Citrus Sinensis ID: 038535

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
MRWDLWWNSTLKHTRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGLDPDCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVNHLDVWMQQQGSYKDRLRLYGHPKEGWDPKAIPKISGISFVNVVSVNTTKAPVLAGIIGTQFEEICMKNVSLLVQAPSVKWQCRFVSGFNGQ
ccccHHHccccccccccEEEEEEEEcEEEEcccEEEcccccEEEEEEEEcEEEEEEEEEcccccccccEEccccEEEEcccEEEEcccccccccccccccccEEEEEEEEccccccEEEEEEcccccEEEEEEEEEEEEEcccccEEEEEEEccccccccccccccEEEcEEEEcEEEEcccccEEEEccccccEEcEEEEcEEEEEEcccccEEEEEEEEEEcc
cHHHHHHHcccccccccEEEEEEcccEEEEEEEEEEcccccEEccEEcccEEEEEEEEEcccccccccccccccEEEEcccEEEEEccccccccEcccccccEEEEEEEEEcccccEEEEEcccccccEEEEEEEEEEEEccccEEEEEEEEccccccccccccccEEEEEEEEEEEEEEccEEEEEEccccccccEEEEEEEEEEEccccccEEEccEcccccc
mrwdlwwnstlkHTRGHLVELMNssniliisnltfcnspsrtihpvycrngfvkgmtvlsplsapntdgldpdcyiesgnglvavksgwdhdgiamarpssniavrrvsgttptcsgvgigremsGRIFNVTVNHLDVWMQQQgsykdrlrlyghpkegwdpkaipkisgisFVNVVSVNTTKAPVLAGIIGTQFEEICMKNVSLLvqapsvkwqcrfvsgfngq
MRWDLWWNSTLKHTRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGLDPDCYIESGNGLVAVKSGWDHDGIAMARpssniavrrvsgttptcsgvgigreMSGRIFNVTVNHLDVWMQQQGSYKDRLRLYGHPKEGWDPKAIPKISGISFVNVVSVNTTKAPVLAGIIGTQFEEICMKNVSLLvqapsvkwQCRFVSGFNGQ
MRWDLWWNSTLKHTRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGLDPDCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVNHLDVWMQQQGSYKDRLRLYGHPKEGWDPKAIPKISGISFVNVVSVNTTKAPVLAGIIGTQFEEICMKNVSLLVQAPSVKWQCRFVSGFNGQ
**WDLWWNSTLKHTRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGLDPDCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVNHLDVWMQQQGSYKDRLRLYGHPKEGWDPKAIPKISGISFVNVVSVNTTKAPVLAGIIGTQFEEICMKNVSLLVQAPSVKWQCRFVSGF***
MRWDLWWNSTLKHTRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGLDPDCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVNHLDVWMQQQGSYKDRLRLYGHPKEGWDPKAIPKISGISFVNVVSVNTTKAPVLAGIIGTQFEEICMKNVSLLVQAPSVKWQCRFVSGFN**
MRWDLWWNSTLKHTRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGLDPDCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVNHLDVWMQQQGSYKDRLRLYGHPKEGWDPKAIPKISGISFVNVVSVNTTKAPVLAGIIGTQFEEICMKNVSLLVQAPSVKWQCRFVSGFNGQ
MRWDLWWNSTLKHTRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGLDPDCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVNHLDVWMQQQGSYKDRLRLYGHPKEGWDPKAIPKISGISFVNVVSVNTTKAPVLAGIIGTQFEEICMKNVSLLVQAPSVKWQCRFVS*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRWDLWWNSTLKHTRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGLDPDCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVNHLDVWMQQQGSYKDRLRLYGHPKEGWDPKAIPKISGISFVNVVSVNTTKAPVLAGIIGTQFEEICMKNVSLLVQAPSVKWQCRFVSGFNGQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query225 2.2.26 [Sep-21-2011]
A7PZL3491 Probable polygalacturonas no no 0.968 0.443 0.366 5e-38
P27644312 Polygalacturonase OS=Rhiz yes no 0.48 0.346 0.317 8e-06
P18192402 Endo-polygalacturonase OS N/A no 0.777 0.435 0.285 4e-05
P26509402 Endo-polygalacturonase OS N/A no 0.777 0.435 0.285 5e-05
Q9LW07 456 Probable polygalacturonas no no 0.355 0.175 0.326 0.0004
>sp|A7PZL3|PGLR_VITVI Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1 Back     alignment and function desciption
 Score =  157 bits (398), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 96/262 (36%), Positives = 138/262 (52%), Gaps = 44/262 (16%)

