179)
Q Consensus       138 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~  179 (179)
                             . +...+..++|+|+++++++++. ++.|.+||+++
T Consensus       228 -------~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~  262 (353)
T 3vgz_A          228 -------G-KEHFFINISLDTARQRAFITDSKAAEVLVVDTRN  262 (353)
T ss_dssp             -------S-SCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT
T ss_pred             -------C-CCcccceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence                   0 1446888999999998777665 48999999753

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.84  E-value=4.7e-19  Score=122.43  Aligned_cols=161  Identities=8%  Similarity=0.020  Sum_probs=118.7

Q ss_pred             CCccEEEEEcCCceeEEeecCCC------ceeEEEEcCCCCeEEEEe----------------------CCCcee-eecc
Q 038439            2 AYGKVKVWCTRQEASVLNIDMKA------NICCVKYNPGSSNYIAKY----------------------QSTAPC-VHGH   52 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~~~~----------------------~~~~~~-~~~~   52 (179)
                      .++.|.+||+.+++.+..+....      .+..++|+|+++.++++.                      ..++.+ ....
T Consensus        54 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~  133 (337)
T 1pby_B           54 KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA  133 (337)
T ss_dssp             TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC
T ss_pred             CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC
Confidence            46789999999998887776443      688999999997777662                      112222 1112


Q ss_pred             cCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCC-------------------------------------
Q 038439           53 KKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHM-------------------------------------   94 (179)
Q Consensus        53 ~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-------------------------------------   94 (179)
                      ...+.++.|+|+ .+++++  ++.|.+||+.+++.+..+..+.                                     
T Consensus       134 ~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~  211 (337)
T 1pby_B          134 PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDP  211 (337)
T ss_dssp             CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCT
T ss_pred             CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccccccc
Confidence            345678889999 767776  5789999998776554332211                                     


Q ss_pred             -----------------------------CCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCccc
Q 038439           95 -----------------------------NEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDED  145 (179)
Q Consensus        95 -----------------------------~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  145 (179)
                                                   ..+..++|+|++++++++  ++.|.+||+.+++.+..+..           
T Consensus       212 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-----------  278 (337)
T 1pby_B          212 ADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-----------  278 (337)
T ss_dssp             TSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-----------
T ss_pred             ccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-----------
Confidence                                         123458999999998887  78999999998877665543           


Q ss_pred             CCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          146 AGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       146 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                        ...+.+++|+|++++|++++.++.|.+||+++
T Consensus       279 --~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~  310 (337)
T 1pby_B          279 --PHSYYSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             --SSCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             --CCceeeEEECCCCCEEEEEcCCCcEEEEECcC
Confidence              33567899999999999999999999999863

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.84  E-value=4.3e-19  Score=122.90  Aligned_cols=166  Identities=7%  Similarity=0.080  Sum_probs=117.4

Q ss_pred             CCccEEEEEcC-Cc--eeEEeecCCCceeEEEEcCCCCeEEEEeCC-------------Cce--e--eecccCceeEEEE
Q 038439            2 AYGKVKVWCTR-QE--ASVLNIDMKANICCVKYNPGSSNYIAKYQS-------------TAP--C--VHGHKKAVSYVKF   61 (179)
Q Consensus         2 ~d~~i~vwd~~-~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-------------~~~--~--~~~~~~~i~~~~~   61 (179)
                      .|+.|++||+. ++  +.+..+.+...+.+++|+|+++.+++++..             ++.  +  +..+ ..+..++|
T Consensus        13 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   91 (343)
T 1ri6_A           13 ESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-GSLTHIST   91 (343)
T ss_dssp             GGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-SCCSEEEE
T ss_pred             CCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-CCCcEEEE
Confidence            58999999985 33  455566788889999999999777776621             111  1  2222 36788999


Q ss_pred             eeC-CeEEEec-CCCcEEEEecC---CCcceeeecCCCCCeEEEEEeeCCCEEEEec-cCCcEEEEEcCC-Ccccccc--
Q 038439           62 LSN-DELASAS-TDSTLRLWDVK---ENLPVRTFRGHMNEKNFVGLTVNSEYIACGS-ESNEVYVYHKEI-SKPVTWH--  132 (179)
Q Consensus        62 ~~~-~~l~~~~-~d~~v~iwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d~~v~vwd~~~-~~~~~~~--  132 (179)
                      +|+ ..+++++ .++.|.+||+.   ..+.+..+.. ...+..++|+|+++++++++ .++.|.+||+.+ ++.....  
T Consensus        92 s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~  170 (343)
T 1ri6_A           92 DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA  170 (343)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred             cCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccc
Confidence            999 7665554 58899999994   3344444443 34578899999999888776 889999999987 5432211  


Q ss_pred             ccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEe-CCCcEEEEeec
Q 038439          133 RFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN-SQGTIKVLVLA  178 (179)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~  178 (179)
                      .....         ....+..++|+|+++++++++ .++.|.+|+++
T Consensus       171 ~~~~~---------~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~  208 (343)
T 1ri6_A          171 EVTTV---------EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELK  208 (343)
T ss_dssp             EEECS---------TTCCEEEEEECTTSSEEEEEETTTTEEEEEESS
T ss_pred             ccccC---------CCCCcceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            11110         044678899999999776555 78999999974

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.83  E-value=1.8e-18  Score=120.31  Aligned_cols=164  Identities=10%  Similarity=0.010  Sum_probs=125.5

Q ss_pred             CCccEEEEEcCCceeEEeecCCC----------ceeEEEEcCCCCeEEEEe------------CCCcee--eecccCcee
Q 038439            2 AYGKVKVWCTRQEASVLNIDMKA----------NICCVKYNPGSSNYIAKY------------QSTAPC--VHGHKKAVS   57 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~~~----------~v~~~~~~~~~~~~~~~~------------~~~~~~--~~~~~~~i~   57 (179)
                      .++.|.+||..+++.+..+....          .+.+++|+|+++.+++++            .+++.+  +..+...+.
T Consensus       109 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~  188 (353)
T 3vgz_A          109 VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMST  188 (353)
T ss_dssp             TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCC
T ss_pred             CCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccc
Confidence            46899999999999888776422          278999999997777665            222233  333455578


Q ss_pred             EEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecC----CCCCeEEEEEeeCCCEEEEecc-CCcEEEEEcCCCccccc
Q 038439           58 YVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRG----HMNEKNFVGLTVNSEYIACGSE-SNEVYVYHKEISKPVTW  131 (179)
Q Consensus        58 ~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~-d~~v~vwd~~~~~~~~~  131 (179)
                      .+.|+|+ +.+++++.++.+.+||..+++.+..+..    +...+..++|+|+++++++++. ++.|.+||+.+++.+..
T Consensus       189 ~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~  268 (353)
T 3vgz_A          189 GLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK  268 (353)
T ss_dssp             CCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             eEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            8999999 8888889999999999999888776654    4456778999999997766654 59999999999887766


Q ss_pred             cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEe-CCCcEEEEeecC
Q 038439          132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN-SQGTIKVLVLAA  179 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~  179 (179)
                      ....            .  ...++|+|++++++++. .++.|.+||+++
T Consensus       269 ~~~~------------~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~  303 (353)
T 3vgz_A          269 VAAP------------E--SLAVLFNPARNEAYVTHRQAGKVSVIDAKS  303 (353)
T ss_dssp             EECS------------S--CCCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             EEcC------------C--CceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence            5532            1  14589999999766655 689999999753

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.83  E-value=9.7e-19  Score=118.53  Aligned_cols=165  Identities=5%  Similarity=-0.015  Sum_probs=118.8

Q ss_pred             CCccEEEEEcCC-ceeEEeecC--CCceeEEEEcCCCCeEEEEeCC---Ccee--e---------ecccCceeEEEEeeC
Q 038439            2 AYGKVKVWCTRQ-EASVLNIDM--KANICCVKYNPGSSNYIAKYQS---TAPC--V---------HGHKKAVSYVKFLSN   64 (179)
Q Consensus         2 ~d~~i~vwd~~~-~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~---~~~~--~---------~~~~~~i~~~~~~~~   64 (179)
                      .++.|.+||+.+ ++.......  ...+.+++|+|+++.+++++..   ...+  +         ..+...+..++|+|+
T Consensus        60 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spd  139 (297)
T 2ojh_A           60 SEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPD  139 (297)
T ss_dssp             ETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTT
T ss_pred             cCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCC
Confidence            367899999998 777665542  3678999999999766666511   1111  1         112234788899999


Q ss_pred             -CeEE-EecCCCcEEEEecCC-CcceeeecCCCCCeEEEEEeeCCCEEEEec-cCCcEEEEEcC-CCccccccccCCCCC
Q 038439           65 -DELA-SASTDSTLRLWDVKE-NLPVRTFRGHMNEKNFVGLTVNSEYIACGS-ESNEVYVYHKE-ISKPVTWHRFSSPDM  139 (179)
Q Consensus        65 -~~l~-~~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d~~v~vwd~~-~~~~~~~~~~~~~~~  139 (179)
                       ..++ +++.++.+++|++.. ......+..+...+.+++|+|++++++.++ .++.+.+|++. .+.....+..  +  
T Consensus       140 g~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~--~--  215 (297)
T 2ojh_A          140 GKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD--S--  215 (297)
T ss_dssp             SSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC--C--
T ss_pred             CCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec--C--
Confidence             6665 778899999998642 334456666778899999999999877665 58899999986 3333332221  1  


Q ss_pred             CCCcccCCcceEEEEEEccCCCeEEEEeCC-----------CcEEEEeec
Q 038439          140 DDTDEDAGSYFISAVCWKSDSPTMLTANSQ-----------GTIKVLVLA  178 (179)
Q Consensus       140 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~  178 (179)
                              ...+..++|+|++++|++++.+           +.|++||++
T Consensus       216 --------~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~  257 (297)
T 2ojh_A          216 --------AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMD  257 (297)
T ss_dssp             --------SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETT
T ss_pred             --------CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecC
Confidence                    5578899999999999888876           569999975

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.83  E-value=2.3e-18  Score=119.06  Aligned_cols=168  Identities=10%  Similarity=0.060  Sum_probs=119.4

Q ss_pred             CCccEEEEEcCCceeEEeecC-CCceeEEEEcCCCCeEEEEe-----------CCCce-e--eecccCceeEEEEeeC-C
Q 038439            2 AYGKVKVWCTRQEASVLNIDM-KANICCVKYNPGSSNYIAKY-----------QSTAP-C--VHGHKKAVSYVKFLSN-D   65 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~-----------~~~~~-~--~~~~~~~i~~~~~~~~-~   65 (179)
                      .++.|.+||..+++.+..+.. ...+ .++|+|+++.+++++           ..++. .  +..+..+..+++|+|+ +
T Consensus        18 ~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~   96 (331)
T 3u4y_A           18 HLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQ   96 (331)
T ss_dssp             GGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSS
T ss_pred             CCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCC
Confidence            578999999999998877763 4456 999999997677766           23333 2  4444455555999999 7


Q ss_pred             eEEEecCCC---cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEe-ccCCc-EEEEEcCCCccccccccCCCCCC
Q 038439           66 ELASASTDS---TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACG-SESNE-VYVYHKEISKPVTWHRFSSPDMD  140 (179)
Q Consensus        66 ~l~~~~~d~---~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~d~~-v~vwd~~~~~~~~~~~~~~~~~~  140 (179)
                      +++++..++   .|.+||+.+++.+..+.. ......++|+|+|++++++ ..++. +.+|++.....+........   
T Consensus        97 ~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~---  172 (331)
T 3u4y_A           97 FAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI---  172 (331)
T ss_dssp             EEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE---
T ss_pred             EEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc---
Confidence            777555553   899999999888877764 3456899999999866554 55588 99999986443221110000   


Q ss_pred             CCcccCCcceEEEEEEccCCCeEEEEe-CCCcEEEEeecC
Q 038439          141 DTDEDAGSYFISAVCWKSDSPTMLTAN-SQGTIKVLVLAA  179 (179)
Q Consensus       141 ~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~  179 (179)
                          .. ...+..++|+|+|+++++++ .++.|.+||+++
T Consensus       173 ----~~-~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~  207 (331)
T 3u4y_A          173 ----SG-GTRPFNITFTPDGNFAFVANLIGNSIGILETQN  207 (331)
T ss_dssp             ----CS-SSSEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             ----cC-CCCccceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence                00 34578999999999665554 688999999863

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.83  E-value=2.4e-18  Score=126.60  Aligned_cols=166  Identities=10%  Similarity=0.060  Sum_probs=126.2

Q ss_pred             CCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeC------------CCcee--eecccCceeEEEEee----
Q 038439            2 AYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQ------------STAPC--VHGHKKAVSYVKFLS----   63 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------~~~~~--~~~~~~~i~~~~~~~----   63 (179)
                      .|++|.+||..+++++.++.....+..++|+|+|+.+++++.            +.+.+  +. +......++|+|    
T Consensus       157 ~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~  235 (543)
T 1nir_A          157 DAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGY  235 (543)
T ss_dssp             GGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTC
T ss_pred             CCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCC
Confidence            578999999999999999885445999999999977777762            22233  33 344568999999    


Q ss_pred             C-CeEEEec-CCCcEEEEecCCCcceeeecCC-----------CCCeEEEEEeeCCCE-EEEeccCCcEEEEEcCCCccc
Q 038439           64 N-DELASAS-TDSTLRLWDVKENLPVRTFRGH-----------MNEKNFVGLTVNSEY-IACGSESNEVYVYHKEISKPV  129 (179)
Q Consensus        64 ~-~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~-~~~~~~d~~v~vwd~~~~~~~  129 (179)
                      + +++++++ .++.|.+||..+.+++..+..+           ...+..+.++|++.. +++...++.|.+||+.+.+.+
T Consensus       236 dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l  315 (543)
T 1nir_A          236 EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL  315 (543)
T ss_dssp             TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSC
T ss_pred             CCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcc
Confidence            8 8888877 4899999999999888877542           236788999997655 567778999999999887654


Q ss_pred             cccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEe-CCCcEEEEeecC
Q 038439          130 TWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN-SQGTIKVLVLAA  179 (179)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~  179 (179)
                      ...... .          ...+..+.|+|+++++++++ .+++|.+||+.+
T Consensus       316 ~~~~i~-~----------~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t  355 (543)
T 1nir_A          316 TVTSIG-A----------APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD  355 (543)
T ss_dssp             EEEEEE-C----------CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             eeEEec-c----------CcCccCceECCCCCEEEEEecCCCeEEEEECCC
Confidence            422221 1          34567889999999876654 589999999764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.83  E-value=2.7e-18  Score=118.61  Aligned_cols=173  Identities=12%  Similarity=0.064  Sum_probs=124.6

Q ss_pred             CCccEEEEEcCCceeEEeecCCC---ceeEEEEcCCCCeEEEEe-----------CCCcee--ee-cc----cCceeEEE
Q 038439            2 AYGKVKVWCTRQEASVLNIDMKA---NICCVKYNPGSSNYIAKY-----------QSTAPC--VH-GH----KKAVSYVK   60 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~-~~----~~~i~~~~   60 (179)
                      .|++|.+||..+++.+..+....   .+..++|+|+++.+++++           .+++.+  +. .+    ...+..++
T Consensus         9 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (337)
T 1pby_B            9 RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA   88 (337)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEE
T ss_pred             CCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceE
Confidence            58999999999999988887665   689999999997776665           223333  22 11    22567899


Q ss_pred             EeeC-CeEEEec------------CCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCc
Q 038439           61 FLSN-DELASAS------------TDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK  127 (179)
Q Consensus        61 ~~~~-~~l~~~~------------~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~  127 (179)
                      |+|+ +.+++++            .++.|.+||+.+++.+..+.. ...+..++|+|++++++++  ++.|.+||+.+++
T Consensus        89 ~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~  165 (337)
T 1pby_B           89 LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGT  165 (337)
T ss_dssp             ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTE
T ss_pred             ECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCc
Confidence            9999 7887775            579999999998887777764 4457789999999988887  6889999999887


Q ss_pred             cccccccCCCCCCCC---------c---------------------------------------------ccCCcceEEE
Q 038439          128 PVTWHRFSSPDMDDT---------D---------------------------------------------EDAGSYFISA  153 (179)
Q Consensus       128 ~~~~~~~~~~~~~~~---------~---------------------------------------------~~~~~~~i~~  153 (179)
                      ....+..........         .                                             ...+...+..
T Consensus       166 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~  245 (337)
T 1pby_B          166 LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFS  245 (337)
T ss_dssp             EEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEE
T ss_pred             EeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceee
Confidence            654333221000000         0                                             0001124567


Q ss_pred             EEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          154 VCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       154 ~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      ++|+|++++++++  ++.|.+||+++
T Consensus       246 ~~~s~dg~~l~~~--~~~v~~~d~~~  269 (337)
T 1pby_B          246 TAVNPAKTRAFGA--YNVLESFDLEK  269 (337)
T ss_dssp             EEECTTSSEEEEE--ESEEEEEETTT
T ss_pred             EEECCCCCEEEEe--CCeEEEEECCC
Confidence            9999999999888  78999999753

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.82  E-value=5.9e-19  Score=133.51  Aligned_cols=171  Identities=11%  Similarity=0.100  Sum_probs=120.8

Q ss_pred             CCCccEEEEEcCCceeEEeecCCC----ceeEEEEcCCCCeEEEEeCC-------------------Ccee----eeccc
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKA----NICCVKYNPGSSNYIAKYQS-------------------TAPC----VHGHK   53 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~-------------------~~~~----~~~~~   53 (179)
                      +.||+|++||+.+++....+.+..    .|.+++|||||+.++++...                   ++..    ..+|.
T Consensus        34 ~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~  113 (723)
T 1xfd_A           34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSN  113 (723)
T ss_dssp             CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCS
T ss_pred             eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcccc
Confidence            468999999999998877776433    49999999999776666421                   1111    11233


Q ss_pred             CceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCe------------------EEEEEeeCCCEEEEecc
Q 038439           54 KAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEK------------------NFVGLTVNSEYIACGSE  114 (179)
Q Consensus        54 ~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v------------------~~~~~~~~~~~~~~~~~  114 (179)
                      ..+..++|+|+ ..|++++. +.|++||+.+++.......+...+                  ..++|+|||++|++++.
T Consensus       114 ~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~  192 (723)
T 1xfd_A          114 AKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI  192 (723)
T ss_dssp             CCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred             ccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEE
Confidence            34788999999 78888876 799999999887765554433323                  78999999999998875


Q ss_pred             CC----------------------------------cEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCC
Q 038439          115 SN----------------------------------EVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDS  160 (179)
Q Consensus       115 d~----------------------------------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  160 (179)
                      ++                                  .|++||+.+++....+....     .. ..+...+..++|+|||
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~-----~~-~~~~~~~~~~~~SpDg  266 (723)
T 1xfd_A          193 NDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPD-----DP-RMREYYITMVKWATST  266 (723)
T ss_dssp             ECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCC-----CG-GGSSEEEEEEEESSSS
T ss_pred             CCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCc-----cC-CCccceeEEEEEeCCC
Confidence            43                                  78899998876433322110     00 0114578999999999


Q ss_pred             CeEEEEeC----CCcEEEEeec
Q 038439          161 PTMLTANS----QGTIKVLVLA  178 (179)
Q Consensus       161 ~~l~~~~~----dg~i~iwd~~  178 (179)
                      +++++...    +..|++||+.
T Consensus       267 ~~l~~~~~~~~~~~~i~~~d~~  288 (723)
T 1xfd_A          267 KVAVTWLNRAQNVSILTLCDAT  288 (723)
T ss_dssp             EEEEEEEETTSCEEEEEEEETT
T ss_pred             eEEEEEEcCCCCeEEEEEEeCC
Confidence            98877653    3579999875

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.81  E-value=3.2e-18  Score=125.94  Aligned_cols=173  Identities=10%  Similarity=0.056  Sum_probs=125.9

Q ss_pred             CCccEEEEEcCCceeEE--eecCCCceeEEEEcCCCCeEEEEe-----------CCCcee--eec----ccCceeEEEEe
Q 038439            2 AYGKVKVWCTRQEASVL--NIDMKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHG----HKKAVSYVKFL   62 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~----~~~~i~~~~~~   62 (179)
                      .+++|.+||+.+.+.+.  .+.+...+..+.|+|+|+.+++++           .+++.+  +..    |......+ ++
T Consensus       300 ~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~  378 (543)
T 1nir_A          300 ETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VH  378 (543)
T ss_dssp             TTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EE
T ss_pred             CCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CC
Confidence            57899999998866544  566777899999999998777765           334444  332    44333333 46


Q ss_pred             eC--CeEEEec-CCCcEEEEecCC-------CcceeeecCCCCCeEEEEEeeCCCEEEEec-------cCCcEEEEEcCC
Q 038439           63 SN--DELASAS-TDSTLRLWDVKE-------NLPVRTFRGHMNEKNFVGLTVNSEYIACGS-------ESNEVYVYHKEI  125 (179)
Q Consensus        63 ~~--~~l~~~~-~d~~v~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------~d~~v~vwd~~~  125 (179)
                      |+  ..++++. .|++|.+||..+       .+.++++..+...+..++++|++++|++++       .++.|.+||+.+
T Consensus       379 p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~  458 (543)
T 1nir_A          379 PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN  458 (543)
T ss_dssp             TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred             CCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCC
Confidence            76  4556665 589999999988       788899998888888999999999999987       267999999999


Q ss_pred             Cccc-cccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEe-----CCCcEEEEeecC
Q 038439          126 SKPV-TWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN-----SQGTIKVLVLAA  179 (179)
Q Consensus       126 ~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~  179 (179)
                      ++.. ..+......   .... +...+..+.|+|+|+.++++.     .++.|.|||.++
T Consensus       459 ~~~~~~~~~v~~~~---~~~~-~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t  514 (543)
T 1nir_A          459 LDAKYQVLPIAEWA---DLGE-GAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT  514 (543)
T ss_dssp             TTSCCEEECHHHHH---CCCS-SCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred             CCCCeEEeechhhc---ccCC-CCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCC
Confidence            8765 322111000   0001 156799999999999998763     479999999764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.81  E-value=6.1e-19  Score=133.20  Aligned_cols=164  Identities=10%  Similarity=0.060  Sum_probs=116.1

Q ss_pred             CCccEEEEEcCCcee--EEeecCC-----------------CceeEEEEcCCCCeEEEEe---------CCCcee-eecc
Q 038439            2 AYGKVKVWCTRQEAS--VLNIDMK-----------------ANICCVKYNPGSSNYIAKY---------QSTAPC-VHGH   52 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~--~~~~~~~-----------------~~v~~~~~~~~~~~~~~~~---------~~~~~~-~~~~   52 (179)
                      .|+ | +||+.+++.  ...+.+.                 ..|.+++|+|+ ..++++.         .+++.. +..+
T Consensus        43 ~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~~~~i~~~d~~~~~~~~l~~~  119 (706)
T 2z3z_A           43 GDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFTQGGLVGFDMLARKVTYLFDT  119 (706)
T ss_dssp             TTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEETTEEEEEETTTTEEEEEECC
T ss_pred             CCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEECCEEEEEECCCCceEEccCC
Confidence            356 8 999999877  3334332                 56999999999 5666655         334444 5566


Q ss_pred             cCceeEEEEeeC-CeEEEecCCCcEEEEecCC-----CcceeeecCCCCC--------------eEEEEEeeCCCEEEEe
Q 038439           53 KKAVSYVKFLSN-DELASASTDSTLRLWDVKE-----NLPVRTFRGHMNE--------------KNFVGLTVNSEYIACG  112 (179)
Q Consensus        53 ~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~-----~~~~~~~~~~~~~--------------v~~~~~~~~~~~~~~~  112 (179)
                      ...+.+++|+|+ ..|+++ .++.|++||+.+     ++.......+...              +..+.|+|||++|+++
T Consensus       120 ~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~  198 (706)
T 2z3z_A          120 NEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFY  198 (706)
T ss_dssp             TTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEE
T ss_pred             cccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEE
Confidence            777889999999 777774 679999999988     7665544333332              4789999999999988


Q ss_pred             c---------------------------------cCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccC
Q 038439          113 S---------------------------------ESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD  159 (179)
Q Consensus       113 ~---------------------------------~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  159 (179)
                      +                                 .+..|++||+.+++.........          +...+..++|+||
T Consensus       199 ~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~----------~~~~~~~~~~spd  268 (706)
T 2z3z_A          199 RMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEP----------KEKFLTNLSWSPD  268 (706)
T ss_dssp             EEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSC----------TTCEEEEEEECTT
T ss_pred             EECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCC----------CceeEeeEEEECC
Confidence            7                                 34679999999877543322111          1567999999999


Q ss_pred             CCeEEEEeCCC-----cEEEEeecC
Q 038439          160 SPTMLTANSQG-----TIKVLVLAA  179 (179)
Q Consensus       160 ~~~l~~~~~dg-----~i~iwd~~~  179 (179)
                      |+.|++++.++     .|++||+++
T Consensus       269 g~~l~~~~~~~~~~~~~v~~~d~~~  293 (706)
T 2z3z_A          269 ENILYVAEVNRAQNECKVNAYDAET  293 (706)
T ss_dssp             SSEEEEEEECTTSCEEEEEEEETTT
T ss_pred             CCEEEEEEeCCCCCeeEEEEEECCC
Confidence            99999887765     899999753

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.80  E-value=1.9e-18  Score=131.18  Aligned_cols=162  Identities=10%  Similarity=0.072  Sum_probs=119.6

Q ss_pred             cEEEEEcCCceeEEeecCC-------------------------CceeEEEEcCCCCeEEEEe---------CCC---ce
Q 038439            5 KVKVWCTRQEASVLNIDMK-------------------------ANICCVKYNPGSSNYIAKY---------QST---AP   47 (179)
Q Consensus         5 ~i~vwd~~~~~~~~~~~~~-------------------------~~v~~~~~~~~~~~~~~~~---------~~~---~~   47 (179)
                      +|++||+.+++....+...                         ..+.+++|+|+|+.+++++         ..+   +.
T Consensus        65 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~  144 (741)
T 2ecf_A           65 DLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAV  144 (741)
T ss_dssp             EEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSC
T ss_pred             EEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeCCcEEEEECCCCCcceE
Confidence            8999999998876666421                         2388999999997776665         233   33


Q ss_pred             e-eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCC----------------eEEEEEeeCCCEE
Q 038439           48 C-VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNE----------------KNFVGLTVNSEYI  109 (179)
Q Consensus        48 ~-~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~----------------v~~~~~~~~~~~~  109 (179)
                      . +..|...+..++|+|+ +.|++++ ++.|++||+.+++.......+...                +..++|+|||++|
T Consensus       145 ~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l  223 (741)
T 2ecf_A          145 RQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAI  223 (741)
T ss_dssp             CBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCE
T ss_pred             EEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEE
Confidence            3 6667788999999999 7788777 468999999987765444333322                4679999999999


Q ss_pred             EEeccCC---------------------------------cEEEEEcCC-CccccccccCCCCCCCCcccCCcceEEEEE
Q 038439          110 ACGSESN---------------------------------EVYVYHKEI-SKPVTWHRFSSPDMDDTDEDAGSYFISAVC  155 (179)
Q Consensus       110 ~~~~~d~---------------------------------~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  155 (179)
                      ++++.|+                                 .|.+||+.+ ++........          .+...+..++
T Consensus       224 ~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~----------~~~~~~~~~~  293 (741)
T 2ecf_A          224 AYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGK----------EQDIYLARVN  293 (741)
T ss_dssp             EEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCS----------CSSEEEEEEE
T ss_pred             EEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCC----------CcceEEEEEE
Confidence            9887665                                 788899988 7654322110          1166899999


Q ss_pred             EccCCCeEEEEeC-----CCcEEEEeec
Q 038439          156 WKSDSPTMLTANS-----QGTIKVLVLA  178 (179)
Q Consensus       156 ~~~~~~~l~~~~~-----dg~i~iwd~~  178 (179)
                      | |||++|++++.     +..|++||++
T Consensus       294 ~-pDg~~l~~~~~~~~~~~~~i~~~d~~  320 (741)
T 2ecf_A          294 W-RDPQHLSFQRQSRDQKKLDLVEVTLA  320 (741)
T ss_dssp             E-EETTEEEEEEEETTSSEEEEEEEETT
T ss_pred             e-CCCCEEEEEEecccCCeEEEEEEECC
Confidence            9 99999987654     5679999875

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.79  E-value=1.3e-17  Score=115.81  Aligned_cols=160  Identities=10%  Similarity=0.037  Sum_probs=117.0

Q ss_pred             CCccEEEEEcCCceeEEeecCC-------CceeEEEEcCCCCeEEEEeCC------------Ccee-e------------
Q 038439            2 AYGKVKVWCTRQEASVLNIDMK-------ANICCVKYNPGSSNYIAKYQS------------TAPC-V------------   49 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~------------~~~~-~------------   49 (179)
                      .++.|.+||+.+++.+..+...       ..+..++|+|+|+.++++...            .... +            
T Consensus        63 ~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  142 (349)
T 1jmx_B           63 HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR  142 (349)
T ss_dssp             TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE
T ss_pred             CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceee
Confidence            4789999999999888777632       238899999999776666521            1111 1            


Q ss_pred             -ecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCC---------------------------------
Q 038439           50 -HGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHM---------------------------------   94 (179)
Q Consensus        50 -~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~---------------------------------   94 (179)
                       ..+...+.+++|+|+ . +++++.  .|.+||+.+++.+..+..+.                                 
T Consensus       143 ~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (349)
T 1jmx_B          143 TFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF  219 (349)
T ss_dssp             EEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC
T ss_pred             eccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeec
Confidence             112335778889999 6 665543  49999999887666554321                                 


Q ss_pred             -----------------------------------CCeEEEEEee-CCCEEEEeccCCcEEEEEcCCCccccccccCCCC
Q 038439           95 -----------------------------------NEKNFVGLTV-NSEYIACGSESNEVYVYHKEISKPVTWHRFSSPD  138 (179)
Q Consensus        95 -----------------------------------~~v~~~~~~~-~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~  138 (179)
                                                         ..+..++|+| ++++++++  ++.|.+||+.+++.+.....    
T Consensus       220 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~----  293 (349)
T 1jmx_B          220 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL----  293 (349)
T ss_dssp             -------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC----
T ss_pred             CCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC----
Confidence                                               1234567789 99998888  88999999999887665543    


Q ss_pred             CCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          139 MDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       139 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                               ...+..++|+|++++|++++.++.|.+||+++
T Consensus       294 ---------~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~  325 (349)
T 1jmx_B          294 ---------DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT  325 (349)
T ss_dssp             ---------SSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred             ---------CCCccceEECCCCCEEEEecCCCeEEEEeccc
Confidence                     33467899999999999988899999999863

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.78  E-value=2.8e-18  Score=129.64  Aligned_cols=170  Identities=7%  Similarity=0.028  Sum_probs=122.5

Q ss_pred             CCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe---------CC-----Ccee--eecccCc----------
Q 038439            2 AYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY---------QS-----TAPC--VHGHKKA----------   55 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------~~-----~~~~--~~~~~~~----------   55 (179)
                      .|++|++||+.+++......+...+.+++|+|+|+.++.+.         ..     ++..  ...+...          
T Consensus        99 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~e  178 (706)
T 2z3z_A           99 TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQR  178 (706)
T ss_dssp             ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGG
T ss_pred             ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhh
Confidence            35889999999998777677778899999999997666654         23     3333  2222222          


Q ss_pred             ----eeEEEEeeC-CeEEEec---------------------------------CCCcEEEEecCCCcceeeec--CCCC
Q 038439           56 ----VSYVKFLSN-DELASAS---------------------------------TDSTLRLWDVKENLPVRTFR--GHMN   95 (179)
Q Consensus        56 ----i~~~~~~~~-~~l~~~~---------------------------------~d~~v~iwd~~~~~~~~~~~--~~~~   95 (179)
                          +.++.|+|+ ..|++++                                 .+..|.+||+.+++......  .+..
T Consensus       179 e~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~  258 (706)
T 2z3z_A          179 EFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEK  258 (706)
T ss_dssp             CTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTC
T ss_pred             hcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCce
Confidence                478999999 8888887                                 44679999999877544332  3556


Q ss_pred             CeEEEEEeeCCCEEEEeccCC-----cEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEcc--CCCeEEEEeC
Q 038439           96 EKNFVGLTVNSEYIACGSESN-----EVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKS--DSPTMLTANS  168 (179)
Q Consensus        96 ~v~~~~~~~~~~~~~~~~~d~-----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~  168 (179)
                      .+..++|+|||++|++++.++     .|.+||+.+++...........      .. ...+..++|+|  +|++++++..
T Consensus       259 ~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~------~~-~~~~~~~~~sp~~dg~~l~~~~~  331 (706)
T 2z3z_A          259 FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDK------HY-VEPLHPLTFLPGSNNQFIWQSRR  331 (706)
T ss_dssp             EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECS------SC-CCCCSCCEECTTCSSEEEEEECT
T ss_pred             eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCC------Ce-ECccCCceeecCCCCEEEEEEcc
Confidence            789999999999999887765     8999999988333222111000      00 11235689999  9999999999


Q ss_pred             CCcEEEEeec
Q 038439          169 QGTIKVLVLA  178 (179)
Q Consensus       169 dg~i~iwd~~  178 (179)
                      |+.++||.+.
T Consensus       332 ~g~~~l~~~~  341 (706)
T 2z3z_A          332 DGWNHLYLYD  341 (706)
T ss_dssp             TSSCEEEEEE
T ss_pred             CCccEEEEEE
Confidence            9999999764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.78  E-value=3.5e-17  Score=113.28  Aligned_cols=164  Identities=12%  Similarity=0.088  Sum_probs=112.0

Q ss_pred             CCccEEEEEc---CCceeEEeecCCCceeEEEEcCCCCeEEEEe-----------CC-Ccee-e-----e-cccCceeEE
Q 038439            2 AYGKVKVWCT---RQEASVLNIDMKANICCVKYNPGSSNYIAKY-----------QS-TAPC-V-----H-GHKKAVSYV   59 (179)
Q Consensus         2 ~d~~i~vwd~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~-~~~~-~-----~-~~~~~i~~~   59 (179)
                      .++.|.+||+   .+.+.+..+.....+.+++|+|+++.+++++           .. ++.. .     . .....+..+
T Consensus       104 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (343)
T 1ri6_A          104 NAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHM  183 (343)
T ss_dssp             TTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEE
T ss_pred             CCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceE
Confidence            4788999999   4455666666667799999999997777665           11 2111 0     1 123367789


Q ss_pred             EEeeC-CeEE-EecCCCcEEEEecCC--Ccc--eeeec---CC---CCCeEEEEEeeCCCEEE-EeccCCcEEEEEcCC-
Q 038439           60 KFLSN-DELA-SASTDSTLRLWDVKE--NLP--VRTFR---GH---MNEKNFVGLTVNSEYIA-CGSESNEVYVYHKEI-  125 (179)
Q Consensus        60 ~~~~~-~~l~-~~~~d~~v~iwd~~~--~~~--~~~~~---~~---~~~v~~~~~~~~~~~~~-~~~~d~~v~vwd~~~-  125 (179)
                      +|+|+ .+++ ++..++.+.+||+..  ++.  ...+.   ..   ...+..++|+|++++++ ++..++.|.+||+.. 
T Consensus       184 ~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~  263 (343)
T 1ri6_A          184 VFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSED  263 (343)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCC
Confidence            99999 6554 555889999999953  332  22222   11   23566899999998876 555789999999983 


Q ss_pred             -Cc--cccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEe-CCCcEEEEeec
Q 038439          126 -SK--PVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN-SQGTIKVLVLA  178 (179)
Q Consensus       126 -~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~  178 (179)
                       +.  .+.....             ...+..++|+|++++|++++ .++.+.+|++.
T Consensus       264 ~~~~~~~~~~~~-------------~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          264 GSVLSKEGFQPT-------------ETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             SCCEEEEEEEEC-------------SSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             CCceEEeeeecC-------------CCccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence             22  2222221             22377899999999888887 58999999653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.78  E-value=2.3e-17  Score=114.52  Aligned_cols=128  Identities=9%  Similarity=0.075  Sum_probs=93.1

Q ss_pred             CCccEEEEEcCCceeEEeecCCC--ceeEEEEcCCCCeEEEEe-----------CCCcee--eec-c-----cCceeEEE
Q 038439            2 AYGKVKVWCTRQEASVLNIDMKA--NICCVKYNPGSSNYIAKY-----------QSTAPC--VHG-H-----KKAVSYVK   60 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~-~-----~~~i~~~~   60 (179)
                      .|++|++||..+++.+..+....  .+..++|+|+++.+++++           .+++.+  +.. +     ...+..++
T Consensus        19 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~   98 (349)
T 1jmx_B           19 YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFA   98 (349)
T ss_dssp             TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEE
T ss_pred             CCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceE
Confidence            57899999999999888887555  789999999997666665           223333  221 1     22377899


Q ss_pred             EeeC-CeEEEecCC------------CcEEEEecCCCcc---eeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcC
Q 038439           61 FLSN-DELASASTD------------STLRLWDVKENLP---VRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKE  124 (179)
Q Consensus        61 ~~~~-~~l~~~~~d------------~~v~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~  124 (179)
                      |+|+ +++++++.+            +.|.+||+.+++.   +..+.. ...+.+++|+|+|+ +++++.  .|.+||+.
T Consensus        99 ~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~  174 (349)
T 1jmx_B           99 ISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGS-LYVAGP--DIYKMDVK  174 (349)
T ss_dssp             ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSC-EEEESS--SEEEECTT
T ss_pred             ECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECCCCc-EEEccC--cEEEEeCC
Confidence            9999 788888755            8999999987443   333333 34578899999999 555543  49999999


Q ss_pred             CCccccccc
Q 038439          125 ISKPVTWHR  133 (179)
Q Consensus       125 ~~~~~~~~~  133 (179)
                      +++....+.
T Consensus       175 ~~~~~~~~~  183 (349)
T 1jmx_B          175 TGKYTVALP  183 (349)
T ss_dssp             TCCEEEEEC
T ss_pred             CCceecccc
Confidence            887665443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.78  E-value=5.7e-17  Score=112.04  Aligned_cols=165  Identities=9%  Similarity=0.028  Sum_probs=113.8

Q ss_pred             CCccEEEEEcCCcee-EEeecCCCceeE-EEEcCCCCeEEEEeCCCc--ee------------eecccCceeEEEEeeC-
Q 038439            2 AYGKVKVWCTRQEAS-VLNIDMKANICC-VKYNPGSSNYIAKYQSTA--PC------------VHGHKKAVSYVKFLSN-   64 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~-~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~--~~------------~~~~~~~i~~~~~~~~-   64 (179)
                      .++.|.+||..+++. ...+........ ++|+|+++.+++....+.  .+            .........+++|+|+ 
T Consensus        60 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg  139 (331)
T 3u4y_A           60 FCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNG  139 (331)
T ss_dssp             TTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTS
T ss_pred             CCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCC
Confidence            367999999999887 666664444455 999999976663322211  22            1112344688999999 


Q ss_pred             CeEE-EecCCCc-EEEEecCCCccee----eecCCCCCeEEEEEeeCCCEEE-EeccCCcEEEEEcCCCcc---cccccc
Q 038439           65 DELA-SASTDST-LRLWDVKENLPVR----TFRGHMNEKNFVGLTVNSEYIA-CGSESNEVYVYHKEISKP---VTWHRF  134 (179)
Q Consensus        65 ~~l~-~~~~d~~-v~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~-~~~~d~~v~vwd~~~~~~---~~~~~~  134 (179)
                      ++++ +...++. +.+|++.....+.    ........+..++|+|+|++++ ++..++.|.+||+.+++.   +..+..
T Consensus       140 ~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~  219 (331)
T 3u4y_A          140 NGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT  219 (331)
T ss_dssp             SCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC
T ss_pred             CEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC
Confidence            5454 4456688 9999987643321    1112345578999999999655 455689999999998887   444432


Q ss_pred             CCCCCCCCcccCCcceEEEEEEccCCCeEEEEe-CCCcEEEEeecC
Q 038439          135 SSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN-SQGTIKVLVLAA  179 (179)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~  179 (179)
                                   ...+..++|+|+|+++++++ .++.|.+||+++
T Consensus       220 -------------~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~  252 (331)
T 3u4y_A          220 -------------NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS  252 (331)
T ss_dssp             -------------SSCCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred             -------------CCCCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence                         34567899999999776665 477899999753

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.76  E-value=3e-17  Score=128.86  Aligned_cols=161  Identities=12%  Similarity=-0.013  Sum_probs=126.0

Q ss_pred             CccEEEEEcCCceeEEeecCCC-ceeEEEEcCCCCeEEEEeC-----------CCcee-eecccCceeEEEEeeC-CeEE
Q 038439            3 YGKVKVWCTRQEASVLNIDMKA-NICCVKYNPGSSNYIAKYQ-----------STAPC-VHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~-----------~~~~~-~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      ++.|.+|+..+++......+.. .+..++|+ +|+.++.++.           .++.. +.+|...+..++|+|+ ..|+
T Consensus       316 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la  394 (1045)
T 1k32_A          316 RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAV  394 (1045)
T ss_dssp             TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEE
T ss_pred             cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEE
Confidence            5678999988877655445666 89999999 8866655441           22222 4467788999999999 8999


Q ss_pred             EecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCC----------cEEEEEcCCCccccccccCCCC
Q 038439           69 SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESN----------EVYVYHKEISKPVTWHRFSSPD  138 (179)
Q Consensus        69 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~----------~v~vwd~~~~~~~~~~~~~~~~  138 (179)
                      +++.++.|++||+.+++....+..|...+..++|+|||++|++++.++          .|++||+.+++.. .+.  .+ 
T Consensus       395 ~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~-~l~--~~-  470 (1045)
T 1k32_A          395 VANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF-AAT--TE-  470 (1045)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE-ECS--CS-
T ss_pred             EECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEE-Eee--CC-
Confidence            999999999999999887777767888889999999999998877654          8999999987632 221  11 


Q ss_pred             CCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          139 MDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       139 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                               ...+..++|+|+|++|++++.++...+|+.
T Consensus       471 ---------~~~~~~~~~spdG~~l~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          471 ---------NSHDYAPAFDADSKNLYYLSYRSLDPSPDR  500 (1045)
T ss_dssp             ---------SSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             ---------CcccCCceEcCCCCEEEEEecccCCcCcch
Confidence                     456788999999999999998887777763

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.76  E-value=5.9e-17  Score=120.08  Aligned_cols=158  Identities=9%  Similarity=-0.001  Sum_probs=112.1

Q ss_pred             CccEEEEEcCCceeEEeecCC-CceeEEEEcCCCCeEEEEeCC---Cc--ee--ee----c------ccCceeEEEEeeC
Q 038439            3 YGKVKVWCTRQEASVLNIDMK-ANICCVKYNPGSSNYIAKYQS---TA--PC--VH----G------HKKAVSYVKFLSN   64 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~---~~--~~--~~----~------~~~~i~~~~~~~~   64 (179)
                      ||+++||++.+++..+...+. ..+.+++|+|+  .+++++..   ..  .+  +.    +      ....+...+|+|+
T Consensus        43 ~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~s~d  120 (582)
T 3o4h_A           43 EGSVNAYLYDGGETVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDT  120 (582)
T ss_dssp             TTEEEEEEEETTEEEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSCSBEEEEEEEC
T ss_pred             CCceeEEEEcCCCcEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEeccCCCccccccCCCCceeeeeCCC
Confidence            899999999877766655665 58999999998  45554321   11  11  11    1      1123446688888


Q ss_pred             --CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccC----CcEEEEEcCCCccccccccCCCC
Q 038439           65 --DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSES----NEVYVYHKEISKPVTWHRFSSPD  138 (179)
Q Consensus        65 --~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d----~~v~vwd~~~~~~~~~~~~~~~~  138 (179)
                        ..+++.+.++.+.+||+.+++....... ..  .+++|+|||+++++++.+    +.|++||+.+++......   + 
T Consensus       121 g~~~~~~s~~~~~~~l~d~~~g~~~~l~~~-~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~---~-  193 (582)
T 3o4h_A          121 GEAVVFTGATEDRVALYALDGGGLRELARL-PG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDS---G-  193 (582)
T ss_dssp             SSCEEEEEECSSCEEEEEEETTEEEEEEEE-SS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECC---S-
T ss_pred             CCeEEEEecCCCCceEEEccCCcEEEeecC-CC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeec---C-
Confidence              4445545555566999998865544433 22  789999999999988776    789999999887643211   1 


Q ss_pred             CCCCcccCCcceEEEEEEccCCCeEEEEeCCC--cEEEEeec
Q 038439          139 MDDTDEDAGSYFISAVCWKSDSPTMLTANSQG--TIKVLVLA  178 (179)
Q Consensus       139 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~iwd~~  178 (179)
                               ...+..++|+|||+.|+++..++  .|++||++
T Consensus       194 ---------~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~  226 (582)
T 3o4h_A          194 ---------EGSFSSASISPGMKVTAGLETAREARLVTVDPR  226 (582)
T ss_dssp             ---------SCEEEEEEECTTSCEEEEEECSSCEEEEEECTT
T ss_pred             ---------CCccccceECCCCCEEEEccCCCeeEEEEEcCC
Confidence                     55689999999999999888888  89999875

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.76  E-value=2.2e-17  Score=129.64  Aligned_cols=161  Identities=11%  Similarity=0.116  Sum_probs=123.2

Q ss_pred             CccEEEEEcCCceeEEeecC------------CCceeEEEEc-CCCCeEEEEe---------CCCcee-eecccC-ceeE
Q 038439            3 YGKVKVWCTRQEASVLNIDM------------KANICCVKYN-PGSSNYIAKY---------QSTAPC-VHGHKK-AVSY   58 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~------------~~~v~~~~~~-~~~~~~~~~~---------~~~~~~-~~~~~~-~i~~   58 (179)
                      |+.|.+||....+ +..+..            ...+.+++|+ |+|..++++.         ..++.. +..|.. .+..
T Consensus       264 ~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  342 (1045)
T 1k32_A          264 GGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVR  342 (1045)
T ss_dssp             TTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEE
T ss_pred             CCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcceEEe
Confidence            6789999985443 334432            2368999999 9997666665         222333 556666 8899


Q ss_pred             EEEeeC-CeEEEecCCCcEE-EEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCC
Q 038439           59 VKFLSN-DELASASTDSTLR-LWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSS  136 (179)
Q Consensus        59 ~~~~~~-~~l~~~~~d~~v~-iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~  136 (179)
                      ++|+ + ..+++++.+..+. +||+..++.. .+..+...+..++|+|||++|++++.++.|++||+.+++.......  
T Consensus       343 ~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~--  418 (1045)
T 1k32_A          343 RGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS--  418 (1045)
T ss_dssp             ECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC--
T ss_pred             eeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC--
Confidence            9999 9 7888888888888 8998876544 4446778899999999999999999999999999998876554321  


Q ss_pred             CCCCCCcccCCcceEEEEEEccCCCeEEEEeCCC----------cEEEEeec
Q 038439          137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG----------TIKVLVLA  178 (179)
Q Consensus       137 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----------~i~iwd~~  178 (179)
                      +          ...+..++|+|||++|++++.++          .|++||+.
T Consensus       419 ~----------~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~  460 (1045)
T 1k32_A          419 R----------EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME  460 (1045)
T ss_dssp             S----------SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred             C----------CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence            1          55678899999999998887654          89999975

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.75  E-value=2.2e-17  Score=125.37  Aligned_cols=166  Identities=10%  Similarity=0.010  Sum_probs=117.6

Q ss_pred             ccEEEEEcCCc---eeEEeecCCCceeEEEEcCCCCeEEEEe---------CCCcee--eecccCc--------------
Q 038439            4 GKVKVWCTRQE---ASVLNIDMKANICCVKYNPGSSNYIAKY---------QSTAPC--VHGHKKA--------------   55 (179)
Q Consensus         4 ~~i~vwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------~~~~~~--~~~~~~~--------------   55 (179)
                      +.|.+||+.++   +......+...+..++|+|+|+.++.+.         ..++..  ...+...              
T Consensus       129 ~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~  208 (741)
T 2ecf_A          129 GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEM  208 (741)
T ss_dssp             TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHS
T ss_pred             CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccceeccccceeeeecc
Confidence            67999999988   5544445778899999999997666554         222222  1222221              


Q ss_pred             --eeEEEEeeC-CeEEEecCCC---------------------------------cEEEEecCC-Ccceeeec--CCCCC
Q 038439           56 --VSYVKFLSN-DELASASTDS---------------------------------TLRLWDVKE-NLPVRTFR--GHMNE   96 (179)
Q Consensus        56 --i~~~~~~~~-~~l~~~~~d~---------------------------------~v~iwd~~~-~~~~~~~~--~~~~~   96 (179)
                        +..+.|+|+ ..|++++.|+                                 .|.+||+.+ ++......  .+...
T Consensus       209 ~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~  288 (741)
T 2ecf_A          209 DRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIY  288 (741)
T ss_dssp             CCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEE
T ss_pred             ccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceE
Confidence              477999999 8888887665                                 788999988 76544332  35667


Q ss_pred             eEEEEEeeCCCEEEEecc-----CCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCc
Q 038439           97 KNFVGLTVNSEYIACGSE-----SNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGT  171 (179)
Q Consensus        97 v~~~~~~~~~~~~~~~~~-----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  171 (179)
                      +..++| |||++|++++.     +..|++||+.+++...........       . -..+..++|+|||+++++++.||.
T Consensus       289 ~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~-------~-~~~~~~~~~spdg~~~~~~~~~g~  359 (741)
T 2ecf_A          289 LARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPT-------W-VPLHNSLRFLDDGSILWSSERTGF  359 (741)
T ss_dssp             EEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSS-------C-CCCCSCCEECTTSCEEEEECTTSS
T ss_pred             EEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCC-------c-CCcCCceEECCCCeEEEEecCCCc
Confidence            899999 99999887654     567999999998765544321100       0 003457899999999999999998


Q ss_pred             EEEEeec
Q 038439          172 IKVLVLA  178 (179)
Q Consensus       172 i~iwd~~  178 (179)
                      ++||.+.
T Consensus       360 ~~l~~~~  366 (741)
T 2ecf_A          360 QHLYRID  366 (741)
T ss_dssp             CEEEEEC
T ss_pred             cEEEEEc
Confidence            8888654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.75  E-value=3.8e-16  Score=108.69  Aligned_cols=167  Identities=11%  Similarity=0.073  Sum_probs=111.2

Q ss_pred             CCccEEEEEcC--CceeE--EeecCCCceeEEEEcCCCCeEEEEeC-------------CCc--ee--eecccCceeEEE
Q 038439            2 AYGKVKVWCTR--QEASV--LNIDMKANICCVKYNPGSSNYIAKYQ-------------STA--PC--VHGHKKAVSYVK   60 (179)
Q Consensus         2 ~d~~i~vwd~~--~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~-------------~~~--~~--~~~~~~~i~~~~   60 (179)
                      .++.|.+|++.  +++..  ....+...+..++|+|+|+ +++++.             .++  .+  +..+...+..++
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a   92 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA   92 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence            35567777654  45543  2344667788999999996 666542             111  11  234566788899


Q ss_pred             EeeC-CeEEEec-CCCcEEEEecCC-Cc--ceeeecCC---------CCCeEEEEEeeCCCEEEEeccCCcEEEEEcC-C
Q 038439           61 FLSN-DELASAS-TDSTLRLWDVKE-NL--PVRTFRGH---------MNEKNFVGLTVNSEYIACGSESNEVYVYHKE-I  125 (179)
Q Consensus        61 ~~~~-~~l~~~~-~d~~v~iwd~~~-~~--~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~-~  125 (179)
                      |+|+ ++|++++ .++.+.+|++.. +.  .+..+...         ...+.+++|+|+|+++++...++.|.+||+. +
T Consensus        93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~  172 (347)
T 3hfq_A           93 VDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA  172 (347)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC
Confidence            9999 7777776 688999999963 22  22333211         1247789999999966677778999999998 4


Q ss_pred             CccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEE-EeCCCcEEEEeec
Q 038439          126 SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLT-ANSQGTIKVLVLA  178 (179)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~iwd~~  178 (179)
                      ++..........         ....+..++|+|+|+++++ ...++.+.+|++.
T Consensus       173 g~~~~~~~~~~~---------~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~  217 (347)
T 3hfq_A          173 GQLSEQSVLTME---------AGFGPRHLVFSPDGQYAFLAGELSSQIASLKYD  217 (347)
T ss_dssp             SCEEEEEEEECC---------TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CcEEEeeeEEcC---------CCCCCceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            443222111111         0335778999999996666 5568899999875

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.75  E-value=3.6e-16  Score=109.41  Aligned_cols=166  Identities=11%  Similarity=0.161  Sum_probs=109.3

Q ss_pred             CCccEEEEEcCCceeEEee----cC-----------CCceeEEEEcCCCCeEEEEeCCCce-------------------
Q 038439            2 AYGKVKVWCTRQEASVLNI----DM-----------KANICCVKYNPGSSNYIAKYQSTAP-------------------   47 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~----~~-----------~~~v~~~~~~~~~~~~~~~~~~~~~-------------------   47 (179)
                      .+++|.+|++.....+..+    .+           ...+.+++|+|+|+.++++......                   
T Consensus       118 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~  197 (361)
T 3scy_A          118 SGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFL  197 (361)
T ss_dssp             TTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCE
T ss_pred             CCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCccccccee
Confidence            4789999998754322211    11           2235889999999777776511111                   


Q ss_pred             ------e-eecccCceeEEEEeeC-CeEEEec-CCCcEEEEecCCCcc--eeeec---CCCCCeEEEEEeeCCCEEEEec
Q 038439           48 ------C-VHGHKKAVSYVKFLSN-DELASAS-TDSTLRLWDVKENLP--VRTFR---GHMNEKNFVGLTVNSEYIACGS  113 (179)
Q Consensus        48 ------~-~~~~~~~i~~~~~~~~-~~l~~~~-~d~~v~iwd~~~~~~--~~~~~---~~~~~v~~~~~~~~~~~~~~~~  113 (179)
                            . ...+......++|+|+ +++++++ .++.|.+||+.+++.  +..+.   .+......++|+|+|++++++.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~  277 (361)
T 3scy_A          198 TKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASN  277 (361)
T ss_dssp             EEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEE
T ss_pred             ecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEEC
Confidence                  1 1122345678999999 6666665 689999999987643  22222   2234567999999999987666


Q ss_pred             c--CCcEEEEEcC--CCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEe-CCCcEEEEeec
Q 038439          114 E--SNEVYVYHKE--ISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN-SQGTIKVLVLA  178 (179)
Q Consensus       114 ~--d~~v~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~  178 (179)
                      .  ++.|.+|++.  +++.........           ...+..++|+|+|++|++++ .++.|.+|++.
T Consensus       278 ~~~~~~i~v~~~~~~~g~~~~~~~~~~-----------g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          278 RLKADGVAIFKVDETNGTLTKVGYQLT-----------GIHPRNFIITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             CSSSCEEEEEEECTTTCCEEEEEEEEC-----------SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             CCCCCEEEEEEEcCCCCcEEEeeEecC-----------CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence            5  4899999996  344222211110           23467899999999988887 57899997653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.75  E-value=4.6e-17  Score=123.30  Aligned_cols=170  Identities=13%  Similarity=0.181  Sum_probs=113.6

Q ss_pred             CCccEEEEEcCCceeEEeecCCC----ceeEEEEcCCCCeEEEEeCC--------Ccee--e----------ecccCcee
Q 038439            2 AYGKVKVWCTRQEASVLNIDMKA----NICCVKYNPGSSNYIAKYQS--------TAPC--V----------HGHKKAVS   57 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~--------~~~~--~----------~~~~~~i~   57 (179)
                      .|++|++||+.+++....+.+..    .+.+++|||||+.++.+...        ...+  .          ......+.
T Consensus        34 ~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~  113 (719)
T 1z68_A           34 ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQ  113 (719)
T ss_dssp             TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBC
T ss_pred             CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccc
Confidence            58899999999998877776433    39999999999766655421        1122  1          11224578


Q ss_pred             EEEEeeC-CeEEEecCCCcEEEEecCCCcceeee-cCCCCCe-----------------EEEEEeeCCCEEEEeccCC--
Q 038439           58 YVKFLSN-DELASASTDSTLRLWDVKENLPVRTF-RGHMNEK-----------------NFVGLTVNSEYIACGSESN--  116 (179)
Q Consensus        58 ~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~~v-----------------~~~~~~~~~~~~~~~~~d~--  116 (179)
                      .++|+|+ +.|+.++ ++.|++||+.+++..+.. .++...+                 ..++|+|||++|++++.|.  
T Consensus       114 ~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~  192 (719)
T 1z68_A          114 YLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTD  192 (719)
T ss_dssp             CEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTT
T ss_pred             cceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCC
Confidence            8999999 7888775 789999999887765432 2222212                 4799999999999887652  


Q ss_pred             --------------------------------cEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEE
Q 038439          117 --------------------------------EVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTML  164 (179)
Q Consensus       117 --------------------------------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  164 (179)
                                                      .|++||+.+++......+..+   ..... +...+..++|+||++.++
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~SpD~~~~~  268 (719)
T 1z68_A          193 IPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVP---AMIAS-SDYYFSWLTWVTDERVCL  268 (719)
T ss_dssp             SCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCC---HHHHT-SCEEEEEEEESSSSEEEE
T ss_pred             CceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCC---ccCCC-CcceEEEeEEeCCCeEEE
Confidence                                            788999988764311111100   00001 166789999999988777


Q ss_pred             EEeCC----CcEEEEe
Q 038439          165 TANSQ----GTIKVLV  176 (179)
Q Consensus       165 ~~~~d----g~i~iwd  176 (179)
                      +....    ..|.+||
T Consensus       269 ~~~~~~~~~~~l~~~d  284 (719)
T 1z68_A          269 QWLKRVQNVSVLSICD  284 (719)
T ss_dssp             EEEESSTTEEEEEEEE
T ss_pred             EEeccccCeEEEEEEc
Confidence            64432    2488888

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.74  E-value=1.7e-15  Score=105.48  Aligned_cols=173  Identities=9%  Similarity=0.076  Sum_probs=112.6

Q ss_pred             CCccEEEEEcCCcee--EEee-cCCCceeEEEEcCCCCeEEEEeCC-C-----------c--ee--eec---------cc
Q 038439            2 AYGKVKVWCTRQEAS--VLNI-DMKANICCVKYNPGSSNYIAKYQS-T-----------A--PC--VHG---------HK   53 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~~~~~~~-~-----------~--~~--~~~---------~~   53 (179)
                      .++.|.+|++.+++.  +..+ .+...+..++|+|+|+.+++++.. +           .  .+  +..         +.
T Consensus        61 ~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~  140 (347)
T 3hfq_A           61 DEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDG  140 (347)
T ss_dssp             TEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSS
T ss_pred             CCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccC
Confidence            368999999977653  3332 356788999999999777776511 1           1  11  111         11


Q ss_pred             CceeEEEEeeC-CeEEEecCCCcEEEEecC-CCccee--eecC-CCCCeEEEEEeeCCCEEEE-eccCCcEEEEEcCC--
Q 038439           54 KAVSYVKFLSN-DELASASTDSTLRLWDVK-ENLPVR--TFRG-HMNEKNFVGLTVNSEYIAC-GSESNEVYVYHKEI--  125 (179)
Q Consensus        54 ~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~-~~~~~~--~~~~-~~~~v~~~~~~~~~~~~~~-~~~d~~v~vwd~~~--  125 (179)
                      ..+.+++|+|+ ..+++...++.|++|++. +++...  .+.. ....+..++|+|+|+++++ ...++.|.+|++..  
T Consensus       141 ~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~  220 (347)
T 3hfq_A          141 SHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQT  220 (347)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             CCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCC
Confidence            23778999999 766666678899999998 444322  2222 2336788999999996655 56688999999874  


Q ss_pred             CccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEE-EEeCCCcEEEEeec
Q 038439          126 SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTML-TANSQGTIKVLVLA  178 (179)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~iwd~~  178 (179)
                      ++.............    ......+..++|+|+|++|+ +...++.|.+|++.
T Consensus       221 g~~~~~~~~~~~~~~----~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          221 GAFTQLGIVKTIPAD----YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT  270 (347)
T ss_dssp             TEEEEEEEEESSCTT----CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred             CceEEeeeeeecCCC----CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence            432211111111000    00024688999999999875 45568999999985

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.73  E-value=1.1e-16  Score=118.57  Aligned_cols=154  Identities=9%  Similarity=-0.058  Sum_probs=117.3

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe--------------CCCcee-eecccCceeEEEEeeC-Ce
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY--------------QSTAPC-VHGHKKAVSYVKFLSN-DE   66 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--------------~~~~~~-~~~~~~~i~~~~~~~~-~~   66 (179)
                      ++.+.+||+.+++......+..  .+++|+|||+.++.++              .+++.. +..|...+..++|+|| ..
T Consensus       131 ~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~  208 (582)
T 3o4h_A          131 EDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKV  208 (582)
T ss_dssp             SSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCE
T ss_pred             CCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCE
Confidence            3445599999887766555444  8999999997666554              123333 6677788899999999 88


Q ss_pred             EEEecCCC--cEEEEecCCCcceeeecCCCCCeEEEE--------EeeCCCEEEEeccCCcEEEEEcCCCccccccccCC
Q 038439           67 LASASTDS--TLRLWDVKENLPVRTFRGHMNEKNFVG--------LTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSS  136 (179)
Q Consensus        67 l~~~~~d~--~v~iwd~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~  136 (179)
                      |+++..++  .|++||+.+++.. .+..+...+..++        |+|||.++++++.++.+++|++  ++...  ..  
T Consensus       209 l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~--~~--  281 (582)
T 3o4h_A          209 TAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE--AP--  281 (582)
T ss_dssp             EEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC--CC--
T ss_pred             EEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec--cC--
Confidence            88888888  8999999988776 6666766666666        9999988899999999999999  54432  11  


Q ss_pred             CCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCc---EEEEee
Q 038439          137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGT---IKVLVL  177 (179)
Q Consensus       137 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~---i~iwd~  177 (179)
                                 ...+.+++|+ +++++++++.+..   +.+||+
T Consensus       282 -----------~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~  313 (582)
T 3o4h_A          282 -----------QGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPS  313 (582)
T ss_dssp             -----------SSEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred             -----------CCceEEEEec-CCEEEEEEcCCCCCCeEEEEcC
Confidence                       4468899999 9999888887644   666654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.73  E-value=1e-16  Score=121.38  Aligned_cols=162  Identities=13%  Similarity=0.086  Sum_probs=111.6

Q ss_pred             CccEEEEEcCCceeEEeec----CCCceeEEEEcCCCCeEEEEe---------CCCcee--eecccCce-----------
Q 038439            3 YGKVKVWCTRQEASVLNID----MKANICCVKYNPGSSNYIAKY---------QSTAPC--VHGHKKAV-----------   56 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~---------~~~~~~--~~~~~~~i-----------   56 (179)
                      ++.|.+||+.+++. ..+.    +...+..++|||+|+.++.+.         ..++..  ...+...+           
T Consensus        90 ~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~  168 (723)
T 1xfd_A           90 TGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYE  168 (723)
T ss_dssp             CSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHH
T ss_pred             eeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEE
Confidence            58899999998876 3332    333489999999997776665         223333  22333323           


Q ss_pred             -------eEEEEeeC-CeEEEecCCC----------------------------------cEEEEecCCCcceeeecCC-
Q 038439           57 -------SYVKFLSN-DELASASTDS----------------------------------TLRLWDVKENLPVRTFRGH-   93 (179)
Q Consensus        57 -------~~~~~~~~-~~l~~~~~d~----------------------------------~v~iwd~~~~~~~~~~~~~-   93 (179)
                             .++.|+|+ +.|++++.++                                  .|++||+.+++....+..+ 
T Consensus       169 ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~  248 (723)
T 1xfd_A          169 EEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPD  248 (723)
T ss_dssp             HTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCC
T ss_pred             EEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCc
Confidence                   78999999 8888877543                                  7999999988765666543 


Q ss_pred             -----CCCeEEEEEeeCCCEEEEecc----CCcEEEEEcCCCccccccccCCCCCCCCcccCCcceE----EEEEEccCC
Q 038439           94 -----MNEKNFVGLTVNSEYIACGSE----SNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFI----SAVCWKSDS  160 (179)
Q Consensus        94 -----~~~v~~~~~~~~~~~~~~~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~~~~~~~~  160 (179)
                           ...+..++|+|||+++++...    +..|++||+.+++.........           ...+    ..++|+|||
T Consensus       249 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~-----------~~~~~~~~~~~~~spdg  317 (723)
T 1xfd_A          249 DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES-----------EAWLHRQNEEPVFSKDG  317 (723)
T ss_dssp             CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC-----------SSCCCCCCCCCEECTTS
T ss_pred             cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc-----------CCEEeccCCCceEcCCC
Confidence                 456889999999998876643    3579999999887654432110           1122    367899999


Q ss_pred             CeEEE--EeCCC------cEEEEe
Q 038439          161 PTMLT--ANSQG------TIKVLV  176 (179)
Q Consensus       161 ~~l~~--~~~dg------~i~iwd  176 (179)
                      +.|+.  +..++      .|.+||
T Consensus       318 ~~l~~~~~~~~~~~~~~~~l~~~d  341 (723)
T 1xfd_A          318 RKFFFIRAIPQGGRGKFYHITVSS  341 (723)
T ss_dssp             CSEEEEEEECCSSSSCEEEEEEEC
T ss_pred             CeEEEEEecccCCCcceeEEEEEe
Confidence            98775  44566      466666

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.71  E-value=3.4e-15  Score=104.84  Aligned_cols=167  Identities=13%  Similarity=0.106  Sum_probs=110.8

Q ss_pred             CCccEEEEEcC-CceeEEeec-----CCCceeEEEEcCCCCeEEEEe-----------C-CCcee----ee--cccCcee
Q 038439            2 AYGKVKVWCTR-QEASVLNID-----MKANICCVKYNPGSSNYIAKY-----------Q-STAPC----VH--GHKKAVS   57 (179)
Q Consensus         2 ~d~~i~vwd~~-~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~-----------~-~~~~~----~~--~~~~~i~   57 (179)
                      .+|++.+|++. +++....+.     +...+.+++|+|+|+.++++.           . .++..    +.  .|...+.
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~  196 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence            47899999997 465543332     456799999999997666654           2 23222    11  1345678


Q ss_pred             EEEEeeC-CeEEEec-CCCcEEEEecC--CCcce---eeec---C----CCC------CeEEEE-EeeCCCEEEEeccC-
Q 038439           58 YVKFLSN-DELASAS-TDSTLRLWDVK--ENLPV---RTFR---G----HMN------EKNFVG-LTVNSEYIACGSES-  115 (179)
Q Consensus        58 ~~~~~~~-~~l~~~~-~d~~v~iwd~~--~~~~~---~~~~---~----~~~------~v~~~~-~~~~~~~~~~~~~d-  115 (179)
                      .++|+|+ +++++++ .++.|.+|++.  +++..   ..+.   .    +..      .+..++ |+|||++++++..+ 
T Consensus       197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~  276 (365)
T 1jof_A          197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence            8999999 7777665 47899999865  45432   1221   1    121      478899 99999998876543 


Q ss_pred             C-----cEEEEEcC-CCccccccc-cCCCCCCCCcccCCcceEEEEEEcc---CCCeEEEEeCC-CcEEEEeec
Q 038439          116 N-----EVYVYHKE-ISKPVTWHR-FSSPDMDDTDEDAGSYFISAVCWKS---DSPTMLTANSQ-GTIKVLVLA  178 (179)
Q Consensus       116 ~-----~v~vwd~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d-g~i~iwd~~  178 (179)
                      +     .|.+|++. +++...... ....          ...+..++|+|   +|++|++++.+ +.|.+|++.
T Consensus       277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~----------~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~  340 (365)
T 1jof_A          277 KFELQGYIAGFKLRDCGSIEKQLFLSPTP----------TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             STTSCCEEEEEEECTTSCEEEEEEEEECS----------SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             CCCCCCeEEEEEECCCCCEEEeeeeeecC----------CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence            2     89999996 454332111 1100          22345688999   89999998874 899999875

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.70  E-value=3.1e-15  Score=113.86  Aligned_cols=172  Identities=11%  Similarity=0.139  Sum_probs=111.3

Q ss_pred             CccEEEEEcCCceeEEeecCCC------ceeEEEEcCCCCeEEEEeC-------------------CCcee-eecccCce
Q 038439            3 YGKVKVWCTRQEASVLNIDMKA------NICCVKYNPGSSNYIAKYQ-------------------STAPC-VHGHKKAV   56 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~~~~~-------------------~~~~~-~~~~~~~i   56 (179)
                      |++|++||+.++++...+....      ....++|||||+.++....                   +++.. +..|...+
T Consensus        35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~  114 (740)
T 4a5s_A           35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNT  114 (740)
T ss_dssp             TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTE
T ss_pred             CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcc
Confidence            7899999999998776665221      2345899999976666551                   22222 55667789


Q ss_pred             eEEEEeeC-CeEEEecCCCcEEEEecCCCcceee-ecCCCCCe-----------------EEEEEeeCCCEEEEeccCC-
Q 038439           57 SYVKFLSN-DELASASTDSTLRLWDVKENLPVRT-FRGHMNEK-----------------NFVGLTVNSEYIACGSESN-  116 (179)
Q Consensus        57 ~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~-~~~~~~~v-----------------~~~~~~~~~~~~~~~~~d~-  116 (179)
                      ...+|||| ..|+.++ ++.|.+||+.+++..+. ..++...+                 ..+.|+|||++|+.++.|. 
T Consensus       115 ~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~  193 (740)
T 4a5s_A          115 QWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDT  193 (740)
T ss_dssp             EEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECT
T ss_pred             eeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEccc
Confidence            99999999 7787774 68999999988765432 22222222                 3489999999998775332 


Q ss_pred             -----------------------------------cEEEEEcCC---CccccccccCCCCCCCCcccCCcceEEEEEEcc
Q 038439          117 -----------------------------------EVYVYHKEI---SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKS  158 (179)
Q Consensus       117 -----------------------------------~v~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  158 (179)
                                                         .|++||+.+   ++.+....+..+.   .... +...+..++|+|
T Consensus       194 ~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~---~~~~-~~~~~~~~~wsp  269 (740)
T 4a5s_A          194 EVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA---SMLI-GDHYLCDVTWAT  269 (740)
T ss_dssp             TCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH---HHHT-SCEEEEEEEEEE
T ss_pred             CCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc---cCCC-CCeEEEEEEEeC
Confidence                                               366677776   5321111111100   0000 266789999999


Q ss_pred             CCCeEEEEeC----CCcEEEEeecC
Q 038439          159 DSPTMLTANS----QGTIKVLVLAA  179 (179)
Q Consensus       159 ~~~~l~~~~~----dg~i~iwd~~~  179 (179)
                      ||+.++....    +..|.+||+.+
T Consensus       270 dg~~~~~~~~r~~~~~~i~~~d~~t  294 (740)
T 4a5s_A          270 QERISLQWLRRIQNYSVMDICDYDE  294 (740)
T ss_dssp             TTEEEEEEEESSTTEEEEEEEEEET
T ss_pred             CCeEEEEEeCCCCCEEEEEEEECCC
Confidence            9996665433    33699999753

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.65  E-value=1.6e-13  Score=93.10  Aligned_cols=161  Identities=11%  Similarity=0.115  Sum_probs=114.6

Q ss_pred             CccEEEEEcCCceeEEeec--CCCceeEEEEcCCCCeEEEEe----------CCCcee--ee--cccCceeEEEEeeC-C
Q 038439            3 YGKVKVWCTRQEASVLNID--MKANICCVKYNPGSSNYIAKY----------QSTAPC--VH--GHKKAVSYVKFLSN-D   65 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~--~~~~~i~~~~~~~~-~   65 (179)
                      ++.|.+|| .+++.+..+.  ....+.+++++|++. ++++.          ..++.+  +.  .+...+..++++|+ .
T Consensus        99 ~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~  176 (286)
T 1q7f_A           99 THQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE  176 (286)
T ss_dssp             GCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE
T ss_pred             CCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCC
Confidence            67889999 5666666664  345789999999995 55553          122222  21  34456789999999 6