Query: 5   LWWN----STLKHTRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLS 60
           LWW       LK+TR +L+ELM S++I  ISNLT  NSPS  +HPVY RN  ++G+T+L+
Sbjct: 184 LWWQRFHGGKLKYTRPYLIELMYSADIQ-ISNLTLLNSPSWNVHPVYSRNILIQGITILA 242

Query: 61  PLSAPNTDGLDP---------DCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGT 111
           P+ +PNTDG++P         DCYI SG+  VAVKSGWD  GIA   P+  + +RR++  
Sbjct: 243 PVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCI 302

Query: 112 TPTCSGVGIGREMSGRIFNVTVNHLDVWMQQ----------QGSYKDRLRLYG------- 154
           +P  + + +G EMSG I +V    +     +          +G Y   + + G       
Sbjct: 303 SPYSAVIALGSEMSGGIQDVRAEDIVAINSESGIRIKTGIGRGGYVKDIYVRGMTMKTMK 362

Query: 155 -----------HPKEGWDPKAIPKISGISFVNVVSVNTTKAPVLAGIIGTQFEEICMKNV 203
                      H    +DPKA P I GI++ ++V+ N + A  L GI    F  IC+ NV
Sbjct: 363 WAFWMTGNYGSHADNHYDPKAFPVIQGINYRDMVAENVSMAARLEGIPSDPFTGICISNV 422

Query: 204 S--LLVQAPSVKWQCRFVSGFN 223
           +  L  +A  V W C  V G +
Sbjct: 423 TIHLAAKAKKVPWTCTDVEGIS 444

Vitis vinifera (taxid: 29760)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|P27644|PGLR_RHIRD Polygalacturonase OS=Rhizobium radiobacter GN=pgl PE=2 SV=1 Back     alignment and function description
>sp|P18192|PGLR1_PECCC Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum GN=peh PE=3 SV=1 Back     alignment and function description
>sp|P26509|PGLR2_PECSS Endo-polygalacturonase OS=Pectobacterium sp. (strain SCC3193) GN=pehA PE=1 SV=1 Back     alignment and function description
>sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query225
224096000 445 predicted protein [Populus trichocarpa] 0.982 0.496 0.590 3e-75
296088539 528 unnamed protein product [Vitis vinifera] 0.982 0.418 0.583 6e-74
225431447 488 PREDICTED: probable polygalacturonase [V 0.982 0.452 0.583 7e-74
449532729 332 PREDICTED: probable polygalacturonase-li 0.982 0.665 0.571 9e-74
449459262 472 PREDICTED: probable polygalacturonase-li 0.986 0.470 0.569 2e-73
147776708 479 hypothetical protein VITISV_043959 [Viti 0.982 0.461 0.579 3e-73
224083446 394 predicted protein [Populus trichocarpa] 0.982 0.560 0.579 3e-72
255571381 480 polygalacturonase, putative [Ricinus com 0.995 0.466 0.568 4e-71
356516364 477 PREDICTED: probable polygalacturonase-li 0.982 0.463 0.555 5e-70
357464681 775 Germin-like protein [Medicago truncatula 0.982 0.285 0.536 9e-70
>gi|224096000|ref|XP_002310517.1| predicted protein [Populus trichocarpa] gi|222853420|gb|EEE90967.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 153/259 (59%), Positives = 175/259 (67%), Gaps = 38/259 (14%)

Query: 1   MRWDLWWNSTLKHTRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLS 60
           M W+LWWN TL+HTRGHLVELMNS+NILI +NLTFCN+P  TIHPVYC N  VK MT+L+
Sbjct: 156 MWWELWWNRTLEHTRGHLVELMNSNNILI-ANLTFCNAPFWTIHPVYCSNVVVKDMTILA 214

Query: 61  PLSAPNTDGLDPD---------CYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGT 111
           PL APNTDG+DPD         CYIESG+ LVAVKSGWD  GI MARPSSNI VRRVSGT
Sbjct: 215 PLKAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDQYGIKMARPSSNIVVRRVSGT 274

Query: 112 TPTCSGVGIGREMSGRIFNVTVNHLDVWMQQ----------QGSY----------KDRLR 151
           TPTCSGVGIG EMSG IFN+T+  L VW             +G Y           +R++
Sbjct: 275 TPTCSGVGIGSEMSGGIFNITIEDLHVWDSAAGVRIKTDNGRGGYIANITISNVTMERVK 334