Q ss_pred             eEEEecCCCcEEEEecCCCcceeeecCC--CCCeEEEEEeeCCCEEEEeccCC-cEEEEEcCCCccccccccCCCCCCCC
Q 038439           66 ELASASTDSTLRLWDVKENLPVRTFRGH--MNEKNFVGLTVNSEYIACGSESN-EVYVYHKEISKPVTWHRFSSPDMDDT  142 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~d~-~v~vwd~~~~~~~~~~~~~~~~~~~~  142 (179)
                      .+++.+.++.|++||.. ++.+..+...  ...+..++++++|+++++...++ .|.+||.. ++.+..+.....     
T Consensus       177 l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~-----  249 (286)
T 1q7f_A          177 IFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVK-----  249 (286)
T ss_dssp             EEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSC-----
T ss_pred             EEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCC-----
Confidence            66777778999999974 5556666433  35688999999999888887776 99999964 554444432111     


Q ss_pred             cccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          143 DEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                           ...+..++++|+|+++++ +.++.|++|++.
T Consensus       250 -----~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~  279 (286)
T 1q7f_A          250 -----HAQCFDVALMDDGSVVLA-SKDYRLYIYRYV  279 (286)
T ss_dssp             -----CSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred             -----CCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence                 234788999999986666 679999999874

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.65  E-value=2.6e-13  Score=94.90  Aligned_cols=167  Identities=7%  Similarity=0.062  Sum_probs=106.6

Q ss_pred             CccEEEEEcCC--cee--EEeec-CCCceeEEEEcCCCCeEEEEeCCCcee----ee------------cc---------
Q 038439            3 YGKVKVWCTRQ--EAS--VLNID-MKANICCVKYNPGSSNYIAKYQSTAPC----VH------------GH---------   52 (179)
Q Consensus         3 d~~i~vwd~~~--~~~--~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~------------~~---------   52 (179)
                      ++.|.+|++..  ++.  +.... +...+..+++  +++.++++......+    +.            .+         
T Consensus        74 ~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~  151 (361)
T 3scy_A           74 QAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKER  151 (361)
T ss_dssp             TCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTT
T ss_pred             CCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccc
Confidence            47999998765  433  33333 4556777888  776666665111111    10            01         


Q ss_pred             --cCceeEEEEeeC-CeEEE-ecCCCcEEEEecCCCcc------e-------eeecCCCCCeEEEEEeeCCCEEEEec-c
Q 038439           53 --KKAVSYVKFLSN-DELAS-ASTDSTLRLWDVKENLP------V-------RTFRGHMNEKNFVGLTVNSEYIACGS-E  114 (179)
Q Consensus        53 --~~~i~~~~~~~~-~~l~~-~~~d~~v~iwd~~~~~~------~-------~~~~~~~~~v~~~~~~~~~~~~~~~~-~  114 (179)
                        ...+.+++|+|+ +++++ ...++.|++|++.....      +       .........+..++|+|+|+++++++ .
T Consensus       152 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~  231 (361)
T 3scy_A          152 QTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI  231 (361)
T ss_dssp             CSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT
T ss_pred             cCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC
Confidence              122477999999 65554 44588999999875431      1       11123345678999999999887766 6


Q ss_pred             CCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCC--CcEEEEeec
Q 038439          115 SNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQ--GTIKVLVLA  178 (179)
Q Consensus       115 d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~iwd~~  178 (179)
                      ++.|.+||+.+++...........      . +...+..++|+|+|++|+++..+  +.|.+|++.
T Consensus       232 ~~~v~v~~~~~g~~~~~~~~~~~~------~-~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          232 GGTVIAFRYADGMLDEIQTVAADT------V-NAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             TCEEEEEEEETTEEEEEEEEESCS------S-CCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             CCeEEEEEecCCceEEeEEEecCC------C-CCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            899999999876542222111110      0 13446899999999998776664  899999984

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.64  E-value=1.9e-15  Score=114.45  Aligned_cols=165  Identities=10%  Similarity=0.057  Sum_probs=107.5

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe---------CCCcee---eecccCce--------------
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY---------QSTAPC---VHGHKKAV--------------   56 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------~~~~~~---~~~~~~~i--------------   56 (179)
                      |+.|++||+.+++.+........+..++|||||+.++.+.         ..++..   ..++...|              
T Consensus        89 ~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~  168 (719)
T 1z68_A           89 TATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEML  168 (719)
T ss_dssp             EEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTT
T ss_pred             ceEEEEEECCCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecc
Confidence            6899999999988732222346789999999997766654         122222   12222212              


Q ss_pred             ---eEEEEeeC-CeEEEecCCC----------------------------------cEEEEecCCCcce--------eee
Q 038439           57 ---SYVKFLSN-DELASASTDS----------------------------------TLRLWDVKENLPV--------RTF   90 (179)
Q Consensus        57 ---~~~~~~~~-~~l~~~~~d~----------------------------------~v~iwd~~~~~~~--------~~~   90 (179)
                         .++.|+|| ..|++++.|.                                  .|++||+.+++..        ..+
T Consensus       169 ~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~  248 (719)
T 1z68_A          169 ATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMI  248 (719)
T ss_dssp             CSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHH
T ss_pred             cCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccC
Confidence               48999999 8888877552                                  7889999887643        123


Q ss_pred             cCCCCCeEEEEEeeCCCEEEEeccC----CcEEEEE----cCCCccccccc--cCCCCCCCCcccCCcceEE-----EEE
Q 038439           91 RGHMNEKNFVGLTVNSEYIACGSES----NEVYVYH----KEISKPVTWHR--FSSPDMDDTDEDAGSYFIS-----AVC  155 (179)
Q Consensus        91 ~~~~~~v~~~~~~~~~~~~~~~~~d----~~v~vwd----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~-----~~~  155 (179)
                      ..+...+..++|+||++++++....    ..|.+||    +.+++......  ...+          ...+.     .+.
T Consensus       249 ~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~~  318 (719)
T 1z68_A          249 ASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR----------TGWAGGFFVSTPV  318 (719)
T ss_dssp             HTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS----------SSCSSSSSCCCCE
T ss_pred             CCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccC----------CceEccccCCccE
Confidence            3567778999999998777764432    2488899    77776554431  0011          22333     678


Q ss_pred             EccCCCeEEE--EeCCCc--EEEEee
Q 038439          156 WKSDSPTMLT--ANSQGT--IKVLVL  177 (179)
Q Consensus       156 ~~~~~~~l~~--~~~dg~--i~iwd~  177 (179)
                      |+|+|+.++.  ...+|.  |.+||+
T Consensus       319 ~spdg~~l~~~~~~~~g~~~l~~~~~  344 (719)
T 1z68_A          319 FSYDAISYYKIFSDKDGYKHIHYIKD  344 (719)
T ss_dssp             ECTTSSCEEEEEECTTSCEEEEEESS
T ss_pred             ECCCCCeEEEEEEccCCceEEEEEEC
Confidence            9999996654  445664  555554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.63  E-value=5e-14  Score=95.38  Aligned_cols=162  Identities=9%  Similarity=0.058  Sum_probs=121.3

Q ss_pred             CCCccEEEEEcCCceeEEeecCC--CceeEEEEcCCCCeEEEEe--------CCCcee--eecc-cCceeEEEEeeC-Ce
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMK--ANICCVKYNPGSSNYIAKY--------QSTAPC--VHGH-KKAVSYVKFLSN-DE   66 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~--------~~~~~~--~~~~-~~~i~~~~~~~~-~~   66 (179)
                      +.|+.|.+||.++++.+..+...  ..+.++.+.|+|+ ++++.        .+++.+  +..+ ...+.++.+.++ +.
T Consensus        12 ~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~-ilvs~~~~V~~~d~~G~~~W~~~~~~~~~~~~~~~~~dG~~   90 (276)
T 3no2_A           12 SGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGE-ILFSYSKGAKMITRDGRELWNIAAPAGCEMQTARILPDGNA   90 (276)
T ss_dssp             TTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSC-EEEECBSEEEEECTTSCEEEEEECCTTCEEEEEEECTTSCE
T ss_pred             CCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCC-EEEeCCCCEEEECCCCCEEEEEcCCCCccccccEECCCCCE
Confidence            46899999999999999888754  4789999999995 44454        345555  4443 346788889999 78


Q ss_pred             EEEecC-CCcEEEEecCCCcceeeecC------CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCC
Q 038439           67 LASAST-DSTLRLWDVKENLPVRTFRG------HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDM  139 (179)
Q Consensus        67 l~~~~~-d~~v~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~  139 (179)
                      +++.+. ++.+..+|. +++.+..+..      +......+++.++|+++++...++.|.+||.. ++.+..+...    
T Consensus        91 lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~----  164 (276)
T 3no2_A           91 LVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS----  164 (276)
T ss_dssp             EEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS----
T ss_pred             EEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC----
Confidence            887776 777777775 5776666542      11234556788999999999999999999998 8887766542    


Q ss_pred             CCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          140 DDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       140 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                               ..+..+...++++.++++..+++|..+|..
T Consensus       165 ---------~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~  194 (276)
T 3no2_A          165 ---------GTPFSSAFLDNGDCLVACGDAHCFVQLNLE  194 (276)
T ss_dssp             ---------SCCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred             ---------CCccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence                     234456678899999988888889888865

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.63  E-value=2.7e-14  Score=107.26  Aligned_cols=163  Identities=10%  Similarity=0.031  Sum_probs=110.9

Q ss_pred             CCccEEEEEcCCceeEEee-cCCCcee---------EEEEc--CCCCe-EEEEe---------C-C----Ccee-eec--
Q 038439            2 AYGKVKVWCTRQEASVLNI-DMKANIC---------CVKYN--PGSSN-YIAKY---------Q-S----TAPC-VHG--   51 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~-~~~~~v~---------~~~~~--~~~~~-~~~~~---------~-~----~~~~-~~~--   51 (179)
                      .++...||....+.....+ .+...+.         ...|+  |||+. ++.+.         + .    ++.. +..  
T Consensus        45 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~  124 (662)
T 3azo_A           45 EAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS  124 (662)
T ss_dssp             TTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCC
T ss_pred             cCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCc
Confidence            4678899985433333333 3545555         66666  99977 55554         1 1    2222 333  


Q ss_pred             ---ccCceeEEEEeeC-CeEEEecCC----------CcEEEEecCC------Ccceeeec-CCCCCeEEEEEeeCCCEEE
Q 038439           52 ---HKKAVSYVKFLSN-DELASASTD----------STLRLWDVKE------NLPVRTFR-GHMNEKNFVGLTVNSEYIA  110 (179)
Q Consensus        52 ---~~~~i~~~~~~~~-~~l~~~~~d----------~~v~iwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~~  110 (179)
                         |...+..++|+|+ +.|++++.+          ..|++||+.+      ++ ...+. .+...+..++|+|||++|+
T Consensus       125 ~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpDG~~la  203 (662)
T 3azo_A          125 AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLSPDGRQAV  203 (662)
T ss_dssp             CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEECTTSSEEE
T ss_pred             cCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceECCCCCEEE
Confidence               5567889999999 888888776          5899999987      44 34454 5556677889999999998


Q ss_pred             EeccC--------CcEEEEEcC-CC---ccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCC--cEEEEe
Q 038439          111 CGSES--------NEVYVYHKE-IS---KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG--TIKVLV  176 (179)
Q Consensus       111 ~~~~d--------~~v~vwd~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~iwd  176 (179)
                      .++.+        ..|++||+. ++   +.......            +...+..+.|+|||++++++..++  .|.+||
T Consensus       204 ~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~------------~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~  271 (662)
T 3azo_A          204 WLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG------------PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVD  271 (662)
T ss_dssp             EEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE------------TTBCEEEEEECTTSCEEEEECTTSSCEEEEEC
T ss_pred             EEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC------------CCceEcceEECCCCeEEEEECCCCCeEEEEEE
Confidence            77754        379999998 46   22222111            145688999999999888888888  455555


Q ss_pred             e
Q 038439          177 L  177 (179)
Q Consensus       177 ~  177 (179)
                      +
T Consensus       272 ~  272 (662)
T 3azo_A          272 P  272 (662)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.62  E-value=6.8e-14  Score=98.22  Aligned_cols=167  Identities=11%  Similarity=0.047  Sum_probs=107.5

Q ss_pred             ccEEEEEc--CCceeEE--eec--CCCceeEEEEcCCCCeEEEEeC----------CCcee-eeccc--CceeEEEEeeC
Q 038439            4 GKVKVWCT--RQEASVL--NID--MKANICCVKYNPGSSNYIAKYQ----------STAPC-VHGHK--KAVSYVKFLSN   64 (179)
Q Consensus         4 ~~i~vwd~--~~~~~~~--~~~--~~~~v~~~~~~~~~~~~~~~~~----------~~~~~-~~~~~--~~i~~~~~~~~   64 (179)
                      +.|.+|++  .+++...  ...  ....+..++|+|+++.++++..          .++.. ...+.  +....++|+|+
T Consensus        14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spd   93 (365)
T 1jof_A           14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTN   93 (365)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSC
T ss_pred             CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCC
Confidence            46777764  4555422  222  3347889999999976666542          22222 11111  22445778888


Q ss_pred             -Ce--EEEec-------------CCCcEEEEecC-CCcceeeec----CCCCCeEEEEEeeCCCEEEEec-cCCcEEEEE
Q 038439           65 -DE--LASAS-------------TDSTLRLWDVK-ENLPVRTFR----GHMNEKNFVGLTVNSEYIACGS-ESNEVYVYH  122 (179)
Q Consensus        65 -~~--l~~~~-------------~d~~v~iwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~-~d~~v~vwd  122 (179)
                       +.  +++++             .++.+.+|++. +++....+.    .+...+..++|+|+|++++++. .++.|.+||
T Consensus        94 g~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~  173 (365)
T 1jof_A           94 TRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHR  173 (365)
T ss_dssp             CEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEE
Confidence             53  44553             68899999997 455443333    2445788999999999887765 367999999


Q ss_pred             cC-CCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEeec
Q 038439          123 KE-ISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVLA  178 (179)
Q Consensus       123 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~  178 (179)
                      +. +++.........+       . +...+..++|+|+|+++++++. ++.|.+|++.
T Consensus       174 ~~~~g~~~~~~~~~~~-------~-~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~  223 (365)
T 1jof_A          174 KLASGEVELVGSVDAP-------D-PGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             ECTTSCEEEEEEEECS-------S-TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             ECCCCCEEEeeeEecC-------C-CCCCCCEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence            98 6654322111100       0 0345889999999999988775 7899999764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.62  E-value=7.9e-14  Score=97.85  Aligned_cols=86  Identities=8%  Similarity=-0.023  Sum_probs=54.2

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe--------------------CCCcee--eec------ccC
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY--------------------QSTAPC--VHG------HKK   54 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--------------------~~~~~~--~~~------~~~   54 (179)
                      |+.|.+||..+++.+..+...... .++|+|+++.++++.                    .+.+.+  +..      +..
T Consensus        30 d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~  108 (361)
T 2oiz_A           30 ESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLN  108 (361)
T ss_dssp             GCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCC
T ss_pred             cCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCC
Confidence            678888888888877777654444 888888887776653                    111111  111      112


Q ss_pred             ceeEEEEeeC-CeEEEecC--CCcEEEEecCCCcceee
Q 038439           55 AVSYVKFLSN-DELASAST--DSTLRLWDVKENLPVRT   89 (179)
Q Consensus        55 ~i~~~~~~~~-~~l~~~~~--d~~v~iwd~~~~~~~~~   89 (179)
                      ....++++|+ ++++++..  ++.|.+||+.+++.+..
T Consensus       109 ~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~  146 (361)
T 2oiz_A          109 YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED  146 (361)
T ss_dssp             CGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred             CcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence            3446778888 67766653  56788888776655444

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.61  E-value=2.9e-14  Score=108.52  Aligned_cols=165  Identities=10%  Similarity=0.042  Sum_probs=106.3

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe---------CCCcee---eecccCce---------------
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY---------QSTAPC---VHGHKKAV---------------   56 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------~~~~~~---~~~~~~~i---------------   56 (179)
                      +.+.+||+.+++......+...+...+|||||+.++.+.         ..++..   ..++...+               
T Consensus        92 ~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~  171 (740)
T 4a5s_A           92 ASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS  171 (740)
T ss_dssp             EEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred             eEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcC
Confidence            677899999998765445678899999999998776654         122222   22222222               


Q ss_pred             --eEEEEeeC-CeEEEecCCC------------------------------------cEEEEecCC---Cc--ceeeecC
Q 038439           57 --SYVKFLSN-DELASASTDS------------------------------------TLRLWDVKE---NL--PVRTFRG   92 (179)
Q Consensus        57 --~~~~~~~~-~~l~~~~~d~------------------------------------~v~iwd~~~---~~--~~~~~~~   92 (179)
                        ..+.|+|| ..|+.++.|.                                    .|++||+.+   ++  ....+..
T Consensus       172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~  251 (740)
T 4a5s_A          172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA  251 (740)
T ss_dssp             SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC
T ss_pred             CCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC
Confidence              34889999 7788765321                                    478899887   63  2333332


Q ss_pred             ------CCCCeEEEEEeeCCCEEEEecc----CCcEEEEEcCCCc----ccccccc--CCCCCCCCcccCCcce-----E
Q 038439           93 ------HMNEKNFVGLTVNSEYIACGSE----SNEVYVYHKEISK----PVTWHRF--SSPDMDDTDEDAGSYF-----I  151 (179)
Q Consensus        93 ------~~~~v~~~~~~~~~~~~~~~~~----d~~v~vwd~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~-----i  151 (179)
                            +...+..++|+|||+.++....    +..|.+||+.+++    +.....+  ..+          ...     .
T Consensus       252 ~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~----------~~~v~~~~~  321 (740)
T 4a5s_A          252 PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST----------TGWVGRFRP  321 (740)
T ss_dssp             CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS----------SSCSSSSSC
T ss_pred             CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC----------CceEccCcC
Confidence                  5667889999999997665432    3479999999987    2222211  111          112     2


Q ss_pred             EEEEEccCCCeEE-EEe-CCC--cEEEEeec
Q 038439          152 SAVCWKSDSPTML-TAN-SQG--TIKVLVLA  178 (179)
Q Consensus       152 ~~~~~~~~~~~l~-~~~-~dg--~i~iwd~~  178 (179)
                      ..+.|+|||+.++ ..+ .+|  .|++||+.
T Consensus       322 ~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~  352 (740)
T 4a5s_A          322 SEPHFTLDGNSFYKIISNEEGYRHICYFQID  352 (740)
T ss_dssp             CCCEECTTSSEEEEEEECTTSCEEEEEEETT
T ss_pred             CCceEcCCCCEEEEEEEcCCCceEEEEEECC
Confidence            3578999999876 555 444  46666653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.59  E-value=3.8e-13  Score=93.18  Aligned_cols=164  Identities=9%  Similarity=0.060  Sum_probs=114.1

Q ss_pred             CccEEEEEcCCceeEEeec--CCCceeEEEEcCCCCeEEEEe----------CCCc--ee--e---------ecccCcee
Q 038439            3 YGKVKVWCTRQEASVLNID--MKANICCVKYNPGSSNYIAKY----------QSTA--PC--V---------HGHKKAVS   57 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~----------~~~~--~~--~---------~~~~~~i~   57 (179)
                      +++|.+||..+++.+..+.  +-..+..++++|+|. ++++.          ..++  .+  +         .++.....
T Consensus        68 ~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~  146 (329)
T 3fvz_A           68 EDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPT  146 (329)
T ss_dssp             SCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEE
T ss_pred             CCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCc
Confidence            4689999999888877665  335789999999995 55554          1122  12  2         23334678


Q ss_pred             EEEEee-C-CeEEEec-CCCcEEEEecCCCcceeeecCC----------CCCeEEEEEeeC-CCEEEEeccCCcEEEEEc
Q 038439           58 YVKFLS-N-DELASAS-TDSTLRLWDVKENLPVRTFRGH----------MNEKNFVGLTVN-SEYIACGSESNEVYVYHK  123 (179)
Q Consensus        58 ~~~~~~-~-~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~----------~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~  123 (179)
                      .++++| + ..+++.+ .++.|++|| .+++.+..+...          ......++++|+ +.++++...++.|++||.
T Consensus       147 ~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~  225 (329)
T 3fvz_A          147 DVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKT  225 (329)
T ss_dssp             EEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEEC
Confidence            999999 5 6666665 589999999 556666666422          223789999998 777778788999999999


Q ss_pred             CCCccccccccCCCCCCCCcccCCcceEEEEEEcc------CCCeEEEEeCCCcEEEEeec
Q 038439          124 EISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKS------DSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .+++.+..+.....          ...+..++++|      +++..++...+..|++||+.
T Consensus       226 ~~G~~~~~~~~~~~----------~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~  276 (329)
T 3fvz_A          226 DTKEFVREIKHASF----------GRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFS  276 (329)
T ss_dssp             TTCCEEEEECCTTT----------TTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETT
T ss_pred             CCCcEEEEEecccc----------CCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcC
Confidence            98877766543222          45677888888      44444444445688888854

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.57  E-value=1.3e-13  Score=103.60  Aligned_cols=170  Identities=6%  Similarity=-0.056  Sum_probs=108.0

Q ss_pred             CccEEEEEcC--C-ceeEEeec-----CCCceeEEEEcCCCCeEEEEeCC--------------------------Ccee
Q 038439            3 YGKVKVWCTR--Q-EASVLNID-----MKANICCVKYNPGSSNYIAKYQS--------------------------TAPC   48 (179)
Q Consensus         3 d~~i~vwd~~--~-~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~--------------------------~~~~   48 (179)
                      +..|.++++.  . ++......     +...+.+++|+|+|+.++++...                          ++..
T Consensus       101 ~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  180 (662)
T 3azo_A          101 DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR  180 (662)
T ss_dssp             TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE
T ss_pred             CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee
Confidence            3456666665  2 44333223     45678999999999877666421                          1111


Q ss_pred             -ee-cccCceeEEEEeeC-CeEEEecCC--------CcEEEEecC-CC---cceeeecCCCCCeEEEEEeeCCCEEEEec
Q 038439           49 -VH-GHKKAVSYVKFLSN-DELASASTD--------STLRLWDVK-EN---LPVRTFRGHMNEKNFVGLTVNSEYIACGS  113 (179)
Q Consensus        49 -~~-~~~~~i~~~~~~~~-~~l~~~~~d--------~~v~iwd~~-~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  113 (179)
                       +. .+...+..++|+|| +.|+.++.+        ..|++||+. ++   +.......+...+..+.|+|||++++++.
T Consensus       181 ~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~  260 (662)
T 3azo_A          181 ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATD  260 (662)
T ss_dssp             ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEEC
T ss_pred             EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEEC
Confidence             22 33455677899999 788877644        379999998 56   33333344467789999999999888888


Q ss_pred             cCC--cEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          114 ESN--EVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       114 ~d~--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      .++  .|.+||+.+++........... ..  ..- ...+..++|+|+++++++++. +.++||.+
T Consensus       261 ~~~~~~l~~~~~~~~~~~~l~~~~~~~-~~--p~w-~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~  321 (662)
T 3azo_A          261 RTGWWNLHRVDPATGAATQLCRREEEF-AG--PLW-TPGMRWFAPLANGLIAVVHGK-GAAVLGIL  321 (662)
T ss_dssp             TTSSCEEEEECTTTCCEEESSCCSSBS-SC--CCC-STTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred             CCCCeEEEEEECCCCceeecccccccc-cC--ccc-cccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence            888  5666676666543322211000 00  000 111456889999999999998 99999943

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.55  E-value=3.7e-14  Score=99.91  Aligned_cols=173  Identities=9%  Similarity=0.050  Sum_probs=103.9

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcC-CCCeEEEEeCC-----Ccee------------eeccc--CceeEEEEe
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNP-GSSNYIAKYQS-----TAPC------------VHGHK--KAVSYVKFL   62 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~-----~~~~------------~~~~~--~~i~~~~~~   62 (179)
                      +..|.+||+.+++......+...+..++|+| +|..++.+...     ...+            +..+.  ..+..+.|+
T Consensus       167 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~s  246 (388)
T 3pe7_A          167 CCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWV  246 (388)
T ss_dssp             CEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEEC
T ss_pred             cceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceEC
Confidence            4679999999988766667777899999999 98666555421     1111            22222  246778999


Q ss_pred             eC-CeEEEecC-CC----cEEEEecCCCccee--eecCCCC---CeEEEEEeeCCCEEEEe---------ccCCcEEEEE
Q 038439           63 SN-DELASAST-DS----TLRLWDVKENLPVR--TFRGHMN---EKNFVGLTVNSEYIACG---------SESNEVYVYH  122 (179)
Q Consensus        63 ~~-~~l~~~~~-d~----~v~iwd~~~~~~~~--~~~~~~~---~v~~~~~~~~~~~~~~~---------~~d~~v~vwd  122 (179)
                      |+ ..|+..+. ++    .|.+||+.+++...  .+..+..   ....+.|+|||+.++..         ..+..|++||
T Consensus       247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d  326 (388)
T 3pe7_A          247 PDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFN  326 (388)
T ss_dssp             TTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEE
T ss_pred             CCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEe
Confidence            99 66655433 22    39999999876432  2222100   01123699999987753         4467899999


Q ss_pred             cCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEee
Q 038439          123 KEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVL  177 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~  177 (179)
                      +.+++.......... ..... ......+..++|+|||+.|+..+. +|...||.+
T Consensus       327 ~~~~~~~~l~~~~~~-~~~~~-~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          327 MKNGTQHRVARHDTS-WKVFE-GDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             TTTTEEEEEEECCCC-CCCBT-TBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             ccCCceEEeccccCc-ccccc-cccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence            998765332221100 00000 000113677899999998876664 677767654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.54  E-value=7.9e-12  Score=84.69  Aligned_cols=162  Identities=9%  Similarity=0.044  Sum_probs=112.1

Q ss_pred             CCccEEEEEcCCceeEEeecC-------CCceeEEEE-cCCCCeEEEEeC-----------CCcee--ee-cccCceeEE
Q 038439            2 AYGKVKVWCTRQEASVLNIDM-------KANICCVKY-NPGSSNYIAKYQ-----------STAPC--VH-GHKKAVSYV   59 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~-------~~~v~~~~~-~~~~~~~~~~~~-----------~~~~~--~~-~~~~~i~~~   59 (179)
                      .++.|.+||.. ++.+..+..       ...+..+++ .+++ .++++..           .++.+  +. .+...+..+
T Consensus        49 ~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g-~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i  126 (286)
T 1q7f_A           49 NNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSG-DIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGV  126 (286)
T ss_dssp             GGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTT-EEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEE
T ss_pred             CCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCC-eEEEEcCCCCCEEEEECCCCcEEEEecCccCCCceEE
Confidence            36789999976 555555532       246889999 4666 5555541           12222  21 233467889


Q ss_pred             EEeeC-CeEEEecCCCcEEEEecCCCcceeeec--CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCC
Q 038439           60 KFLSN-DELASASTDSTLRLWDVKENLPVRTFR--GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSS  136 (179)
Q Consensus        60 ~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~  136 (179)
                      ++.|+ ..+++...++.|.+||.. ++.+..+.  .+...+..++++|+|+++++...++.|++||.. ++.+..+....
T Consensus       127 ~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g  204 (286)
T 1q7f_A          127 TVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEG  204 (286)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTT
T ss_pred             EEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCC
Confidence            99999 777777778999999964 55555553  334568899999999988888889999999974 44333332211


Q ss_pred             CCCCCCcccCCcceEEEEEEccCCCeEEEEeCCC-cEEEEee
Q 038439          137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG-TIKVLVL  177 (179)
Q Consensus       137 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~iwd~  177 (179)
                      .          ...+..++++++|+++++...++ .|.+||.
T Consensus       205 ~----------~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~  236 (286)
T 1q7f_A          205 I----------TNYPIGVGINSNGEILIADNHNNFNLTIFTQ  236 (286)
T ss_dssp             T----------SCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred             c----------cCCCcEEEECCCCCEEEEeCCCCEEEEEECC
Confidence            0          24678999999999888887776 9999985

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.54  E-value=3.1e-12  Score=88.60  Aligned_cols=167  Identities=10%  Similarity=0.031  Sum_probs=112.7

Q ss_pred             CCccEEEEEcCCce-eEEeec----------CCCceeEEEEcC-CCCeEEEEeC-----------CCcee--ee------
Q 038439            2 AYGKVKVWCTRQEA-SVLNID----------MKANICCVKYNP-GSSNYIAKYQ-----------STAPC--VH------   50 (179)
Q Consensus         2 ~d~~i~vwd~~~~~-~~~~~~----------~~~~v~~~~~~~-~~~~~~~~~~-----------~~~~~--~~------   50 (179)
                      .++.|++||..... .+..+.          +-..+..++++| ++ .++++..           .++.+  +.      
T Consensus       110 ~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g-~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~  188 (329)
T 3fvz_A          110 ALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG-AVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGS  188 (329)
T ss_dssp             TTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC-CEEEEECSSCCEEEEECTTSCEEEEECEECCSS
T ss_pred             CCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC-eEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCC
Confidence            35778888865442 444442          223588999999 66 4544431           12222  11      


Q ss_pred             ----cccCceeEEEEeeC-C-eEEEecCCCcEEEEecCCCcceeeec--CCCCCeEEEEEee------CCCEEEEeccCC
Q 038439           51 ----GHKKAVSYVKFLSN-D-ELASASTDSTLRLWDVKENLPVRTFR--GHMNEKNFVGLTV------NSEYIACGSESN  116 (179)
Q Consensus        51 ----~~~~~i~~~~~~~~-~-~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~------~~~~~~~~~~d~  116 (179)
                          ++......++++|+ + ++++...++.|++||..+++.+..+.  .+...+..++++|      +|+.+++...+.
T Consensus       189 ~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~  268 (329)
T 3fvz_A          189 SPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPV  268 (329)
T ss_dssp             SCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCC
T ss_pred             CCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCc
Confidence                12233788999998 4 45566678899999998888887774  3455688899999      333333334456


Q ss_pred             cEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          117 EVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       117 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .|++||+.+++.+..+....         .+...+..++++|+|+.+++...++.|++|++.
T Consensus       269 ~v~~~~~~~g~~~~~~~~~~---------~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          269 QGFVMNFSSGEIIDVFKPVR---------KHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             CEEEEETTTCCEEEEECCSS---------SCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred             EEEEEEcCCCeEEEEEcCCC---------CccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence            89999999988776643211         014568999999999888888889999999974

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.52  E-value=3.3e-12  Score=88.51  Aligned_cols=161  Identities=7%  Similarity=-0.042  Sum_probs=115.7

Q ss_pred             CCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-----------CCCcee--eeccc-----CceeEEEEee
Q 038439            2 AYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHK-----KAVSYVKFLS   63 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~-----~~i~~~~~~~   63 (179)
                      .++.|.+||..+++.+.++.....+..++++|++ .++++.           .+.+..  +....     .....+++ .
T Consensus        62 ~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~  139 (328)
T 3dsm_A           62 NSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y  139 (328)
T ss_dssp             GGTEEEEEETTTCCEEEEEECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E
T ss_pred             CCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E
Confidence            3578999999999998888777889999999998 555554           222222  21111     13445666 4


Q ss_pred             CCeEEEec--CCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccC----------CcEEEEEcCCCccccc
Q 038439           64 NDELASAS--TDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSES----------NEVYVYHKEISKPVTW  131 (179)
Q Consensus        64 ~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d----------~~v~vwd~~~~~~~~~  131 (179)
                      ++.++.+.  .++.|.++|+.+++.+..+... .....+.++|+|++++++..+          +.|.++|..+++....
T Consensus       140 ~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~  218 (328)
T 3dsm_A          140 GKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQ  218 (328)
T ss_dssp             TTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEE
T ss_pred             CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEE
Confidence            44544444  4889999999998887777643 345678899999987777654          7899999998876655


Q ss_pred             cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      +....           ...+..++++|+++.|+++..  .|.+||+.
T Consensus       219 ~~~~~-----------g~~p~~la~~~d~~~lyv~~~--~v~~~d~~  252 (328)
T 3dsm_A          219 FKFKL-----------GDWPSEVQLNGTRDTLYWINN--DIWRMPVE  252 (328)
T ss_dssp             EECCT-----------TCCCEEEEECTTSCEEEEESS--SEEEEETT
T ss_pred             EecCC-----------CCCceeEEEecCCCEEEEEcc--EEEEEECC
Confidence            44321           235788999999999988765  88899875

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.52  E-value=1.3e-12  Score=92.09  Aligned_cols=158  Identities=6%  Similarity=-0.027  Sum_probs=108.5

Q ss_pred             EEEcCCceeEEeec-CCCceeE-----EEEcCCCCeEEEEeC-CC------------cee--eecccCceeEEEEeeC-C
Q 038439            8 VWCTRQEASVLNID-MKANICC-----VKYNPGSSNYIAKYQ-ST------------APC--VHGHKKAVSYVKFLSN-D   65 (179)
Q Consensus         8 vwd~~~~~~~~~~~-~~~~v~~-----~~~~~~~~~~~~~~~-~~------------~~~--~~~~~~~i~~~~~~~~-~   65 (179)
                      .+|..++..+..+. +......     .+|+|+|+.++.++. .+            +..  ..++...+..+.|+|+ .
T Consensus        14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~   93 (388)
T 3pe7_A           14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDD   93 (388)
T ss_dssp             EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSS
T ss_pred             EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCC
Confidence            45667777766664 4444555     889999977777662 22            122  2233344446789999 8


Q ss_pred             eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEE--EeeCCCEEEEe----------------------ccCCcEEEE
Q 038439           66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVG--LTVNSEYIACG----------------------SESNEVYVY  121 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~----------------------~~d~~v~vw  121 (179)
                      .|+.++.++.|++||+.+++....+..+...+....  ++|++++++..                      ..+..|.+|
T Consensus        94 ~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  173 (388)
T 3pe7_A           94 ALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV  173 (388)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEE
Confidence            899999999999999999887666655555454443  48899988742                      234679999


Q ss_pred             EcCCCccccccccCCCCCCCCcccCCcceEEEEEEcc-CCCeEEEEeCC------CcEEEEeec
Q 038439          122 HKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKS-DSPTMLTANSQ------GTIKVLVLA  178 (179)
Q Consensus       122 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~iwd~~  178 (179)
                      |+.+++.......             ...+..+.|+| +|+.|+....+      ..|.++|+.
T Consensus       174 d~~~g~~~~l~~~-------------~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~  224 (388)
T 3pe7_A          174 DLKTGESTVILQE-------------NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINED  224 (388)
T ss_dssp             ETTTCCEEEEEEE-------------SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETT
T ss_pred             ECCCCceEEeecC-------------CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCC
Confidence            9998865443322             44688999999 99988877653      267777653

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.52  E-value=1.4e-12  Score=91.82  Aligned_cols=131  Identities=11%  Similarity=0.075  Sum_probs=99.6

Q ss_pred             ceeEEEEcCCCCeEEEEeCC--------------------Cce-eeecccCceeEEEEeeCCeEEEecCCCcEEEEecCC
Q 038439           25 NICCVKYNPGSSNYIAKYQS--------------------TAP-CVHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKE   83 (179)
Q Consensus        25 ~v~~~~~~~~~~~~~~~~~~--------------------~~~-~~~~~~~~i~~~~~~~~~~l~~~~~d~~v~iwd~~~   83 (179)
                      ++..+++++....+++++..                    .++ ....+.. |+.++| ....|+++ .++.|++||+++
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f-d~~~L~v~-~~~~l~v~dv~s  115 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF-HGDQVLVS-TRNALYSLDLEE  115 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE-ETTEEEEE-ESSEEEEEESSS
T ss_pred             cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE-CCCEEEEE-cCCcEEEEEchh
Confidence            58999999998666666611                    122 2333556 999999 33888887 889999999987


Q ss_pred             CcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeE
Q 038439           84 NLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTM  163 (179)
Q Consensus        84 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  163 (179)
                      .........+...+..+.+.+.  .++++..||.|.+||+.++....   .             ...|.+++|+|+|  +
T Consensus       116 l~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~---~-------------~~~Vs~v~WSpkG--~  175 (388)
T 1xip_A          116 LSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ---L-------------AQNVTSFDVTNSQ--L  175 (388)
T ss_dssp             TTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE---E-------------EESEEEEEECSSE--E
T ss_pred             hhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc---c-------------cCCceEEEEcCCc--e
Confidence            6655556566677777766543  38888999999999999876542   2             5579999999999  7


Q ss_pred             EEEeCCCcEEEEeec
Q 038439          164 LTANSQGTIKVLVLA  178 (179)
Q Consensus       164 ~~~~~dg~i~iwd~~  178 (179)
                      +.|..||.+++|+..
T Consensus       176 ~vg~~dg~i~~~~~~  190 (388)
T 1xip_A          176 AVLLKDRSFQSFAWR  190 (388)
T ss_dssp             EEEETTSCEEEEEEE
T ss_pred             EEEEcCCcEEEEcCC
Confidence            889999999999764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.48  E-value=2.6e-12  Score=90.56  Aligned_cols=170  Identities=9%  Similarity=0.031  Sum_probs=104.2

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcC-CCCeEEEEeCCC-----cee------------eecc--cCceeEEEEe
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNP-GSSNYIAKYQST-----APC------------VHGH--KKAVSYVKFL   62 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~-----~~~------------~~~~--~~~i~~~~~~   62 (179)
                      +..|.+||+.+++......+...+..+.|+| ++..++.+....     ..+            +..+  ...+..+.|+
T Consensus       167 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~s  246 (396)
T 3c5m_A          167 TCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWI  246 (396)
T ss_dssp             CEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEEC
T ss_pred             cceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEEC
Confidence            4689999999888766666777899999999 775565554211     111            1111  2246778999


Q ss_pred             eC-CeEEEecCC-----CcEEEEecCCCcceeeecCCCCCeEEEEEee-CCCEEEEec----------------cCCcEE
Q 038439           63 SN-DELASASTD-----STLRLWDVKENLPVRTFRGHMNEKNFVGLTV-NSEYIACGS----------------ESNEVY  119 (179)
Q Consensus        63 ~~-~~l~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~----------------~d~~v~  119 (179)
                      |+ ..|+.++.+     +.|.+||+.+++...... .. ... +.|+| +|++++.++                .+..|+
T Consensus       247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~  323 (396)
T 3c5m_A          247 PDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLY  323 (396)
T ss_dssp             TTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEE
T ss_pred             CCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEE
Confidence            99 766666443     349999998876443222 12 233 88999 999887654                347899


Q ss_pred             EEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEee
Q 038439          120 VYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVL  177 (179)
Q Consensus       120 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~  177 (179)
                      +||+.+++.......... ........ ...+..++|+|+|+.|+.++. ++...+|.+
T Consensus       324 ~~d~~~~~~~~l~~~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~  380 (396)
T 3c5m_A          324 VLNTKAKSAQKLCKHSTS-WDVLDGDR-QITHPHPSFTPNDDGVLFTSDFEGVPAIYIA  380 (396)
T ss_dssp             EEETTTTBCCEEEECCCC-CCCBTTBS-STTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             EEecccCceEEccCCCCc-cccccccc-cCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence            999988764322111100 00000000 002455789999998877665 555556543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.47  E-value=4.2e-12  Score=88.20  Aligned_cols=150  Identities=11%  Similarity=0.043  Sum_probs=96.5

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeC---------------CCcee-eecccCceeEEEEeeC-C
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQ---------------STAPC-VHGHKKAVSYVKFLSN-D   65 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---------------~~~~~-~~~~~~~i~~~~~~~~-~   65 (179)
                      ++.|.+||+.+++... +   ..+..++|+|+|+.++.+..               .++.. +..+.. +..+.|+|+ .
T Consensus        42 ~~~l~~~d~~~~~~~~-l---~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~  116 (347)
T 2gop_A           42 ENTIVIENLKNNARRF-I---ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSR  116 (347)
T ss_dssp             EEEEEEEETTTCCEEE-E---ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSS
T ss_pred             cceEEEEeCCCCceEE-c---ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCC
Confidence            5678899988876533 3   56889999999977766541               11111 222233 789999999 7


Q ss_pred             eEEEecCC---------------------------CcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCC--
Q 038439           66 ELASASTD---------------------------STLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESN--  116 (179)
Q Consensus        66 ~l~~~~~d---------------------------~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~--  116 (179)
                      .|+.++.+                           ..|.+||+.+++.+..+.. . .+..+.|+|+| +++++..+.  
T Consensus       117 ~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~  193 (347)
T 2gop_A          117 KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREII  193 (347)
T ss_dssp             EEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSS
T ss_pred             EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEeccccc
Confidence            77776532                           5688999988876455544 3 67889999999 777765442  


Q ss_pred             -----cEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCC--------CcEEEEe
Q 038439          117 -----EVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQ--------GTIKVLV  176 (179)
Q Consensus       117 -----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~iwd  176 (179)
                           ...+|.+.+++.. .+..             ...+..  ++|+|++|+.++.+        ..|.+||
T Consensus       194 ~~~~~~~~l~~~d~~~~~-~l~~-------------~~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d  250 (347)
T 2gop_A          194 PQYFKFWDIYIWEDGKEE-KMFE-------------KVSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD  250 (347)
T ss_dssp             CCSSCCEEEEEEETTEEE-EEEE-------------EESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred             ccccccccEEEeCCCceE-Eecc-------------Ccceee--ECCCCCEEEEEEccccCCccccceEEEEC
Confidence                 3445544444322 2211             112333  38999998877754        3577765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.47  E-value=4.9e-11  Score=88.23  Aligned_cols=166  Identities=7%  Similarity=-0.015  Sum_probs=119.4

Q ss_pred             CCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCCC------------cee--eecccCceeEEEEe----e
Q 038439            2 AYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQST------------APC--VHGHKKAVSYVKFL----S   63 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~------------~~~--~~~~~~~i~~~~~~----~   63 (179)
                      .+++|.++|..+++.+..+.....+..+.|+|+|+.+++++..+            +.+  +... .....++|+    |
T Consensus       175 ~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~p  253 (567)
T 1qks_A          175 DAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGW  253 (567)
T ss_dssp             TTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTC
T ss_pred             CCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCC
Confidence            57899999999999999998887888999999998777766322            222  2211 234678999    6


Q ss_pred             C-CeEEEec-CCCcEEEEecCCCcceeeecCC-----------CCCeEEEEEeeCCCE-EEEeccCCcEEEEEcCCCccc
Q 038439           64 N-DELASAS-TDSTLRLWDVKENLPVRTFRGH-----------MNEKNFVGLTVNSEY-IACGSESNEVYVYHKEISKPV  129 (179)
Q Consensus        64 ~-~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~-~~~~~~d~~v~vwd~~~~~~~  129 (179)
                      + +++++++ .++.|.++|..+.+.+..+...           ...+..+..++++.. ++....+|.|.++|....+..
T Consensus       254 DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~  333 (567)
T 1qks_A          254 EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL  333 (567)
T ss_dssp             TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE
T ss_pred             CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccc
Confidence            8 6666655 4689999999998887766421           125677888887554 555567799999998875433


Q ss_pred             cccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEe-CCCcEEEEeecC
Q 038439          130 TWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN-SQGTIKVLVLAA  179 (179)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~  179 (179)
                      .......           ......+.|+|++++++++. .++.|.++|+.+
T Consensus       334 ~v~~i~~-----------~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t  373 (567)
T 1qks_A          334 KTTEISA-----------ERFLHDGGLDGSHRYFITAANARNKLVVIDTKE  373 (567)
T ss_dssp             EEEEEEC-----------CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             eeeeeec-----------cccccCceECCCCCEEEEEeCCCCeEEEEECCC
Confidence            3222211           33567889999999987765 578999999764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.46  E-value=4.7e-11  Score=82.53  Aligned_cols=160  Identities=6%  Similarity=0.030  Sum_probs=104.5

Q ss_pred             CCccEEEEEcCCceeEEee-cCCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-Ce
Q 038439            2 AYGKVKVWCTRQEASVLNI-DMKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-DE   66 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~~   66 (179)
                      .++.++.|   .++....+ .+...+.+++|+|++. +++++           ..++..  ...+...+.+++++|+ .+
T Consensus        25 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l  100 (333)
T 2dg1_A           25 SESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRL  100 (333)
T ss_dssp             CGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCE
T ss_pred             ecccCccc---ccceeEEEeccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcE
Confidence            45677777   23344444 3556789999999995 55544           122222  2245567899999999 66


Q ss_pred             EEEecCC----CcEEEEecCCCcceeeec--CCCCCeEEEEEeeCCCEEEEecc------CCcEEEEEcCCCcccccccc
Q 038439           67 LASASTD----STLRLWDVKENLPVRTFR--GHMNEKNFVGLTVNSEYIACGSE------SNEVYVYHKEISKPVTWHRF  134 (179)
Q Consensus        67 l~~~~~d----~~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~------d~~v~vwd~~~~~~~~~~~~  134 (179)
                      +++...+    +.|.+||..+++....+.  .....+..++++|+|+++++...      .+.|..+|..+++.......
T Consensus       101 ~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  180 (333)
T 2dg1_A          101 FVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN  180 (333)
T ss_dssp             EEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE
T ss_pred             EEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC
Confidence            6666655    689999988776543332  23456889999999988776653      34566666654443221111


Q ss_pred             CCCCCCCCcccCCcceEEEEEEccCCCeEEE-EeCCCcEEEEeec
Q 038439          135 SSPDMDDTDEDAGSYFISAVCWKSDSPTMLT-ANSQGTIKVLVLA  178 (179)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~iwd~~  178 (179)
                                   ...+..++|+|+++.|+. .+.++.|.+||++
T Consensus       181 -------------~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~  212 (333)
T 2dg1_A          181 -------------ISVANGIALSTDEKVLWVTETTANRLHRIALE  212 (333)
T ss_dssp             -------------ESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             -------------CCcccceEECCCCCEEEEEeCCCCeEEEEEec
Confidence                         234788999999986654 4557899999974

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.45  E-value=4.5e-11  Score=80.15  Aligned_cols=162  Identities=8%  Similarity=-0.014  Sum_probs=110.1

Q ss_pred             CccEEEEEcCCceeEEeec--CCCceeEEEEcCCCCeEEEEe-CC--------Cc--ee--eecccCceeEEEEeeC-Ce
Q 038439            3 YGKVKVWCTRQEASVLNID--MKANICCVKYNPGSSNYIAKY-QS--------TA--PC--VHGHKKAVSYVKFLSN-DE   66 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~-~~--------~~--~~--~~~~~~~i~~~~~~~~-~~   66 (179)
                      ++.|.+||..+.... .+.  ....+..+++.|++. ++++. ..        +.  ..  .......+..+++.++ ..
T Consensus        86 ~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l  163 (270)
T 1rwi_B           86 NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNV  163 (270)
T ss_dssp             TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCE
T ss_pred             CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCE
Confidence            467788886654432 232  235789999999985 55443 11        11  11  1122235678999998 76


Q ss_pred             EEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccC
Q 038439           67 LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDA  146 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  146 (179)
                      +++...++.|.+||................+..++++++|..+++...++.|.+||........ ....           
T Consensus       164 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~~-----------  231 (270)
T 1rwi_B          164 YVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPFT-----------  231 (270)
T ss_dssp             EEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCCC-----------
T ss_pred             EEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-eccC-----------
Confidence            6676678899999988665443333333668899999999877777778899999987644322 1110           


Q ss_pred             CcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          147 GSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       147 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      +...+..++++++|+.+++...++.|+++++.
T Consensus       232 ~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~  263 (270)
T 1rwi_B          232 GLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  263 (270)
T ss_dssp             SCSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             CCCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence            02468899999999988888889999999874

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.45  E-value=3e-11  Score=83.68  Aligned_cols=162  Identities=6%  Similarity=-0.071  Sum_probs=108.8

Q ss_pred             CCccEEEEEcCCceeEEeecCCC------ceeEEEEcCCCCeEEEEeC------------CCcee--eecccCceeEEEE
Q 038439            2 AYGKVKVWCTRQEASVLNIDMKA------NICCVKYNPGSSNYIAKYQ------------STAPC--VHGHKKAVSYVKF   61 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~~~~~------------~~~~~--~~~~~~~i~~~~~   61 (179)
                      .++.|.+||..+++....+....      ....+++ .++ .++++..            +++.+  +.. ......+.+
T Consensus       103 ~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~-~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~  179 (328)
T 3dsm_A          103 WDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGK-YVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVM  179 (328)
T ss_dssp             SCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETT-EEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEE
T ss_pred             CCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECC-EEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEE
Confidence            47899999999999887776554      6777888 344 6666541            11222  111 123456788


Q ss_pred             eeC-CeEEEecCC----------CcEEEEecCCCcceeeecCC-CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccc
Q 038439           62 LSN-DELASASTD----------STLRLWDVKENLPVRTFRGH-MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPV  129 (179)
Q Consensus        62 ~~~-~~l~~~~~d----------~~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~  129 (179)
                      +|+ .+++++..+          +.|.++|..+++....+... ......++++|+++.++++..  .|.+||..+++..
T Consensus       180 ~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~  257 (328)
T 3dsm_A          180 DKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP  257 (328)
T ss_dssp             CTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC
T ss_pred             cCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCcee
Confidence            888 555555544          78999999988877666532 236789999999998887765  8999999887753


Q ss_pred             cccccCCCCCCCCcccCCcceEEEEEEccC-CCeEEEE----eCCCcEEEEeec
Q 038439          130 TWHRFSSPDMDDTDEDAGSYFISAVCWKSD-SPTMLTA----NSQGTIKVLVLA  178 (179)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~----~~dg~i~iwd~~  178 (179)
                      .......          +......++++|+ ++.+++.    ..++.|.+||..
T Consensus       258 ~~~~~~~----------~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          258 VRPFLEF----------RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             SSCSBCC----------CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             eeeeecC----------CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence            2111110          0346788999995 5545554    568899999863

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.43  E-value=1.5e-12  Score=91.78  Aligned_cols=163  Identities=7%  Similarity=-0.055  Sum_probs=99.1

Q ss_pred             ccEEEEEcCCceeEEeecCCCcee-EEEEcCCCCeEEEEeCCCcee------------eecccCceeE------------
Q 038439            4 GKVKVWCTRQEASVLNIDMKANIC-CVKYNPGSSNYIAKYQSTAPC------------VHGHKKAVSY------------   58 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~~------------   58 (179)
                      ..|.+||+.+++............ .+.|+|+|+.++.+.......            ...+......            
T Consensus        60 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  139 (396)
T 3c5m_A           60 RNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKL  139 (396)
T ss_dssp             CEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEE
T ss_pred             ceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcc
Confidence            468888988887655544444433 488999997776665222111            1112111111            


Q ss_pred             -------EEEeeC-CeEEEe-----cCCCcEEEEecCCCcceeeecCCCCCeEEEEEee-CCCEEEEeccC------CcE
Q 038439           59 -------VKFLSN-DELASA-----STDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTV-NSEYIACGSES------NEV  118 (179)
Q Consensus        59 -------~~~~~~-~~l~~~-----~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d------~~v  118 (179)
                             +.|+|+ ..++..     ..+..|.+||+.+++..... .+...+..+.|+| ++..|+..+.+      ..|
T Consensus       140 ~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l  218 (396)
T 3c5m_A          140 VGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARM  218 (396)
T ss_dssp             EEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCC
T ss_pred             ccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceE
Confidence                   123344 333222     34568999999887654444 4566788999999 78876655433      468


Q ss_pred             EEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCC-----CcEEEEeec
Q 038439          119 YVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQ-----GTIKVLVLA  178 (179)
Q Consensus       119 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~  178 (179)
                      .+||+..++...... ...          ...+..+.|+|+|++|+.++.+     +.|++||+.
T Consensus       219 ~~~d~~~~~~~~l~~-~~~----------~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~  272 (396)
T 3c5m_A          219 WLVNEDGSNVRKIKE-HAE----------GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPE  272 (396)
T ss_dssp             EEEETTSCCCEESSC-CCT----------TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTT
T ss_pred             EEEECCCCceeEeec-cCC----------CccccceEECCCCCEEEEEecCCCCccceEEEEECC
Confidence            888887654332211 100          3357889999999988776553     449999875

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.38  E-value=1.2e-10  Score=79.29  Aligned_cols=157  Identities=11%  Similarity=0.024  Sum_probs=104.9

Q ss_pred             CccEEEEEcCCceeEEeec-----CCCceeEEEEcCCCCeEEEE----e----------------------C-CCcee-e
Q 038439            3 YGKVKVWCTRQEASVLNID-----MKANICCVKYNPGSSNYIAK----Y----------------------Q-STAPC-V   49 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~----~----------------------~-~~~~~-~   49 (179)
                      ++.|.+||..+++......     ....+..++++|+|. ++++    |                      . .++.. +
T Consensus        89 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~  167 (296)
T 3e5z_A           89 LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAP  167 (296)
T ss_dssp             TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEE
T ss_pred             CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCCCCEEEe
Confidence            4678999987776543332     123467899999995 4443    1                      1 11111 3


Q ss_pred             ecccCceeEEEEeeC-CeEEEecCCCcEEEEecC-CCcc---eeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcC
Q 038439           50 HGHKKAVSYVKFLSN-DELASASTDSTLRLWDVK-ENLP---VRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKE  124 (179)
Q Consensus        50 ~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~-~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~  124 (179)
                      ..+......++|+|+ ..+++.+.++.|.+||+. +++.   ...+..+...+..++++++|+++++.  ++.|.+||..
T Consensus       168 ~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~  245 (296)
T 3e5z_A          168 IRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD  245 (296)
T ss_dssp             ECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred             ecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence            344455688999999 777777788999999987 4443   23333344556789999999876665  7889999987


Q ss_pred             CCccccccccCCCCCCCCcccCCcceEEEEEE-ccCCCeEEEEeCCCcEEEEee
Q 038439          125 ISKPVTWHRFSSPDMDDTDEDAGSYFISAVCW-KSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~i~iwd~  177 (179)
                       ++.+..+...            .. +.+++| .|+++.|++++.++ +.-+++
T Consensus       246 -g~~~~~~~~~------------~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~  284 (296)
T 3e5z_A          246 -GDELGRVLTP------------QT-TSNLCFGGPEGRTLYMTVSTE-FWSIET  284 (296)
T ss_dssp             -SCEEEEEECS------------SC-CCEEEEESTTSCEEEEEETTE-EEEEEC
T ss_pred             -CCEEEEEECC------------CC-ceeEEEECCCCCEEEEEcCCe-EEEEEc
Confidence             5555444431            33 788899 58999999988774 433343

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.35  E-value=3.3e-10  Score=75.93  Aligned_cols=164  Identities=7%  Similarity=-0.009  Sum_probs=104.7

Q ss_pred             CCccEEEEEcCCceeEEe-ecCCCceeEEEEcCCCCeEEEEeCCCc---------ee--ee-cccCceeEEEEeeC-CeE
Q 038439            2 AYGKVKVWCTRQEASVLN-IDMKANICCVKYNPGSSNYIAKYQSTA---------PC--VH-GHKKAVSYVKFLSN-DEL   67 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~---------~~--~~-~~~~~i~~~~~~~~-~~l   67 (179)
                      .++.|.+||..+...... ......+.++++.+++. ++++...+.         ..  +. .....+..+++.++ ..+
T Consensus        44 ~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~  122 (270)
T 1rwi_B           44 MYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVY  122 (270)
T ss_dssp             SSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEE
T ss_pred             CCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEE
Confidence            356777777654432221 12335688999999986 444432111         11  11 22246788999988 766


Q ss_pred             EEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCC
Q 038439           68 ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAG  147 (179)
Q Consensus        68 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  147 (179)
                      ++...++.|.+|+..+.............+..++++++|+++++...++.|.+||............  .          
T Consensus       123 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~--~----------  190 (270)
T 1rwi_B          123 VADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT--D----------  190 (270)
T ss_dssp             EEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCS--S----------
T ss_pred             EEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeeccc--C----------
Confidence            6667788999998665443322222334577899999999777777788999999876554322110  0          


Q ss_pred             cceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          148 SYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       148 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ...+..+++.++|..+++...++.|.+||..
T Consensus       191 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~  221 (270)
T 1rwi_B          191 ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG  221 (270)
T ss_dssp             CCSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred             CCCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence            2457889999999777777778899999864

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.35  E-value=2.7e-10  Score=77.56  Aligned_cols=160  Identities=8%  Similarity=-0.034  Sum_probs=102.3

Q ss_pred             CCccEEEEEcCCceeEEee-cCCCceeEEEEcCCCCeEEEEeC-----------CCcee-ee-c----ccCceeEEEEee
Q 038439            2 AYGKVKVWCTRQEASVLNI-DMKANICCVKYNPGSSNYIAKYQ-----------STAPC-VH-G----HKKAVSYVKFLS   63 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~-----------~~~~~-~~-~----~~~~i~~~~~~~   63 (179)
                      .++.|..||..++  ...+ .....+.+++++|+|. ++++..           +++.. +. .    ....+..+++.|
T Consensus        48 ~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~  124 (296)
T 3e5z_A           48 RQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAP  124 (296)
T ss_dssp             GGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCC-EEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECT
T ss_pred             CCCEEEEEECCCC--eEEEECCCCCcceeeECCCCc-EEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECC
Confidence            3578899998877  3444 3566799999999995 444431           22222 11 1    112356788999


Q ss_pred             C-CeEEE----ecC-------------CCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcC-
Q 038439           64 N-DELAS----AST-------------DSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKE-  124 (179)
Q Consensus        64 ~-~~l~~----~~~-------------d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~-  124 (179)
                      + .++++    ++.             .+.|..++.. ++ +..+..+......++|+|+++.+++.+.++.|.+||+. 
T Consensus       125 ~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~  202 (296)
T 3e5z_A          125 DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNA  202 (296)
T ss_dssp             TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECS
T ss_pred             CCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECC
Confidence            9 66666    331             2355555544 33 44444556667899999999988777788999999997 


Q ss_pred             CCcc-ccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          125 ISKP-VTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       125 ~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      +++. .....+...          ...+..++++++|+++++.  ++.|.+||.+
T Consensus       203 ~g~~~~~~~~~~~~----------~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~  245 (296)
T 3e5z_A          203 RGETEYQGVHFTVE----------PGKTDGLRVDAGGLIWASA--GDGVHVLTPD  245 (296)
T ss_dssp             SSCEEEEEEEECCS----------SSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred             CCcCcCCCeEeeCC----------CCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence            4443 111111100          3345678999999866555  7889999853

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.34  E-value=1.8e-10  Score=87.49  Aligned_cols=141  Identities=4%  Similarity=-0.097  Sum_probs=91.0

Q ss_pred             ceeEEEEcCCCCeEEEEe-C--------------CCcee-eecccCceeEEEEeeC-CeEEEecCCCc------------
Q 038439           25 NICCVKYNPGSSNYIAKY-Q--------------STAPC-VHGHKKAVSYVKFLSN-DELASASTDST------------   75 (179)
Q Consensus        25 ~v~~~~~~~~~~~~~~~~-~--------------~~~~~-~~~~~~~i~~~~~~~~-~~l~~~~~d~~------------   75 (179)
                      .+..++|||||+.++.+. .              +++.+ .......+..++|+|| ..|+.++.++.            
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~  205 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccC
Confidence            588999999997665554 1              12222 1111122567899999 88888877765            


Q ss_pred             ----EEEEecCCCcce--eeecC--CCCCeEEEEEeeCCCEEEEecc-----CCcEEEEEcCC------Cc-cccccccC
Q 038439           76 ----LRLWDVKENLPV--RTFRG--HMNEKNFVGLTVNSEYIACGSE-----SNEVYVYHKEI------SK-PVTWHRFS  135 (179)
Q Consensus        76 ----v~iwd~~~~~~~--~~~~~--~~~~v~~~~~~~~~~~~~~~~~-----d~~v~vwd~~~------~~-~~~~~~~~  135 (179)
                          |++|++.+++..  ..+..  +...+..+.|+|||++|+..+.     +..|++||+.+      +. ....+...
T Consensus       206 ~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~  285 (710)
T 2xdw_A          206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN  285 (710)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS
T ss_pred             CCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCC
Confidence                999999876532  22232  3455778999999999887654     56899999986      42 22222211


Q ss_pred             CCCCCCCcccCCcceEEEEEEccCCCeEEEEeCC----CcEEEEeec
Q 038439          136 SPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQ----GTIKVLVLA  178 (179)
Q Consensus       136 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd~~  178 (179)
                                  ...+.. .|+|+|+.|+..+..    +.|.+||+.
T Consensus       286 ------------~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~  319 (710)
T 2xdw_A          286 ------------FEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFT  319 (710)
T ss_dssp             ------------SSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETT
T ss_pred             ------------CCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCC
Confidence                        122222 478889888776653    358888874

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.33  E-value=4.1e-10  Score=85.52  Aligned_cols=162  Identities=6%  Similarity=-0.040  Sum_probs=105.5

Q ss_pred             cEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCCCc---------------ee---------------eec--c
Q 038439            5 KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTA---------------PC---------------VHG--H   52 (179)
Q Consensus         5 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---------------~~---------------~~~--~   52 (179)
                      .|++||+.+++.+........+..++|+|||+.++.+.....               .+               +..  |
T Consensus       152 ~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~  231 (710)
T 2xdw_A          152 TIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDE  231 (710)
T ss_dssp             EEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTC
T ss_pred             EEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCC
Confidence            899999999987664333333778999999987777652111               01               111  2


Q ss_pred             cCceeEEEEeeC-CeEEEecC-----CCcEEEEecCC------Cc-ceeeecCCCCCeEEEEEeeCCCEEEEeccC----
Q 038439           53 KKAVSYVKFLSN-DELASAST-----DSTLRLWDVKE------NL-PVRTFRGHMNEKNFVGLTVNSEYIACGSES----  115 (179)
Q Consensus        53 ~~~i~~~~~~~~-~~l~~~~~-----d~~v~iwd~~~------~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d----  115 (179)
                      ...+..+.|+|+ ++|+..+.     +..|.+||+.+      +. ....+..+...+.. .|+|+|..|+..+..    
T Consensus       232 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~  310 (710)
T 2xdw_A          232 PKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPN  310 (710)
T ss_dssp             TTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTT
T ss_pred             CeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCC
Confidence            334668899999 77776654     56899999976      43 35555555555544 588998887665442    


Q ss_pred             CcEEEEEcCCCcc--ccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcE--EEEee
Q 038439          116 NEVYVYHKEISKP--VTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTI--KVLVL  177 (179)
Q Consensus       116 ~~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i--~iwd~  177 (179)
                      +.|.+||+.+++.  ...+..  +        .....+..+.|++++.++++...++..  .+|++
T Consensus       311 ~~l~~~d~~~~~~~~~~~l~~--~--------~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~  366 (710)
T 2xdw_A          311 YRLINIDFTDPEESKWKVLVP--E--------HEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDL  366 (710)
T ss_dssp             CEEEEEETTSCCGGGCEEEEC--C--------CSSCEEEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred             CEEEEEeCCCCCcccceeccC--C--------CCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEEC
Confidence            3699999987642  122111  1        002367889998777888888888854  45554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.32  E-value=1.8e-10  Score=87.29  Aligned_cols=140  Identities=8%  Similarity=-0.080  Sum_probs=88.4

Q ss_pred             CceeEEEEcCCCCeEEEEe-CCC---cee----------e-ecccCce--eEEEEeeC-CeEEEecCCCc----------
Q 038439           24 ANICCVKYNPGSSNYIAKY-QST---APC----------V-HGHKKAV--SYVKFLSN-DELASASTDST----------   75 (179)
Q Consensus        24 ~~v~~~~~~~~~~~~~~~~-~~~---~~~----------~-~~~~~~i--~~~~~~~~-~~l~~~~~d~~----------   75 (179)
                      ..+.+++|||||+.++.+. ..+   ..+          . ..+...+  ..++|+|+ ..|+.++.+..          
T Consensus       121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~  200 (695)
T 2bkl_A          121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPG  200 (695)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGG
T ss_pred             EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCC
Confidence            3689999999996665443 111   111          1 1122223  67899999 88888888766          


Q ss_pred             ---EEEEecCCCcc----eeeecCCCCCeEEEEEeeCCCEEEEeccCC----cEEEEEcCCCccccccccCCCCCCCCcc
Q 038439           76 ---LRLWDVKENLP----VRTFRGHMNEKNFVGLTVNSEYIACGSESN----EVYVYHKEISKPVTWHRFSSPDMDDTDE  144 (179)
Q Consensus        76 ---v~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~----~v~vwd~~~~~~~~~~~~~~~~~~~~~~  144 (179)
                         |++|++.++..    +.....+...+..+.|+|||++|+..+.++    .|.++|..+++.......          
T Consensus       201 ~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~----------  270 (695)
T 2bkl_A          201 YTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKG----------  270 (695)
T ss_dssp             GCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEEC----------
T ss_pred             CCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecC----------
Confidence               99999987652    222233445788999999999988777655    677776655543322211          


Q ss_pred             cCCcceEEEEEEccCCCeEEEEeC----CCcEEEEeec
Q 038439          145 DAGSYFISAVCWKSDSPTMLTANS----QGTIKVLVLA  178 (179)
Q Consensus       145 ~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~iwd~~  178 (179)
                         ...+....+ +++. ++..+.    ++.|.+||++
T Consensus       271 ---~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~  303 (695)
T 2bkl_A          271 ---VGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPA  303 (695)
T ss_dssp             ---SSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTT
T ss_pred             ---CCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCC
Confidence               223344455 5666 544443    5789999874

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.32  E-value=1.9e-09  Score=76.00  Aligned_cols=162  Identities=9%  Similarity=0.026  Sum_probs=105.6

Q ss_pred             CccEEEEEcCCceeEEeecCC--------CceeEEEEcCCCCeEEEEeCC-Ccee--eecccCcee--------EEEEee
Q 038439            3 YGKVKVWCTRQEASVLNIDMK--------ANICCVKYNPGSSNYIAKYQS-TAPC--VHGHKKAVS--------YVKFLS   63 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~i~--------~~~~~~   63 (179)
                      ++.|.+||..+.+.+..+...        .....++|+|+|+.++++... ...+  +. .+..+.        ++.+.|
T Consensus        96 ~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~  174 (373)
T 2mad_H           96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHP  174 (373)
T ss_pred             CCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEe
Confidence            578999999998888777532        345689999999877777532 2333  54 433321        122334


Q ss_pred             C--CeEEEecCCCcEEEEecCCCcceee--------------------------------------------------ec
Q 038439           64 N--DELASASTDSTLRLWDVKENLPVRT--------------------------------------------------FR   91 (179)
Q Consensus        64 ~--~~l~~~~~d~~v~iwd~~~~~~~~~--------------------------------------------------~~   91 (179)
                      +  ..+++.+.|+.+.++|. +++....                                                  +.
T Consensus       175 ~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~  253 (373)
T 2mad_H          175 GAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPID  253 (373)
T ss_pred             CCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeee
Confidence            4  34555566676666666 4332210                                                  00


Q ss_pred             C----------CCCCeEEEEEeeCCCEEEEecc----------CCcEEEEEcCCCccccccccCCCCCCCCcccCCcceE
Q 038439           92 G----------HMNEKNFVGLTVNSEYIACGSE----------SNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFI  151 (179)
Q Consensus        92 ~----------~~~~v~~~~~~~~~~~~~~~~~----------d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  151 (179)
                      .          .......+.++|+++.+++...          .+.|.++|+.+.+.+..+..             ....
T Consensus       254 ~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-------------g~~p  320 (373)
T 2mad_H          254 ALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-------------GHDV  320 (373)
T ss_pred             ecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-------------CCCc
Confidence            0          0011223678888887776543          35799999999988877765             4457


Q ss_pred             EEEEEccCCC-eEEEEe-CCCcEEEEeecC
Q 038439          152 SAVCWKSDSP-TMLTAN-SQGTIKVLVLAA  179 (179)
Q Consensus       152 ~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~  179 (179)
                      ..+.|+|||+ .++++. .++.|.++|+++
T Consensus       321 ~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t  350 (373)
T 2mad_H          321 DAISVAQDGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             CeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence            8999999999 777777 489999999864

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.31  E-value=1.1e-10  Score=81.99  Aligned_cols=87  Identities=11%  Similarity=0.023  Sum_probs=70.9

Q ss_pred             EEEeeC-CeEEEecC-----------CCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCC
Q 038439           59 VKFLSN-DELASAST-----------DSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEIS  126 (179)
Q Consensus        59 ~~~~~~-~~l~~~~~-----------d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~  126 (179)
                      ++++|+ +.++.+..           ...|.+||+.+++.+..+..+.  +..++|+|+|+++++++. +.|.+||..++
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence            688998 66655432           3489999999999999888766  899999999999998887 99999999999


Q ss_pred             --cccccc-ccCCCCCCCCcccCCcceEEEEEEccCCC
Q 038439          127 --KPVTWH-RFSSPDMDDTDEDAGSYFISAVCWKSDSP  161 (179)
Q Consensus       127 --~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  161 (179)
                        +.+..+ ..             ......++++|+|+
T Consensus       336 ~l~~~~~i~~~-------------G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          336 EPKLLRTIEGA-------------AEASLQVQFHPVGG  360 (361)
T ss_dssp             SCEEEEEETTS-------------CSSEEEEEECCCSC
T ss_pred             cceeeEEeccC-------------CCCcEEEEecCCCC
Confidence              776654 22             45678899999986

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.31  E-value=2.3e-09  Score=73.30  Aligned_cols=162  Identities=9%  Similarity=0.025  Sum_probs=105.8

Q ss_pred             ccEEEEEcCCceeEEe-ec-----CCCceeEEEEcCCCCeEEEEeCC---------------Ccee-ee---------cc
Q 038439            4 GKVKVWCTRQEASVLN-ID-----MKANICCVKYNPGSSNYIAKYQS---------------TAPC-VH---------GH   52 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~-~~-----~~~~v~~~~~~~~~~~~~~~~~~---------------~~~~-~~---------~~   52 (179)
                      +.|.+||.. ++.... ..     ....+.++++.|+|..+++....               .... +.         .+
T Consensus        92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~  170 (314)
T 1pjx_A           92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTA  170 (314)
T ss_dssp             TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEE
T ss_pred             CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEeccC
Confidence            357788877 654433 22     12358899999999544444221               1111 21         22


Q ss_pred             cCceeEEEEe----eC-CeE-EEecCCCcEEEEecC-CCc-----ceeeecCCC-CCeEEEEEeeCCCEEEEeccCCcEE
Q 038439           53 KKAVSYVKFL----SN-DEL-ASASTDSTLRLWDVK-ENL-----PVRTFRGHM-NEKNFVGLTVNSEYIACGSESNEVY  119 (179)
Q Consensus        53 ~~~i~~~~~~----~~-~~l-~~~~~d~~v~iwd~~-~~~-----~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~d~~v~  119 (179)
                      ......++++    |+ +.+ ++...++.|.+||+. +++     ....+..+. ..+..++++++|+++++...++.|.
T Consensus       171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~  250 (314)
T 1pjx_A          171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE  250 (314)
T ss_dssp             ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred             CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEE
Confidence            2345678899    88 454 454668899999976 343     222333333 5578899999999888877788999


Q ss_pred             EEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEE-eCCCcEEEEeec
Q 038439          120 VYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTA-NSQGTIKVLVLA  178 (179)
Q Consensus       120 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~  178 (179)
                      +||..+++....+...            ...+.+++++|+++.|+++ ..++.|..|++.
T Consensus       251 ~~d~~~g~~~~~~~~~------------~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          251 VFGPDGGQPKMRIRCP------------FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EECTTCBSCSEEEECS------------SSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EEcCCCCcEeEEEeCC------------CCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence            9999877665444321            3568999999999955554 456889999864

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.29  E-value=2.5e-09  Score=72.35  Aligned_cols=157  Identities=8%  Similarity=0.032  Sum_probs=110.8

Q ss_pred             CCccEEEEEcCCceeEEeecCC--CceeEEEEcCCCCeEEEEeC-CCcee-eec----------------ccCceeEEEE
Q 038439            2 AYGKVKVWCTRQEASVLNIDMK--ANICCVKYNPGSSNYIAKYQ-STAPC-VHG----------------HKKAVSYVKF   61 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~-~~~~~-~~~----------------~~~~i~~~~~   61 (179)
                      .++.|..||. +++.+..+...  ..+.++.+.|+|..+++.+. ..+.+ +..                +......+..
T Consensus        54 ~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~  132 (276)
T 3no2_A           54 YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINK  132 (276)
T ss_dssp             CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEE
T ss_pred             CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceE
Confidence            3567888998 78888888743  57889999999966665442 22222 211                1122334556