Query: 152 L--------YGHPKEGWDPKAIPKISGISFVNVVSVNTTKAPVLAGIIGTQFEEICMKNV 203
           +          HP EGWDPKA+P + GIS  NV+S N+TKAPVL G+    F  ICMKNV
Sbjct: 335 VPIRFSRGSNDHPDEGWDPKAVPVVKGISIRNVISFNSTKAPVLEGVEDAPFGGICMKNV 394

Query: 204 SLLVQAPSVKWQCRFVSGF 222
           SLL    S+ W C FVSGF
Sbjct: 395 SLLGVVSSLSWHCEFVSGF 413

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296088539|emb|CBI37530.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225431447|ref|XP_002274138.1| PREDICTED: probable polygalacturonase [Vitis vinifera] Back     alignment and taxonomy information
>gi|449532729|ref|XP_004173333.1| PREDICTED: probable polygalacturonase-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|449459262|ref|XP_004147365.1| PREDICTED: probable polygalacturonase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147776708|emb|CAN76963.1| hypothetical protein VITISV_043959 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224083446|ref|XP_002307030.1| predicted protein [Populus trichocarpa] gi|222856479|gb|EEE94026.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255571381|ref|XP_002526639.1| polygalacturonase, putative [Ricinus communis] gi|223534031|gb|EEF35751.1| polygalacturonase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356516364|ref|XP_003526865.1| PREDICTED: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|357464681|ref|XP_003602622.1| Germin-like protein [Medicago truncatula] gi|355491670|gb|AES72873.1| Germin-like protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query225
TAIR|locus:2119156475 AT4G33440 [Arabidopsis thalian 0.768 0.364 0.569 2.8e-50
TAIR|locus:2101313469 AT3G48950 [Arabidopsis thalian 0.577 0.277 0.45 1.7e-40
TAIR|locus:2098038471 AT3G62110 [Arabidopsis thalian 0.626 0.299 0.516 5.7e-36
TAIR|locus:2202170506 AT1G19170 [Arabidopsis thalian 0.613 0.272 0.444 1.5e-34
TAIR|locus:2128524444 AT4G23820 [Arabidopsis thalian 0.586 0.297 0.496 1.8e-32
TAIR|locus:2152980449 AT5G41870 [Arabidopsis thalian 0.6 0.300 0.486 6.9e-31
TAIR|locus:504954979449 AT5G49215 [Arabidopsis thalian 0.582 0.291 0.390 1.9e-29
TAIR|locus:2082787476 AT3G61490 [Arabidopsis thalian 0.626 0.296 0.423 2.6e-28
TAIR|locus:2117964495 AT4G23500 [Arabidopsis thalian 0.555 0.252 0.453 5.1e-27
TAIR|locus:2078531484 AT3G42950 [Arabidopsis thalian 0.613 0.285 0.411 1.3e-26
TAIR|locus:2119156 AT4G33440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 111/195 (56%), Positives = 132/195 (67%)

Query:     1 MRWDLWWNSTLKHTRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLS 60
             M W+LWWN TL HTRGHL+EL NS NILI SNLT  NSP  TIHPVYC N  ++ MT+L+
Sbjct:   193 MWWELWWNRTLVHTRGHLIELKNSHNILI-SNLTLLNSPFWTIHPVYCSNVVIRNMTILA 251

Query:    61 PLSAPNTDGLDPD---------CYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGT 111
             P++APNTDG+DPD         CYIESG+ LVAVKSGWD  G+A+ARPSSNI +RR+SGT
Sbjct:   252 PMNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDQYGMAVARPSSNIVIRRISGT 311

Query:   112 TPTCSGVGIGREMSGRIFNVTVNHLDVWMQQQGSYKDRLRLYGHPKEGWDPKAIPKISGI 171
             T TCSGVGIG EMSG IFN+TV  + VW    G     LR+      G        IS I
Sbjct:   312 TRTCSGVGIGSEMSGGIFNITVEDIHVWDSAAG-----LRIKTDKGRGG------YISNI 360

Query:   172 SFVNVVSVNTTKAPV 186
             +F NV+ +   K P+
Sbjct:   361 TFNNVL-LEKVKVPI 374
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
TAIR|locus:2101313 AT3G48950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098038 AT3G62110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202170 AT1G19170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128524 AT4G23820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152980 AT5G41870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504954979 AT5G49215 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082787 AT3G61490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117964 AT4G23500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078531 AT3G42950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.VII.1454.1
hypothetical protein (420 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query225
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 4e-10
PLN03003 456 PLN03003, PLN03003, Probable polygalacturonase At3 2e-05
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 2e-04
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information 
 Score = 58.7 bits (142), Expect = 4e-10
 Identities = 45/138 (32%), Positives = 63/138 (45%), Gaps = 16/138 (11%)

Query: 12  KHTRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGLD 71
           K  R   V L    N+L+   L   NSP  T+HPV C N   + +T+ +     NTDG D
Sbjct: 234 KGVRPRTVVLKGCRNVLL-EGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFD 291

Query: 72  PD---------CYIESGNGLVAVKSGWDHDGIAMARPSSNIAVR--RVSGTTPTCSGVGI 120
           P          C  ++G+  +A+KSG   DG     PS NI +R    S       G+ +
Sbjct: 292 PGSCSNVLIEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGH---GGLVL 348

Query: 121 GREMSGRIFNVTVNHLDV 138
           G EM G + N+TV    +
Sbjct: 349 GSEMGGGVQNITVEDCVM 366

Length = 542
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 225
PLN02218431 polygalacturonase ADPG 100.0
PLN02155394 polygalacturonase 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PLN02793443 Probable polygalacturonase 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
PLN03010409 polygalacturonase 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.95
PLN02218431 polygalacturonase ADPG 99.72
PLN03003 456 Probable polygalacturonase At3g15720 99.7
PLN03010409 polygalacturonase 99.68
PLN02793443 Probable polygalacturonase 99.68
PLN02155394 polygalacturonase 99.67
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.65
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.59
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.47
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.1
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.08
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 97.94
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 97.91
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 97.91
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.76
smart00656190 Amb_all Amb_all domain. 97.62
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.43
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.03
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 96.83
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 96.82
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 96.74
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 96.74
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 96.74
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 96.51
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 96.1
smart00656190 Amb_all Amb_all domain. 95.81
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 95.67
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 95.61
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 95.29
PLN02480343 Probable pectinesterase 91.9
PLN02773317 pectinesterase 89.8
PLN02773317 pectinesterase 85.09
PF09251 549 PhageP22-tail: Salmonella phage P22 tail-spike; In 81.05
PF09251 549 PhageP22-tail: Salmonella phage P22 tail-spike; In 80.6
>PLN02218 polygalacturonase ADPG Back     alignment and domain information 
Probab=100.00  E-value=1.9e-42  Score=312.27  Aligned_cols=205  Identities=18%  Similarity=0.286  Sum_probs=176.4

Q ss_pred             CcccccccCC---CCCCCceeEEEEeecCeeEEeceEEeCCCCceEEeeeeecEEEEeEEEECCCCCCCCceecc-----
Q 038535            1 MRWDLWWNST---LKHTRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGLDP-----   72 (225)
Q Consensus         1 ~wW~~~~~~~---~~~~rp~~i~~~~~~nv~~i~gv~l~n~~~w~i~~~~c~nV~v~~~~i~~~~~~~ntDGid~-----   72 (225)
                      .||+......   ....||++|.|++|+|++ |+||+|+|||+|++++.+|+||.|+|++|.++.+++||||||+     
T Consensus       174 ~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~-I~gitl~nSp~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~n  252 (431)
T PLN02218        174 TWWQNSCKRNKAKPCTKAPTALTFYNSKSLI-VKNLRVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQN  252 (431)
T ss_pred             hhhhcccccCCcCccCcCCEEEEEEccccEE-EeCeEEEcCCCEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccce
Confidence            4997654221   135799999999999999 9999999999999999999999999999999888999999999     


Q ss_pred             ----cceeeeCCceEEeecCCCCCCccCCCCeecEEEEeEEEeCCCCCEEEEeccc----cCcEEeEEEEeeEEEcCCC-
Q 038535           73 ----DCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREM----SGRIFNVTVNHLDVWMQQQ-  143 (225)
Q Consensus        73 ----~c~i~~gDD~i~iks~~~~~g~~~~~~~~nV~v~nc~~~~~~~~gi~iGs~~----~~~v~ni~~~n~~~~~~~~-  143 (225)
                          ||+|.+|||||+||++           ++||+|+||+|..+  |||+|||+.    .+.|+||+|+||+|.++.+ 
T Consensus       253 V~I~n~~I~tGDDcIaIksg-----------s~nI~I~n~~c~~G--HGisIGS~g~~~~~~~V~nV~v~n~~~~~t~nG  319 (431)
T PLN02218        253 IRVSNSIIGTGDDCISIESG-----------SQNVQINDITCGPG--HGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNG  319 (431)
T ss_pred             EEEEccEEecCCceEEecCC-----------CceEEEEeEEEECC--CCEEECcCCCCCCCceEEEEEEEccEEecCCcc
Confidence                9999999999999996           79999999999754  899999996    3579999999999999875 