Q ss_pred             eeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCC
Q 038439           62 LSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMD  140 (179)
Q Consensus        62 ~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~  140 (179)
                      .++ +++++...++.|..||.. ++.+.++... ..+..+...++|+.++++..++.|..+|..+++.+..+......  
T Consensus       133 ~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~--  208 (276)
T 3no2_A          133 NKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIE--  208 (276)
T ss_dssp             CTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSB--
T ss_pred             CCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCC--
Confidence            677 888899999999999988 8988888754 34567788899999999888889999999999987666422110  


Q ss_pred             CCcccCCcceEEEEEEccCCCeEEEEe
Q 038439          141 DTDEDAGSYFISAVCWKSDSPTMLTAN  167 (179)
Q Consensus       141 ~~~~~~~~~~i~~~~~~~~~~~l~~~~  167 (179)
                          ......+..+...++|+.+++..
T Consensus       209 ----~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          209 ----GVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             ----SCCCSEEEEEEECTTSCEEEEEE
T ss_pred             ----CccccccccceEcCCCCEEEEec
Confidence                00023477788888888877763

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.28  E-value=4.8e-10  Score=77.79  Aligned_cols=149  Identities=6%  Similarity=-0.055  Sum_probs=96.8

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCC--------Ccee--ee--------cccCceeEEEEeeC-
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQS--------TAPC--VH--------GHKKAVSYVKFLSN-   64 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--------~~~~--~~--------~~~~~i~~~~~~~~-   64 (179)
                      ..|.+||+.+++.+..+... .+..++|+|+| .+++....        ...+  +.        .+ ..+..  ++|+ 
T Consensus       152 ~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~--~spdg  226 (347)
T 2gop_A          152 TTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYA--VDSDG  226 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEE--EEECS
T ss_pred             ceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEeccC-cceee--ECCCC
Confidence            57899999888763444333 88899999999 44444321        1122  22        12 22333  3888 


Q ss_pred             CeEEEecCC--------CcEEEEecCCCcceeeecCCCCCeEE-EEEeeCCCEEEEeccCCcEEEEEcCCCccccccccC
Q 038439           65 DELASASTD--------STLRLWDVKENLPVRTFRGHMNEKNF-VGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFS  135 (179)
Q Consensus        65 ~~l~~~~~d--------~~v~iwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~  135 (179)
                      ..++.++.+        ..|.+||  +++.......+...+.. +.|+ ++ ++++++.++.+++| +.+++....... 
T Consensus       227 ~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~-  300 (347)
T 2gop_A          227 ERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKG-  300 (347)
T ss_dssp             SCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECS-
T ss_pred             CEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecC-
Confidence            777766643        3678888  55544444455667776 8999 88 88899999999999 875543222111 


Q ss_pred             CCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcE-EEEee
Q 038439          136 SPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTI-KVLVL  177 (179)
Q Consensus       136 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i-~iwd~  177 (179)
                                  ...+..++|+|  ..+++++.++.. .+|.+
T Consensus       301 ------------~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~  329 (347)
T 2gop_A          301 ------------RHWIMGFDVDE--IVVYLKETATRLRELFTW  329 (347)
T ss_dssp             ------------SSEEEEEEESS--SEEEEEECSSSCCEEEEE
T ss_pred             ------------CCeEEeeeeeC--cEEEEEcCCCChHHheEe
Confidence                        45788999999  677777776654 67754

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.27  E-value=1e-10  Score=80.84  Aligned_cols=143  Identities=10%  Similarity=0.108  Sum_probs=95.8

Q ss_pred             ceeEEEEcCCCCeEEEEe--C-----CCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCC
Q 038439           25 NICCVKYNPGSSNYIAKY--Q-----STAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHM   94 (179)
Q Consensus        25 ~v~~~~~~~~~~~~~~~~--~-----~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~   94 (179)
                      .+.++.|+|++..++...  .     ..+.+  +..+...+.+++|+|+ .+++++..++.|.+||..+++.......+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~   86 (333)
T 2dg1_A            7 DLPTLFYSGKSNSAVPIISESELQTITAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK   86 (333)
T ss_dssp             CCCBCCSCGGGGCSSCCCCGGGSCEEECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS
T ss_pred             ccceeeecCCccceeEEeecccCcccccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCC
Confidence            456677777654333222  0     11222  4556667789999999 766778889999999998876554443456


Q ss_pred             CCeEEEEEeeCCCEEEEeccC----CcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC--
Q 038439           95 NEKNFVGLTVNSEYIACGSES----NEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS--  168 (179)
Q Consensus        95 ~~v~~~~~~~~~~~~~~~~~d----~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--  168 (179)
                      ..+..++++|+|+++++...+    +.|.+||..+++..........          ...+..++++|+|+++++...  
T Consensus        87 ~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~----------~~~~~~i~~d~~g~l~v~~~~~~  156 (333)
T 2dg1_A           87 ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLST----------AYCIDDMVFDSKGGFYFTDFRGY  156 (333)
T ss_dssp             SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSS----------CCCEEEEEECTTSCEEEEECCCB
T ss_pred             CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCcc----------CCcccceEECCCCCEEEEecccc
Confidence            679999999999988877666    6899999987664322211111          456889999999987776553  


Q ss_pred             ----CCcEEEEee
Q 038439          169 ----QGTIKVLVL  177 (179)
Q Consensus       169 ----dg~i~iwd~  177 (179)
                          .+.|..+|.
T Consensus       157 ~~~~~~~l~~~~~  169 (333)
T 2dg1_A          157 STNPLGGVYYVSP  169 (333)
T ss_dssp             TTBCCEEEEEECT
T ss_pred             ccCCCceEEEEeC
Confidence                245555553

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.27  E-value=1.7e-10  Score=81.36  Aligned_cols=147  Identities=12%  Similarity=0.024  Sum_probs=97.2

Q ss_pred             cEEEEEcCCce-----------eEEeecCCCceeEEEEcCCCCeEEEEeCCCce----------e--eecccCceeEEEE
Q 038439            5 KVKVWCTRQEA-----------SVLNIDMKANICCVKYNPGSSNYIAKYQSTAP----------C--VHGHKKAVSYVKF   61 (179)
Q Consensus         5 ~i~vwd~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----------~--~~~~~~~i~~~~~   61 (179)
                      .+.+|++.+.+           ....+.+.. |+.++|  ++..++++- .+..          .  ...|..++.++.+
T Consensus        59 ~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~~-~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~  134 (388)
T 1xip_A           59 KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVST-RNALYSLDLEELSEFRTVTSFEKPVFQLKN  134 (388)
T ss_dssp             EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEEE-SSEEEEEESSSTTCEEEEEECSSCEEEEEE
T ss_pred             EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEEc-CCcEEEEEchhhhccCccceeecceeeEEe
Confidence            56678765433           223445666 999999  774444442 1111          1  3455667777766


Q ss_pred             eeCCeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcc--ccccccCCCCC
Q 038439           62 LSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKP--VTWHRFSSPDM  139 (179)
Q Consensus        62 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~--~~~~~~~~~~~  139 (179)
                      .+. .+++++.||.|.+||+.++....    +...|.+++|+|+|  ++.|..||.+++|+....+.  ...+..  +..
T Consensus       135 ~~p-~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~--Pp~  205 (388)
T 1xip_A          135 VNN-TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSL--PSE  205 (388)
T ss_dssp             CSS-EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECC--CHH
T ss_pred             cCC-CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecC--Ccc
Confidence            543 48888999999999999776543    34579999999999  67889999999999887664  322211  100


Q ss_pred             CCCcccCCcceEEEEEEccCCCeEEE
Q 038439          140 DDTDEDAGSYFISAVCWKSDSPTMLT  165 (179)
Q Consensus       140 ~~~~~~~~~~~i~~~~~~~~~~~l~~  165 (179)
                      ...... |...|.+++|.+++.++++
T Consensus       206 ~~~~~~-~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          206 LEELPV-EEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             HHTSCT-TTSEEEEEEESSSSEEEEE
T ss_pred             cccccC-CCeeEEEEEEecCCeEEEE
Confidence            000001 2678999999999988876

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.26  E-value=4.7e-11  Score=90.46  Aligned_cols=116  Identities=9%  Similarity=-0.056  Sum_probs=81.5

Q ss_pred             cccCceeEEEEeeC-CeEE-----EecCCCcEEEEecCCCcce-eeecCCCCCeEEEEEeeCCCEEEEeccCCc------
Q 038439           51 GHKKAVSYVKFLSN-DELA-----SASTDSTLRLWDVKENLPV-RTFRGHMNEKNFVGLTVNSEYIACGSESNE------  117 (179)
Q Consensus        51 ~~~~~i~~~~~~~~-~~l~-----~~~~d~~v~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~------  117 (179)
                      +|...+..++|+|| .+|+     .|+.+..|++||+.+++.+ .... .......++|+|||+.|+.++.+..      
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~  196 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EGGKYATPKWTPDSKGFYYEWLPTDPSIKVD  196 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-CcccccceEEecCCCEEEEEEecCCCCCccc
Confidence            35557889999999 7777     3444578999999998765 2111 1111257899999999998887765      


Q ss_pred             -------EEEEEcCCCccc--cccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCC----cEEEEee
Q 038439          118 -------VYVYHKEISKPV--TWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG----TIKVLVL  177 (179)
Q Consensus       118 -------v~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~iwd~  177 (179)
                             |++|++.+++..  ..+....+          ...+..+.|+|||++|+.++.++    .|.+|+.
T Consensus       197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~----------~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~  259 (695)
T 2bkl_A          197 ERPGYTTIRYHTLGTEPSKDTVVHERTGD----------PTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRP  259 (695)
T ss_dssp             GGGGGCEEEEEETTSCGGGCEEEECCCCC----------TTCEEEEEECTTSCCEEEEEEETTTEEEEEEECT
T ss_pred             cCCCCCEEEEEECCCCchhceEEEecCCC----------CEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcC
Confidence                   999999887632  22221111          34688999999999998877665    5666653

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.23  E-value=4.9e-09  Score=71.53  Aligned_cols=154  Identities=7%  Similarity=0.057  Sum_probs=102.0

Q ss_pred             CccEEEEEcCCceeEEeecC-----CCceeEEEEcCCCCeEEEEeC----------CCcee--e---------ecccCce
Q 038439            3 YGKVKVWCTRQEASVLNIDM-----KANICCVKYNPGSSNYIAKYQ----------STAPC--V---------HGHKKAV   56 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~----------~~~~~--~---------~~~~~~i   56 (179)
                      ++.|.+||..+++.......     ...+..+++.|+|..+++...          ....+  +         ..+....
T Consensus        72 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~p  151 (297)
T 3g4e_A           72 GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDIS  151 (297)
T ss_dssp             TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBE
T ss_pred             CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccc
Confidence            35688888887765433221     235889999999964444311          00111  1         1222335


Q ss_pred             eEEEEeeC-CeE-EEecCCCcEEEEec--CCCcc-----eeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCc
Q 038439           57 SYVKFLSN-DEL-ASASTDSTLRLWDV--KENLP-----VRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK  127 (179)
Q Consensus        57 ~~~~~~~~-~~l-~~~~~d~~v~iwd~--~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~  127 (179)
                      +.++|+|+ +.+ ++.+.++.|.+||+  .++..     ...+......+..+++.++|+++++....+.|..||..+++
T Consensus       152 ngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~  231 (297)
T 3g4e_A          152 NGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK  231 (297)
T ss_dssp             EEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC
T ss_pred             cceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce
Confidence            67899999 544 56666889999987  34432     12222233567889999999888877778889999999888


Q ss_pred             cccccccCCCCCCCCcccCCcceEEEEEEc-cCCCeEEEEeC
Q 038439          128 PVTWHRFSSPDMDDTDEDAGSYFISAVCWK-SDSPTMLTANS  168 (179)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~  168 (179)
                      .+..+...            ...+++++|. |+++.|++++.
T Consensus       232 ~~~~i~~p------------~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          232 RLQTVKLP------------VDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEEEEECS------------SSBEEEEEEESGGGCEEEEEEB
T ss_pred             EEEEEECC------------CCCceEEEEeCCCCCEEEEEcC
Confidence            77666542            3568999998 88887776654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.22  E-value=1e-09  Score=78.30  Aligned_cols=51  Identities=14%  Similarity=0.134  Sum_probs=38.1

Q ss_pred             CcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCC-eEEEEe-CCCcEEEEeecC
Q 038439          116 NEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSP-TMLTAN-SQGTIKVLVLAA  179 (179)
Q Consensus       116 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~  179 (179)
                      +.|.++|..+.+.+..+..             ......+.|+|+++ .+++.. .++.|.++|+.+
T Consensus       350 ~~VsVID~~T~kvv~~I~v-------------g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t  402 (426)
T 3c75_H          350 RFVVVLNAETGERINKIEL-------------GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT  402 (426)
T ss_dssp             EEEEEEETTTCCEEEEEEE-------------EEEECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred             CEEEEEECCCCeEEEEEEC-------------CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC
Confidence            3466666666666655544             44578899999999 888888 599999999864

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.21  E-value=1.1e-08  Score=69.76  Aligned_cols=167  Identities=11%  Similarity=0.139  Sum_probs=101.4

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe---------CCCcee-eec-----ccCceeEEEEeeC-Ce
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY---------QSTAPC-VHG-----HKKAVSYVKFLSN-DE   66 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------~~~~~~-~~~-----~~~~i~~~~~~~~-~~   66 (179)
                      ++.|..||..+++. ..+.....+.+++++|+|. ++++.         .+++.. +..     ....++.+++.|+ ++
T Consensus        34 ~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~-l~v~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l  111 (297)
T 3g4e_A           34 AKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGG-YVATIGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRY  111 (297)
T ss_dssp             TTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSS-EEEEETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCE
T ss_pred             CCEEEEEECCCCcE-EEEeCCCceEEEEECCCCC-EEEEECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCE
Confidence            56778888776654 3455677899999999996 44443         222222 111     1234678999999 65


Q ss_pred             EEEecC---------CCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEE-EeccCCcEEEEEc--CCCcccccccc
Q 038439           67 LASAST---------DSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIA-CGSESNEVYVYHK--EISKPVTWHRF  134 (179)
Q Consensus        67 l~~~~~---------d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~d~~v~vwd~--~~~~~~~~~~~  134 (179)
                      +++...         ...-.+|.+.....+..+.........++|+|+++.++ +.+.++.|.+||+  .++.......+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~  191 (297)
T 3g4e_A          112 FAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSV  191 (297)
T ss_dssp             EEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEE
T ss_pred             EEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEE
Confidence            554422         12345555543222333333334567899999998764 5566788999997  44442111101


Q ss_pred             CCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          135 SSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ...       ..+...+..+++.++|++.++...++.|..||..
T Consensus       192 ~~~-------~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~  228 (297)
T 3g4e_A          192 YKL-------EKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPV  228 (297)
T ss_dssp             EEC-------CGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTT
T ss_pred             EEC-------CCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCC
Confidence            000       0003467889999999877777778889999864

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.20  E-value=3.7e-08  Score=66.64  Aligned_cols=162  Identities=6%  Similarity=-0.041  Sum_probs=105.4

Q ss_pred             CccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeC---------CCcee---eecccCceeEEEEeeC-CeEE
Q 038439            3 YGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQ---------STAPC---VHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~---------~~~~~---~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      ++.|..||.........+. ....+.++++.|++..+++...         .++..   .......+..+++.++ ..++
T Consensus        77 ~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v  156 (299)
T 2z2n_A           77 ANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWF  156 (299)
T ss_dssp             TTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEE
T ss_pred             CCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCEEE
Confidence            4667788765221111222 3457899999999854444321         11111   2223456788899888 6666


Q ss_pred             EecCCCcEEEEecCCCcceee-ecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCC
Q 038439           69 SASTDSTLRLWDVKENLPVRT-FRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAG  147 (179)
Q Consensus        69 ~~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  147 (179)
                      +...++.|..||. +++.... .......+..+++.++|+++++...++.|..||. +++.. .+.....          
T Consensus       157 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~----------  223 (299)
T 2z2n_A          157 TENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT-EFKIPTP----------  223 (299)
T ss_dssp             EETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEECSST----------
T ss_pred             EeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE-EEECCCC----------
Confidence            6666789999998 5554332 2233456789999999998777777889999998 65532 2222111          


Q ss_pred             cceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          148 SYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       148 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      ...+..+++.++|+.+++...++.|..||.
T Consensus       224 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          224 NARPHAITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             TCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred             CCCceeEEECCCCCEEEeccCCceEEEECC
Confidence            456889999999986666657788998885

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.20  E-value=8.2e-09  Score=73.62  Aligned_cols=173  Identities=8%  Similarity=0.001  Sum_probs=106.5

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCCCc-ee-------------e----ecccCceeEEEEeeC
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTA-PC-------------V----HGHKKAVSYVKFLSN   64 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~-------------~----~~~~~~i~~~~~~~~   64 (179)
                      ++.|++||..+++............ ++|+|++..++++...+. .+             +    ........+++++|+
T Consensus       151 ~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~  229 (409)
T 3hrp_A          151 DPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDET  229 (409)
T ss_dssp             TTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTT
T ss_pred             CCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCC
Confidence            5788999988777655554444444 999999976766653221 11             1    113345678899995


Q ss_pred             -CeEEEecCCCcEEEEecCCCcceee----ecCCCCCe-E-EEEEeeC-CCEEEEeccCCcEEEEEcCCCccccccccC-
Q 038439           65 -DELASASTDSTLRLWDVKENLPVRT----FRGHMNEK-N-FVGLTVN-SEYIACGSESNEVYVYHKEISKPVTWHRFS-  135 (179)
Q Consensus        65 -~~l~~~~~d~~v~iwd~~~~~~~~~----~~~~~~~v-~-~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~-  135 (179)
                       +.|+.+..++.|+.||...+.....    ........ . .++|+|+ +.++++-...+.|+.|+.... ........ 
T Consensus       230 ~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~  308 (409)
T 3hrp_A          230 EEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSAT  308 (409)
T ss_dssp             SSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTT
T ss_pred             CCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCC
Confidence             7776677788999999987653222    11222222 3 8999995 666666677889999987643 11111100 


Q ss_pred             CCCCC-CCcccCCcceEEEEEEccCCCeEEEEe-CCCcEEEEee
Q 038439          136 SPDMD-DTDEDAGSYFISAVCWKSDSPTMLTAN-SQGTIKVLVL  177 (179)
Q Consensus       136 ~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~  177 (179)
                      ..... .......-.....++++|+|+++++-+ .++.|+.|++
T Consensus       309 ~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~  352 (409)
T 3hrp_A          309 QKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDI  352 (409)
T ss_dssp             CCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEET
T ss_pred             CCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEEC
Confidence            00000 000000023478999999999777777 7889999984

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.19  E-value=3.1e-09  Score=81.17  Aligned_cols=141  Identities=12%  Similarity=0.015  Sum_probs=86.0

Q ss_pred             ceeEEEEcCCCCeEEEEe-CCCc---ee--e--------ec--ccCceeEEEEeeCCeEEEecCCCc-------------
Q 038439           25 NICCVKYNPGSSNYIAKY-QSTA---PC--V--------HG--HKKAVSYVKFLSNDELASASTDST-------------   75 (179)
Q Consensus        25 ~v~~~~~~~~~~~~~~~~-~~~~---~~--~--------~~--~~~~i~~~~~~~~~~l~~~~~d~~-------------   75 (179)
                      .+..++|||||+.++.+. ..+.   .+  +        ..  +...+..++|+|+..|+.++.++.             
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~  243 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQ  243 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTTSEEEEEECCCC--------CCCCC
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECCCEEEEEEecCcccccccccCCCCC
Confidence            688999999997666554 1111   12  1        11  111225678999855665555443             


Q ss_pred             -EEEEecCCCcc--eeeecC--CCCCeEEEEEeeCCCEEEEeccC-----CcEEEEEcCCC--ccccccccCCCCCCCCc
Q 038439           76 -LRLWDVKENLP--VRTFRG--HMNEKNFVGLTVNSEYIACGSES-----NEVYVYHKEIS--KPVTWHRFSSPDMDDTD  143 (179)
Q Consensus        76 -v~iwd~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~~~~~~~d-----~~v~vwd~~~~--~~~~~~~~~~~~~~~~~  143 (179)
                       |++|++.++..  ...+..  +...+..+.|+|||++|+..+.+     ..|++||+.++  +....+...        
T Consensus       244 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~--------  315 (741)
T 1yr2_A          244 TVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD--------  315 (741)
T ss_dssp             EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS--------
T ss_pred             EEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC--------
Confidence             88999877652  223332  23357889999999998877654     38999999876  312222211        


Q ss_pred             ccCCcceEEEEEEccCCCeEEEEeCC----CcEEEEeec
Q 038439          144 EDAGSYFISAVCWKSDSPTMLTANSQ----GTIKVLVLA  178 (179)
Q Consensus       144 ~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd~~  178 (179)
                          ....... ++|+++.|+..+.+    +.|.+||+.
T Consensus       316 ----~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~  349 (741)
T 1yr2_A          316 ----LKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLS  349 (741)
T ss_dssp             ----SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECS
T ss_pred             ----CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCC
Confidence                1122333 34888888877763    458888875

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.17  E-value=2.7e-12  Score=90.36  Aligned_cols=158  Identities=9%  Similarity=0.029  Sum_probs=81.3

Q ss_pred             CCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeC----------CCcee--eecccC-cee-EEEEeeCCeE
Q 038439            2 AYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQ----------STAPC--VHGHKK-AVS-YVKFLSNDEL   67 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----------~~~~~--~~~~~~-~i~-~~~~~~~~~l   67 (179)
                      .||.|+.||..+++.+..+.. +++.+..+.+++..+++.+.          +++.+  ...+.. .+. ...+..++.+
T Consensus        17 ~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v   95 (369)
T 2hz6_A           17 LDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGIL   95 (369)
T ss_dssp             TTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----C
T ss_pred             CCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEE
Confidence            589999999999999888776 55655555566633333222          23322  111110 010 0011122667


Q ss_pred             EEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCC
Q 038439           68 ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAG  147 (179)
Q Consensus        68 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  147 (179)
                      ++++.++.+..||..+++.+..+..+.    ...++|++..+++++.++.|+.||.++++.+..+...            
T Consensus        96 ~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~------------  159 (369)
T 2hz6_A           96 YMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF------------  159 (369)
T ss_dssp             CCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE------------
T ss_pred             EEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc------------
Confidence            788889999999999998887776443    2345678888999999999999999999876554321            


Q ss_pred             cceEEEEEEccCC---CeEEEEeCCCcEEEEeec
Q 038439          148 SYFISAVCWKSDS---PTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       148 ~~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~  178 (179)
                        ......+.++.   ..+++++.||.++.||.+
T Consensus       160 --~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~  191 (369)
T 2hz6_A          160 --DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSE  191 (369)
T ss_dssp             --EECCBCCCCCTTCCCCEEEEETSCEEEEECTT
T ss_pred             --cccCccccCCccccceEEEECCCCEEEEEECC
Confidence              11222233322   557778889999998865

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.16  E-value=5.3e-08  Score=65.90  Aligned_cols=161  Identities=7%  Similarity=-0.002  Sum_probs=106.5

Q ss_pred             CccEEEEEcCCceeEEee-c-CCCceeEEEEcCCCCeEEEEeCCC---------cee---eecccCceeEEEEeeC-CeE
Q 038439            3 YGKVKVWCTRQEASVLNI-D-MKANICCVKYNPGSSNYIAKYQST---------APC---VHGHKKAVSYVKFLSN-DEL   67 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~~~~~~---------~~~---~~~~~~~i~~~~~~~~-~~l   67 (179)
                      ++.|.+||.. ++..... . ....+.++++.+++..+++....+         +..   +......+..+.+.++ ..+
T Consensus        35 ~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~  113 (299)
T 2z2n_A           35 ANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIW  113 (299)
T ss_dssp             TTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEE
T ss_pred             CCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEE
Confidence            5678888877 4432221 1 346799999999985444432111         111   1123446788899888 666


Q ss_pred             EEecCCCcEEEEecCCCcceee-ecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccC
Q 038439           68 ASASTDSTLRLWDVKENLPVRT-FRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDA  146 (179)
Q Consensus        68 ~~~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  146 (179)
                      ++...++.|.+||. +++.... .......+..+++.++|+.+++...++.|..||. +++... +.....         
T Consensus       114 v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~---------  181 (299)
T 2z2n_A          114 FTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE-FKIPTP---------  181 (299)
T ss_dssp             EEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EECSST---------
T ss_pred             EEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE-eeCCCC---------
Confidence            76667889999998 4443322 2223456889999999988887777889999998 554432 211111         


Q ss_pred             CcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          147 GSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       147 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                       ...+..+++.++++.+++...++.|.+||.
T Consensus       182 -~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~  211 (299)
T 2z2n_A          182 -ASGPVGITKGNDDALWFVEIIGNKIGRITT  211 (299)
T ss_dssp             -TCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             -CCcceeEEECCCCCEEEEccCCceEEEECC
Confidence             345788999999987766666788988875

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.12  E-value=1.7e-08  Score=68.91  Aligned_cols=163  Identities=6%  Similarity=0.019  Sum_probs=103.0

Q ss_pred             CccEEEEEcCCceeEEeec-----CCCceeEEEEcCC-CCeEEEEeCC---------Ccee-e-ec-----ccCceeEEE
Q 038439            3 YGKVKVWCTRQEASVLNID-----MKANICCVKYNPG-SSNYIAKYQS---------TAPC-V-HG-----HKKAVSYVK   60 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~-~~~~~~~~~~---------~~~~-~-~~-----~~~~i~~~~   60 (179)
                      ++.|.+||..+++......     +...+.+++++++ + .++++...         ++.. + ..     ....+.+++
T Consensus        45 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g-~l~v~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~  123 (314)
T 1pjx_A           45 AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN-QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA  123 (314)
T ss_dssp             CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS-EEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEE
T ss_pred             CCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCC-cEEEEECCCCEEEEeCCCCEEEEEeccCCCccccCCcCEE
Confidence            5789999987776543222     3356899999999 7 55554311         2211 2 11     113477899


Q ss_pred             EeeC-CeEEEecCC---------------CcEEEEecCCCcceeeecCCCCCeEEEEEe----eCCCEEEEe-ccCCcEE
Q 038439           61 FLSN-DELASASTD---------------STLRLWDVKENLPVRTFRGHMNEKNFVGLT----VNSEYIACG-SESNEVY  119 (179)
Q Consensus        61 ~~~~-~~l~~~~~d---------------~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~-~~d~~v~  119 (179)
                      +.++ .++++...+               +.|..+|.. ++.. .+..+......++++    |+++.++++ ..++.|.
T Consensus       124 ~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~  201 (314)
T 1pjx_A          124 FDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLW  201 (314)
T ss_dssp             ECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEE
T ss_pred             ECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEE
Confidence            9998 666665544               467777765 4433 222233456789999    998765544 5678999


Q ss_pred             EEEcC-CCcccc--cc-ccCCCCCCCCcccCCc-ceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          120 VYHKE-ISKPVT--WH-RFSSPDMDDTDEDAGS-YFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       120 vwd~~-~~~~~~--~~-~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      +||+. +++...  .+ ....         + . ..+..++++++|+++++...++.|.+||.+
T Consensus       202 ~~~~~~~g~~~~~~~~~~~~~---------~-~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~  255 (314)
T 1pjx_A          202 SYDIKGPAKIENKKVWGHIPG---------T-HEGGADGMDFDEDNNLLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             EEEEEETTEEEEEEEEEECCC---------C-SSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             EEECCCCCccccceEEEECCC---------C-CCCCCCceEECCCCCEEEEEcCCCEEEEEcCC
Confidence            99986 333211  11 1110         0 2 457889999999988887788899999865

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.11  E-value=3.1e-09  Score=78.69  Aligned_cols=100  Identities=6%  Similarity=-0.071  Sum_probs=81.4

Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcC--CCccccccccCCCCCCCC
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKE--ISKPVTWHRFSSPDMDDT  142 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~--~~~~~~~~~~~~~~~~~~  142 (179)
                      ..+++...++.|.++|..+++.+..+... ..+..+.++|||+++++++.++.|.+||+.  +.+.+..+..        
T Consensus       168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~--------  238 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--------  238 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--------
T ss_pred             eEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec--------
Confidence            45667778999999999999988888643 356789999999999999999999999996  6666655543        


Q ss_pred             cccCCcceEEEEEEc----cCCCeEEEEeC-CCcEEEEeec
Q 038439          143 DEDAGSYFISAVCWK----SDSPTMLTANS-QGTIKVLVLA  178 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~----~~~~~l~~~~~-dg~i~iwd~~  178 (179)
                           ......++|+    |+|+++++++. ++.+.++|..
T Consensus       239 -----G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~  274 (567)
T 1qks_A          239 -----GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE  274 (567)
T ss_dssp             -----CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred             -----CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECC
Confidence                 4457889999    69999888776 5899999864

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.10  E-value=5.9e-09  Score=73.36  Aligned_cols=102  Identities=11%  Similarity=0.044  Sum_probs=68.4

Q ss_pred             CeEEEecCCCcEEEEecCCCc--ceeeec---------C-CCCCeEEEEEeeCCCEEEEecc----------CCcEEEEE
Q 038439           65 DELASASTDSTLRLWDVKENL--PVRTFR---------G-HMNEKNFVGLTVNSEYIACGSE----------SNEVYVYH  122 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~--~~~~~~---------~-~~~~v~~~~~~~~~~~~~~~~~----------d~~v~vwd  122 (179)
                      +.++..+.++.|.+.|+....  .+..+.         + .......++++++++.+++...          .+.|.++|
T Consensus       238 G~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD  317 (386)
T 3sjl_D          238 GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD  317 (386)
T ss_dssp             TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred             CcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEE
Confidence            334344556677777765432  111111         0 0122334777888888777643          25799999


Q ss_pred             cCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCC-eEEEEe-CCCcEEEEeecC
Q 038439          123 KEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSP-TMLTAN-SQGTIKVLVLAA  179 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~  179 (179)
                      +.+++.+..+..             ...++.+.+++|++ +|+++. .++.|.++|.++
T Consensus       318 ~~t~kv~~~i~v-------------g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t  363 (386)
T 3sjl_D          318 AKTGERLAKFEM-------------GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES  363 (386)
T ss_dssp             TTTCCEEEEEEE-------------EEEECEEEECSSSSCEEEEEETTTTEEEEEETTT
T ss_pred             CCCCeEEEEEEC-------------CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence            999999888876             56789999999997 676654 489999999764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.09  E-value=7e-08  Score=64.62  Aligned_cols=171  Identities=8%  Similarity=0.002  Sum_probs=107.5

Q ss_pred             CccEEEEEcCCceeEEeecCCCce--eEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-Ce
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANI--CCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-DE   66 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~~   66 (179)
                      +++|.+.|+.+++.+..+......  ..+++.  +..++++.           .+.+.+  +.-...  ....++++ ..
T Consensus        43 ~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~--~g~glt~Dg~~  118 (266)
T 2iwa_A           43 RSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMK--DGWGLATDGKI  118 (266)
T ss_dssp             TCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSS--SCCEEEECSSS
T ss_pred             CCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCC--CeEEEEECCCE
Confidence            578999999999998887644433  344444  44666665           233333  221101  12335567 55


Q ss_pred             EEEecCCCcEEEEecCCCcceeeecCCC-----CCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCC
Q 038439           67 LASASTDSTLRLWDVKENLPVRTFRGHM-----NEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDD  141 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~  141 (179)
                      ++.+..++.|.++|..+.+.+..+.-..     ..++.+.|. ++..++....++.|.+.|..+++.+..+.........
T Consensus       119 l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~  197 (266)
T 2iwa_A          119 LYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKL  197 (266)
T ss_dssp             EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHH
T ss_pred             EEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccc
Confidence            6666678899999999988777765321     235678887 7766666666889999999999987776542100000


Q ss_pred             -CcccCCcceEEEEEEccCCCeEEE-EeCCCcEEEEeec
Q 038439          142 -TDEDAGSYFISAVCWKSDSPTMLT-ANSQGTIKVLVLA  178 (179)
Q Consensus       142 -~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~iwd~~  178 (179)
                       ..........+.++|+|+++.+++ +...+++.+.++.
T Consensus       198 ~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~  236 (266)
T 2iwa_A          198 IDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH  236 (266)
T ss_dssp             HHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             ccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence             000000236789999999876555 5567888887764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.08  E-value=1.9e-08  Score=70.63  Aligned_cols=162  Identities=10%  Similarity=0.038  Sum_probs=100.7

Q ss_pred             CccEEEEEcCCceeEEeecCC--------CceeEEEEcCCCCeEEEEeCC-Ccee-e---ecccCceeEEE------Eee
Q 038439            3 YGKVKVWCTRQEASVLNIDMK--------ANICCVKYNPGSSNYIAKYQS-TAPC-V---HGHKKAVSYVK------FLS   63 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~~~~~~-~~~~-~---~~~~~~i~~~~------~~~   63 (179)
                      +++|.+||..+++.+.++...        .....++++|+|+.++++... ...+ +   ...+  +..+.      ..|
T Consensus        95 ~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v~~~~~~~p  172 (368)
T 1mda_H           95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKSASCFHIHP  172 (368)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEECSSCCCCEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEECCCceEEcc
Confidence            678999999999999998643        357899999999877776421 2222 2   1111  22221      123


Q ss_pred             C--CeEEEecCCCcEEEEecCC-----Ccc-------------------------------------------eeeecCC
Q 038439           64 N--DELASASTDSTLRLWDVKE-----NLP-------------------------------------------VRTFRGH   93 (179)
Q Consensus        64 ~--~~l~~~~~d~~v~iwd~~~-----~~~-------------------------------------------~~~~~~~   93 (179)
                      +  ..+++.+.|+.+.+.|+.+     ++.                                           +..+...
T Consensus       173 ~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~  252 (368)
T 1mda_H          173 GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGN  252 (368)
T ss_dssp             EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSS
T ss_pred             CCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEec
Confidence            3  3344444555555555443     111                                           0111000


Q ss_pred             ----------CCCeEEEEEeeCCCEEEEecc---------CCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEE
Q 038439           94 ----------MNEKNFVGLTVNSEYIACGSE---------SNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAV  154 (179)
Q Consensus        94 ----------~~~v~~~~~~~~~~~~~~~~~---------d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  154 (179)
                                ......++++|+++.++++..         ++.+.++|+.+.+.+..+..             ......+
T Consensus       253 ~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v-------------g~~p~gi  319 (368)
T 1mda_H          253 ESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-------------GHDSDAI  319 (368)
T ss_dssp             CTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-------------EEEECEE
T ss_pred             cccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC-------------CCCcceE
Confidence                      001112679999988876543         23566999999998887765             5578999


Q ss_pred             EEccCCCe-EEEEe-CCCcEEEEeecC
Q 038439          155 CWKSDSPT-MLTAN-SQGTIKVLVLAA  179 (179)
Q Consensus       155 ~~~~~~~~-l~~~~-~dg~i~iwd~~~  179 (179)
                      .|+|+++. +++.. .++.|.++|+++
T Consensus       320 ~~s~Dg~~l~va~~~~~~~VsVID~~t  346 (368)
T 1mda_H          320 IAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             EECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             EECCCCCEEEEEccCCCCeEEEEECCC
Confidence            99999985 55555 589999999864

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.05  E-value=2e-08  Score=76.71  Aligned_cols=160  Identities=9%  Similarity=-0.040  Sum_probs=100.6

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCCCc-------------ee---------------eec--cc
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTA-------------PC---------------VHG--HK   53 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------------~~---------------~~~--~~   53 (179)
                      ..|++||+.+++.+........+..++|+|+ +.++.+.....             .+               +..  +.
T Consensus       189 ~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~  267 (741)
T 1yr2_A          189 RTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELP  267 (741)
T ss_dssp             EEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCT
T ss_pred             EEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCC
Confidence            4699999999887654222223468899999 77777651111             11               111  12


Q ss_pred             CceeEEEEeeC-CeEEEecCC-----CcEEEEecCCC--cceeeecCCCCCeEEEEEeeCCCEEEEecc----CCcEEEE
Q 038439           54 KAVSYVKFLSN-DELASASTD-----STLRLWDVKEN--LPVRTFRGHMNEKNFVGLTVNSEYIACGSE----SNEVYVY  121 (179)
Q Consensus        54 ~~i~~~~~~~~-~~l~~~~~d-----~~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----d~~v~vw  121 (179)
                      ..+..+.|+|+ .+|+..+.+     ..|.+||+.++  +....+..+....... ++|+|+.|+..+.    ++.|.+|
T Consensus       268 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~  346 (741)
T 1yr2_A          268 KRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRV  346 (741)
T ss_dssp             TCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEE
T ss_pred             eEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEE
Confidence            24678899999 777766643     38999999876  3144554444444444 4588888877655    3459999


Q ss_pred             EcCCCc-cccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          122 HKEISK-PVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       122 d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      |+.++. ....+.. ..          ...+..+.|. ++.++++...|+..+||.+
T Consensus       347 d~~~~~~~~~~l~~-~~----------~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~  391 (741)
T 1yr2_A          347 DLSGSTPRFDTVVP-ES----------KDNLESVGIA-GNRLFASYIHDAKSQVLAF  391 (741)
T ss_dssp             ECSSSSCEEEEEEC-CC----------SSEEEEEEEE-BTEEEEEEEETTEEEEEEE
T ss_pred             eCCCCccccEEEec-CC----------CCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence            998752 2222211 11          3356677777 5667788888988877754

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.05  E-value=1.8e-07  Score=64.66  Aligned_cols=152  Identities=8%  Similarity=0.009  Sum_probs=96.1

Q ss_pred             cEEEEEcCCceeEEeecC-----CCceeEEEEcCCCCeEEEEeC------CCcee-ee--------cccCceeEEEEeeC
Q 038439            5 KVKVWCTRQEASVLNIDM-----KANICCVKYNPGSSNYIAKYQ------STAPC-VH--------GHKKAVSYVKFLSN   64 (179)
Q Consensus         5 ~i~vwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~------~~~~~-~~--------~~~~~i~~~~~~~~   64 (179)
                      .|.+||..+++.......     ...+.+++++|+|..+++...      ..... +.        .+......++|+|+
T Consensus       110 gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~i~~s~d  189 (326)
T 2ghs_A          110 GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPD  189 (326)
T ss_dssp             EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTT
T ss_pred             CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEEEeeCCCcccCCeEEcCC
Confidence            378888877765433221     235889999999964443321      01111 22        22234567889999


Q ss_pred             -CeE-EEecCCCcEEEEecC--CC-cc-----eeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccccc
Q 038439           65 -DEL-ASASTDSTLRLWDVK--EN-LP-----VRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF  134 (179)
Q Consensus        65 -~~l-~~~~~d~~v~iwd~~--~~-~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~  134 (179)
                       +.+ ++.+.++.|.+||+.  ++ +.     ...+......+..+.+.++|.++++...++.|..||. +++.+..+..
T Consensus       190 g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~  268 (326)
T 2ghs_A          190 GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV  268 (326)
T ss_dssp             SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC
T ss_pred             CCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEEC
Confidence             555 455567899999986  45 32     2222223445678999999988777666788999998 4555544433


Q ss_pred             CCCCCCCCcccCCcceEEEEEEc-cCCCeEEEEeCC
Q 038439          135 SSPDMDDTDEDAGSYFISAVCWK-SDSPTMLTANSQ  169 (179)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d  169 (179)
                      .            ...+.+++|. ++++.|++++..
T Consensus       269 ~------------~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          269 P------------GKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             S------------CSBEEEEEEESTTSCEEEEEEBC
T ss_pred             C------------CCCcEEEEEecCCCCEEEEEecC
Confidence            1            4468999998 888877665543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.02  E-value=8.6e-08  Score=65.56  Aligned_cols=142  Identities=8%  Similarity=-0.004  Sum_probs=93.5

Q ss_pred             cCCCceeEEEEcCCCCeEEEEeCC----------Ccee-eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCccee
Q 038439           21 DMKANICCVKYNPGSSNYIAKYQS----------TAPC-VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVR   88 (179)
Q Consensus        21 ~~~~~v~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~   88 (179)
                      ..........|+|+++.++.++..          ++.. +..+...+..+.+.++ .++++...++.|.+|+.. ++. .
T Consensus        42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~-~  119 (305)
T 3dr2_A           42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQA-H  119 (305)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-E
T ss_pred             cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCE-E
Confidence            345567889999999767777611          1111 3334556788999999 655555556789999976 443 2


Q ss_pred             eecCC-----CCCeEEEEEeeCCCEEEE----ecc-------------CCcEEEEEcCCCccccccccCCCCCCCCcccC
Q 038439           89 TFRGH-----MNEKNFVGLTVNSEYIAC----GSE-------------SNEVYVYHKEISKPVTWHRFSSPDMDDTDEDA  146 (179)
Q Consensus        89 ~~~~~-----~~~v~~~~~~~~~~~~~~----~~~-------------d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  146 (179)
                      .+...     ...+..+++.|+|+++++    |..             .+.|..+|..+++......             
T Consensus       120 ~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~-------------  186 (305)
T 3dr2_A          120 LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMAD-------------  186 (305)
T ss_dssp             EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEE-------------
T ss_pred             EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEec-------------
Confidence            22211     134567999999998886    432             2457777776665433221             


Q ss_pred             CcceEEEEEEccCCCeEEEEeCC------CcEEEEeec
Q 038439          147 GSYFISAVCWKSDSPTMLTANSQ------GTIKVLVLA  178 (179)
Q Consensus       147 ~~~~i~~~~~~~~~~~l~~~~~d------g~i~iwd~~  178 (179)
                       ......++|+|+++.|+.+...      +.|.+|++.
T Consensus       187 -~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~  223 (305)
T 3dr2_A          187 -LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWR  223 (305)
T ss_dssp             -ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEE
T ss_pred             -CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEec
Confidence             3356789999999988877665      689999874

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.02  E-value=6.3e-07  Score=60.60  Aligned_cols=161  Identities=7%  Similarity=-0.017  Sum_probs=104.4

Q ss_pred             CccEEEEEcCCceeEE-eec-CCCceeEEEEcCCCCeEEEEeCC---------Ccee---eecccCceeEEEEeeC-CeE
Q 038439            3 YGKVKVWCTRQEASVL-NID-MKANICCVKYNPGSSNYIAKYQS---------TAPC---VHGHKKAVSYVKFLSN-DEL   67 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~-~~~-~~~~v~~~~~~~~~~~~~~~~~~---------~~~~---~~~~~~~i~~~~~~~~-~~l   67 (179)
                      ++.|.+||.. ++... .+. ....+.++++.+++..+++....         ++..   .......+..+++.++ ..+
T Consensus        40 ~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~  118 (300)
T 2qc5_A           40 ANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIW  118 (300)
T ss_dssp             TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEE
T ss_pred             CCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCCCCeEEecCCCCCCCCccceECCCCCEE
Confidence            5678888876 44332 122 23578999999998544443211         1111   2223356788888888 666


Q ss_pred             EEecCCCcEEEEecCCCccee-eecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccC
Q 038439           68 ASASTDSTLRLWDVKENLPVR-TFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDA  146 (179)
Q Consensus        68 ~~~~~d~~v~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  146 (179)
                      ++...++.|..+|.. ++... .+......+..+++.++++.+++...++.|..+|. +++... +.....         
T Consensus       119 v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~---------  186 (300)
T 2qc5_A          119 FTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPTN---------  186 (300)
T ss_dssp             EEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSST---------
T ss_pred             EEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCC---------
Confidence            666667889999987 54432 22223456889999999997777766788999998 444332 222111         


Q ss_pred             CcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          147 GSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       147 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                       ...+..+++.++++.+++....+.|.+||.
T Consensus       187 -~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  216 (300)
T 2qc5_A          187 -AAAPVGITSGNDGALWFVEIMGNKIGRITT  216 (300)
T ss_dssp             -TCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             -CCCcceEEECCCCCEEEEccCCCEEEEEcC
Confidence             346788999999987766666778888875

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.01  E-value=7.1e-07  Score=60.34  Aligned_cols=161  Identities=5%  Similarity=-0.039  Sum_probs=103.3

Q ss_pred             CccEEEEEcCCceeEE-eec-CCCceeEEEEcCCCCeEEEEeC---------CCcee---eecccCceeEEEEeeC-CeE
Q 038439            3 YGKVKVWCTRQEASVL-NID-MKANICCVKYNPGSSNYIAKYQ---------STAPC---VHGHKKAVSYVKFLSN-DEL   67 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~-~~~-~~~~v~~~~~~~~~~~~~~~~~---------~~~~~---~~~~~~~i~~~~~~~~-~~l   67 (179)
                      ++.|..+|.. ++... ... ....+.++++.+++..+++...         .++..   +......+..+.+.++ ..+
T Consensus        82 ~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~  160 (300)
T 2qc5_A           82 ANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALW  160 (300)
T ss_dssp             TTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSSEE
T ss_pred             CCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEEECCCCCEE
Confidence            4667888876 44321 122 3466899999999854444321         12221   2223456778888888 666


Q ss_pred             EEecCCCcEEEEecCCCcceee-ecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccC
Q 038439           68 ASASTDSTLRLWDVKENLPVRT-FRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDA  146 (179)
Q Consensus        68 ~~~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  146 (179)
                      ++...++.|..+|. +++.... .......+..+++.++|.++++....+.|.+||. +++... ......         
T Consensus       161 v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~---------  228 (300)
T 2qc5_A          161 FTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE-YDIPTP---------  228 (300)
T ss_dssp             EEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSST---------
T ss_pred             EEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE-EECCCC---------
Confidence            66666788999998 4543321 2223456789999999987777777788999998 444322 211111         


Q ss_pred             CcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          147 GSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       147 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                       ...+..+++.++|+.+++...++.|..||.
T Consensus       229 -~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          229 -NARPHAITAGKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             -TCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred             -CCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence             446789999999986666666788888875

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.01  E-value=2.2e-07  Score=64.19  Aligned_cols=161  Identities=4%  Similarity=-0.107  Sum_probs=98.7

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe--------CCCcee-eecc-----cCceeEEEEeeC-CeE
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY--------QSTAPC-VHGH-----KKAVSYVKFLSN-DEL   67 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--------~~~~~~-~~~~-----~~~i~~~~~~~~-~~l   67 (179)
                      ++.|..||..+++.. .+.....+.+++|+|++..++++.        .+++.. +...     ...+..+.++|+ .++
T Consensus        70 ~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~dg~l~v~~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~  148 (326)
T 2ghs_A           70 ERELHELHLASGRKT-VHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALW  148 (326)
T ss_dssp             GTEEEEEETTTTEEE-EEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEE
T ss_pred             CCEEEEEECCCCcEE-EEECCCcceEEEEeCCCeEEEEECCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEE
Confidence            467888888776543 344567899999999995444432        122222 2111     235788999999 655


Q ss_pred             EEecC------CCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEe-ccCCcEEEEEcC--CC-cccc--cc-cc
Q 038439           68 ASAST------DSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACG-SESNEVYVYHKE--IS-KPVT--WH-RF  134 (179)
Q Consensus        68 ~~~~~------d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~d~~v~vwd~~--~~-~~~~--~~-~~  134 (179)
                      ++...      .+.|..++  +++. ..+.........++|+|+++.++.+ ..++.|.+||+.  ++ +...  .+ ..
T Consensus       149 v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~  225 (326)
T 2ghs_A          149 IGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS  225 (326)
T ss_dssp             EEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC
T ss_pred             EEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEEC
Confidence            54432      23455555  4443 3332233456789999999876544 557899999986  44 3211  11 11


Q ss_pred             CCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          135 SSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      ..         . ...+..+++.++|++.++...++.|.+||.
T Consensus       226 ~~---------~-~~~p~gi~~d~~G~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          226 TG---------I-KGGMDGSVCDAEGHIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             TT---------S-SSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             CC---------C-CCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence            10         0 345678999999987777666788988875

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.99  E-value=2.4e-08  Score=70.32  Aligned_cols=112  Identities=13%  Similarity=-0.075  Sum_probs=75.4

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCCCceeeecccCceeEEEEeeCCeEEEecCCCcEEEEecC
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDELASASTDSTLRLWDVK   82 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~v~iwd~~   82 (179)
                      ++.|.+.|..+++.+.++....... ++++|+|+.++++..                 +.+.  ..-|..++.|.+||..
T Consensus        58 ~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~-----------------~~~r--~~~G~~~~~VsviD~~  117 (386)
T 3sjl_D           58 VTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHAST-----------------VFSR--IARGERTDYVEVFDPV  117 (386)
T ss_dssp             SEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEE-----------------EEEE--TTEEEEEEEEEEECTT
T ss_pred             CCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcc-----------------cccc--cccCCCCCEEEEEECC
Confidence            5677777777777777776433333 777777755544410                 0000  0012235679999999


Q ss_pred             CCcceeeecCCC-------CCeEEEEEeeCCCEEEEecc--CCcEEEEEcCCCcccccccc
Q 038439           83 ENLPVRTFRGHM-------NEKNFVGLTVNSEYIACGSE--SNEVYVYHKEISKPVTWHRF  134 (179)
Q Consensus        83 ~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~--d~~v~vwd~~~~~~~~~~~~  134 (179)
                      +.+.+..+....       .....+.++|||++++++..  ++.|.++|+.+++.+..+..
T Consensus       118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v  178 (386)
T 3sjl_D          118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV  178 (386)
T ss_dssp             TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred             CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC
Confidence            998887764321       24567999999999888764  68999999999998877754

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.97  E-value=1.5e-07  Score=69.36  Aligned_cols=175  Identities=10%  Similarity=-0.011  Sum_probs=104.8

Q ss_pred             CCccEEEEEcCCceeEEee--cCCCceeEEEE-c-CCCCeEEEEe-------CCCcee------------eeccc-----
Q 038439            2 AYGKVKVWCTRQEASVLNI--DMKANICCVKY-N-PGSSNYIAKY-------QSTAPC------------VHGHK-----   53 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~--~~~~~v~~~~~-~-~~~~~~~~~~-------~~~~~~------------~~~~~-----   53 (179)
                      ++++|.+.|+.+.++.+.+  .....+..+++ + |++.++++.+       +.++.+            +..-+     
T Consensus       110 ~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~  189 (595)
T 1fwx_A          110 ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAW  189 (595)
T ss_dssp             TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEE
T ss_pred             CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEE
Confidence            4567889999999887744  44566888888 5 8887777775       111111            11111     


Q ss_pred             -----CceeEEEEeeC-CeEEEecCCC--------------------------------------cEEEEecCC--Ccc-
Q 038439           54 -----KAVSYVKFLSN-DELASASTDS--------------------------------------TLRLWDVKE--NLP-   86 (179)
Q Consensus        54 -----~~i~~~~~~~~-~~l~~~~~d~--------------------------------------~v~iwd~~~--~~~-   86 (179)
                           +.-..++++|+ .++++++.+.                                      .|.+.|.++  ++. 
T Consensus       190 qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~  269 (595)
T 1fwx_A          190 QVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLF  269 (595)
T ss_dssp             EEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSS
T ss_pred             EEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCcee
Confidence                 11234667777 6666666442                                      366777766  433 


Q ss_pred             eeeecCCCCCeEEEEEeeCCCEEEEec-cCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEE
Q 038439           87 VRTFRGHMNEKNFVGLTVNSEYIACGS-ESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLT  165 (179)
Q Consensus        87 ~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  165 (179)
                      +..+.. .....++.++|||+++++++ .+..|.++|+.+.+....-.+............ ......++|+|+|....+
T Consensus       270 ~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG~aY~t  347 (595)
T 1fwx_A          270 TRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHTAFDGRGNAYTS  347 (595)
T ss_dssp             EEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEEEECTTSEEEEE
T ss_pred             EEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcceEEECCCCeEEEE
Confidence            344432 22456799999999876554 588999999996532100000000000000000 556889999999944445


Q ss_pred             EeCCCcEEEEeec
Q 038439          166 ANSQGTIKVLVLA  178 (179)
Q Consensus       166 ~~~dg~i~iwd~~  178 (179)
                      .--|+.|.+||+.
T Consensus       348 ~~ldsqV~kwdi~  360 (595)
T 1fwx_A          348 LFLDSQVVKWNIE  360 (595)
T ss_dssp             ETTTTEEEEEEHH
T ss_pred             EecCCcEEEEEhh
Confidence            5569999999974

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.97  E-value=1.5e-07  Score=62.59  Aligned_cols=162  Identities=11%  Similarity=0.087  Sum_probs=102.9

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-CeEEE
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-DELAS   69 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~   69 (179)
                      ..|+++|+++++.+..+............+++..++.+.           .+.+.+  +.-..   ....+.++ ..|+.
T Consensus        65 S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~  141 (262)
T 3nol_A           65 SSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIM  141 (262)
T ss_dssp             EEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCCEEECSSCEEE
T ss_pred             ceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC---CceEEecCCCEEEE
Confidence            389999999999998887666555444444455665554           222332  21111   11233456 66666


Q ss_pred             ecCCCcEEEEecCCCcceeeecCCC-----CCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439           70 ASTDSTLRLWDVKENLPVRTFRGHM-----NEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE  144 (179)
Q Consensus        70 ~~~d~~v~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~  144 (179)
                      +..++.|.++|..+.+.+..+....     ..++.+.|. +|+.++..-.++.|.+.|.++++.+..+.+..-.......
T Consensus       142 SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~  220 (262)
T 3nol_A          142 SDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPL  220 (262)
T ss_dssp             CCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSC
T ss_pred             ECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccc
Confidence            6667889999999988887765421     334557776 7876666667889999999999987776653211000000


Q ss_pred             cCCcceEEEEEEccCCCeEEEEeCC
Q 038439          145 DAGSYFISAVCWKSDSPTMLTANSQ  169 (179)
Q Consensus       145 ~~~~~~i~~~~~~~~~~~l~~~~~d  169 (179)
                      .......+.++|+|+++.|++.+..
T Consensus       221 ~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          221 PSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             CSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             cCcCCceEEEEEcCCCCEEEEECCC
Confidence            0113467899999998888877753

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.94  E-value=2.8e-07  Score=63.03  Aligned_cols=120  Identities=7%  Similarity=0.005  Sum_probs=74.8

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCC----------Ccee-eecc-----cCceeEEEEeeC-C
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQS----------TAPC-VHGH-----KKAVSYVKFLSN-D   65 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----------~~~~-~~~~-----~~~i~~~~~~~~-~   65 (179)
                      ++.|..|+. +++..........+..++++++|. ++++...          ++.. +..+     ...+..+.+.|+ .
T Consensus        66 ~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~  143 (305)
T 3dr2_A           66 GRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGA  143 (305)
T ss_dssp             TTEEEEEET-TSCEEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSCEEEEECEETTEECSCCCCEEECTTSC
T ss_pred             CCEEEEEeC-CCCEEEEeCCCCccceeeECCCCC-EEEEECCCCEEEEECCCCCEEEEEeccCCCccCCCCCEEECCCCC
Confidence            567778876 344322223556789999999995 5555311          2211 1111     123567889988 6


Q ss_pred             eEEE----ecC-------------CCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccC------CcEEEEE
Q 038439           66 ELAS----AST-------------DSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSES------NEVYVYH  122 (179)
Q Consensus        66 ~l~~----~~~-------------d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d------~~v~vwd  122 (179)
                      .+++    +..             .+.|..+|..+++.....  .......++|+|+++.++++...      +.|.+|+
T Consensus       144 l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~  221 (305)
T 3dr2_A          144 IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFA  221 (305)
T ss_dssp             EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEE
T ss_pred             EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEE
Confidence            6665    432             245777777666543332  33456789999999987776654      6899999


Q ss_pred             cCCC
Q 038439          123 KEIS  126 (179)
Q Consensus       123 ~~~~  126 (179)
                      +...
T Consensus       222 ~~~~  225 (305)
T 3dr2_A          222 WRDG  225 (305)
T ss_dssp             EETT
T ss_pred             ecCC
Confidence            8754

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.93  E-value=1.8e-07  Score=66.77  Aligned_cols=175  Identities=10%  Similarity=0.080  Sum_probs=106.9

Q ss_pred             CCccEEEEEcCCc----eeEEeec--------CCCceeEEEEcCCCCeEEEEe----------------CCCcee--ee-
Q 038439            2 AYGKVKVWCTRQE----ASVLNID--------MKANICCVKYNPGSSNYIAKY----------------QSTAPC--VH-   50 (179)
Q Consensus         2 ~d~~i~vwd~~~~----~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~----------------~~~~~~--~~-   50 (179)
                      .+++|.++|+.+.    +..+.++        .......+...|+| .++++.                .+.+.+  +. 
T Consensus       104 ~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~  182 (462)
T 2ece_A          104 RSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEI  182 (462)
T ss_dssp             TTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCS
T ss_pred             CCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEcc
Confidence            4678999998755    6666663        12356778889998 444332                112222  11 


Q ss_pred             -ccc-CceeEEEEeeC-CeEEEec-------------------CCCcEEEEecCCCcceeeecCCC--CCeEEEEE--ee
Q 038439           51 -GHK-KAVSYVKFLSN-DELASAS-------------------TDSTLRLWDVKENLPVRTFRGHM--NEKNFVGL--TV  104 (179)
Q Consensus        51 -~~~-~~i~~~~~~~~-~~l~~~~-------------------~d~~v~iwd~~~~~~~~~~~~~~--~~v~~~~~--~~  104 (179)
                       ... .--..+.|+|+ +.++++.                   ....|.+||+.+++.+.++....  .....+.|  +|
T Consensus       183 ~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~P  262 (462)
T 2ece_A          183 DRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDP  262 (462)
T ss_dssp             BCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSST
T ss_pred             CCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECC
Confidence             111 11234778999 7777774                   36899999999988787776531  23455666  99


Q ss_pred             CCCEEEEec------cCCcEEEEEcCCCccc--cccccCCCCCCCCc-------ccCCcceEEEEEEccCCCeEEEEeC-
Q 038439          105 NSEYIACGS------ESNEVYVYHKEISKPV--TWHRFSSPDMDDTD-------EDAGSYFISAVCWKSDSPTMLTANS-  168 (179)
Q Consensus       105 ~~~~~~~~~------~d~~v~vwd~~~~~~~--~~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~l~~~~~-  168 (179)
                      +++++++++      .++.|.+|....++..  +.+...........       ... ...+..+.+++||++|+++.. 
T Consensus       263 dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~-~~~pa~I~lS~DGrfLYVSnrg  341 (462)
T 2ece_A          263 TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV-PPLVTDIDISLDDKFLYLSLWG  341 (462)
T ss_dssp             TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE-CCCCCCEEECTTSCEEEEEETT
T ss_pred             CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC-CCceeEEEECCCCCEEEEEeCC
Confidence            999987776      4568877766543211  11111110000000       000 134677899999999988877 


Q ss_pred             CCcEEEEeec
Q 038439          169 QGTIKVLVLA  178 (179)
Q Consensus       169 dg~i~iwd~~  178 (179)
                      .+.|.+||+.
T Consensus       342 ~d~VavfdV~  351 (462)
T 2ece_A          342 IGEVRQYDIS  351 (462)
T ss_dssp             TTEEEEEECS
T ss_pred             CCEEEEEEec
Confidence            6799999974

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.92  E-value=5.9e-07  Score=64.09  Aligned_cols=172  Identities=10%  Similarity=0.058  Sum_probs=104.7

Q ss_pred             cEEEEEcCCceeEEee----c-CCCceeEEEEcCCCCeEEEEeCCCce----------e-e----e-cccCc--eeEEEE
Q 038439            5 KVKVWCTRQEASVLNI----D-MKANICCVKYNPGSSNYIAKYQSTAP----------C-V----H-GHKKA--VSYVKF   61 (179)
Q Consensus         5 ~i~vwd~~~~~~~~~~----~-~~~~v~~~~~~~~~~~~~~~~~~~~~----------~-~----~-~~~~~--i~~~~~   61 (179)
                      .|.+++..++.....+    . ....+.+++++|++..++++...++.          . +    . ++...  ...++|
T Consensus       195 ~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~  274 (409)
T 3hrp_A          195 TVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIY  274 (409)
T ss_dssp             EEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEE
T ss_pred             eEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEE
Confidence            6777776655433333    2 44668899999954466665421111          1 1    1 11111  128999


Q ss_pred             eeC--CeEEEecCCCcEEEEecCCCcceeeecCC---------------CCCeEEEEEeeCCCEEEEec-cCCcEEEEEc
Q 038439           62 LSN--DELASASTDSTLRLWDVKENLPVRTFRGH---------------MNEKNFVGLTVNSEYIACGS-ESNEVYVYHK  123 (179)
Q Consensus        62 ~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~~~~~-~d~~v~vwd~  123 (179)
                      +|+  .++++-..++.|+.|+....  +..+.++               -.....++++|+|+++++-. .++.|+.||+
T Consensus       275 ~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~  352 (409)
T 3hrp_A          275 YFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDI  352 (409)
T ss_dssp             ETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEET
T ss_pred             eCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEEC
Confidence            995  45556667889999987643  2233222               13478899999999877777 7899999998


Q ss_pred             CCCccccccccCCC-C-CCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          124 EISKPVTWHRFSSP-D-MDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       124 ~~~~~~~~~~~~~~-~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .++........... . .........-.....+++++++.++++-..+++|+.++++
T Consensus       353 ~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          353 LDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             TTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             CCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence            77654322211000 0 0000000002458899999998888888888999988764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.90  E-value=1.2e-06  Score=61.72  Aligned_cols=160  Identities=6%  Similarity=-0.117  Sum_probs=99.9

Q ss_pred             cEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeC---------CCcee--eeccc------------------Cc
Q 038439            5 KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQ---------STAPC--VHGHK------------------KA   55 (179)
Q Consensus         5 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---------~~~~~--~~~~~------------------~~   55 (179)
                      +|.++|..+++.+..+...... .++++|+|+.++++..         ....+  +...+                  ..
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~  126 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPY  126 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCC
Confidence            8899999999988888755555 9999999987777631         01111  11111                  11


Q ss_pred             eeEEEEeeC-CeEEEecC--CCcEEEEecCCCcceee-ecCCCCCeEEEEEeeCC-CEEEEeccCCcEEEEEcCCCcccc
Q 038439           56 VSYVKFLSN-DELASAST--DSTLRLWDVKENLPVRT-FRGHMNEKNFVGLTVNS-EYIACGSESNEVYVYHKEISKPVT  130 (179)
Q Consensus        56 i~~~~~~~~-~~l~~~~~--d~~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~~~~~~~d~~v~vwd~~~~~~~~  130 (179)
                      -..+.++|+ ++|+.++.  +..|.++| .+++.+.. +....    ++.+.|++ +.+++.+.||.+.++|. +++...
T Consensus       127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~  200 (373)
T 2mad_H          127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG  200 (373)
T ss_pred             ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE
Confidence            236889999 77777764  57899999 98888777 54321    24556665 45667778999999999 776653


Q ss_pred             ccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          131 WHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      ........     ... ........+.+++..++..+.++.+.+.|+
T Consensus       201 ~~~~~~~~-----~~~-~p~~~~~~~~~~~~~~~~~~~~~~v~vid~  241 (373)
T 2mad_H          201 AGLVGAML-----TAA-QNLLTQPAQANKSGRIVWPVYSGKILQADI  241 (373)
T ss_pred             EEeccccc-----cCC-cceeecceeEecCCEEEEEcCCceEEEEec
Confidence            22110000     000 111223456666555554456677777775

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.88  E-value=1.5e-07  Score=71.48  Aligned_cols=162  Identities=7%  Similarity=0.104  Sum_probs=95.8

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCCC----------c--ee---------------e--ec-c
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQST----------A--PC---------------V--HG-H   52 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----------~--~~---------------~--~~-~   52 (179)
                      +..|++||+.+++.+...-.......++|+ |++.++.+....          .  .+               +  .. |
T Consensus       154 ~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~  232 (693)
T 3iuj_A          154 WREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQ  232 (693)
T ss_dssp             EEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGG
T ss_pred             eEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCC
Confidence            357999999998865432111124678999 997777765211          0  01               1  11 2


Q ss_pred             cCceeEEEEeeC-CeEEEe-c---CCCcEEEEecCCCc-ceeeecCCCCCeEEEEEeeCCCEEE-EeccC---CcEEEEE
Q 038439           53 KKAVSYVKFLSN-DELASA-S---TDSTLRLWDVKENL-PVRTFRGHMNEKNFVGLTVNSEYIA-CGSES---NEVYVYH  122 (179)
Q Consensus        53 ~~~i~~~~~~~~-~~l~~~-~---~d~~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~d---~~v~vwd  122 (179)
                      ...+..+.|+|+ .+|+.. +   ....|.++|+.++. ....+..+....... ++++|..|+ ....+   +.|..+|
T Consensus       233 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d  311 (693)
T 3iuj_A          233 HHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVD  311 (693)
T ss_dssp             CCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEE
T ss_pred             CeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEe
Confidence            334678899999 665433 2   23589999997763 345555555555444 667666554 44333   6799999


Q ss_pred             cCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCC---cEEEEeec
Q 038439          123 KEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG---TIKVLVLA  178 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~  178 (179)
                      +.++.......+..+          ...+.  .|+++++.|+....++   .|++||+.
T Consensus       312 ~~~~~~~~~~~l~~~----------~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~  358 (693)
T 3iuj_A          312 AANPGPAHWRDLIPE----------RQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE  358 (693)
T ss_dssp             TTSCCGGGCEEEECC----------CSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred             CCCCCccccEEEecC----------CCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence            987654111111111          22233  7888898887766543   67888763

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.87  E-value=2e-06  Score=56.66  Aligned_cols=161  Identities=11%  Similarity=0.087  Sum_probs=101.6

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-CeEEE
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-DELAS   69 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~   69 (179)
                      ..|+.+|+.+++.+..+............+.+..++...           .+.+.+  +.-.... ..+  .++ ..|+.
T Consensus        43 S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wgl--t~dg~~L~v  119 (243)
T 3mbr_X           43 SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WAL--TSDDSHLYM  119 (243)
T ss_dssp             CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC-CEE--EECSSCEEE
T ss_pred             ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEE--eeCCCEEEE
Confidence            489999999999999887665554443444444665555           233333  2211111 233  456 55655


Q ss_pred             ecCCCcEEEEecCCCcceeeecCCC-----CCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCc-
Q 038439           70 ASTDSTLRLWDVKENLPVRTFRGHM-----NEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTD-  143 (179)
Q Consensus        70 ~~~d~~v~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~-  143 (179)
                      +..++.|.++|..+.+.+..+.-..     ..++.+.+. +|+.++..-.+..|.+.|.++++.+..+.+..-...... 
T Consensus       120 Sdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~  198 (243)
T 3mbr_X          120 SDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADAL  198 (243)
T ss_dssp             ECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSC
T ss_pred             ECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccc
Confidence            5668899999999988877775421     234556654 677666655688999999999998777664421110000 


Q ss_pred             ccCCcceEEEEEEccCCCeEEEEeC
Q 038439          144 EDAGSYFISAVCWKSDSPTMLTANS  168 (179)
Q Consensus       144 ~~~~~~~i~~~~~~~~~~~l~~~~~  168 (179)
                      ........+.++++|+++.|++.+.
T Consensus       199 ~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          199 TDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             CCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             cCCcCCceEEEEEcCCCCEEEEECC
Confidence            0011346889999998887777665

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.85  E-value=5.3e-07  Score=60.02  Aligned_cols=163  Identities=9%  Similarity=-0.045  Sum_probs=100.4

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-Ce
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-DE   66 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~~   66 (179)
                      |.+|.|+++|+++++.+..+ ...........+++..++.+.           .+.+.+  +.-. ..-..+  .++ ..
T Consensus        72 G~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-~eGwGL--t~Dg~~  147 (268)
T 3nok_A           72 GHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYS-GEGWGL--CYWNGK  147 (268)
T ss_dssp             TTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECS-SCCCCE--EEETTE
T ss_pred             CCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCC-CceeEE--ecCCCE
Confidence            45778999999999988877 555554433333444555554           223333  2211 111223  355 66


Q ss_pred             EEEecCCCcEEEEecCCCcceeeecCCC-----CCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCC
Q 038439           67 LASASTDSTLRLWDVKENLPVRTFRGHM-----NEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDD  141 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~  141 (179)
                      |+.+..++.|.++|..+.+.+.++.-..     ..++.+.|. +|+.++..-.++.|.+.|.++++.+..+.+..-....
T Consensus       148 L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~  226 (268)
T 3nok_A          148 LVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAV  226 (268)
T ss_dssp             EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHH
T ss_pred             EEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccc
Confidence            6666678899999999988887765421     234567776 7866666656889999999999887666543100000


Q ss_pred             C-cccCCcceEEEEEEccCCCeEEEEeC
Q 038439          142 T-DEDAGSYFISAVCWKSDSPTMLTANS  168 (179)
Q Consensus       142 ~-~~~~~~~~i~~~~~~~~~~~l~~~~~  168 (179)
                      . .........+.++++|+++.|++.+.
T Consensus       227 ~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          227 AGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             TTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             cccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            0 00001346789999998777766654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.85  E-value=1.3e-07  Score=71.65  Aligned_cols=101  Identities=5%  Similarity=-0.035  Sum_probs=73.0

Q ss_pred             eEEEecCCCcEEEEecCCCcceeeecCCCC-----------Ce------------------------EEEEEeeCCCEEE
Q 038439           66 ELASASTDSTLRLWDVKENLPVRTFRGHMN-----------EK------------------------NFVGLTVNSEYIA  110 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~-----------~v------------------------~~~~~~~~~~~~~  110 (179)
                      .++.++.+|.+.++|..+++.+..+.....           .+                        ..++++|+..+++
T Consensus       329 ~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~y  408 (677)
T 1kb0_A          329 VILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVY  408 (677)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEE
T ss_pred             EEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEE
Confidence            578889999999999999988766542110           01                        1468899888877


Q ss_pred             Eecc-------------------------------------------CCcEEEEEcCCCccccccccCCCCCCCCcccCC
Q 038439          111 CGSE-------------------------------------------SNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAG  147 (179)
Q Consensus       111 ~~~~-------------------------------------------d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  147 (179)
                      +...                                           .+.|..||+.+++.+......            
T Consensus       409 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~------------  476 (677)
T 1kb0_A          409 LPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV------------  476 (677)
T ss_dssp             EEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES------------
T ss_pred             EeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC------------
Confidence            6532                                           267999999999887666542            


Q ss_pred             cceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          148 SYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       148 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                       ..+....+...+..++.++.||.+++||+++
T Consensus       477 -~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t  507 (677)
T 1kb0_A          477 -SPWNGGTLTTAGNVVFQGTADGRLVAYHAAT  507 (677)
T ss_dssp             -SSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred             -CCCcCcceEeCCCEEEEECCCCcEEEEECCC
Confidence             2233344556788899999999999999864

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.85  E-value=9.2e-07  Score=59.24  Aligned_cols=154  Identities=8%  Similarity=0.024  Sum_probs=97.4

Q ss_pred             ceeEEeecCCCc--eeEEEEcCCCCeEEEE-e------------CCCcee--e--ecccCceeEEEEeeCCeEEEecCCC
Q 038439           14 EASVLNIDMKAN--ICCVKYNPGSSNYIAK-Y------------QSTAPC--V--HGHKKAVSYVKFLSNDELASASTDS   74 (179)
Q Consensus        14 ~~~~~~~~~~~~--v~~~~~~~~~~~~~~~-~------------~~~~~~--~--~~~~~~i~~~~~~~~~~l~~~~~d~   74 (179)
                      .+.+.++.+...  ...++|+|++ .++++ |            .+++.+  +  ..+ .....+.+..+..+++.-.++
T Consensus         9 ~~vv~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-~fgeGi~~~g~~lyv~t~~~~   86 (266)
T 2iwa_A            9 VEVLNEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-YFGEGLTLLNEKLYQVVWLKN   86 (266)
T ss_dssp             EEEEEEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEETTCS
T ss_pred             ceEEEEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-cceEEEEEeCCEEEEEEecCC
Confidence            456777777654  6899999987 45544 3            222222  1  111 111234443334455556688


Q ss_pred             cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEE
Q 038439           75 TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAV  154 (179)
Q Consensus        75 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  154 (179)
                      .+.++|..+.+.+.++.....  ....+++||+.++++..++.|.++|..+.+.+.........       ..-..++.+
T Consensus        87 ~v~viD~~t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~-------~p~~~~nel  157 (266)
T 2iwa_A           87 IGFIYDRRTLSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNG-------HRVIRLNEL  157 (266)
T ss_dssp             EEEEEETTTTEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETT-------EECCCEEEE
T ss_pred             EEEEEECCCCcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCC-------cccccceeE
Confidence            999999999988888864311  22446778887777777899999999998877766653210       001236778


Q ss_pred             EEccCCCeEEEEeCCCcEEEEeecC
Q 038439          155 CWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       155 ~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      .|. ++...+....++.|.+.|.++
T Consensus       158 e~~-dg~lyvn~~~~~~V~vID~~t  181 (266)
T 2iwa_A          158 EYI-NGEVWANIWQTDCIARISAKD  181 (266)
T ss_dssp             EEE-TTEEEEEETTSSEEEEEETTT
T ss_pred             EEE-CCEEEEecCCCCeEEEEECCC
Confidence            887 675555554578899888754

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.79  E-value=1.9e-06  Score=65.46  Aligned_cols=160  Identities=14%  Similarity=0.042  Sum_probs=96.8

Q ss_pred             ccEEEEEcCCcee--EEeecC----CCceeEEEEcCCCCeEEEEe-C--CCcee--------------eecccCceeEEE
Q 038439            4 GKVKVWCTRQEAS--VLNIDM----KANICCVKYNPGSSNYIAKY-Q--STAPC--------------VHGHKKAVSYVK   60 (179)
Q Consensus         4 ~~i~vwd~~~~~~--~~~~~~----~~~v~~~~~~~~~~~~~~~~-~--~~~~~--------------~~~~~~~i~~~~   60 (179)
                      ..|++|++.+...  ...+..    .....++.|+|+|+.+++.. .  ....+              +..+....... 
T Consensus       208 ~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-  286 (693)
T 3iuj_A          208 HKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-  286 (693)
T ss_dssp             CEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-
T ss_pred             cEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-
Confidence            3588898876542  223332    33578899999997776554 1  11111              33333333343 


Q ss_pred             EeeC-CeE-EEecCC---CcEEEEecCCCcc--eeeecCCCCCeEEEEEeeCCCEEEEecc-CC--cEEEEEcCCCcccc
Q 038439           61 FLSN-DEL-ASASTD---STLRLWDVKENLP--VRTFRGHMNEKNFVGLTVNSEYIACGSE-SN--EVYVYHKEISKPVT  130 (179)
Q Consensus        61 ~~~~-~~l-~~~~~d---~~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~--~v~vwd~~~~~~~~  130 (179)
                      ++++ +.| +....+   +.|..+|+.++..  .+.+..+...+.  .|+++++.|+.... ++  .|++||+..+. ..
T Consensus       287 ~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~  363 (693)
T 3iuj_A          287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VR  363 (693)
T ss_dssp             EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-EE
T ss_pred             EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-eE
Confidence            5555 444 444433   5789999987654  345555555554  89999988776655 43  68899987543 33


Q ss_pred             ccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCC----CcEEEEeec
Q 038439          131 WHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQ----GTIKVLVLA  178 (179)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd~~  178 (179)
                      .+.+..           ...+..+.++++++.++....+    +.+..||+.
T Consensus       364 ~l~~p~-----------~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~  404 (693)
T 3iuj_A          364 EVALPG-----------LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPK  404 (693)
T ss_dssp             EECCSS-----------SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             EeecCC-----------CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECC
Confidence            332211           3457777888888877666554    788888864

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.73  E-value=3.3e-07  Score=63.76  Aligned_cols=157  Identities=8%  Similarity=-0.063  Sum_probs=96.4

Q ss_pred             CccEEEEEcCCceeEEeecCC-------CceeEEEEcCCCCeEEEEeC--------------CCcee--eecc-------
Q 038439            3 YGKVKVWCTRQEASVLNIDMK-------ANICCVKYNPGSSNYIAKYQ--------------STAPC--VHGH-------   52 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~--------------~~~~~--~~~~-------   52 (179)
                      ++.|.+||+.+++.+..+...       ..+..++++|++..++++..              .++..  +.+|       
T Consensus        92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~  171 (343)
T 2qe8_A           92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPED  171 (343)
T ss_dssp             CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCS
T ss_pred             CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccc
Confidence            468899999988877666422       34689999986546655521              11111  1111       


Q ss_pred             ----------------------cCceeEEEEeeC-CeEEEecCCC-cEEEEecC---CCc-----cee--eecCCCCCeE
Q 038439           53 ----------------------KKAVSYVKFLSN-DELASASTDS-TLRLWDVK---ENL-----PVR--TFRGHMNEKN   98 (179)
Q Consensus        53 ----------------------~~~i~~~~~~~~-~~l~~~~~d~-~v~iwd~~---~~~-----~~~--~~~~~~~~v~   98 (179)
                                            ...+..++++|+ +.|+.+...+ .+..++..   .+.     ...  ...++.....
T Consensus       172 ~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pd  251 (343)
T 2qe8_A          172 IDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICD  251 (343)
T ss_dssp             CCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCS
T ss_pred             cceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCc
Confidence                                  012577999999 6777776655 44444421   111     000  1112233456


Q ss_pred             EEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCC
Q 038439           99 FVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG  170 (179)
Q Consensus        99 ~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  170 (179)
                      .++++++|.++++...++.|.+||..+++........           ....+..+++.+++.++++.+..+
T Consensus       252 gia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-----------~~~~p~~va~~~~g~l~v~~~~~~  312 (343)
T 2qe8_A          252 GISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-----------KLSWTDSFNFGSDGYLYFDCNQLH  312 (343)
T ss_dssp             CEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-----------GGSCEEEEEECTTSCEEEEECCGG
T ss_pred             eEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-----------ceecCCeeEECCCCcEEEEeCccc
Confidence            7899999999999888999999998555432222110           034588999999988877776443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.71  E-value=9.2e-06  Score=56.46  Aligned_cols=153  Identities=9%  Similarity=0.033  Sum_probs=92.0

Q ss_pred             CceeEEEEcCCCCeEEEEeC--CC-cee--ee---------------cccCceeEEEEeeC-CeEEEecC-----CCcEE
Q 038439           24 ANICCVKYNPGSSNYIAKYQ--ST-APC--VH---------------GHKKAVSYVKFLSN-DELASAST-----DSTLR   77 (179)
Q Consensus        24 ~~v~~~~~~~~~~~~~~~~~--~~-~~~--~~---------------~~~~~i~~~~~~~~-~~l~~~~~-----d~~v~   77 (179)
                      ..+..++++|+|..+++..+  .+ ..+  +.               .+...+..+++.++ .++++-..     +..|.
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~   96 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV   96 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence            67899999999954444321  11 011  11               13356788999998 44444333     57899


Q ss_pred             EEecCCCcceeeecCC------CCCeEEEEEeeCCCE-EEEec---cCCcEEEEEcCCCccccccccC-C--C-CCCCCc
Q 038439           78 LWDVKENLPVRTFRGH------MNEKNFVGLTVNSEY-IACGS---ESNEVYVYHKEISKPVTWHRFS-S--P-DMDDTD  143 (179)
Q Consensus        78 iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~-~~~~~---~d~~v~vwd~~~~~~~~~~~~~-~--~-~~~~~~  143 (179)
                      +||+.+++.+..+...      ...+..+++++++.. +++..   .++.|.+||+.+++........ .  + ......
T Consensus        97 ~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~  176 (343)
T 2qe8_A           97 AWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVI  176 (343)
T ss_dssp             EEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEE
T ss_pred             EEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeE
Confidence            9999988866665432      234678999986544 45544   5789999999877654332110 0  0 000000


Q ss_pred             cc--------C-----CcceEEEEEEccCCCeEEEEeCCC-cEEEEe
Q 038439          144 ED--------A-----GSYFISAVCWKSDSPTMLTANSQG-TIKVLV  176 (179)
Q Consensus       144 ~~--------~-----~~~~i~~~~~~~~~~~l~~~~~dg-~i~iwd  176 (179)
                      .+        .     -...+..++|+|+++.|+.+..++ .+..++
T Consensus       177 ~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~  223 (343)
T 2qe8_A          177 DGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK  223 (343)
T ss_dssp             TTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred             CCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence            00        0     012468899999999888887765 444443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.66  E-value=4.4e-06  Score=63.48  Aligned_cols=101  Identities=5%  Similarity=0.022  Sum_probs=70.6

Q ss_pred             eEEEecCCCcEEEEecCCCcceeeecCCC-C--------------------------------------CeEEEEEeeCC
Q 038439           66 ELASASTDSTLRLWDVKENLPVRTFRGHM-N--------------------------------------EKNFVGLTVNS  106 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-~--------------------------------------~v~~~~~~~~~  106 (179)
                      .++.++.+|.+.++|..+++.+....... .                                      .-..++++|+.
T Consensus       321 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~  400 (689)
T 1yiq_A          321 VLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT  400 (689)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred             EEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC
Confidence            67888999999999999998774322110 0                                      00126788887


Q ss_pred             CEEEEecc---------------------------------------------CCcEEEEEcCCCccccccccCCCCCCC
Q 038439          107 EYIACGSE---------------------------------------------SNEVYVYHKEISKPVTWHRFSSPDMDD  141 (179)
Q Consensus       107 ~~~~~~~~---------------------------------------------d~~v~vwd~~~~~~~~~~~~~~~~~~~  141 (179)
                      .++++...                                             +|.|..||+.+++.+.......     
T Consensus       401 ~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-----  475 (689)
T 1yiq_A          401 GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-----  475 (689)
T ss_dssp             TEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-----
T ss_pred             CEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-----
Confidence            77776421                                             3779999999998876655421     


Q ss_pred             CcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          142 TDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       142 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                              ......+...+..++.++.||.++.||.++
T Consensus       476 --------~~~~g~~~tagglvf~gt~dg~l~a~D~~t  505 (689)
T 1yiq_A          476 --------IFNGGTLSTAGNLVFEGSADGRVIAYAADT  505 (689)
T ss_dssp             --------SCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred             --------CccCccceECCCEEEEECCCCcEEEEECCC
Confidence                    122234556788899999999999999764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.65  E-value=1.7e-05  Score=56.80  Aligned_cols=109  Identities=8%  Similarity=-0.028  Sum_probs=78.0

Q ss_pred             EEEEeeCCeEEEecCC------CcEEEEecCCCcceeeecCCC---CCeEEEEEeeCCCEEEEec---------------
Q 038439           58 YVKFLSNDELASASTD------STLRLWDVKENLPVRTFRGHM---NEKNFVGLTVNSEYIACGS---------------  113 (179)
Q Consensus        58 ~~~~~~~~~l~~~~~d------~~v~iwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~---------------  113 (179)
                      .+...|++.++++..+      +.+.+.|..+.+.+.++....   ..-..+.|+|+++.+++..               
T Consensus       142 ~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~  221 (462)
T 2ece_A          142 TVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEH  221 (462)
T ss_dssp             EEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTT
T ss_pred             ceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhh
Confidence            3456677766665554      689999999999888886332   2244578899999888874               


Q ss_pred             ----cCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEE--ccCCCeEEEEeC------CCcEEEEe
Q 038439          114 ----ESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCW--KSDSPTMLTANS------QGTIKVLV  176 (179)
Q Consensus       114 ----~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~------dg~i~iwd  176 (179)
                          ....|.+||+.+++.+..+.....          ......+.|  +|+++++++++.      +++|.+|.
T Consensus       222 ~~~~~~d~V~v~D~~~~k~~~tI~vg~~----------g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~  286 (462)
T 2ece_A          222 LKDRYGNRIHFWDLRKRKRIHSLTLGEE----------NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWF  286 (462)
T ss_dssp             HHHHSCCEEEEEETTTTEEEEEEESCTT----------EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEE
T ss_pred             hhhccCCEEEEEECCCCcEeeEEecCCC----------CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEE
Confidence                368899999998877776665311          344556656  999999888774      55776654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.62  E-value=2.8e-05  Score=51.98  Aligned_cols=164  Identities=6%  Similarity=-0.072  Sum_probs=96.6

Q ss_pred             CccEEEEEcCCceeE-----Eeec-CCCceeEEEEcCCCCeEEEEeCCCcee-------------eecccCceeEEEEee
Q 038439            3 YGKVKVWCTRQEASV-----LNID-MKANICCVKYNPGSSNYIAKYQSTAPC-------------VHGHKKAVSYVKFLS   63 (179)
Q Consensus         3 d~~i~vwd~~~~~~~-----~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~~~~~~~   63 (179)
                      .+.|+.+++......     ..+. ....+..++|+|++..++.+......+             ..........+++.+
T Consensus         9 ~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~   88 (267)
T 1npe_A            9 TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDH   88 (267)
T ss_dssp             EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEET
T ss_pred             CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEe
Confidence            356777777654321     1111 124578999999776777665111111             222224567889998


Q ss_pred             C-CeE-EEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc---CCcEEEEEcCCCccccccccCCCC
Q 038439           64 N-DEL-ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE---SNEVYVYHKEISKPVTWHRFSSPD  138 (179)
Q Consensus        64 ~-~~l-~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---d~~v~vwd~~~~~~~~~~~~~~~~  138 (179)
                      + +.+ ++-...+.|.++++..................++++|++..++.+..   .+.|..+++..... ..+... . 
T Consensus        89 ~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~~~~~~-~-  165 (267)
T 1npe_A           89 LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILAQD-N-  165 (267)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEECT-T-
T ss_pred             cCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-EEEEEC-C-
Confidence            6 554 45456778999998754322222222345789999997665554443   36788888764322 111100 0 


Q ss_pred             CCCCcccCCcceEEEEEEccCCCeEEEEe-CCCcEEEEeec
Q 038439          139 MDDTDEDAGSYFISAVCWKSDSPTMLTAN-SQGTIKVLVLA  178 (179)
Q Consensus       139 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~  178 (179)
                               ......+++++++..|+.+. ..+.|.++|+.
T Consensus       166 ---------~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~  197 (267)
T 1npe_A          166 ---------LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA  197 (267)
T ss_dssp             ---------CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             ---------CCCCcEEEEcCCCCEEEEEECCCCEEEEEecC
Confidence                     33578899999877665555 46788888864

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.60  E-value=9.9e-08  Score=68.19  Aligned_cols=99  Identities=11%  Similarity=0.028  Sum_probs=74.5

Q ss_pred             CcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEec----------cCCcEEEEEcCCCccccccccCCCCCCCCc
Q 038439           74 STLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGS----------ESNEVYVYHKEISKPVTWHRFSSPDMDDTD  143 (179)
Q Consensus        74 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~  143 (179)
                      +.|.++|..+.+.+.++.....+  .+.++|||++++++.          .++.|.++|..+.+.+..+........   
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~---  173 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRF---  173 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC---
T ss_pred             CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccc---
Confidence            69999999999999888755554  799999999988776          367899999999988777654311000   


Q ss_pred             ccCCcceEEEEEEccCCCeEEEEeC--CCcEEEEeecC
Q 038439          144 EDAGSYFISAVCWKSDSPTMLTANS--QGTIKVLVLAA  179 (179)
Q Consensus       144 ~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~  179 (179)
                       .. ......+.++|||++++++..  ++.|.+.|+.+
T Consensus       174 -~~-g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t  209 (426)
T 3c75_H          174 -LV-GTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEG  209 (426)
T ss_dssp             -CB-SCCGGGSEECTTSSEEEEEECSSSCEEEEEETTT
T ss_pred             -cc-CCCcceEEEcCCCCEEEEEecCCCCeEEEEECCC
Confidence             00 122356889999999999874  57899999764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.60  E-value=8e-08  Score=67.49  Aligned_cols=106  Identities=8%  Similarity=-0.082  Sum_probs=76.6

Q ss_pred             eEEEecCCC----cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEec----------cCCcEEEEEcCCCccccc
Q 038439           66 ELASASTDS----TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGS----------ESNEVYVYHKEISKPVTW  131 (179)
Q Consensus        66 ~l~~~~~d~----~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------~d~~v~vwd~~~~~~~~~  131 (179)
                      .+++...++    .|.+.|..+++.+.++.....+  .+.++||+++++++.          .++.|.+||+.+++.+..
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~  111 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD  111 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE
T ss_pred             EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEE
Confidence            344444444    7889999999999888755555  799999999988876          368899999999998877


Q ss_pred             cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC--CCcEEE--Eeec
Q 038439          132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS--QGTIKV--LVLA  178 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i--wd~~  178 (179)
                      +.......  ..  . ......+.++|||++++++..  +..+.+  +|+.
T Consensus       112 I~v~~~~~--~~--~-g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~  157 (368)
T 1mda_H          112 IELPDAPR--FS--V-GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS  157 (368)
T ss_dssp             EEETTSCS--CC--B-SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTE
T ss_pred             EECCCccc--cc--c-CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchh
Confidence            76531100  00  0 123456889999999998875  456888  8764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.58  E-value=3.5e-06  Score=62.24  Aligned_cols=122  Identities=9%  Similarity=-0.034  Sum_probs=85.6

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeC--------------------------------CC-----
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQ--------------------------------ST-----   45 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--------------------------------~~-----   45 (179)
                      ++.+.+.|..+.+.+.++...+....++++|+|..++++..                                .+     
T Consensus       174 ~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i  253 (595)
T 1fwx_A          174 VNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  253 (595)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             CceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence            56899999999999988886557788999999988877760                                00     


Q ss_pred             --ceeeeccc-------------CceeEEEEeeC-CeE-EEecCCCcEEEEecCCCc------------ceeeecCCCCC
Q 038439           46 --APCVHGHK-------------KAVSYVKFLSN-DEL-ASASTDSTLRLWDVKENL------------PVRTFRGHMNE   96 (179)
Q Consensus        46 --~~~~~~~~-------------~~i~~~~~~~~-~~l-~~~~~d~~v~iwd~~~~~------------~~~~~~~~~~~   96 (179)
                        -.++...+             ....++.++|| .++ +++..+.+|.++|+.+.+            ....+. -...
T Consensus       254 ~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~g  332 (595)
T 1fwx_A          254 NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLG  332 (595)
T ss_dssp             TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSC
T ss_pred             CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCC
Confidence              00122111             12346889999 554 445568899999998642            223333 2345


Q ss_pred             eEEEEEeeCCCEEEEeccCCcEEEEEcCC
Q 038439           97 KNFVGLTVNSEYIACGSESNEVYVYHKEI  125 (179)
Q Consensus        97 v~~~~~~~~~~~~~~~~~d~~v~vwd~~~  125 (179)
                      ...++|+|+|..+++...|++|.+||+..
T Consensus       333 P~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          333 PLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             cceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            78899999994455667799999999987

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.53  E-value=2.1e-05  Score=52.32  Aligned_cols=152  Identities=13%  Similarity=0.081  Sum_probs=92.0

Q ss_pred             eeEEeecCCCc--eeEEEEcCCCCeEEEEeC------------CCcee--eecccCceeE--EEEeeCCeEEEecCCCcE
Q 038439           15 ASVLNIDMKAN--ICCVKYNPGSSNYIAKYQ------------STAPC--VHGHKKAVSY--VKFLSNDELASASTDSTL   76 (179)
Q Consensus        15 ~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~------------~~~~~--~~~~~~~i~~--~~~~~~~~l~~~~~d~~v   76 (179)
                      +.+.++.|...  ...+.|+ ++..+.++|.            +++.+  +.- ......  +....+..+...-.++.+
T Consensus        32 ~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l-~~~~FgeGit~~g~~ly~ltw~~~~v  109 (262)
T 3nol_A           32 QIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL-GKRYFGEGISDWKDKIVGLTWKNGLG  109 (262)
T ss_dssp             EEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC-CTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred             EEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec-CCccceeEEEEeCCEEEEEEeeCCEE
Confidence            45566777654  4889998 5644455552            22222  111 112222  333322344444568899


Q ss_pred             EEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEE
Q 038439           77 RLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCW  156 (179)
Q Consensus        77 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  156 (179)
                      .++|..+.+.+.++....   ....+++++..++....++.|.++|..+.+.+.........       ..-..++.+.|
T Consensus       110 ~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g-------~~~~~lNELe~  179 (262)
T 3nol_A          110 FVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHG-------EELPELNELEW  179 (262)
T ss_dssp             EEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETT-------EECCCEEEEEE
T ss_pred             EEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCC-------ccccccceeEE
Confidence            999999999998887533   22345567887777776888999999998887776653210       00123556777


Q ss_pred             ccCCCeEEEEeCCCcEEEEeecC
Q 038439          157 KSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       157 ~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      . +|+..+..-.++.|.+.|.++
T Consensus       180 ~-~G~lyan~w~~~~I~vIDp~t  201 (262)
T 3nol_A          180 V-DGEIFANVWQTNKIVRIDPET  201 (262)
T ss_dssp             E-TTEEEEEETTSSEEEEECTTT
T ss_pred             E-CCEEEEEEccCCeEEEEECCC
Confidence            5 666554444577888877653

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.51  E-value=5.1e-06  Score=57.00  Aligned_cols=158  Identities=9%  Similarity=-0.000  Sum_probs=95.4

Q ss_pred             CCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-------CCCcee--eecccCceeEEEEeeCCeEEEec
Q 038439            2 AYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-------QSTAPC--VHGHKKAVSYVKFLSNDELASAS   71 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-------~~~~~~--~~~~~~~i~~~~~~~~~~l~~~~   71 (179)
                      .++.|..+|.. ++.+..+. ....+.++...+++. ++++.       ..++.+  .......+.++...+++.+..++
T Consensus       155 ~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t  232 (330)
T 3hxj_A          155 NDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGSDKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYVTS  232 (330)
T ss_dssp             TTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEESSSEEEECTTSCEEEEECCSSCCCSCCEECTTSCEEEEE
T ss_pred             CCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEeCEEEEECCCCcEEEEEccCCcceeceEECCCCeEEEEc
Confidence            35778888877 66655554 234466677767774 44432       122222  22223446666666665677777


Q ss_pred             CCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceE
Q 038439           72 TDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFI  151 (179)
Q Consensus        72 ~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  151 (179)
                      .++.+..+|. +++.+..+......+..+...+++ .+..++.++.|..+|. +++....+...            ...+
T Consensus       233 ~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~------------~~~~  297 (330)
T 3hxj_A          233 LDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETG------------SWII  297 (330)
T ss_dssp             TTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECS------------SCCC
T ss_pred             CCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcC------------Cccc
Confidence            7788888874 455555555443334445555555 4666777888999996 56655444332            2334


Q ss_pred             EEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          152 SAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       152 ~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      .++...++++ |..++.+|.+++...
T Consensus       298 ~~~~~d~~g~-l~~gt~~G~~~~~~~  322 (330)
T 3hxj_A          298 ATPVIDENGT-IYFGTRNGKFYALFN  322 (330)
T ss_dssp             SCCEECTTCC-EEEECTTSCEEEEEC
T ss_pred             cceEEcCCCE-EEEEcCCCeEEEEec
Confidence            5566666665 677899999988764

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.49  E-value=2.6e-05  Score=54.70  Aligned_cols=129  Identities=12%  Similarity=0.041  Sum_probs=75.4

Q ss_pred             CCccEEEEEcCCceeEEeecC----------CCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEE
Q 038439            2 AYGKVKVWCTRQEASVLNIDM----------KANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYV   59 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~   59 (179)
                      .++.|..+|..+++.+.....          ...+.+.-...++ .+++..          .+++.+  ...........
T Consensus        61 ~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p  139 (376)
T 3q7m_A           61 RAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGG-HVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRP  139 (376)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETT-EEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred             CCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCC-EEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCC
Confidence            467899999999988766653          2223222222233 455444          233333  11111111111


Q ss_pred             EEeeCCeEEEecCCCcEEEEecCCCcceeeecCCCCCe-----EEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccccc
Q 038439           60 KFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEK-----NFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF  134 (179)
Q Consensus        60 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~  134 (179)
                      . ..++.++.++.++.+..+|..+++.+..+.......     .....  .+..++++..++.+..+|.++++.+.....
T Consensus       140 ~-~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~  216 (376)
T 3q7m_A          140 V-VSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRI  216 (376)
T ss_dssp             E-EETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEEC
T ss_pred             E-EECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence            1 123678888889999999999998877665432111     11112  245677888899999999999987765543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.48  E-value=1.5e-05  Score=55.99  Aligned_cols=157  Identities=10%  Similarity=0.037  Sum_probs=92.0

Q ss_pred             CCccEEEEEcCCceeEEeecCCCc-----------e-eEEEEcCCCCeEEEEe----------CCCceeeecccCceeEE
Q 038439            2 AYGKVKVWCTRQEASVLNIDMKAN-----------I-CCVKYNPGSSNYIAKY----------QSTAPCVHGHKKAVSYV   59 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~~~~-----------v-~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~i~~~   59 (179)
                      .++.|..+|..+++.+.......+           + ...... ++ .+++.+          .+++.+..........+
T Consensus       196 ~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~-~~-~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~  273 (376)
T 3q7m_A          196 DNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV-NG-VVFALAYNGNLTALDLRSGQIMWKRELGSVNDF  273 (376)
T ss_dssp             TTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE-TT-EEEEECTTSCEEEEETTTCCEEEEECCCCEEEE
T ss_pred             CCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE-CC-EEEEEecCcEEEEEECCCCcEEeeccCCCCCCc
Confidence            468899999999888766643211           1 011111 22 444443          23333311111222333


Q ss_pred             EEeeCCeEEEecCCCcEEEEecCCCcceeeecCC-CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCC
Q 038439           60 KFLSNDELASASTDSTLRLWDVKENLPVRTFRGH-MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPD  138 (179)
Q Consensus        60 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~  138 (179)
                      .. .++.++.++.++.+..+|..+++.+...... .........  .+..+++++.+|.+.++|.++++.+........ 
T Consensus       274 ~~-~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~-  349 (376)
T 3q7m_A          274 IV-DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSS-  349 (376)
T ss_dssp             EE-ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTT-
T ss_pred             eE-ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCC-
Confidence            22 2367788888999999999999877665421 112222222  356788888899999999999988766554211 


Q ss_pred             CCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439          139 MDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       139 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  176 (179)
                                ........  .+..|+.++.+|.|+.|+
T Consensus       350 ----------~~~~~~~~--~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          350 ----------GFQTEPVA--ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             ----------CBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred             ----------cceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence                      00111111  256788899999999987

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.48  E-value=2.1e-08  Score=70.58  Aligned_cols=66  Identities=12%  Similarity=0.045  Sum_probs=45.5

Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccc
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWH  132 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~  132 (179)
                      +.+++++.|+.|..||..+++.+..+..  ..+.+..+..++..+++++.|+.|+.||.++++.+..+
T Consensus        10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~   75 (369)
T 2hz6_A           10 TLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKL   75 (369)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEEC
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeee
Confidence            7889999999999999999998887765  44545555667878888889999999999888765443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.47  E-value=9.5e-05  Score=50.85  Aligned_cols=165  Identities=9%  Similarity=-0.080  Sum_probs=102.7

Q ss_pred             CCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCCCcee-----------------eecccCceeEEEEeeC
Q 038439            2 AYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPC-----------------VHGHKKAVSYVKFLSN   64 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~i~~~~~~~~   64 (179)
                      ..+.|+..|+.+.+....+.....+..++|++.+..++.+......+                 +.........+++.+.
T Consensus         8 ~~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~   87 (316)
T 1ijq_A            8 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI   87 (316)
T ss_dssp             CBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             CCCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence            34678889988877666666667789999998776777665111111                 2112234467888765


Q ss_pred             -C-eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc-C-CcEEEEEcCCCccccccccCCCCCC
Q 038439           65 -D-ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE-S-NEVYVYHKEISKPVTWHRFSSPDMD  140 (179)
Q Consensus        65 -~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d-~~v~vwd~~~~~~~~~~~~~~~~~~  140 (179)
                       + .+++-...+.|.+.++........+.........+++.|.+..++.... . +.|...++..... ..+... .   
T Consensus        88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-~~~~~~-~---  162 (316)
T 1ijq_A           88 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTE-N---  162 (316)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEECS-S---
T ss_pred             CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-EEEEEC-C---
Confidence             4 4455566788999998754333333333456789999997665554443 2 6788888754322 111110 0   


Q ss_pred             CCcccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEeec
Q 038439          141 DTDEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVLA  178 (179)
Q Consensus       141 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~  178 (179)
                             -.....+++++++..|+.+.. .+.|..+|+.
T Consensus       163 -------~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d  194 (316)
T 1ijq_A          163 -------IQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  194 (316)
T ss_dssp             -------CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             -------CCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence                   335788999987776666554 5678888763

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.46  E-value=8.1e-05  Score=49.71  Aligned_cols=160  Identities=6%  Similarity=-0.090  Sum_probs=92.7

Q ss_pred             CccEEEEEcCCceeEEeecC-CCceeEEEEcCCCCeEEEEeCCCcee-------------eecccCceeEEEEeeC-CeE
Q 038439            3 YGKVKVWCTRQEASVLNIDM-KANICCVKYNPGSSNYIAKYQSTAPC-------------VHGHKKAVSYVKFLSN-DEL   67 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~~~~~~~~-~~l   67 (179)
                      ++.|..++.........+.. ......+++.|++..++++......+             ..........+++.|+ +.+
T Consensus        57 ~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~l  136 (267)
T 1npe_A           57 EPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNL  136 (267)
T ss_dssp             TTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEE
T ss_pred             CCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEE
Confidence            45667777665443333332 25688999999765676665111111             2112234578899996 665


Q ss_pred             EEecC---CCcEEEEecCCCcceeee-cCCCCCeEEEEEeeCCCEEE-EeccCCcEEEEEcCCCccccccccCCCCCCCC
Q 038439           68 ASAST---DSTLRLWDVKENLPVRTF-RGHMNEKNFVGLTVNSEYIA-CGSESNEVYVYHKEISKPVTWHRFSSPDMDDT  142 (179)
Q Consensus        68 ~~~~~---d~~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~-~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~  142 (179)
                      +.+..   .+.|..+++.... ...+ .........++++|++..++ +-...+.|.++|+...........        
T Consensus       137 yv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~--------  207 (267)
T 1npe_A          137 YWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG--------  207 (267)
T ss_dssp             EEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC--------
T ss_pred             EEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC--------
Confidence            55543   3678888876432 2222 22334578899999876655 445568899999976443222211        


Q ss_pred             cccCCcceEEEEEEccCCCeEEEEe-CCCcEEEEeec
Q 038439          143 DEDAGSYFISAVCWKSDSPTMLTAN-SQGTIKVLVLA  178 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~  178 (179)
                           ......++..  +..|+.+. ..+.|.++|..
T Consensus       208 -----~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~  237 (267)
T 1npe_A          208 -----LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLA  237 (267)
T ss_dssp             -----CCSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred             -----CCCceEEEEe--CCEEEEEECCCCeEEEEeCC
Confidence                 1223455553  44455444 56788888864

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.46  E-value=2.8e-06  Score=56.60  Aligned_cols=107  Identities=12%  Similarity=0.116  Sum_probs=76.2

Q ss_pred             eeEEEEeeCCeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEE-EEeccCCcEEEEEcCCCcccccccc
Q 038439           56 VSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI-ACGSESNEVYVYHKEISKPVTWHRF  134 (179)
Q Consensus        56 i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~d~~v~vwd~~~~~~~~~~~~  134 (179)
                      ...+.|+.+.++.+.+.++.|+++|+.+++.+..+ - ..........+++..+ +..-.++.+.+||..+.+.+..+..
T Consensus        57 tqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~  134 (268)
T 3nok_A           57 TQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY  134 (268)
T ss_dssp             EEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred             cceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence            36788875577788888899999999999988877 3 2334443344454444 4445688999999999999888775


Q ss_pred             CCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          135 SSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      ..           .  -+.++  ++++.|+.+..++.|.++|.++
T Consensus       135 ~~-----------e--GwGLt--~Dg~~L~vSdGs~~l~~iDp~T  164 (268)
T 3nok_A          135 SG-----------E--GWGLC--YWNGKLVRSDGGTMLTFHEPDG  164 (268)
T ss_dssp             SS-----------C--CCCEE--EETTEEEEECSSSEEEEECTTT
T ss_pred             CC-----------c--eeEEe--cCCCEEEEECCCCEEEEEcCCC
Confidence            31           1  13333  5678888887888999998653

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.45  E-value=0.00013  Score=51.65  Aligned_cols=163  Identities=7%  Similarity=-0.036  Sum_probs=97.2

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCCCcee-------------eecccCceeEEEEeeC-C-eEE
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPC-------------VHGHKKAVSYVKFLSN-D-ELA   68 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~~~~~~~~-~-~l~   68 (179)
                      ..|+..++...+....+.....+..++|.+.+..++.+-.....+             +.........+++.+. + +++
T Consensus        96 ~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~  175 (386)
T 3v65_B           96 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYW  175 (386)
T ss_dssp             SCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEE
T ss_pred             ccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEE
Confidence            456666766555444445556688999998766777665111111             1111223456777765 4 445


Q ss_pred             EecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEec-cC-CcEEEEEcCCCccccccccCCCCCCCCcccC
Q 038439           69 SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGS-ES-NEVYVYHKEISKPVTWHRFSSPDMDDTDEDA  146 (179)
Q Consensus        69 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d-~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  146 (179)
                      +-...+.|.+.++........+.........+++.|.+..++... .. +.|..+++............           
T Consensus       176 ~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~-----------  244 (386)
T 3v65_B          176 TDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH-----------  244 (386)
T ss_dssp             EETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS-----------
T ss_pred             EcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECC-----------
Confidence            556677888888775443333333345678999999766655443 34 67888887654322221110           


Q ss_pred             CcceEEEEEEccCCCeEEEEeC-CCcEEEEeec
Q 038439          147 GSYFISAVCWKSDSPTMLTANS-QGTIKVLVLA  178 (179)
Q Consensus       147 ~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~  178 (179)
                       ....+.++++|++..|+.+.. .+.|..+|+.
T Consensus       245 -~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d  276 (386)
T 3v65_B          245 -LFWPNGLTIDYAGRRMYWVDAKHHVIERANLD  276 (386)
T ss_dssp             -CSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred             -CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence             335788999987666665544 5678877753

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.41  E-value=1.6e-05  Score=60.30  Aligned_cols=61  Identities=15%  Similarity=0.145  Sum_probs=49.1

Q ss_pred             CcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccC
Q 038439           74 STLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFS  135 (179)
Q Consensus        74 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~  135 (179)
                      +.|..||+.+++.+..+.. ...+....+...+..++.++.|+.+++||.++++.+..+...
T Consensus       457 g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~  517 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG  517 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC
Confidence            6799999999988877753 333444556778888888999999999999999998877654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.39  E-value=0.00018  Score=50.25  Aligned_cols=163  Identities=7%  Similarity=-0.044  Sum_probs=96.9

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCCCcee-------------eecccCceeEEEEeeC-C-eEE
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPC-------------VHGHKKAVSYVKFLSN-D-ELA   68 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~~~~~~~~-~-~l~   68 (179)
                      ..|+..++...+....+.....+..++|++....++.+-.....+             +.........+++.+. + +++
T Consensus        53 ~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~  132 (349)
T 3v64_C           53 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYW  132 (349)
T ss_dssp             SCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEE
T ss_pred             cceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEE
Confidence            445666665544444444455688999998776777665111111             1111233457888775 4 445


Q ss_pred             EecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEe-ccC-CcEEEEEcCCCccccccccCCCCCCCCcccC
Q 038439           69 SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACG-SES-NEVYVYHKEISKPVTWHRFSSPDMDDTDEDA  146 (179)
Q Consensus        69 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~d-~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  146 (179)
                      +-...+.|.+.++........+.........+++.|.+..++.. ... +.|...++............           
T Consensus       133 ~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~-----------  201 (349)
T 3v64_C          133 TDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH-----------  201 (349)
T ss_dssp             EETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSS-----------
T ss_pred             EcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECC-----------
Confidence            55667889999987544333333334567899999965555444 444 77888887653322211110           


Q ss_pred             CcceEEEEEEccCCCeEEEEeC-CCcEEEEeec
Q 038439          147 GSYFISAVCWKSDSPTMLTANS-QGTIKVLVLA  178 (179)
Q Consensus       147 ~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~  178 (179)
                       ....+.++++|++..|+.+.. .+.|..+|+.
T Consensus       202 -~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d  233 (349)
T 3v64_C          202 -LFWPNGLTIDYAGRRMYWVDAKHHVIERANLD  233 (349)
T ss_dssp             -CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             -CCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence             335788999987766665544 5678877753

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.35  E-value=1.8e-05  Score=54.23  Aligned_cols=156  Identities=8%  Similarity=-0.016  Sum_probs=91.1

Q ss_pred             CCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeC---------CCcee--eecccCceeEEEEeeCCeEEE
Q 038439            2 AYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQ---------STAPC--VHGHKKAVSYVKFLSNDELAS   69 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~---------~~~~~--~~~~~~~i~~~~~~~~~~l~~   69 (179)
                      .++.|..+|.. ++...... ....+.++...+++. +++...         .++.+  .......+.++...+++.+..
T Consensus       115 ~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~v  192 (330)
T 3hxj_A          115 MDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPDGTEKWRFKTNDAITSAASIGKDGTIYF  192 (330)
T ss_dssp             TTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTCCEEE
T ss_pred             cCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCCCCEeEEEecCCCceeeeEEcCCCEEEE
Confidence            46778888877 66655554 333456667777774 444431         12332  222233455555555555555


Q ss_pred             ecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcc
Q 038439           70 ASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSY  149 (179)
Q Consensus        70 ~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (179)
                      ++  +.+..+| .+++.+..+......+.++...++|.. ..++.++.+..+|. +++.+..+...            ..
T Consensus       193 ~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~-~g~~~~~~~~~------------~~  255 (330)
T 3hxj_A          193 GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTI-YVTSLDGHLYAINP-DGTEKWRFKTG------------KR  255 (330)
T ss_dssp             ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCE-EEEETTTEEEEECT-TSCEEEEEECS------------SC
T ss_pred             Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeE-EEEcCCCeEEEECC-CCCEeEEeeCC------------CC
Confidence            55  7889999 677766666555556777888877754 44566777888874 44444333321            11


Q ss_pred             eEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          150 FISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       150 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      .+..+...+++ .|+.++.+|.|..+|.
T Consensus       256 ~~~~~~~~~~g-~l~v~t~~ggl~~~d~  282 (330)
T 3hxj_A          256 IESSPVIGNTD-TIYFGSYDGHLYAINP  282 (330)
T ss_dssp             CCSCCEECTTS-CEEEECTTCEEEEECT
T ss_pred             ccccceEcCCC-eEEEecCCCCEEEECC
Confidence            12223344444 4667777777877763

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.32  E-value=9.6e-05  Score=56.28  Aligned_cols=75  Identities=7%  Similarity=0.091  Sum_probs=55.1

Q ss_pred             EEEEeeC-CeEEEecCCCc-------------------EEEEecCCCcceeeecCC--C-------CCeEEEEEeeCCC-
Q 038439           58 YVKFLSN-DELASASTDST-------------------LRLWDVKENLPVRTFRGH--M-------NEKNFVGLTVNSE-  107 (179)
Q Consensus        58 ~~~~~~~-~~l~~~~~d~~-------------------v~iwd~~~~~~~~~~~~~--~-------~~v~~~~~~~~~~-  107 (179)
                      .+.+.|+ +.++.++.++.                   |..+|..+++.+..++..  .       ..........+|+ 
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~  318 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP  318 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence            5678888 88888887753                   999999999988776542  1       1222233344665 


Q ss_pred             --EEEEeccCCcEEEEEcCCCcccccc
Q 038439          108 --YIACGSESNEVYVYHKEISKPVTWH  132 (179)
Q Consensus       108 --~~~~~~~d~~v~vwd~~~~~~~~~~  132 (179)
                        .++.++.+|.++++|.++++.+...
T Consensus       319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~  345 (689)
T 1yiq_A          319 RKVLMQAPKNGFFYVIDRATGELLSAK  345 (689)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEEEECCCCeEEEEECCCCCEeccc
Confidence              7889999999999999999987443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.31  E-value=0.0002  Score=47.26  Aligned_cols=153  Identities=9%  Similarity=0.005  Sum_probs=90.9

Q ss_pred             eeEEeecCCC--ceeEEEEcCCCCeEEEEeCCC-cee--eeccc----------Ccee--EEEEeeCCeEEEecCCCcEE
Q 038439           15 ASVLNIDMKA--NICCVKYNPGSSNYIAKYQST-APC--VHGHK----------KAVS--YVKFLSNDELASASTDSTLR   77 (179)
Q Consensus        15 ~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~-~~~--~~~~~----------~~i~--~~~~~~~~~l~~~~~d~~v~   77 (179)
                      +.+.++.|..  -...+.|++ +..+.++|..+ ..+  +.-.+          ....  .+....+..+...-.++.+.
T Consensus        10 ~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~   88 (243)
T 3mbr_X           10 RVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGF   88 (243)
T ss_dssp             EEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred             EEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEE
Confidence            5666777654  467999987 43445555221 111  11111          1111  23333334444555688999


Q ss_pred             EEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEc
Q 038439           78 LWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWK  157 (179)
Q Consensus        78 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  157 (179)
                      ++|..+.+.+.++......   ..+.+++..|+++..++.|.++|..+.+.+..+........       -..++.+.|.
T Consensus        89 v~D~~tl~~~~ti~~~~~G---wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~-------~~~lNeLe~~  158 (243)
T 3mbr_X           89 VYDLATLTPRARFRYPGEG---WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRP-------LDNLNELEWV  158 (243)
T ss_dssp             EEETTTTEEEEEEECSSCC---CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEE-------CCCEEEEEEE
T ss_pred             EEECCcCcEEEEEeCCCCc---eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcc-------cccceeeEEe
Confidence            9999999999888754322   33446777777666789999999999888777665322000       1245566665


Q ss_pred             cCCCeEEEEeCCCcEEEEeecC
Q 038439          158 SDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       158 ~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                       +|+..+..-.+..|.+.|.++
T Consensus       159 -~G~lyanvw~s~~I~vIDp~t  179 (243)
T 3mbr_X          159 -NGELLANVWLTSRIARIDPAS  179 (243)
T ss_dssp             -TTEEEEEETTTTEEEEECTTT
T ss_pred             -CCEEEEEECCCCeEEEEECCC
Confidence             565454444566777777653

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.25  E-value=0.00013  Score=55.29  Aligned_cols=101  Identities=6%  Similarity=0.029  Sum_probs=67.5

Q ss_pred             eEEEecCCCcEEEEecCCCcceeeecCCC-----------C-Ce------------------------EEEEEeeCCCEE
Q 038439           66 ELASASTDSTLRLWDVKENLPVRTFRGHM-----------N-EK------------------------NFVGLTVNSEYI  109 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-----------~-~v------------------------~~~~~~~~~~~~  109 (179)
                      .++.++.+|.+.++|..+++.+...+...           . ++                        ..++++|+...+
T Consensus       316 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~  395 (668)
T 1kv9_A          316 VLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLV  395 (668)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEE
T ss_pred             EEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEE
Confidence            58888999999999999998774332111           0 00                        126777776665


Q ss_pred             EEe------------------------------------ccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEE
Q 038439          110 ACG------------------------------------SESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISA  153 (179)
Q Consensus       110 ~~~------------------------------------~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  153 (179)
                      ++.                                    ..+|.|..||+.+++.+.......             ....
T Consensus       396 yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-------------~~~~  462 (668)
T 1kv9_A          396 YIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-------------HWNG  462 (668)
T ss_dssp             EEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-------------SCCC
T ss_pred             EEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-------------CCcC
Confidence            541                                    123789999999998876655421             1222


Q ss_pred             EEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          154 VCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       154 ~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      ..+...+.+++.++.||.+++||.++
T Consensus       463 ~~~~t~gg~vf~g~~dg~l~a~d~~t  488 (668)
T 1kv9_A          463 GTLSTAGNLVFQGTAAGQMHAYSADK  488 (668)
T ss_dssp             CEEEETTTEEEEECTTSEEEEEETTT
T ss_pred             ceeEeCCCEEEEECCcccchhhhhhc
Confidence            23344678899999999999999753

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.24  E-value=4.8e-05  Score=56.64  Aligned_cols=101  Identities=10%  Similarity=-0.022  Sum_probs=66.6

Q ss_pred             eEEEecCCCcEEEEecCCCcceeeecCCC-------------CCe--------------------------EEEEEeeCC
Q 038439           66 ELASASTDSTLRLWDVKENLPVRTFRGHM-------------NEK--------------------------NFVGLTVNS  106 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-------------~~v--------------------------~~~~~~~~~  106 (179)
                      .++.++.++.+.++|..+++.+..+....             .++                          ..++++|+.
T Consensus       318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~  397 (571)
T 2ad6_A          318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES  397 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred             EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence            35678889999999999998776553211             011                          235788877


Q ss_pred             CEEEEec-------------------------------------cCCcEEEEEcCCCccccccccCCCCCCCCcccCCcc
Q 038439          107 EYIACGS-------------------------------------ESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSY  149 (179)
Q Consensus       107 ~~~~~~~-------------------------------------~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (179)
                      ..+++..                                     .++.|..||+.+++.+........            
T Consensus       398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~------------  465 (571)
T 2ad6_A          398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA------------  465 (571)
T ss_dssp             TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC------------
T ss_pred             CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCC------------
Confidence            6766543                                     347899999999887765543211            


Q ss_pred             eEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          150 FISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       150 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                       +........+..++.++.||.++.+|.++
T Consensus       466 -~~~~~~~t~gg~v~~g~~dg~l~a~D~~t  494 (571)
T 2ad6_A          466 -AWGGTLYTKGGLVWYATLDGYLKALDNKD  494 (571)
T ss_dssp             -CCSBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred             -ccceeEEECCCEEEEEcCCCeEEEEECCC
Confidence             11111223466788899999999999754

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.21  E-value=8.3e-06  Score=62.60  Aligned_cols=112  Identities=12%  Similarity=0.085  Sum_probs=70.1

Q ss_pred             ceeEEEEe-eC-CeEEEec-CC----CcEEEEecCCC-cceee-ecCCCCCeEEEEEeeCCCEEEEeccC-----CcEEE
Q 038439           55 AVSYVKFL-SN-DELASAS-TD----STLRLWDVKEN-LPVRT-FRGHMNEKNFVGLTVNSEYIACGSES-----NEVYV  120 (179)
Q Consensus        55 ~i~~~~~~-~~-~~l~~~~-~d----~~v~iwd~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~d-----~~v~v  120 (179)
                      .+...+|+ |+ .+++.+. .+    ..|+++|+.++ +.+.. +.   .....+.|+|||+.|+....+     ..|..
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            57788999 99 6666443 22    25999999988 63321 11   113467899999887766654     25778


Q ss_pred             EEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC---CCcEEEEeec
Q 038439          121 YHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS---QGTIKVLVLA  178 (179)
Q Consensus       121 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~  178 (179)
                      +++.+++..........        . ......+.|+|||++|+..+.   ...|.++|+.
T Consensus       252 ~~lgt~~~~~~lv~~~~--------~-~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~  303 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEH--------N-PLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR  303 (751)
T ss_dssp             EETTSCGGGCEEEEECC--------C-TTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred             EECCCCchhcEEEEecC--------C-CceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence            88877643211111100        0 234567899999998887653   3457777764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.20  E-value=0.00062  Score=48.45  Aligned_cols=163  Identities=9%  Similarity=-0.062  Sum_probs=101.1

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCCCcee-----------------eecccCceeEEEEeeC--
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPC-----------------VHGHKKAVSYVKFLSN--   64 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~i~~~~~~~~--   64 (179)
                      ..|+..++........+.....+..++|++.+..++.+-.....+                 +.........+++.+.  
T Consensus        92 ~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~  171 (400)
T 3p5b_L           92 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS  171 (400)
T ss_dssp             TEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTT
T ss_pred             ceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCC
Confidence            456666766655544555667789999998766776664111111                 2222334567888774  


Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc--CCcEEEEEcCCCccccccccCCCCCCCC
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE--SNEVYVYHKEISKPVTWHRFSSPDMDDT  142 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--d~~v~vwd~~~~~~~~~~~~~~~~~~~~  142 (179)
                      .++++-...+.|.+.++........+.........+++.|.+.+|+....  .+.|...++............       
T Consensus       172 ~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~-------  244 (400)
T 3p5b_L          172 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN-------  244 (400)
T ss_dssp             EEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSS-------
T ss_pred             ceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECC-------
Confidence            45555566788999998765444444434455789999997666555442  367888887654332221110       


Q ss_pred             cccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEeec
Q 038439          143 DEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVLA  178 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~  178 (179)
                           -.....+++++++..|+.+.. .+.|..+|+.
T Consensus       245 -----l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d  276 (400)
T 3p5b_L          245 -----IQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  276 (400)
T ss_dssp             -----CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             -----CCceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence                 245788999987777766654 5678777753

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.17  E-value=0.0002  Score=49.17  Aligned_cols=110  Identities=10%  Similarity=-0.020  Sum_probs=70.0

Q ss_pred             ceeEEEEee-CCeEEEecCCCcEEEEecCCCcceeeecC-----CCCCeEEEEEee-CCCEEEEecc-------------
Q 038439           55 AVSYVKFLS-NDELASASTDSTLRLWDVKENLPVRTFRG-----HMNEKNFVGLTV-NSEYIACGSE-------------  114 (179)
Q Consensus        55 ~i~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~~~~~~~-------------  114 (179)
                      ....+++.+ ++.|+.+...+.+..+|..+++. ..+..     .......+++.+ +|+++++-..             
T Consensus        81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~  159 (322)
T 2fp8_A           81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD  159 (322)
T ss_dssp             CEEEEEEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred             CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence            467888987 56666665555688888765432 22211     123467899999 8987766432             


Q ss_pred             ----CCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEE-eCCCcEEEEeec
Q 038439          115 ----SNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTA-NSQGTIKVLVLA  178 (179)
Q Consensus       115 ----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~  178 (179)
                          ++.|..+|..+++.......             ......++++|+++.|+.+ +..+.|.+|++.
T Consensus       160 ~~~~~g~v~~~d~~~~~~~~~~~~-------------~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~  215 (322)
T 2fp8_A          160 TSDKTGRLIKYDPSTKETTLLLKE-------------LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLE  215 (322)
T ss_dssp             HTCCCEEEEEEETTTTEEEEEEEE-------------ESCCCEEEECTTSSEEEEEEGGGTEEEEEESS
T ss_pred             ccCCCceEEEEeCCCCEEEEeccC-------------CccCcceEECCCCCEEEEEeCCCCeEEEEECC
Confidence                36688888776653221111             2234668999999866655 556889998864

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.09  E-value=0.0011  Score=47.64  Aligned_cols=172  Identities=6%  Similarity=-0.017  Sum_probs=94.0

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCC----Ccee--eec-----------ccCceeEEEEeeC-C
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQS----TAPC--VHG-----------HKKAVSYVKFLSN-D   65 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~--~~~-----------~~~~i~~~~~~~~-~   65 (179)
                      +.|+.+|..+++..........+..++++++|. ++++...    ...+  +..           .......+++.|+ +
T Consensus       162 ~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G  240 (433)
T 4hw6_A          162 DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNG  240 (433)
T ss_dssp             SCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTC
T ss_pred             CCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCC
Confidence            456666666665544444455689999999996 6655421    1111  111           1122345778884 4


Q ss_pred             eEE-EecCCCcEEEEecCCCcceeee-cC-CCCCeEEEEEeeCCCEEE-EeccCCcEEEEEcCC--Cccc--ccccc--C
Q 038439           66 ELA-SASTDSTLRLWDVKENLPVRTF-RG-HMNEKNFVGLTVNSEYIA-CGSESNEVYVYHKEI--SKPV--TWHRF--S  135 (179)
Q Consensus        66 ~l~-~~~~d~~v~iwd~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~~~-~~~~d~~v~vwd~~~--~~~~--~~~~~--~  135 (179)
                      .|. +-..++.|+.+|..++.....+ .. .......++|+|++++|+ +-...+.|..+++..  +...  ..+.-  .
T Consensus       241 ~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g  320 (433)
T 4hw6_A          241 KIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHS  320 (433)
T ss_dssp             CEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTT
T ss_pred             eEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCC
Confidence            444 5456778999998866552222 21 122334699999998554 445578899988653  2211  01100  0


Q ss_pred             CCCCC-CCcccCCcceEEEEEE---------ccCCCeEEEEeCCCcEEEEe
Q 038439          136 SPDMD-DTDEDAGSYFISAVCW---------KSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       136 ~~~~~-~~~~~~~~~~i~~~~~---------~~~~~~l~~~~~dg~i~iwd  176 (179)
                      ..... .......-.....+++         .++++++++-...+.|+.++
T Consensus       321 ~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~  371 (433)
T 4hw6_A          321 SPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT  371 (433)
T ss_dssp             CCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred             CCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence            00000 0000000224677888         66777666666677788776

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.08  E-value=0.00091  Score=46.09  Aligned_cols=164  Identities=9%  Similarity=0.008  Sum_probs=96.0

Q ss_pred             CccEEEEEcCCce--eEEeecCCCceeEEEEcCCCCeEEEEeCCCcee--------------eecccCceeEEEEeeC-C
Q 038439            3 YGKVKVWCTRQEA--SVLNIDMKANICCVKYNPGSSNYIAKYQSTAPC--------------VHGHKKAVSYVKFLSN-D   65 (179)
Q Consensus         3 d~~i~vwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~i~~~~~~~~-~   65 (179)
                      ...|+..++....  ....+..-..+..++|.+.+..++.+-.....+              +.........+++.+. +
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g   91 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   91 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence            3567778877653  222222334577899998765676665111111              1111223456788765 4


Q ss_pred             -eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEec--cCCcEEEEEcCCCccccccccCCCCCCCC
Q 038439           66 -ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGS--ESNEVYVYHKEISKPVTWHRFSSPDMDDT  142 (179)
Q Consensus        66 -~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~~  142 (179)
                       ++++-...+.|.++++........+.........+++.|.+.+++...  ..+.|...++............       
T Consensus        92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~-------  164 (318)
T 3sov_A           92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE-------  164 (318)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSS-------
T ss_pred             eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECC-------
Confidence             445556678899999875433333333445678999999766655554  3577888887643322111110       


Q ss_pred             cccCCcceEEEEEEccCCCeEEEEe-CCCcEEEEeec
Q 038439          143 DEDAGSYFISAVCWKSDSPTMLTAN-SQGTIKVLVLA  178 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~  178 (179)
                           -...+.+++++++..|+.+. ..+.|..+|+.
T Consensus       165 -----l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d  196 (318)
T 3sov_A          165 -----IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD  196 (318)
T ss_dssp             -----CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             -----CCCccEEEEeccCCEEEEEECCCCEEEEEcCC
Confidence                 33568899999776666654 46678887753

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.06  E-value=0.0002  Score=55.05  Aligned_cols=102  Identities=12%  Similarity=0.063  Sum_probs=62.0

Q ss_pred             ceeEEEEc-CCCCeEEEEe-CCCc---ee--e--ecc-c---Cc----eeEEEEeeC-CeEEEecCC-----CcEEEEec
Q 038439           25 NICCVKYN-PGSSNYIAKY-QSTA---PC--V--HGH-K---KA----VSYVKFLSN-DELASASTD-----STLRLWDV   81 (179)
Q Consensus        25 ~v~~~~~~-~~~~~~~~~~-~~~~---~~--~--~~~-~---~~----i~~~~~~~~-~~l~~~~~d-----~~v~iwd~   81 (179)
                      .+...+|| |||+.++.+. ..+.   .+  +  .+. .   ..    ...+.|+|+ +.|+..+.+     ..|..+++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l  254 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM  254 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence            57889999 9996555443 1111   12  1  111 1   11    235789999 666666554     25778888


Q ss_pred             CCCcc--eeeecC-CCCCeEEEEEeeCCCEEEEecc---CCcEEEEEcCCC
Q 038439           82 KENLP--VRTFRG-HMNEKNFVGLTVNSEYIACGSE---SNEVYVYHKEIS  126 (179)
Q Consensus        82 ~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~~~~~---d~~v~vwd~~~~  126 (179)
                      .++..  ...+.. .......+.|+|||++|+....   ...|.++|+.++
T Consensus       255 gt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          255 GKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             TSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             CCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            76542  223322 2234567889999999876542   446888898875

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.02  E-value=4.7e-05  Score=58.04  Aligned_cols=164  Identities=9%  Similarity=-0.071  Sum_probs=90.8

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCCCcee----eec-------------ccCceeEEEEeeC-
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPC----VHG-------------HKKAVSYVKFLSN-   64 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~-------------~~~~i~~~~~~~~-   64 (179)
                      .+.|+..++.+.+....+.....+..++|.+.+..++.+-.....|    +.+             .......|++.+. 
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~  464 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH  464 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS
T ss_pred             ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC
Confidence            3456677776665544444455678899998776666654111111    111             1112345677654 


Q ss_pred             -CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc--CCcEEEEEcCCCccccccccCCCCCCC
Q 038439           65 -DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE--SNEVYVYHKEISKPVTWHRFSSPDMDD  141 (179)
Q Consensus        65 -~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--d~~v~vwd~~~~~~~~~~~~~~~~~~~  141 (179)
                       .++++-...+.|.+.++........+.........+++.|.+.+|+....  .+.|..+++............      
T Consensus       465 g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~------  538 (699)
T 1n7d_A          465 SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN------  538 (699)
T ss_dssp             SBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSS------
T ss_pred             CcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCC------
Confidence             44455556788999998754433333322345678899987655555443  267777776543221111100      


Q ss_pred             CcccCCcceEEEEEEccCCCeEEEEe-CCCcEEEEeec
Q 038439          142 TDEDAGSYFISAVCWKSDSPTMLTAN-SQGTIKVLVLA  178 (179)
Q Consensus       142 ~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~  178 (179)
                            ....+.|+|+|++..|+.+. ..+.|..+++.
T Consensus       539 ------l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d  570 (699)
T 1n7d_A          539 ------IQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  570 (699)
T ss_dssp             ------CSSCCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred             ------CCCccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence                  22356788998766555544 45678887763

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.96  E-value=0.0035  Score=48.55  Aligned_cols=162  Identities=9%  Similarity=-0.062  Sum_probs=96.4

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCCCcee-----------------eecccCceeEEEEeeC--
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPC-----------------VHGHKKAVSYVKFLSN--   64 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~i~~~~~~~~--   64 (179)
                      ..|+..++...+....+.....+..++|.+....++.+-.....|                 +.........|++.+.  
T Consensus       404 ~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~  483 (791)
T 3m0c_C          404 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS  483 (791)
T ss_dssp             SSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             cceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCC
Confidence            345555555544444444556788999998665666654111111                 2222334567888766  


Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc--CCcEEEEEcCCCccccccccCCCCCCCC
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE--SNEVYVYHKEISKPVTWHRFSSPDMDDT  142 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--d~~v~vwd~~~~~~~~~~~~~~~~~~~~  142 (179)
                      .++++-...+.|.+.++........+.........|++.|.+.+|+....  .+.|...++............       
T Consensus       484 ~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~-------  556 (791)
T 3m0c_C          484 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN-------  556 (791)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS-------
T ss_pred             cEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCC-------
Confidence            44555566789999998754433333334456789999997656555442  367888888654432222110       


Q ss_pred             cccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEee
Q 038439          143 DEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVL  177 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~  177 (179)
                           -.....|++.+.+..|+.+.. .+.|..+++
T Consensus       557 -----l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~  587 (791)
T 3m0c_C          557 -----IQWPNGITLDLLSGRLYWVDSKLHSISSIDV  587 (791)
T ss_dssp             -----CSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             -----CCCceEEEEecCCCeEEEEeCCCCcEEEEec
Confidence                 245788888876666666543 456777665

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.94  E-value=0.0012  Score=43.89  Aligned_cols=120  Identities=9%  Similarity=0.165  Sum_probs=80.4

Q ss_pred             cccCceeEEEEeeC-CeE-EEecCCCcEEEEecCCCcceeeecC-CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCc
Q 038439           51 GHKKAVSYVKFLSN-DEL-ASASTDSTLRLWDVKENLPVRTFRG-HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK  127 (179)
Q Consensus        51 ~~~~~i~~~~~~~~-~~l-~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~  127 (179)
                      +-...+..++|.|+ +.| ++...++.|...|.. ++.++.+.- .......+++.+++.++++.-.++.+.++++....
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~  102 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS  102 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence            44457899999988 544 456678888889987 777776632 23567788999988877776667889999887644


Q ss_pred             cc---cccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          128 PV---TWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       128 ~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      .+   ....+...     . .........++|+|.++.|+++.......+|.+
T Consensus       103 ~i~~~~~~~~~~~-----~-~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~  149 (255)
T 3qqz_A          103 EVKILKKIKIPLQ-----E-SPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKV  149 (255)
T ss_dssp             CEEEEEEEECCCS-----S-CCCSSCCEEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred             eeeeeeeeccccc-----c-ccccCCcceEEEeCCCCEEEEEECcCCceEEEE
Confidence            21   22211100     0 011445789999999988888777655566554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.92  E-value=0.00085  Score=48.21  Aligned_cols=141  Identities=9%  Similarity=0.024  Sum_probs=80.8

Q ss_pred             ceeEEEEcC-CCCeEEEEeCCCc---------ee--eecccCceeEEEEeeC-CeEEEecC-CC----cEEEEecCCCcc
Q 038439           25 NICCVKYNP-GSSNYIAKYQSTA---------PC--VHGHKKAVSYVKFLSN-DELASAST-DS----TLRLWDVKENLP   86 (179)
Q Consensus        25 ~v~~~~~~~-~~~~~~~~~~~~~---------~~--~~~~~~~i~~~~~~~~-~~l~~~~~-d~----~v~iwd~~~~~~   86 (179)
                      ....++++| ++..++++....+         .+  +.........++++++ +.|+.+.. .+    .+.+.+. .+..
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCce
Confidence            457889998 3446666542111         11  2222344667888888 64555443 22    2333343 2222


Q ss_pred             e--eeecCCCCCeEEEEEee-CCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeE
Q 038439           87 V--RTFRGHMNEKNFVGLTV-NSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTM  163 (179)
Q Consensus        87 ~--~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  163 (179)
                      .  ..+.. ......++++| ++.++++-..++.|..++...+..........           ......++|+|++++|
T Consensus       217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~-----------~~~P~gia~~pdG~~l  284 (430)
T 3tc9_A          217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQD-----------SGWEFHIQFHPSGNYA  284 (430)
T ss_dssp             CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSS-----------SSCCEEEEECTTSSEE
T ss_pred             eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC-----------CCcceeEEEcCCCCEE
Confidence            1  22221 23356788999 67767776678899999988665422222110           2346789999999955


Q ss_pred             EEE-eCCCcEEEEeec
Q 038439          164 LTA-NSQGTIKVLVLA  178 (179)
Q Consensus       164 ~~~-~~dg~i~iwd~~  178 (179)
                      +.+ ...+.|..++..
T Consensus       285 yv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          285 YIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEEETTTTEEEEEEEE
T ss_pred             EEEECCCCEEEEEeCC
Confidence            554 457788887753

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.88  E-value=0.0028  Score=45.57  Aligned_cols=121  Identities=4%  Similarity=-0.034  Sum_probs=75.8

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeC---C-Ccee--eecc-----------cCceeEEEEeeC--
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQ---S-TAPC--VHGH-----------KKAVSYVKFLSN--   64 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~-~~~~--~~~~-----------~~~i~~~~~~~~--   64 (179)
                      +.|+.+|..+++.............++|++++..++++..   . ...+  +...           ......+++.|+  
T Consensus       159 ~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g  238 (430)
T 3tc9_A          159 HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPING  238 (430)
T ss_dssp             EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTC
T ss_pred             CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCC
Confidence            4677777776655444455567899999999975766652   1 1111  1111           123456788884  


Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecC-CCCCeEEEEEeeCCCEEE-EeccCCcEEEEEcC
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRG-HMNEKNFVGLTVNSEYIA-CGSESNEVYVYHKE  124 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~~~~d~~v~vwd~~  124 (179)
                      .++++-..++.|..++...+........ .......++|+|+|++++ +-...+.|..++..
T Consensus       239 ~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          239 ELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            4455555678899999876543222221 223467899999999554 44567888888765

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.80  E-value=0.0035  Score=47.04  Aligned_cols=52  Identities=6%  Similarity=-0.136  Sum_probs=33.2

Q ss_pred             CCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          115 SNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       115 d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      .|.|..||+.+++.+-......+.       . ...     ....+..++.++.||.++.||.++
T Consensus       452 ~G~l~A~D~~tG~~~W~~~~~~~~-------~-~g~-----~~tagg~vf~gt~dg~l~A~D~~t  503 (599)
T 1w6s_A          452 LGQIKAYNAITGDYKWEKMERFAV-------W-GGT-----MATAGDLVFYGTLDGYLKARDSDT  503 (599)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCC-------C-SBC-----EEETTTEEEEECTTSEEEEEETTT
T ss_pred             cCeEEEEECCCCCEEeEecCCCCc-------c-Ccc-----eEecCCEEEEECCCCeEEEEECCC
Confidence            467888888888876555432110       0 111     122567788899999999999764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.77  E-value=0.00062  Score=50.87  Aligned_cols=63  Identities=13%  Similarity=0.065  Sum_probs=45.8

Q ss_pred             CCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccC
Q 038439           72 TDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFS  135 (179)
Q Consensus        72 ~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~  135 (179)
                      .++.|..||+.+++.+-+..... ....-.....+..++.++.|+.++.||.++++.+..+...
T Consensus       464 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~  526 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG  526 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCC
Confidence            36789999999998876665322 2222222334667888999999999999999998877663

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.75  E-value=0.0039  Score=42.49  Aligned_cols=160  Identities=11%  Similarity=0.106  Sum_probs=83.3

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-C-CCcee--eecccCcee------------EEEEeeCC-
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-Q-STAPC--VHGHKKAVS------------YVKFLSND-   65 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~-~~~~~--~~~~~~~i~------------~~~~~~~~-   65 (179)
                      ++.|..||... +....+.....+..+++.+++. ++++. . ....+  +....+.+.            .++..+++ 
T Consensus        52 ~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~  129 (306)
T 2p4o_A           52 VGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ  129 (306)
T ss_dssp             TTEEEEECTTC-CEEEEEECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE
T ss_pred             CCeEEEECCCC-ceEEEEeCCCCceeEEEcCCCc-EEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCc
Confidence            34555555443 2333344456788999999996 54443 1 12122  222222222            22222232 


Q ss_pred             eEEEecCCCcEEEEecCCCcc-eeee---------cCCCCCeEEEEEeeCCCEEEEe-ccCCcEEEEEcCC-Cccccccc
Q 038439           66 ELASASTDSTLRLWDVKENLP-VRTF---------RGHMNEKNFVGLTVNSEYIACG-SESNEVYVYHKEI-SKPVTWHR  133 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~~~-~~~~---------~~~~~~v~~~~~~~~~~~~~~~-~~d~~v~vwd~~~-~~~~~~~~  133 (179)
                      .+++-..++.|.++|...++. +...         .........+  +|++++++++ ...+.|..+|+.. ++.-....
T Consensus       130 ~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~  207 (306)
T 2p4o_A          130 YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEI  207 (306)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEE
T ss_pred             EEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEE
Confidence            344444578888888765421 1100         0111234455  8888766544 5578899999875 32110000


Q ss_pred             cCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          134 FSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       134 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      +..           ......+++.++|+++++....+.|.++|.
T Consensus       208 ~~~-----------~~~P~gi~vd~dG~l~va~~~~~~V~~~~~  240 (306)
T 2p4o_A          208 FVE-----------QTNIDDFAFDVEGNLYGATHIYNSVVRIAP  240 (306)
T ss_dssp             EEE-----------SCCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred             Eec-----------cCCCCCeEECCCCCEEEEeCCCCeEEEECC
Confidence            000           112455778888887666666778888764

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.74  E-value=0.0014  Score=46.82  Aligned_cols=118  Identities=13%  Similarity=0.065  Sum_probs=73.5

Q ss_pred             ceeEEEEeeCCeEEEecCCCcEEEEecCCCc------------ceeeecC------CCCCeEEEEEeeC---CCEEEEec
Q 038439           55 AVSYVKFLSNDELASASTDSTLRLWDVKENL------------PVRTFRG------HMNEKNFVGLTVN---SEYIACGS  113 (179)
Q Consensus        55 ~i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~------------~~~~~~~------~~~~v~~~~~~~~---~~~~~~~~  113 (179)
                      .|..+..+|++.+++...+..|.|-.+..+.            ..+.+.-      ...+|..+.|+|-   +..|++-.
T Consensus        67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt  146 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK  146 (452)
T ss_dssp             TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred             ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence            5677888888444444456678887776321            0112221      2467999999995   56799999


Q ss_pred             cCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEe--CCCcEEE
Q 038439          114 ESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN--SQGTIKV  174 (179)
Q Consensus       114 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i  174 (179)
                      .|+.|++||+........ .+............ ...|.+++|.+++-.|+..+  .+|.|+-
T Consensus       147 sD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~-~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          147 EDDTITMFDILNSQEKPI-VLNKPNNSFGLDAR-VNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             TTSCEEEEETTCTTSCCE-EESCCCSEEESCSS-CCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             cCCEEEEEEcccCCCCCc-chhccccccCCCcc-cceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence            999999999986332222 12111000000011 25788999999988888855  7787764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.73  E-value=0.0017  Score=49.42  Aligned_cols=112  Identities=12%  Similarity=0.082  Sum_probs=70.8

Q ss_pred             CeEEEecC------CCcEEEEecCCCcceeeecCCC---C----------------------------CeEEEEEeeCCC
Q 038439           65 DELASAST------DSTLRLWDVKENLPVRTFRGHM---N----------------------------EKNFVGLTVNSE  107 (179)
Q Consensus        65 ~~l~~~~~------d~~v~iwd~~~~~~~~~~~~~~---~----------------------------~v~~~~~~~~~~  107 (179)
                      +.++.+..      ++.|..+|..+++.+..+....   .                            ....+++.|+..
T Consensus       163 ~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~  242 (668)
T 1kv9_A          163 GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD  242 (668)
T ss_dssp             TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT
T ss_pred             CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC
Confidence            55555543      5899999999999887664211   0                            011367888888


Q ss_pred             EEEEeccCC-------------------cEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCC---eEEE
Q 038439          108 YIACGSESN-------------------EVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSP---TMLT  165 (179)
Q Consensus       108 ~~~~~~~d~-------------------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~  165 (179)
                      .++.+..++                   .|..+|.++++.+..+....+.....  .. ..+..-..+..+|+   .++.
T Consensus       243 ~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~--~~-~~~~~~~d~~~~G~~~~~v~~  319 (668)
T 1kv9_A          243 LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDF--TA-TQQITLAELNIDGKPRKVLMQ  319 (668)
T ss_dssp             EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC--CC-CSCEEEEEEEETTEEEEEEEE
T ss_pred             EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccc--cC-CCCcEEEEeccCCcEEEEEEE
Confidence            888887665                   39999999999887666532211100  00 12222222333564   6888


Q ss_pred             EeCCCcEEEEeecC
Q 038439          166 ANSQGTIKVLVLAA  179 (179)
Q Consensus       166 ~~~dg~i~iwd~~~  179 (179)
                      ++.+|.++++|.++
T Consensus       320 ~~~~G~l~~lD~~t  333 (668)
T 1kv9_A          320 APKNGFFYVLDRTN  333 (668)
T ss_dssp             CCTTSEEEEEETTT
T ss_pred             ECCCCEEEEEECCC
Confidence            99999999998653

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.73  E-value=0.0075  Score=45.27  Aligned_cols=174  Identities=13%  Similarity=0.112  Sum_probs=96.9

Q ss_pred             CccEEEEEc-CCceeEEeecCCCc------------eeEEEEcCCCCe----EEEEe----------CCCcee--ee--c
Q 038439            3 YGKVKVWCT-RQEASVLNIDMKAN------------ICCVKYNPGSSN----YIAKY----------QSTAPC--VH--G   51 (179)
Q Consensus         3 d~~i~vwd~-~~~~~~~~~~~~~~------------v~~~~~~~~~~~----~~~~~----------~~~~~~--~~--~   51 (179)
                      ++.|.-+|. .+++.+-.+.....            ...++++|.+..    +++..          .+++.+  ..  .
T Consensus        72 ~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~  151 (599)
T 1w6s_A           72 PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSD  151 (599)
T ss_dssp             TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCC
T ss_pred             CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCC
Confidence            678888999 89988877653321            123455433323    44443          345554  11  1