Q ss_pred             ---------CcEEEeEEEee-------cC---CCCcCC-------CCCCcEEeEEEEEEEEeCCC-ceeEEEecCCCCee
Q 038535          144 ---------GSYKDRLRLYG-------HP---KEGWDP-------KAIPKISGISFVNVVSVNTT-KAPVLAGIIGTQFE  196 (225)
Q Consensus       144 ---------Gg~v~nI~~~~-------~~---~~~~~~-------~~~~~i~~It~~ni~~~~~~-~~~~i~g~~~~~v~  196 (225)
                               +|.|+||+|++       .|   ++.|.+       ...+.|+||+|+||+++.+. .++.|.|+++.||+
T Consensus       320 vRIKT~~Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~~~~s~v~I~nI~~~NI~gtsa~~~ai~l~cs~~~pc~  399 (431)
T PLN02218        320 VRIKTYQGGSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTSQQSAVQVKNVVYRNISGTSASDVAITFNCSKNYPCQ  399 (431)
T ss_pred             eEEeecCCCCeEEEEEEEEeEEEEcccccEEEEeeccCCCCCCCCCCCeEEEEEEEEeEEEEecCCcEEEEEECCCCCEe
Confidence                     37899998884       22   344532       23458999999999999764 58899999999999


Q ss_pred             cEEEEeEEEEecCCCcceEEEeeEeec
Q 038535          197 EICMKNVSLLVQAPSVKWQCRFVSGFN  223 (225)
Q Consensus       197 ~i~~~Nv~i~~~~~~~~~~c~~v~g~~  223 (225)
                      ||+|+||.+.+.+    -.|.+|+|..
T Consensus       400 nI~l~nV~i~~~~----~~c~n~~~~~  422 (431)
T PLN02218        400 GIVLDNVNIKGGK----ATCTNANVVD  422 (431)
T ss_pred             eEEEEeEEEECCe----eeEEEeeEEE
Confidence            9999999998643    6799999875

>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query225
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 9e-12
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 5e-06
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure 
Iteration: 1

 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 24/184 (13%)
Query: 13  HTRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGLDP 72
           + R   V+     N+L+   +   NSP   IHPV   N  ++ + + S  + PN DG+DP
Sbjct: 187 YLRPSFVQFYRCRNVLV-EGVKIINSPMWCIHPVLSENVIIRNIEISS--TGPNNDGIDP 243
Query: 73  D---------CYIESGNGLVAVKSGWDHDGIAMARPSSNIAVR-RVSGTTPTCSGVGIGR 122
           +         C  ++G+  V +KSG D DG  +  PS  I VR  +  +  +  G+ IG 
Sbjct: 244 ESCKYMLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGS 303
Query: 123 EMSGRIFNVTVNHLDVWMQQQGSYKDRLRLYGHPKEGWDPKAIPKISGISFVNVVSVNTT 182
           EMSG + NV   + +V+M  + +    LRL  + + G        +  I F++ V+VN +
Sbjct: 304 EMSGGVRNVVARN-NVYMNVERA----LRLKTNSRRGG------YMENIFFIDNVAVNVS 352
Query: 183 KAPV 186
           +  +
Sbjct: 353 EEVI 356
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query225
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 1e-42
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 4e-38
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 3e-34
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 1e-22
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 3e-20
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 7e-20
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 2e-17
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 2e-16
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 2e-15
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 2e-12
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 5e-12
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 4e-10
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 8e-07
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 3e-06
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
 Score =  148 bits (375), Expect = 1e-42
 Identities = 51/249 (20%), Positives = 94/249 (37%), Gaps = 37/249 (14%)

Query: 3   WDLWWNSTLKHTRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPL 62
            +        + R   V+     N+L+   +   NSP   IHPV   N  ++ + + S  
Sbjct: 177 VEERVFGKGHYLRPSFVQFYRCRNVLV-EGVKIINSPMWCIHPVLSENVIIRNIEISST- 234

Query: 63  SAPNTDGLDPD---------CYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRR-VSGTT 112
             PN DG+DP+         C  ++G+  V +KSG D DG  +  PS  I VR  +  + 
Sbjct: 235 -GPNNDGIDPESCKYMLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQ 293

Query: 113 PTCSGVGIGREMSGRIFNVTVNHLDV-----------WMQQQGSYKD----RLRLYGHPK 157
            +  G+ IG EMSG + NV   +                ++ G  ++            +
Sbjct: 294 ASHGGLVIGSEMSGGVRNVVARNNVYMNVERALRLKTNSRRGGYMENIFFIDNVAVNVSE 353

Query: 158 E---------GWDPKAIPKISGISFVNVVSVNTTKAPVLAGIIGTQFEEICMKNVSLLVQ 208
           E           + + +P +  +   N+ +     A  + G+     ++I + +  +   
Sbjct: 354 EVIRINLRYDNEEGEYLPVVRSVFVKNLKATGGKYAVRIEGLENDYVKDILISDTIIEGA 413

Query: 209 APSVKWQCR 217
             SV  +  
Sbjct: 414 KISVLLEFG 422
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query225
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.96
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.96
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.95
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.82
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.82
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.76
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.75
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.74
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.74
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.74
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.69
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.69
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.69
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.67
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.67
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.65
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.63
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.63
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 99.5
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.3
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.21
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.19
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.14
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.13
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.47
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.75
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.74
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.57
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 97.37
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.16
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.1
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.05
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 96.91
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.9
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.75
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 96.55
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 96.54
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 96.43
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 96.43
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 96.32
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 96.31
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 96.15
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 95.79
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 95.53
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 94.31
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 93.89
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 92.79
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 91.95
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 91.52
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 91.34
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 90.75
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 88.72
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 88.16
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 88.15
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 87.87
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 86.91
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 86.2
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 84.4
2inu_A410 Insulin fructotransferase; right-handed parallel b 83.06
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=1.6e-42  Score=314.48  Aligned_cols=202  Identities=25%  Similarity=0.425  Sum_probs=177.5

Q ss_pred             CCCCceeEEEEeecCeeEEeceEEeCCCCceEEeeeeecEEEEeEEEECCCCCCCCceecc---------cceeeeCCce
Q 038535           12 KHTRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGLDP---------DCYIESGNGL   82 (225)
Q Consensus        12 ~~~rp~~i~~~~~~nv~~i~gv~l~n~~~w~i~~~~c~nV~v~~~~i~~~~~~~ntDGid~---------~c~i~~gDD~   82 (225)
                      ...||++|.|.+|+|++ |+|++++|||+|++++..|+||+|++++|.++  ++|+||||+         ||+|.++|||
T Consensus       186 ~~~RP~~i~~~~~~nv~-i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~nV~I~n~~i~~gDDc  262 (448)
T 3jur_A          186 HYLRPSFVQFYRCRNVL-VEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYMLIEKCRFDTGDDS  262 (448)
T ss_dssp             CCCCCCSEEEESCEEEE-EESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEEEEEESCEEEESSEE
T ss_pred             ccCCceEEEEEcccceE-EEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcCEEEEeeEEEeCCCc
Confidence            35899999999999999 99999999999999999999999999999997  789999999         9999999999


Q ss_pred             EEeecCCCCCCccCCCCeecEEEEeEEEeCCC-CCEEEEeccccCcEEeEEEEeeEEEcCCC----------CcEEEeEE
Q 038535           83 VAVKSGWDHDGIAMARPSSNIAVRRVSGTTPT-CSGVGIGREMSGRIFNVTVNHLDVWMQQQ----------GSYKDRLR  151 (225)
Q Consensus        83 i~iks~~~~~g~~~~~~~~nV~v~nc~~~~~~-~~gi~iGs~~~~~v~ni~~~n~~~~~~~~----------Gg~v~nI~  151 (225)
                      |++|++++.+|.++..|++||+|+||+|++.. ++||+|||++.++++||+|+||+|.++.+          ||.|+||+
T Consensus       263 Iaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~~~~v~nV~v~n~~~~~t~~GirIKt~~g~gG~v~nI~  342 (448)
T 3jur_A          263 VVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNVVARNNVYMNVERALRLKTNSRRGGYMENIF  342 (448)
T ss_dssp             EEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSCTTCEEEEEEESCEEESCSEEEEEECCTTTCSEEEEEE
T ss_pred             EEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcccCcEEEEEEEEEEEecccceEEEEEEcCCCceEeeEE
Confidence            99999998888888889999999999995322 45999999999999999999999998754          58999999