Q ss_pred             cc--CceeEEEEeeCCeEEEec------CCCcEEEEecCCCcceeeecCCCCC---------------------------
Q 038439           52 HK--KAVSYVKFLSNDELASAS------TDSTLRLWDVKENLPVRTFRGHMNE---------------------------   96 (179)
Q Consensus        52 ~~--~~i~~~~~~~~~~l~~~~------~d~~v~iwd~~~~~~~~~~~~~~~~---------------------------   96 (179)
                      +.  ..+.+--...++.++.++      .++.|+.+|.++++.+-.+......                           
T Consensus       152 ~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~  231 (599)
T 1w6s_A          152 IKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWE  231 (599)
T ss_dssp             GGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSS
T ss_pred             CCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCC
Confidence            10  011110001135566555      3789999999999887665532111                           


Q ss_pred             ----------e-EEEEEeeCCCEEEEeccC----------------CcEEEEEcCCCccccccccCCCCCCCCcccCCcc
Q 038439           97 ----------K-NFVGLTVNSEYIACGSES----------------NEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSY  149 (179)
Q Consensus        97 ----------v-~~~~~~~~~~~~~~~~~d----------------~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (179)
                                + ..+++.++...++.+..+                +.|..+|.++++.+-.++...++.-..  .....
T Consensus       232 g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~--d~~~~  309 (599)
T 1w6s_A          232 GDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDY--AGVNV  309 (599)
T ss_dssp             TTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCC--CCCCC
T ss_pred             CcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccc--cCCCc
Confidence                      0 134566777777776654                379999999999876665543321100  00012


Q ss_pred             eEEEEEEc-cCC---CeEEEEeCCCcEEEEeecC
Q 038439          150 FISAVCWK-SDS---PTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       150 ~i~~~~~~-~~~---~~l~~~~~dg~i~iwd~~~  179 (179)
                      ++. +... .+|   ..++.++.+|.++++|.++
T Consensus       310 p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~t  342 (599)
T 1w6s_A          310 MML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTD  342 (599)
T ss_dssp             CEE-EEEECTTSCEEEEEEEECTTSEEEEEETTT
T ss_pred             cEE-EeccccCCcEEEEEEEECCCcEEEEEECCC
Confidence            222 2222 466   4677788899999988653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.68  E-value=0.0057  Score=42.61  Aligned_cols=163  Identities=8%  Similarity=0.088  Sum_probs=97.2

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCC----CCe--EEEEe-CC--Ccee----ee----------c------cc
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPG----SSN--YIAKY-QS--TAPC----VH----------G------HK   53 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~----~~~--~~~~~-~~--~~~~----~~----------~------~~   53 (179)
                      ++-+.+||+ +++.++.+.. +.++.+..-|.    |..  ++++. +.  ...+    +.          .      ..
T Consensus        49 ~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~  126 (355)
T 3amr_A           49 KSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATA  126 (355)
T ss_dssp             TTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECC
T ss_pred             CCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCC
Confidence            457899999 7888777754 44555555442    111  22222 22  1222    11          0      00


Q ss_pred             -CceeEEEE--eeC-C--eEEEecCCCcEEEEecC-------CCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEE
Q 038439           54 -KAVSYVKF--LSN-D--ELASASTDSTLRLWDVK-------ENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYV  120 (179)
Q Consensus        54 -~~i~~~~~--~~~-~--~l~~~~~d~~v~iwd~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~v  120 (179)
                       ..+..+++  +|. +  +++....++.+..|++.       +.+.++++.. .+.+..+...+....|+.+-++.-|..
T Consensus       127 ~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~  205 (355)
T 3amr_A          127 INEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWK  205 (355)
T ss_dssp             CSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEE
T ss_pred             CCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEE
Confidence             23344565  564 3  57777888999999883       3356777764 456788889988889999999877777


Q ss_pred             EEcCC-----CccccccccCCCCCCCCcccCCcceEEEEEE--ccCCC-eEEEEe-CCCcEEEEeec
Q 038439          121 YHKEI-----SKPVTWHRFSSPDMDDTDEDAGSYFISAVCW--KSDSP-TMLTAN-SQGTIKVLVLA  178 (179)
Q Consensus       121 wd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~-~l~~~~-~dg~i~iwd~~  178 (179)
                      ++.+.     .+.+........          ...+..|++  .++++ +|++++ .++...+||.+
T Consensus       206 ~da~p~~~~~~~~v~~~~~g~l----------~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          206 FSAEPDGGSNGTVIDRADGRHL----------TRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EECSTTSCSCCEEEEEBSSSSB----------CSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EeCCcCCCCCceEEEEecCCcc----------ccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            77542     222322211100          335777777  45555 666666 47799999874

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.66  E-value=0.0048  Score=41.09  Aligned_cols=167  Identities=4%  Similarity=0.028  Sum_probs=99.5

Q ss_pred             CccEEEEEcCCceeEEeecC--CCceeEEEEcCCCCeEEEEe------------CCCc--ee--e------ecccCceeE
Q 038439            3 YGKVKVWCTRQEASVLNIDM--KANICCVKYNPGSSNYIAKY------------QSTA--PC--V------HGHKKAVSY   58 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~------------~~~~--~~--~------~~~~~~i~~   58 (179)
                      ++.|...|.. ++.+..+..  ......+++.+++ .++++.            ..+.  .+  .      ...+.....
T Consensus        48 ~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g-~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EG  125 (255)
T 3qqz_A           48 PAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDN-QFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEG  125 (255)
T ss_dssp             TEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTT-EEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEE
T ss_pred             CCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCC-EEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcce
Confidence            4567777776 777776643  3567888888887 454443            1111  11  1      112344679


Q ss_pred             EEEeeC-CeEEEecCCCcEEEEecCC---Ccceeeec-------CCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCC
Q 038439           59 VKFLSN-DELASASTDSTLRLWDVKE---NLPVRTFR-------GHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEIS  126 (179)
Q Consensus        59 ~~~~~~-~~l~~~~~d~~v~iwd~~~---~~~~~~~~-------~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~  126 (179)
                      ++|.|. +.|+++.......+|.+..   ...+..+.       .....+..++++|. +++++.....+.+.++|.. +
T Consensus       126 LA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g  204 (255)
T 3qqz_A          126 LAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-G  204 (255)
T ss_dssp             EEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-C
T ss_pred             EEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-C
Confidence            999999 6777777655556665541   11122221       12335678999996 5566666777889999976 5


Q ss_pred             ccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439          127 KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  176 (179)
                      +.+..+.+.......   ...-.....++|.++|+ |+..+..+.++.|.
T Consensus       205 ~~~~~~~L~~g~~~l---~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~  250 (255)
T 3qqz_A          205 EVIGEMSLTKGSRGL---SHNIKQAEGVAMDASGN-IYIVSEPNRFYRFT  250 (255)
T ss_dssp             CEEEEEECSTTGGGC---SSCCCSEEEEEECTTCC-EEEEETTTEEEEEE
T ss_pred             CEEEEEEcCCccCCc---ccccCCCCeeEECCCCC-EEEEcCCceEEEEE
Confidence            566555554210000   00023578899999998 55557777777664

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.65  E-value=0.00046  Score=51.46  Aligned_cols=63  Identities=8%  Similarity=-0.053  Sum_probs=46.4

Q ss_pred             CCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccC
Q 038439           72 TDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFS  135 (179)
Q Consensus        72 ~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~  135 (179)
                      .++.|..||..+++.+.++... ..+....+...+..+++++.|+.|+.+|.++++.+..+...
T Consensus       442 ~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~  504 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP  504 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence            4578999999999887776532 22222333445667778999999999999999998777654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.60  E-value=0.0071  Score=41.42  Aligned_cols=130  Identities=9%  Similarity=0.036  Sum_probs=73.7

Q ss_pred             ceeEEEEcC-CCCeEEEEe----------CCCcee-eec-----ccCceeEEEEee-C-CeEEEecC-------------
Q 038439           25 NICCVKYNP-GSSNYIAKY----------QSTAPC-VHG-----HKKAVSYVKFLS-N-DELASAST-------------   72 (179)
Q Consensus        25 ~v~~~~~~~-~~~~~~~~~----------~~~~~~-~~~-----~~~~i~~~~~~~-~-~~l~~~~~-------------   72 (179)
                      .+..+++.+ ++ .++++.          ..+... +..     .......+++.+ + ..+++-..             
T Consensus        81 ~p~gi~~~~~~g-~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~  159 (322)
T 2fp8_A           81 RTYDISYNLQNN-QLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD  159 (322)
T ss_dssp             CEEEEEEETTTT-EEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred             CCceEEEcCCCC-cEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence            478899998 66 566553          111111 111     112357788888 7 55554322             


Q ss_pred             ----CCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEe-ccCCcEEEEEcCCCccccccc-cCCCCCCCCcccC
Q 038439           73 ----DSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACG-SESNEVYVYHKEISKPVTWHR-FSSPDMDDTDEDA  146 (179)
Q Consensus        73 ----d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~d~~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~  146 (179)
                          ++.|..+|..+++...... .......++++|+++.++++ ...+.|.+|++..... .... +...         
T Consensus       160 ~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-~~~~~~~~~---------  228 (322)
T 2fp8_A          160 TSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-GTAEVLVKI---------  228 (322)
T ss_dssp             HTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-TCEEEEEEC---------
T ss_pred             ccCCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-CccceEEeC---------
Confidence                3568888876654322221 12334679999999866555 5568899999875321 0000 0000         


Q ss_pred             CcceEEEEEEccCCCeEEEEeC
Q 038439          147 GSYFISAVCWKSDSPTMLTANS  168 (179)
Q Consensus       147 ~~~~i~~~~~~~~~~~l~~~~~  168 (179)
                       .. ...+++.++|++.++...
T Consensus       229 -~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          229 -PN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             -SS-EEEEEECTTSCEEEEEEE
T ss_pred             -CC-CCCeEECCCCCEEEEecC
Confidence             22 677888888886655433

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.56  E-value=0.0084  Score=41.43  Aligned_cols=116  Identities=8%  Similarity=0.027  Sum_probs=76.1

Q ss_pred             eeEEEE---eeC-CeEEEec-------------CCCcEEEEecC---CCcceeeecC-------------CCCCeEEEEE
Q 038439           56 VSYVKF---LSN-DELASAS-------------TDSTLRLWDVK---ENLPVRTFRG-------------HMNEKNFVGL  102 (179)
Q Consensus        56 i~~~~~---~~~-~~l~~~~-------------~d~~v~iwd~~---~~~~~~~~~~-------------~~~~v~~~~~  102 (179)
                      +..+.|   .|+ .++++..             .+..|..+|+.   +++.+....-             .......++.
T Consensus        65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav  144 (334)
T 2p9w_A           65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ  144 (334)
T ss_dssp             EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred             eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence            467888   466 4444332             25779999998   7766544331             1124778999


Q ss_pred             eeCCCEEEEeccC-CcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          103 TVNSEYIACGSES-NEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       103 ~~~~~~~~~~~~d-~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .++|+..++++.. +.|...+.... .+..+....+.      .......+.++++|+++.|++....|.+..+|++
T Consensus       145 D~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~------~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          145 DRDGNSYVAFALGMPAIARVSADGK-TVSTFAWESGN------GGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             CTTSCEEEEEEESSCEEEEECTTSC-CEEEEEECCCC------SSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             CCCCCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCC------cccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            9999999988887 87777776543 22222221110      0003346789999999988888779999999864

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.48  E-value=0.01  Score=40.40  Aligned_cols=111  Identities=11%  Similarity=0.055  Sum_probs=64.8

Q ss_pred             CceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccC--CcEEEEEcCCCcccc
Q 038439           54 KAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSES--NEVYVYHKEISKPVT  130 (179)
Q Consensus        54 ~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d--~~v~vwd~~~~~~~~  130 (179)
                      .....++|.++ .++++-..++.|..||... +....+. ....+..+++.++|+++++....  ..|..+|..+++...
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            34567788888 6555655778888888764 3333332 23457889999999866654332  246677777776433


Q ss_pred             ccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          131 WHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      ......           ......++..+++..+++-..++.|.++|.
T Consensus       110 ~~~~~~-----------~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~  145 (306)
T 2p4o_A          110 LLTLPD-----------AIFLNGITPLSDTQYLTADSYRGAIWLIDV  145 (306)
T ss_dssp             EEECTT-----------CSCEEEEEESSSSEEEEEETTTTEEEEEET
T ss_pred             EEeCCC-----------ccccCcccccCCCcEEEEECCCCeEEEEeC
Confidence            222210           112334444454444444445777777775

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.47  E-value=0.00052  Score=51.27  Aligned_cols=52  Identities=13%  Similarity=0.070  Sum_probs=34.6

Q ss_pred             CCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          115 SNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       115 d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      +|.|..||+.+++.+-......+.       . ...+     ...+..++.++.||.++.||.++
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~-------~-~g~~-----~tagglvf~g~~dg~l~A~D~~t  516 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPL-------W-AGVL-----ATAGNLVFTGTGDGYFKAFDAKS  516 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCC-------C-SCCE-----EETTTEEEEECTTSEEEEEETTT
T ss_pred             cceEEEEECCCCCEEEEecCCCCC-------c-ccce-----EeCCCEEEEECCCCcEEEEECCC
Confidence            578999999999877555432110       0 1111     12467788899999999999764

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.46  E-value=0.0049  Score=44.05  Aligned_cols=99  Identities=12%  Similarity=0.167  Sum_probs=65.3

Q ss_pred             CCcEEEEecCCCcceeeecCC----CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccc------------ccccCC
Q 038439           73 DSTLRLWDVKENLPVRTFRGH----MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVT------------WHRFSS  136 (179)
Q Consensus        73 d~~v~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~------------~~~~~~  136 (179)
                      ++.||.-++.....-+.++..    -..+..+..+|+|++++..+ +..|.|-.+..+....            .+....
T Consensus        40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~  118 (452)
T 3pbp_A           40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE  118 (452)
T ss_dssp             TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG
T ss_pred             CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCC
Confidence            356777776644334444332    23578899999999998876 4578898887332111            122211


Q ss_pred             CCCCCCcccCCcceEEEEEEcc---CCCeEEEEeCCCcEEEEeec
Q 038439          137 PDMDDTDEDAGSYFISAVCWKS---DSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       137 ~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .      ......+|..+.|+|   .+..|++-..|+.|++||+.
T Consensus       119 ~------~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~  157 (452)
T 3pbp_A          119 E------EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDIL  157 (452)
T ss_dssp             C------C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETT
T ss_pred             c------ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcc
Confidence            0      000156799999999   45789999999999999985

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.44  E-value=0.015  Score=41.20  Aligned_cols=139  Identities=5%  Similarity=-0.140  Sum_probs=78.9

Q ss_pred             ceeEEEEcCCCCeEEEEeCC----------Cce--e-eecccCceeEEEEeeC-CeEEEec-CC-CcEEEEecCCCccee
Q 038439           25 NICCVKYNPGSSNYIAKYQS----------TAP--C-VHGHKKAVSYVKFLSN-DELASAS-TD-STLRLWDVKENLPVR   88 (179)
Q Consensus        25 ~v~~~~~~~~~~~~~~~~~~----------~~~--~-~~~~~~~i~~~~~~~~-~~l~~~~-~d-~~v~iwd~~~~~~~~   88 (179)
                      ....+++.+.+..++.+-..          +..  . +.........+++.|. +.|+.+. .. +.|...++.......
T Consensus       160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~  239 (386)
T 3v65_B          160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI  239 (386)
T ss_dssp             CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred             CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEE
Confidence            45678888766566665411          111  1 2223345678899987 6555443 34 678888876443333


Q ss_pred             eecCCCCCeEEEEEeeCCCEEEEe-ccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEe
Q 038439           89 TFRGHMNEKNFVGLTVNSEYIACG-SESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN  167 (179)
Q Consensus        89 ~~~~~~~~v~~~~~~~~~~~~~~~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  167 (179)
                      ...........++++|++..|+.+ ...+.|..+|+............            ......+++ ..+..+++-.
T Consensus       240 ~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~------------~~~P~giav-~~~~ly~td~  306 (386)
T 3v65_B          240 IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG------------LPHPFAITV-FEDSLYWTDW  306 (386)
T ss_dssp             EECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS------------CSSEEEEEE-ETTEEEEEET
T ss_pred             EEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC------------CCCceEEEE-ECCEEEEeeC
Confidence            333334457899999876655544 55678999998754322221110            223556666 3444455555


Q ss_pred             CCCcEEEEe
Q 038439          168 SQGTIKVLV  176 (179)
Q Consensus       168 ~dg~i~iwd  176 (179)
                      ..+.|..++
T Consensus       307 ~~~~V~~~~  315 (386)
T 3v65_B          307 HTKSINSAN  315 (386)
T ss_dssp             TTTEEEEEE
T ss_pred             CCCeEEEEE
Confidence            566777665

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.39  E-value=0.012  Score=42.27  Aligned_cols=140  Identities=11%  Similarity=0.057  Sum_probs=76.4

Q ss_pred             ceeEEEEcCC--CCeEEEEeCCCc----------ee-eecccCceeEEEEeeC-CeEEEecCCC-----cEEEEecCCCc
Q 038439           25 NICCVKYNPG--SSNYIAKYQSTA----------PC-VHGHKKAVSYVKFLSN-DELASASTDS-----TLRLWDVKENL   85 (179)
Q Consensus        25 ~v~~~~~~~~--~~~~~~~~~~~~----------~~-~~~~~~~i~~~~~~~~-~~l~~~~~d~-----~v~iwd~~~~~   85 (179)
                      ....++|.|+  +..++++-...+          .. +.........+++.++ + |+.+...+     .+...+...+.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCe
Confidence            3678999984  336666532111          11 2222334678888888 6 44443311     12223322111


Q ss_pred             c-eeeecCCCCCeEEEEEee-CCCEEEEeccCCcEEEEEcCCCcccc-ccccCCCCCCCCcccCCcceEEEEEEccCCCe
Q 038439           86 P-VRTFRGHMNEKNFVGLTV-NSEYIACGSESNEVYVYHKEISKPVT-WHRFSSPDMDDTDEDAGSYFISAVCWKSDSPT  162 (179)
Q Consensus        86 ~-~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~v~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  162 (179)
                      . ...+. .......++++| ++.++++-..++.|+.+|..++.... ......           ......++|+|+++.
T Consensus       219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~-----------~~~~~~ia~dpdG~~  286 (433)
T 4hw6_A          219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT-----------KGSNFHIVWHPTGDW  286 (433)
T ss_dssp             CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC-----------CSSCEEEEECTTSSE
T ss_pred             ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC-----------CCCcccEEEeCCCCE
Confidence            1 01111 123346688999 67666666677889999988665422 221111           112246999999996


Q ss_pred             EEEEe-CCCcEEEEee
Q 038439          163 MLTAN-SQGTIKVLVL  177 (179)
Q Consensus       163 l~~~~-~dg~i~iwd~  177 (179)
                      |+.+. ..+.|..+++
T Consensus       287 LYvad~~~~~I~~~~~  302 (433)
T 4hw6_A          287 AYIIYNGKHCIYRVDY  302 (433)
T ss_dssp             EEEEETTTTEEEEEEB
T ss_pred             EEEEeCCCCEEEEEeC
Confidence            55554 4678888775

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.38  E-value=0.0032  Score=47.72  Aligned_cols=110  Identities=10%  Similarity=0.018  Sum_probs=66.9

Q ss_pred             EEEEee-C-CeEEEecCCC-----------cEEEEecCCCcce--eeecC-CCCCeEEEEEeeCCCEEEEecc-CCcEEE
Q 038439           58 YVKFLS-N-DELASASTDS-----------TLRLWDVKENLPV--RTFRG-HMNEKNFVGLTVNSEYIACGSE-SNEVYV  120 (179)
Q Consensus        58 ~~~~~~-~-~~l~~~~~d~-----------~v~iwd~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~~~~~~~-d~~v~v  120 (179)
                      .+++.+ + ..++.|+.+.           .+.+||..+.+..  ..+.. +......+++.++++.++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            455666 5 5666665432           5788998876532  22221 2223345677789999999884 567999


Q ss_pred             EEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEe-CC-----CcEEEEeec
Q 038439          121 YHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN-SQ-----GTIKVLVLA  178 (179)
Q Consensus       121 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-----g~i~iwd~~  178 (179)
                      ||+.+.+-........           ...-.+++..++++.++.|+ .+     ..+.+||..
T Consensus       270 yd~~t~~W~~~~~~~~-----------~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQV-----------ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             EEGGGTEEEECCCCSS-----------CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             ecCcCCceeECCCCCc-----------cccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence            9998765332211111           11112344557899888888 34     468889875

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.37  E-value=0.017  Score=40.31  Aligned_cols=140  Identities=5%  Similarity=-0.147  Sum_probs=77.8

Q ss_pred             CceeEEEEcCCCCeEEEEeC----------CCc--ee-eecccCceeEEEEeeC-CeEEEe-cCC-CcEEEEecCCCcce
Q 038439           24 ANICCVKYNPGSSNYIAKYQ----------STA--PC-VHGHKKAVSYVKFLSN-DELASA-STD-STLRLWDVKENLPV   87 (179)
Q Consensus        24 ~~v~~~~~~~~~~~~~~~~~----------~~~--~~-~~~~~~~i~~~~~~~~-~~l~~~-~~d-~~v~iwd~~~~~~~   87 (179)
                      .....+++.+.+..++.+-.          .+.  .. +.........+++.|. +.++.+ ... +.|...++......
T Consensus       116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~  195 (349)
T 3v64_C          116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR  195 (349)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE
Confidence            34567888876656665541          111  11 2223345678899987 555444 344 67888887643322


Q ss_pred             eeecCCCCCeEEEEEeeCCCEEEEe-ccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEE
Q 038439           88 RTFRGHMNEKNFVGLTVNSEYIACG-SESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTA  166 (179)
Q Consensus        88 ~~~~~~~~~v~~~~~~~~~~~~~~~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  166 (179)
                      ..+.........++++|++..|+.+ ...+.|..+|+............            ......+++ ..+..+++-
T Consensus       196 ~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~------------~~~P~giav-~~~~ly~td  262 (349)
T 3v64_C          196 IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG------------LPHPFAITV-FEDSLYWTD  262 (349)
T ss_dssp             ESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS------------CSSEEEEEE-ETTEEEEEE
T ss_pred             EEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC------------CCCceEEEE-ECCEEEEec
Confidence            2222334457889999876665544 45678999998754322211110            223455666 334444444


Q ss_pred             eCCCcEEEEe
Q 038439          167 NSQGTIKVLV  176 (179)
Q Consensus       167 ~~dg~i~iwd  176 (179)
                      ...+.|..++
T Consensus       263 ~~~~~V~~~~  272 (349)
T 3v64_C          263 WHTKSINSAN  272 (349)
T ss_dssp             TTTTEEEEEE
T ss_pred             CCCCeEEEEE
Confidence            4556666655

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.33  E-value=0.03  Score=42.36  Aligned_cols=162  Identities=4%  Similarity=-0.082  Sum_probs=97.2

Q ss_pred             ccEEEEEcCCceeEEeec--CCCceeEEEEcCCCCeEEEEeCCCcee-------------eecccCceeEEEEeeC-C-e
Q 038439            4 GKVKVWCTRQEASVLNID--MKANICCVKYNPGSSNYIAKYQSTAPC-------------VHGHKKAVSYVKFLSN-D-E   66 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~~~~~~~~-~-~   66 (179)
                      +.|+..++.+.+....+.  .-..+..++|++.+..++.+......+             +.........+++.+. + +
T Consensus        15 ~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~L   94 (628)
T 4a0p_A           15 ADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNL   94 (628)
T ss_dssp             TEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEE
T ss_pred             CcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEE
Confidence            567777877654433333  334688999999876777765111111             2212234567888765 4 4


Q ss_pred             EEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEec--cCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439           67 LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGS--ESNEVYVYHKEISKPVTWHRFSSPDMDDTDE  144 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~  144 (179)
                      +++-...+.|.+.++........+...-.....+++.|...+|+...  ..+.|...++...........          
T Consensus        95 Y~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~----------  164 (628)
T 4a0p_A           95 YWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPN----------  164 (628)
T ss_dssp             EEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS----------
T ss_pred             EEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECC----------
Confidence            45556678899999875433223333445678999999655555444  256777777765443222211          


Q ss_pred             cCCcceEEEEEEccCCCeEEEEeC-CCcEEEEeec
Q 038439          145 DAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVLA  178 (179)
Q Consensus       145 ~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~  178 (179)
                         ......++++++++.|+.+.. .+.|..+|+.
T Consensus       165 ---~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~d  196 (628)
T 4a0p_A          165 ---VGRANGLTIDYAKRRLYWTDLDTNLIESSNML  196 (628)
T ss_dssp             ---CSSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             ---CCCcceEEEccccCEEEEEECCCCEEEEEcCC
Confidence               345788999987766666554 5677777653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.30  E-value=0.037  Score=42.87  Aligned_cols=164  Identities=8%  Similarity=0.080  Sum_probs=97.6

Q ss_pred             cEEEEEcCCceeEEeec--------CCCceeEEEEcCCCCeEEEEeCCC--------cee--eec-------ccCceeEE
Q 038439            5 KVKVWCTRQEASVLNID--------MKANICCVKYNPGSSNYIAKYQST--------APC--VHG-------HKKAVSYV   59 (179)
Q Consensus         5 ~i~vwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~~--------~~~--~~~-------~~~~i~~~   59 (179)
                      -|.+||..+++......        ....|.++...++|...+.+-..+        ..+  +..       ....|.++
T Consensus       283 Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i  362 (795)
T 4a2l_A          283 DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCI  362 (795)
T ss_dssp             CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEE
T ss_pred             hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEE
Confidence            46677766655432211        135699999999985555442111        111  111       13457788


Q ss_pred             EEeeCCeEEEecCCCcEEEEecCCCcceeeecC--------CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccc
Q 038439           60 KFLSNDELASASTDSTLRLWDVKENLPVRTFRG--------HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTW  131 (179)
Q Consensus        60 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~  131 (179)
                      ...+++.|..|+.++-|..||..+++...-...        ....|.++...++++.|..|+.++-|..+|.++++....
T Consensus       363 ~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~  442 (795)
T 4a2l_A          363 VEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENF  442 (795)
T ss_dssp             EECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             EECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEe
Confidence            766666677788887899999876543221111        135688888888888456667667799999887654322


Q ss_pred             cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                       ......       .....|.++...+++++.+ |+.+ -+.+||..
T Consensus       443 -~~~~~~-------l~~~~v~~i~~d~~g~lwi-gt~~-Gl~~~~~~  479 (795)
T 4a2l_A          443 -NQRNSQ-------LVNENVYAILPDGEGNLWL-GTLS-ALVRFNPE  479 (795)
T ss_dssp             -CTTTSC-------CSCSCEEEEEECSSSCEEE-EESS-CEEEEETT
T ss_pred             -ecCCCC-------cCCCeeEEEEECCCCCEEE-EecC-ceeEEeCC
Confidence             111000       0145688898888877554 4444 47777753

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.25  E-value=0.008  Score=41.54  Aligned_cols=124  Identities=9%  Similarity=0.081  Sum_probs=74.6

Q ss_pred             ccCceeEEEEeeC-CeEEEec-CCCcEEEEecCCCccee-eecC----CC--CCeEEEEE---eeCCCEEEEec------
Q 038439           52 HKKAVSYVKFLSN-DELASAS-TDSTLRLWDVKENLPVR-TFRG----HM--NEKNFVGL---TVNSEYIACGS------  113 (179)
Q Consensus        52 ~~~~i~~~~~~~~-~~l~~~~-~d~~v~iwd~~~~~~~~-~~~~----~~--~~v~~~~~---~~~~~~~~~~~------  113 (179)
                      ...--.+++|.+. +.|..++ ..+.|..||...+.... .+..    ..  ..+..+.|   .|+++++++..      
T Consensus        11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~   90 (334)
T 2p9w_A           11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN   90 (334)
T ss_dssp             TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred             cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence            3334457889886 6665555 68999999987553322 2221    11  13568899   68887777543      


Q ss_pred             -------cCCcEEEEEcC---CCccccccccCCCCCC-CCcccCCcceEEEEEEccCCCeEEEEeCC-CcEEEE
Q 038439          114 -------ESNEVYVYHKE---ISKPVTWHRFSSPDMD-DTDEDAGSYFISAVCWKSDSPTMLTANSQ-GTIKVL  175 (179)
Q Consensus       114 -------~d~~v~vwd~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~iw  175 (179)
                             .++.|..+|+.   +++.+....+...... ....+........++..++|+..++++.. +.|...
T Consensus        91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV  164 (334)
T 2p9w_A           91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARV  164 (334)
T ss_dssp             TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEE
T ss_pred             ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEE
Confidence                   26779999999   7777654443211000 00000002358889999999988877766 554443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.24  E-value=0.012  Score=38.34  Aligned_cols=137  Identities=13%  Similarity=0.102  Sum_probs=72.4

Q ss_pred             CceeEEEEcCCCCeEEEEeCCCcee-eec----------ccCce--------eEEEEeeCCeEEEecCCCcEEEEecCCC
Q 038439           24 ANICCVKYNPGSSNYIAKYQSTAPC-VHG----------HKKAV--------SYVKFLSNDELASASTDSTLRLWDVKEN   84 (179)
Q Consensus        24 ~~v~~~~~~~~~~~~~~~~~~~~~~-~~~----------~~~~i--------~~~~~~~~~~l~~~~~d~~v~iwd~~~~   84 (179)
                      ..+..++|+|+| .|+++ ..++.. ...          -...|        .++.|.|++.|..+ .|+.|.-++..+.
T Consensus        41 ~~~~~laf~P~G-~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~  117 (236)
T 1tl2_A           41 SNFKFLFLSPGG-ELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQS  117 (236)
T ss_dssp             TTCSEEEECTTS-CEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCS
T ss_pred             ccceeEEECCCc-cEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcC
Confidence            467899999988 56665 333322 111          11233        67888888555444 5688887775432


Q ss_pred             cce------eee-cCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEc
Q 038439           85 LPV------RTF-RGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWK  157 (179)
Q Consensus        85 ~~~------~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  157 (179)
                      ..-      ..+ ...=..+..+.+.|+|.+.++.  |+.++-....++....-....     ......+-.....+.|.
T Consensus       118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~-----~~~g~~g~~~yr~l~f~  190 (236)
T 1tl2_A          118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARA-----TKIGQGGWDTFKFLFFS  190 (236)
T ss_dssp             TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHC-----EEEESSSGGGEEEEEEC
T ss_pred             CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCccccccc-----ceeccCCcceEEEEEEC
Confidence            111      111 1111357889999999888776  776543222211110000000     00000002344557799


Q ss_pred             cCCCeEEEEeCCCcE
Q 038439          158 SDSPTMLTANSQGTI  172 (179)
Q Consensus       158 ~~~~~l~~~~~dg~i  172 (179)
                      +++...++.  +|.+
T Consensus       191 ~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          191 SVGTLFGVQ--GGKF  203 (236)
T ss_dssp             TTSCEEEEE--TTEE
T ss_pred             CCCcEEEEe--CCeE
Confidence            998877666  6644

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.16  E-value=0.046  Score=41.26  Aligned_cols=163  Identities=8%  Similarity=-0.005  Sum_probs=93.6

Q ss_pred             CccEEEEEcCCce--eEEeecCCCceeEEEEcCCCCeEEEEeCCCcee--------------eecccCceeEEEEeeC-C
Q 038439            3 YGKVKVWCTRQEA--SVLNIDMKANICCVKYNPGSSNYIAKYQSTAPC--------------VHGHKKAVSYVKFLSN-D   65 (179)
Q Consensus         3 d~~i~vwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~i~~~~~~~~-~   65 (179)
                      .+.|+..++....  .......-..+..++|++.+..++.+-.....+              +.........+++.+. +
T Consensus        17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~   96 (619)
T 3s94_A           17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   96 (619)
T ss_dssp             SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT
T ss_pred             cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC
Confidence            4567777776543  222333455688999999776676664111111              2222245678888885 4


Q ss_pred             -eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc--CCcEEEEEcCCCccccccccCCCCCCCC
Q 038439           66 -ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE--SNEVYVYHKEISKPVTWHRFSSPDMDDT  142 (179)
Q Consensus        66 -~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--d~~v~vwd~~~~~~~~~~~~~~~~~~~~  142 (179)
                       .+++-...+.|.+.++........+.........+++.|.+.+++....  .+.|...++............       
T Consensus        97 ~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~-------  169 (619)
T 3s94_A           97 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE-------  169 (619)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS-------
T ss_pred             EEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCC-------
Confidence             5555566789999998754332333234445678999997555554442  456666666543322211110       


Q ss_pred             cccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEee
Q 038439          143 DEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVL  177 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~  177 (179)
                           -...+.+++++++..|+.+.. .+.|..+|+
T Consensus       170 -----~~~P~Glald~~~~~LY~aD~~~~~I~~~~~  200 (619)
T 3s94_A          170 -----IYWPNGLTLDYEEQKLYWADAKLNFIHKSNL  200 (619)
T ss_dssp             -----CSSEEEEEEETTTTEEEEEETTTCCEEEESS
T ss_pred             -----CCCCcEEEEEccCCEEEEEeCCCCeEEEecC
Confidence                 335788999987666665543 566777665

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.15  E-value=0.037  Score=39.90  Aligned_cols=173  Identities=9%  Similarity=0.086  Sum_probs=99.9

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe---------CCCcee--eeccc----CceeEEEEeeC-Ce
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY---------QSTAPC--VHGHK----KAVSYVKFLSN-DE   66 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------~~~~~~--~~~~~----~~i~~~~~~~~-~~   66 (179)
                      ..++.|+|+++.+.++.+.....|.--.|-.+...-+++.         ....|+  +..|.    ..|..-..+++ ..
T Consensus        85 g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW  164 (494)
T 1bpo_A           85 GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKW  164 (494)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSE
T ss_pred             CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCe
Confidence            3578999999999999998888898888866652333333         233444  44332    34545555555 54


Q ss_pred             EEEec-------CCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCC-----CEEEEecc---CCcEEEEEcCCC-cccc
Q 038439           67 LASAS-------TDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNS-----EYIACGSE---SNEVYVYHKEIS-KPVT  130 (179)
Q Consensus        67 l~~~~-------~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~---d~~v~vwd~~~~-~~~~  130 (179)
                      ++..+       -.|.+.+|..+.+ .-+.+.+|.....  .+-.+|     ..+..+..   .+.+++-++... ....
T Consensus       165 ~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~--~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~  241 (494)
T 1bpo_A          165 LLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFA--QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ  241 (494)
T ss_dssp             EEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEE--EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCC
T ss_pred             EEEEeecccCCcccceEEEeecccc-ccchheeeeeeeE--EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCC
Confidence            43222       2467889988754 4556666654332  222222     12332322   278888888543 1101


Q ss_pred             ccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          131 WHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      .+.-...+..... +.......++..++....++.-+.-|.+++||+++
T Consensus       242 ~f~kk~vdv~fpp-e~~~DFPvamqvs~kygviyviTK~G~i~lyDleT  289 (494)
T 1bpo_A          242 PFPKKAVDVFFPP-EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET  289 (494)
T ss_dssp             CCCCEEEECCCCT-TSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT
T ss_pred             CccceeeeeeCCc-ccccCceeEEEecccCCEEEEEecCceEEEEeccc
Confidence            1100000000000 11144567789999999999999999999999875

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.14  E-value=0.042  Score=40.27  Aligned_cols=140  Identities=6%  Similarity=-0.024  Sum_probs=79.6

Q ss_pred             eeEEEEcC-CCCeEEEEeCC----------Ccee--e-ec---ccCceeEEEE-------eeC-CeEEEecCCC------
Q 038439           26 ICCVKYNP-GSSNYIAKYQS----------TAPC--V-HG---HKKAVSYVKF-------LSN-DELASASTDS------   74 (179)
Q Consensus        26 v~~~~~~~-~~~~~~~~~~~----------~~~~--~-~~---~~~~i~~~~~-------~~~-~~l~~~~~d~------   74 (179)
                      ...|+|.| ++.+|+++...          ...+  + ..   .......++|       .++ ..|+.+...+      
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            56899998 35567776521          1112  1 11   1224678899       888 6566555443      


Q ss_pred             -cEEEEecCC-Ccce-----eeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcC-------CCcc------c----
Q 038439           75 -TLRLWDVKE-NLPV-----RTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKE-------ISKP------V----  129 (179)
Q Consensus        75 -~v~iwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~-------~~~~------~----  129 (179)
                       .|.+.+... +...     ..+... .....++++|+ +.++++-..++.|..+|+.       ++..      .    
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             ceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence             255665333 1221     122211 22356788995 5556666678889999997       4443      0    


Q ss_pred             --cccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEE-eCCCcEEEEee
Q 038439          130 --TWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTA-NSQGTIKVLVL  177 (179)
Q Consensus       130 --~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~  177 (179)
                        ......           .......++|+|+++.|+.+ +....|+.++.
T Consensus       300 ~~~l~~~~-----------~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          300 FKQLFTIA-----------DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             EEEEEECS-----------SSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             cceeEecC-----------CCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence              001110           03346789999999965554 45677888654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.10  E-value=0.032  Score=38.24  Aligned_cols=142  Identities=6%  Similarity=-0.135  Sum_probs=79.8

Q ss_pred             CceeEEEEcCCCCeEEEEeC----------CCcee---eecccCceeEEEEeeC-CeEEEecC-C-CcEEEEecCCCcce
Q 038439           24 ANICCVKYNPGSSNYIAKYQ----------STAPC---VHGHKKAVSYVKFLSN-DELASAST-D-STLRLWDVKENLPV   87 (179)
Q Consensus        24 ~~v~~~~~~~~~~~~~~~~~----------~~~~~---~~~~~~~i~~~~~~~~-~~l~~~~~-d-~~v~iwd~~~~~~~   87 (179)
                      ..+..+++.+.+..++.+-.          .++..   +.........+++.|. +.++.+.. . +.|...++.. ...
T Consensus        77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~  155 (316)
T 1ijq_A           77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDI  155 (316)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCE
T ss_pred             CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCe
Confidence            34678888875556665531          11111   2223345678889987 65555443 2 6788888753 333


Q ss_pred             eee-cCCCCCeEEEEEeeCCCEEEEe-ccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEE
Q 038439           88 RTF-RGHMNEKNFVGLTVNSEYIACG-SESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLT  165 (179)
Q Consensus        88 ~~~-~~~~~~v~~~~~~~~~~~~~~~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  165 (179)
                      ..+ ...-.....++++|++..|+.+ ...+.|..+|+..............          ......+++. .+..+++
T Consensus       156 ~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~----------~~~P~giav~-~~~ly~~  224 (316)
T 1ijq_A          156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR----------LAHPFSLAVF-EDKVFWT  224 (316)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTT----------TSSEEEEEEE-TTEEEEE
T ss_pred             EEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCc----------cCCcEEEEEE-CCEEEEE
Confidence            333 2234567899999876666554 4567899999875332221111000          2234566664 3444555


Q ss_pred             EeCCCcEEEEee
Q 038439          166 ANSQGTIKVLVL  177 (179)
Q Consensus       166 ~~~dg~i~iwd~  177 (179)
                      -...+.|..++.
T Consensus       225 d~~~~~V~~~~~  236 (316)
T 1ijq_A          225 DIINEAIFSANR  236 (316)
T ss_dssp             ETTTTEEEEEET
T ss_pred             ECCCCeEEEEeC
Confidence            555667777764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.09  E-value=0.0078  Score=46.04  Aligned_cols=72  Identities=6%  Similarity=-0.127  Sum_probs=43.2

Q ss_pred             ceeEEEEeeC-CeEEEecC-C-CcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEE-EEeccCCcEEEEEcCCC
Q 038439           55 AVSYVKFLSN-DELASAST-D-STLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI-ACGSESNEVYVYHKEIS  126 (179)
Q Consensus        55 ~i~~~~~~~~-~~l~~~~~-d-~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~d~~v~vwd~~~~  126 (179)
                      ....+++.|. +.|+.+.. . +.|.++++........+.........|+|+|++..| ++-...+.|..+|+...
T Consensus       497 ~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~  572 (699)
T 1n7d_A          497 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  572 (699)
T ss_dssp             CCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred             CcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence            3467788886 55544432 2 677777765332222222223446679999875554 45556778999998753

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.97  E-value=0.045  Score=37.72  Aligned_cols=141  Identities=8%  Similarity=0.027  Sum_probs=78.7

Q ss_pred             CCceeEEEEcCCCCeEEEEeCCCcee-------------eecccCceeEEEEeeCCeEEEecCCCcEEEEecCCCcceee
Q 038439           23 KANICCVKYNPGSSNYIAKYQSTAPC-------------VHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRT   89 (179)
Q Consensus        23 ~~~v~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~   89 (179)
                      ...+..+.+.|++ .+++++..+..+             -......+..+.+.+++.++.++.++.+.+.+...++.-..
T Consensus       162 ~~~~~~~~~~~~~-~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~  240 (327)
T 2xbg_A          162 IGVMRNLNRSPSG-EYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGE  240 (327)
T ss_dssp             CCCEEEEEECTTS-CEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECC
T ss_pred             CcceEEEEEcCCC-cEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEe
Confidence            4568899999987 566655222221             11234567788887774455556678777764222322222


Q ss_pred             ecC----CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEE
Q 038439           90 FRG----HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLT  165 (179)
Q Consensus        90 ~~~----~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  165 (179)
                      +..    ....+..+.+.+++..++++. ++.+ .+....++--........        . ...+..+.|.+++ .+++
T Consensus       241 ~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~--------~-~~~~~~v~~~~~~-~~~~  308 (327)
T 2xbg_A          241 LLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKK--------V-PSNFYKILFFSPD-QGFI  308 (327)
T ss_dssp             CBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTT--------S-SSCCCEEEEEETT-EEEE
T ss_pred             ccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCC--------C-CCCeEEEEEECCC-ceEE
Confidence            221    123478888988877766655 6665 344444443322221100        0 2346777787554 4667


Q ss_pred             EeCCCcEEEEe
Q 038439          166 ANSQGTIKVLV  176 (179)
Q Consensus       166 ~~~dg~i~iwd  176 (179)
                      ++.+|.|.-++
T Consensus       309 ~G~~G~i~~~~  319 (327)
T 2xbg_A          309 LGQKGILLRYV  319 (327)
T ss_dssp             ECSTTEEEEEC
T ss_pred             EcCCceEEEEc
Confidence            77788877665

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.97  E-value=0.007  Score=39.36  Aligned_cols=110  Identities=9%  Similarity=0.048  Sum_probs=62.6

Q ss_pred             CceeEEEEeeCCeEEEecCCCcEEEEecCCCcce------eeecC-CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCC
Q 038439           54 KAVSYVKFLSNDELASASTDSTLRLWDVKENLPV------RTFRG-HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEIS  126 (179)
Q Consensus        54 ~~i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~------~~~~~-~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~  126 (179)
                      ..++.++|+|++.|... .++.+.-.+..+....      ..+-. .-.....+.|.|+|.+.++  .||.|+-++..+.
T Consensus        41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~  117 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQS  117 (236)
T ss_dssp             TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCS
T ss_pred             ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcC
Confidence            46789999999445444 6777666665442211      11100 0011367889999988877  5698877775442


Q ss_pred             ccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEE
Q 038439          127 KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIK  173 (179)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  173 (179)
                      ..-.-... ..    ......-..+..+.+.|+|.+.++.  |+.++
T Consensus       118 ~~~~Wl~~-a~----~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly  157 (236)
T 1tl2_A          118 DTDNWIAR-AT----EVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY  157 (236)
T ss_dssp             TTCCHHHH-SE----EEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             CCCceecc-cc----EeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence            22111100 00    0000002467899999999977666  77653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.86  E-value=0.11  Score=40.39  Aligned_cols=145  Identities=8%  Similarity=0.014  Sum_probs=86.5

Q ss_pred             CCceeEEEEcCCCCeEEEEe---------CCCcee-ee-c--------ccCceeEEEEeeCCe-EEEecCCCcEEEEecC
Q 038439           23 KANICCVKYNPGSSNYIAKY---------QSTAPC-VH-G--------HKKAVSYVKFLSNDE-LASASTDSTLRLWDVK   82 (179)
Q Consensus        23 ~~~v~~~~~~~~~~~~~~~~---------~~~~~~-~~-~--------~~~~i~~~~~~~~~~-l~~~~~d~~v~iwd~~   82 (179)
                      ...|.++...++|...+.+.         ..++.. +. .        ....|.++...+++. |..|+.++-+..+|..
T Consensus       356 ~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~  435 (795)
T 4a2l_A          356 DNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRN  435 (795)
T ss_dssp             CSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred             CCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCC
Confidence            34589999998885555442         111111 21 1        134677887766655 7777777779999988


Q ss_pred             CCcceeeecC-----CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEc
Q 038439           83 ENLPVRTFRG-----HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWK  157 (179)
Q Consensus        83 ~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  157 (179)
                      +++. ..+..     ....|.++...++|++.+... . -+..||..+++.........+.      ......|.++...
T Consensus       436 ~~~~-~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~i~~d  506 (795)
T 4a2l_A          436 SGQV-ENFNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQRSFTTIEKEKDGT------PVVSKQITTLFRD  506 (795)
T ss_dssp             TCCE-EEECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEEETTTTEEEECCBCTTCC------BCCCCCEEEEEEC
T ss_pred             CCcE-EEeecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCCCeEEEcccccccc------ccCCceEEEEEEC
Confidence            7653 33321     245688888888887655443 4 4888998876543221110000      0013568889888


Q ss_pred             cCCCeEEEEeCCCcEEEEeec
Q 038439          158 SDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       158 ~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ++|+..+. +. +-+..||..
T Consensus       507 ~~g~lWig-t~-~Gl~~~~~~  525 (795)
T 4a2l_A          507 SHKRLWIG-GE-EGLSVFKQE  525 (795)
T ss_dssp             TTCCEEEE-ES-SCEEEEEEE
T ss_pred             CCCCEEEE-eC-CceEEEeCC
Confidence            88875554 44 447777753

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.83  E-value=0.15  Score=41.53  Aligned_cols=160  Identities=14%  Similarity=0.070  Sum_probs=93.0

Q ss_pred             ccEEEEEcCCceeEEeec--CCCceeEEE---EcCCCCeEEEEe----C-------CCcee-------------eecccC
Q 038439            4 GKVKVWCTRQEASVLNID--MKANICCVK---YNPGSSNYIAKY----Q-------STAPC-------------VHGHKK   54 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~--~~~~v~~~~---~~~~~~~~~~~~----~-------~~~~~-------------~~~~~~   54 (179)
                      ++|++.|..+.+.+..++  ....+.+++   |..+...++++|    .       .++.+             -...++
T Consensus       807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g  886 (1158)
T 3ei3_A          807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG  886 (1158)
T ss_dssp             EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred             EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence            468899988888776665  444555554   444444677777    1       11111             122345


Q ss_pred             ceeEEEEeeCCeEEEecCCCcEEEEecCCCccee-eecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCC--Cccccc
Q 038439           55 AVSYVKFLSNDELASASTDSTLRLWDVKENLPVR-TFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEI--SKPVTW  131 (179)
Q Consensus        55 ~i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~--~~~~~~  131 (179)
                      ++++++-.. ++|++|- ...+++|++...+.++ ....... +..+.....++++++|..-..|.+...+.  ++....
T Consensus       887 ~v~al~~~~-g~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~-i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~  963 (1158)
T 3ei3_A          887 AVYSMVEFN-GKLLASI-NSTVRLYEWTTEKELRTECNHYNN-IMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEI  963 (1158)
T ss_dssp             CEEEEEEET-TEEEEEE-TTEEEEEEECTTSCEEEEEEECCC-SCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEE
T ss_pred             cCEEEeeeC-CEEEEEc-CCEEEEEECCCCceEEEEeecccc-EEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEE
Confidence            666665332 5555544 4789999998765444 1111111 33334444678899998877777765443  222221


Q ss_pred             cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      .. ..          ....++++.+-.+ ..++.+..+|.+.+....
T Consensus       964 a~-D~----------~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~  998 (1158)
T 3ei3_A          964 AR-DF----------NPNWMSAVEILDD-DNFLGAENAFNLFVCQKD  998 (1158)
T ss_dssp             EE-CC----------SCBCEEEEEEEET-TEEEEEETTSEEEEEEEC
T ss_pred             Ee-ec----------ccccEEEEEEEcc-CcEEEEcCCCcEEEEecC
Confidence            11 10          1556888887644 477889999999988654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.73  E-value=0.13  Score=39.73  Aligned_cols=162  Identities=10%  Similarity=0.118  Sum_probs=90.2

Q ss_pred             ccEEEEEcCCceeEEee---c-CCCceeEEEEcCCCCeEEEEe---------CCCcee-ee---cccCceeEEEEeeCCe
Q 038439            4 GKVKVWCTRQEASVLNI---D-MKANICCVKYNPGSSNYIAKY---------QSTAPC-VH---GHKKAVSYVKFLSNDE   66 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~---~-~~~~v~~~~~~~~~~~~~~~~---------~~~~~~-~~---~~~~~i~~~~~~~~~~   66 (179)
                      +-|..||..+++...-.   . ....|.++...+++...+.+.         .+++.. +.   .....|.++...+++.
T Consensus       383 ~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~  462 (781)
T 3v9f_A          383 GGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK  462 (781)
T ss_dssp             SCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE
T ss_pred             CcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC
Confidence            34666665543322111   1 235688999888885444431         112221 21   1235677777666666


Q ss_pred             EEEecCCCcEEEEecCCCcceeeecCC-----CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCC
Q 038439           67 LASASTDSTLRLWDVKENLPVRTFRGH-----MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDD  141 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~  141 (179)
                      +..++. +-+..+|..+++........     ...|.++...++|++.+.....| +..+|..+++... +....     
T Consensus       463 lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~-~~~~~-----  534 (781)
T 3v9f_A          463 IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRK-FNQYE-----  534 (781)
T ss_dssp             EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEE-ECTTT-----
T ss_pred             EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEE-ccCCC-----
Confidence            666666 56888998765543322211     35688888888887665443344 7778887654322 21110     


Q ss_pred             CcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          142 TDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       142 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                         .-....|.++...++|+..+ ++.+|-+..||.
T Consensus       535 ---~l~~~~i~~i~~d~~g~lWi-~T~~Glv~~~d~  566 (781)
T 3v9f_A          535 ---GFCSNTINQIYRSSKGQMWL-ATGEGLVCFPSA  566 (781)
T ss_dssp             ---TCSCSCEEEEEECTTSCEEE-EETTEEEEESCT
T ss_pred             ---CCCCCeeEEEEECCCCCEEE-EECCCceEEECC
Confidence               00145688888888887544 444664466664

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.63  E-value=0.047  Score=38.14  Aligned_cols=104  Identities=12%  Similarity=-0.029  Sum_probs=58.8

Q ss_pred             CceeEEEEeeCCeEEEecCCCcEEEEecCCCc-ceeeec---CCCCCeEEEEEeeC---CCEEEEecc----C----CcE
Q 038439           54 KAVSYVKFLSNDELASASTDSTLRLWDVKENL-PVRTFR---GHMNEKNFVGLTVN---SEYIACGSE----S----NEV  118 (179)
Q Consensus        54 ~~i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~~~~~~~----d----~~v  118 (179)
                      ..-..++|.|++.++.+..++.|+++| .+++ .+..+.   ........++++|+   +..|+++..    +    ..|
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            445788999995566666679999887 3443 222211   12345788999997   445544432    2    567


Q ss_pred             EEEEcCCCc--c---ccccc-cCCCCCCCCcccCCcceEEEEEEccCCCeEEEEe
Q 038439          119 YVYHKEISK--P---VTWHR-FSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN  167 (179)
Q Consensus       119 ~vwd~~~~~--~---~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  167 (179)
                      ..++.....  .   ...+. ....       .  ......+.|.|+|.++++.+
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~~-------~--~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPGA-------Y--IHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEECC-------S--SCCCCCEEECTTSCEEEECC
T ss_pred             EEEEECCCCcCcCccEEEEEcCCCC-------C--CcCCceEEECCCCcEEEEEC
Confidence            777766431  1   00011 1000       0  12245689999998666543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.54  E-value=0.13  Score=37.18  Aligned_cols=160  Identities=13%  Similarity=0.126  Sum_probs=97.0

Q ss_pred             CccEEEEEcCC-ceeEEeecC-----CCceeEEEEcCCCCeEEEEe---------------CCCcee---eecccCceeE
Q 038439            3 YGKVKVWCTRQ-EASVLNIDM-----KANICCVKYNPGSSNYIAKY---------------QSTAPC---VHGHKKAVSY   58 (179)
Q Consensus         3 d~~i~vwd~~~-~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~---------------~~~~~~---~~~~~~~i~~   58 (179)
                      +..|+-|++.. ..+++.++.     ...|-.-..+++.+.++.+|               ...+.+   +.+|-+....
T Consensus       124 ~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~  203 (494)
T 1bpo_A          124 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQ  203 (494)
T ss_dssp             SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEE
T ss_pred             CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEE
Confidence            56789999864 456666652     45677788889998888887               111111   6666555444


Q ss_pred             EEEeeC----CeEEEecC---CCcEEEEecCCC---c------ceeeecC---CCCCeEEEEEeeCCCEEEEeccCCcEE
Q 038439           59 VKFLSN----DELASAST---DSTLRLWDVKEN---L------PVRTFRG---HMNEKNFVGLTVNSEYIACGSESNEVY  119 (179)
Q Consensus        59 ~~~~~~----~~l~~~~~---d~~v~iwd~~~~---~------~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~d~~v~  119 (179)
                      +....+    ..+..+..   .+.++|-++...   .      .+..+..   ......++..++.-..++.-+.-|.++
T Consensus       204 ~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~  283 (494)
T 1bpo_A          204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIH  283 (494)
T ss_dssp             EECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEE
Confidence            433222    23444433   268888888542   1      1111111   123455788888878888889999999


Q ss_pred             EEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEE
Q 038439          120 VYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV  174 (179)
Q Consensus       120 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  174 (179)
                      +||++++.++...+..            ...|...+-..+..=++.....|.|.-
T Consensus       284 lyDleTgt~i~~nrIs------------~~~iF~t~~~~~~~Gi~~Vnr~GqVl~  326 (494)
T 1bpo_A          284 LYDLETGTCIYMNRIS------------GETIFVTAPHEATAGIIGVNRKGQVLS  326 (494)
T ss_dssp             EEETTTCCEEEEEECC------------SSCEEEEEEETTTTEEEEEETTCEEEE
T ss_pred             EEecccceeeeeeccc------------CCceEEecccCCCCcEEEEccCceEEE
Confidence            9999999998776654            334444444444444555556665543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.51  E-value=0.13  Score=36.63  Aligned_cols=142  Identities=6%  Similarity=-0.174  Sum_probs=80.1

Q ss_pred             CceeEEEEcCCCCeEEEEeCC----------Ccee---eecccCceeEEEEeeC-CeEEEecC--CCcEEEEecCCCcce
Q 038439           24 ANICCVKYNPGSSNYIAKYQS----------TAPC---VHGHKKAVSYVKFLSN-DELASAST--DSTLRLWDVKENLPV   87 (179)
Q Consensus        24 ~~v~~~~~~~~~~~~~~~~~~----------~~~~---~~~~~~~i~~~~~~~~-~~l~~~~~--d~~v~iwd~~~~~~~   87 (179)
                      ..+..+++.+.+..++.+-..          +...   +.........|++.|. +.|+.+..  .+.|...++......
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~  238 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  238 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred             CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence            456788888755566665411          1111   2223334678889887 66655542  367888887654333


Q ss_pred             eeecCCCCCeEEEEEeeCCCEEEEe-ccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEE
Q 038439           88 RTFRGHMNEKNFVGLTVNSEYIACG-SESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTA  166 (179)
Q Consensus        88 ~~~~~~~~~v~~~~~~~~~~~~~~~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  166 (179)
                      ..+.........+++++++..|+.+ ...+.|..+|+..............          ......++.. .+..+++-
T Consensus       239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~----------l~~P~gl~v~-~~~lywtd  307 (400)
T 3p5b_L          239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR----------LAHPFSLAVF-EDKVFWTD  307 (400)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSST----------TSSEEEEEEE-TTEEEEEE
T ss_pred             EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCC----------CCCCEEEEEe-CCEEEEec
Confidence            3333334567899999877666655 4567899999875433222211100          1234455552 33444444


Q ss_pred             eCCCcEEEEe
Q 038439          167 NSQGTIKVLV  176 (179)
Q Consensus       167 ~~dg~i~iwd  176 (179)
                      ...+.|..+|
T Consensus       308 ~~~~~V~~~~  317 (400)
T 3p5b_L          308 IINEAIFSAN  317 (400)
T ss_dssp             SSSCSEEEEE
T ss_pred             CCCCeEEEEE
Confidence            4556676665

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.48  E-value=0.2  Score=38.74  Aligned_cols=160  Identities=12%  Similarity=0.062  Sum_probs=88.0

Q ss_pred             ccEEEEEcCCceeEEeec----CCCceeEEEEcCCCCeEEEEe--------CCCcee-eec-c-----cCceeEEEEeeC
Q 038439            4 GKVKVWCTRQEASVLNID----MKANICCVKYNPGSSNYIAKY--------QSTAPC-VHG-H-----KKAVSYVKFLSN   64 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~--------~~~~~~-~~~-~-----~~~i~~~~~~~~   64 (179)
                      +-|..+|..+++.. .+.    ....|.++...+++...+++.        ..++.. +.. .     ...|.++...++
T Consensus       427 ~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~  505 (781)
T 3v9f_A          427 GNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSE  505 (781)
T ss_dssp             EEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTT
T ss_pred             CCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCCEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCC
Confidence            34566666555432 222    235689999888884444432        111111 111 1     346778876666


Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecC----CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCC
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRG----HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMD  140 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~  140 (179)
                      +.+..|+..+-+..+|..+++ ...+..    ....|.++...++|.+.++.. .|.+..||..+++... +.....   
T Consensus       506 g~lWigt~~~Gl~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~-~~~~~g---  579 (781)
T 3v9f_A          506 GRFWIGTFGGGVGIYTPDMQL-VRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQV-FQRKEG---  579 (781)
T ss_dssp             CCEEEEESSSCEEEECTTCCE-EEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEE-ECGGGT---
T ss_pred             CCEEEEEcCCCEEEEeCCCCe-EEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEE-ccccCC---
Confidence            666666664457778876654 333321    234678888888888665544 6655888887664321 111100   


Q ss_pred             CCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          141 DTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       141 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                           -....|.++...++|++.+ ++.+| |..|+.
T Consensus       580 -----l~~~~i~~i~~d~~g~lW~-~t~~G-l~~~~~  609 (781)
T 3v9f_A          580 -----LPNTHIRAISEDKNGNIWA-STNTG-ISCYIT  609 (781)
T ss_dssp             -----CSCCCCCEEEECSSSCEEE-ECSSC-EEEEET
T ss_pred             -----CCCceEEEEEECCCCCEEE-EcCCc-eEEEEC
Confidence                 0033567777777777444 44555 555553

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.48  E-value=0.062  Score=39.39  Aligned_cols=113  Identities=13%  Similarity=0.171  Sum_probs=66.6

Q ss_pred             ceeEEEEee-C-CeE-EEecCCCcEEEEecCCCcceeeecCC---CCCeEEEEE-------eeCCCEEEEeccCC-----
Q 038439           55 AVSYVKFLS-N-DEL-ASASTDSTLRLWDVKENLPVRTFRGH---MNEKNFVGL-------TVNSEYIACGSESN-----  116 (179)
Q Consensus        55 ~i~~~~~~~-~-~~l-~~~~~d~~v~iwd~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~~~~~~~d~-----  116 (179)
                      ....|+|.| + +.| ++-...+.|++.|+..+.........   ......++|       ++++++++++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            356889998 4 444 44444567899998876654433321   235789999       99999666665443     


Q ss_pred             --cEEEEEcCC-Ccccc-c--cccCCCCCCCCcccCCcceEEEEEEccCC-CeEEEEeCCCcEEEEeec
Q 038439          117 --EVYVYHKEI-SKPVT-W--HRFSSPDMDDTDEDAGSYFISAVCWKSDS-PTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       117 --~v~vwd~~~-~~~~~-~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~  178 (179)
                        .|.+++... +.... .  ..+..           ......++.+|++ .++++-..++.|..+|+.
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-----------~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~  277 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAA-----------YKQCNGATIHPINGELYFNSYEKGQVFRLDLV  277 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEE-----------ESCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred             CceEEEEecCCCCceeecccceeecc-----------CCCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence              266666443 22210 0  00100           1234567889954 545556667889998864

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.45  E-value=0.11  Score=42.99  Aligned_cols=175  Identities=9%  Similarity=0.072  Sum_probs=96.2

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe---------CCCcee--eecc----cCceeEEEEeeC-Ce
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY---------QSTAPC--VHGH----KKAVSYVKFLSN-DE   66 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------~~~~~~--~~~~----~~~i~~~~~~~~-~~   66 (179)
                      ..++.|+|+++.+.++.+....+|.--.|-.....-+++.         ....|+  +..|    ...|..-..+++ ..
T Consensus        85 g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW  164 (1630)
T 1xi4_A           85 GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKW  164 (1630)
T ss_pred             CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCe
Confidence            3578888888888888888888888888866553334443         233444  3333    344555555666 44


Q ss_pred             EEE-e------cCCCcEEEEecCCCcceeeecCCCCCeEEEEEe--eCC-CEEEEec---cCCcEEEEEcCCC-cccccc
Q 038439           67 LAS-A------STDSTLRLWDVKENLPVRTFRGHMNEKNFVGLT--VNS-EYIACGS---ESNEVYVYHKEIS-KPVTWH  132 (179)
Q Consensus        67 l~~-~------~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~-~~~~~~~---~d~~v~vwd~~~~-~~~~~~  132 (179)
                      ++. |      .-.|.+.+|..+.+ .-+.+.+|......+...  +.. ..+..+.   ..+.++|-++... .....+
T Consensus       165 ~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f  243 (1630)
T 1xi4_A          165 LLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF  243 (1630)
T ss_pred             EEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCC
Confidence            432 2      23578889987753 234445554333222221  111 1222111   1267888887543 111111


Q ss_pred             ccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          133 RFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      .-...+........ ......+..++....++..+.-|.+++||+.|
T Consensus       244 ~kk~~~~~~~~~~~-~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t  289 (1630)
T 1xi4_A          244 PKKAVDVFFPPEAQ-NDFPVAMQISEKHDVVFLITKYGYIHLYDLET  289 (1630)
T ss_pred             ccccccccCCcccc-cCcceEEEeccccCEEEEEecCceEEEEeccc
Confidence            11100000000011 33456788888888999999999999999875

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.33  E-value=0.15  Score=35.60  Aligned_cols=111  Identities=13%  Similarity=0.165  Sum_probs=70.5

Q ss_pred             CceeEEEEeeC-C-------eEEEecC---CCcEEEEecC-CCcceeeecC-------CCCCeEEEEE--eeC-CC-EEE
Q 038439           54 KAVSYVKFLSN-D-------ELASAST---DSTLRLWDVK-ENLPVRTFRG-------HMNEKNFVGL--TVN-SE-YIA  110 (179)
Q Consensus        54 ~~i~~~~~~~~-~-------~l~~~~~---d~~v~iwd~~-~~~~~~~~~~-------~~~~v~~~~~--~~~-~~-~~~  110 (179)
                      +.++.+..-|. .       +.++...   +.+|++|++. ....+..+..       ....+..+++  +|. +. +++
T Consensus        68 g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yaf  147 (355)
T 3amr_A           68 GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAM  147 (355)
T ss_dssp             SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEE
T ss_pred             CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEE
Confidence            56677776665 2       3333333   5789999773 2223444421       1144566777  664 44 577


Q ss_pred             EeccCCcEEEEEcCC-------CccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          111 CGSESNEVYVYHKEI-------SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       111 ~~~~d~~v~vwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      +...+|.+..|++..       .+.+..+.+             ...+..+...+....|+.+-.+.-|..++.
T Consensus       148 V~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-------------gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da  208 (355)
T 3amr_A          148 VTGKEGEFEQYELKADKNGYISGKKVRAFKM-------------NSQTEGMAADDEYGRLYIAEEDEAIWKFSA  208 (355)
T ss_dssp             EECSSSEEEEEEEEECTTSCEEEEEEEEEEC-------------SSCEEEEEEETTTTEEEEEETTTEEEEEEC
T ss_pred             EECCCCeEEEEEEEeCCCCcccceEEEEecC-------------CCCcceEEEcCCCCeEEEecccceEEEEeC
Confidence            888899999999842       344555554             446778888888888999988866555553

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.26  E-value=0.077  Score=37.02  Aligned_cols=104  Identities=13%  Similarity=0.072  Sum_probs=57.5

Q ss_pred             CceeEEEEeeCCeEEEecCCCcEEEEecCCCcc--eeeec---CCCCCeEEEEEeeC---CCEEEEecc-C-----CcEE
Q 038439           54 KAVSYVKFLSNDELASASTDSTLRLWDVKENLP--VRTFR---GHMNEKNFVGLTVN---SEYIACGSE-S-----NEVY  119 (179)
Q Consensus        54 ~~i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~---~~~~~v~~~~~~~~---~~~~~~~~~-d-----~~v~  119 (179)
                      ..-..++|.|++.++.+...+.|++++  .++.  +..+.   ........++++|+   +..|+++.. .     +.|.
T Consensus        31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            345688899984355556668888888  3332  11111   12346788999998   555554433 2     5677


Q ss_pred             EEEcCCCccc---cccc-cCCCCCCCCcccCCcceEEEEEEccCCCeEEEE
Q 038439          120 VYHKEISKPV---TWHR-FSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTA  166 (179)
Q Consensus       120 vwd~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  166 (179)
                      .++.......   ..+. .....    . .  ......++|.|+|.+.++.
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~----~-~--~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARP----H-G--LHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCT----T-C--CCCCCCEEECTTSCEEEEC
T ss_pred             EEEeCCCCcCceEEEEEeCCCCC----C-C--CcCCceEEECCCCCEEEEE
Confidence            7887643210   0111 11000    0 0  1223578999999765553

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.16  E-value=0.18  Score=34.69  Aligned_cols=140  Identities=5%  Similarity=-0.154  Sum_probs=77.6

Q ss_pred             ceeEEEEcCCCCeEEEEeC----------CCce--e-eecccCceeEEEEeeC-CeEEEecC--CCcEEEEecCCCccee
Q 038439           25 NICCVKYNPGSSNYIAKYQ----------STAP--C-VHGHKKAVSYVKFLSN-DELASAST--DSTLRLWDVKENLPVR   88 (179)
Q Consensus        25 ~v~~~~~~~~~~~~~~~~~----------~~~~--~-~~~~~~~i~~~~~~~~-~~l~~~~~--d~~v~iwd~~~~~~~~   88 (179)
                      .+..+++.+.+..++.+-.          .+..  . ..........+++.|. +.++.+..  .+.|...++.......
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~  159 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI  159 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE
Confidence            4556888875556665531          1111  1 2233344578899987 76665552  5678888876433222


Q ss_pred             eecCCCCCeEEEEEeeCCCEEEEe-ccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEe
Q 038439           89 TFRGHMNEKNFVGLTVNSEYIACG-SESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN  167 (179)
Q Consensus        89 ~~~~~~~~v~~~~~~~~~~~~~~~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  167 (179)
                      .+...-.....++++|++..|+.+ ...+.|..+|+..........  ..          ......+++.. +..+++-.
T Consensus       160 ~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~--~~----------~~~P~glav~~-~~lywtd~  226 (318)
T 3sov_A          160 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK--GS----------LPHPFALTLFE-DILYWTDW  226 (318)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SC----------CSCEEEEEEET-TEEEEEET
T ss_pred             EEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec--CC----------CCCceEEEEeC-CEEEEEec
Confidence            223334456889999976665544 556889999987533222111  00          22345566542 33444444


Q ss_pred             CCCcEEEEee
Q 038439          168 SQGTIKVLVL  177 (179)
Q Consensus       168 ~dg~i~iwd~  177 (179)
                      ..+.|..++.
T Consensus       227 ~~~~V~~~~~  236 (318)
T 3sov_A          227 STHSILACNK  236 (318)
T ss_dssp             TTTEEEEEET
T ss_pred             CCCeEEEEEC
Confidence            4566766664

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=95.93  E-value=0.43  Score=37.25  Aligned_cols=105  Identities=6%  Similarity=-0.167  Sum_probs=65.7

Q ss_pred             CceeEEEEcCCCCeEEEEeCC----------Ccee---eecccCceeEEEEeeC-CeEEEecC--CCcEEEEecCCCcce
Q 038439           24 ANICCVKYNPGSSNYIAKYQS----------TAPC---VHGHKKAVSYVKFLSN-DELASAST--DSTLRLWDVKENLPV   87 (179)
Q Consensus        24 ~~v~~~~~~~~~~~~~~~~~~----------~~~~---~~~~~~~i~~~~~~~~-~~l~~~~~--d~~v~iwd~~~~~~~   87 (179)
                      ..+..|++.+.+.+|+.+-..          +...   +.........|++.|. +.|+.+..  .+.|.+.++......
T Consensus       471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~  550 (791)
T 3m0c_C          471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  550 (791)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred             CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE
Confidence            446788888877666666511          1111   2233345678999987 66665543  267888887654433


Q ss_pred             eeecCCCCCeEEEEEeeCCCEEEEe-ccCCcEEEEEcCCCcc
Q 038439           88 RTFRGHMNEKNFVGLTVNSEYIACG-SESNEVYVYHKEISKP  128 (179)
Q Consensus        88 ~~~~~~~~~v~~~~~~~~~~~~~~~-~~d~~v~vwd~~~~~~  128 (179)
                      ..+.........|++.+.+..|+.+ ...+.|...++.....
T Consensus       551 ~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~  592 (791)
T 3m0c_C          551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR  592 (791)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce
Confidence            3344344567899999876666555 4467899999865443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.79  E-value=0.3  Score=34.25  Aligned_cols=153  Identities=12%  Similarity=0.094  Sum_probs=82.1

Q ss_pred             CCccEEEEEcCCce-eEEeec--C------CCceeEEEEcC--CCC-eEEEEeCC--------------Ccee-----ee
Q 038439            2 AYGKVKVWCTRQEA-SVLNID--M------KANICCVKYNP--GSS-NYIAKYQS--------------TAPC-----VH   50 (179)
Q Consensus         2 ~d~~i~vwd~~~~~-~~~~~~--~------~~~v~~~~~~~--~~~-~~~~~~~~--------------~~~~-----~~   50 (179)
                      .+|.|.++|..+.. ....+.  .      .-....+.+.+  ++. +++++-..              +...     +.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            47899999987421 112222  1      13577777765  343 45555310              1111     11


Q ss_pred             c-ccCceeEEEEeeC-CeEEEecC-----------------CCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEE
Q 038439           51 G-HKKAVSYVKFLSN-DELASAST-----------------DSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIAC  111 (179)
Q Consensus        51 ~-~~~~i~~~~~~~~-~~l~~~~~-----------------d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  111 (179)
                      + .-...+.+.+.++ +++++...                 .+.|.-+|.  ++ +..+...-...+.++|+||++.+++
T Consensus       161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYv  237 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYI  237 (355)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEE
T ss_pred             cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEE
Confidence            1 1234678888888 55555431                 133444443  33 2333233345688999999988766


Q ss_pred             e-ccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEcc-CCCeEEEEe
Q 038439          112 G-SESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKS-DSPTMLTAN  167 (179)
Q Consensus       112 ~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~  167 (179)
                      + +..+.|..|++.....+...+.-..          ....-.++..+ +|++.+++.
T Consensus       238 adt~~~~I~~~~~~~~g~l~~~~~~~~----------~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          238 AELLAHKIHVYEKHANWTLTPLRVLSF----------DTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEEEEEEC----------SSEEEEEEECTTTCCEEEEEE
T ss_pred             EeCCCCeEEEEEECCCCcEecCEEEeC----------CCCCceEEEeCCCCcEEEEec
Confidence            5 4578899999874222211111000          34567788888 588766554

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.79  E-value=0.044  Score=40.75  Aligned_cols=81  Identities=6%  Similarity=0.002  Sum_probs=50.3

Q ss_pred             eEEEEEeeCCCEEEEec-cCCcEEEEEcCCCccccccccCCC-CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEE
Q 038439           97 KNFVGLTVNSEYIACGS-ESNEVYVYHKEISKPVTWHRFSSP-DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV  174 (179)
Q Consensus        97 v~~~~~~~~~~~~~~~~-~d~~v~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  174 (179)
                      ...+..+|||+++++++ .+..+.++|.+.......-.+..+ .......+. .......+|.++|+...+.--|..|.-
T Consensus       325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G~aYTtlfidSqvvk  403 (638)
T 3sbq_A          325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRGNAYTTLFIDSQVVK  403 (638)
T ss_dssp             CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred             CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCCceEeeeeecceEEE
Confidence            45688999999977655 488999999885322110000000 000000011 456788999999966666667999999


Q ss_pred             Eeec
Q 038439          175 LVLA  178 (179)
Q Consensus       175 wd~~  178 (179)
                      |++.
T Consensus       404 Wni~  407 (638)
T 3sbq_A          404 WNME  407 (638)
T ss_dssp             EEHH
T ss_pred             Eecc
Confidence            9974

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.63  E-value=0.32  Score=33.44  Aligned_cols=137  Identities=10%  Similarity=0.032  Sum_probs=73.2

Q ss_pred             CceeEEEEcCCCCeEEEEeCC---------Ccee---eecccCceeEEEEeeC-CeEEEecCCCcEEEEec--CCCccee
Q 038439           24 ANICCVKYNPGSSNYIAKYQS---------TAPC---VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDV--KENLPVR   88 (179)
Q Consensus        24 ~~v~~~~~~~~~~~~~~~~~~---------~~~~---~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~--~~~~~~~   88 (179)
                      ..+..+.+.+++ .+++++..         ++..   .......+..+.+.|+ ..++.+......+-.|-  .+-+.+.
T Consensus       122 ~~~~~i~~~~~~-~~~~~~~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~  200 (327)
T 2xbg_A          122 GSPRLIKALGNG-SAEMITNVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN  200 (327)
T ss_dssp             SCEEEEEEEETT-EEEEEETTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE
T ss_pred             CCeEEEEEECCC-CEEEEeCCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC
Confidence            456778877666 55555521         2222   2233456788888888 55555544443444442  2222221


Q ss_pred             eecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC
Q 038439           89 TFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS  168 (179)
Q Consensus        89 ~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  168 (179)
                        ......+..+.+.++++.+++ +.+|.+.+.+...++..........       .. ...+..+.+.+++..++++. 
T Consensus       201 --~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~-------~~-~~~~~~v~~~~~~~~~~~g~-  268 (327)
T 2xbg_A          201 --RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLR-------RN-SVGFLDLAYRTPNEVWLAGG-  268 (327)
T ss_dssp             --CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTS-------SC-CSCEEEEEESSSSCEEEEES-
T ss_pred             --CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcc-------cC-CcceEEEEecCCCEEEEEeC-
Confidence              223456788889898876654 4567777664222332222111100       00 23578888988777666554 


Q ss_pred             CCcEE
Q 038439          169 QGTIK  173 (179)
Q Consensus       169 dg~i~  173 (179)
                      +|.+.
T Consensus       269 ~g~i~  273 (327)
T 2xbg_A          269 AGALL  273 (327)
T ss_dssp             TTCEE
T ss_pred             CCeEE
Confidence            55553

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.47  E-value=0.35  Score=33.78  Aligned_cols=108  Identities=14%  Similarity=0.066  Sum_probs=58.8

Q ss_pred             ccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcc--eeee----cCCCCCeEEEEEeeC---CCEEEEe---ccCCcE
Q 038439           52 HKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLP--VRTF----RGHMNEKNFVGLTVN---SEYIACG---SESNEV  118 (179)
Q Consensus        52 ~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~--~~~~----~~~~~~v~~~~~~~~---~~~~~~~---~~d~~v  118 (179)
                      .-..-..|+|.|+ ..+++-...+.|++++...++.  +..+    .........++++|+   +..|++.   ..++.|
T Consensus        30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v  109 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI  109 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred             CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence            3445678999999 6555554488999888655443  2111    122456788999995   3344332   234455


Q ss_pred             EEEEcCCCcc----c----cccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEe
Q 038439          119 YVYHKEISKP----V----TWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN  167 (179)
Q Consensus       119 ~vwd~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  167 (179)
                      .-|.+..+..    +    ..+. ..+.     ..  .+....+.|.|+|.+.++.+
T Consensus       110 ~R~~~~~~~~~~~~~~~~~~i~~-~~p~-----~~--~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          110 VRMLYDEKKPSGEQLGAPDTVFR-GIPK-----GV--IHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             EEEEBCTTSCTTCCBCCCEEEEE-EECC-----CS--SCCCCCEEECTTSCEEEECB
T ss_pred             EEEEeCCCCcccccCCCcEEEEE-cCCC-----CC--CccCccccCCCCCCEEEEEC
Confidence            5565554211    0    0000 0000     01  22345689999998666644

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.45  E-value=0.81  Score=38.31  Aligned_cols=133  Identities=14%  Similarity=0.116  Sum_probs=77.0

Q ss_pred             CccEEEEEcCC-ceeEEeec-C----CCceeEEEEcCCCCeEEEEe---CC------------Ccee---eecccCceeE
Q 038439            3 YGKVKVWCTRQ-EASVLNID-M----KANICCVKYNPGSSNYIAKY---QS------------TAPC---VHGHKKAVSY   58 (179)
Q Consensus         3 d~~i~vwd~~~-~~~~~~~~-~----~~~v~~~~~~~~~~~~~~~~---~~------------~~~~---~~~~~~~i~~   58 (179)
                      +..|.-|++.. ..+++.++ |    ...|-.-.-+++.+.++.+|   ..            .+.+   +.||-+....
T Consensus       124 ~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~  203 (1630)
T 1xi4_A          124 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQ  203 (1630)
T ss_pred             CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhhe
Confidence            46788888863 34444443 2    35577777788888888877   11            1111   4555554444


Q ss_pred             EEEeeC----CeEEEecC---CCcEEEEecCCC---ccee------eecC---CCCCeEEEEEeeCCCEEEEeccCCcEE
Q 038439           59 VKFLSN----DELASAST---DSTLRLWDVKEN---LPVR------TFRG---HMNEKNFVGLTVNSEYIACGSESNEVY  119 (179)
Q Consensus        59 ~~~~~~----~~l~~~~~---d~~v~iwd~~~~---~~~~------~~~~---~~~~v~~~~~~~~~~~~~~~~~d~~v~  119 (179)
                      +.....    ..+..+..   .+.++|-++...   .+..      .+..   ......++..++.-..++.-+.-|.++
T Consensus       204 ~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~  283 (1630)
T 1xi4_A          204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIH  283 (1630)
T ss_pred             eccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEE
Confidence            433211    22222222   267888887542   1111      1111   122334677777777788888899999


Q ss_pred             EEEcCCCccccccccC
Q 038439          120 VYHKEISKPVTWHRFS  135 (179)
Q Consensus       120 vwd~~~~~~~~~~~~~  135 (179)
                      ++|+.++.++...+..
T Consensus       284 ~~d~~t~~~i~~~ris  299 (1630)
T 1xi4_A          284 LYDLETGTCIYMNRIS  299 (1630)
T ss_pred             EEecccchhhhhcccc
Confidence            9999999887665543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=95.42  E-value=0.1  Score=39.59  Aligned_cols=84  Identities=8%  Similarity=-0.082  Sum_probs=48.4

Q ss_pred             cEEEEecCCCcceeee--cCCCCC-eEEEEEeeCCCEEEEeccC-----------CcEEEEEcCCCccccccccCCCCCC
Q 038439           75 TLRLWDVKENLPVRTF--RGHMNE-KNFVGLTVNSEYIACGSES-----------NEVYVYHKEISKPVTWHRFSSPDMD  140 (179)
Q Consensus        75 ~v~iwd~~~~~~~~~~--~~~~~~-v~~~~~~~~~~~~~~~~~d-----------~~v~vwd~~~~~~~~~~~~~~~~~~  140 (179)
                      .+.+||..+.+.....  ..+... -.++...|+++.++.|+.+           ..+.+||..+.+-........+   
T Consensus       433 ~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~---  509 (656)
T 1k3i_A          433 IITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIV---  509 (656)
T ss_dssp             EEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSC---
T ss_pred             EEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCc---
Confidence            5778887765433222  112222 2345567899999998864           4689999987653221111111   


Q ss_pred             CCcccCCcceEEEEEEccCCCeEEEEeC
Q 038439          141 DTDEDAGSYFISAVCWKSDSPTMLTANS  168 (179)
Q Consensus       141 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~  168 (179)
                             ........+.|+++.++.|+.
T Consensus       510 -------R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          510 -------RVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             -------CCTTEEEEECTTSCEEEEECC
T ss_pred             -------cccccHhhcCCCcEEEecCCC
Confidence                   111123445689999999885

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.16  E-value=0.61  Score=33.83  Aligned_cols=105  Identities=10%  Similarity=-0.007  Sum_probs=54.3

Q ss_pred             ceeEEEEeeC-CeEEEecCCCcEEEEecCCCcc--eeeecC------CCCCeEEEEEeeC---CCEEEEecc--------
Q 038439           55 AVSYVKFLSN-DELASASTDSTLRLWDVKENLP--VRTFRG------HMNEKNFVGLTVN---SEYIACGSE--------  114 (179)
Q Consensus        55 ~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~--~~~~~~------~~~~v~~~~~~~~---~~~~~~~~~--------  114 (179)
                      .-..|+|.|+ +++++-...+.|++++..+++.  +..+..      .......|+|+|+   +..|++...        
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            4467888888 5444433334677776544432  122211      2345678999995   445444332        


Q ss_pred             -----CCcEEEEEcCCCc--c---ccccc-cCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC
Q 038439          115 -----SNEVYVYHKEISK--P---VTWHR-FSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS  168 (179)
Q Consensus       115 -----d~~v~vwd~~~~~--~---~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  168 (179)
                           ...|.-+++....  .   ...+. +..       ..  .+....++|.|+|.+.++.+.
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-------~~--~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-------SK--DHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-------CS--SCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCC-------CC--CCCCCeEeECCCCeEEEEECC
Confidence                 1345555553321  1   11111 110       01  235788999999987766543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.00  E-value=0.49  Score=31.86  Aligned_cols=91  Identities=11%  Similarity=0.074  Sum_probs=46.7

Q ss_pred             CcEEEEecCCCccee--eecCCCCCeEEEEEeeCCCEEEEeccC-----CcEEEEEcCCCccccccccCCCCCCCCcccC
Q 038439           74 STLRLWDVKENLPVR--TFRGHMNEKNFVGLTVNSEYIACGSES-----NEVYVYHKEISKPVTWHRFSSPDMDDTDEDA  146 (179)
Q Consensus        74 ~~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~d-----~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  146 (179)
                      ..+.+||+.+.+-..  .+.........+  ..++++++.|+.+     ..+.+||+.+.+-.........         
T Consensus       173 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~---------  241 (302)
T 2xn4_A          173 STVECYNATTNEWTYIAEMSTRRSGAGVG--VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC---------  241 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC---------
T ss_pred             cEEEEEeCCCCcEEECCCCccccccccEE--EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc---------
Confidence            357888987654322  111111111222  2367777787764     4688999987653322111110         


Q ss_pred             CcceEEEEEEccCCCeEEEEeCCC-----cEEEEeec
Q 038439          147 GSYFISAVCWKSDSPTMLTANSQG-----TIKVLVLA  178 (179)
Q Consensus       147 ~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~  178 (179)
                       ......+.  .+++.++.|+.++     .+.+||++
T Consensus       242 -r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~  275 (302)
T 2xn4_A          242 -RRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPT  275 (302)
T ss_dssp             -CBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred             -cccCeEEE--ECCEEEEECCcCCCcccccEEEEcCC
Confidence             11111122  2667777777653     48888875

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.98  E-value=0.49  Score=31.80  Aligned_cols=102  Identities=11%  Similarity=0.053  Sum_probs=51.2

Q ss_pred             CeEEEecCC-----CcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccC-----CcEEEEEcCCCcccccccc
Q 038439           65 DELASASTD-----STLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSES-----NEVYVYHKEISKPVTWHRF  134 (179)
Q Consensus        65 ~~l~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d-----~~v~vwd~~~~~~~~~~~~  134 (179)
                      ..++.|+.+     ..+.+||+.+.+-...-..............++..++.|+.+     ..+.+||+.+.+-......
T Consensus       161 ~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~  240 (301)
T 2vpj_A          161 VIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM  240 (301)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred             EEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCC
Confidence            455555543     457888887654322111111111111222367777777764     4689999987654322111


Q ss_pred             CCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCC-----CcEEEEeec
Q 038439          135 SSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQ-----GTIKVLVLA  178 (179)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~  178 (179)
                      ..+          ......+.+  +++.++.|+.+     ..+.+||++
T Consensus       241 p~~----------r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~  277 (301)
T 2vpj_A          241 TTP----------RCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPI  277 (301)
T ss_dssp             SSC----------CBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETT
T ss_pred             CCc----------ccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCC
Confidence            111          111112222  56677777665     357778765

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.94  E-value=0.035  Score=38.59  Aligned_cols=65  Identities=11%  Similarity=0.109  Sum_probs=43.1

Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCC-CCCeEEEEEe--e-CCCEEEEe-ccCCcEEEEEcCCCccc
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGH-MNEKNFVGLT--V-NSEYIACG-SESNEVYVYHKEISKPV  129 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~--~-~~~~~~~~-~~d~~v~vwd~~~~~~~  129 (179)
                      +.++.++.||.|.-.|..+|+.+-+++.. ..++....-.  + ++..++.. ..||.|..++..++...
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~   80 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK   80 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE
Confidence            57889999999999999999988887653 1222211100  1 22333343 57999999998887543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=94.86  E-value=0.64  Score=32.57  Aligned_cols=91  Identities=15%  Similarity=0.107  Sum_probs=55.0

Q ss_pred             CCcEEEEecCCCc----ceeeecCC-CCCeEEEEEeeCCCEEEEecc-----------------CCcEEEEEcCCCcccc
Q 038439           73 DSTLRLWDVKENL----PVRTFRGH-MNEKNFVGLTVNSEYIACGSE-----------------SNEVYVYHKEISKPVT  130 (179)
Q Consensus        73 d~~v~iwd~~~~~----~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~-----------------d~~v~vwd~~~~~~~~  130 (179)
                      +..+.+|++....    .+.++.+. -...+.+.+.++|+++++...                 .|.|.-+|.  ++...
T Consensus       138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~  215 (355)
T 3sre_A          138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRV  215 (355)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEE
T ss_pred             CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEE
Confidence            4567777765432    22334332 235788999999998777541                 233444443  22111


Q ss_pred             ccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEe-CCCcEEEEeec
Q 038439          131 WHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN-SQGTIKVLVLA  178 (179)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~  178 (179)
                      ...-             -...+.++|+||++.|+.+. ..+.|..|++.
T Consensus       216 ~~~~-------------l~~pNGia~spDg~~lYvadt~~~~I~~~~~~  251 (355)
T 3sre_A          216 VAEG-------------FDFANGINISPDGKYVYIAELLAHKIHVYEKH  251 (355)
T ss_dssp             EEEE-------------ESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             eecC-------------CcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence            1110             33578999999998877665 47789999874

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=94.34  E-value=1.6  Score=34.91  Aligned_cols=39  Identities=8%  Similarity=-0.125  Sum_probs=32.5

Q ss_pred             CeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccccc
Q 038439           96 EKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF  134 (179)
Q Consensus        96 ~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~  134 (179)
                      .+.++...++..++++-+.|+.+++|++.+++++....+
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL  275 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL  275 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence            456677777888999999999999999999988776544

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.10  E-value=0.66  Score=32.39  Aligned_cols=74  Identities=8%  Similarity=0.035  Sum_probs=43.2

Q ss_pred             CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccC---CCeEEEEeC--
Q 038439           94 MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD---SPTMLTANS--  168 (179)
Q Consensus        94 ~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~--  168 (179)
                      -.....++|.|+|+++++ ..++.|+++|. .++ ....... ..      .........++++|+   +..|+++..  
T Consensus        28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~-~~~~~~~-v~------~~g~~g~~gia~~pdf~~~g~lyv~~~~~   97 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGK-KLVASFD-VA------NVGEAGLLGLALHPEFPKKSWVYLYASYF   97 (354)
T ss_dssp             CSCEEEEEEEETTEEEEE-ETTTEEEEECS-SCE-EEEEECC-CC------CSTTCSEEEEEECTTTTTSCEEEEEEEEE
T ss_pred             CCCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCc-eEeeccc-ee------ecCCCceeeEEeCCCCCcCCEEEEEEecc
Confidence            445788999999985554 55699998873 443 1111111 00      001345789999997   555555443  


Q ss_pred             --C----CcEEEEee
Q 038439          169 --Q----GTIKVLVL  177 (179)
Q Consensus       169 --d----g~i~iwd~  177 (179)
                        +    +.|..|++
T Consensus        98 ~~~~~~~~~v~r~~~  112 (354)
T 3a9g_A           98 AEGGHIRNRVIRGRL  112 (354)
T ss_dssp             CGGGCEEEEEEEEEE
T ss_pred             CCCCCcceEEEEEEE
Confidence              2    45666654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=94.09  E-value=0.64  Score=32.37  Aligned_cols=74  Identities=7%  Similarity=0.107  Sum_probs=44.0

Q ss_pred             CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccC---CCeEEEEeCC-
Q 038439           94 MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD---SPTMLTANSQ-  169 (179)
Q Consensus        94 ~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d-  169 (179)
                      -.....++|.|+|+++++ ...+.|.+++  .++........ .     . .........++++|+   +..|+++... 
T Consensus        30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~-v-----~-~~g~~~p~gia~~pdf~~~g~lYv~~~~~   99 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELS-V-----Y-HRGESGLLGLALHPRFPQEPYVYAYRTVA   99 (352)
T ss_dssp             CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECC-C-----C-CSTTCSEEEEEECTTTTTSCEEEEEEEEC
T ss_pred             CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecce-E-----e-ecCCCCceeEEECCCCCCCCEEEEEEecC
Confidence            445689999999986555 5569999888  34321111111 0     0 001346789999998   5555554432 


Q ss_pred             -----CcEEEEee
Q 038439          170 -----GTIKVLVL  177 (179)
Q Consensus       170 -----g~i~iwd~  177 (179)
                           +.|..|++
T Consensus       100 ~~~~~~~v~r~~~  112 (352)
T 2ism_A          100 EGGLRNQVVRLRH  112 (352)
T ss_dssp             TTSSEEEEEEEEE
T ss_pred             CCCCccEEEEEEe
Confidence                 55666654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=94.00  E-value=1.5  Score=33.28  Aligned_cols=138  Identities=6%  Similarity=-0.164  Sum_probs=78.8

Q ss_pred             CceeEEEEcCCCCeEEEEeCC----------Cc--ee-eecccCceeEEEEeeC-CeEEEecC--CCcEEEEecCCCcce
Q 038439           24 ANICCVKYNPGSSNYIAKYQS----------TA--PC-VHGHKKAVSYVKFLSN-DELASAST--DSTLRLWDVKENLPV   87 (179)
Q Consensus        24 ~~v~~~~~~~~~~~~~~~~~~----------~~--~~-~~~~~~~i~~~~~~~~-~~l~~~~~--d~~v~iwd~~~~~~~   87 (179)
                      ..+..+++.+.+.+++.+-..          +.  .+ +...-.....+++.|. +.|+.+..  .+.|...++..... 
T Consensus        80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-  158 (628)
T 4a0p_A           80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-  158 (628)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-
T ss_pred             CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-
Confidence            346788888766566666411          11  11 2233344578899987 66665542  46777777764433 


Q ss_pred             eeecCCCCCeEEEEEeeCCCEEEEe-ccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEE
Q 038439           88 RTFRGHMNEKNFVGLTVNSEYIACG-SESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTA  166 (179)
Q Consensus        88 ~~~~~~~~~v~~~~~~~~~~~~~~~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  166 (179)
                      ..+-........+++++++..|+.+ ...+.|...|+..... ..+...            ......+++.. +..+++-
T Consensus       159 ~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~------------l~~P~glav~~-~~ly~tD  224 (628)
T 4a0p_A          159 TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD------------LPHPFGLTQYQ-DYIYWTD  224 (628)
T ss_dssp             EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC------------CSCEEEEEEET-TEEEEEE
T ss_pred             EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc------------CCCceEEEEEC-CEEEEec
Confidence            3332345567899999976666555 4567899999876443 221110            22345666654 3333333


Q ss_pred             eCCCcEEEEe
Q 038439          167 NSQGTIKVLV  176 (179)
Q Consensus       167 ~~dg~i~iwd  176 (179)
                      ...+.|...|
T Consensus       225 ~~~~~I~~~d  234 (628)
T 4a0p_A          225 WSRRSIERAN  234 (628)
T ss_dssp             TTTTEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            3456666665

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=93.80  E-value=0.28  Score=34.15  Aligned_cols=62  Identities=8%  Similarity=0.003  Sum_probs=38.6

Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCCCC-C------eEEEEEe-----eCCCEEEEeccCCcEEEEEcCCCc
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGHMN-E------KNFVGLT-----VNSEYIACGSESNEVYVYHKEISK  127 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~-~------v~~~~~~-----~~~~~~~~~~~d~~v~vwd~~~~~  127 (179)
                      +.+++++.++.+...|+++|+.+..+..... .      ..+....     ..+..++.+..+..+.+.+ ++++
T Consensus       112 g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~  185 (339)
T 2be1_A          112 EKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA  185 (339)
T ss_dssp             EEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEEEEEEEECEECC-TTSC
T ss_pred             CEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC
Confidence            6788999999999999999999888864311 0      0011110     1235677777677676666 4443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=93.77  E-value=1.7  Score=32.98  Aligned_cols=142  Identities=8%  Similarity=0.019  Sum_probs=82.3

Q ss_pred             CceeEEEEcCCCCeEEEEeCCCcee-------------eecccCceeEEEEeeC--CeEEEecCCCcEEEEecCCCccee
Q 038439           24 ANICCVKYNPGSSNYIAKYQSTAPC-------------VHGHKKAVSYVKFLSN--DELASASTDSTLRLWDVKENLPVR   88 (179)
Q Consensus        24 ~~v~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~   88 (179)
                      ..+.+++|.+.+..++.+-.....+             +.........+++.+.  +++.+-+..+.|.+.++.......
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~  428 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI  428 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE
Confidence            4578899998665666664111111             2222234567888764  455565667889999887543322


Q ss_pred             eecCCCCCeEEEEEeeCCCEEEEec--cCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEE
Q 038439           89 TFRGHMNEKNFVGLTVNSEYIACGS--ESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTA  166 (179)
Q Consensus        89 ~~~~~~~~v~~~~~~~~~~~~~~~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  166 (179)
                      .+...-...+.+++.|...+++...  ..+.|...++...... .+... .          -...+.+++.+++..|+.+
T Consensus       429 l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~-~l~~~-~----------l~~P~GlalD~~~~~LY~a  496 (619)
T 3s94_A          429 LISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV-VLVNT-S----------LGWPNGLALDYDEGKIYWG  496 (619)
T ss_dssp             EECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEECS-S----------CSCEEEEEEETTTTEEEEE
T ss_pred             EEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE-EEEeC-C----------CCCCeeeEEcccCCEEEEE
Confidence            3333445678999999744444433  2356666666543222 11110 0          3356788898876666665


Q ss_pred             eC-CCcEEEEee
Q 038439          167 NS-QGTIKVLVL  177 (179)
Q Consensus       167 ~~-dg~i~iwd~  177 (179)
                      .. .+.|..+++
T Consensus       497 D~~~~~I~~~~~  508 (619)
T 3s94_A          497 DAKTDKIEVMNT  508 (619)
T ss_dssp             ETTTTEEEEEES
T ss_pred             ECCCCEEEEEec
Confidence            54 456777665

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=93.56  E-value=1.3  Score=30.98  Aligned_cols=71  Identities=6%  Similarity=0.051  Sum_probs=43.3

Q ss_pred             eecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccC---CCeEEE
Q 038439           89 TFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD---SPTMLT  165 (179)
Q Consensus        89 ~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~  165 (179)
                      .+...-...+.|+|.|+|+++++--..|.|++++...++...........      ..+......++++|+   ..+|+.
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~------~~g~~GllGia~~Pdf~~~g~lYv   99 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVS------PSGEGGLLGIALSPDYASDHMVYA   99 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCC------CBTTBSEEEEEECTTHHHHCEEEE
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCcee------ecCCCCceeeEeccccccCCEEEE
Confidence            34334456789999999997777665899999887655432111111000      011456889999985   444544

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=93.49  E-value=1.2  Score=30.98  Aligned_cols=70  Identities=16%  Similarity=0.018  Sum_probs=39.4

Q ss_pred             ceeEEEEeeC-CeEEEecCCCcEEEEecCCCcc---eeee----cCCCCCeEEEEEeeC---CCEEEEec-c-------C
Q 038439           55 AVSYVKFLSN-DELASASTDSTLRLWDVKENLP---VRTF----RGHMNEKNFVGLTVN---SEYIACGS-E-------S  115 (179)
Q Consensus        55 ~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~---~~~~----~~~~~~v~~~~~~~~---~~~~~~~~-~-------d  115 (179)
                      .-..|+|.|+ +.++.+...+.|++++.. ++.   +..+    .........++++|+   +..|++.. .       .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            4567888888 525555667888888743 321   1111    112345678999995   44444432 2       2


Q ss_pred             CcEEEEEcCC
Q 038439          116 NEVYVYHKEI  125 (179)
Q Consensus       116 ~~v~vwd~~~  125 (179)
                      ..|..+++..
T Consensus        98 ~~v~r~~~~~  107 (353)
T 2g8s_A           98 TAVGYGRLSD  107 (353)
T ss_dssp             EEEEEEEECT
T ss_pred             eEEEEEEECC
Confidence            3466666643

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=93.29  E-value=1.2  Score=29.90  Aligned_cols=100  Identities=13%  Similarity=0.071  Sum_probs=49.3

Q ss_pred             CeEEEecCCC-----cEEEEecCCCcceee--ecCCCCCeEEEEEeeCCCEEEEeccC-------CcEEEEEcCCCcccc
Q 038439           65 DELASASTDS-----TLRLWDVKENLPVRT--FRGHMNEKNFVGLTVNSEYIACGSES-------NEVYVYHKEISKPVT  130 (179)
Q Consensus        65 ~~l~~~~~d~-----~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~d-------~~v~vwd~~~~~~~~  130 (179)
                      ..++.|+.++     .+.+||+.+.+-...  +....... ++. ..+++.++.|+.+       ..+.+||+.+.+-..
T Consensus       110 ~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~  187 (302)
T 2xn4_A          110 LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSV-GVG-VVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTY  187 (302)
T ss_dssp             EEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSC-EEE-EETTEEEEECCEETTTTEECCCEEEEETTTTEEEE
T ss_pred             EEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCc-eEE-EECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE
Confidence            4555555442     467888876543221  11111111 122 2367777777643       358899988765332


Q ss_pred             ccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCC-----CcEEEEeec
Q 038439          131 WHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQ-----GTIKVLVLA  178 (179)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~  178 (179)
                      .......          ......+.+  +++.++.|+.+     ..+.+||++
T Consensus       188 ~~~~p~~----------r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~  228 (302)
T 2xn4_A          188 IAEMSTR----------RSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPT  228 (302)
T ss_dssp             ECCCSSC----------CBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETT
T ss_pred             CCCCccc----------cccccEEEE--CCEEEEECCCCCCcccceEEEEeCC
Confidence            2111110          111111222  56777777654     357888865

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=93.20  E-value=1.3  Score=29.95  Aligned_cols=100  Identities=9%  Similarity=-0.023  Sum_probs=50.9

Q ss_pred             CeEEEecCC-----CcEEEEecCCCccee--eecCCCCCeEEEEEeeCCCEEEEeccC-----CcEEEEEcCCCcccccc
Q 038439           65 DELASASTD-----STLRLWDVKENLPVR--TFRGHMNEKNFVGLTVNSEYIACGSES-----NEVYVYHKEISKPVTWH  132 (179)
Q Consensus        65 ~~l~~~~~d-----~~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~d-----~~v~vwd~~~~~~~~~~  132 (179)
                      ..++.|+.+     ..+.+||+.+.+-..  .+.........+.  -+++.++.|+.+     ..+.+||+.+.+-....
T Consensus       170 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~  247 (308)
T 1zgk_A          170 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA  247 (308)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred             EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEECC
Confidence            555555543     458888887654221  1111111122222  267777777764     56899999876533221


Q ss_pred             ccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCC-----CcEEEEeec
Q 038439          133 RFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQ-----GTIKVLVLA  178 (179)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~  178 (179)
                      ....+          ......+.+  +++.++.|+.+     ..+.+||++
T Consensus       248 ~~p~~----------r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~  286 (308)
T 1zgk_A          248 PMKHR----------RSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPD  286 (308)
T ss_dssp             CCSSC----------CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETT
T ss_pred             CCCCC----------ccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCC
Confidence            11110          111111222  56777777653     357788865

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=93.17  E-value=1.3  Score=29.85  Aligned_cols=93  Identities=14%  Similarity=0.064  Sum_probs=46.6

Q ss_pred             CcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccC-----CcEEEEEcCCCccccccccCCCCCCCCcccCCc
Q 038439           74 STLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSES-----NEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGS  148 (179)
Q Consensus        74 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d-----~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (179)
                      ..+.+||+.+.+-...-.............-+++.++.|+.+     ..+.+||+.+.+-...-.....          .
T Consensus       169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~----------r  238 (306)
T 3ii7_A          169 NSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK----------G  238 (306)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC----------B
T ss_pred             ceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC----------c
Confidence            457888988754222111111111111122267777777653     4588999887653322111110          1


Q ss_pred             ceEEEEEEccCCCeEEEEeCC-----CcEEEEeec
Q 038439          149 YFISAVCWKSDSPTMLTANSQ-----GTIKVLVLA  178 (179)
Q Consensus       149 ~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~  178 (179)
                      .....+.+  +++.++.|+.+     ..+.+||+.
T Consensus       239 ~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~  271 (306)
T 3ii7_A          239 VTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTE  271 (306)
T ss_dssp             SCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETT
T ss_pred             cceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCC
Confidence            11122222  66777777754     467888865

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.02  E-value=1.8  Score=31.43  Aligned_cols=70  Identities=9%  Similarity=0.117  Sum_probs=41.2

Q ss_pred             CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccC---CCeEEEEe
Q 038439           94 MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD---SPTMLTAN  167 (179)
Q Consensus        94 ~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~  167 (179)
                      -...+.|+|.|+|+++++-...+.|++++..+++......+....    ........+..++|+|+   +..|+...
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~----~~~~g~~Gllgia~~Pdf~~~g~lYv~~   98 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIV----NDADGQNGLLGFAFHPDFKNNPYIYISG   98 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCC----CCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccc----cccCCCCceeEEEECCCcCcCCEEEEEE
Confidence            445689999999997776554457888876555432222121100    00011456889999995   55555544

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=92.70  E-value=1.5  Score=29.47  Aligned_cols=64  Identities=13%  Similarity=0.077  Sum_probs=33.7

Q ss_pred             CeEEEecCC------CcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc---------CCcEEEEEcCCCcc
Q 038439           65 DELASASTD------STLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE---------SNEVYVYHKEISKP  128 (179)
Q Consensus        65 ~~l~~~~~d------~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---------d~~v~vwd~~~~~~  128 (179)
                      ..++.|+.+      ..+.+||..+.+-...-..............+++.++.|+.         -..+.+||+.+.+-
T Consensus       103 ~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W  181 (306)
T 3ii7_A          103 KIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW  181 (306)
T ss_dssp             EEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEE
T ss_pred             EEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeE
Confidence            455566544      45888898875432211111111111112236777777764         34588999987643

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=92.21  E-value=1.8  Score=29.27  Aligned_cols=64  Identities=11%  Similarity=-0.005  Sum_probs=33.9

Q ss_pred             CeEEEecC-C-----CcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCC-----cEEEEEcCCCcc
Q 038439           65 DELASAST-D-----STLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESN-----EVYVYHKEISKP  128 (179)
Q Consensus        65 ~~l~~~~~-d-----~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~-----~v~vwd~~~~~~  128 (179)
                      ..++.|+. +     ..+.+||+.+.+-...-..........+...+++.++.|+.++     .+.+||+.+.+-
T Consensus       150 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  224 (315)
T 4asc_A          150 LVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKW  224 (315)
T ss_dssp             EEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred             EEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeE
Confidence            45556654 2     3688889876532211111111111112223677777777654     488899887643

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=92.07  E-value=1.8  Score=28.96  Aligned_cols=100  Identities=7%  Similarity=0.010  Sum_probs=50.7

Q ss_pred             CeEEEecCC-----CcEEEEecCCCccee--eecCCCCCeEEEEEeeCCCEEEEeccC-----CcEEEEEcCCCcccccc
Q 038439           65 DELASASTD-----STLRLWDVKENLPVR--TFRGHMNEKNFVGLTVNSEYIACGSES-----NEVYVYHKEISKPVTWH  132 (179)
Q Consensus        65 ~~l~~~~~d-----~~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~d-----~~v~vwd~~~~~~~~~~  132 (179)
                      ..++.|+.+     ..+.+||+.+.+-..  .+.......  .....+++.++.|+.+     ..+.+||+.+.+-...-
T Consensus       114 ~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~  191 (301)
T 2vpj_A          114 MIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGA--GLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT  191 (301)
T ss_dssp             EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSC--EEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC
T ss_pred             EEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccc--eEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCC
Confidence            455555533     357888887654322  221111111  1222367777777754     45889998876533221


Q ss_pred             ccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCC-----CcEEEEeec
Q 038439          133 RFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQ-----GTIKVLVLA  178 (179)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~  178 (179)
                      ....+          ......+.+  +++.++.|+.+     ..+.+||++
T Consensus       192 ~~p~~----------r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~  230 (301)
T 2vpj_A          192 PMATK----------RSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIR  230 (301)
T ss_dssp             CCSSC----------CBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETT
T ss_pred             CCCcc----------cccceEEEE--CCEEEEEeCCCCCcccceEEEEeCC
Confidence            11110          111112222  56667777664     457888865

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=91.94  E-value=4.5  Score=33.23  Aligned_cols=111  Identities=14%  Similarity=0.026  Sum_probs=65.6

Q ss_pred             ceeEEEEeeCCeEEEecCCCcEEEEecCCCcce--eeecCCCCCeEEEEEeeC------CCEEEEecc-CCcEEEEEcCC
Q 038439           55 AVSYVKFLSNDELASASTDSTLRLWDVKENLPV--RTFRGHMNEKNFVGLTVN------SEYIACGSE-SNEVYVYHKEI  125 (179)
Q Consensus        55 ~i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~------~~~~~~~~~-d~~v~vwd~~~  125 (179)
                      .|...+.+. .+++.++ .+.+..+.+..++..  ... .-...|.|+++.|.      +.++++|.. |+.++++++.+
T Consensus       515 ~I~~As~n~-~~vvva~-g~~l~~fel~~~~L~~~~~~-~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~  591 (1158)
T 3ei3_A          515 NISVASCNS-SQVVVAV-GRALYYLQIHPQELRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS  591 (1158)
T ss_dssp             CCCEEEECS-SEEEEEE-TTEEEEEEEETTEEEEEEEE-ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred             EEEEEEeCC-CEEEEEE-CCEEEEEEeeCCceeeeccc-CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence            344444332 3454444 567777777654322  121 22457899998763      468999986 99999999987


Q ss_pred             CccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          126 SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      .+.+....+....       . ...+.-+.+ ....+|..|-.||.+.-+.+
T Consensus       592 l~~~~~~~L~~~~-------~-p~si~l~~~-~~~~~L~igl~dG~l~~~~~  634 (1158)
T 3ei3_A          592 FELLHKEMLGGEI-------I-PRSILMTTF-ESSHYLLCALGDGALFYFGL  634 (1158)
T ss_dssp             CCEEEEEECCSSC-------C-EEEEEEEEE-TTEEEEEEEETTSEEEEEEE
T ss_pred             CCeEEEEECCCCC-------C-CcEEEEEEe-CCCcEEEEEeCCCeEEEEEE
Confidence            6666544442110       0 122222233 23467888888998766554

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=91.84  E-value=2.8  Score=30.57  Aligned_cols=51  Identities=8%  Similarity=0.031  Sum_probs=31.1

Q ss_pred             ceeEEEEeeC-C-eEEEecCCCcEEEEecCCC---cceeeec---------CCCCCeEEEEEeeC
Q 038439           55 AVSYVKFLSN-D-ELASASTDSTLRLWDVKEN---LPVRTFR---------GHMNEKNFVGLTVN  105 (179)
Q Consensus        55 ~i~~~~~~~~-~-~l~~~~~d~~v~iwd~~~~---~~~~~~~---------~~~~~v~~~~~~~~  105 (179)
                      .-+.|+|.|+ . .++.+...|.|++++....   +.+..+.         ........|+++|+
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            3467888888 3 4666677888888874322   1222221         01345778999996

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=91.72  E-value=2.1  Score=28.89  Aligned_cols=100  Identities=7%  Similarity=-0.029  Sum_probs=49.8

Q ss_pred             CeEEEecCC-----CcEEEEecCCCcceee--ecCCCCCeEEEEEeeCCCEEEEeccC-----CcEEEEEcCCCcccccc
Q 038439           65 DELASASTD-----STLRLWDVKENLPVRT--FRGHMNEKNFVGLTVNSEYIACGSES-----NEVYVYHKEISKPVTWH  132 (179)
Q Consensus        65 ~~l~~~~~d-----~~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~d-----~~v~vwd~~~~~~~~~~  132 (179)
                      ..++.|+.+     ..+.+||+.+.+-...  +.........+.  -++..++.|+.+     ..+.+||+.+.+-....
T Consensus       123 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~  200 (308)
T 1zgk_A          123 HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV--LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMIT  200 (308)
T ss_dssp             EEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEECC
T ss_pred             EEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE--ECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCC
Confidence            445555432     3577888876542221  111111112222  267777777654     45889998876433221


Q ss_pred             ccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCC-----CcEEEEeec
Q 038439          133 RFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQ-----GTIKVLVLA  178 (179)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~  178 (179)
                      ....+          ......+.+  +++.++.|+.+     ..+.+||+.
T Consensus       201 ~~p~~----------r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~  239 (308)
T 1zgk_A          201 AMNTI----------RSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVE  239 (308)
T ss_dssp             CCSSC----------CBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETT
T ss_pred             CCCCc----------cccceEEEE--CCEEEEEeCCCCCCccceEEEEeCC
Confidence            11110          111122222  56677777654     458888865

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=91.68  E-value=1.8  Score=30.19  Aligned_cols=66  Identities=11%  Similarity=-0.008  Sum_probs=37.1

Q ss_pred             CCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccC---CCeEEEE
Q 038439           95 NEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD---SPTMLTA  166 (179)
Q Consensus        95 ~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~  166 (179)
                      .....|+|.|+|+.++++...|.|++++.. ++....+.- ...   .. .........++++|+   +..|+..
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~-~~~---v~-~~g~~g~~gia~~pdf~~~g~lYv~   86 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSG-VPD---VW-AHGQGGLLDVVLAPDFAQSRRIWLS   86 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBS-CCC---CC-CSTTCSEEEEEECTTHHHHCEEEEE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecC-Ccc---cc-cCCCCCceeEEECCCCCCCCEEEEE
Confidence            346789999999834445567899998853 322111110 000   00 011345788999996   5555544

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=91.03  E-value=2.5  Score=28.56  Aligned_cols=93  Identities=12%  Similarity=0.039  Sum_probs=45.5

Q ss_pred             CcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc-C-----CcEEEEEcCCCccccccccCCCCCCCCcccCC
Q 038439           74 STLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE-S-----NEVYVYHKEISKPVTWHRFSSPDMDDTDEDAG  147 (179)
Q Consensus        74 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d-----~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  147 (179)
                      ..+.+||+.+.+-...-..........+...+++.++.|+. +     ..+.+||+.+.+-........+          
T Consensus       117 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~----------  186 (315)
T 4asc_A          117 DSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTA----------  186 (315)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSC----------
T ss_pred             ceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCc----------
Confidence            35788888775422111111111111222346777777776 2     4688999887643222111110          


Q ss_pred             cceEEEEEEccCCCeEEEEeCCC-----cEEEEeec
Q 038439          148 SYFISAVCWKSDSPTMLTANSQG-----TIKVLVLA  178 (179)
Q Consensus       148 ~~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~  178 (179)
                      ......+.+  +++.++.|+.++     .+.+||+.
T Consensus       187 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~  220 (315)
T 4asc_A          187 RSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSIT  220 (315)
T ss_dssp             CBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETT
T ss_pred             hhceEEEEE--CCEEEEEeccCCCCccceEEEEECC
Confidence            111111222  567777776654     47777764

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=89.46  E-value=0.65  Score=37.08  Aligned_cols=37  Identities=30%  Similarity=0.361  Sum_probs=30.6

Q ss_pred             ceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeec
Q 038439           55 AVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFR   91 (179)
Q Consensus        55 ~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~   91 (179)
                      .+.++...++ .++++-+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            4566777777 899999999999999999998877643

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=88.08  E-value=2.8  Score=31.67  Aligned_cols=59  Identities=7%  Similarity=0.086  Sum_probs=39.1

Q ss_pred             eEEEEEeeCCCEEEEeccC------------CcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEE
Q 038439           97 KNFVGLTVNSEYIACGSES------------NEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTML  164 (179)
Q Consensus        97 v~~~~~~~~~~~~~~~~~d------------~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  164 (179)
                      .-.|.|+|+|++++.-..+            ..+.+.+..+++....+.. ..          ...++.++|+||++.|+
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~-P~----------gaE~TG~~fspDg~tlf  546 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PI----------GCEVTGISFSPDQKTLF  546 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC-CT----------TCEEEEEEECTTSSEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC-CC----------CccCcCeeECCCCCEEE
Confidence            4568999999976654322            2355566666655433321 11          67899999999999887


Q ss_pred             EE
Q 038439          165 TA  166 (179)
Q Consensus       165 ~~  166 (179)
                      +.
T Consensus       547 vn  548 (592)
T 3zwu_A          547 VG  548 (592)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=87.44  E-value=5  Score=27.12  Aligned_cols=54  Identities=11%  Similarity=0.086  Sum_probs=28.0

Q ss_pred             cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc------CCcEEEEEcCCCcc
Q 038439           75 TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE------SNEVYVYHKEISKP  128 (179)
Q Consensus        75 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------d~~v~vwd~~~~~~  128 (179)
                      .+.+||+.+.+-...-..........+...++..++.|+.      -..+.+||+.+.+-
T Consensus       128 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W  187 (318)
T 2woz_A          128 SVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW  187 (318)
T ss_dssp             EEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred             eEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence            4777888765432211111111111122246777777764      24589999987653

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=87.24  E-value=7.7  Score=29.86  Aligned_cols=107  Identities=7%  Similarity=0.002  Sum_probs=52.5

Q ss_pred             CeEEEecCC------CcEEEEecCCCccee--eecCCCCCeEEEEEeeCCCEEEEeccCC--cEEEEEcCCCcccccccc
Q 038439           65 DELASASTD------STLRLWDVKENLPVR--TFRGHMNEKNFVGLTVNSEYIACGSESN--EVYVYHKEISKPVTWHRF  134 (179)
Q Consensus        65 ~~l~~~~~d------~~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~d~--~v~vwd~~~~~~~~~~~~  134 (179)
                      ..++.|+.+      ..+.+||..+.+-..  .+...... .++..-.++..++.|+.++  .+.+||+.+..-......
T Consensus       453 ~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~  531 (695)
T 2zwa_A          453 QLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPK  531 (695)
T ss_dssp             EEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCS
T ss_pred             EEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCC
Confidence            455555532      246778877643221  11111111 1222323788888887654  689999987653221110


Q ss_pred             CCCCCCCCcccCCcceEEEEEEccC-CCeEEEEeC--C-----CcEEEEeecC
Q 038439          135 SSPDMDDTDEDAGSYFISAVCWKSD-SPTMLTANS--Q-----GTIKVLVLAA  179 (179)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~--d-----g~i~iwd~~~  179 (179)
                      ...  ...     ......+.+..+ ++.++.|+.  +     +.+.+||+.+
T Consensus       532 g~~--p~~-----r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~  577 (695)
T 2zwa_A          532 DEF--FQN-----SLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA  577 (695)
T ss_dssp             SGG--GGS-----CCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT
T ss_pred             CCC--CCc-----ccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC
Confidence            000  000     111122444544 566667765  2     3588888753

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=86.86  E-value=5.5  Score=26.93  Aligned_cols=53  Identities=9%  Similarity=0.041  Sum_probs=28.4

Q ss_pred             CcEEEEecCCCcceee--ecCCCCCeEEEEEeeCCCEEEEeccC-----CcEEEEEcCCCcc
Q 038439           74 STLRLWDVKENLPVRT--FRGHMNEKNFVGLTVNSEYIACGSES-----NEVYVYHKEISKP  128 (179)
Q Consensus        74 ~~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~d-----~~v~vwd~~~~~~  128 (179)
                      ..+.+||+.+.+-...  +....... ++. .-+++.++.|+.+     ..+.+||+.+.+-
T Consensus       175 ~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  234 (318)
T 2woz_A          175 NRVFIYNPKKGDWKDLAPMKTPRSMF-GVA-IHKGKIVIAGGVTEDGLSASVEAFDLKTNKW  234 (318)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSC-EEE-EETTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred             ceEEEEcCCCCEEEECCCCCCCcccc-eEE-EECCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence            3588899887542221  11111111 222 2367777777653     3477889887653

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=85.51  E-value=6.4  Score=29.69  Aligned_cols=62  Identities=10%  Similarity=0.123  Sum_probs=40.5

Q ss_pred             CCeEEEEEeeCCCEEEEecc------------CCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCe
Q 038439           95 NEKNFVGLTVNSEYIACGSE------------SNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPT  162 (179)
Q Consensus        95 ~~v~~~~~~~~~~~~~~~~~------------d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  162 (179)
                      .....|.|.++|.+.+....            ...|..++..+++.......  +.         ...++.++|+||++.
T Consensus       476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~--P~---------~aEpnGiafSPD~kt  544 (592)
T 4a9v_A          476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG--PI---------GCEVTGISFSPDQKT  544 (592)
T ss_dssp             CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEEC--CT---------TCEEEEEEECTTSSE
T ss_pred             CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeC--CC---------CccccCCEECCCCCE
Confidence            34567999999988773321            12566667666665433321  10         457899999999998


Q ss_pred             EEEEe
Q 038439          163 MLTAN  167 (179)
Q Consensus       163 l~~~~  167 (179)
                      |++.-
T Consensus       545 LfV~v  549 (592)
T 4a9v_A          545 LFVGI  549 (592)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87754

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=84.68  E-value=0.94  Score=36.94  Aligned_cols=36  Identities=31%  Similarity=0.365  Sum_probs=28.8

Q ss_pred             eeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeec
Q 038439           56 VSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFR   91 (179)
Q Consensus        56 i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~   91 (179)
                      +.++...++ .++++-+.|+++|+|++.+++++.+..
T Consensus       240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            344555566 889999999999999999998877643

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=82.75  E-value=1.1  Score=36.59  Aligned_cols=38  Identities=8%  Similarity=-0.128  Sum_probs=30.6

Q ss_pred             eEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccccc
Q 038439           97 KNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF  134 (179)
Q Consensus        97 v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~  134 (179)
                      +.+++..++..++++-+.|+.+++|++.+++++.+..+
T Consensus       240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL  277 (1139)
T 4fhn_B          240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL  277 (1139)
T ss_dssp             BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred             eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence            34456667788999999999999999999987766543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=82.48  E-value=15  Score=28.31  Aligned_cols=63  Identities=11%  Similarity=0.155  Sum_probs=37.2

Q ss_pred             CeEEEecCCC--cEEEEecCCCcceee-----ecCCCCCeEEEEEeeC-CCEEEEecc--C-----CcEEEEEcCCCc
Q 038439           65 DELASASTDS--TLRLWDVKENLPVRT-----FRGHMNEKNFVGLTVN-SEYIACGSE--S-----NEVYVYHKEISK  127 (179)
Q Consensus        65 ~~l~~~~~d~--~v~iwd~~~~~~~~~-----~~~~~~~v~~~~~~~~-~~~~~~~~~--d-----~~v~vwd~~~~~  127 (179)
                      ..++.|+.++  .+.+||..+.+-...     ..........+.+..+ +..++.|+.  +     ..+.+||+.+..
T Consensus       502 ~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          502 NVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             CEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             EEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            6666766544  688899887542211     1111222233555555 667777765  2     458899998876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	179
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.003
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.002
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.003
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.001
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	9e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.004
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.004
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.003
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.4 bits (129), Expect = 7e-10
 Identities = 23/133 (17%), Positives = 53/133 (39%), Gaps = 12/133 (9%)

Query: 42  YQSTAPCVHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVG 101
            +S+   +     + +         L S S D T+++WDV   + + T  GH N    V 
Sbjct: 195 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL 254

Query: 102 LTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSP 161
                ++I   ++   + V+  +  + +                A  +F++++ +   +P
Sbjct: 255 FHSGGKFILSCADDKTLRVWDYKNKRCMKTLN------------AHEHFVTSLDFHKTAP 302

Query: 162 TMLTANSQGTIKV 174
            ++T +   T+KV
Sbjct: 303 YVVTGSVDQTVKV 315

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.0 bits (128), Expect = 1e-09
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 51  GHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI 109
           GH   V  V F S  + + S + D TLR+WD K    ++T   H +    +     + Y+
Sbjct: 245 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 304

Query: 110 ACGSESNEVYVY 121
             GS    V V+
Sbjct: 305 VTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (103), Expect = 2e-06
 Identities = 19/107 (17%), Positives = 42/107 (39%), Gaps = 1/107 (0%)

Query: 51  GHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI 109
           GH+  V+ V F      + SAS D+T+++WD +     RT +GH +    +    + + +
Sbjct: 15  GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 74

Query: 110 ACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCW 156
           A  S    + ++  +  + +        ++           I +   
Sbjct: 75  ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR 121

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.6 bits (88), Expect = 2e-04
 Identities = 23/138 (16%), Positives = 45/138 (32%), Gaps = 11/138 (7%)

Query: 47  PCVHGHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVN 105
               GH++ V  V+   +   +AS S D T+R+W V         R H +    +     
Sbjct: 137 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 196

Query: 106 SEYIACGSESNEVYVYHKEISKP---------VTWHRFSSPDMDDTDEDAGSYFISAVCW 156
           S Y +    +        +             +     S+     T     ++ +  V +
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW-VRGVLF 255

Query: 157 KSDSPTMLTANSQGTIKV 174
            S    +L+     T++V
Sbjct: 256 HSGGKFILSCADDKTLRV 273

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.0 bits (123), Expect = 5e-09
 Identities = 19/133 (14%), Positives = 45/133 (33%), Gaps = 16/133 (12%)

Query: 6   VKVWCTRQEASVLNI-DMKANICCVKYNPGSSNYIA--------------KYQSTAPCVH 50
            K+W  R+          +++I  + + P  + +                  +       
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267

Query: 51  GHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI 109
                ++ V F  +   L +   D    +WD  +        GH N  + +G+T +   +
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAV 327

Query: 110 ACGSESNEVYVYH 122
           A GS  + + +++
Sbjct: 328 ATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.7 bits (117), Expect = 3e-08
 Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 10/107 (9%)

Query: 68  ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK 127
            S + D++ +LWDV+E +  +TF GH ++ N +    N    A GS+     ++     +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259

Query: 128 PVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV 174
            +  +   +              I++V +      +L         V
Sbjct: 260 ELMTYSHDNIICG----------ITSVSFSKSGRLLLAGYDDFNCNV 296

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.7 bits (104), Expect = 2e-06
 Identities = 18/127 (14%), Positives = 44/127 (34%), Gaps = 15/127 (11%)

Query: 51  GHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTV--NSE 107
           GH+  ++ + F  N +  A+ S D+T RL+D++ +  + T+           ++   +  
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283

Query: 108 YIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN 167
            +  G +     V+    +                        +S +    D   + T +
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLA------------GHDNRVSCLGVTDDGMAVATGS 331

Query: 168 SQGTIKV 174
               +K+
Sbjct: 332 WDSFLKI 338

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 2e-07
 Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 2/114 (1%)

Query: 9   WCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDE-L 67
                +   L          V     +   +   +     +H H+  V  +KF    +  
Sbjct: 221 HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWF 280

Query: 68  ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVY 121
            S   D+ L  W       +       +      ++V+ +YI  GS   +  VY
Sbjct: 281 VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 1e-04
 Identities = 11/111 (9%), Positives = 26/111 (23%), Gaps = 5/111 (4%)

Query: 51  GHKKAVSYVKFLSNDELASASTDSTLRLWDVKEN-----LPVRTFRGHMNEKNFVGLTVN 105
            H + V  V   +            +++WD+        +         N      L  +
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108

Query: 106 SEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCW 156
              +  G E++ + ++      P      +S                    
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (78), Expect = 0.003
 Identities = 13/166 (7%), Positives = 37/166 (22%), Gaps = 13/166 (7%)

Query: 9   WCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDELA 68
                 AS ++I              +       +      H     +  + +    E  
Sbjct: 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWL 239

Query: 69  SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKP 128
           +   +S+                 H +    +      ++     + N +  +       
Sbjct: 240 AVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS 299

Query: 129 VTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV 174
           +   + SS              + +     D   ++T +      V
Sbjct: 300 IFQSKESSS-------------VLSCDISVDDKYIVTGSGDKKATV 332

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.7 bits (109), Expect = 3e-07
 Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 19/157 (12%)

Query: 31  YNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVR- 88
           ++  +   + +  S      GHK +V  V F  + + + S S D +++LW+++       
Sbjct: 232 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD 291

Query: 89  -----------TFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSP 137
                      T+ GH +    V  T N EYI  GS+   V  + K+   P+   +    
Sbjct: 292 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ---- 347

Query: 138 DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV 174
                +        +      +     T +     ++
Sbjct: 348 --GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.3 bits (108), Expect = 5e-07
 Identities = 16/118 (13%), Positives = 42/118 (35%), Gaps = 7/118 (5%)

Query: 64  NDELASASTDSTLRLWDVKEN-------LPVRTFRGHMNEKNFVGLTVNSEYIACGSESN 116
              +A+ S D  +R+WD +             +  GH +    V  T + + +  GS   
Sbjct: 217 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 276

Query: 117 EVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV 174
            V +++ + +   +  +  +    +        F+ +V    +   +L+ +    +  
Sbjct: 277 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 334

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.6 bits (101), Expect = 4e-06
 Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 48  CVHGHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNE------KNFV 100
              GHK  V  V    NDE + S S D  +  WD K   P+   +GH N        N  
Sbjct: 303 TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGS 362

Query: 101 GLTVNSEYIACGSESNEVYVY 121
            L       A GS   +  ++
Sbjct: 363 SLGPEYNVFATGSGDCKARIW 383

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 4e-07
 Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 17/149 (11%)

Query: 42  YQSTAPCVHGHKKAVSYVKFLSNDELASASTDSTLRLWDVK----ENLPVRTFRGHMNEK 97
           + +TA     H   +  V    N    S S D  L++WD K    EN   +++   +++ 
Sbjct: 3   FIATANAGKAHDADIFSVSA-CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61

Query: 98  NFVGLTV---------NSEYIACGSESNEVYVYH---KEISKPVTWHRFSSPDMDDTDED 145
               + V             +A  S S ++  Y    ++ +K V + +    D D     
Sbjct: 62  GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHS 121

Query: 146 AGSYFISAVCWKSDSPTMLTANSQGTIKV 174
             +    A   +  S  ++  + +GT  +
Sbjct: 122 FWALKWGASNDRLLSHRLVATDVKGTTYI 150

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.3 bits (105), Expect = 1e-06
 Identities = 15/109 (13%), Positives = 32/109 (29%), Gaps = 1/109 (0%)

Query: 51  GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIA 110
           GH  +V       ++ + + + D  +R++D      +    GH      +    +   + 
Sbjct: 10  GHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA-HGGILV 68

Query: 111 CGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD 159
            GS    V V+  +           +  +   D          V    D
Sbjct: 69  SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 117

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 3e-06
 Identities = 13/46 (28%), Positives = 19/46 (41%)

Query: 50 HGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMN 95
           GH   V        + + S S D+TL++W       +RT  GH  
Sbjct: 13 KGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 58

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 3e-04
 Identities = 22/126 (17%), Positives = 53/126 (42%), Gaps = 14/126 (11%)

Query: 49  VHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEY 108
           + GH   V  ++F     + S S D+++R+WDV+    + T  GH +     G+ +    
Sbjct: 173 LQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMELKDNI 229

Query: 109 IACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS 168
           +  G+  + V ++  +  + +   +  +                  C + +   ++T++ 
Sbjct: 230 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT-----------CLQFNKNFVITSSD 278

Query: 169 QGTIKV 174
            GT+K+
Sbjct: 279 DGTVKL 284

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 20/129 (15%), Positives = 52/129 (40%), Gaps = 9/129 (6%)

Query: 50  HGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGL-TVNSEY 108
            GH+   S ++   ++ L S + DST+++WD+K    ++T +G    ++ V     N  +
Sbjct: 214 TGHQSLTSGMEL-KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF 272

Query: 109 IACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS 168
           +   S+   V ++  +  + +        ++   +       +  +   +        + 
Sbjct: 273 VITSSDDGTVKLWDLKTGEFIR-------NLVTLESGGSGGVVWRIRASNTKLVCAVGSR 325

Query: 169 QGTIKVLVL 177
            GT +  +L
Sbjct: 326 NGTEETKLL 334

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 0.003
 Identities = 18/166 (10%), Positives = 45/166 (27%), Gaps = 16/166 (9%)

Query: 9   WCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDELA 68
                 ++V  + +            +             V     A           + 
Sbjct: 92  TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV 151

Query: 69  SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKP 128
           S + D  +++WD +    + T +GH N    +    +  ++  GS    + V+  E    
Sbjct: 152 SGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGNC 209

Query: 129 VTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV 174
           +                           +     +++ N+  T+K+
Sbjct: 210 IHTLTGHQS--------------LTSGMELKDNILVSGNADSTVKI 241

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.8 bits (101), Expect = 3e-06
 Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 1/111 (0%)

Query: 50  HGHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEY 108
           +GH KA++ +   ++ + L SA  +  +  WD+   +  R F            T +   
Sbjct: 9   YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 68

Query: 109 IACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD 159
           +   S  + + V     S   +    ++         A S           
Sbjct: 69  LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY 119

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.4 bits (100), Expect = 5e-06
 Identities = 18/118 (15%), Positives = 40/118 (33%), Gaps = 2/118 (1%)

Query: 9   WCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDE-L 67
                    L      +   V YN         ++  +     H  +V  + +  +   +
Sbjct: 194 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI 253

Query: 68  ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFV-GLTVNSEYIACGSESNEVYVYHKE 124
           ASAS D T+++W+V      +T       ++   G+    + +   S +  +   + E
Sbjct: 254 ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.4 bits (82), Expect = 0.001
 Identities = 10/116 (8%), Positives = 30/116 (25%), Gaps = 3/116 (2%)

Query: 43  QSTAPCVHGHKKAVSYVKFLSND--ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFV 100
            +  P +    +  + V   +    ++   +  +++    V        +  H ++    
Sbjct: 6   TALFPSLPRTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVA 64

Query: 101 GLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCW 156
             + +  Y A G     V ++    +  +             D    S        
Sbjct: 65  KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAV 120

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.6 bits (98), Expect = 9e-06
 Identities = 14/103 (13%), Positives = 34/103 (33%), Gaps = 3/103 (2%)

Query: 22  MKANICCVKYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDELASASTDSTLRLWDV 81
           +       K +          +         +  +  + +L + + A+   D+T+R+WDV
Sbjct: 221 VITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV 280

Query: 82  KENLPVRTFRGHMNEKNFVGLTV---NSEYIACGSESNEVYVY 121
             +  V+ +     +     + V    +  I   S    +  Y
Sbjct: 281 TTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 1e-05
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 47 PCVHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNE 96
           C     K V  +++  + ++ S   D+T+++WD       R   GH   
Sbjct: 9  HCRSETSKGVYCLQY-DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGS 57

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (78), Expect = 0.004
 Identities = 20/129 (15%), Positives = 56/129 (43%), Gaps = 8/129 (6%)

Query: 46  APCVHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVN 105
              ++GHK+ ++ +++  +  + S S+D+T+RLWD++    +R   GH      +    +
Sbjct: 171 VRTLNGHKRGIACLQY-RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI--RFD 227

Query: 106 SEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLT 165
           ++ I  G+   ++ V+    +        +       +       +  + +  D   +++
Sbjct: 228 NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR---VFRLQF--DEFQIVS 282

Query: 166 ANSQGTIKV 174
           ++   TI +
Sbjct: 283 SSHDDTILI 291

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 4e-05
 Identities = 12/90 (13%), Positives = 25/90 (27%), Gaps = 5/90 (5%)

Query: 50  HGHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVG----LTV 104
              K  +S +K + +   L   S D +L ++              +  K+ +     +  
Sbjct: 8   QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67

Query: 105 NSEYIACGSESNEVYVYHKEISKPVTWHRF 134
               I  G+   E+       S        
Sbjct: 68  TDLQIYVGTVQGEILKVDLIGSPSFQALTN 97

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.8 bits (78), Expect = 0.004
 Identities = 14/111 (12%), Positives = 40/111 (36%), Gaps = 3/111 (2%)

Query: 34  GSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRG 92
            S  +  +              V+ ++F    + L +A +D  +  W+++    ++ F  
Sbjct: 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291

Query: 93  HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTD 143
             NE + V +  +   +   +  +     +  I + +  +  S   + D +
Sbjct: 292 F-NEDSVVKIACSDNILCLATSDDTFKT-NAAIDQTIELNASSIYIIFDYE 340

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.2 bits (92), Expect = 5e-05
 Identities = 10/86 (11%), Positives = 26/86 (30%), Gaps = 3/86 (3%)

Query: 52  HKKAVSYVKFLSNDE-LASASTDSTLRLWDVKEN--LPVRTFRGHMNEKNFVGLTVNSEY 108
             + +S   +  +   +A    +  + +++   N  + V   + H  +   V    +S  
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 109 IACGSESNEVYVYHKEISKPVTWHRF 134
           I         YV+  +          
Sbjct: 66  IVTCGTDRNAYVWTLKGRTWKPTLVI 91

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.8 bits (88), Expect = 2e-04
 Identities = 8/32 (25%), Positives = 18/32 (56%)

Query: 50  HGHKKAVSYVKFLSNDELASASTDSTLRLWDV 81
           + HK  V+ + + +   L S+  D+ ++ W+V
Sbjct: 255 NAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.9 bits (78), Expect = 0.003
 Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 8/90 (8%)

Query: 50  HGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI 109
            GH K ++ +     + L S S D  +  W           + H N    +  +   EY 
Sbjct: 10  SGHNKGITALTV---NPLISGSYDGRIMEWSSS-----SMHQDHSNLIVSLDNSKAQEYS 61

Query: 110 ACGSESNEVYVYHKEISKPVTWHRFSSPDM 139
           +   +         +          S+ + 
Sbjct: 62  SISWDDTLKVNGITKHEFGSQPKVASANND 91

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.7 bits (83), Expect = 8e-04
 Identities = 7/76 (9%), Positives = 22/76 (28%), Gaps = 3/76 (3%)

Query: 67  LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVN---SEYIACGSESNEVYVYHK 123
           + + +    L + D ++    +           +   V        A  ++S  +     
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 124 EISKPVTWHRFSSPDM 139
              + +     S+P+ 
Sbjct: 64  VTGETLGRIDLSTPEE 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	179
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.96
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.95
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.95
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.93
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.92
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.92
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.92
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.91
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.88
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.83
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.82
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.82
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.77
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.77
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.69
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.67
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.63
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.62
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.61
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.61
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.55
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.54
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.44
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.43
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.38
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.36
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.21
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.21
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.21
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.16
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.14
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.13
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.99
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.96
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.92
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.85
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.82
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.78
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.78
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.69
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.65
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.6
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.56
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.33
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.29
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.22
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.1
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.01
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.95
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.92
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.88
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.54
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.28
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.2
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.88
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.81
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.8
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.77
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.7
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.47
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.33
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.0
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.8
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.75
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	95.25
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.22
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	94.02
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	93.97
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	93.79
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	93.08
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.02
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	92.81
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	90.43
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.41
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	88.48
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	83.96

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.8e-33  Score=190.67  Aligned_cols=174  Identities=18%  Similarity=0.238  Sum_probs=145.5

Q ss_pred             CCCccEEEEEcCCceeE--Eeec-CCCceeEEEEcCCCCeEEEEe------------CCCcee--eecccCceeEEEEee
Q 038439            1 MAYGKVKVWCTRQEASV--LNID-MKANICCVKYNPGSSNYIAKY------------QSTAPC--VHGHKKAVSYVKFLS   63 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~--~~~~-~~~~v~~~~~~~~~~~~~~~~------------~~~~~~--~~~~~~~i~~~~~~~   63 (179)
                      +.||+|+|||+.+++..  ..+. |..+|.+++|+|+++.+++++            ..++++  +.+|...|.+++|+|
T Consensus        77 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~  156 (311)
T d1nr0a1          77 DVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP  156 (311)
T ss_dssp             ETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECS
T ss_pred             ccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            46999999999887643  3343 788999999999997777775            223333  778999999999999


Q ss_pred             C-C-eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCC
Q 038439           64 N-D-ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDD  141 (179)
Q Consensus        64 ~-~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~  141 (179)
                      + . .+++|+.|+.|++||+++++....+..|...|.++.|+|+++++++++.|+.|++||++++.....+.....    
T Consensus       157 ~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~----  232 (311)
T d1nr0a1         157 SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL----  232 (311)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTS----
T ss_pred             cceeeecccccccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccccccccc----
Confidence            9 5 588899999999999999999999999999999999999999999999999999999999877665543211    


Q ss_pred             CcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          142 TDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       142 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      .... |...|++++|+|++++|++|+.||.|+|||+++
T Consensus       233 ~~~~-h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t  269 (311)
T d1nr0a1         233 KNVA-HSGSVFGLTWSPDGTKIASASADKTIKIWNVAT  269 (311)
T ss_dssp             SSCS-SSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             cccc-ccccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence            1112 377899999999999999999999999999764

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.4e-32  Score=187.15  Aligned_cols=164  Identities=16%  Similarity=0.219  Sum_probs=141.9

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-------------------------------------
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-------------------------------------   42 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-------------------------------------   42 (179)
                      |.||+|+|||+.+++.+..+. |..+|.+++|+|++..+++++                                     
T Consensus        74 s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (340)
T d1tbga_          74 SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD  153 (340)
T ss_dssp             ETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEE
T ss_pred             ECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccccccc
Confidence            479999999999999998886 788999999999996665554                                     


Q ss_pred             ------------------------------------------------------------CCCcee--eecccCceeEEE
Q 038439           43 ------------------------------------------------------------QSTAPC--VHGHKKAVSYVK   60 (179)
Q Consensus        43 ------------------------------------------------------------~~~~~~--~~~~~~~i~~~~   60 (179)
                                                                                  +.++++  +.+|...|++++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~  233 (340)
T d1tbga_         154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC  233 (340)
T ss_dssp             TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             ccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEE
Confidence                                                                        223333  677899999999


Q ss_pred             EeeC-CeEEEecCCCcEEEEecCCCcceeeec--CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCC
Q 038439           61 FLSN-DELASASTDSTLRLWDVKENLPVRTFR--GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSP  137 (179)
Q Consensus        61 ~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~  137 (179)
                      |+|+ .+|++++.|+.|++||++..+.+..+.  .+...+.+++|+|++++|++|+.||.|++||+.+++++..+..   
T Consensus       234 ~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---  310 (340)
T d1tbga_         234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG---  310 (340)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECC---
T ss_pred             ECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcC---
Confidence            9999 999999999999999999887776553  4566799999999999999999999999999999888766531   


Q ss_pred             CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439          138 DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       138 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  176 (179)
                              | ...|++++|+|++++|++|+.||.|+|||
T Consensus       311 --------H-~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         311 --------H-DNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             --------C-SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             --------C-CCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence                    2 67899999999999999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6e-30  Score=176.24  Aligned_cols=163  Identities=10%  Similarity=0.126  Sum_probs=141.5

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee-eecccCceeEEEEeeC-CeE
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC-VHGHKKAVSYVKFLSN-DEL   67 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~i~~~~~~~~-~~l   67 (179)
                      +.|+.|++|++.++++..... |...|.+++|++++..+++++          +.++.+ ...|...|.+++|+|+ ..+
T Consensus       160 ~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l  239 (337)
T d1gxra_         160 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWL  239 (337)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccceeecccccccceEEEEEccccccc
Confidence            368899999999998877765 788999999999997666655          344455 5568899999999999 899


Q ss_pred             EEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCC
Q 038439           68 ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAG  147 (179)
Q Consensus        68 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  147 (179)
                      ++++.|+.+++||+++++.. ....|...|.+++|+|++++|++++.|+.|++||+.+++.+.....             
T Consensus       240 ~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-------------  305 (337)
T d1gxra_         240 AVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-------------  305 (337)
T ss_dssp             EEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-------------
T ss_pred             ceeccccccccccccccccc-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccC-------------
Confidence            99999999999999987765 4557889999999999999999999999999999999988765442             


Q ss_pred             cceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          148 SYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       148 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      ...|.+++|+|++++|++|+.||+|+|||+
T Consensus       306 ~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         306 SSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            668999999999999999999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.2e-29  Score=171.61  Aligned_cols=164  Identities=17%  Similarity=0.248  Sum_probs=142.3

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC---
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN---   64 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~---   64 (179)
                      +.|+.+++||+++++.+..+. +...+.+++|+|++..+++++          ...+.+  +.+|...+.++.|+|+   
T Consensus       120 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  199 (317)
T d1vyhc1         120 SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSY  199 (317)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGG
T ss_pred             ccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeecccc
Confidence            368999999999999888876 788899999999996555554          333333  6788888999988875   


Q ss_pred             ------------------CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCC
Q 038439           65 ------------------DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEIS  126 (179)
Q Consensus        65 ------------------~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~  126 (179)
                                        ..+++++.|+.|++||+++++++..+..|...|.+++|+|++++|++|+.||.|++||++++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  279 (317)
T d1vyhc1         200 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK  279 (317)
T ss_dssp             GGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred             ceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCC
Confidence                              24889999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439          127 KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  176 (179)
                      +++..+..            |...|++++|+|++++|++|+.||+|+|||
T Consensus       280 ~~~~~~~~------------h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         280 RCMKTLNA------------HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CCCEEEEC------------CSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             cEEEEEcC------------CCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            88766542            267899999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=1.6e-29  Score=172.55  Aligned_cols=164  Identities=13%  Similarity=0.108  Sum_probs=138.4

Q ss_pred             CccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee----eecccCceeEEEEeeC-Ce
Q 038439            3 YGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC----VHGHKKAVSYVKFLSN-DE   66 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~----~~~~~~~i~~~~~~~~-~~   66 (179)
                      ++.|.+||+.+.+....+. |...|++++|+|+|+.+++++          ......    +..|..+|.+++|+|+ .+
T Consensus        37 ~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~  116 (311)
T d1nr0a1          37 GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR  116 (311)
T ss_dssp             TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCE
T ss_pred             CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccc
Confidence            5679999999988877774 889999999999995554444          222211    7789999999999999 88


Q ss_pred             EEEecC--CCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCE-EEEeccCCcEEEEEcCCCccccccccCCCCCCCCc
Q 038439           67 LASAST--DSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEY-IACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTD  143 (179)
Q Consensus        67 l~~~~~--d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~  143 (179)
                      +++++.  +..+++|++.+++....+..|...|.+++|+|++++ +++|+.|+.|++||+++++.......         
T Consensus       117 l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~---------  187 (311)
T d1nr0a1         117 IAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE---------  187 (311)
T ss_dssp             EEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC---------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccccc---------
Confidence            888875  456999999999999999999999999999999886 78899999999999998877655432         


Q ss_pred             ccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          144 EDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       144 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                         |...|+++.|+|+++++++++.|+.|++||++
T Consensus       188 ---~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~  219 (311)
T d1nr0a1         188 ---HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV  219 (311)
T ss_dssp             ---CSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ---ccccccccccCccccccccccccccccccccc
Confidence               16789999999999999999999999999975

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=7.7e-29  Score=172.75  Aligned_cols=178  Identities=11%  Similarity=0.127  Sum_probs=135.7

Q ss_pred             CCCccEEEEEcCCce--eEEeec-CCCceeEEEEcCCCCeEEEEeC----------CC--cee--eecccCceeEEEEee
Q 038439            1 MAYGKVKVWCTRQEA--SVLNID-MKANICCVKYNPGSSNYIAKYQ----------ST--APC--VHGHKKAVSYVKFLS   63 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~~~~~----------~~--~~~--~~~~~~~i~~~~~~~   63 (179)
                      +.||.|+|||..+++  ++..+. |.++|.+++|+|++..+++++.          .+  ++.  +.+|...|.+++|+|
T Consensus        26 ~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p  105 (371)
T d1k8kc_          26 PNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP  105 (371)
T ss_dssp             CSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT
T ss_pred             eCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccccccccccc
Confidence            468999999998765  455554 8899999999999976666651          11  122  567889999999999


Q ss_pred             C-CeEEEecCCCcEEEEecCCCcce----eeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCC
Q 038439           64 N-DELASASTDSTLRLWDVKENLPV----RTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPD  138 (179)
Q Consensus        64 ~-~~l~~~~~d~~v~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~  138 (179)
                      + +.|++++.|+.+++|++......    .....|...|.+++|+|++++|++|+.|+.|++||................
T Consensus       106 ~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~  185 (371)
T d1k8kc_         106 NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG  185 (371)
T ss_dssp             TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTB
T ss_pred             ccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCcccccccccccc
Confidence            9 99999999999999998765432    334567889999999999999999999999999998765432211111000


Q ss_pred             ------CCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          139 ------MDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       139 ------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                            ........|...|.+++|+|++++|++++.|+.|++||++
T Consensus       186 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~  231 (371)
T d1k8kc_         186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD  231 (371)
T ss_dssp             SCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred             ccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeee
Confidence                  0001112236789999999999999999999999999975

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=9.1e-29  Score=167.32  Aligned_cols=168  Identities=14%  Similarity=0.146  Sum_probs=132.9

Q ss_pred             CCCccEEEEEcCCceeEEeec--CCCceeEEEEcCCCCeEEEEe-----------------------------------C
Q 038439            1 MAYGKVKVWCTRQEASVLNID--MKANICCVKYNPGSSNYIAKY-----------------------------------Q   43 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~-----------------------------------~   43 (179)
                      |.||+|++||+++++++..+.  |...|++++|+|++ .+++++                                   .
T Consensus        31 s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  109 (299)
T d1nr0a2          31 DAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA  109 (299)
T ss_dssp             ETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT
T ss_pred             cCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccc-eeecccceeeEEEeccCCcccccccccccccccccccccccc
Confidence            479999999999999888874  78899999999998 566665                                   0


Q ss_pred             CCcee-----------------eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCccee-eecCCCCCeEEEEEee
Q 038439           44 STAPC-----------------VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVR-TFRGHMNEKNFVGLTV  104 (179)
Q Consensus        44 ~~~~~-----------------~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~~~v~~~~~~~  104 (179)
                      .++.+                 .......+.+++|+|+ .++++++.|+.|++||+++++... ....|...|.+++|+|
T Consensus       110 ~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~  189 (299)
T d1nr0a2         110 DGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN  189 (299)
T ss_dssp             TSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            00000                 0012234677889999 899999999999999998776443 3345788999999999


Q ss_pred             CCCEEEEeccCCcEEEEEcCCCccccccc-cCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          105 NSEYIACGSESNEVYVYHKEISKPVTWHR-FSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       105 ~~~~~~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      +++++++++.|+.|++||+.++....... +.         . |...|++++|+|++++|++|+.||.|++||+++
T Consensus       190 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~---------~-h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~  255 (299)
T d1nr0a2         190 NGAFLVATDQSRKVIPYSVANNFELAHTNSWT---------F-HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK  255 (299)
T ss_dssp             TSSEEEEEETTSCEEEEEGGGTTEESCCCCCC---------C-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred             cccccccccccccccccccccccccccccccc---------c-cccccccccccccccceEEEcCCCEEEEEECCC
Confidence            99999999999999999998876543322 21         1 267899999999999999999999999999763

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.8e-28  Score=168.77  Aligned_cols=164  Identities=17%  Similarity=0.272  Sum_probs=139.6

Q ss_pred             CCccEEEEEcCCcee---EEe---ecCCCceeEEEEcCCCCeEEEEeC------------CCcee--eecccCceeEEEE
Q 038439            2 AYGKVKVWCTRQEAS---VLN---IDMKANICCVKYNPGSSNYIAKYQ------------STAPC--VHGHKKAVSYVKF   61 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~---~~~---~~~~~~v~~~~~~~~~~~~~~~~~------------~~~~~--~~~~~~~i~~~~~   61 (179)
                      .||+|+|||+.++..   +..   ..|.+.|.+++|+|+++.+++++.            ..+..  +..|...+.++.|
T Consensus        70 ~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  149 (337)
T d1gxra_          70 GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI  149 (337)
T ss_dssp             CBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEE
T ss_pred             ECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccc
Confidence            489999999876532   222   247889999999999976666551            11222  6678889999999


Q ss_pred             eeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCC
Q 038439           62 LSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMD  140 (179)
Q Consensus        62 ~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~  140 (179)
                      +|+ ..+++++.|+.+++||+.+++.......|...+.+++|++++..+++++.|+.+++||+++++.+..+..      
T Consensus       150 ~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~------  223 (337)
T d1gxra_         150 SPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF------  223 (337)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeccccc------
Confidence            999 8999999999999999999998888888999999999999999999999999999999999887766554      


Q ss_pred             CCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          141 DTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       141 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                             ...|.+++|+|++++|++++.|+.+++||++
T Consensus       224 -------~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~  254 (337)
T d1gxra_         224 -------TSQIFSLGYCPTGEWLAVGMESSNVEVLHVN  254 (337)
T ss_dssp             -------SSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             -------ccceEEEEEcccccccceecccccccccccc
Confidence                   6679999999999999999999999999975

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=3.5e-28  Score=164.29  Aligned_cols=178  Identities=21%  Similarity=0.259  Sum_probs=145.4

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-Ce
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DE   66 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~   66 (179)
                      |.||+|+|||+.+++++..+. |...|.+++|+|++..++...          ...+..  +.+|...+.++.++|+ ..
T Consensus        36 s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (317)
T d1vyhc1          36 SEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH  115 (317)
T ss_dssp             ESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSE
T ss_pred             eCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCce
Confidence            479999999999999998886 789999999999996555554          122222  6778899999999999 99


Q ss_pred             EEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCC---------
Q 038439           67 LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSP---------  137 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~---------  137 (179)
                      +++++.|+.+++||+++++.+..+..|...+.+++|+|++.+|++++.|+.|++|++.+++....+.....         
T Consensus       116 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~  195 (317)
T d1vyhc1         116 IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP  195 (317)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECC
T ss_pred             EEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEee
Confidence            99999999999999999999999999999999999999999999999999999999987665433221000         


Q ss_pred             ---------------------------------------C---CCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEE
Q 038439          138 ---------------------------------------D---MDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVL  175 (179)
Q Consensus       138 ---------------------------------------~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw  175 (179)
                                                             .   ....... |...|.+++|+|++++|++++.||.|++|
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iw  274 (317)
T d1vyhc1         196 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG-HDNWVRGVLFHSGGKFILSCADDKTLRVW  274 (317)
T ss_dssp             SCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECSSSSCEEEEETTTEEEEE
T ss_pred             ccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeC-CCCCEEEEEECCCCCEEEEEECCCeEEEE
Confidence                                                   0   0000112 36689999999999999999999999999


Q ss_pred             eecC
Q 038439          176 VLAA  179 (179)
Q Consensus       176 d~~~  179 (179)
                      |+++
T Consensus       275 d~~~  278 (317)
T d1vyhc1         275 DYKN  278 (317)
T ss_dssp             CCTT
T ss_pred             ECCC
Confidence            9863

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.5e-28  Score=168.53  Aligned_cols=170  Identities=13%  Similarity=0.133  Sum_probs=131.3

Q ss_pred             CCCccEEEEEcCCceeEE--------ee-cCCCceeEEEEcCCCCeEEEEe------------CCCcee--eecccCcee
Q 038439            1 MAYGKVKVWCTRQEASVL--------NI-DMKANICCVKYNPGSSNYIAKY------------QSTAPC--VHGHKKAVS   57 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~--------~~-~~~~~v~~~~~~~~~~~~~~~~------------~~~~~~--~~~~~~~i~   57 (179)
                      +.||+|+|||+..++...        .+ .+.++|.+++|+|++..+++++            +.++.+  +.+|...|.
T Consensus        84 s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  163 (325)
T d1pgua1          84 DESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRIN  163 (325)
T ss_dssp             ETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEE
T ss_pred             eCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccc
Confidence            469999999987643221        12 2678899999999998777765            334455  778999999


Q ss_pred             EEEEeeC-C-eEEEecCCCcEEEEecCCCcceeee---cCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCccccc
Q 038439           58 YVKFLSN-D-ELASASTDSTLRLWDVKENLPVRTF---RGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISKPVTW  131 (179)
Q Consensus        58 ~~~~~~~-~-~l~~~~~d~~v~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~~~~  131 (179)
                      +++|+|+ . .+++++.|+.+++||....+....+   ..|...|.+++|+|+ +.++++++.|+.|++||+++++.+..
T Consensus       164 ~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~  243 (325)
T d1pgua1         164 ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY  243 (325)
T ss_dssp             EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE
T ss_pred             cccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccc
Confidence            9999999 4 5788999999999999877655544   345678999999997 68899999999999999999987766


Q ss_pred             cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      +.....       . ....+.++.| |++++|++++.|+.|+|||+++
T Consensus       244 l~~~~~-------~-v~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~  282 (325)
T d1pgua1         244 IEDDQE-------P-VQGGIFALSW-LDSQKFATVGADATIRVWDVTT  282 (325)
T ss_dssp             CCBTTB-------C-CCSCEEEEEE-SSSSEEEEEETTSEEEEEETTT
T ss_pred             cccccc-------c-cccceeeeec-cCCCEEEEEeCCCeEEEEECCC
Confidence            542110       0 0233455555 5789999999999999999863

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=7.3e-28  Score=165.15  Aligned_cols=167  Identities=11%  Similarity=0.061  Sum_probs=132.0

Q ss_pred             CCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-C----------CCcee-----eecccCceeEEEEeeC
Q 038439            2 AYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-Q----------STAPC-----VHGHKKAVSYVKFLSN   64 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-~----------~~~~~-----~~~~~~~i~~~~~~~~   64 (179)
                      .|+.+++|+..+++.+..+. |...|.+++|+|+++.+++++ .          ..+..     ..+|...|.+++|+|+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd  216 (325)
T d1pgua1         137 RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD  216 (325)
T ss_dssp             SSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECST
T ss_pred             ccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccc
Confidence            47789999999999888886 889999999999987766544 1          12221     4467788999999997


Q ss_pred             --CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEe---eCCCEEEEeccCCcEEEEEcCCCccccccccCCCCC
Q 038439           65 --DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLT---VNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDM  139 (179)
Q Consensus        65 --~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~  139 (179)
                        .++++++.|+.|++||+++++.+..+..|...+..+.|+   |++++|++++.|+.|+|||+++++++..+....+..
T Consensus       217 ~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~  296 (325)
T d1pgua1         217 SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQL  296 (325)
T ss_dssp             TCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCG
T ss_pred             cceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcc
Confidence              788999999999999999999999998887777665555   689999999999999999999999887766543210


Q ss_pred             CCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          140 DDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       140 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                              .....++.+.++ .+|++++.||.|++||+
T Consensus       297 --------~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         297 --------GNQQVGVVATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             --------GGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred             --------cCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence                    122334445443 47889999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.9e-27  Score=164.84  Aligned_cols=166  Identities=22%  Similarity=0.345  Sum_probs=131.6

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-----------CCCcee---------eecccCceeEEE
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-----------QSTAPC---------VHGHKKAVSYVK   60 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~---------~~~~~~~i~~~~   60 (179)
                      +.++.+++||..+........+.....++.++|....+++++           ..+..+         ..+|...|.++.
T Consensus       182 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  261 (388)
T d1erja_         182 SGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV  261 (388)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEE
T ss_pred             ccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEE
Confidence            358999999999998888887777777777777544666655           222221         346888999999


Q ss_pred             EeeC-CeEEEecCCCcEEEEecCCCcc------------eeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCc
Q 038439           61 FLSN-DELASASTDSTLRLWDVKENLP------------VRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK  127 (179)
Q Consensus        61 ~~~~-~~l~~~~~d~~v~iwd~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~  127 (179)
                      |+|+ .+|++++.|+.|++||++.++.            ......|...|.+++|+|++++|++|+.||.|++||+++++
T Consensus       262 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~  341 (388)
T d1erja_         262 FTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN  341 (388)
T ss_dssp             ECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC
T ss_pred             ECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence            9999 9999999999999999976432            33445678889999999999999999999999999999998


Q ss_pred             cccccccCCCCCCCCcccCCcceEEEEE------EccCCCeEEEEeCCCcEEEEeec
Q 038439          128 PVTWHRFSSPDMDDTDEDAGSYFISAVC------WKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ++..+..  |          ...|.+++      |+|++++|++|+.||+|+||+++
T Consensus       342 ~~~~l~~--H----------~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         342 PLLMLQG--H----------RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEEEEC--C----------SSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEEEeC--C----------CCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            8766542  2          66788886      46789999999999999999986

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=3.9e-27  Score=164.10  Aligned_cols=164  Identities=13%  Similarity=0.107  Sum_probs=129.8

Q ss_pred             CCCccEEEEEcCCceeEEee---cCCCceeEEEEcCCCCeEEEEeCC----------Cc--ee----eecccCceeEEEE
Q 038439            1 MAYGKVKVWCTRQEASVLNI---DMKANICCVKYNPGSSNYIAKYQS----------TA--PC----VHGHKKAVSYVKF   61 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~----------~~--~~----~~~~~~~i~~~~~   61 (179)
                      |.|++|+|||+.+++....+   .+...|.+++|+|+++.+++++..          ..  ..    ...|...|.+++|
T Consensus        70 s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~  149 (371)
T d1k8kc_          70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW  149 (371)
T ss_dssp             ETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred             ECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccc
Confidence            46999999999877654433   367889999999999666655511          11  11    4568889999999


Q ss_pred             eeC-CeEEEecCCCcEEEEecCCC------------------cceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEE
Q 038439           62 LSN-DELASASTDSTLRLWDVKEN------------------LPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYH  122 (179)
Q Consensus        62 ~~~-~~l~~~~~d~~v~iwd~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd  122 (179)
                      +|+ .+|++++.|+.+++||....                  +.+.....|...+.+++|+|+++++++++.|+.|++||
T Consensus       150 ~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd  229 (371)
T d1k8kc_         150 HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD  229 (371)
T ss_dssp             CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             cccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEe
Confidence            999 89999999999999998643                  23445567788899999999999999999999999999


Q ss_pred             cCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          123 KEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      +++++.+..+...            ..+|.+++|+|++++|++|. |+.+++|..
T Consensus       230 ~~~~~~~~~~~~~------------~~~v~s~~fs~d~~~la~g~-d~~~~~~~~  271 (371)
T d1k8kc_         230 ADKKMAVATLASE------------TLPLLAVTFITESSLVAAGH-DCFPVLFTY  271 (371)
T ss_dssp             GGGTTEEEEEECS------------SCCEEEEEEEETTEEEEEET-TSSCEEEEE
T ss_pred             eecccceeeeecc------------cccceeeeecCCCCEEEEEc-CCceEEEEe
Confidence            9998877665431            66799999999998777655 777777754

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4e-27  Score=165.17  Aligned_cols=127  Identities=13%  Similarity=0.209  Sum_probs=102.9

Q ss_pred             ccCceeEEEEeeCCeEEEecCCCcEEEEecCCCcceeee------cCCCCCeEEEEEeeCCCEEEEeccCCc---EEEEE
Q 038439           52 HKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTF------RGHMNEKNFVGLTVNSEYIACGSESNE---VYVYH  122 (179)
Q Consensus        52 ~~~~i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~d~~---v~vwd  122 (179)
                      +...+.+++|+|+++|++|+.|+.|++||+++++++..+      .+|...|.+++|+|+|++|++|+.|+.   |++||
T Consensus       183 ~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd  262 (393)
T d1sq9a_         183 PSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYE  262 (393)
T ss_dssp             SCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEE
T ss_pred             CCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecc
Confidence            445688999999999999999999999999988776544      457889999999999999999998874   89999


Q ss_pred             cCCCccccccccCCCC--CCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          123 KEISKPVTWHRFSSPD--MDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      +++++.+..+......  ......+| ...|++++|+|++++|++++.|++|++||+++
T Consensus       263 ~~~g~~~~~l~~~~~~~~~~~~~~gH-~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         263 TEFGERIGSLSVPTHSSQASLGEFAH-SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             TTTCCEEEEECBC--------CCBSB-SSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             cccceeeeeeccccccccceeeeecc-cCceeeeccCCCCCeeEEECCCCEEEEEECCC
Confidence            9999887765433221  11122233 88999999999999999999999999999864

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.8e-26  Score=159.81  Aligned_cols=179  Identities=13%  Similarity=0.220  Sum_probs=130.4

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee-eecccCceeEEEEeeC--Ce
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC-VHGHKKAVSYVKFLSN--DE   66 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~i~~~~~~~~--~~   66 (179)
                      +.||+|++||...++.+..+. |...|.+++|++++..++.++          ...... ...+.....++.+.+.  .+
T Consensus       140 ~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (388)
T d1erja_         140 AEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKY  219 (388)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCe
Confidence            468999999999999888776 789999999999996666655          222222 3334445556666665  78


Q ss_pred             EEEecCCCcEEEEecCCCcceeeec-------CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCC
Q 038439           67 LASASTDSTLRLWDVKENLPVRTFR-------GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDM  139 (179)
Q Consensus        67 l~~~~~d~~v~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~  139 (179)
                      |++++.|+.|++||.+++..+..+.       .|...|.+++|+|++++|++++.|+.|++||+++++............
T Consensus       220 l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  299 (388)
T d1erja_         220 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT  299 (388)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------C
T ss_pred             EEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccc
Confidence            9999999999999999887665543       467889999999999999999999999999998876543332211111


Q ss_pred             CCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          140 DDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       140 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      .......|...|.+++|+|++++|++|+.||.|++||+++
T Consensus       300 ~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~  339 (388)
T d1erja_         300 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS  339 (388)
T ss_dssp             EEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred             eeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            1111122367899999999999999999999999999864

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7.6e-26  Score=154.31  Aligned_cols=120  Identities=18%  Similarity=0.279  Sum_probs=86.9

Q ss_pred             eecccCceeEEEEeeCCeEEEecCCCcEEEEecCCCcceeeecCC---CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCC
Q 038439           49 VHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGH---MNEKNFVGLTVNSEYIACGSESNEVYVYHKEI  125 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~  125 (179)
                      +.+|...+.++.+++ +++++++.|+.|++||+...+....+..+   ...+.+  +.++++++++|+.||.|++||+++
T Consensus       213 ~~~~~~~v~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~s~Dg~i~iwd~~t  289 (342)
T d2ovrb2         213 LTGHQSLTSGMELKD-NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC--LQFNKNFVITSSDDGTVKLWDLKT  289 (342)
T ss_dssp             ECCCCSCEEEEEEET-TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEE--EEECSSEEEEEETTSEEEEEETTT
T ss_pred             ecccccceeEEecCC-CEEEEEcCCCEEEEEecccccccccccccceeeeceee--cccCCCeeEEEcCCCEEEEEECCC
Confidence            444555555555443 57777777777777777776666655543   334444  445678999999999999999999


Q ss_pred             CccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCc----EEEEeec
Q 038439          126 SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGT----IKVLVLA  178 (179)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~----i~iwd~~  178 (179)
                      ++.+..+.....       ..|...|++++|+|++.++++|+.||+    |++||+.
T Consensus       290 g~~i~~~~~~~~-------~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         290 GEFIRNLVTLES-------GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             CCEEEEEEECTT-------GGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             CCEEEEEecccC-------CCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            988766543211       122668999999999999999999985    9999985

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=1.4e-25  Score=153.20  Aligned_cols=155  Identities=14%  Similarity=0.165  Sum_probs=124.7

Q ss_pred             eeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEe
Q 038439           15 ASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWD   80 (179)
Q Consensus        15 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd   80 (179)
                      +..+++. |.++|++++|+|+++.+++++          .+++.+  +..|..+|.+++|+|+ .++++++.|+.+++|+
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~  125 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN  125 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccc
Confidence            3455665 899999999999996555555          344444  7788999999999988 8888888888877776


Q ss_pred             cCC-----------------------------------------------------------------------------
Q 038439           81 VKE-----------------------------------------------------------------------------   83 (179)
Q Consensus        81 ~~~-----------------------------------------------------------------------------   83 (179)
                      ...                                                                             
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  205 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD  205 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecC
Confidence            432                                                                             


Q ss_pred             ----------CcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEE
Q 038439           84 ----------NLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISA  153 (179)
Q Consensus        84 ----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  153 (179)
                                ++++..+..|...|.+++|+|++++|++|+.|+.|++||++..+....+....+          ...+.+
T Consensus       206 ~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~----------~~~i~~  275 (340)
T d1tbga_         206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI----------ICGITS  275 (340)
T ss_dssp             TEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTC----------CSCEEE
T ss_pred             ceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccc----------cCceEE
Confidence                      233455667888999999999999999999999999999998877665544322          667999


Q ss_pred             EEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          154 VCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       154 ~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      ++|+|++++|++|+.||.|++||+.+
T Consensus       276 ~~~s~~~~~l~~g~~dg~i~iwd~~~  301 (340)
T d1tbga_         276 VSFSKSGRLLLAGYDDFNCNVWDALK  301 (340)
T ss_dssp             EEECSSSCEEEEEETTSCEEEEETTT
T ss_pred             EEECCCCCEEEEEECCCEEEEEECCC
Confidence            99999999999999999999999753

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=7e-26  Score=152.98  Aligned_cols=163  Identities=15%  Similarity=0.232  Sum_probs=124.0

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe----------CCCcee---eecccCceeEEEEeeC-CeEE
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY----------QSTAPC---VHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~---~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      ++.+++|+...   .........+.+++|+|++..+++.+          ...+..   ...|...|.+++|+|+ .+++
T Consensus       119 ~~~i~~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  195 (299)
T d1nr0a2         119 YKHIAIYSHGK---LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLV  195 (299)
T ss_dssp             SSEEEEEETTE---EEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred             ccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            56788888442   22344566789999999995555444          222222   5568899999999999 9999


Q ss_pred             EecCCCcEEEEecCCCcce---eeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCccc
Q 038439           69 SASTDSTLRLWDVKENLPV---RTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDED  145 (179)
Q Consensus        69 ~~~~d~~v~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  145 (179)
                      +++.|+.|++||+.++...   ..+..|...|.+++|+|++.+|++|+.|+.|++||++++.........         .
T Consensus       196 ~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~---------~  266 (299)
T d1nr0a2         196 ATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG---------A  266 (299)
T ss_dssp             EEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETT---------S
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEec---------C
Confidence            9999999999999876544   345568889999999999999999999999999999987654333222         1


Q ss_pred             CCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          146 AGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       146 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ++...+..+.| +++++|++++.|+.|++||+.
T Consensus       267 ~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         267 HAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             STTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             CCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            22556777765 567899999999999999984

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1e-25  Score=154.38  Aligned_cols=112  Identities=16%  Similarity=0.285  Sum_probs=88.8

Q ss_pred             cccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccc
Q 038439           51 GHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPV  129 (179)
Q Consensus        51 ~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~  129 (179)
                      ++...+.++.++|+ ..+++++.|+.|++||++++..+..+.+|...|.+++++  ++++++++.||.|++||+++....
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~  276 (355)
T d1nexb2         199 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK  276 (355)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccccccccccccccceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeeccccccccccccccee
Confidence            34556677888888 899999999999999999999999999999999999885  578999999999999999887654


Q ss_pred             cccccCCCCCCCCcccCCcceEEE-EEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          130 TWHRFSSPDMDDTDEDAGSYFISA-VCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      ....              ...+.. ..++++++++++| .||.|++||+++
T Consensus       277 ~~~~--------------~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~t  312 (355)
T d1nexb2         277 FSYH--------------HTNLSAITTFYVSDNILVSG-SENQFNIYNLRS  312 (355)
T ss_dssp             EEEE--------------CTTCCCCCEEEECSSEEEEE-ETTEEEEEETTT
T ss_pred             cccc--------------cCCceEEEEEcCCCCEEEEE-eCCEEEEEECCC
Confidence            3322              222333 3466777766665 589999999864

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.6e-25  Score=146.37  Aligned_cols=105  Identities=18%  Similarity=0.206  Sum_probs=63.2

Q ss_pred             CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439           65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE  144 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~  144 (179)
                      ..+++++.|+.|++||+++.+.+..+..+...+..  +++++.+|++|+.||.|++||+.+..........  .......
T Consensus       189 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~  264 (293)
T d1p22a2         189 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGT--LCLRTLV  264 (293)
T ss_dssp             TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTT--TEEEEEC
T ss_pred             CeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCc--eeeEEec
Confidence            45666666666666666666666666555554432  4455666666777777777766543322111000  0000111


Q ss_pred             cCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439          145 DAGSYFISAVCWKSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus       145 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  176 (179)
                      . |...|++++|  ++++|++++.||+|++||
T Consensus       265 ~-H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         265 E-HSGRVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             C-CSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             C-CCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence            2 3677888888  467899999999999998

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.4e-23  Score=139.74  Aligned_cols=161  Identities=9%  Similarity=0.154  Sum_probs=119.6

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCCCcee--------------eecccCceeEEEEeeC-CeE
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPC--------------VHGHKKAVSYVKFLSN-DEL   67 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~i~~~~~~~~-~~l   67 (179)
                      ++.+.+|+..+++.+..+....++.  +++|++..+++++..+..+              ...|...+++++|+|+ .+|
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  177 (287)
T d1pgua2         100 DDDLLILQSFTGDIIKSVRLNSPGS--AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYI  177 (287)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCEE--EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEE
T ss_pred             cccceeeeccceeeeeeccccceee--eeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccc
Confidence            4455666666666666666555554  4556665566555222111              2346788999999999 999


Q ss_pred             EEecCCCcEEEEecCCCccee-eecCCCCCeEEEEEeeC----------CCEEEEeccCCcEEEEEcCCCccccccccCC
Q 038439           68 ASASTDSTLRLWDVKENLPVR-TFRGHMNEKNFVGLTVN----------SEYIACGSESNEVYVYHKEISKPVTWHRFSS  136 (179)
Q Consensus        68 ~~~~~d~~v~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~----------~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~  136 (179)
                      ++++.|+.|++||+.+++... .+..|...|.+++|+|.          +.++++|+.|+.|++||++++...... ...
T Consensus       178 ~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~-~~~  256 (287)
T d1pgua2         178 AAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA-LNA  256 (287)
T ss_dssp             EEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE-TTS
T ss_pred             ccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEE-eCC
Confidence            999999999999999887654 45678899999999874          568999999999999999874433221 211


Q ss_pred             CCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       137 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                                |...|++++|+|++ .|++++.|+.|++|++
T Consensus       257 ----------h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         257 ----------HKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             ----------STTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             ----------CCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence                      27789999999986 5889999999999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.92  E-value=3.7e-24  Score=147.38  Aligned_cols=163  Identities=13%  Similarity=-0.001  Sum_probs=136.1

Q ss_pred             CCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe------------CCCcee-eecccCceeEEEEeeC-CeE
Q 038439            2 AYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY------------QSTAPC-VHGHKKAVSYVKFLSN-DEL   67 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------------~~~~~~-~~~~~~~i~~~~~~~~-~~l   67 (179)
                      .+|.|++||..+++.++ +.|...|.+++|+|+|+.+++++            ..++.. +..|...|.+++|+|+ .+|
T Consensus        22 ~~g~v~v~d~~~~~~~~-~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l  100 (360)
T d1k32a3          22 SRGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFA  100 (360)
T ss_dssp             ETTEEEEECTTSSBEEE-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEE
T ss_pred             ECCeEEEEECCCCcEEE-ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeeccccccc
Confidence            36789999998887655 57899999999999997777666            233333 6778999999999999 999


Q ss_pred             EEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEec----------cCCcEEEEEcCCCccccccccCCC
Q 038439           68 ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGS----------ESNEVYVYHKEISKPVTWHRFSSP  137 (179)
Q Consensus        68 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------~d~~v~vwd~~~~~~~~~~~~~~~  137 (179)
                      ++++.++.+++|++.+++....+..+...+.+++|+|+|++|+.+.          .++.+++||+.+++.......   
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~---  177 (360)
T d1k32a3         101 VVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE---  177 (360)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCS---
T ss_pred             ceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeeccc---
Confidence            9999999999999999998888888888899999999999998543          345689999998766544322   


Q ss_pred             CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          138 DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       138 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                                ...+..++|+|+|++|++++.++.+.+||..
T Consensus       178 ----------~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~  208 (360)
T d1k32a3         178 ----------NSHDYAPAFDADSKNLYYLSYRSLDPSPDRV  208 (360)
T ss_dssp             ----------SSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             ----------ccccccccccCCCCEEEEEeCCCceEccccc
Confidence                      5567889999999999999999999999853

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=8.4e-24  Score=148.13  Aligned_cols=173  Identities=12%  Similarity=0.097  Sum_probs=125.6

Q ss_pred             CCccEEEEEcCCce---------------eEEee----cCCCceeEEEEcCCCCeEEEEe-----------CCCcee---
Q 038439            2 AYGKVKVWCTRQEA---------------SVLNI----DMKANICCVKYNPGSSNYIAKY-----------QSTAPC---   48 (179)
Q Consensus         2 ~d~~i~vwd~~~~~---------------~~~~~----~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~---   48 (179)
                      .||++++|++....               .....    .+...+.+++|+|++  ++++|           .+++++   
T Consensus       144 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~  221 (393)
T d1sq9a_         144 VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNF  221 (393)
T ss_dssp             TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             CCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeeccccccccc
Confidence            58999999975321               11111    144568999999997  44555           223332   


Q ss_pred             -----eecccCceeEEEEeeC-CeEEEecCCCc---EEEEecCCCcceeeec-------------CCCCCeEEEEEeeCC
Q 038439           49 -----VHGHKKAVSYVKFLSN-DELASASTDST---LRLWDVKENLPVRTFR-------------GHMNEKNFVGLTVNS  106 (179)
Q Consensus        49 -----~~~~~~~i~~~~~~~~-~~l~~~~~d~~---v~iwd~~~~~~~~~~~-------------~~~~~v~~~~~~~~~  106 (179)
                           +.+|..+|.+++|+|+ .+|++|+.|++   |++||+++++.+..+.             +|...|.+++|+|++
T Consensus       222 ~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~  301 (393)
T d1sq9a_         222 ESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG  301 (393)
T ss_dssp             ECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS
T ss_pred             ccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCC
Confidence                 4578999999999999 99999998874   8999999987776663             688999999999999


Q ss_pred             CEEEEeccCCcEEEEEcCCCccccccccCCCCC-----CCCc-----ccCCcceEEEEEEccCC----------CeEEEE
Q 038439          107 EYIACGSESNEVYVYHKEISKPVTWHRFSSPDM-----DDTD-----EDAGSYFISAVCWKSDS----------PTMLTA  166 (179)
Q Consensus       107 ~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----~~~~-----~~~~~~~i~~~~~~~~~----------~~l~~~  166 (179)
                      ++|++|+.|+.|++||+++++++..+.-.....     ...+     ... ...+..+.|.+.+          ..+++.
T Consensus       302 ~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (393)
T d1sq9a_         302 ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA-EPGVFDVKFLKKGWRSGMGADLNESLCCV  380 (393)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCS-SCCEEEEEEECTTTSBSTTCTTSCEEEEE
T ss_pred             CeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEE-EcccceEEECccCceeccccCCCCEEEEE
Confidence            999999999999999999998876653211000     0000     011 3457888887643          458999


Q ss_pred             eCCCcEEEEee
Q 038439          167 NSQGTIKVLVL  177 (179)
Q Consensus       167 ~~dg~i~iwd~  177 (179)
                      +.|+.|++|.-
T Consensus       381 ~~d~~ir~~~~  391 (393)
T d1sq9a_         381 CLDRSIRWFRE  391 (393)
T ss_dssp             ETTTEEEEEEE
T ss_pred             EcCCeEEEEeC
Confidence            99999999963

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=3.9e-23  Score=141.37  Aligned_cols=160  Identities=18%  Similarity=0.256  Sum_probs=123.5

Q ss_pred             CCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeCCeEE
Q 038439            2 AYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSNDELA   68 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~~~l~   68 (179)
                      .|+.|++||+.+++.+.... +...+.++.|+|++..+++.+          ..+..+  +.+|...|.++++++ ++++
T Consensus       179 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~-~~l~  257 (355)
T d1nexb2         179 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD-KFLV  257 (355)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS-SEEE
T ss_pred             ccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccccccccccccc-ceee
Confidence            57899999999999887775 678899999999997666665          334444  888999999999865 6899


Q ss_pred             EecCCCcEEEEecCCCcceeeecCCCCCeEEE-EEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCC
Q 038439           69 SASTDSTLRLWDVKENLPVRTFRGHMNEKNFV-GLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAG  147 (179)
Q Consensus        69 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  147 (179)
                      +++.|+.|++||+++......  .|...+..+ .+++++.++++| .|+.|++||+++++.+.....          . |
T Consensus       258 ~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~----------~-~  323 (355)
T d1nexb2         258 SAAADGSIRGWDANDYSRKFS--YHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANIL----------K-D  323 (355)
T ss_dssp             EECTTSEEEEEETTTCCEEEE--EECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTT----------T-T
T ss_pred             eeecccccccccccccceecc--cccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEec----------C-C
Confidence            999999999999998765443  344445554 456677766655 589999999999987643221          1 2


Q ss_pred             cceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          148 SYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       148 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      ...|.+++|+|+ ..+++++.||+++||.+
T Consensus       324 ~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         324 ADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             CSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             CCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            678999999986 57888899998766644

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=8.1e-23  Score=138.89  Aligned_cols=179  Identities=13%  Similarity=0.109  Sum_probs=119.8

Q ss_pred             CCCccEEEEEcCCce----eEEeecCCCceeEEEEcCCCCeEEEEe-CCC----------cee--eec-ccCceeEEEEe
Q 038439            1 MAYGKVKVWCTRQEA----SVLNIDMKANICCVKYNPGSSNYIAKY-QST----------APC--VHG-HKKAVSYVKFL   62 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~----------~~~--~~~-~~~~i~~~~~~   62 (179)
                      |.||+|+|||+.++.    ....+.|..+|.+++|+|++..++++| ..+          ...  ... +........+.
T Consensus        30 s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~  109 (342)
T d1yfqa_          30 SWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICK  109 (342)
T ss_dssp             ETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEE
T ss_pred             ECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccc
Confidence            479999999987643    334446999999999999876777776 111          111  222 22333444556


Q ss_pred             eC-CeEEEecCCCcEEEEecCCCcceee----ecCC--CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccC
Q 038439           63 SN-DELASASTDSTLRLWDVKENLPVRT----FRGH--MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFS  135 (179)
Q Consensus        63 ~~-~~l~~~~~d~~v~iwd~~~~~~~~~----~~~~--~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~  135 (179)
                      ++ ..+++++.++.+++||++.......    ...+  ........+.+++..+++++.|+.|++||++..+........
T Consensus       110 ~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~  189 (342)
T d1yfqa_         110 YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEE  189 (342)
T ss_dssp             ETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEE
T ss_pred             cccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeee
Confidence            66 8999999999999999875433222    2221  223445677888889999999999999998765432211000


Q ss_pred             CC-------------------------------------------------CCCCCcccCCcceEEEEEEccCCCeEEEE
Q 038439          136 SP-------------------------------------------------DMDDTDEDAGSYFISAVCWKSDSPTMLTA  166 (179)
Q Consensus       136 ~~-------------------------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  166 (179)
                      ..                                                 .........|...+++++|+|++++|++|
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg  269 (342)
T d1yfqa_         190 SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTA  269 (342)
T ss_dssp             CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEE
T ss_pred             cccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEE
Confidence            00                                                 00000112235678999999999999999


Q ss_pred             eCCCcEEEEeecC
Q 038439          167 NSQGTIKVLVLAA  179 (179)
Q Consensus       167 ~~dg~i~iwd~~~  179 (179)
                      +.||.|++||+++
T Consensus       270 ~~Dg~v~vWD~~~  282 (342)
T d1yfqa_         270 GSDGIISCWNLQT  282 (342)
T ss_dssp             ETTSCEEEEETTT
T ss_pred             CCCCEEEEEECCC
Confidence            9999999999864

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=2.2e-22  Score=134.96  Aligned_cols=109  Identities=13%  Similarity=0.231  Sum_probs=85.1

Q ss_pred             EEEeeC-CeEEEecCC-CcEEEEecCCCcceeeec-CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccC
Q 038439           59 VKFLSN-DELASASTD-STLRLWDVKENLPVRTFR-GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFS  135 (179)
Q Consensus        59 ~~~~~~-~~l~~~~~d-~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~  135 (179)
                      .+++++ ..+++++.+ +.+++|++...+....+. .+...+.+++|+|++.+|++|+.||.|++||+.+++..... ..
T Consensus       124 ~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-~~  202 (287)
T d1pgua2         124 SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR-WA  202 (287)
T ss_dssp             EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC-SC
T ss_pred             eeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccc-cc
Confidence            455667 666666665 579999998765555544 36678999999999999999999999999999987654322 11


Q ss_pred             CCCCCCCcccCCcceEEEEEEccC----------CCeEEEEeCCCcEEEEeec
Q 038439          136 SPDMDDTDEDAGSYFISAVCWKSD----------SPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       136 ~~~~~~~~~~~~~~~i~~~~~~~~----------~~~l~~~~~dg~i~iwd~~  178 (179)
                               . |...|.+++|+|.          +.++++|+.|+.|++||++
T Consensus       203 ---------~-h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~  245 (287)
T d1pgua2         203 ---------F-RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK  245 (287)
T ss_dssp             ---------C-CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred             ---------c-cccccceeeecccccccccccCCCCeeEeecCCCeEEEEECC
Confidence                     1 2678999999874          4689999999999999975

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=2.4e-22  Score=142.15  Aligned_cols=87  Identities=10%  Similarity=0.008  Sum_probs=59.8

Q ss_pred             ecCCCCCeEEEEEeeCCCEEEE-------eccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCe
Q 038439           90 FRGHMNEKNFVGLTVNSEYIAC-------GSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPT  162 (179)
Q Consensus        90 ~~~~~~~v~~~~~~~~~~~~~~-------~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  162 (179)
                      +.+|...+..++|+|+++++++       +..+++|++||+++++...........  ... ..+...+..++|+|||++
T Consensus       299 l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~--~~~-~~~~~rv~~~~fSpDGk~  375 (426)
T d1hzua2         299 LQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEW--ADL-GEGAKRVVQPEYNKRGDE  375 (426)
T ss_dssp             EECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHH--HCC-CSSCCCEEEEEECSSSSE
T ss_pred             EecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchh--ccc-CCCCccEEEEEECCCCCE
Confidence            3345556788999999999984       456789999999998765443210000  000 111557999999999997


Q ss_pred             EEEE-----eCCCcEEEEeecC
Q 038439          163 MLTA-----NSQGTIKVLVLAA  179 (179)
Q Consensus       163 l~~~-----~~dg~i~iwd~~~  179 (179)
                      ++.+     +.+|.|+|||.++
T Consensus       376 i~vs~~~~~~~~~~i~v~D~~T  397 (426)
T d1hzua2         376 VWFSVWNGKNDSSALVVVDDKT  397 (426)
T ss_dssp             EEEEECCCTTSCCEEEEEETTT
T ss_pred             EEEEEecCCCCCCeEEEEECCC
Confidence            7543     3578899999764

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.88  E-value=3e-21  Score=132.68  Aligned_cols=121  Identities=7%  Similarity=0.011  Sum_probs=97.0

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-CeEEEe
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DELASA   70 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~   70 (179)
                      ..|++||..+++......+...|.+++|+|++..+++++          ..++..  +..|...+.+++|+|+ .+|+.+
T Consensus        66 ~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~  145 (360)
T d1k32a3          66 DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYG  145 (360)
T ss_dssp             EEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEE
T ss_pred             CEEEEEECCCCcEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeee
Confidence            479999999998887778999999999999997666665          233333  6678888999999999 777754


Q ss_pred             ----------cCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCC
Q 038439           71 ----------STDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEI  125 (179)
Q Consensus        71 ----------~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~  125 (179)
                                ..++.+++||+.+++... +..+...+..+.|+|+|++|++++.++.+.+||...
T Consensus       146 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~  209 (360)
T d1k32a3         146 FPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV  209 (360)
T ss_dssp             EEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred             ccccccceeeccccceeeeccccCceee-ecccccccccccccCCCCEEEEEeCCCceEcccccc
Confidence                      344579999999876544 445677788999999999999999999999998643

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.87  E-value=1e-19  Score=122.19  Aligned_cols=166  Identities=10%  Similarity=0.033  Sum_probs=115.8

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe--------------------------------------
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY--------------------------------------   42 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--------------------------------------   42 (179)
                      +.|++|.+||+++++.++++.....+..++|+|+|+++++++                                      
T Consensus         9 ~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~   88 (301)
T d1l0qa2           9 SESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQV   88 (301)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEE
T ss_pred             CCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccccccccccccccc
Confidence            467889999999999988888878888999999997776655                                      


Q ss_pred             ---------------CCCcee-eecccCceeEEEEeeC-Ce-EEEecCCCcEEEEecCCCcceeeec-------------
Q 038439           43 ---------------QSTAPC-VHGHKKAVSYVKFLSN-DE-LASASTDSTLRLWDVKENLPVRTFR-------------   91 (179)
Q Consensus        43 ---------------~~~~~~-~~~~~~~i~~~~~~~~-~~-l~~~~~d~~v~iwd~~~~~~~~~~~-------------   91 (179)
                                     ..++.+ ...+.....++.++|+ .. ++++..+..+.+|+..+.+.+..+.             
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (301)
T d1l0qa2          89 YVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPD  168 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTT
T ss_pred             cccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeecc
Confidence                           111111 1112234566777777 44 3455667778888776643222111             


Q ss_pred             ----------------------------CCCCCeEEEEEeeCCCEEEEecc---CCcEEEEEcCCCccccccccCCCCCC
Q 038439           92 ----------------------------GHMNEKNFVGLTVNSEYIACGSE---SNEVYVYHKEISKPVTWHRFSSPDMD  140 (179)
Q Consensus        92 ----------------------------~~~~~v~~~~~~~~~~~~~~~~~---d~~v~vwd~~~~~~~~~~~~~~~~~~  140 (179)
                                                  .....+..+++++++..++++..   ++.|++||+.+++.+..+..      
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~------  242 (301)
T d1l0qa2         169 GTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV------  242 (301)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC------
T ss_pred             ccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC------
Confidence                                        01233556789999998766543   46899999999987766554      


Q ss_pred             CCcccCCcceEEEEEEccCCCeE-EEEeCCCcEEEEeecC
Q 038439          141 DTDEDAGSYFISAVCWKSDSPTM-LTANSQGTIKVLVLAA  179 (179)
Q Consensus       141 ~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~  179 (179)
                             ...+..++|+|||++| ++++.++.|++||+++
T Consensus       243 -------~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t  275 (301)
T d1l0qa2         243 -------GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT  275 (301)
T ss_dssp             -------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             -------CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence                   4467899999999987 5677799999999864

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=2.6e-19  Score=126.76  Aligned_cols=167  Identities=8%  Similarity=-0.036  Sum_probs=123.7

Q ss_pred             CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeC----------CCcee-------eecccCceeEEEEee
Q 038439            1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQ----------STAPC-------VHGHKKAVSYVKFLS   63 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----------~~~~~-------~~~~~~~i~~~~~~~   63 (179)
                      ++||+|.|||..+++++..+.....+..++|+|||++++++++          +++..       ..+|...+.+..|+|
T Consensus        39 ~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~Sp  118 (432)
T d1qksa2          39 RDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGW  118 (432)
T ss_dssp             TTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTC
T ss_pred             cCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCC
Confidence            5799999999999999999987778999999999977766652          22211       123444455556677


Q ss_pred             C-CeE-EEecCCCcEEEEecCCCcceeeecCC-----------CCCeEEEEEeeCCCEE-EEeccCCcEEEEEcCCCccc
Q 038439           64 N-DEL-ASASTDSTLRLWDVKENLPVRTFRGH-----------MNEKNFVGLTVNSEYI-ACGSESNEVYVYHKEISKPV  129 (179)
Q Consensus        64 ~-~~l-~~~~~d~~v~iwd~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~-~~~~~d~~v~vwd~~~~~~~  129 (179)
                      | .++ ++++.++.|++||..+++++..+..+           ......+.++|+|..+ ++...++.|.+||..+.+..
T Consensus       119 DG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~  198 (432)
T d1qksa2         119 EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL  198 (432)
T ss_dssp             TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE
T ss_pred             CCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcc
Confidence            8 654 77888999999999999887766542           3445678899998875 56677899999999887654


Q ss_pred             cccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEeec
Q 038439          130 TWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVLA  178 (179)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~  178 (179)
                      .......           ...+..+.|+|+|+++++++. ++.+.++|..
T Consensus       199 ~~~~i~~-----------g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~  237 (432)
T d1qksa2         199 KTTEISA-----------ERFLHDGGLDGSHRYFITAANARNKLVVIDTK  237 (432)
T ss_dssp             EEEEEEC-----------CSSEEEEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred             eEEEEcc-----------cCccccceECCCCCEEEEeccccceEEEeecc
Confidence            4333211           456889999999998877766 5577777764

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.9e-19  Score=119.45  Aligned_cols=160  Identities=16%  Similarity=0.229  Sum_probs=116.4

Q ss_pred             CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeCCCc----------ee--eecccCcee----------
Q 038439            1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQSTA----------PC--VHGHKKAVS----------   57 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~----------~~--~~~~~~~i~----------   57 (179)
                      |.||+|+|||+.+++++.++. |...|.+++|+|+  .+++++..+.          ..  ...+...+.          
T Consensus        34 s~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (342)
T d2ovrb2          34 SDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV  111 (342)
T ss_dssp             ETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEE
T ss_pred             eCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeeccccccc
Confidence            048999999999999999886 8899999999985  4555542211          11  111111111          


Q ss_pred             ----------------------------EEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCE
Q 038439           58 ----------------------------YVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEY  108 (179)
Q Consensus        58 ----------------------------~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  108 (179)
                                                  .....+. ..+++++.|+.+++||.+..+.+..+..|...+  ..+.+++.+
T Consensus       112 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~  189 (342)
T d2ovrb2         112 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV--YSLQFDGIH  189 (342)
T ss_dssp             EEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCE--EEEEECSSE
T ss_pred             ccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCccccc--ccccCCCCE
Confidence                                        1112233 567888889999999998888888888776655  445668899


Q ss_pred             EEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          109 IACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       109 ~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      +++++.|+.|++||++.++.+.....  +          ...+.+++++  +++|++++.||.|++||+.
T Consensus       190 l~s~~~dg~i~~~d~~~~~~~~~~~~--~----------~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~  245 (342)
T d2ovrb2         190 VVSGSLDTSIRVWDVETGNCIHTLTG--H----------QSLTSGMELK--DNILVSGNADSTVKIWDIK  245 (342)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECC--C----------CSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred             EEEEeCCCeEEEeecccceeeeEecc--c----------ccceeEEecC--CCEEEEEcCCCEEEEEecc
Confidence            99999999999999999887765432  1          5567777665  5799999999999999975

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=4.8e-19  Score=120.00  Aligned_cols=151  Identities=9%  Similarity=0.007  Sum_probs=110.6

Q ss_pred             CCCceeEEEEcCCCCeEEEEe----------CCCce----e-eecccCceeEEEEeeC--CeEEEecCCCcEEEEecCCC
Q 038439           22 MKANICCVKYNPGSSNYIAKY----------QSTAP----C-VHGHKKAVSYVKFLSN--DELASASTDSTLRLWDVKEN   84 (179)
Q Consensus        22 ~~~~v~~~~~~~~~~~~~~~~----------~~~~~----~-~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~   84 (179)
                      |.+.|++|+|+|+++.|++++          .....    . ..+|..+|.+++|+|+  .++++|+.|+.|++|++...
T Consensus        10 h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~   89 (342)
T d1yfqa_          10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS   89 (342)
T ss_dssp             CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSS
T ss_pred             CCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccc
Confidence            788999999999997666655          11111    1 4469999999999998  47899999999999999987


Q ss_pred             cceeeecCCCCC-eEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeE
Q 038439           85 LPVRTFRGHMNE-KNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTM  163 (179)
Q Consensus        85 ~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  163 (179)
                      ........+... .....+.++...+++++.++.+++||+++..............      ..........+.+.+..+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  163 (342)
T d1yfqa_          90 PSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN------NTKVKNKIFTMDTNSSRL  163 (342)
T ss_dssp             SSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS------SSSSCCCEEEEEECSSEE
T ss_pred             cccccccccccccccccccccccccccccccccccceeeccccccceeeecccccc------cccceeeeeeeeccCCce
Confidence            776666554433 3455567788899999999999999998755433222111100      002234456677889999


Q ss_pred             EEEeCCCcEEEEeec
Q 038439          164 LTANSQGTIKVLVLA  178 (179)
Q Consensus       164 ~~~~~dg~i~iwd~~  178 (179)
                      ++++.|+.|++||++
T Consensus       164 ~~~~~d~~i~~~~~~  178 (342)
T d1yfqa_         164 IVGMNNSQVQWFRLP  178 (342)
T ss_dssp             EEEESTTEEEEEESS
T ss_pred             eeecCCCcEEEEecc
Confidence            999999999999975

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=1.3e-18  Score=118.18  Aligned_cols=68  Identities=9%  Similarity=-0.002  Sum_probs=54.7

Q ss_pred             eEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439           97 KNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus        97 v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  176 (179)
                      +..+.++|++.+++.+  ++.+++||+++++.+.....             ...+.+++|+|||++|++++.++.|++||
T Consensus       243 ~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~-------------~~~~~~~~~s~dG~~l~v~~~~~~i~v~D  307 (337)
T d1pbyb_         243 YFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-------------PHSYYSVNVSTDGSTVWLGGALGDLAAYD  307 (337)
T ss_dssp             EEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-------------SSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred             eEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcC-------------CCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            3445566667666554  57899999999988877654             44678899999999999999999999999


Q ss_pred             ecC
Q 038439          177 LAA  179 (179)
Q Consensus       177 ~~~  179 (179)
                      +++
T Consensus       308 ~~t  310 (337)
T d1pbyb_         308 AET  310 (337)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            864

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.77  E-value=1.1e-17  Score=113.88  Aligned_cols=69  Identities=9%  Similarity=-0.002  Sum_probs=53.1

Q ss_pred             eEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439           97 KNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV  176 (179)
Q Consensus        97 v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  176 (179)
                      +..+.+++++.+++... ++.|.+||+.+++.+.....             ...+.+++|+|||++|++++.|+.|++||
T Consensus       254 ~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~-------------~~~~~~va~s~DG~~l~v~~~d~~v~v~D  319 (346)
T d1jmxb_         254 YFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL-------------DHTYYCVAFDKKGDKLYLGGTFNDLAVFN  319 (346)
T ss_dssp             EEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC-------------SSCCCEEEECSSSSCEEEESBSSEEEEEE
T ss_pred             eEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcC-------------CCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence            33455556665555544 35789999999887766554             44688999999999999999999999999


Q ss_pred             ecC
Q 038439          177 LAA  179 (179)
Q Consensus       177 ~~~  179 (179)
                      +++
T Consensus       320 ~~t  322 (346)
T d1jmxb_         320 PDT  322 (346)
T ss_dssp             TTT
T ss_pred             Ccc
Confidence            864

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=8.5e-18  Score=111.68  Aligned_cols=112  Identities=18%  Similarity=0.271  Sum_probs=92.6

Q ss_pred             eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCc
Q 038439           49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK  127 (179)
Q Consensus        49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~  127 (179)
                      ..+|...|+|++|  + ++|++|+.|++|++||+.+++++..+++|...|.+++|  ++++|++|+.|+.|++|+++.+.
T Consensus        11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~   86 (293)
T d1p22a2          11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE   86 (293)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred             cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccc
Confidence            5567888998764  6 89999999999999999999999999999999988876  67899999999999999999887


Q ss_pred             cccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          128 PVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ........            .  .....+.+....++++..++.+.+|++.
T Consensus        87 ~~~~~~~~------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (293)
T d1p22a2          87 MLNTLIHH------------C--EAVLHLRFNNGMMVTCSKDRSIAVWDMA  123 (293)
T ss_dssp             EEEEECCC------------C--SCEEEEECCTTEEEEEETTSCEEEEECS
T ss_pred             cccccccc------------c--cccccccccccceeecccccceeEeecc
Confidence            66554421            1  1223455667789999999999999975

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.69  E-value=1.1e-16  Score=112.89  Aligned_cols=105  Identities=6%  Similarity=-0.011  Sum_probs=84.2

Q ss_pred             eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCccc
Q 038439           66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDED  145 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  145 (179)
                      ++++.+.|+.|++||+.+++.+..+..+. .+..++|+|||+++++++.|+.|++||+.+++.....+....      ..
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~------~~  106 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG------IE  106 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC------SE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC------CC
Confidence            45788899999999999999999998764 589999999999999999999999999999886544432211      01


Q ss_pred             CCcceEEEEEEccCCCeEEEE-eCCCcEEEEeec
Q 038439          146 AGSYFISAVCWKSDSPTMLTA-NSQGTIKVLVLA  178 (179)
Q Consensus       146 ~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~  178 (179)
                       |...+.+++|+|||++++++ ..++.+.+||.+
T Consensus       107 -~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~  139 (426)
T d1hzua2         107 -ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE  139 (426)
T ss_dssp             -EEEEEECCSTTCTTTEEEEEEEESSEEEEEETT
T ss_pred             -CcceEEeeeecCCCCEEEEeecCCCeEEEEcCC
Confidence             14556777888999987555 478999999975

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.67  E-value=2.6e-16  Score=111.24  Aligned_cols=106  Identities=8%  Similarity=-0.041  Sum_probs=84.5

Q ss_pred             eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCccc
Q 038439           66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDED  145 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  145 (179)
                      ++++.+.++.|.+||..+++.+..+..+ ..+..++|+|||+++++++.|+.+.+||+.+++.....+....       .
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~-------~  105 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-------S  105 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-------S
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecC-------C
Confidence            3589999999999999999999999876 4689999999999999999999999999998775433322110       1


Q ss_pred             CCcceEEEEEEccCCCeE-EEEeCCCcEEEEeecC
Q 038439          146 AGSYFISAVCWKSDSPTM-LTANSQGTIKVLVLAA  179 (179)
Q Consensus       146 ~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~  179 (179)
                      .+...+.+..|+|||++| ++++.++.+++||.++
T Consensus       106 ~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t  140 (432)
T d1qksa2         106 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET  140 (432)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred             CCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcc
Confidence            114456667788999986 6677899999999753

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.63  E-value=1.5e-14  Score=97.79  Aligned_cols=130  Identities=9%  Similarity=0.054  Sum_probs=99.2

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe--------C-------------------------------
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY--------Q-------------------------------   43 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--------~-------------------------------   43 (179)
                      ++.+.+||..+++.+..+.....+..++|+|+|..+++.+        .                               
T Consensus       114 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (337)
T d1pbyb_         114 PTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHE  193 (337)
T ss_dssp             CCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCT
T ss_pred             ccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCccccceecCCcceeecccc
Confidence            5678999999999999998888899999999998777665        0                               


Q ss_pred             ----------------------------------CCcee---eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCc
Q 038439           44 ----------------------------------STAPC---VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENL   85 (179)
Q Consensus        44 ----------------------------------~~~~~---~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~   85 (179)
                                                        .+...   +..+...+..+.++|+ ..++.+  ++.+++||+.+++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~  271 (337)
T d1pbyb_         194 SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA  271 (337)
T ss_dssp             TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE
T ss_pred             ccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCc
Confidence                                              00000   1122333444555566 444443  5789999999999


Q ss_pred             ceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccC
Q 038439           86 PVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFS  135 (179)
Q Consensus        86 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~  135 (179)
                      .+..+. +...+.+++|+|||+++++++.++.|.+||.++.+.+..+...
T Consensus       272 ~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~  320 (337)
T d1pbyb_         272 SIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             EEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             EEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEECC
Confidence            888875 4566889999999999999999999999999999988776653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=3.7e-14  Score=95.93  Aligned_cols=171  Identities=7%  Similarity=0.075  Sum_probs=115.3

Q ss_pred             CCCccEEEEEcCCc---eeEEeecCCCceeEEEEcCCCCeEEEEeCCCcee----------------eecccCceeEEEE
Q 038439            1 MAYGKVKVWCTRQE---ASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPC----------------VHGHKKAVSYVKF   61 (179)
Q Consensus         1 ~~d~~i~vwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~~~~~   61 (179)
                      ++|++|++|++.+.   +.++.+++.+.+..++|+|||+.|++++.....+                ...+...+..++|
T Consensus        11 ~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~   90 (333)
T d1ri6a_          11 PESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHIST   90 (333)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEE
T ss_pred             CCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEE
Confidence            36899999998754   4456677899999999999998887776211111                1223345678999


Q ss_pred             eeC-CeEEEecC-CCcEEEEecCCCcceee--ecCCCCCeEEEEEeeCCCEEEEecc-CCcEEEEEcCCCccccccccCC
Q 038439           62 LSN-DELASAST-DSTLRLWDVKENLPVRT--FRGHMNEKNFVGLTVNSEYIACGSE-SNEVYVYHKEISKPVTWHRFSS  136 (179)
Q Consensus        62 ~~~-~~l~~~~~-d~~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~-d~~v~vwd~~~~~~~~~~~~~~  136 (179)
                      +|+ +++++++. ++.+.+|+.........  ...+...+.++.++|+++++++++. +..+.+|+..............
T Consensus        91 spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (333)
T d1ri6a_          91 DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAE  170 (333)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE
T ss_pred             cCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeecee
Confidence            999 77777764 77899998876544332  3345666788999999998776654 5679999987754432221100


Q ss_pred             CCCCCCcccCCcceEEEEEEccCCCeEEEEe-CCCcEEEEee
Q 038439          137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTAN-SQGTIKVLVL  177 (179)
Q Consensus       137 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~  177 (179)
                      ..      .........++|++++..++... ..+...+|+.
T Consensus       171 ~~------~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~  206 (333)
T d1ri6a_         171 VT------TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWEL  206 (333)
T ss_dssp             EE------CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEES
T ss_pred             ee------eecCCCccEEEEeccceeEEeeccccCceEEEee
Confidence            00      00044568899999998877655 4556667654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.61  E-value=8.8e-14  Score=92.74  Aligned_cols=132  Identities=11%  Similarity=-0.003  Sum_probs=102.0

Q ss_pred             CCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCC-----------Ccee-eecccCceeEEEEeeC-CeEE
Q 038439            2 AYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQS-----------TAPC-VHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----------~~~~-~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      .++.+.+|+..+.+.+..+.....+..++++|++..++++...           .+.. ..........+.++++ ..++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  215 (301)
T d1l0qa2         136 GDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAY  215 (301)
T ss_dssp             TTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEE
T ss_pred             cccceeeeeccccceeeecccCCCceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccc
Confidence            4678999999999999999888889999999999777776511           1111 2223345677889998 6555


Q ss_pred             Eec---CCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEE-EEeccCCcEEEEEcCCCcccccccc
Q 038439           69 SAS---TDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI-ACGSESNEVYVYHKEISKPVTWHRF  134 (179)
Q Consensus        69 ~~~---~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~d~~v~vwd~~~~~~~~~~~~  134 (179)
                      .+.   .++.|.+||+.+++.+..+.. ...+..++|+|||+++ ++++.++.|++||+++++.+..+..
T Consensus       216 v~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         216 VTNVDKYFNTVSMIDTGTNKITARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             EEEECSSCCEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             cccccceeeeeeeeecCCCeEEEEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence            443   356899999999988887764 4467899999999986 5777899999999999988877654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.61  E-value=2e-13  Score=93.88  Aligned_cols=165  Identities=10%  Similarity=0.013  Sum_probs=105.9

Q ss_pred             CCccEEEEEcCCceeEEeecCC-C-------ceeEEEEcCCCCeEEEEe-CCCcee---------eecccCceeEEEEee
Q 038439            2 AYGKVKVWCTRQEASVLNIDMK-A-------NICCVKYNPGSSNYIAKY-QSTAPC---------VHGHKKAVSYVKFLS   63 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~~-~-------~v~~~~~~~~~~~~~~~~-~~~~~~---------~~~~~~~i~~~~~~~   63 (179)
                      .++.|.+||..+++.+..+... .       ....+.|+|++..+++.. .....+         ...+.....++.++|
T Consensus        95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  174 (373)
T d2madh_          95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHP  174 (373)
T ss_pred             cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEec
Confidence            4688999999999988777532 2       235678888887665554 111111         223344456778888


Q ss_pred             C--CeEEEecCCCcEEEEecCCCcceeeecC-------------------------------------------------
Q 038439           64 N--DELASASTDSTLRLWDVKENLPVRTFRG-------------------------------------------------   92 (179)
Q Consensus        64 ~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~-------------------------------------------------   92 (179)
                      +  ..+++.+.|+.+.+|+...++.......                                                 
T Consensus       175 ~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  254 (373)
T d2madh_         175 GAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDA  254 (373)
T ss_pred             CCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeecc
Confidence            8  4567788888898888765432211100                                                 


Q ss_pred             C----------CCCeEEEEEeeCCCEEE----------EeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEE
Q 038439           93 H----------MNEKNFVGLTVNSEYIA----------CGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFIS  152 (179)
Q Consensus        93 ~----------~~~v~~~~~~~~~~~~~----------~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  152 (179)
                      .          ......+++++++..++          +...++.+.+||..+++.+..+..             ...+.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~-------------~~~~~  321 (373)
T d2madh_         255 LSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-------------GHDVD  321 (373)
T ss_pred             ccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecC-------------CCCee
Confidence            0          00112234555544433          334456788888888887766544             55688


Q ss_pred             EEEEccCCCe--EEEEeCCCcEEEEeecC
Q 038439          153 AVCWKSDSPT--MLTANSQGTIKVLVLAA  179 (179)
Q Consensus       153 ~~~~~~~~~~--l~~~~~dg~i~iwd~~~  179 (179)
                      .++|+|||+.  +++++.|+.|++||+++
T Consensus       322 ~~a~spDG~~~l~vt~~~d~~v~v~D~~t  350 (373)
T d2madh_         322 AISVAQDGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             EEEECCCCCEEEEEEeCCCCeEEEEECCC
Confidence            9999999984  46788999999999864

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.55  E-value=1e-14  Score=99.07  Aligned_cols=114  Identities=9%  Similarity=0.061  Sum_probs=87.3

Q ss_pred             EEEeeC-CeEEEecCCCcEEEEecCCCcceeeecC-CCCCeEEEEEeeCCCEE-EEeccCCcEEEEEcCCCccccccccC
Q 038439           59 VKFLSN-DELASASTDSTLRLWDVKENLPVRTFRG-HMNEKNFVGLTVNSEYI-ACGSESNEVYVYHKEISKPVTWHRFS  135 (179)
Q Consensus        59 ~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~-~~~~~d~~v~vwd~~~~~~~~~~~~~  135 (179)
                      ++++++ .++++++.++.|.+||+.+++.+.+++. +...+..++|+|||+++ +++..++.|.+||+.+++.+......
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            357788 8999999999999999999999888764 45567899999999987 45567899999999999887655443


Q ss_pred             CCCCCCCcccCCcceEEEEEEccCCCeEEEEe------------CCCcEEEEeec
Q 038439          136 SPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN------------SQGTIKVLVLA  178 (179)
Q Consensus       136 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------------~dg~i~iwd~~  178 (179)
                      ....     .. ...+..++|+|||+++++++            .++.+.+|+..
T Consensus        82 ~~~~-----~~-~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~  130 (346)
T d1jmxb_          82 SVPG-----EV-GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA  130 (346)
T ss_dssp             CSTT-----EE-EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGG
T ss_pred             cccc-----cc-CCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecc
Confidence            2210     00 22356789999999998775            36677888754

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.54  E-value=5.6e-13  Score=90.95  Aligned_cols=165  Identities=8%  Similarity=-0.046  Sum_probs=114.4

Q ss_pred             CCccEEEEEcCCceeEEeecCCC--------ceeEEEEcCCCCeEEEEeCCCce-e-------eecccCceeEEEEeeC-
Q 038439            2 AYGKVKVWCTRQEASVLNIDMKA--------NICCVKYNPGSSNYIAKYQSTAP-C-------VHGHKKAVSYVKFLSN-   64 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~i~~~~~~~~-   64 (179)
                      .+..+.+|+..+++.+..+....        ....+.+++++..+++....... .       ...+...+....+.++ 
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (355)
T d2bbkh_         127 PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKA  206 (355)
T ss_dssp             SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTT
T ss_pred             CCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCC
Confidence            35678889999888877765332        34567889998666655422111 1       2233444556677777 


Q ss_pred             CeEEEecCCCcEEEEecCCCccee--eecCC----------CCCeEEEEEeeCCCEEEEeccC----------CcEEEEE
Q 038439           65 DELASASTDSTLRLWDVKENLPVR--TFRGH----------MNEKNFVGLTVNSEYIACGSES----------NEVYVYH  122 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~----------~~~v~~~~~~~~~~~~~~~~~d----------~~v~vwd  122 (179)
                      ..++.++.++.+.+|++..++...  ....+          ......+++++++..++....+          ..|.+||
T Consensus       207 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d  286 (355)
T d2bbkh_         207 GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD  286 (355)
T ss_dssp             TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred             CeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEe
Confidence            888999999999999998765321  11111          1223458899999887765443          3699999


Q ss_pred             cCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCC--eEEEEeCCCcEEEEeecC
Q 038439          123 KEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSP--TMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~iwd~~~  179 (179)
                      ..+++.+..+..             ...+.+++|+|||+  +++++..|+.|++||+++
T Consensus       287 ~~t~~~~~~~~~-------------~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~t  332 (355)
T d2bbkh_         287 AKTGERLAKFEM-------------GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES  332 (355)
T ss_dssp             TTTCCEEEEEEE-------------EEEECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred             CCCCcEEEEecC-------------CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCC
Confidence            999988776654             55688999999998  345677799999999864

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=3.5e-13  Score=91.10  Aligned_cols=104  Identities=9%  Similarity=0.117  Sum_probs=74.8

Q ss_pred             eEEEecCCCcEEEEecCCCcceeee--cCCCCCeEEEEEeeCCCEEEEe-ccCCcEEEEEcCCCccccccccCCCCCCCC
Q 038439           66 ELASASTDSTLRLWDVKENLPVRTF--RGHMNEKNFVGLTVNSEYIACG-SESNEVYVYHKEISKPVTWHRFSSPDMDDT  142 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~  142 (179)
                      .+++++.++.|++|++.....+..+  ..+...+..++|+|||++|+++ ..|+.|.+|++..............     
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~-----   80 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA-----   80 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE-----
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecc-----
Confidence            4578889999999999765433322  2467788999999999998655 4589999999987654322211100     


Q ss_pred             cccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEeec
Q 038439          143 DEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVLA  178 (179)
Q Consensus       143 ~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~  178 (179)
                          ....+..++|+|||++|++++. ++.+.+|+..
T Consensus        81 ----~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~  113 (333)
T d1ri6a_          81 ----LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE  113 (333)
T ss_dssp             ----CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ----cCCCceEEEEcCCCCEEeecccCCCceeeeccc
Confidence                0344677999999999998875 6688888754

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.43  E-value=3e-11  Score=83.10  Aligned_cols=32  Identities=9%  Similarity=0.057  Sum_probs=25.4

Q ss_pred             cceEEEEEEccCCCe--EEEEeCCCcEEEEeecC
Q 038439          148 SYFISAVCWKSDSPT--MLTANSQGTIKVLVLAA  179 (179)
Q Consensus       148 ~~~i~~~~~~~~~~~--l~~~~~dg~i~iwd~~~  179 (179)
                      ...+..++|+|||+.  ++++..++.|++||..+
T Consensus       313 ~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~t  346 (368)
T d1mdah_         313 GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             EEEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCC
Confidence            456788999999973  45667789999999764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.38  E-value=2.5e-11  Score=83.25  Aligned_cols=139  Identities=13%  Similarity=-0.022  Sum_probs=99.0

Q ss_pred             CCCceeEEEEcCCCCeEEEEe---------------CCCcee--eecccCceeEEEEeeC-CeEEEec----------CC
Q 038439           22 MKANICCVKYNPGSSNYIAKY---------------QSTAPC--VHGHKKAVSYVKFLSN-DELASAS----------TD   73 (179)
Q Consensus        22 ~~~~v~~~~~~~~~~~~~~~~---------------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~----------~d   73 (179)
                      +..++.+++++|+|.+++++.               .+++.+  +..+..  ..+.|+|| .++++++          .+
T Consensus        19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~~~~   96 (373)
T d2madh_          19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL--PNPVAAHSGSEFALASTSFSRIAKGKRT   96 (373)
T ss_pred             CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCC--ccEEEcCCCCEEEEEeecCCcccccccc
Confidence            667889999999998776653               344444  333333  36889999 7777664          45


Q ss_pred             CcEEEEecCCCcceeeecCCCCCe-------EEEEEeeCCCEEEEec--cCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439           74 STLRLWDVKENLPVRTFRGHMNEK-------NFVGLTVNSEYIACGS--ESNEVYVYHKEISKPVTWHRFSSPDMDDTDE  144 (179)
Q Consensus        74 ~~v~iwd~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~~~~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~  144 (179)
                      +.|.+||..+++.+..+..+....       ..+.|+++++.++...  .++.+.+|+....+....             
T Consensus        97 ~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~-------------  163 (373)
T d2madh_          97 DYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQL-------------  163 (373)
T ss_pred             eEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEE-------------
Confidence            789999999998887776554332       4578899988765543  456788888877665433             


Q ss_pred             cCCcceEEEEEEccCCCeE-EEEeCCCcEEEEeec
Q 038439          145 DAGSYFISAVCWKSDSPTM-LTANSQGTIKVLVLA  178 (179)
Q Consensus       145 ~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~  178 (179)
                         .....++.++|+++.+ ++.+.|+.+.+|+..
T Consensus       164 ---~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~  195 (373)
T d2madh_         164 ---LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHA  195 (373)
T ss_pred             ---eccceeEEEecCCCcEEEEEcCCCeEEEEEcC
Confidence               2235678899988755 678889999999864

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.36  E-value=4.7e-12  Score=89.86  Aligned_cols=102  Identities=15%  Similarity=0.138  Sum_probs=68.1

Q ss_pred             CCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCC------cccC
Q 038439           73 DSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDT------DEDA  146 (179)
Q Consensus        73 d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~------~~~~  146 (179)
                      ++.+.+||+.+++ +..+..+...+..+.|+|||+.+|.. .++.+.+|+..+++...............      ....
T Consensus        91 ~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~  168 (470)
T d2bgra1          91 TASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE  168 (470)
T ss_dssp             EEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred             CceEEEEECCCCc-ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeee
Confidence            4678999999876 45677788889999999999999885 47789999999887654432211100000      0000


Q ss_pred             CcceEEEEEEccCCCeEEEEeCCCc-EEEEe
Q 038439          147 GSYFISAVCWKSDSPTMLTANSQGT-IKVLV  176 (179)
Q Consensus       147 ~~~~i~~~~~~~~~~~l~~~~~dg~-i~iwd  176 (179)
                      .......+.|+|||+.|+....|.. +..|.
T Consensus       169 ~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             TSSSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred             ecCCccccEECCCCCccceeEecCCcCceEE
Confidence            0223355789999999999876543 44443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.21  E-value=3.7e-10  Score=78.91  Aligned_cols=164  Identities=9%  Similarity=0.019  Sum_probs=100.9

Q ss_pred             CCCccEEEEEcCCceeEEeecC-------------------------------CCceeEEEEcCCCCeEEEEe-------
Q 038439            1 MAYGKVKVWCTRQEASVLNIDM-------------------------------KANICCVKYNPGSSNYIAKY-------   42 (179)
Q Consensus         1 ~~d~~i~vwd~~~~~~~~~~~~-------------------------------~~~v~~~~~~~~~~~~~~~~-------   42 (179)
                      +.+|.|.+|++.+++.++.+..                               .-......++|||+.+++..       
T Consensus        18 g~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVa   97 (441)
T d1qnia2          18 GHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVA   97 (441)
T ss_dssp             BTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTTTEEE
T ss_pred             CCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCCCEEE
Confidence            4689999999999998887631                               11133444578997777776       


Q ss_pred             ----CCCcee--e-ecccCceeEEEEeeC-C--eEEEecCCC-----------------cEEEEecCCCcceeeecCCCC
Q 038439           43 ----QSTAPC--V-HGHKKAVSYVKFLSN-D--ELASASTDS-----------------TLRLWDVKENLPVRTFRGHMN   95 (179)
Q Consensus        43 ----~~~~~~--~-~~~~~~i~~~~~~~~-~--~l~~~~~d~-----------------~v~iwd~~~~~~~~~~~~~~~   95 (179)
                          .+.+..  + ..+......++|+|+ +  +++..+.+.                 .+..+|..+.+...++.. .+
T Consensus        98 vIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v-~~  176 (441)
T d1qnia2          98 RIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIV-DG  176 (441)
T ss_dssp             EEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEE-SS
T ss_pred             EEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEec-CC
Confidence                233332  2 234567888999998 3  343333322                 234577777766666653 33


Q ss_pred             CeEEEEEeeCCCEEEEeccCC-c--------------EEEEEc--------------------------CCCcccccccc
Q 038439           96 EKNFVGLTVNSEYIACGSESN-E--------------VYVYHK--------------------------EISKPVTWHRF  134 (179)
Q Consensus        96 ~v~~~~~~~~~~~~~~~~~d~-~--------------v~vwd~--------------------------~~~~~~~~~~~  134 (179)
                      ....++++|+|+++++.+.+. .              +.+.+.                          ...+.+..+..
T Consensus       177 ~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPv  256 (441)
T d1qnia2         177 NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPV  256 (441)
T ss_dssp             CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECC
T ss_pred             CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeC
Confidence            467899999999988776542 1              222221                          11111111111


Q ss_pred             CCCCCCCCcccCCcceEEEEEEccCCCeEEE-EeCCCcEEEEeec
Q 038439          135 SSPDMDDTDEDAGSYFISAVCWKSDSPTMLT-ANSQGTIKVLVLA  178 (179)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~iwd~~  178 (179)
                                   ......+.++|||+++++ +..++++.|||++
T Consensus       257 -------------gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~  288 (441)
T d1qnia2         257 -------------PKNPHGLNTSPDGKYFIANGKLSPTVSVIAID  288 (441)
T ss_dssp             -------------BSSCCCEEECTTSCEEEEECTTSSBEEEEEGG
T ss_pred             -------------CCCccCceECCCCCEEEEeCCcCCcEEEEEee
Confidence                         223567899999998765 5669999999975

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.21  E-value=3.5e-09  Score=71.73  Aligned_cols=158  Identities=10%  Similarity=0.032  Sum_probs=97.8

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe--------------------CCCcee--eecc-------c
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY--------------------QSTAPC--VHGH-------K   53 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--------------------~~~~~~--~~~~-------~   53 (179)
                      +++|.+||..+++.+.++.... ...++|+|||+.++++.                    .+++.+  +..+       .
T Consensus        27 ~~~v~v~D~~tg~~~~~~~~g~-~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~  105 (355)
T d2bbkh_          27 VTQQFVIDGEAGRVIGMIDGGF-LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVG  105 (355)
T ss_dssp             SEEEEEEETTTTEEEEEEEECS-SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred             cCeEEEEECCCCcEEEEEECCC-CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecC
Confidence            5679999999999988886332 33799999998777653                    222222  1111       1


Q ss_pred             CceeEEEEeeC-CeEEEec--CCCcEEEEecCCCcceeeecCCCC-------CeEEEEEeeCCCEEEEe-ccCCcEEEEE
Q 038439           54 KAVSYVKFLSN-DELASAS--TDSTLRLWDVKENLPVRTFRGHMN-------EKNFVGLTVNSEYIACG-SESNEVYVYH  122 (179)
Q Consensus        54 ~~i~~~~~~~~-~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~~-~~d~~v~vwd  122 (179)
                      .....+.|+|+ ..++.++  .+..+.+|+..+++.+..+..+..       ....+.+++++..++.. ..++.+.+++
T Consensus       106 ~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~  185 (355)
T d2bbkh_         106 TYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH  185 (355)
T ss_dssp             CCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE
T ss_pred             CCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEe
Confidence            12345789999 6666554  467899999999888777664322       12234455555444332 2233344444


Q ss_pred             cCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          123 KEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ........                 ...+....+.+++..++.++.++.+++|++.
T Consensus       186 ~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  224 (355)
T d2bbkh_         186 TEVFHPED-----------------EFLINHPAYSQKAGRLVWPTYTGKIHQIDLS  224 (355)
T ss_dssp             CCCCSCTT-----------------SCBCSCCEEETTTTEEEEEBTTSEEEEEECT
T ss_pred             ccccccee-----------------cceeeeccccCCCCeEEEecCCCeEEEEecC
Confidence            33322211                 2223445677788888899999999999875

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.21  E-value=9.7e-10  Score=76.79  Aligned_cols=175  Identities=9%  Similarity=-0.065  Sum_probs=109.3

Q ss_pred             CCccEEEEEcCCceeEEeec--CCCceeEEEEcCCCCeEEEEe---------CCCce---------e--eecc-------
Q 038439            2 AYGKVKVWCTRQEASVLNID--MKANICCVKYNPGSSNYIAKY---------QSTAP---------C--VHGH-------   52 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~---------~~~~~---------~--~~~~-------   52 (179)
                      .+++|.++|+.+++..+.+.  ....+..++|+|+++..+++.         +.++.         +  +...       
T Consensus        92 ~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~q  171 (441)
T d1qnia2          92 ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQ  171 (441)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEE
T ss_pred             CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEE
Confidence            46789999999998877654  577899999999997654443         00000         0  1111       


Q ss_pred             ---cCceeEEEEeeC-CeEEEecCC-----------------------------------------CcEEEEecCCCcce
Q 038439           53 ---KKAVSYVKFLSN-DELASASTD-----------------------------------------STLRLWDVKENLPV   87 (179)
Q Consensus        53 ---~~~i~~~~~~~~-~~l~~~~~d-----------------------------------------~~v~iwd~~~~~~~   87 (179)
                         ......+.++|+ +++++++.+                                         +.+.+++....+.+
T Consensus       172 I~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~  251 (441)
T d1qnia2         172 VIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFT  251 (441)
T ss_dssp             EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSE
T ss_pred             EecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceE
Confidence               123567888888 666655433                                         23344444444555


Q ss_pred             eeecCCCCCeEEEEEeeCCCEEE-EeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEE
Q 038439           88 RTFRGHMNEKNFVGLTVNSEYIA-CGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTA  166 (179)
Q Consensus        88 ~~~~~~~~~v~~~~~~~~~~~~~-~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  166 (179)
                      ..+....+ ...+.++|||++++ ++..+++|.+||+++.+....-.+..........+. .-.....+|.++|+.+.+.
T Consensus       252 ~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~-glgplh~~fd~~g~~yts~  329 (441)
T d1qnia2         252 RYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPEL-GLGPLHTTFDGRGNAYTTL  329 (441)
T ss_dssp             EEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBC-CSCEEEEEECSSSEEEEEE
T ss_pred             EEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeeccc-ccCcccceecCCceEEEcc
Confidence            55654443 56799999999865 567799999999876432211111000000000000 2235667899999988889


Q ss_pred             eCCCcEEEEeec
Q 038439          167 NSQGTIKVLVLA  178 (179)
Q Consensus       167 ~~dg~i~iwd~~  178 (179)
                      ..|..|..|++.
T Consensus       330 ~~ds~v~kw~~~  341 (441)
T d1qnia2         330 FIDSQVCKWNIA  341 (441)
T ss_dssp             TTTTEEEEEEHH
T ss_pred             cccceEEEeccc
Confidence            999999999963

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.16  E-value=2.1e-10  Score=81.21  Aligned_cols=107  Identities=10%  Similarity=0.134  Sum_probs=80.2

Q ss_pred             eEEEEeeCCeEEEecCCCcEEEEecCCCcceeeec-----CCCCCeEEEEEeeCCCEEEEecc---------CCcEEEEE
Q 038439           57 SYVKFLSNDELASASTDSTLRLWDVKENLPVRTFR-----GHMNEKNFVGLTVNSEYIACGSE---------SNEVYVYH  122 (179)
Q Consensus        57 ~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~---------d~~v~vwd  122 (179)
                      ..+.|.+++.++. ..++.+.+||+.+++....+.     .+...+.++.|+|||++|+.++.         ++.+.+||
T Consensus        20 ~~~~W~~d~~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          20 YSLRWISDHEYLY-KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCCEECSSSEEEE-ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             cCCEeCCCCEEEE-EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            3577888844444 347789999999987665443     34567899999999999987743         56789999


Q ss_pred             cCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          123 KEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      +.+++.......             ...+..+.|+|||+.++... ++.+++|++.
T Consensus        99 ~~~~~~~~l~~~-------------~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~  140 (470)
T d2bgra1          99 LNKRQLITEERI-------------PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEP  140 (470)
T ss_dssp             TTTTEECCSSCC-------------CTTEEEEEECSSTTCEEEEE-TTEEEEESST
T ss_pred             CCCCcccccccC-------------CccccccccccCcceeeEee-cccceEEECC
Confidence            998875432221             55688999999999999864 6688998864

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=1.3e-08  Score=66.45  Aligned_cols=160  Identities=10%  Similarity=0.079  Sum_probs=90.0

Q ss_pred             cEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-------------CCCcee-eecccCceeEEEEeeC-CeEEE
Q 038439            5 KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-------------QSTAPC-VHGHKKAVSYVKFLSN-DELAS   69 (179)
Q Consensus         5 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~~~~i~~~~~~~~-~~l~~   69 (179)
                      .|.|.|...............+.+.+|||||+.++.+.             ..+... +..+........|+|+ ..++.
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~   99 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAF   99 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeE
Confidence            57787877666666667888899999999998777665             111111 4445566677788888 55444


Q ss_pred             ecC-CCcEEE--EecCCC-------------------------------------------cceeeecCCCCCeEEEEEe
Q 038439           70 AST-DSTLRL--WDVKEN-------------------------------------------LPVRTFRGHMNEKNFVGLT  103 (179)
Q Consensus        70 ~~~-d~~v~i--wd~~~~-------------------------------------------~~~~~~~~~~~~v~~~~~~  103 (179)
                      .+. ++...+  +.....                                           .....+...........|+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s  179 (269)
T d2hqsa1         100 ALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVS  179 (269)
T ss_dssp             EECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEEC
T ss_pred             eeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccc
Confidence            332 222111  111110                                           0001111122334556789


Q ss_pred             eCCCEEEEeccC-CcEEE--EEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCC---CcEEEEee
Q 038439          104 VNSEYIACGSES-NEVYV--YHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQ---GTIKVLVL  177 (179)
Q Consensus       104 ~~~~~~~~~~~d-~~v~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~  177 (179)
                      |+++.++..+.+ +...+  .+...+...  ....            ........|+|||+.|+..+..   ..|+++++
T Consensus       180 pdg~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~------------~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~  245 (269)
T d2hqsa1         180 SDGKFMVMVSSNGGQQHIAKQDLATGGVQ--VLSS------------TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVST  245 (269)
T ss_dssp             TTSSEEEEEEECSSCEEEEEEETTTCCEE--ECCC------------SSSCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred             cccceeEEEeecCCceeeeEeecccccce--Eeec------------CccccceEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence            999887765543 33344  444433322  1111            3345667899999998765542   35777776


Q ss_pred             c
Q 038439          178 A  178 (179)
Q Consensus       178 ~  178 (179)
                      .
T Consensus       246 d  246 (269)
T d2hqsa1         246 D  246 (269)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.13  E-value=1.6e-10  Score=79.34  Aligned_cols=60  Identities=3%  Similarity=-0.017  Sum_probs=48.6

Q ss_pred             cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCE--EEEeccCCcEEEEEcCCCccccccccC
Q 038439           75 TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEY--IACGSESNEVYVYHKEISKPVTWHRFS  135 (179)
Q Consensus        75 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~d~~v~vwd~~~~~~~~~~~~~  135 (179)
                      .|.+||..+++.+..+.. ...+..++|+|||+.  ++++..++.|++||..+++.+..+...
T Consensus       295 ~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g  356 (368)
T d1mdah_         295 NTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             EEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             eEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECC
Confidence            588999999988877653 456788999999973  466777899999999999998877653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.99  E-value=3.1e-07  Score=60.48  Aligned_cols=160  Identities=10%  Similarity=0.084  Sum_probs=103.2

Q ss_pred             cEEEEEcCCceeEEeec--CCCceeEEEEcCCCCeEEEEe---------CCCcee----eecccCceeEEEEeeC-CeEE
Q 038439            5 KVKVWCTRQEASVLNID--MKANICCVKYNPGSSNYIAKY---------QSTAPC----VHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         5 ~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~---------~~~~~~----~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      .|..++. .++....+.  .......+++.+++..+++..         ..++.+    ...+......+++.++ +.++
T Consensus        94 ~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v  172 (279)
T d1q7fa_          94 QIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFI  172 (279)
T ss_dssp             EEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred             ccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeEEe
Confidence            4444443 344444443  345578899999885444433         222322    2234456677888888 7777


Q ss_pred             EecCCCcEEEEecCCCcceeeec--CCCCCeEEEEEeeCCCEEEEecc-CCcEEEEEcCCCccccccccCCCCCCCCccc
Q 038439           69 SASTDSTLRLWDVKENLPVRTFR--GHMNEKNFVGLTVNSEYIACGSE-SNEVYVYHKEISKPVTWHRFSSPDMDDTDED  145 (179)
Q Consensus        69 ~~~~d~~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~-d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  145 (179)
                      +....+.|.+||.. ++.+.++.  +.......+++.++|+.+++-.. ++.|.+|+. +++.+..+.....        
T Consensus       173 ~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~--------  242 (279)
T d1q7fa_         173 SDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVK--------  242 (279)
T ss_dssp             EEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSC--------
T ss_pred             eeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCC--------
Confidence            77888899999965 56666663  23445788999999997776543 456899985 4665544432211        


Q ss_pred             CCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          146 AGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       146 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                        ....+.+++.|+|+++ +++.++.|++|...
T Consensus       243 --~~~p~~vav~~dG~l~-V~~~n~~v~~fr~~  272 (279)
T d1q7fa_         243 --HAQCFDVALMDDGSVV-LASKDYRLYIYRYV  272 (279)
T ss_dssp             --CSCEEEEEEETTTEEE-EEETTTEEEEEECS
T ss_pred             --CCCEeEEEEeCCCcEE-EEeCCCeEEEEEee
Confidence              3357889999999754 55678999999754

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.96  E-value=7e-08  Score=66.13  Aligned_cols=148  Identities=11%  Similarity=0.111  Sum_probs=89.9

Q ss_pred             CceeEEEEcCCCCeEEEEe------------CCCcee------eecccCceeEEEEeeC-CeE-EEecCCCcEEEEecCC
Q 038439           24 ANICCVKYNPGSSNYIAKY------------QSTAPC------VHGHKKAVSYVKFLSN-DEL-ASASTDSTLRLWDVKE   83 (179)
Q Consensus        24 ~~v~~~~~~~~~~~~~~~~------------~~~~~~------~~~~~~~i~~~~~~~~-~~l-~~~~~d~~v~iwd~~~   83 (179)
                      ..+.++.|+|+|+.++++.            ..+...      ..........+.|+|+ +++ ++.-.++.|.+|++..
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence            3478999999998787776            111111      1112345678999999 655 4555688999999876


Q ss_pred             Ccceee-----ec--------------CCCCCeEEEEEeeCCCEEEEecc------CCcEEEEEcCCCccccccc-cCCC
Q 038439           84 NLPVRT-----FR--------------GHMNEKNFVGLTVNSEYIACGSE------SNEVYVYHKEISKPVTWHR-FSSP  137 (179)
Q Consensus        84 ~~~~~~-----~~--------------~~~~~v~~~~~~~~~~~~~~~~~------d~~v~vwd~~~~~~~~~~~-~~~~  137 (179)
                      .+....     ..              ........+.++|+|++++++..      ...|..|++.....+.... ....
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~  304 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT  304 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence            542211     10              01123457889999999887643      2337777776533222111 0000


Q ss_pred             CCCCCcccCCcceEEEEEEcc-CCCeEEEEe-CCCcEEEEeec
Q 038439          138 DMDDTDEDAGSYFISAVCWKS-DSPTMLTAN-SQGTIKVLVLA  178 (179)
Q Consensus       138 ~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-~dg~i~iwd~~  178 (179)
                             .........++++| +|++|+++. .++.|.+|+++
T Consensus       305 -------~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         305 -------PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             -------SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             -------EcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence                   00033456788998 789877664 57899999864

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.92  E-value=3.7e-07  Score=59.48  Aligned_cols=142  Identities=8%  Similarity=-0.034  Sum_probs=92.9

Q ss_pred             CCceeEEEEcCCCCeEEEEe-CC---------Ccee---eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCccee
Q 038439           23 KANICCVKYNPGSSNYIAKY-QS---------TAPC---VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVR   88 (179)
Q Consensus        23 ~~~v~~~~~~~~~~~~~~~~-~~---------~~~~---~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~   88 (179)
                      ...+..+++.+++. ++++. ..         +...   ..........+++.++ +.+++...++.|..+|........
T Consensus        97 ~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~  175 (260)
T d1rwia_          97 LNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV  175 (260)
T ss_dssp             CCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEE
T ss_pred             eeecccccccccce-eEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceeee
Confidence            35678999999984 55543 11         1111   1111234568888888 777777888889999977543332


Q ss_pred             eecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC
Q 038439           89 TFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS  168 (179)
Q Consensus        89 ~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  168 (179)
                      ...........+++.++|.++++....+.|..++...... ...... .          -.....++++++|+++++-..
T Consensus       176 ~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~-~----------~~~P~~i~~d~~g~l~vad~~  243 (260)
T d1rwia_         176 LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLPFT-G----------LNTPLAVAVDSDRTVYVADRG  243 (260)
T ss_dssp             CCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECCCC-S----------CCCEEEEEECTTCCEEEEEGG
T ss_pred             eeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEccC-C----------CCCeEEEEEeCCCCEEEEECC
Confidence            2223445678899999999888888888888887654432 111110 0          235688999999988777677


Q ss_pred             CCcEEEEee
Q 038439          169 QGTIKVLVL  177 (179)
Q Consensus       169 dg~i~iwd~  177 (179)
                      +++|+.++.
T Consensus       244 ~~rI~~i~~  252 (260)
T d1rwia_         244 NDRVVKLTS  252 (260)
T ss_dssp             GTEEEEECC
T ss_pred             CCEEEEEeC
Confidence            777776653

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=6.1e-07  Score=58.31  Aligned_cols=88  Identities=8%  Similarity=-0.010  Sum_probs=54.7

Q ss_pred             eeEEEEeeC-CeEEEecC-CCc--EEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc---CCcEEEEEcCCCcc
Q 038439           56 VSYVKFLSN-DELASAST-DST--LRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE---SNEVYVYHKEISKP  128 (179)
Q Consensus        56 i~~~~~~~~-~~l~~~~~-d~~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---d~~v~vwd~~~~~~  128 (179)
                      .....|+|+ ..++..+. .+.  +.+.+...+.  ..+...........|+|||+.|+..+.   ...++++++..+..
T Consensus       173 ~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~  250 (269)
T d2hqsa1         173 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK  250 (269)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC--EEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred             ccccccccccceeEEEeecCCceeeeEeeccccc--ceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence            445678888 65555443 344  4444544443  233334556678899999999875443   34688999987665


Q ss_pred             ccccccCCCCCCCCcccCCcceEEEEEEcc
Q 038439          129 VTWHRFSSPDMDDTDEDAGSYFISAVCWKS  158 (179)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  158 (179)
                      ......             ...+...+|+|
T Consensus       251 ~~lt~~-------------~g~~~~p~WSP  267 (269)
T d2hqsa1         251 ARLPAT-------------DGQVKFPAWSP  267 (269)
T ss_dssp             EECCCS-------------SSEEEEEEECC
T ss_pred             EEEeCC-------------CCcEEeEEeCC
Confidence            432221             45677889998

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.82  E-value=2.4e-06  Score=57.17  Aligned_cols=110  Identities=13%  Similarity=0.172  Sum_probs=73.4

Q ss_pred             eEEEEeeC-C-----eEEEecCCCcEEEEecCCCccee------eecC-CCCCeEEEEEeeCCCEEEEeccCCcEEEEEc
Q 038439           57 SYVKFLSN-D-----ELASASTDSTLRLWDVKENLPVR------TFRG-HMNEKNFVGLTVNSEYIACGSESNEVYVYHK  123 (179)
Q Consensus        57 ~~~~~~~~-~-----~l~~~~~d~~v~iwd~~~~~~~~------~~~~-~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~  123 (179)
                      +.++|+|+ .     ++++-+..+.|..||+.....+.      .+.. .......+++..+|+++++....+.|.+||.
T Consensus       175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp  254 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence            35677776 3     34455667778888765432221      1111 1223557899999998888777899999999


Q ss_pred             CCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeE-EEEeCCCcEEEEeec
Q 038439          124 EISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTM-LTANSQGTIKVLVLA  178 (179)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~  178 (179)
                      +.++....+...            ...+++++|.|+++.| ++.+.+|.|..+++.
T Consensus       255 ~~g~~~~~i~~p------------~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         255 DGGQPKMRIRCP------------FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             TCBSCSEEEECS------------SSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCCEEEEEEECC------------CCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            887766554432            3467899999999755 555667888887753

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.78  E-value=2.1e-06  Score=55.84  Aligned_cols=163  Identities=8%  Similarity=0.001  Sum_probs=100.3

Q ss_pred             CCccEEEEEcCCceeEEee------------cCCCceeEEEEcCCCCeEEEEeCCCcee------------eecccCcee
Q 038439            2 AYGKVKVWCTRQEASVLNI------------DMKANICCVKYNPGSSNYIAKYQSTAPC------------VHGHKKAVS   57 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~   57 (179)
                      .||.+.|-+......+..+            ........+++.+++ .++++......+            .........
T Consensus        23 ~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g-~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~  101 (260)
T d1rwia_          23 SAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAG-TVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPE  101 (260)
T ss_dssp             TTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTC-CEEEEETTTEEEEECTTCSCCEECCCCSCCSEE
T ss_pred             CCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCC-CEEEeeeeeceeeeeeeccceeeeeeeeeeecc
Confidence            4677777665443222222            112346789999998 455555211111            111224467


Q ss_pred             EEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCC
Q 038439           58 YVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSS  136 (179)
Q Consensus        58 ~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~  136 (179)
                      .+++.++ +.+++-.....+..++...................++++++++.+++...++.|..+|......... ....
T Consensus       102 ~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~-~~~~  180 (260)
T d1rwia_         102 GLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL-PFTD  180 (260)
T ss_dssp             EEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC-CCSS
T ss_pred             cccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceeeee-eccc
Confidence            8888888 6666655666677777654332222122234567899999999888888888999999876543321 1110


Q ss_pred             CCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       137 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                                 ......+++.++|+++++....+.|..++.
T Consensus       181 -----------~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~  210 (260)
T d1rwia_         181 -----------ITAPWGIAVDEAGTVYVTEHNTNQVVKLLA  210 (260)
T ss_dssp             -----------CCSEEEEEECTTCCEEEEETTTTEEEEECT
T ss_pred             -----------cCCCccceeeeeeeeeeeecCCCEEEEEeC
Confidence                       335688999999988877777888887764

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.78  E-value=4.6e-06  Score=56.93  Aligned_cols=122  Identities=16%  Similarity=0.174  Sum_probs=73.4

Q ss_pred             eeEEEEeeC-CeEEEec-CCCcEEEEecCCCccee---eec--CCCCCeEEEEEeeCCCEEEEe-ccCCcEEEEEcCCCc
Q 038439           56 VSYVKFLSN-DELASAS-TDSTLRLWDVKENLPVR---TFR--GHMNEKNFVGLTVNSEYIACG-SESNEVYVYHKEISK  127 (179)
Q Consensus        56 i~~~~~~~~-~~l~~~~-~d~~v~iwd~~~~~~~~---~~~--~~~~~v~~~~~~~~~~~~~~~-~~d~~v~vwd~~~~~  127 (179)
                      +.++.|+|+ +++++++ ....|.+|+......+.   ...  ......+.+.|+|+++++++. ..++.|.+|++...+
T Consensus       147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~  226 (365)
T d1jofa_         147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT  226 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             ceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCC
Confidence            468899999 7666664 35578888765432221   111  234568899999999987554 458899999987654


Q ss_pred             cccccc-----cCCCC--CCCCcccCCcceEEEEEEccCCCeEEEEeC------CCcEEEEee
Q 038439          128 PVTWHR-----FSSPD--MDDTDEDAGSYFISAVCWKSDSPTMLTANS------QGTIKVLVL  177 (179)
Q Consensus       128 ~~~~~~-----~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~iwd~  177 (179)
                      ......     .....  ........+......+.++|+|++|+++..      .+.|..|++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~  289 (365)
T d1jofa_         227 HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL  289 (365)
T ss_dssp             CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred             ceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEe
Confidence            322111     11100  000001111345678899999999988753      123666654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1e-06  Score=62.23  Aligned_cols=120  Identities=10%  Similarity=0.125  Sum_probs=74.2

Q ss_pred             CCccEEEEEcCCceeEEeec----CCCceeEEEEcCCCCeEEEEeC-------------------CCc--ee--eecccC
Q 038439            2 AYGKVKVWCTRQEASVLNID----MKANICCVKYNPGSSNYIAKYQ-------------------STA--PC--VHGHKK   54 (179)
Q Consensus         2 ~d~~i~vwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~-------------------~~~--~~--~~~~~~   54 (179)
                      .||.|.+||+.+++....+.    ....+....||||++.++...+                   ++.  ++  ......
T Consensus        35 ~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~  114 (465)
T d1xfda1          35 QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNA  114 (465)
T ss_dssp             SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSC
T ss_pred             CCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCcc
Confidence            57899999998877544443    2236788899999977666541                   111  11  112233


Q ss_pred             ceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecC-CCC-----------------CeEEEEEeeCCCEEEEecc-
Q 038439           55 AVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRG-HMN-----------------EKNFVGLTVNSEYIACGSE-  114 (179)
Q Consensus        55 ~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~-----------------~v~~~~~~~~~~~~~~~~~-  114 (179)
                      .+....|+|+ ..++... ++.|.+.+...+..++.... ...                 .-..+.|||||++||.... 
T Consensus       115 ~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D  193 (465)
T d1xfda1         115 KLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN  193 (465)
T ss_dssp             CCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred             ccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEec
Confidence            4556789999 7776655 56788888776655443322 111                 1246779999999987643 


Q ss_pred             CCcEEEEE
Q 038439          115 SNEVYVYH  122 (179)
Q Consensus       115 d~~v~vwd  122 (179)
                      +..|..+.
T Consensus       194 ~s~V~~~~  201 (465)
T d1xfda1         194 DSRVPIME  201 (465)
T ss_dssp             CTTSCEEE
T ss_pred             ccccceee
Confidence            33344443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.65  E-value=1.1e-05  Score=53.38  Aligned_cols=162  Identities=9%  Similarity=0.045  Sum_probs=98.4

Q ss_pred             CceeEEeecCCCceeEEEEcCCCCeEEEEe-C---------CCcee-eecccCceeEEEEeeC-CeEEEecCCCcEEEEe
Q 038439           13 QEASVLNIDMKANICCVKYNPGSSNYIAKY-Q---------STAPC-VHGHKKAVSYVKFLSN-DELASASTDSTLRLWD   80 (179)
Q Consensus        13 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~---------~~~~~-~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd   80 (179)
                      ..+.+..+.....+..++++|+|. ++++. .         .++.. +......+.+++|.++ +++++...++.+..++
T Consensus        17 ~~~v~~~~p~~~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~   95 (302)
T d2p4oa1          17 PAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVS   95 (302)
T ss_dssp             CEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             cccEEEECCCCCCcCCEEECCCCC-EEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEE
Confidence            345556666666799999999995 66655 1         12222 4445667889999999 8888887888888887


Q ss_pred             cCCCcc-eeeec--CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEc
Q 038439           81 VKENLP-VRTFR--GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWK  157 (179)
Q Consensus        81 ~~~~~~-~~~~~--~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  157 (179)
                      ...... ...+.  ........+.+.++++++++.+.++.+..+|...+............. ... .........+.+.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~ngi~~~  173 (302)
T d2p4oa1          96 LVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR-SNS-ESVFPAANGLKRF  173 (302)
T ss_dssp             EECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSC-SST-TCCSCSEEEEEEE
T ss_pred             ecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccce-eec-cCccccccccccc
Confidence            654322 12221  234557889999999998888888888888887654321111000000 000 0002345566665


Q ss_pred             cCCCeEEEEeCCCcEEEEeec
Q 038439          158 SDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       158 ~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      . +..+++.+..+.|..+++.
T Consensus       174 ~-~~l~~~~~~~~~i~~~~~~  193 (302)
T d2p4oa1         174 G-NFLYVSNTEKMLLLRIPVD  193 (302)
T ss_dssp             T-TEEEEEETTTTEEEEEEBC
T ss_pred             C-CceeeecCCCCeEEecccc
Confidence            3 3344555667777777653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.60  E-value=8.9e-07  Score=58.88  Aligned_cols=113  Identities=11%  Similarity=0.087  Sum_probs=82.1

Q ss_pred             ceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccc
Q 038439           55 AVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHR  133 (179)
Q Consensus        55 ~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~  133 (179)
                      .+..+++.|+ +++++...++.|..+|... + ...+......+..++|.++|+++++...++.+..++...........
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            4778999999 8888888899998888553 3 33344456678999999999998888888888888876543322111


Q ss_pred             cCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439          134 FSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA  178 (179)
Q Consensus       134 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  178 (179)
                      ....         .....+.+.+.++++++++-+.++.+..+|..
T Consensus       107 ~~~~---------~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~  142 (302)
T d2p4oa1         107 LTLP---------DAIFLNGITPLSDTQYLTADSYRGAIWLIDVV  142 (302)
T ss_dssp             EECT---------TCSCEEEEEESSSSEEEEEETTTTEEEEEETT
T ss_pred             cccC---------CccccceeEEccCCCEEeeccccccceeeecc
Confidence            1111         04467889999999988888878877777643

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.56  E-value=1.7e-05  Score=51.42  Aligned_cols=40  Identities=5%  Similarity=0.001  Sum_probs=32.2

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY   42 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~   42 (179)
                      +|.|.+.|+.+++..+.....+.+...+|||||+.++.+.
T Consensus        20 ~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~   59 (281)
T d1k32a2          20 CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRV   59 (281)
T ss_dssp             TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEE
T ss_pred             CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEE
Confidence            4667788999888776666778899999999998777664

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.33  E-value=0.00011  Score=49.03  Aligned_cols=150  Identities=13%  Similarity=0.071  Sum_probs=83.5

Q ss_pred             CCCceeEEEEcCCCCeEEEEe---C-CCcee-----------eecc---cCceeEEEEeeC-CeEEEecCC------CcE
Q 038439           22 MKANICCVKYNPGSSNYIAKY---Q-STAPC-----------VHGH---KKAVSYVKFLSN-DELASASTD------STL   76 (179)
Q Consensus        22 ~~~~v~~~~~~~~~~~~~~~~---~-~~~~~-----------~~~~---~~~i~~~~~~~~-~~l~~~~~d------~~v   76 (179)
                      .......++++++|..+++..   . ....+           ...+   ....+.+.+.++ +++++....      +.+
T Consensus        80 ~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v  159 (319)
T d2dg1a1          80 HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGV  159 (319)
T ss_dssp             SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEE
T ss_pred             CCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCccee
Confidence            445678999999995444331   0 11111           1111   223567788888 555543221      224


Q ss_pred             EEEecCCCcceeeecCCCCCeEEEEEeeCCCEE-EEeccCCcEEEEEcCCCccc-cccccCCCCCCCCcccCCcceEEEE
Q 038439           77 RLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI-ACGSESNEVYVYHKEISKPV-TWHRFSSPDMDDTDEDAGSYFISAV  154 (179)
Q Consensus        77 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~d~~v~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~  154 (179)
                      ..++.. ++.+..+...-...+.++|+|+++.| ++-+..+.|..||+...... ........     ...........+
T Consensus       160 ~~~~~d-g~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~-----~~~~~~~~PdGl  233 (319)
T d2dg1a1         160 YYVSPD-FRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIP-----YYFTGHEGPDSC  233 (319)
T ss_dssp             EEECTT-SCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEE-----EECCSSSEEEEE
T ss_pred             EEEecc-cceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceee-----eccCCccceeee
Confidence            444433 23333333333446789999999865 45566789999998643211 11100000     000002346679


Q ss_pred             EEccCCCeEEEEeCCCcEEEEee
Q 038439          155 CWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       155 ~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      ++.++|++.++....+.|.+||.
T Consensus       234 ~vD~~G~l~Va~~~~g~V~~~~p  256 (319)
T d2dg1a1         234 CIDSDDNLYVAMYGQGRVLVFNK  256 (319)
T ss_dssp             EEBTTCCEEEEEETTTEEEEECT
T ss_pred             eEcCCCCEEEEEcCCCEEEEECC
Confidence            99999998888888899998873

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.29  E-value=0.00013  Score=48.11  Aligned_cols=151  Identities=7%  Similarity=0.001  Sum_probs=96.2

Q ss_pred             cEEEEEcCCceeEEeec--C---CCceeEEEEcCCCCeEEEEe--------------CCCcee-eecccCceeEEEEeeC
Q 038439            5 KVKVWCTRQEASVLNID--M---KANICCVKYNPGSSNYIAKY--------------QSTAPC-VHGHKKAVSYVKFLSN   64 (179)
Q Consensus         5 ~i~vwd~~~~~~~~~~~--~---~~~v~~~~~~~~~~~~~~~~--------------~~~~~~-~~~~~~~i~~~~~~~~   64 (179)
                      -|.++|..+++......  .   ...++.+.+.|+|..++...              ..++.. +...-..-+.+.|+++
T Consensus        79 gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d  158 (295)
T d2ghsa1          79 GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPD  158 (295)
T ss_dssp             EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTT
T ss_pred             ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCC
Confidence            47778888776544332  1   23588999999995544443              111111 1112223467889998


Q ss_pred             -C-eEEEecCCCcEEEEecCCC------cc--eeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccccc
Q 038439           65 -D-ELASASTDSTLRLWDVKEN------LP--VRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF  134 (179)
Q Consensus        65 -~-~l~~~~~d~~v~iwd~~~~------~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~  134 (179)
                       . .+++-+..+.|..+++...      +.  ...+.........+++..+|++.++.-..+.|..||. .++.+..+.+
T Consensus       159 ~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~l  237 (295)
T d2ghsa1         159 GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV  237 (295)
T ss_dssp             SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC
T ss_pred             CceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecC
Confidence             4 4566677888998887531      11  1122233455778899999998887777788999996 5777776665


Q ss_pred             CCCCCCCCcccCCcceEEEEEEc-cCCCeEEEEeC
Q 038439          135 SSPDMDDTDEDAGSYFISAVCWK-SDSPTMLTANS  168 (179)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~  168 (179)
                      .            ...+++++|- ++.+.|+..+.
T Consensus       238 P------------~~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         238 P------------GKQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             S------------CSBEEEEEEESTTSCEEEEEEB
T ss_pred             C------------CCceEEEEEeCCCCCEEEEEEC
Confidence            3            3468999996 67777765543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.22  E-value=0.00017  Score=46.96  Aligned_cols=112  Identities=12%  Similarity=0.088  Sum_probs=75.8

Q ss_pred             CceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeec--CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccc
Q 038439           54 KAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFR--GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVT  130 (179)
Q Consensus        54 ~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~  130 (179)
                      .....+++.++ ..+++....+.+.+++.. ++.+..+.  .+......+++.++++.+++....+.|++||.. ++.+.
T Consensus       114 ~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~  191 (279)
T d1q7fa_         114 QHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLR  191 (279)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEE
T ss_pred             cccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceeeeecC-Cceee
Confidence            44567777777 666666666778888754 55566553  344567788999999988888888999999975 44443


Q ss_pred             ccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEee
Q 038439          131 WHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVL  177 (179)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~  177 (179)
                      .+.....          ......+++.++|+.+++-.. ++.|.+|+.
T Consensus       192 ~~g~~g~----------~~~P~giavD~~G~i~Vad~~~~~~v~~f~~  229 (279)
T d1q7fa_         192 QIGGEGI----------TNYPIGVGINSNGEILIADNHNNFNLTIFTQ  229 (279)
T ss_dssp             EESCTTT----------SCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred             eeccccc----------ccCCcccccccCCeEEEEECCCCcEEEEECC
Confidence            3321111          335778999999997766543 446888763

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.10  E-value=0.00039  Score=46.21  Aligned_cols=137  Identities=7%  Similarity=0.095  Sum_probs=85.4

Q ss_pred             CceeEEEEcCCCCeEEEEe----------------CCCcee--eecccCceeEEEEeeC-Ce-EEEecCCCcEEEEecCC
Q 038439           24 ANICCVKYNPGSSNYIAKY----------------QSTAPC--VHGHKKAVSYVKFLSN-DE-LASASTDSTLRLWDVKE   83 (179)
Q Consensus        24 ~~v~~~~~~~~~~~~~~~~----------------~~~~~~--~~~~~~~i~~~~~~~~-~~-l~~~~~d~~v~iwd~~~   83 (179)
                      ..+..+++.|+|. ++++.                ..++.+  +...-..-+.++|+|+ +. +++-+..+.|..||+..
T Consensus       130 ~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~  208 (319)
T d2dg1a1         130 YCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED  208 (319)
T ss_dssp             CCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             cCCcceeEEeccc-eeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcC
Confidence            3477899999995 54443                011111  1112223466899999 54 46667788999999864


Q ss_pred             C-cceeee-------cCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEE
Q 038439           84 N-LPVRTF-------RGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVC  155 (179)
Q Consensus        84 ~-~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  155 (179)
                      . ......       .......-.+++.++|+++++....+.|.++|. .++.+..+.+....      ..+...+++++
T Consensus       209 ~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~------~~~~~~~~~~~  281 (319)
T d2dg1a1         209 DGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRD------EGHMLRSTHPQ  281 (319)
T ss_dssp             TSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGG------GTCSCBCCEEE
T ss_pred             CCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcC------CCcCceeeeEE
Confidence            2 211111       111223567999999998888888899999996 57776665543210      00133577899


Q ss_pred             EccCCCeEEEEeC
Q 038439          156 WKSDSPTMLTANS  168 (179)
Q Consensus       156 ~~~~~~~l~~~~~  168 (179)
                      |.++...+++.+.
T Consensus       282 ~~~~~~~~~~t~~  294 (319)
T d2dg1a1         282 FIPGTNQLIICSN  294 (319)
T ss_dssp             ECTTSCEEEEEEE
T ss_pred             EeCCCCEEEEEcC
Confidence            9998877766554

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=7e-06  Score=57.84  Aligned_cols=108  Identities=14%  Similarity=0.187  Sum_probs=70.8

Q ss_pred             EEEeeCCeEEEecCCCcEEEEecCCCcceeeecC---CCCCeEEEEEeeCCCEEEEec---------cCCcEEEEEcCCC
Q 038439           59 VKFLSNDELASASTDSTLRLWDVKENLPVRTFRG---HMNEKNFVGLTVNSEYIACGS---------ESNEVYVYHKEIS  126 (179)
Q Consensus        59 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~---------~d~~v~vwd~~~~  126 (179)
                      ..|.+++.++.-..++.+.+||+.+++....+..   ....+....|+||+++++...         ..+.+.++|+.++
T Consensus        22 ~~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          22 AKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             CCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             CEEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence            3577773334445678899999987765433332   223566788999999977653         3567899999988


Q ss_pred             ccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          127 KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      ...........          ...+....|||||+.||-.. ++.|.+.+.
T Consensus       102 ~~~~l~~~~~~----------~~~l~~~~wSPDG~~iafv~-~~nl~~~~~  141 (465)
T d1xfda1         102 DPQSLDPPEVS----------NAKLQYAGWGPKGQQLIFIF-ENNIYYCAH  141 (465)
T ss_dssp             CCEECCCTTCC----------SCCCSBCCBCSSTTCEEEEE-TTEEEEESS
T ss_pred             ceeeccCccCC----------ccccceeeeccCCceEEEEe-cceEEEEec
Confidence            75443222111          33455678999999998766 445666554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.95  E-value=0.00074  Score=44.34  Aligned_cols=161  Identities=4%  Similarity=-0.058  Sum_probs=94.7

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe---------CCCcee-eec-----ccCceeEEEEeeC-CeE
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY---------QSTAPC-VHG-----HKKAVSYVKFLSN-DEL   67 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------~~~~~~-~~~-----~~~~i~~~~~~~~-~~l   67 (179)
                      ++|.-||..+++. ..+.....+.++++.+++ .++++.         .+++.. +..     ....++.+.+.|+ ++.
T Consensus        40 ~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~dg-~l~va~~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw  117 (295)
T d2ghsa1          40 RELHELHLASGRK-TVHALPFMGSALAKISDS-KQLIASDDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALW  117 (295)
T ss_dssp             TEEEEEETTTTEE-EEEECSSCEEEEEEEETT-EEEEEETTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEE
T ss_pred             CEEEEEECCCCeE-EEEECCCCcEEEEEecCC-CEEEEEeCccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEE
Confidence            4555566555543 345566788999999998 455444         222222 111     1224677778788 554


Q ss_pred             EEecC----CCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEE-EEeccCCcEEEEEcCCCcccc------ccccCC
Q 038439           68 ASAST----DSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI-ACGSESNEVYVYHKEISKPVT------WHRFSS  136 (179)
Q Consensus        68 ~~~~~----d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~d~~v~vwd~~~~~~~~------~~~~~~  136 (179)
                      ++...    .+.-.+|.+..++...... .......+.|+++++.+ ++-+..+.|..+++.......      ......
T Consensus       118 ~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~  196 (295)
T d2ghsa1         118 IGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTG  196 (295)
T ss_dssp             EEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTT
T ss_pred             EEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCc
Confidence            44322    2344566666665433332 23345789999998865 455667888888875322111      011111


Q ss_pred             CCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439          137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL  177 (179)
Q Consensus       137 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  177 (179)
                      .          ......+++..+|++.++.-..+.|..||.
T Consensus       197 ~----------~g~pdG~~vD~~GnlWva~~~~g~V~~~dp  227 (295)
T d2ghsa1         197 I----------KGGMDGSVCDAEGHIWNARWGEGAVDRYDT  227 (295)
T ss_dssp             S----------SSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             c----------cccccceEEcCCCCEEeeeeCCCceEEecC
Confidence            1          445778889999987777767788888874

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.92  E-value=0.00075  Score=44.74  Aligned_cols=70  Identities=11%  Similarity=0.176  Sum_probs=53.4

Q ss_pred             eeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCE-EEEeccCCcEEEEEcCC
Q 038439           56 VSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEY-IACGSESNEVYVYHKEI  125 (179)
Q Consensus        56 i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~d~~v~vwd~~~  125 (179)
                      ...+++.++ +++++....+.|.+||...++.+..+........+++|.|+++. +++.+.++.|...++..
T Consensus       228 pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             ceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            345777777 66677667889999998887777777666667889999999874 56667778888888654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.88  E-value=7.1e-05  Score=48.32  Aligned_cols=100  Identities=15%  Similarity=0.206  Sum_probs=62.2

Q ss_pred             EeeC---CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc-C-----CcEEEEEcCCCccccc
Q 038439           61 FLSN---DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE-S-----NEVYVYHKEISKPVTW  131 (179)
Q Consensus        61 ~~~~---~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d-----~~v~vwd~~~~~~~~~  131 (179)
                      .+|+   ..++..+ ++.|.+.|+..++. +.+..+.......+|||||+.|+.... +     ..|.+++..+++....
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            4566   3444333 45688889988775 456666777888999999999875432 2     2477778777765443


Q ss_pred             cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC
Q 038439          132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS  168 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  168 (179)
                      .......      ...........|+|+|+.|+....
T Consensus        84 t~~~~~~------~~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          84 TYFSGKS------TGRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             CCCCEEE------ETTEECSEEEEECTTCCEEEEECT
T ss_pred             eecCCCc------cCccccccccccCCCCCEEEEEEc
Confidence            2211000      000233467889999998876543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.54  E-value=0.0051  Score=42.33  Aligned_cols=81  Identities=5%  Similarity=-0.033  Sum_probs=49.2

Q ss_pred             eEEEEEeeCCCEEEEec-cCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEE
Q 038439           97 KNFVGLTVNSEYIACGS-ESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVL  175 (179)
Q Consensus        97 v~~~~~~~~~~~~~~~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw  175 (179)
                      ...+.++|||+++++++ .+..+.|+|++.-+....-............+. .......+|...|+...+---|..|.-|
T Consensus       277 PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~el-glgPLht~fd~~g~aytslfids~v~kw  355 (459)
T d1fwxa2         277 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHTAFDGRGNAYTSLFLDSQVVKW  355 (459)
T ss_dssp             CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBC-CSCEEEEEECTTSEEEEEETTTTEEEEE
T ss_pred             CCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeeccc-CcCccccccCCCceEEEEeeccceEEEE
Confidence            45689999999976554 589999999975322210000000000000011 3456677898888766666679999999


Q ss_pred             eec
Q 038439          176 VLA  178 (179)
Q Consensus       176 d~~  178 (179)
                      ++.
T Consensus       356 ~~~  358 (459)
T d1fwxa2         356 NIE  358 (459)
T ss_dssp             EHH
T ss_pred             ecc
Confidence            873

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.28  E-value=0.0029  Score=45.44  Aligned_cols=62  Identities=15%  Similarity=0.120  Sum_probs=44.2

Q ss_pred             CcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCC
Q 038439           74 STLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSS  136 (179)
Q Consensus        74 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~  136 (179)
                      +.+.-||+.+++.+-+++... +...-...-.+.++++|+.|+.++.+|.++++.+-++.+..
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~  518 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT  518 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCC
Confidence            457778888887776664321 11112234467788889999999999999999998877643

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.01  Score=38.18  Aligned_cols=163  Identities=9%  Similarity=-0.064  Sum_probs=97.6

Q ss_pred             CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCCCcee-----------------eecccCceeEEEEeeC-
Q 038439            3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPC-----------------VHGHKKAVSYVKFLSN-   64 (179)
Q Consensus         3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~i~~~~~~~~-   64 (179)
                      ...|+-.++.+.+....+.....+.+++|.+..+.++.+-.....+                 +......+..+++.+. 
T Consensus         9 ~~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~   88 (266)
T d1ijqa1           9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (266)
T ss_dssp             BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CCeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc
Confidence            3457778887766555555666788999998876666553111111                 2222234567787765 


Q ss_pred             -CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEec--cCCcEEEEEcCCCccccccccCCCCCCC
Q 038439           65 -DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGS--ESNEVYVYHKEISKPVTWHRFSSPDMDD  141 (179)
Q Consensus        65 -~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~  141 (179)
                       ....+-...+.|.+.++........+.........+++.|...+++...  ..+.|.-.++............      
T Consensus        89 ~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~------  162 (266)
T d1ijqa1          89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN------  162 (266)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS------
T ss_pred             ceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccc------
Confidence             4455556677899999886654444555556678999999665655443  3345666666544332222110      


Q ss_pred             CcccCCcceEEEEEEccCCCeEEEE-eCCCcEEEEee
Q 038439          142 TDEDAGSYFISAVCWKSDSPTMLTA-NSQGTIKVLVL  177 (179)
Q Consensus       142 ~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~  177 (179)
                            -..+..+++.+.++.|+.+ ...+.|...++
T Consensus       163 ------~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~  193 (266)
T d1ijqa1         163 ------IQWPNGITLDLLSGRLYWVDSKLHSISSIDV  193 (266)
T ss_dssp             ------CSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ------cceeeEEEeeccccEEEEecCCcCEEEEEEC
Confidence                  2346778888776666555 34566666554

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.88  E-value=0.027  Score=40.43  Aligned_cols=62  Identities=15%  Similarity=0.095  Sum_probs=45.8

Q ss_pred             CcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCC
Q 038439           74 STLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSS  136 (179)
Q Consensus        74 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~  136 (179)
                      |.+.-+|+.+++.+-+...+. ++..-.++..+..+++|+.||.++.+|.++|+.+-.+.+..
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~  527 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS  527 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCC
Confidence            567888888888776665332 22222244567788889999999999999999998877643

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.81  E-value=0.028  Score=36.75  Aligned_cols=67  Identities=10%  Similarity=0.089  Sum_probs=47.9

Q ss_pred             CeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEE
Q 038439           96 EKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV  174 (179)
Q Consensus        96 ~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  174 (179)
                      ..-++..++.-..++.-+.-|.+++||++++.++...+..            ...|...+-..+..=+++...+|.|.-
T Consensus       257 FPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs------------~~~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         257 FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS------------GETIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             CEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC------------SSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             cEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecC------------CCceEEeccCCCCceEEEECCCCeEEE
Confidence            3456788888778888899999999999999998776664            334554444444445666667776654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.80  E-value=0.018  Score=41.27  Aligned_cols=62  Identities=10%  Similarity=-0.000  Sum_probs=43.8

Q ss_pred             CcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCC
Q 038439           74 STLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSS  136 (179)
Q Consensus        74 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~  136 (179)
                      |.+.-+|+.+++.+-+..... ...+-.+.-.+.++++|+.|+.++.+|.++++.+-++.+..
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~-~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~  505 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS  505 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             ccEEEeccCCCceeeEcCCCC-CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCC
Confidence            568888888888776554221 11111223356678889999999999999999998877653

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.77  E-value=0.048  Score=38.89  Aligned_cols=62  Identities=13%  Similarity=0.125  Sum_probs=44.5

Q ss_pred             CcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCC
Q 038439           74 STLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSS  136 (179)
Q Consensus        74 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~  136 (179)
                      +.+.-+|+.+++.+-++... .....-.+.-.+.+++.|+.||.++.+|.++++.+-.+.+..
T Consensus       438 G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~  499 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQS  499 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             cceEEEeCCCCeEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCC
Confidence            56778899888877665422 112222234457788889999999999999999998877643

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.70  E-value=0.056  Score=38.66  Aligned_cols=23  Identities=9%  Similarity=0.036  Sum_probs=18.7

Q ss_pred             eEEEecCCCcEEEEecCCCccee
Q 038439           66 ELASASTDSTLRLWDVKENLPVR   88 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~~~~~   88 (179)
                      .++.++.+|.+.++|..+++++.
T Consensus       318 ~v~~~~k~G~l~vlDr~tG~~i~  340 (571)
T d2ad6a1         318 LLSHIDRNGILYTLNRENGNLIV  340 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEE
T ss_pred             ceeeccccceEEEEecCCCcEee
Confidence            46778889999999999887663

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.47  E-value=0.039  Score=36.84  Aligned_cols=92  Identities=11%  Similarity=0.044  Sum_probs=57.0

Q ss_pred             EEEEecCCCccee--eec-CCCCCeEEEEEeeCCCEEEEeccC-CcEEEEEcCCCccccccccCCCCCCCCcccCCcceE
Q 038439           76 LRLWDVKENLPVR--TFR-GHMNEKNFVGLTVNSEYIACGSES-NEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFI  151 (179)
Q Consensus        76 v~iwd~~~~~~~~--~~~-~~~~~v~~~~~~~~~~~~~~~~~d-~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  151 (179)
                      +.+||..+++-..  ... .+........+.+++++++.|+.+ ..+.+||..+..-...-....           ...-
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~-----------~r~~  122 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV-----------ARGY  122 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS-----------CCSS
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccc-----------cccc
Confidence            6689988764322  121 222333456788999999888765 579999998865432221111           1112


Q ss_pred             EEEEEccCCCeEEEEeCC------CcEEEEeec
Q 038439          152 SAVCWKSDSPTMLTANSQ------GTIKVLVLA  178 (179)
Q Consensus       152 ~~~~~~~~~~~l~~~~~d------g~i~iwd~~  178 (179)
                      ...+..+||+.++.|+.+      ..+.+||+.
T Consensus       123 ~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~  155 (387)
T d1k3ia3         123 QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  155 (387)
T ss_dssp             CEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             cceeeecCCceeeeccccccccccceeeeecCC
Confidence            345667799988888753      358888865

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.33  E-value=0.083  Score=36.31  Aligned_cols=121  Identities=8%  Similarity=-0.029  Sum_probs=78.7

Q ss_pred             ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-C--------------------------------------C
Q 038439            4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-Q--------------------------------------S   44 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~--------------------------------------~   44 (179)
                      +.+.+.|..+++....+........++++|+|..+++++ +                                      .
T Consensus       173 ~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein  252 (459)
T d1fwxa2         173 NVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  252 (459)
T ss_dssp             EEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             eEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence            346778999988888887777888999999998888876 0                                      0


Q ss_pred             Cceeeecc-------------cCceeEEEEeeC-CeEE-EecCCCcEEEEecCCCcc------------eeeecCCCCCe
Q 038439           45 TAPCVHGH-------------KKAVSYVKFLSN-DELA-SASTDSTLRLWDVKENLP------------VRTFRGHMNEK   97 (179)
Q Consensus        45 ~~~~~~~~-------------~~~i~~~~~~~~-~~l~-~~~~d~~v~iwd~~~~~~------------~~~~~~~~~~v   97 (179)
                      +-.++...             .+....+..+|| .+++ ++..+.++.++|+++-..            ..+.. .....
T Consensus       253 gV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e-lglgP  331 (459)
T d1fwxa2         253 GVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGP  331 (459)
T ss_dssp             TEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB-CCSCE
T ss_pred             CceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc-cCcCc
Confidence            00111110             112345788899 5554 455689999999974211            11111 12234


Q ss_pred             EEEEEeeCCCEEEEeccCCcEEEEEcCC
Q 038439           98 NFVGLTVNSEYIACGSESNEVYVYHKEI  125 (179)
Q Consensus        98 ~~~~~~~~~~~~~~~~~d~~v~vwd~~~  125 (179)
                      ...+|..+|.-..+.--|.+|.-|++..
T Consensus       332 Lht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         332 LHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             cccccCCCceEEEEeeccceEEEEecch
Confidence            4567888886666667899999999853

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.00  E-value=0.04  Score=39.43  Aligned_cols=25  Identities=8%  Similarity=0.068  Sum_probs=20.1

Q ss_pred             CeEEEecCCCcEEEEecCCCcceee
Q 038439           65 DELASASTDSTLRLWDVKENLPVRT   89 (179)
Q Consensus        65 ~~l~~~~~d~~v~iwd~~~~~~~~~   89 (179)
                      ..++.++.+|.+.++|..+++.+..
T Consensus       328 ~~v~~~~k~G~l~~lDr~tGe~~~~  352 (573)
T d1kb0a2         328 KVILHAPKNGFFFVLDRTNGKFISA  352 (573)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             eeeeeccccceeEEecccccccccc
Confidence            3577788899999999999876644

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.80  E-value=0.033  Score=39.74  Aligned_cols=51  Identities=4%  Similarity=-0.003  Sum_probs=31.7

Q ss_pred             CcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          116 NEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       116 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      |.+.-+|+.+++.+-......+.         ...    ...-.+.+++.|+.||.++.+|.++
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~---------~gg----~l~TagglVF~G~~dg~l~A~Da~t  488 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHW---------NGG----TLSTAGNLVFQGTAAGQMHAYSADK  488 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSC---------CCC----EEEETTTEEEEECTTSEEEEEETTT
T ss_pred             cceEEEeCCCCeEeeeccCCCCC---------CCc----eeEECCCEEEEECCCCcEEEEECCC
Confidence            45666777777766555443221         111    1223467788899999999999764

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.75  E-value=0.097  Score=35.84  Aligned_cols=103  Identities=12%  Similarity=0.085  Sum_probs=60.3

Q ss_pred             ceeEEEEeeC-CeEEE-ecCC----CcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccC-------------
Q 038439           55 AVSYVKFLSN-DELAS-ASTD----STLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSES-------------  115 (179)
Q Consensus        55 ~i~~~~~~~~-~~l~~-~~~d----~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d-------------  115 (179)
                      .+..+.++|+ ++++. -+..    ..++++|+.+++.+...-. ......+.|.+|++.|+....+             
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~  204 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence            3455678888 65553 2323    3799999999986542211 1112468899999877643221             


Q ss_pred             ---CcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEE
Q 038439          116 ---NEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTA  166 (179)
Q Consensus       116 ---~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  166 (179)
                         ..|..+.+.+.......-.....        ....+..+..++++++++..
T Consensus       205 ~~~~~v~~h~lgt~~~~d~~v~~e~d--------~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         205 NLHQKLYYHVLGTDQSEDILCAEFPD--------EPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTT--------CTTCEEEEEECTTSCEEEEE
T ss_pred             CCcceEEEEECCCCcccccccccccc--------CCceEEeeeccCCcceeeEE
Confidence               25777777765443222222110        03356677788999987653

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.25  E-value=0.18  Score=32.03  Aligned_cols=159  Identities=4%  Similarity=-0.135  Sum_probs=85.1

Q ss_pred             ccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeC----------CCc---eeeecccCceeEEEEeeC-CeEE
Q 038439            4 GKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQ----------STA---PCVHGHKKAVSYVKFLSN-DELA   68 (179)
Q Consensus         4 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~----------~~~---~~~~~~~~~i~~~~~~~~-~~l~   68 (179)
                      +.|+..++........+. .-..+.++++..-+..++.+..          .++   .++.........+++.|. ++++
T Consensus        58 ~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly  137 (263)
T d1npea_          58 PSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLY  137 (263)
T ss_dssp             TEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEE
T ss_pred             CeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEE
Confidence            344444444333322222 2246788888766656665541          111   113333356788999988 6665


Q ss_pred             EecC-CCc--EEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEe-ccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439           69 SAST-DST--LRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACG-SESNEVYVYHKEISKPVTWHRFSSPDMDDTDE  144 (179)
Q Consensus        69 ~~~~-d~~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~  144 (179)
                      .... .+.  |..-++............-.....+++.+.++.|+.+ ...+.|...|+...........          
T Consensus       138 ~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~----------  207 (263)
T d1npea_         138 WTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG----------  207 (263)
T ss_dssp             EEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC----------
T ss_pred             EeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECC----------
Confidence            4432 223  4334554433333333334566789999887776555 5578899899876544322221          


Q ss_pred             cCCcceEEEEEEccCCCeEEEEe-CCCcEEEEee
Q 038439          145 DAGSYFISAVCWKSDSPTMLTAN-SQGTIKVLVL  177 (179)
Q Consensus       145 ~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~  177 (179)
                         ......+++.  +..|+... ..+.|...|.
T Consensus       208 ---~~~P~~lav~--~~~lYwtd~~~~~I~~~~~  236 (263)
T d1npea_         208 ---LQYPFAVTSY--GKNLYYTDWKTNSVIAMDL  236 (263)
T ss_dssp             ---CCSEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred             ---CCCcEEEEEE--CCEEEEEECCCCEEEEEEC
Confidence               1123466664  44454443 4566666654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.22  E-value=0.16  Score=36.47  Aligned_cols=23  Identities=13%  Similarity=0.115  Sum_probs=18.8

Q ss_pred             eEEEecCCCcEEEEecCCCccee
Q 038439           66 ELASASTDSTLRLWDVKENLPVR   88 (179)
Q Consensus        66 ~l~~~~~d~~v~iwd~~~~~~~~   88 (179)
                      .++....++.+.++|..+++++.
T Consensus       325 ~v~~~~k~G~~~vlDr~tG~~i~  347 (596)
T d1w6sa_         325 LLTHPDRNGIVYTLDRTDGALVS  347 (596)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEE
T ss_pred             ceeccccccceeeecCCCCceee
Confidence            56778888999999999887664

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.02  E-value=0.39  Score=30.40  Aligned_cols=142  Identities=5%  Similarity=-0.076  Sum_probs=81.2

Q ss_pred             CceeEEEEcCCCCeEEEEeCC-----------Cc-ee-eecccCceeEEEEeeC-CeE-EEecCCCcEEEEecCCCccee
Q 038439           24 ANICCVKYNPGSSNYIAKYQS-----------TA-PC-VHGHKKAVSYVKFLSN-DEL-ASASTDSTLRLWDVKENLPVR   88 (179)
Q Consensus        24 ~~v~~~~~~~~~~~~~~~~~~-----------~~-~~-~~~~~~~i~~~~~~~~-~~l-~~~~~d~~v~iwd~~~~~~~~   88 (179)
                      ..+..++|.+..+.++.+-..           .. .. +.........+++..- +.| .+-...+.|.+.++.......
T Consensus        36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~  115 (263)
T d1npea_          36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (263)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEE
Confidence            346778888877666655311           11 11 3223345678888755 444 455667799999987654433


Q ss_pred             eecCCCCCeEEEEEeeCCCEEEEecc-CCc--EEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEE
Q 038439           89 TFRGHMNEKNFVGLTVNSEYIACGSE-SNE--VYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLT  165 (179)
Q Consensus        89 ~~~~~~~~v~~~~~~~~~~~~~~~~~-d~~--v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  165 (179)
                      .+......+..+++.|...+++.... .+.  |.--++.......... ..           -.....+++.+.++.|+.
T Consensus       116 l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~-~~-----------~~~P~glaiD~~~~~lYw  183 (263)
T d1npea_         116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ-DN-----------LGLPNGLTFDAFSSQLCW  183 (263)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC-TT-----------CSCEEEEEEETTTTEEEE
T ss_pred             EecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeee-ec-----------ccccceEEEeecCcEEEE
Confidence            33333456889999997766654432 223  4334454332222111 10           335678888887777755


Q ss_pred             Ee-CCCcEEEEee
Q 038439          166 AN-SQGTIKVLVL  177 (179)
Q Consensus       166 ~~-~dg~i~iwd~  177 (179)
                      +. ..+.|...++
T Consensus       184 ~d~~~~~I~~~~~  196 (263)
T d1npea_         184 VDAGTHRAECLNP  196 (263)
T ss_dssp             EETTTTEEEEEET
T ss_pred             EeCCCCEEEEEEC
Confidence            54 4667776664

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.97  E-value=0.1  Score=37.39  Aligned_cols=51  Identities=16%  Similarity=0.113  Sum_probs=32.4

Q ss_pred             CcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439          116 NEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA  179 (179)
Q Consensus       116 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  179 (179)
                      |.+.-+|+.+++.+-......+             +..-..+..+..+++|+.||.++.+|.+|
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p-------------~~~g~lstagglVF~Gt~dg~l~A~Da~T  516 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLP-------------LWAGVLATAGNLVFTGTGDGYFKAFDAKS  516 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSC-------------CCSCCEEETTTEEEEECTTSEEEEEETTT
T ss_pred             CeEEEEcCCCCcEEeecCCCCC-------------CccceeEEcCCeEEEeCCCCeEEEEECCC
Confidence            4566777777776655543222             11111234677888899999999999764

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.79  E-value=0.046  Score=39.33  Aligned_cols=62  Identities=3%  Similarity=-0.086  Sum_probs=43.7

Q ss_pred             CcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCC
Q 038439           74 STLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSS  136 (179)
Q Consensus        74 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~  136 (179)
                      +.+.-||+.+++.+-.... ......-.++..+.+++.|+.||.++.+|.++++.+-++....
T Consensus       453 G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~  514 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS  514 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             ceEEEEeCCCCceecccCC-CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCC
Confidence            4677888888877655432 1122222234457788889999999999999999998877643

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.08  E-value=0.78  Score=31.52  Aligned_cols=52  Identities=2%  Similarity=-0.119  Sum_probs=33.4

Q ss_pred             CceeEEEEeeC-CeEEEecCCCcEEEEecCCCccee--eec------CCCCCeEEEEEeeC
Q 038439           54 KAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVR--TFR------GHMNEKNFVGLTVN  105 (179)
Q Consensus        54 ~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~--~~~------~~~~~v~~~~~~~~  105 (179)
                      ..-++|+|.|+ ++|++--..|.|++++..+++...  .+.      ........++++|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            34568899999 565555457889888877654322  111      12345678999985

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.02  E-value=0.73  Score=30.41  Aligned_cols=93  Identities=14%  Similarity=0.066  Sum_probs=53.2

Q ss_pred             CCcEEEEecCCCcc-e---eeecC-CCCCeEEEEEeeCCCEEEEecc---------------CCcEEEEEcCCCcccccc
Q 038439           73 DSTLRLWDVKENLP-V---RTFRG-HMNEKNFVGLTVNSEYIACGSE---------------SNEVYVYHKEISKPVTWH  132 (179)
Q Consensus        73 d~~v~iwd~~~~~~-~---~~~~~-~~~~v~~~~~~~~~~~~~~~~~---------------d~~v~vwd~~~~~~~~~~  132 (179)
                      ..+|.+|++..... +   .++.. .....+.+....++.+++|-..               -+...+|....++.....
T Consensus       123 ~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~  202 (340)
T d1v04a_         123 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVA  202 (340)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEE
T ss_pred             CceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEc
Confidence            45677777643221 1   22222 1245678888888988887311               122334444333322111


Q ss_pred             ccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEe-CCCcEEEEeec
Q 038439          133 RFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN-SQGTIKVLVLA  178 (179)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~  178 (179)
                      .-             -...+.++++|++++|+++. ..++|++|++.
T Consensus       203 ~~-------------l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~  236 (340)
T d1v04a_         203 EG-------------FDFANGINISPDGKYVYIAELLAHKIHVYEKH  236 (340)
T ss_dssp             EE-------------ESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             CC-------------CCccceeEECCCCCEEEEEeCCCCeEEEEEeC
Confidence            11             34578899999998776554 47789999875

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=92.81  E-value=0.19  Score=33.34  Aligned_cols=72  Identities=6%  Similarity=-0.003  Sum_probs=43.1

Q ss_pred             EEEEEeeCCCEEEEeccCC-----------cEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEE
Q 038439           98 NFVGLTVNSEYIACGSESN-----------EVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTA  166 (179)
Q Consensus        98 ~~~~~~~~~~~~~~~~~d~-----------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  166 (179)
                      .......+|+.++.|+.+.           .+.+||+.+++-........+        + .......++.+++++++.|
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~--------~-~~~~~~~~~~~~g~i~v~G   93 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK--------H-DMFCPGISMDGNGQIVVTG   93 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS--------C-CCSSCEEEECTTSCEEEEC
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCC--------c-ccceeEEEEecCCcEEEee
Confidence            3344445777777776421           367899998764332111110        0 1122345678899999888


Q ss_pred             eCC-CcEEEEeec
Q 038439          167 NSQ-GTIKVLVLA  178 (179)
Q Consensus       167 ~~d-g~i~iwd~~  178 (179)
                      +.+ ..+.+||..
T Consensus        94 g~~~~~~~~yd~~  106 (387)
T d1k3ia3          94 GNDAKKTSLYDSS  106 (387)
T ss_dssp             SSSTTCEEEEEGG
T ss_pred             cCCCcceeEecCc
Confidence            765 578999864

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.43  E-value=1.7  Score=29.22  Aligned_cols=134  Identities=15%  Similarity=0.072  Sum_probs=75.2

Q ss_pred             CceeEEEEcCCCCeEEEEeCC-------------------Ccee-eecccCceeEEEEeeCCeEEEecCCCcEEEEecCC
Q 038439           24 ANICCVKYNPGSSNYIAKYQS-------------------TAPC-VHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKE   83 (179)
Q Consensus        24 ~~v~~~~~~~~~~~~~~~~~~-------------------~~~~-~~~~~~~i~~~~~~~~~~l~~~~~d~~v~iwd~~~   83 (179)
                      ....-++.++....+++++.+                   .... ....-..|..++|+.+ .++.. .++.+..++...
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d-~l~v~-~~~~l~~~~~~~  114 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD-QVLVS-TRNALYSLDLEE  114 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT-EEEEE-ESSEEEEEESSS
T ss_pred             cccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC-EEEEE-eCCCEEEEEeec
Confidence            346678888766455555511                   1111 1112235777888654 33333 345677777765


Q ss_pred             CcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeE
Q 038439           84 NLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTM  163 (179)
Q Consensus        84 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  163 (179)
                      -............+..+.++|.  .++....++.+.++++..++......-. ...     .. ...+.+++|++.|..+
T Consensus       115 l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v-~~~-----~~-~~~~~~v~ws~kgkq~  185 (381)
T d1xipa_         115 LSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNV-TSF-----DV-TNSQLAVLLKDRSFQS  185 (381)
T ss_dssp             TTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESE-EEE-----EE-CSSEEEEEETTSCEEE
T ss_pred             cccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCc-ceE-----Ee-cCCceEEEEeCCcEEE
Confidence            4333333333455677776664  5666677889999999887543221100 000     00 3457788888888888


Q ss_pred             EEEeC
Q 038439          164 LTANS  168 (179)
Q Consensus       164 ~~~~~  168 (179)
                      +++..
T Consensus       186 v~~~g  190 (381)
T d1xipa_         186 FAWRN  190 (381)
T ss_dssp             EEEET
T ss_pred             EEeCC
Confidence            77743

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.41  E-value=1.2  Score=30.59  Aligned_cols=62  Identities=8%  Similarity=0.078  Sum_probs=40.7

Q ss_pred             CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccC
Q 038439           94 MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD  159 (179)
Q Consensus        94 ~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  159 (179)
                      -...++|+|.|+|+++++--..|.|++++..+++...........    ...........++++|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~----~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIV----NDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCC----CCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccc----cccCCCCceeeEEeCCC
Confidence            456789999999998887656799999988876654333221110    00111456888999984

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.48  E-value=2.1  Score=27.81  Aligned_cols=64  Identities=9%  Similarity=-0.006  Sum_probs=46.7

Q ss_pred             eEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEE
Q 038439           57 SYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYV  120 (179)
Q Consensus        57 ~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~v  120 (179)
                      .++..++. +.+..-+.-|.+.+||+.++.++..-+-....|...+-..+..=++....+|.|..
T Consensus       259 vamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         259 VAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             EEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             EEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEEE
Confidence            46777777 88888999999999999999988776655666665555554444555566776643

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.96  E-value=3.4  Score=25.84  Aligned_cols=105  Identities=7%  Similarity=-0.143  Sum_probs=62.7

Q ss_pred             CceeEEEEcCCCCeEEEEeCC----------Cc--ee-eecccCceeEEEEeeC-CeEEEec--CCCcEEEEecCCCcce
Q 038439           24 ANICCVKYNPGSSNYIAKYQS----------TA--PC-VHGHKKAVSYVKFLSN-DELASAS--TDSTLRLWDVKENLPV   87 (179)
Q Consensus        24 ~~v~~~~~~~~~~~~~~~~~~----------~~--~~-~~~~~~~i~~~~~~~~-~~l~~~~--~d~~v~iwd~~~~~~~   87 (179)
                      ..+..+++.+.+..++.+-..          +.  .. +.........+++.|. +++.-..  ..+.|...++......
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~  156 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  156 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee
Confidence            346678887766566665411          11  11 3334455678888887 6665543  3345666666543333


Q ss_pred             eeecCCCCCeEEEEEeeCCCEEEEe-ccCCcEEEEEcCCCcc
Q 038439           88 RTFRGHMNEKNFVGLTVNSEYIACG-SESNEVYVYHKEISKP  128 (179)
Q Consensus        88 ~~~~~~~~~v~~~~~~~~~~~~~~~-~~d~~v~vwd~~~~~~  128 (179)
                      ......-.....+++.+.++.|+.+ ...+.|...++.....
T Consensus       157 ~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~  198 (266)
T d1ijqa1         157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR  198 (266)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             cccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCE
Confidence            3333334567889999877766655 5568888889876543