Q ss_pred             Eeec-------C----CCCcC---CCCCCcEEeEEEEEEEEeCCCceeEEEecCCCCeecEEEEeEEEEecCCCcceEEE
Q 038535          152 LYGH-------P----KEGWD---PKAIPKISGISFVNVVSVNTTKAPVLAGIIGTQFEEICMKNVSLLVQAPSVKWQCR  217 (225)
Q Consensus       152 ~~~~-------~----~~~~~---~~~~~~i~~It~~ni~~~~~~~~~~i~g~~~~~v~~i~~~Nv~i~~~~~~~~~~c~  217 (225)
                      |++.       |    ++.|.   +...|.|+||+|+||+++..+.++.|.|+++.||+||+|+||++++.+  .+..|.
T Consensus       343 f~ni~m~~v~~~~i~I~~~Y~~~~~~~~~~i~nI~~~NI~~t~~~~~i~i~g~~~~p~~~I~~~nv~i~~~~--~~~~~~  420 (448)
T 3jur_A          343 FIDNVAVNVSEEVIRINLRYDNEEGEYLPVVRSVFVKNLKATGGKYAVRIEGLENDYVKDILISDTIIEGAK--ISVLLE  420 (448)
T ss_dssp             EESCEEEEESSEEEEEESCGGGCCCSCCCEEEEEEEESCEEEECSEEEEEECBTTBCEEEEEEEEEEEESCS--EEEEEE
T ss_pred             EEEEEEECCccccEEEEeeccCCCCCCCceEEEEEEEeEEEEecceEEEEEeCCCCCEeeEEEEEEEEEccc--cceeEe
Confidence            9842       2    24453   235679999999999999877899999999999999999999999765  234555


Q ss_pred             e
Q 038535          218 F  218 (225)
Q Consensus       218 ~  218 (225)
                      +
T Consensus       421 ~  421 (448)
T 3jur_A          421 F  421 (448)
T ss_dssp             E
T ss_pred             c
Confidence            4
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 225
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 2e-17
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 3e-14
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-11
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 7e-11
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 8e-11
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 4e-10
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 2e-08
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 1e-07
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

 Score = 77.9 bits (191), Expect = 2e-17
 Identities = 61/263 (23%), Positives = 96/263 (36%), Gaps = 63/263 (23%)

Query: 2   RWDLWWN-------STLKHTRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVK 54
           +   WW          LK     L+++  S N  +  N++  NSP+  +           
Sbjct: 130 KKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTL-YNVSLINSPNFHVVFSDGDGFTAW 188

Query: 55  GMTVLSPLSAPNTDGLDP---------DCYIESGNGLVAVKSGWDHDGIAMARPSSNIAV 105
             T+ +P +A NTDG+DP            I +G+  VA+K+            + NI++
Sbjct: 189 KTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGRA------ETRNISI 242

Query: 106 RRVSGTTPTCSGVGIGREMSGRIFNVTVNHLDVWMQQQGSYKDRLRLYGHPK-------- 157
                   T  G+ IG E  G ++NVTV+ L +     G     LR+             
Sbjct: 243 LHN--DFGTGHGMSIGSETMG-VYNVTVDDLKMNGTTNG-----LRIKSDKSAAGVVNGV 294

Query: 158 --------------------EGWDPKAIPKISGISFVNVVSVNTTKAPVLAGIIGTQFEE 197
                               E  +   +P  S I+F +V S  T    VL G    +  E
Sbjct: 295 RYSNVVMKNVAKPIVIDTVYEKKEGSNVPDWSDITFKDVTS-ETKGVVVLNGENAKKPIE 353

Query: 198 ICMKNVSLLVQAPSVKWQCRFVS 220
           + MKNV L   +    WQ + V+
Sbjct: 354 VTMKNVKLTSDST---WQIKNVN 373
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query225
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.96
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.68
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.62
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.62
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.58
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.56
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.44
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.43
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.36
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.01
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.38
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.36
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.13
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 95.96
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.95
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.85
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.43
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 94.82
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 94.25
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 93.26
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 90.85
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 89.2
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 87.79
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=100.00  E-value=7.9e-41  Score=291.64  Aligned_cols=204  Identities=18%  Similarity=0.156  Sum_probs=172.4

Q ss_pred             CcccccccCCCCCCCceeEEEEeecCeeEEeceEEeCCCCceEEeeeeecEEEEeEEEECCC----CCCCCceecc----
Q 038535            1 MRWDLWWNSTLKHTRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPL----SAPNTDGLDP----   72 (225)
Q Consensus         1 ~wW~~~~~~~~~~~rp~~i~~~~~~nv~~i~gv~l~n~~~w~i~~~~c~nV~v~~~~i~~~~----~~~ntDGid~----   72 (225)
                      .||+.+.... ...||++|.|.+|+|++ |+||+|+|||+|++++.+|+||+|+|++|.++.    .++|+||||+    
T Consensus        90 ~wW~~~~~~~-~~~rP~~l~~~~~~nv~-i~gitl~nsp~w~~~~~~s~nv~i~~v~I~~~~~~~~~~~NtDGidi~~s~  167 (339)
T d1ia5a_          90 RWWDGEGGNG-GKTKPKFFAAHSLTNSV-ISGLKIVNSPVQVFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTST  167 (339)
T ss_dssp             GTCSSCTTTS-SSCCCCCEEEEEEEEEE-EESCEEECCSSCCEEEESCEEEEEESCEEECGGGTTTTCCSCCSEEEESCE
T ss_pred             hhhhcccCCC-CCCCCeEEEEEecCCCE-EeceEEEcCCceEEEEecccEEEEEEEEEecccCCccCCCCCCccccCCCC
Confidence            4999876543 46899999999999999 999999999999999999999999999999863    4689999999    


Q ss_pred             -----cceeeeCCceEEeecCCCCCCccCCCCeecEEEEeEEEeCCCCCEEEE---eccccCcEEeEEEEeeEEEcCCC-
Q 038535           73 -----DCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGI---GREMSGRIFNVTVNHLDVWMQQQ-  143 (225)
Q Consensus        73 -----~c~i~~gDD~i~iks~~~~~g~~~~~~~~nV~v~nc~~~~~~~~gi~i---Gs~~~~~v~ni~~~n~~~~~~~~-  143 (225)
                           ||+|.++||||++|+            .+||+|+||+|..+  ||+++   |+++.+.|+||+|+||+|.++.+ 
T Consensus       168 nV~I~n~~i~~gDDcIaiks------------~~ni~i~n~~c~~g--hG~sigslG~~~~~~v~nV~v~n~~~~~t~~G  233 (339)
T d1ia5a_         168 YVTISGATVYNQDDCVAVNS------------GENIYFSGGYCSGG--HGLSIGSVGGRSDNTVKNVTFVDSTIINSDNG  233 (339)
T ss_dssp             EEEEESCEEECSSCSEEESS------------EEEEEEESCEEESS--SCEEEEEECSSSCCEEEEEEEEEEEEESCSEE
T ss_pred             eEEEeeeEEEcCCCeEEecC------------ccEEEEEEeEEecc--ccceecccccCccccEEEEEEECCcccCCcce
Confidence                 999999999999998            48999999999976  78766   55677889999999999999875 


Q ss_pred             ---------CcEEEeEEEeec--------C---CCCcC-----CCCCCcEEeEEEEEEEEeCCC-ceeEEEecCCCCeec
Q 038535          144 ---------GSYKDRLRLYGH--------P---KEGWD-----PKAIPKISGISFVNVVSVNTT-KAPVLAGIIGTQFEE  197 (225)
Q Consensus       144 ---------Gg~v~nI~~~~~--------~---~~~~~-----~~~~~~i~~It~~ni~~~~~~-~~~~i~g~~~~~v~~  197 (225)
                               +|.|+||+|++.        |   ++.|.     +...+.|+||+|+||+++... .+..+.|.++.||+|
T Consensus       234 irIKt~~g~~G~v~nV~f~ni~~~~v~~~pI~I~~~Y~~~~~~~~~~v~i~nI~~~Ni~gt~~~~~~~~~~~~~~~p~~n  313 (339)
T d1ia5a_         234 VRIKTNIDTTGSVSDVTYKDITLTSIAKYGIVVQQNYGDTSSTPTTGVPITDFVLDNVHGSVVSSGTNILISCGSGSCSD  313 (339)
T ss_dssp             EEEEEETTCCCEEEEEEEEEEEEEEESSEEEEEEEEETCTTSCCCSSSCEEEEEEEEEEEEECTTSEEEEEECCTTCEEE
T ss_pred             eEEeeeCCCCEEEEEEEEEEEEEeccccccEEEEeecCCCCCCCCCCcEEEeEEEEeEEEEecccCceEEEeCCCCCEec
Confidence                     478999888841        1   22342     223347999999999998754 467788999999999


Q ss_pred             EEEEeEEEEecCCCcceEEEeeEee
Q 038535          198 ICMKNVSLLVQAPSVKWQCRFVSGF  222 (225)
Q Consensus       198 i~~~Nv~i~~~~~~~~~~c~~v~g~  222 (225)
                      |+|+||++++.+  ....|.+|+|.
T Consensus       314 i~~~nV~itg~~--~~~~C~nv~~~  336 (339)
T d1ia5a_         314 WTWTDVSVSGGK--TSSKCTNVPSG  336 (339)
T ss_dssp             EEEEEEEEESSB--CCSCCBSCCTT
T ss_pred             eEEEeEEEcCCC--cceEeECCCcc
Confidence            999999998654  56789999874
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure