Citrus Sinensis ID: 038550
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 423 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SN39 | 871 | Pentatricopeptide repeat- | yes | no | 0.971 | 0.471 | 0.409 | 1e-91 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.955 | 0.517 | 0.400 | 1e-87 | |
| Q9LW63 | 715 | Putative pentatricopeptid | no | no | 0.947 | 0.560 | 0.382 | 3e-85 | |
| Q9CAA8 | 743 | Putative pentatricopeptid | no | no | 0.964 | 0.549 | 0.374 | 1e-84 | |
| Q9LFL5 | 850 | Pentatricopeptide repeat- | no | no | 0.976 | 0.485 | 0.385 | 1e-82 | |
| Q9LIQ7 | 633 | Pentatricopeptide repeat- | no | no | 0.976 | 0.652 | 0.369 | 1e-82 | |
| Q0WN60 | 970 | Pentatricopeptide repeat- | no | no | 0.976 | 0.425 | 0.375 | 1e-82 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.978 | 0.593 | 0.350 | 1e-82 | |
| Q7Y211 | 890 | Pentatricopeptide repeat- | no | no | 0.976 | 0.464 | 0.362 | 4e-81 | |
| O81767 | 823 | Pentatricopeptide repeat- | no | no | 0.978 | 0.503 | 0.356 | 7e-81 |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 337 bits (864), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 171/418 (40%), Positives = 265/418 (63%), Gaps = 7/418 (1%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MY+K A +F ++++++VS+ +M+A +A+ L +A++L EM P+ T
Sbjct: 340 MYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYT 399
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
+T VL CAR L GK +H I L FD+F++NAL DMYAKCG + A+ VF+ +
Sbjct: 400 VTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMR 459
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH---DVVSFMGAISACANLAAIKQ 176
+D +S+N +I GYS+ +E+LSLF+ LL K D + + ACA+L+A +
Sbjct: 460 VKDIISWNTIIGGYSKNCYANEALSLFN--LLLEEKRFSPDERTVACVLPACASLSAFDK 517
Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
G+EIHG +R + VANS++D Y + G + LA+ +FD + KD SW +I GYGM
Sbjct: 518 GREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGM 577
Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEM 295
G AI LF MR+ G+ D +S++++L ACSH GLV++G ++F+ M+ + ++PT
Sbjct: 578 HGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVE 637
Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
HYAC+VD+L R G + A + I+N+P+ PDA IWGALL CRI+ +V+L AE +F L
Sbjct: 638 HYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFEL 697
Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
+P++ GYY+L++N+YAEA KW++ ++R+ + R +KNPGCSW++ + V FV D
Sbjct: 698 EPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGD 755
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 323 bits (829), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 166/414 (40%), Positives = 255/414 (61%), Gaps = 10/414 (2%)
Query: 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
YA+S + EA LF +++ +W AMV+ + QNR+ +A +L +MP NE V+
Sbjct: 260 YAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNE----VSW 315
Query: 62 TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
+L +G + KE+ + + ++ N + YA+CG ++ A+N+F+ +
Sbjct: 316 NAMLAGYVQGERMEMAKELFDVMPCRNVS----TWNTMITGYAQCGKISEAKNLFDKMPK 371
Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
RD VS+ +I GYSQ+ E+L LF +M G + + SF A+S CA++ A++ GK++
Sbjct: 372 RDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQL 431
Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
HG ++ T FV N++L Y + G I+ AN +F + KD SWNT+I GY G
Sbjct: 432 HGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFG 491
Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
+ A+ FE+M+ +G+ D + +A+L+ACSH GLV+KG++YF M D V P HYAC
Sbjct: 492 EVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYAC 551
Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
MVDLLGRAGL+EDA L+KN+P EPDA IWG LLGA R++GN EL AA+ +F ++P++
Sbjct: 552 MVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPEN 611
Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
G Y+LLSN+YA +G+W + K+R M+ + KK PG SW++ +++ F V D
Sbjct: 612 SGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGD 665
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 315 bits (808), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 154/403 (38%), Positives = 252/403 (62%), Gaps = 2/403 (0%)
Query: 14 LFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73
+F + K++VS+N ++A +AQ+ + AL++VREM + P+S TL++VLP +
Sbjct: 198 VFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVD 257
Query: 74 LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF-RDEVSYNILIVG 132
+ GKEIH +IRKG++ D+++ ++L DMYAK + ++ VF+ + RD +S+N L+ G
Sbjct: 258 VIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAG 317
Query: 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192
Y Q +E+L LF +M +K V+F I ACA+LA + GK++HG +R ++
Sbjct: 318 YVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSN 377
Query: 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRE 252
+F+A++++D Y++ G I A KIFD + V D SW +I+G+ + G A++LFE M+
Sbjct: 378 IFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKR 437
Query: 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM-HYACMVDLLGRAGLME 311
GV + V+++A+LTACSH GLV++ YF+ M E+ HYA + DLLGRAG +E
Sbjct: 438 QGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLE 497
Query: 312 DAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371
+A I + VEP ++W LL +C ++ N+EL AE +F + ++ G Y+L+ NMYA
Sbjct: 498 EAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYA 557
Query: 372 EAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
G+W E +K+R M+ + +K P CSW++ +++ FV DR
Sbjct: 558 SNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDR 600
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 313 bits (803), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 154/411 (37%), Positives = 245/411 (59%), Gaps = 3/411 (0%)
Query: 10 EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
+A LF + EK+ VSW AM+ AQN L +A++ REM + + +VLPAC
Sbjct: 223 DALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACG 281
Query: 70 RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
+ GK+IHA IIR +++ +AL DMY KC CL+ A+ VF+ + ++ VS+
Sbjct: 282 GLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTA 341
Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
++VGY QT E++ +F +M+ G+ D + AISACAN++++++G + HG I
Sbjct: 342 MVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSG 401
Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
L ++ V+NS++ Y + G ID + ++F+ + V+D+ SW ++ Y G I LF+
Sbjct: 402 LIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFD 461
Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRA 307
M + G+ D V+ +++ACS GLVEKG++YF M ++ + P+ HY+CM+DL R+
Sbjct: 462 KMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRS 521
Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367
G +E+A++ I +P PDA W LL ACR GN+E+G WAAE L L P H Y LLS
Sbjct: 522 GRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLS 581
Query: 368 NMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTF 418
++YA GKWD +++R M+ + KK PG SW++ + ++ F +D +
Sbjct: 582 SIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPY 632
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 307 bits (786), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 166/431 (38%), Positives = 252/431 (58%), Gaps = 18/431 (4%)
Query: 2 YAKSSRPAEASYLFHNIAEKNI----VSWNAMVANFAQNRLELKALQLVREMPIHNEFPN 57
Y++ R +A LF + E+ I V+W+A ++ +AQ L +AL + R+M PN
Sbjct: 305 YSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPN 364
Query: 58 SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNF-------DLFLTNALTDMYAKCGCLN 110
VTL +VL CA L GKEIH I+ ++ + + N L DMYAKC ++
Sbjct: 365 EVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVD 424
Query: 111 LAQNVFNI---SFRDEVSYNILIVGYSQTSDCSESLSLFSEM--RLLGMKHDVVSFMGAI 165
A+ +F+ RD V++ ++I GYSQ D +++L L SEM + + + A+
Sbjct: 425 TARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCAL 484
Query: 166 SACANLAAIKQGKEIHGVTIRKHLH-THLFVANSILDFYTRSGRIDLANKIFDCLPVKDS 224
ACA+LAA++ GK+IH +R + LFV+N ++D Y + G I A +FD + K+
Sbjct: 485 VACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNE 544
Query: 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284
+W +L+ GYGM G + A+ +F+ MR G D V+ + +L ACSH G++++G +YF+
Sbjct: 545 VTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNR 604
Query: 285 MQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVE 343
M+ V P HYAC+VDLLGRAG + A++LI+ +P+EP +W A L CRI+G VE
Sbjct: 605 MKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVE 664
Query: 344 LGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTR 403
LG +AAE + L H G Y LLSN+YA AG+W + +++R LM+ + KK PGCSWV+
Sbjct: 665 LGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGI 724
Query: 404 DEVQDFVVNDR 414
F V D+
Sbjct: 725 KGTTTFFVGDK 735
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 307 bits (786), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 153/414 (36%), Positives = 245/414 (59%), Gaps = 1/414 (0%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MYAK EA +F + +++ V+W +++ ++Q+ AL +M PN T
Sbjct: 104 MYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFT 163
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
L++V+ A A G ++H ++ G + ++ + +AL D+Y + G ++ AQ VF+ +
Sbjct: 164 LSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALE 223
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
R++VS+N LI G+++ S ++L LF M G + S+ AC++ ++QGK
Sbjct: 224 SRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKW 283
Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
+H I+ F N++LD Y +SG I A KIFD L +D SWN+L+ Y G
Sbjct: 284 VHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGF 343
Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
A+ FE MR G+ + +S++++LTACSH GL+++G Y++ M+ D + P HY
Sbjct: 344 GKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVT 403
Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
+VDLLGRAG + A++ I+ +P+EP A IW ALL ACR++ N ELGA+AAEH+F L P
Sbjct: 404 VVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDD 463
Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
G +++L N+YA G+W++A++VR+ MK KK P CSWV+ + + FV ND
Sbjct: 464 PGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVAND 517
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 307 bits (786), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 156/416 (37%), Positives = 250/416 (60%), Gaps = 3/416 (0%)
Query: 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
YAK + A +FH I K + SWNA++ AQ+ +L +M I P+S T+
Sbjct: 440 YAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTV 499
Query: 62 TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
++L AC++ LR GKE+H IIR L DLF+ ++ +Y CG L Q +F+ +
Sbjct: 500 CSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMED 559
Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
+ VS+N +I GY Q +L +F +M L G++ +S M AC+ L +++ G+E
Sbjct: 560 KSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREA 619
Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
H ++ L F+A S++D Y ++G I ++K+F+ L K +ASWN +I+GYG+ G
Sbjct: 620 HAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLA 679
Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
AI LFE M+ G D ++++ +LTAC+H GL+ +G +Y D+M++ +KP HYAC
Sbjct: 680 KEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYAC 739
Query: 300 MVDLLGRAGLMEDAVKLI-KNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
++D+LGRAG ++ A++++ + + E D IW +LL +CRI+ N+E+G A LF L+P+
Sbjct: 740 VIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPE 799
Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
Y+LLSN+YA GKW++ KVR+ M +K+ GCSW++ +V FVV +R
Sbjct: 800 KPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGER 855
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 306 bits (785), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 159/454 (35%), Positives = 251/454 (55%), Gaps = 40/454 (8%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MY+K +A +F + ++N+VSWN+++ F QN ++AL + + M P+ VT
Sbjct: 196 MYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVT 255
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLAQNVFN-- 117
L +V+ ACA ++ G+E+H R+++ L D+ L+NA DMYAKC + A+ +F+
Sbjct: 256 LASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSM 315
Query: 118 ------------------------------ISFRDEVSYNILIVGYSQTSDCSESLSLFS 147
++ R+ VS+N LI GY+Q + E+LSLF
Sbjct: 316 PIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFC 375
Query: 148 EMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH------GVTIRKHLHTHLFVANSILD 201
++ + SF + ACA+LA + G + H G + +FV NS++D
Sbjct: 376 LLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLID 435
Query: 202 FYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261
Y + G ++ +F + +D SWN +I+G+ G + A+ LF M E G D ++
Sbjct: 436 MYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHIT 495
Query: 262 YIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320
I +L+AC H G VE+G+ YF M D V P HY CMVDLLGRAG +E+A +I+ +
Sbjct: 496 MIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEM 555
Query: 321 PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEAS 380
P++PD+ IWG+LL AC+++ N+ LG + AE L ++P + G Y+LLSNMYAE GKW++
Sbjct: 556 PMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVM 615
Query: 381 KVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
VR+ M+ K PGCSW++ + F+V D+
Sbjct: 616 NVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDK 649
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 301 bits (772), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 155/428 (36%), Positives = 256/428 (59%), Gaps = 15/428 (3%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIH-NEFPNSV 59
MY + +F + ++ I WNAM+A ++QN + +AL L M NS
Sbjct: 347 MYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANST 406
Query: 60 TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NI 118
T+ V+PAC R + IH ++++GL+ D F+ N L DMY++ G +++A +F +
Sbjct: 407 TMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKM 466
Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL-----------GMKHDVVSFMGAISA 167
RD V++N +I GY + ++L L +M+ L +K + ++ M + +
Sbjct: 467 EDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPS 526
Query: 168 CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASW 227
CA L+A+ +GKEIH I+ +L T + V ++++D Y + G + ++ K+FD +P K+ +W
Sbjct: 527 CAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITW 586
Query: 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287
N +I+ YGM G AI+L M GV + V++I++ ACSH G+V++G + F M+
Sbjct: 587 NVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKP 646
Query: 288 D-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPD-ANIWGALLGACRIYGNVELG 345
D V+P+ HYAC+VDLLGRAG +++A +L+ +P + + A W +LLGA RI+ N+E+G
Sbjct: 647 DYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIG 706
Query: 346 AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDE 405
AA++L L+P +Y+LL+N+Y+ AG WD+A++VR MK + +K PGCSW++ DE
Sbjct: 707 EIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDE 766
Query: 406 VQDFVVND 413
V FV D
Sbjct: 767 VHKFVAGD 774
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 301 bits (770), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 149/418 (35%), Positives = 262/418 (62%), Gaps = 4/418 (0%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
+YA+ R + +F + ++++SWN+++ + N L+A+ L +EM + P+ +T
Sbjct: 291 LYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLT 350
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNF-DLFLTNALTDMYAKCGCLNLAQNVFN-I 118
L ++ ++ +R + + +RKG D+ + NA+ MYAK G ++ A+ VFN +
Sbjct: 351 LISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWL 410
Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQG 177
D +S+N +I GY+Q SE++ +++ M G + + +++ + AC+ A++QG
Sbjct: 411 PNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQG 470
Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
++HG ++ L+ +FV S+ D Y + GR++ A +F +P +S WNTLI +G
Sbjct: 471 MKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFH 530
Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
G + A+ LF+ M ++GV D ++++ +L+ACSH GLV++G+ F+ MQ D + P+ H
Sbjct: 531 GHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKH 590
Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
Y CMVD+ GRAG +E A+K IK++ ++PDA+IWGALL ACR++GNV+LG A+EHLF ++
Sbjct: 591 YGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVE 650
Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
P+H GY++LLSNMYA AGKW+ ++R + + +K PG S ++ ++V+ F ++
Sbjct: 651 PEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQ 708
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 423 | ||||||
| 224103989 | 680 | predicted protein [Populus trichocarpa] | 0.869 | 0.541 | 0.739 | 0.0 | |
| 356519887 | 813 | PREDICTED: pentatricopeptide repeat-cont | 0.978 | 0.509 | 0.715 | 1e-179 | |
| 297742828 | 638 | unnamed protein product [Vitis vinifera] | 0.881 | 0.584 | 0.707 | 1e-178 | |
| 449524410 | 684 | PREDICTED: pentatricopeptide repeat-cont | 0.988 | 0.611 | 0.693 | 1e-176 | |
| 449445027 | 833 | PREDICTED: pentatricopeptide repeat-cont | 0.988 | 0.501 | 0.693 | 1e-176 | |
| 77554180 | 780 | pentatricopeptide, putative, expressed [ | 0.976 | 0.529 | 0.578 | 1e-143 | |
| 125579001 | 601 | hypothetical protein OsJ_35746 [Oryza sa | 0.976 | 0.687 | 0.578 | 1e-143 | |
| 242091211 | 771 | hypothetical protein SORBIDRAFT_09g02670 | 0.952 | 0.522 | 0.578 | 1e-143 | |
| 147773389 | 672 | hypothetical protein VITISV_010383 [Viti | 0.888 | 0.559 | 0.617 | 1e-142 | |
| 413946224 | 778 | hypothetical protein ZEAMMB73_227843 [Ze | 0.952 | 0.517 | 0.573 | 1e-142 |
| >gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa] gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/415 (73%), Positives = 359/415 (86%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MYAKS R +AS +F+ I EKNIVSWNAMVANFAQNRLEL A+ LVR+M E PNSVT
Sbjct: 254 MYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNSVT 313
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
TNVLPACAR FLRPGKEIHAR IR G + DLF++NALTDMYAKCGCLNLA+ VF IS
Sbjct: 314 FTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVFKISL 373
Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
RDEVSYNILI+GYSQT++CSESL LF EM + GMK DVVS+MG ISACANLAA+KQGKE+
Sbjct: 374 RDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISACANLAALKQGKEV 433
Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
HG+ +RKHLHTHLF+AN++LDFY + GRIDLA K+F +P +D+ASWN++ILGYGMLGE+
Sbjct: 434 HGLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIPSRDTASWNSMILGYGMLGEL 493
Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
AINLFEAM+EDGV YD VSYIA+L+ACSHGGLVE+GKKYF+ MQ ++KPT+MHYACM
Sbjct: 494 TIAINLFEAMKEDGVEYDSVSYIAVLSACSHGGLVEEGKKYFEHMQVQNIKPTQMHYACM 553
Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360
VDLLGRAGL+E+AVKLI++LP+EPDAN+WGALLGACRI+G +EL WAAEHLF LKPQH
Sbjct: 554 VDLLGRAGLIEEAVKLIESLPIEPDANVWGALLGACRIHGYIELAHWAAEHLFKLKPQHS 613
Query: 361 GYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
GYY +LSNMYAEAGKWDEA++VR+LMKSR AKKNPGCSWVQ ++V FV +RM
Sbjct: 614 GYYSVLSNMYAEAGKWDEANQVRKLMKSRGAKKNPGCSWVQIDNQVHAFVAGERM 668
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 299/418 (71%), Positives = 350/418 (83%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MYAKS AS +F+ + +NIVSWNAM+ANFA+NRLE +A++LVR+M E PN+VT
Sbjct: 386 MYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVT 445
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
TNVLPACAR FL GKEIHARIIR G + DLF++NALTDMY+KCGCLNLAQNVFNIS
Sbjct: 446 FTNVLPACARLGFLNVGKEIHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFNISV 505
Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
RDEVSYNILI+GYS+T+D ESL LFSEMRLLGM+ D+VSFMG +SACANLA I+QGKEI
Sbjct: 506 RDEVSYNILIIGYSRTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQGKEI 565
Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
HG+ +RK HTHLFVANS+LD YTR GRIDLA K+F C+ KD ASWNT+ILGYGM GE+
Sbjct: 566 HGLLVRKLFHTHLFVANSLLDLYTRCGRIDLATKVFYCIQNKDVASWNTMILGYGMRGEL 625
Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
DTAINLFEAM+EDGV YD VS++A+L+ACSHGGL+EKG+KYF M +++PT HYACM
Sbjct: 626 DTAINLFEAMKEDGVEYDSVSFVAVLSACSHGGLIEKGRKYFKMMCDLNIEPTHTHYACM 685
Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360
VDLLGRAGLME+A LI+ L + PD NIWGALLGACRI+GN+ELG WAAEHLF LKPQHC
Sbjct: 686 VDLLGRAGLMEEAADLIRGLSIIPDTNIWGALLGACRIHGNIELGLWAAEHLFELKPQHC 745
Query: 361 GYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTF 418
GYYILLSNMYAEA +WDEA+KVRELMKSR AKKNPGCSWVQ D V F+V +++ +
Sbjct: 746 GYYILLSNMYAEAERWDEANKVRELMKSRGAKKNPGCSWVQVGDLVHAFLVGEKIDSL 803
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust.
Identities = 298/421 (70%), Positives = 350/421 (83%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MYAKS EAS +F+ + KN+VSWNAM+ANFAQNR EL A+ LVR+M + E PNSVT
Sbjct: 187 MYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVT 246
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
TNVLPACAR +RPGKEIHAR I G FDLF++NALTDMYAK G L LA+NVF+ S
Sbjct: 247 FTNVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSNALTDMYAKSGHLKLARNVFDTSL 306
Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
RDEVSYNILIVG+SQTSDCSESLSLFSEM+L+G+K D VSFMGA+SACANL AIKQGKEI
Sbjct: 307 RDEVSYNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEI 366
Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
HG +RK H HLFVANS+LDFYT+ GRI LA IFD + KD ASWNT+ILGYGMLGE+
Sbjct: 367 HGFLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFDRMTNKDVASWNTMILGYGMLGEL 426
Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
DTAI+LFE MR+D V YD VS+IA+L+ACSHGGL+EKG+KYFDE++A ++PT+MHYACM
Sbjct: 427 DTAIDLFENMRKDDVEYDSVSFIAVLSACSHGGLLEKGRKYFDELKARGIEPTQMHYACM 486
Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360
VDLLGRAGLME+A +LIK LP+ PDANIWGALLGACRIYGN+EL AWAAEHLF LKP+H
Sbjct: 487 VDLLGRAGLMEEAAELIKGLPIVPDANIWGALLGACRIYGNLELAAWAAEHLFELKPEHS 546
Query: 361 GYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFTP 420
GYY LLSNMYAE G+WDEA+++RELMKSR KK+PGCSWVQ ++ FVV ++++
Sbjct: 547 GYYTLLSNMYAETGRWDEANRIRELMKSRGVKKSPGCSWVQIGEQAHAFVVGEKIEGLDL 606
Query: 421 G 421
G
Sbjct: 607 G 607
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust.
Identities = 292/421 (69%), Positives = 352/421 (83%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MYAKS EAS +FHN+ +NIVSWNAM+AN+A NRL L+A++ V +M E PN+VT
Sbjct: 257 MYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVT 316
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
TNVLPACAR FL PGKEIHA +R GL DLF++N+L DMYAKCGCL+ A+NVFN S
Sbjct: 317 FTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTSR 376
Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
+DEVSYNILI+GYS+T DC +SL+LFSEMRLLG K DVVSF+G ISACANLAA+KQGKE+
Sbjct: 377 KDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEV 436
Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
HGV +R HL++HLFV+NS+LDFYT+ GRID+A ++F+ + KD ASWNT+ILGYGM+GE+
Sbjct: 437 HGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGEL 496
Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
+TAI++FEAMR+D V YD VSYIA+L+ACSHGGLVE+G +YF EM A ++PTEMHY CM
Sbjct: 497 ETAISMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQRLEPTEMHYTCM 556
Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360
VDLLGRAG +E+A KLI+ LP+ PDANIWGALLGACRIYGNVELG AAEHLF LKPQHC
Sbjct: 557 VDLLGRAGFVEEAAKLIQQLPIAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHC 616
Query: 361 GYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFTP 420
GYYILLSN+YAE G+WDEA+K+RELMKSR AKKNPGCSWVQ D+V FV +R++ F
Sbjct: 617 GYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQIYDQVHAFVAEERVEGFEL 676
Query: 421 G 421
G
Sbjct: 677 G 677
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust.
Identities = 292/421 (69%), Positives = 352/421 (83%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MYAKS EAS +FHN+ +NIVSWNAM+AN+A NRL L+A++ V +M E PN+VT
Sbjct: 406 MYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVT 465
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
TNVLPACAR FL PGKEIHA +R GL DLF++N+L DMYAKCGCL+ A+NVFN S
Sbjct: 466 FTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTSR 525
Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
+DEVSYNILI+GYS+T DC +SL+LFSEMRLLG K DVVSF+G ISACANLAA+KQGKE+
Sbjct: 526 KDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEV 585
Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
HGV +R HL++HLFV+NS+LDFYT+ GRID+A ++F+ + KD ASWNT+ILGYGM+GE+
Sbjct: 586 HGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGEL 645
Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
+TAI++FEAMR+D V YD VSYIA+L+ACSHGGLVE+G +YF EM A ++PTEMHY CM
Sbjct: 646 ETAISMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQRLEPTEMHYTCM 705
Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360
VDLLGRAG +E+A KLI+ LP+ PDANIWGALLGACRIYGNVELG AAEHLF LKPQHC
Sbjct: 706 VDLLGRAGFVEEAAKLIQQLPIAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHC 765
Query: 361 GYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTFTP 420
GYYILLSN+YAE G+WDEA+K+RELMKSR AKKNPGCSWVQ D+V FV +R++ F
Sbjct: 766 GYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQIYDQVHAFVAEERVEGFEL 825
Query: 421 G 421
G
Sbjct: 826 G 826
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|77554180|gb|ABA96976.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 240/415 (57%), Positives = 317/415 (76%), Gaps = 2/415 (0%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MYAK +AS +F + ++N+VSWNAM+AN QN E +A +LV +M E PNS+T
Sbjct: 365 MYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSIT 424
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
L NVLPACAR L+ GK+IHA IR+GL FDLF++NAL DMY+KCG L+LA+N+F S
Sbjct: 425 LVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFERSE 484
Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
+D+VSYN LI+GYSQ+ C ESL LF +MR +G+ +D VSFMGA+SAC NL+ K GKEI
Sbjct: 485 KDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEI 544
Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
H V +R+ L H F++NS+LD YT+ G + A+KIF+ + KD ASWNT+ILGYGM G++
Sbjct: 545 HCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQI 604
Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
D A LFE M+ DG+ YD VSYIA+L ACSHGGLV+KGKKYF +M A +++P +MHYACM
Sbjct: 605 DIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQNIEPQQMHYACM 664
Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360
VDLLGRAG + ++I+++P ++++WGALLGACRI+GN+EL WAAEHLF LKP+H
Sbjct: 665 VDLLGRAGQLSKCAEIIRDMPFPANSDVWGALLGACRIHGNIELAQWAAEHLFELKPEHS 724
Query: 361 GYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRD--EVQDFVVND 413
GYY L+ NMYAE G+W+EA+K+R+LMKSR+ +KNP SWVQ +D ++Q F+V D
Sbjct: 725 GYYTLMINMYAETGRWNEANKIRKLMKSRKVQKNPAYSWVQDQDGNKLQAFLVGD 779
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125579001|gb|EAZ20147.1| hypothetical protein OsJ_35746 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 240/415 (57%), Positives = 317/415 (76%), Gaps = 2/415 (0%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MYAK +AS +F + ++N+VSWNAM+AN QN E +A +LV +M E PNS+T
Sbjct: 186 MYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSIT 245
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
L NVLPACAR L+ GK+IHA IR+GL FDLF++NAL DMY+KCG L+LA+N+F S
Sbjct: 246 LVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFERSE 305
Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
+D+VSYN LI+GYSQ+ C ESL LF +MR +G+ +D VSFMGA+SAC NL+ K GKEI
Sbjct: 306 KDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEI 365
Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
H V +R+ L H F++NS+LD YT+ G + A+KIF+ + KD ASWNT+ILGYGM G++
Sbjct: 366 HCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQI 425
Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
D A LFE M+ DG+ YD VSYIA+L ACSHGGLV+KGKKYF +M A +++P +MHYACM
Sbjct: 426 DIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQNIEPQQMHYACM 485
Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360
VDLLGRAG + ++I+++P ++++WGALLGACRI+GN+EL WAAEHLF LKP+H
Sbjct: 486 VDLLGRAGQLSKCAEIIRDMPFPANSDVWGALLGACRIHGNIELAQWAAEHLFELKPEHS 545
Query: 361 GYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRD--EVQDFVVND 413
GYY L+ NMYAE G+W+EA+K+R+LMKSR+ +KNP SWVQ +D ++Q F+V D
Sbjct: 546 GYYTLMINMYAETGRWNEANKIRKLMKSRKVQKNPAYSWVQDQDGNKLQAFLVGD 600
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242091211|ref|XP_002441438.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor] gi|241946723|gb|EES19868.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 239/413 (57%), Positives = 322/413 (77%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MYAK +AS +F NI +N+VSWNAM+AN AQN E +A LV EM + E PNS T
Sbjct: 358 MYAKFGCLEKASAIFENIEGRNVVSWNAMIANLAQNGAETEAFSLVIEMQKNGECPNSFT 417
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
L N+LPAC+R ++ GK+IHA I + L DLF++NAL D+YAKCG L++AQ++F+ S
Sbjct: 418 LVNLLPACSRVASVKMGKQIHAWSIHRSLMSDLFVSNALIDVYAKCGQLSVAQDIFDRSE 477
Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
+D+VSYN LIVGYSQ+ C ESL LF +MR G+++D VSFMG +SACANL+A KQGKEI
Sbjct: 478 KDDVSYNTLIVGYSQSQCCFESLHLFQQMRSAGIEYDAVSFMGCLSACANLSAFKQGKEI 537
Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
HGV +R+ L+TH F+ANS+LD YT+ G + A+KIF+ + KD ASWNT+ILGYGM G++
Sbjct: 538 HGVLVRRLLNTHPFLANSLLDLYTKGGMLATASKIFNRITRKDVASWNTMILGYGMHGQI 597
Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
D A LF+ M++DGV YD VSYIA+L+ACSHGGLV++GKKYF +M A ++KP +MHYACM
Sbjct: 598 DVAFELFDLMKDDGVDYDHVSYIAVLSACSHGGLVDRGKKYFSQMIAQNIKPQQMHYACM 657
Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360
VDLLGRAG + ++V++I N+P ++++WGALLG+CRI+G++EL AAEHLF LKP+H
Sbjct: 658 VDLLGRAGQLSESVEIITNMPFPANSDVWGALLGSCRIHGDIELARLAAEHLFELKPEHS 717
Query: 361 GYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
GYY LL NMY+E+G W+EA++++ LMKSR+ +KNP SWVQ+ +++Q F+V D
Sbjct: 718 GYYTLLRNMYSESGMWNEANEIKTLMKSRKVQKNPAYSWVQSGNKLQAFLVGD 770
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147773389|emb|CAN64573.1| hypothetical protein VITISV_010383 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 261/423 (61%), Positives = 306/423 (72%), Gaps = 47/423 (11%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MYAKS EAS +F+ + KN+VSWNAM+ANFAQNR EL A+ LVR+M + E PNSVT
Sbjct: 288 MYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVT 347
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
TNVLPACAR +RPGKEIHAR I G FDLF++NALTDMYAK G L LA+NVF+ S
Sbjct: 348 FTNVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSNALTDMYAKSGHLKLARNVFDTSL 407
Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
RDEVSYNILIVG SQTSDCSESLSLFSEM+L+G+K D VSFMGA+SACANL AIKQGKEI
Sbjct: 408 RDEVSYNILIVGXSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEI 467
Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
HG +RK H HLFVANS+LDFYT+ GRI LA IFD + KD ASWNT+ILGYGMLGE+
Sbjct: 468 HGFLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFDRMTNKDVASWNTMILGYGMLGEL 527
Query: 241 DTAINLF-EAMREDGV-GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
DTAI+L E MR+D V D VS+IA+L+ACSH
Sbjct: 528 DTAIDLLTENMRKDDVESDDSVSFIAVLSACSH--------------------------- 560
Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
GRAGLME+A +LIK LP+ PDANIWGALLGACRIYGN+EL AWAAEHLF LKP+
Sbjct: 561 ------GRAGLMEEAAELIKGLPIVPDANIWGALLGACRIYGNLELAAWAAEHLFELKPE 614
Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTF 418
H + G+WDEA+++RELMKSR KK+PGCSWVQ ++ FVV ++++
Sbjct: 615 H------------KTGRWDEANRIRELMKSRGVKKSPGCSWVQIGEQAHAFVVGEKIEGL 662
Query: 419 TPG 421
G
Sbjct: 663 DLG 665
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413946224|gb|AFW78873.1| hypothetical protein ZEAMMB73_227843 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 237/413 (57%), Positives = 321/413 (77%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MYAK +AS +F NI +N+VSWNAM+AN QN E +A +LV EM + E PNS T
Sbjct: 365 MYAKFGCSEKASAIFENIEVRNVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFT 424
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF 120
L N+LPAC+R ++ GK+IHA IR+ L DLF++NAL D+YAKCG LNLA+ +F+ S
Sbjct: 425 LVNLLPACSRVASVKMGKQIHAWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFDRSE 484
Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
+D VSYN LIVGYSQ+ C ESL LF +MRL G++HD VSFMG +SAC+NL+A KQGKEI
Sbjct: 485 KDGVSYNTLIVGYSQSQCCFESLHLFQQMRLAGIEHDAVSFMGCLSACSNLSAFKQGKEI 544
Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
HGV +++ L +H F+ANS+LD YT+ G +D A+KIF+ + KD ASWNT+ILGYGM G++
Sbjct: 545 HGVLVKRLLDSHPFLANSLLDVYTKGGMLDTASKIFNRITQKDVASWNTMILGYGMHGQI 604
Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300
D A LF+ M++DG+ YD VSYIA+L+ CSHGGLV++GKKYF +M A ++KP +MHYACM
Sbjct: 605 DVAFELFDLMKDDGIEYDHVSYIAVLSVCSHGGLVDRGKKYFSQMIAQNIKPQQMHYACM 664
Query: 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360
VDLLGRAG + ++ ++I+N+P ++++WGALLG+CRI+G++EL AAEHLF LKP++
Sbjct: 665 VDLLGRAGQLSESAEIIRNMPFRANSDVWGALLGSCRIHGDIELARLAAEHLFELKPENS 724
Query: 361 GYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
GYY LL NMY+E+G W+EA+ V++LMKSR+ +KNP SWVQ+ +++Q F+V D
Sbjct: 725 GYYTLLRNMYSESGMWNEANGVKKLMKSRKVQKNPAYSWVQSGNKLQAFLVGD 777
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 423 | ||||||
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.971 | 0.471 | 0.409 | 3e-85 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.955 | 0.517 | 0.403 | 5.2e-81 | |
| TAIR|locus:2205425 | 743 | AT1G68930 "AT1G68930" [Arabido | 0.964 | 0.549 | 0.374 | 6.5e-81 | |
| TAIR|locus:505006130 | 970 | AT1G18485 [Arabidopsis thalian | 0.973 | 0.424 | 0.376 | 3.8e-78 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.973 | 0.556 | 0.377 | 2.7e-77 | |
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.978 | 0.503 | 0.356 | 1.1e-76 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.973 | 0.462 | 0.368 | 3.9e-76 | |
| TAIR|locus:2148101 | 850 | AT5G16860 "AT5G16860" [Arabido | 0.929 | 0.462 | 0.400 | 1e-75 | |
| TAIR|locus:2196583 | 866 | ECB2 "EARLY CHLOROPLAST BIOGEN | 0.973 | 0.475 | 0.373 | 1.3e-75 | |
| TAIR|locus:2038603 | 868 | AT2G27610 "AT2G27610" [Arabido | 0.966 | 0.471 | 0.371 | 2.1e-75 |
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 853 (305.3 bits), Expect = 3.0e-85, P = 3.0e-85
Identities = 171/418 (40%), Positives = 265/418 (63%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MY+K A +F ++++++VS+ +M+A +A+ L +A++L EM P+ T
Sbjct: 340 MYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYT 399
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
+T VL CAR L GK +H I L FD+F++NAL DMYAKCG + A+ VF+ +
Sbjct: 400 VTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMR 459
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH---DVVSFMGAISACANLAAIKQ 176
+D +S+N +I GYS+ +E+LSLF+ LL K D + + ACA+L+A +
Sbjct: 460 VKDIISWNTIIGGYSKNCYANEALSLFN--LLLEEKRFSPDERTVACVLPACASLSAFDK 517
Query: 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM 236
G+EIHG +R + VANS++D Y + G + LA+ +FD + KD SW +I GYGM
Sbjct: 518 GREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGM 577
Query: 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEM 295
G AI LF MR+ G+ D +S++++L ACSH GLV++G ++F+ M+ + ++PT
Sbjct: 578 HGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVE 637
Query: 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355
HYAC+VD+L R G + A + I+N+P+ PDA IWGALL CRI+ +V+L AE +F L
Sbjct: 638 HYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFEL 697
Query: 356 KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
+P++ GYY+L++N+YAEA KW++ ++R+ + R +KNPGCSW++ + V FV D
Sbjct: 698 EPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGD 755
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
Identities = 167/414 (40%), Positives = 254/414 (61%)
Query: 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
YA+S + EA LF +++ +W AMV+ + QNR+ +A +L +MP NE V+
Sbjct: 260 YAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNE----VSW 315
Query: 62 TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
+L +G + KE+ + N + N + YA+CG ++ A+N+F+ +
Sbjct: 316 NAMLAGYVQGERMEMAKELFD--VMPCRNVSTW--NTMITGYAQCGKISEAKNLFDKMPK 371
Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
RD VS+ +I GYSQ+ E+L LF +M G + + SF A+S CA++ A++ GK++
Sbjct: 372 RDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQL 431
Query: 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEV 240
HG ++ T FV N++L Y + G I+ AN +F + KD SWNT+I GY G
Sbjct: 432 HGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFG 491
Query: 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYAC 299
+ A+ FE+M+ +G+ D + +A+L+ACSH GLV+KG++YF M D V P HYAC
Sbjct: 492 EVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYAC 551
Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
MVDLLGRAGL+EDA L+KN+P EPDA IWG LLGA R++GN EL AA+ +F ++P++
Sbjct: 552 MVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPEN 611
Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413
G Y+LLSN+YA +G+W + K+R M+ + KK PG SW++ +++ F V D
Sbjct: 612 SGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGD 665
|
|
| TAIR|locus:2205425 AT1G68930 "AT1G68930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 785 (281.4 bits), Expect = 6.5e-81, Sum P(2) = 6.5e-81
Identities = 154/411 (37%), Positives = 245/411 (59%)
Query: 10 EASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA 69
+A LF + EK+ VSW AM+ AQN L +A++ REM + + +VLPAC
Sbjct: 223 DALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACG 281
Query: 70 RGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRDEVSYNI 128
+ GK+IHA IIR +++ +AL DMY KC CL+ A+ VF+ + ++ VS+
Sbjct: 282 GLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTA 341
Query: 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188
++VGY QT E++ +F +M+ G+ D + AISACAN++++++G + HG I
Sbjct: 342 MVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSG 401
Query: 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
L ++ V+NS++ Y + G ID + ++F+ + V+D+ SW ++ Y G I LF+
Sbjct: 402 LIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFD 461
Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRA 307
M + G+ D V+ +++ACS GLVEKG++YF M ++ + P+ HY+CM+DL R+
Sbjct: 462 KMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRS 521
Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367
G +E+A++ I +P PDA W LL ACR GN+E+G WAAE L L P H Y LLS
Sbjct: 522 GRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLS 581
Query: 368 NMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRMKTF 418
++YA GKWD +++R M+ + KK PG SW++ + ++ F +D +
Sbjct: 582 SIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPY 632
|
|
| TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
Identities = 157/417 (37%), Positives = 251/417 (60%)
Query: 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
YAK + A +FH I K + SWNA++ AQ+ +L +M I P+S T+
Sbjct: 440 YAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTV 499
Query: 62 TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR 121
++L AC++ LR GKE+H IIR L DLF+ ++ +Y CG L Q +F+ +
Sbjct: 500 CSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFD-AME 558
Query: 122 DE--VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
D+ VS+N +I GY Q +L +F +M L G++ +S M AC+ L +++ G+E
Sbjct: 559 DKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGRE 618
Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
H ++ L F+A S++D Y ++G I ++K+F+ L K +ASWN +I+GYG+ G
Sbjct: 619 AHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGL 678
Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
AI LFE M+ G D ++++ +LTAC+H GL+ +G +Y D+M++ +KP HYA
Sbjct: 679 AKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYA 738
Query: 299 CMVDLLGRAGLMEDAVKLI-KNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
C++D+LGRAG ++ A++++ + + E D IW +LL +CRI+ N+E+G A LF L+P
Sbjct: 739 CVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEP 798
Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
+ Y+LLSN+YA GKW++ KVR+ M +K+ GCSW++ +V FVV +R
Sbjct: 799 EKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGER 855
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
Identities = 158/418 (37%), Positives = 254/418 (60%)
Query: 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL 61
YA A LF I K++VSWNAM++ +A+ +AL+L ++M N P+ T+
Sbjct: 210 YASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTM 269
Query: 62 TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISF 120
V+ ACA+ + G+++H I G +L + NAL D+Y+KCG L A +F + +
Sbjct: 270 VTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPY 329
Query: 121 RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180
+D +S+N LI GY+ + E+L LF EM G + V+ + + ACA+L AI G+ I
Sbjct: 330 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWI 389
Query: 181 HGVTIRKHLH--THLF-VANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
H V I K L T+ + S++D Y + G I+ A+++F+ + K +SWN +I G+ M
Sbjct: 390 H-VYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMH 448
Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
G D + +LF MR+ G+ D ++++ +L+ACSH G+++ G+ F M D + P H
Sbjct: 449 GRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEH 508
Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
Y CM+DLLG +GL ++A ++I + +EPD IW +LL AC+++GNVELG AE+L ++
Sbjct: 509 YGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIE 568
Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
P++ G Y+LLSN+YA AG+W+E +K R L+ + KK PGCS ++ V +F++ D+
Sbjct: 569 PENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDK 626
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| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
Identities = 149/418 (35%), Positives = 262/418 (62%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
+YA+ R + +F + ++++SWN+++ + N L+A+ L +EM + P+ +T
Sbjct: 291 LYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLT 350
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNF-DLFLTNALTDMYAKCGCLNLAQNVFN-I 118
L ++ ++ +R + + +RKG D+ + NA+ MYAK G ++ A+ VFN +
Sbjct: 351 LISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWL 410
Query: 119 SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISACANLAAIKQG 177
D +S+N +I GY+Q SE++ +++ M G + + +++ + AC+ A++QG
Sbjct: 411 PNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQG 470
Query: 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237
++HG ++ L+ +FV S+ D Y + GR++ A +F +P +S WNTLI +G
Sbjct: 471 MKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFH 530
Query: 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMH 296
G + A+ LF+ M ++GV D ++++ +L+ACSH GLV++G+ F+ MQ D + P+ H
Sbjct: 531 GHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKH 590
Query: 297 YACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356
Y CMVD+ GRAG +E A+K IK++ ++PDA+IWGALL ACR++GNV+LG A+EHLF ++
Sbjct: 591 YGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVE 650
Query: 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
P+H GY++LLSNMYA AGKW+ ++R + + +K PG S ++ ++V+ F ++
Sbjct: 651 PEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQ 708
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| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
Identities = 158/429 (36%), Positives = 259/429 (60%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIH-NEFPNSV 59
MY + +F + ++ I WNAM+A ++QN + +AL L M NS
Sbjct: 347 MYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANST 406
Query: 60 TLTNVLPACAR-GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN- 117
T+ V+PAC R G F R + IH ++++GL+ D F+ N L DMY++ G +++A +F
Sbjct: 407 TMAGVVPACVRSGAFSRK-EAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGK 465
Query: 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL-----------GMKHDVVSFMGAIS 166
+ RD V++N +I GY + ++L L +M+ L +K + ++ M +
Sbjct: 466 MEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILP 525
Query: 167 ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS 226
+CA L+A+ +GKEIH I+ +L T + V ++++D Y + G + ++ K+FD +P K+ +
Sbjct: 526 SCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVIT 585
Query: 227 WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ 286
WN +I+ YGM G AI+L M GV + V++I++ ACSH G+V++G + F M+
Sbjct: 586 WNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMK 645
Query: 287 AD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPD-ANIWGALLGACRIYGNVEL 344
D V+P+ HYAC+VDLLGRAG +++A +L+ +P + + A W +LLGA RI+ N+E+
Sbjct: 646 PDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEI 705
Query: 345 GAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRD 404
G AA++L L+P +Y+LL+N+Y+ AG WD+A++VR MK + +K PGCSW++ D
Sbjct: 706 GEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGD 765
Query: 405 EVQDFVVND 413
EV FV D
Sbjct: 766 EVHKFVAGD 774
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| TAIR|locus:2148101 AT5G16860 "AT5G16860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
Identities = 163/407 (40%), Positives = 244/407 (59%)
Query: 22 NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIH 81
++V+W+A ++ +AQ L +AL + R+M PN VTL +VL CA L GKEIH
Sbjct: 329 DVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIH 388
Query: 82 ARII------RK-GLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS--FRDEVSYNILIV 131
I RK G + + N L DMYAKC ++ A+ +F+ +S RD V++ ++I
Sbjct: 389 CYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIG 448
Query: 132 GYSQTSDCSESLSLFSEM--RLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL 189
GYSQ D +++L L SEM + + + A+ ACA+LAA++ GK+IH +R
Sbjct: 449 GYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQ 508
Query: 190 HT-HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFE 248
+ LFV+N ++D Y + G I A +FD + K+ +W +L+ GYGM G + A+ +F+
Sbjct: 509 NAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFD 568
Query: 249 AMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRA 307
MR G D V+ + +L ACSH G++++G +YF+ M+ V P HYAC+VDLLGRA
Sbjct: 569 EMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRA 628
Query: 308 GLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367
G + A++LI+ +P+EP +W A L CRI+G VELG +AAE + L H G Y LLS
Sbjct: 629 GRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLS 688
Query: 368 NMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
N+YA AG+W + +++R LM+ + KK PGCSWV+ F V D+
Sbjct: 689 NLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDK 735
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| TAIR|locus:2196583 ECB2 "EARLY CHLOROPLAST BIOGENESIS2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
Identities = 155/415 (37%), Positives = 242/415 (58%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MY + EA LF + K+IVSW M++ + N L KA+ R M + P+ +T
Sbjct: 341 MYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEIT 400
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
+ VL ACA L G E+H I+ L + + N L +MY+KC C++ A ++F NI
Sbjct: 401 VAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIP 460
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
++ +S+ +I G + C E+L +M++ ++ + ++ A++ACA + A+ GKE
Sbjct: 461 RKNVISWTSIIAGLRLNNRCFEALIFLRQMKMT-LQPNAITLTAALAACARIGALMCGKE 519
Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
IH +R + F+ N++LD Y R GR++ A F+ KD SWN L+ GY G+
Sbjct: 520 IHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNSQK-KDVTSWNILLTGYSERGQ 578
Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
+ LF+ M + V D +++I++L CS +V +G YF +M+ V P HYAC
Sbjct: 579 GSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKMEDYGVTPNLKHYAC 638
Query: 300 MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359
+VDLLGRAG +++A K I+ +PV PD +WGALL ACRI+ ++LG +A+H+F L +
Sbjct: 639 VVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKS 698
Query: 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
GYYILL N+YA+ GKW E +KVR +MK + GCSWV+ + +V F+ +D+
Sbjct: 699 VGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDK 753
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| TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
Identities = 155/417 (37%), Positives = 245/417 (58%)
Query: 2 YAKSSRPAEASYLFHNIA-EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
Y+K + +A LF I N+VSW AM++ F QN + +A+ L EM PN T
Sbjct: 340 YSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFT 399
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
+ +L A + P E+HA++++ + AL D Y K G + A VF+ I
Sbjct: 400 YSVILTALP---VISPS-EVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGID 455
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL-AAIKQGK 178
+D V+++ ++ GY+QT + ++ +F E+ G+K + +F ++ CA A++ QGK
Sbjct: 456 DKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGK 515
Query: 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
+ HG I+ L + L V++++L Y + G I+ A ++F KD SWN++I GY G
Sbjct: 516 QFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHG 575
Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
+ A+++F+ M++ V D V++I + AC+H GLVE+G+KYFD M D + PT+ H
Sbjct: 576 QAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHN 635
Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
+CMVDL RAG +E A+K+I+N+P + IW +L ACR++ ELG AAE + +KP
Sbjct: 636 SCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKP 695
Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
+ Y+LLSNMYAE+G W E +KVR+LM R KK PG SW++ +++ F+ DR
Sbjct: 696 EDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDR 752
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00090980 | hypothetical protein (680 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 423 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-115 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-98 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-46 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-32 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-28 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-16 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 355 bits (913), Expect = e-115
Identities = 174/416 (41%), Positives = 249/416 (59%), Gaps = 4/416 (0%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
MY EA +F + K+ VSW AM++ + +N L KAL+ M N P+ +T
Sbjct: 332 MYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT 391
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS 119
+ +VL ACA L G ++H RKGL + + NAL +MY+KC C++ A VF NI
Sbjct: 392 IASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP 451
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
+D +S+ +I G + C E+L F +M LL +K + V+ + A+SACA + A+ GKE
Sbjct: 452 EKDVISWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKE 510
Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
IH +R + F+ N++LD Y R GR++ A F KD SWN L+ GY G+
Sbjct: 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF-NSHEKDVVSWNILLTGYVAHGK 569
Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYA 298
A+ LF M E GV D V++I++L ACS G+V +G +YF M+ S+ P HYA
Sbjct: 570 GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629
Query: 299 CMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358
C+VDLLGRAG + +A I +P+ PD +WGALL ACRI+ +VELG AA+H+F L P
Sbjct: 630 CVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPN 689
Query: 359 HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414
GYYILL N+YA+AGKWDE ++VR+ M+ +PGCSWV+ + +V F+ +D
Sbjct: 690 SVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDE 745
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Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 307 bits (788), Expect = 5e-98
Identities = 147/418 (35%), Positives = 236/418 (56%), Gaps = 4/418 (0%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
M+ K +A LF + E+N+ SW ++ +A L REM T
Sbjct: 167 MHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRT 226
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
+L A A R G+++H +++ G+ D F++ AL DMY+KCG + A+ VF+ +
Sbjct: 227 FVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP 286
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
+ V++N ++ GY+ E+L L+ EMR G+ D +F I + LA ++ K+
Sbjct: 287 EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346
Query: 180 IHGVTIRKHLHTHLFVANSIL-DFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238
H IR + VAN+ L D Y++ GR++ A +FD +P K+ SWN LI GYG G
Sbjct: 347 AHAGLIRTGFPLDI-VANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHG 405
Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHY 297
A+ +FE M +GV + V+++A+L+AC + GL E+G + F M + +KP MHY
Sbjct: 406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY 465
Query: 298 ACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357
ACM++LLGR GL+++A +I+ P +P N+W ALL ACRI+ N+ELG AAE L+ + P
Sbjct: 466 ACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP 525
Query: 358 QHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDRM 415
+ Y++L N+Y +G+ EA+KV E +K + +P C+W++ + + F DR+
Sbjct: 526 EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRL 583
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Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 9e-46
Identities = 99/343 (28%), Positives = 172/343 (50%), Gaps = 10/343 (2%)
Query: 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVT 60
M+ + A Y+F + E+++ SWN +V +A+ +AL L M P+ T
Sbjct: 130 MFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYT 189
Query: 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-IS 119
VL C L G+E+HA ++R G D+ + NAL MY KCG + A+ VF+ +
Sbjct: 190 FPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP 249
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
RD +S+N +I GY + +C E L LF MR L + D+++ ISAC L + G+E
Sbjct: 250 RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309
Query: 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239
+HG ++ + V NS++ Y G A K+F + KD+ SW +I GY G
Sbjct: 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGL 369
Query: 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299
D A+ + M +D V D ++ ++L+AC+ G ++ G K + + + + Y
Sbjct: 370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK----LHELAERKGLISYVV 425
Query: 300 ----MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338
++++ + ++ A+++ N+P E D W +++ R+
Sbjct: 426 VANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRL 467
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 2e-32
Identities = 92/367 (25%), Positives = 170/367 (46%), Gaps = 40/367 (10%)
Query: 41 KALQLVREMPIHNEFP-NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNAL 99
+AL+L + F + T ++ AC +R K ++ + G D ++ N +
Sbjct: 105 EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164
Query: 100 TDMYAKCGCLNLAQNVFN-ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158
M+ KCG L A+ +F+ + R+ S+ +I G + E+ +LF EM G +
Sbjct: 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEP 224
Query: 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDC 218
+F+ + A A L + + G+++H ++ + FV+ +++D Y++ G I+ A +FD
Sbjct: 225 RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDG 284
Query: 219 LPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS-------- 270
+P K + +WN+++ GY + G + A+ L+ MR+ GV D ++ ++ S
Sbjct: 285 MPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA 344
Query: 271 ---HGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDAN 327
H GL+ G D V T +VDL + G MEDA + +P + N
Sbjct: 345 KQAHAGLIRTG------FPLDIVANT-----ALVDLYSKWGRMEDARNVFDRMPRK---N 390
Query: 328 I--WGALLGACRIYGNVELGAWAAEHLF--MLK----PQHCGYYILLSNMYAEAGKWDEA 379
+ W AL+ YGN G A E +F M+ P H + +L + +G ++
Sbjct: 391 LISWNALIAG---YGNHGRGTKAVE-MFERMIAEGVAPNHVTFLAVL-SACRYSGLSEQG 445
Query: 380 SKVRELM 386
++ + M
Sbjct: 446 WEIFQSM 452
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 5e-28
Identities = 92/382 (24%), Positives = 163/382 (42%), Gaps = 44/382 (11%)
Query: 41 KALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALT 100
+AL+L+ M + + C + G + +R + + + L NA+
Sbjct: 69 QALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128
Query: 101 DMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159
M+ + G L A VF + RD S+N+L+ GY++ E+L L+ M G++ DV
Sbjct: 129 SMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVY 188
Query: 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219
+F + C + + +G+E+H +R + V N+++ Y + G + A +FD +
Sbjct: 189 TFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM 248
Query: 220 PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS--------- 270
P +D SWN +I GY GE + LF MRE V D ++ ++++AC
Sbjct: 249 PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308
Query: 271 --HGGLVEKG------------------------KKYFDEMQA-DSVKPTEMHYACMVDL 303
HG +V+ G +K F M+ D+V T M +
Sbjct: 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNG 368
Query: 304 LGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYY 363
L L + L++ V PD ++L AC G++++G H + Y
Sbjct: 369 LPDKAL--ETYALMEQDNVSPDEITIASVLSACACLGDLDVG--VKLHELAERKGLISYV 424
Query: 364 IL---LSNMYAEAGKWDEASKV 382
++ L MY++ D+A +V
Sbjct: 425 VVANALIEMYSKCKCIDKALEV 446
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 8e-16
Identities = 56/233 (24%), Positives = 105/233 (45%), Gaps = 27/233 (11%)
Query: 122 DEVSYNILIVGYSQTSDCSES------LSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175
D Y LI S C++S +F EM G++ +V +F I CA +
Sbjct: 471 DCKLYTTLI------STCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524
Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL--------PVK-DSAS 226
+ +G+ K++ V N+++ +SG +D A FD L P+ D +
Sbjct: 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA---FDVLAEMKAETHPIDPDHIT 581
Query: 227 WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ 286
L+ G+VD A +++ + E + P Y + +CS G + +D+M+
Sbjct: 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641
Query: 287 ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE---PDANIWGALLGAC 336
VKP E+ ++ +VD+ G AG ++ A +++++ + + +L+GAC
Sbjct: 642 KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 4e-11
Identities = 68/291 (23%), Positives = 122/291 (41%), Gaps = 45/291 (15%)
Query: 141 ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSIL 200
++L L M+ L + D +++ C A+++G + + H + + N++L
Sbjct: 69 QALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128
Query: 201 DFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPV 260
+ R G + A +F +P +D SWN L+ GY G D A+ L+ M GV D
Sbjct: 129 SMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVY 188
Query: 261 SYIAILTACSHGGLVE--KGK-------KYFDEMQADSVKP-TEMHYAC--------MVD 302
++ +L C GG+ + +G+ ++ E+ D V M+ C + D
Sbjct: 189 TFPCVLRTC--GGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFD 246
Query: 303 LLGR----------AGLMEDAVKL--------IKNLPVEPDANIWGALLGACRIYGNVEL 344
+ R +G E+ L ++ L V+PD +++ AC + G+ L
Sbjct: 247 RMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERL 306
Query: 345 G----AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391
G + + F + C L MY G W EA KV M++++A
Sbjct: 307 GREMHGYVVKTGFAVDVSVCNS---LIQMYLSLGSWGEAEKVFSRMETKDA 354
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 71/329 (21%), Positives = 142/329 (43%), Gaps = 35/329 (10%)
Query: 40 LKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGK-----EIHARIIRKGLNFDLF 94
L+ L+LV+E + + T ++ CA+ GK E+ ++ G+ ++
Sbjct: 457 LRVLRLVQEAGLK---ADCKLYTTLISTCAKS-----GKVDAMFEVFHEMVNAGVEANVH 508
Query: 95 LTNALTDMYAKCGCLNLAQNVFNISFR-----DEVSYNILIVGYSQTSDCSESLSLFSEM 149
AL D A+ G + A + I D V +N LI Q+ + + +EM
Sbjct: 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEM 568
Query: 150 RLLG--MKHDVVSFMGAISACANLAAIKQGKE----IHGVTIRKHLHTHLFVANSILDFY 203
+ + D ++ + ACAN + + KE IH I+ + NS
Sbjct: 569 KAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS----C 624
Query: 204 TRSGRIDLANKIFDCLPVK----DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP 259
++ G D A I+D + K D ++ L+ G G++D A + + R+ G+
Sbjct: 625 SQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684
Query: 260 VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL--- 316
VSY +++ ACS+ +K + ++++++ ++PT ++ L + A+++
Sbjct: 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSE 744
Query: 317 IKNLPVEPDANIWGALLGACRIYGNVELG 345
+K L + P+ + LL A + ++G
Sbjct: 745 MKRLGLCPNTITYSILLVASERKDDADVG 773
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 8e-07
Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 20/172 (11%)
Query: 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298
++D A+ + ++E G+ D Y +++ C+ G V+ + F EM V+ +
Sbjct: 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFG 511
Query: 299 CMVDLLGRAGLMEDA-----VKLIKNLPVEPDANIWGALLGACRIYGNV--------ELG 345
++D RAG + A + KN V+PD ++ AL+ AC G V E+
Sbjct: 512 ALIDGCARAGQVAKAFGAYGIMRSKN--VKPDRVVFNALISACGQSGAVDRAFDVLAEMK 569
Query: 346 AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGC 397
A + P H L+ A AG+ D A +V +++ K P
Sbjct: 570 AETHP----IDPDHITVGALMKAC-ANAGQVDRAKEVYQMIHEYNIKGTPEV 616
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 1e-05
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH 271
D ++NTLI GY G+V+ A+ LF M++ G+ + +Y ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN 170
D V+YN LI GY + E+L LF+EM+ G+K +V ++ I
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 1e-04
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 226 SWNTLILGYGMLGEVDTAINLFEAMREDGV 255
++N+LI GY G+++ A+ LF+ M+E GV
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 9e-04
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 124 VSYNILIVGYSQTSDCSESLSLFSEMRLLGM 154
V+YN LI GY + E+L LF EM+ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.001
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 258 DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302
D V+Y ++ G VE+ K F+EM+ +KP Y+ ++D
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 21 KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70
++V++N ++ + + +AL+L EM PN T + ++ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.003
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYD 258
++NTLI G G V+ A+ LF+ M+E G+ D
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 423 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.93 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.81 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.79 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.78 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.75 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.74 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.74 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.74 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.68 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.68 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.67 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.67 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.66 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.66 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.66 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.64 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.63 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.63 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.62 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.62 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.62 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.61 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.57 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.57 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.56 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.54 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.54 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.54 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.53 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.52 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.48 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.47 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.44 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.44 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.41 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.38 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.38 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.37 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.37 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.36 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.36 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.35 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.34 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.33 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.32 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.32 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.29 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.28 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.28 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.27 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.27 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.25 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.19 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.18 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.17 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.16 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.16 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.16 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.14 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.14 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.12 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.11 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.09 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.09 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.08 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.07 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.06 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.05 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.05 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.99 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.99 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.99 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.98 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.96 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.94 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.93 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.9 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.88 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.83 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.82 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.82 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.81 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.8 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.79 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.78 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.77 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.75 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.75 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.74 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.73 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.72 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.72 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.7 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.7 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.64 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.63 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.62 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.6 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.6 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.59 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.59 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.56 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.55 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.54 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.52 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.51 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.5 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.49 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.47 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.46 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.43 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.41 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.4 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.4 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.36 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.35 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.34 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.31 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.3 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.28 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.27 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.25 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.22 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.22 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.19 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.18 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.17 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.17 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.16 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.13 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.11 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.1 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.03 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.02 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.0 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.0 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.98 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.95 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.94 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.93 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.92 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.9 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.9 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.9 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.88 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.88 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.88 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.86 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.85 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.85 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.84 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.84 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.83 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.82 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.8 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.8 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.8 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.77 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.76 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.75 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.73 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.73 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.68 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.68 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.62 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.59 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.58 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.58 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.53 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.53 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.52 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.51 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.49 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.49 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.48 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.47 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.46 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.43 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.41 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.39 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.38 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.36 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.35 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.34 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.32 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.32 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.28 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.28 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.28 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.23 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 97.23 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.19 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.18 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.15 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.14 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.13 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.12 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.11 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.98 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.78 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.74 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.71 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.7 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 96.62 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.58 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.56 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.56 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.56 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.51 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.44 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.39 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.37 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.37 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.32 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.3 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.26 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.17 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.14 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.14 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.12 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.1 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.03 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.98 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.97 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 95.96 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.89 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.85 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.81 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.77 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.76 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.73 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.72 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.48 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 95.42 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.42 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.41 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.36 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.34 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.16 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.12 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.08 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.0 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.95 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.94 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.92 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.87 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.86 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.85 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.84 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.79 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.76 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.73 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.69 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.61 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.6 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.45 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.4 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.19 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.0 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.97 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.93 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.9 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.86 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.82 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.81 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 93.8 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.76 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.46 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 93.31 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.25 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.24 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 93.14 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 92.95 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 92.86 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.68 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.53 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.45 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.43 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.15 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.05 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.91 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.66 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.6 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.55 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.39 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.33 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.13 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 91.01 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 90.93 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.93 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 90.78 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.66 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.33 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 90.32 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 90.3 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.05 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.75 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.51 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.28 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.07 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 89.02 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.94 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 88.92 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 88.76 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.66 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 88.53 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 88.49 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.36 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 88.12 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.04 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.02 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.75 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 87.66 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 87.22 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.93 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 86.77 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 86.18 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.72 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 85.67 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 85.52 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 85.48 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 85.36 | |
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 83.75 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 82.92 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 82.8 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 82.05 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 81.7 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 81.69 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 81.59 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 80.87 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-71 Score=534.76 Aligned_cols=421 Identities=34% Similarity=0.628 Sum_probs=413.7
Q ss_pred CccccCCcchhHHhhcccCCcChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHH
Q 038550 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEI 80 (423)
Q Consensus 1 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 80 (423)
+|++.|++++|.++|++|++||..+||.+|.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|..+.+.++
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l 246 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQL 246 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh-chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchh
Q 038550 81 HARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159 (423)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 159 (423)
+..+.+.|+.||..+|+.|+++|++.|++++|.++| ++.++|+.+||.++.+|++.|++++|+++|++|.+.|+.||..
T Consensus 247 ~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~ 326 (697)
T PLN03081 247 HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326 (697)
T ss_pred HHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 999999999999999999999999999999999999 7778899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCC
Q 038550 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239 (423)
Q Consensus 160 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 239 (423)
||+.++.+|++.|++++|.+++..|.+.|+.|+..++++|+++|+++|++++|.++|++|.++|..+||.||.+|++.|+
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~ 406 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGR 406 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCChHHHHHHHh
Q 038550 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318 (423)
Q Consensus 240 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (423)
.++|.++|++|.+.|+.||..||+.++.+|++.|+.++|.++|+.|.+. |+.|+..+|+.++.+|++.|++++|.++++
T Consensus 407 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~ 486 (697)
T PLN03081 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR 486 (697)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999875 999999999999999999999999999999
Q ss_pred hCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCCCCc
Q 038550 319 NLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCS 398 (423)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 398 (423)
+|+..|+..+|++|+.+|...|+++.|..+++++.+..|.+..+|..++.+|++.|++++|.+++++|.++|+++.|+++
T Consensus 487 ~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s 566 (697)
T PLN03081 487 RAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACT 566 (697)
T ss_pred HCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceeeeeecCCCCCCCCC
Q 038550 399 WVQTRDEVQDFVVNDRMKTFTPG 421 (423)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~ 421 (423)
|+.+.+.+|.|.++|.+||++++
T Consensus 567 ~i~~~~~~~~f~~~d~~h~~~~~ 589 (697)
T PLN03081 567 WIEVKKQDHSFFSGDRLHPQSRE 589 (697)
T ss_pred EEEECCeEEEEccCCCCCccHHH
Confidence 99999999999999999998764
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-68 Score=523.64 Aligned_cols=419 Identities=41% Similarity=0.742 Sum_probs=410.7
Q ss_pred CccccCCcchhHHhhcccCCcChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHH
Q 038550 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEI 80 (423)
Q Consensus 1 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 80 (423)
+|++.|++++|.++|++|.+||..+||.+|.+|.+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++
T Consensus 332 ~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l 411 (857)
T PLN03077 332 MYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411 (857)
T ss_pred HHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh-chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchh
Q 038550 81 HARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159 (423)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 159 (423)
++.|.+.|+.|+..+|+.|+++|++.|++++|.++| ++..+|..+|+.+|.+|++.|+.++|+.+|++|.. +++||..
T Consensus 412 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~ 490 (857)
T PLN03077 412 HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSV 490 (857)
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHh
Confidence 999999999999999999999999999999999999 77788999999999999999999999999999986 5899999
Q ss_pred hHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCC
Q 038550 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239 (423)
Q Consensus 160 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 239 (423)
||+.++.+|++.|+++.+.+++..+.+.|+.++..++++++++|+++|++++|.++|+.+ .+|..+||++|.+|++.|+
T Consensus 491 t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~ 569 (857)
T PLN03077 491 TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGK 569 (857)
T ss_pred HHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH-HcCCCCChhhHHHHHHHHHhcCChHHHHHHHh
Q 038550 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ-ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318 (423)
Q Consensus 240 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (423)
.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|+.++.+|++.|++++|.++++
T Consensus 570 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 570 GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649 (857)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 55999999999999999999999999999999
Q ss_pred hCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCCCCc
Q 038550 319 NLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCS 398 (423)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 398 (423)
+|+++||..+|++|+.+|...|+.+.++...+++.+++|++...|..+...|...|+|++|.++.+.|.++|++++|++|
T Consensus 650 ~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s 729 (857)
T PLN03077 650 KMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCS 729 (857)
T ss_pred HCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceeeeeecCCCCCCCCC
Q 038550 399 WVQTRDEVQDFVVNDRMKTFTPG 421 (423)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~ 421 (423)
|+.+.+++|.|.++|.+||+++|
T Consensus 730 ~ie~~~~~~~f~~~d~~h~~~~~ 752 (857)
T PLN03077 730 WVEVKGKVHAFLTDDESHPQIKE 752 (857)
T ss_pred EEEECCEEEEEecCCCCCcchHH
Confidence 99999999999999999999864
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-61 Score=468.99 Aligned_cols=395 Identities=17% Similarity=0.234 Sum_probs=296.0
Q ss_pred ccccCCcchhHHhhcccCCcChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHH
Q 038550 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIH 81 (423)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 81 (423)
|++.|.+++|..+|+.|+.||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|
T Consensus 416 ~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf 495 (1060)
T PLN03218 416 CKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVF 495 (1060)
T ss_pred HHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 44566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHhc-----hhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHh--cCC
Q 038550 82 ARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-----ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRL--LGM 154 (423)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--~~~ 154 (423)
++|.+.|+.||..+|+.+|.+|++.|++++|.++|+ ...||..+|+.+|.+|++.|++++|.++|++|.. .|+
T Consensus 496 ~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi 575 (1060)
T PLN03218 496 HEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI 575 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCC
Confidence 777777777777777777777777777777777772 2356777777777777777777777777777765 467
Q ss_pred CCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC----CCChhhHHHH
Q 038550 155 KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP----VKDSASWNTL 230 (423)
Q Consensus 155 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l 230 (423)
.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.+
T Consensus 576 ~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsL 655 (1060)
T PLN03218 576 DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL 655 (1060)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777777777777776 4677777777
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 038550 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310 (423)
Q Consensus 231 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 310 (423)
|.+|++.|++++|.+++++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++
T Consensus 656 I~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~ 735 (1060)
T PLN03218 656 VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL 735 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhhC---CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCcchHHHHHHHHHh----c---------
Q 038550 311 EDAVKLIKNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK-PQHCGYYILLSNMYAE----A--------- 373 (423)
Q Consensus 311 ~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~----~--------- 373 (423)
++|.++|++| ++.||..+|+.++.+|++.|+++.|.+++++|.+.+ .++..+|+.++..|.+ .
T Consensus 736 eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~ 815 (1060)
T PLN03218 736 PKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVS 815 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 7777777776 677777777777777777777777777777777765 3445566666544321 1
Q ss_pred ----------CChhHHHHHHHHHHhccccCCCC
Q 038550 374 ----------GKWDEASKVRELMKSREAKKNPG 396 (423)
Q Consensus 374 ----------g~~~~A~~~~~~m~~~~~~~~~~ 396 (423)
+..++|..+|++|.+.|+.|+..
T Consensus 816 f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~ 848 (1060)
T PLN03218 816 FDSGRPQIENKWTSWALMVYRETISAGTLPTME 848 (1060)
T ss_pred hhccccccccchHHHHHHHHHHHHHCCCCCCHH
Confidence 12356777777777777777753
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-61 Score=466.76 Aligned_cols=391 Identities=16% Similarity=0.252 Sum_probs=372.0
Q ss_pred ccccCCcchhHHhhcccCCc-----ChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCcc
Q 038550 2 YAKSSRPAEASYLFHNIAEK-----NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRP 76 (423)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 76 (423)
|++.|++++|+++|++|+++ +...++.++..|.+.|.+++|+.+|+.|.. ||..+|+.++.+|++.|+++.
T Consensus 380 l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~ 455 (1060)
T PLN03218 380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDG 455 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHH
Confidence 56889999999999999874 445667788889999999999999999975 899999999999999999999
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh-chh----cCCcchHHHHHHHHhcCCChhhHHHHHHHHHh
Q 038550 77 GKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS----FRDEVSYNILIVGYSQTSDCSESLSLFSEMRL 151 (423)
Q Consensus 77 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 151 (423)
|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++| ++. .||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 456 A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~ 535 (1060)
T PLN03218 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 333 58999999999999999999999999999999
Q ss_pred cCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHH--hccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC----CCChh
Q 038550 152 LGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR--KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP----VKDSA 225 (423)
Q Consensus 152 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~ 225 (423)
.|+.||..||+.+|.+|++.|++++|.+++++|.. .++.|+..+|++++.+|++.|++++|.++|+.|. .|+..
T Consensus 536 ~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ 615 (1060)
T PLN03218 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChH
Confidence 99999999999999999999999999999999987 6789999999999999999999999999999997 46779
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (423)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.||.+|+
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHhhC---CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCcchHHHHHHHHHhcCChhHHHH
Q 038550 306 RAGLMEDAVKLIKNL---PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK-PQHCGYYILLSNMYAEAGKWDEASK 381 (423)
Q Consensus 306 ~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 381 (423)
+.|++++|.++|++| ++.||..+|+.||.+|++.|++++|.++|++|.+.+ .++..+|..++.+|++.|++++|.+
T Consensus 696 k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~ 775 (1060)
T PLN03218 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999998 689999999999999999999999999999998876 5678899999999999999999999
Q ss_pred HHHHHHhccccCCCC
Q 038550 382 VRELMKSREAKKNPG 396 (423)
Q Consensus 382 ~~~~m~~~~~~~~~~ 396 (423)
++++|.+.|+.|+..
T Consensus 776 l~~~M~k~Gi~pd~~ 790 (1060)
T PLN03218 776 LLSQAKEDGIKPNLV 790 (1060)
T ss_pred HHHHHHHcCCCCCHH
Confidence 999999999999864
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-61 Score=474.40 Aligned_cols=392 Identities=25% Similarity=0.385 Sum_probs=367.1
Q ss_pred CccccCCcchhHHhhcccCCcChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHH
Q 038550 1 MYAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEI 80 (423)
Q Consensus 1 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 80 (423)
+|++.|++++|.++|++|++||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++
T Consensus 231 ~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l 310 (857)
T PLN03077 231 MYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREM 310 (857)
T ss_pred HHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh-chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchh
Q 038550 81 HARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159 (423)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 159 (423)
+..|.+.|+.||..+|+.|+.+|++.|++++|.++| ++..+|..+||.++.+|++.|++++|+++|++|.+.|+.||..
T Consensus 311 ~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~ 390 (857)
T PLN03077 311 HGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI 390 (857)
T ss_pred HHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCce
Confidence 999999999999999999999999999999999999 7778899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCC
Q 038550 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239 (423)
Q Consensus 160 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 239 (423)
||+.++.+|++.|+++.+.++++.+.+.|..|+..+++.|+.+|++.|++++|.++|++|.++|..+|+.+|.+|++.|+
T Consensus 391 t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~ 470 (857)
T PLN03077 391 TIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNR 470 (857)
T ss_pred eHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhh
Q 038550 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKN 319 (423)
Q Consensus 240 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 319 (423)
.++|..+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+.|+.++..++++|+.+|+++|++++|.++|+.
T Consensus 471 ~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~ 549 (857)
T PLN03077 471 CFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS 549 (857)
T ss_pred HHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHh
Confidence 9999999999986 599999999999999999999999999999999999988888888888888888888888888888
Q ss_pred CCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCcchHHHHHHHHHhcCChhHHHHHHHHHH-hccccCCC
Q 038550 320 LPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK-PQHCGYYILLSNMYAEAGKWDEASKVRELMK-SREAKKNP 395 (423)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~~~ 395 (423)
+ .||..+|+++|.+|++.|+.++|.++|++|.+.+ .++..+|..++.+|.+.|++++|.++|++|. +.|+.|+.
T Consensus 550 ~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 550 H--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred c--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 7 7788888888888888888888888888887765 4456778888888888888888888888887 56777764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-57 Score=434.71 Aligned_cols=374 Identities=22% Similarity=0.344 Sum_probs=360.3
Q ss_pred cChhhHHHHHHHHHhCCChHHHHHHHhhchhCC-CCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHH
Q 038550 21 KNIVSWNAMVANFAQNRLELKALQLVREMPIHN-EFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNAL 99 (423)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 99 (423)
++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 456699999999999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHh-chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhh
Q 038550 100 TDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178 (423)
Q Consensus 100 ~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 178 (423)
+.+|++.|++++|.++| ++..||..+||.++.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|++.|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999 77789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC
Q 038550 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD 258 (423)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 258 (423)
+++..+.+.|..++..++++|+++|++.|++++|.++|++|.++|+.+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHh
Q 038550 259 PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338 (423)
Q Consensus 259 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~ 338 (423)
..||+.++.+|++.|++++|.+++..|.+.|++||..+|+.|+.+|+++|++++|.++|++|. .||..+|++||.+|++
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYGN 403 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999996 6899999999999999
Q ss_pred cCChhHHHHHHHHHHhcC-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHh-ccccCCC
Q 038550 339 YGNVELGAWAAEHLFMLK-PQHCGYYILLSNMYAEAGKWDEASKVRELMKS-REAKKNP 395 (423)
Q Consensus 339 ~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~~~~ 395 (423)
.|+.++|.++|++|.+.+ .++..+|..++.+|.+.|.+++|.++|+.|.+ .|+.|+.
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~ 462 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999998876 55678899999999999999999999999986 5887765
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-28 Score=244.80 Aligned_cols=382 Identities=13% Similarity=0.042 Sum_probs=257.3
Q ss_pred ccccCCcchhHHhhcccCC---cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHH
Q 038550 2 YAKSSRPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGK 78 (423)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 78 (423)
|.+.|++++|...|+++.+ .+..++..+...+...|++++|.+.|+++.+.+ +.+..++..+...+.+.|+.++|.
T Consensus 475 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 553 (899)
T TIGR02917 475 YLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAV 553 (899)
T ss_pred HHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHH
Confidence 4567788888888877643 345566677777777788888888887777653 335566777777777777777777
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCC
Q 038550 79 EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGM 154 (423)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 154 (423)
..++++.+.+ +.+...+..++..+...|++++|..++ +..+.+...|..+..++...|++++|...|+++.+..
T Consensus 554 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 631 (899)
T TIGR02917 554 AWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ- 631 (899)
T ss_pred HHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 7777776654 445566666777777777777777777 2234455667777777777777777777777776653
Q ss_pred CCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHH
Q 038550 155 KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLI 231 (423)
Q Consensus 155 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li 231 (423)
+.+...+..+..++...|++++|..+++.+.+..+ .+...+..++..+...|++++|..+++.+. ..+...+..+.
T Consensus 632 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 710 (899)
T TIGR02917 632 PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEG 710 (899)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHH
Confidence 34555666677777777777777777777766532 335566667777777777777777776665 23455566666
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 038550 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLME 311 (423)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 311 (423)
..+...|++++|...++++...+ |+..++..+..++.+.|++++|.+.++.+.+.. +.+...+..+...|...|+++
T Consensus 711 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~ 787 (899)
T TIGR02917 711 DLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYD 787 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 67777777777777777766653 344556666666777777777777777766653 445666666667777777777
Q ss_pred HHHHHHhhC-CCC-CCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 312 DAVKLIKNL-PVE-PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 312 ~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
+|.+.|+++ ... +++.+++.+...+...|+ ++|+..++++.+..|.++.++..++.++...|++++|.++++++.+.
T Consensus 788 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 788 KAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 777777666 222 355566666666666666 66777777776666666666666666677777777777777776665
Q ss_pred cc
Q 038550 390 EA 391 (423)
Q Consensus 390 ~~ 391 (423)
+.
T Consensus 867 ~~ 868 (899)
T TIGR02917 867 AP 868 (899)
T ss_pred CC
Confidence 43
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-27 Score=237.61 Aligned_cols=380 Identities=11% Similarity=0.001 Sum_probs=267.2
Q ss_pred ccccCCcchhHHhhcccCC---cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHH
Q 038550 2 YAKSSRPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGK 78 (423)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 78 (423)
|.+.|++++|..+++.+.+ ++..+|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.
T Consensus 441 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 519 (899)
T TIGR02917 441 YLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAI 519 (899)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 4566777777777777654 355677777777777777777777777776543 234456666677777777777777
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCC
Q 038550 79 EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGM 154 (423)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 154 (423)
+.++.+.+.+ +.+..++..+...+.+.|+.++|...| ...+.+...+..++..+...|++++|..+++++.+..
T Consensus 520 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 597 (899)
T TIGR02917 520 QRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA- 597 (899)
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-
Confidence 7777777664 445667777777777777777777777 2234455666777777777777777777777776643
Q ss_pred CCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHH
Q 038550 155 KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLI 231 (423)
Q Consensus 155 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li 231 (423)
+.+..++..+..++...|++++|...++.+.+..+ .+...+..+..++.+.|++++|...|+++. +.+..++..++
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 676 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLA 676 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 45566777777777777777777777777776543 344556667777777777777777777654 33556777777
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 038550 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLME 311 (423)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 311 (423)
..+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|...++.+...+ |+..++..+..++.+.|+++
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHH
Confidence 77777777777777777777664 3355666777777777777777777777777653 44456666777777777777
Q ss_pred HHHHHHhhC-CC-CCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 312 DAVKLIKNL-PV-EPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 312 ~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
+|.+.++++ .. ..+...+..+...|...|++++|...|+++.+..|+++.++..++..+...|+ ++|+.++++..+.
T Consensus 754 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 754 EAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 777777766 22 33566677777777777777777777777777777777777777777777777 6777777777654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-23 Score=186.41 Aligned_cols=318 Identities=10% Similarity=0.023 Sum_probs=226.6
Q ss_pred HHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHhch-hc-CC------cchHHHHHHHHhcC
Q 038550 65 LPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI-SF-RD------EVSYNILIVGYSQT 136 (423)
Q Consensus 65 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~-~~------~~~~~~l~~~~~~~ 136 (423)
...+...|++++|...|+++.+.+ +.+..++..+...+...|++++|...++. .. ++ ...+..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344556777888888888887764 34455677777777777777777777621 11 11 13456666777777
Q ss_pred CChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHh
Q 038550 137 SDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIF 216 (423)
Q Consensus 137 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 216 (423)
|++++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------------------- 178 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE--------------------- 178 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH---------------------
Confidence 77777777777776542 34455666666666666777777666666655433221100
Q ss_pred ccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhh
Q 038550 217 DCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH 296 (423)
Q Consensus 217 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 296 (423)
....+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.++++++...+......+
T Consensus 179 ------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 179 ------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred ------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 01134456677788889999999999888753 22456777888889999999999999999987642223456
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh---
Q 038550 297 YACMVDLLGRAGLMEDAVKLIKNL-PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAE--- 372 (423)
Q Consensus 297 ~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 372 (423)
+..++.+|...|++++|...++++ ...|+...+..+...+.+.|++++|..+++++.+..|++.. +..+...+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~ 330 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAE 330 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccC
Confidence 788899999999999999999987 55787777788899999999999999999999999988764 4444444443
Q ss_pred cCChhHHHHHHHHHHhccccCCCCCcccccccceeeeeecC
Q 038550 373 AGKWDEASKVRELMKSREAKKNPGCSWVQTRDEVQDFVVND 413 (423)
Q Consensus 373 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (423)
.|+.+++..++++|.+++++|+|...+...+.....|...+
T Consensus 331 ~g~~~~a~~~~~~~~~~~~~~~p~~~c~~cg~~~~~~~~~c 371 (389)
T PRK11788 331 EGRAKESLLLLRDLVGEQLKRKPRYRCRNCGFTARTLYWHC 371 (389)
T ss_pred CccchhHHHHHHHHHHHHHhCCCCEECCCCCCCCccceeEC
Confidence 56899999999999999999999877776666555544433
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-22 Score=188.33 Aligned_cols=252 Identities=13% Similarity=0.034 Sum_probs=206.8
Q ss_pred CCChhhHHHHHHHHHhcC-CCC-chhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHH
Q 038550 136 TSDCSESLSLFSEMRLLG-MKH-DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213 (423)
Q Consensus 136 ~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 213 (423)
.+++++|.+.|++..+.+ ..| ....+..+...+...|++++|...++..+...+ .....|..+..++...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHH
Confidence 367889999999998765 233 445677888888899999999999999988653 23556777888999999999999
Q ss_pred HHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 038550 214 KIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290 (423)
Q Consensus 214 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 290 (423)
..|+... +.+..+|..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...+++.....
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~- 463 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF- 463 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 9998765 3467889999999999999999999999998864 2356778888889999999999999999998763
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCH-h-------HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc
Q 038550 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDA-N-------IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG 361 (423)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~-~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 361 (423)
+.+...++.+...+...|++++|+..|++. .+.|+. . .++..+..+...|++++|...++++.+.+|.+..
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~ 543 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDI 543 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 456788899999999999999999999986 444421 1 1222222344569999999999999999999988
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 362 YYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 362 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
++..++.++.+.|++++|+..|++..+..
T Consensus 544 a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 544 AVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999987643
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-21 Score=194.04 Aligned_cols=383 Identities=10% Similarity=-0.002 Sum_probs=280.0
Q ss_pred ccccCCcchhHHhhcccCC--c-ChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCC-CchhHH------------HHH
Q 038550 2 YAKSSRPAEASYLFHNIAE--K-NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFP-NSVTLT------------NVL 65 (423)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~------------~l~ 65 (423)
+.+.|++++|+..|++..+ | +..++..+...+.+.|++++|+..|++..+..... ....+. ...
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 3467999999999998765 3 67788999999999999999999999988754211 111121 123
Q ss_pred HHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHH-----------
Q 038550 66 PACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILI----------- 130 (423)
Q Consensus 66 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~----------- 130 (423)
..+.+.|++++|...|+++++.. +.+...+..+..++...|++++|++.| +..+.+...+..+.
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A 437 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKA 437 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHH
Confidence 45678899999999999998875 445677778889999999999999999 22233333443333
Q ss_pred -------------------------------HHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhH
Q 038550 131 -------------------------------VGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179 (423)
Q Consensus 131 -------------------------------~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 179 (423)
..+...|++++|++.|++..+.. +-+...+..+...+.+.|++++|..
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 33445677777777777777643 2345566667777777788888888
Q ss_pred HHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCC----h---------hhHHHHHHHHhccCCHHHHHHH
Q 038550 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD----S---------ASWNTLILGYGMLGEVDTAINL 246 (423)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~---------~~~~~li~~~~~~g~~~~a~~~ 246 (423)
.++.+.+..+. +...+..+...+...++.++|...++.+.... . ..+..+...+...|+.++|..+
T Consensus 517 ~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 517 LMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 77777765432 23333334445666777777877777765321 1 1122345567778888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-
Q 038550 247 FEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP- 324 (423)
Q Consensus 247 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~- 324 (423)
++. .+.+...+..+...+.+.|++++|...|+++.+.. +.+...+..++..|...|++++|++.++.+ ...|
T Consensus 596 l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~ 669 (1157)
T PRK11447 596 LRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND 669 (1157)
T ss_pred HHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 772 24456677788889999999999999999999874 456788899999999999999999999987 4455
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc------hHHHHHHHHHhcCChhHHHHHHHHHHh-ccccC
Q 038550 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG------YYILLSNMYAEAGKWDEASKVRELMKS-REAKK 393 (423)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~~ 393 (423)
+..++..+..++...|++++|..+++++....|+++. .+..++..+...|++++|+..|++... .|+.|
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 4566777888899999999999999999987765543 556678889999999999999998863 34443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-22 Score=174.92 Aligned_cols=359 Identities=12% Similarity=0.120 Sum_probs=299.4
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchH-HHHHHHH
Q 038550 23 IVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLF-LTNALTD 101 (423)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~ 101 (423)
..+|+.+...+-..|++++|+.+++.+.+.. +-....|..+..++...|+.+.|.+.|.+.++. .|+.. ..+.+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 4578889999999999999999999999864 225678999999999999999999999999876 44443 4455666
Q ss_pred HHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCc-hhhHHHHHHHHHhHhhHHh
Q 038550 102 MYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHD-VVSFMGAISACANLAAIKQ 176 (423)
Q Consensus 102 ~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~ 176 (423)
.+...|++.+|...+ +..+.-.++|+.|...+...|+...|++.|++..+. .|+ ...|..+...|...+.++.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchH
Confidence 677789999999888 333445678999999999999999999999999874 454 5688899999999999999
Q ss_pred hhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC--C-ChhhHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 038550 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV--K-DSASWNTLILGYGMLGEVDTAINLFEAMRED 253 (423)
Q Consensus 177 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 253 (423)
|...+.......+ .....+..+...|...|.+|-|+..|++... | -...|+.|..++-..|++.+|...+.+....
T Consensus 271 Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 271 AVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 9999988877543 3355566677888999999999999998763 3 4578999999999999999999999998875
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCH-hHHH
Q 038550 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT-EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDA-NIWG 330 (423)
Q Consensus 254 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~-~~~~ 330 (423)
.. -...+.+.|...+...|.++.|..+|....+- .|. ...++.|...|-..|++++|+..+++. .++|+. ..++
T Consensus 350 ~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~ 426 (966)
T KOG4626|consen 350 CP-NHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALS 426 (966)
T ss_pred CC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHH
Confidence 32 24568888999999999999999999988874 343 567888889999999999999999887 788864 5888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 331 ALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 331 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
.+...|-..|+.+.|.+.+.+++..+|.-..+++.|+..|-..|+..+|++-|+...+..
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 899999999999999999999999999988999999999999999999999999887643
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.7e-21 Score=181.36 Aligned_cols=350 Identities=10% Similarity=-0.030 Sum_probs=266.7
Q ss_pred cCCcchhHHhhcccCC------cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHH
Q 038550 5 SSRPAEASYLFHNIAE------KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGK 78 (423)
Q Consensus 5 ~g~~~~A~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 78 (423)
+.+++.---+|...++ .+..-.-.++..+.+.|++++|..+++....... -+...+..++.+....|+++.|.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~ 96 (656)
T PRK15174 18 QEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVL 96 (656)
T ss_pred hhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHH
Confidence 3344444444444443 2333455667788889999999999998887642 34455666667777899999999
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCC
Q 038550 79 EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGM 154 (423)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 154 (423)
..++++.+.. +.+...+..+...+...|++++|...+ ...+.+...+..+...+...|++++|...++++....
T Consensus 97 ~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~- 174 (656)
T PRK15174 97 QVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV- 174 (656)
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-
Confidence 9999998875 556778888888999999999999988 3345567788889999999999999999999887653
Q ss_pred CCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHH
Q 038550 155 KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLI 231 (423)
Q Consensus 155 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li 231 (423)
+.+...+..+ ..+...|++++|...++.+.+....++......+..++.+.|++++|...++... +.+...+..+.
T Consensus 175 P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg 253 (656)
T PRK15174 175 PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLG 253 (656)
T ss_pred CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 2233333333 3477889999999999988776544445555556778889999999999998765 33567788888
Q ss_pred HHHhccCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 038550 232 LGYGMLGEVDT----AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA 307 (423)
Q Consensus 232 ~~~~~~g~~~~----a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 307 (423)
..+...|++++ |...+++..+.. +.+...+..+...+...|++++|...+++..... +.+...+..+..++.+.
T Consensus 254 ~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~ 331 (656)
T PRK15174 254 LAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQV 331 (656)
T ss_pred HHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 89999999885 788999888763 2256788888899999999999999999988864 34566677788889999
Q ss_pred CChHHHHHHHhhC-CCCCCHhH-HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 038550 308 GLMEDAVKLIKNL-PVEPDANI-WGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 308 ~~~~~a~~~~~~~-~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 360 (423)
|++++|...|+++ ...|+... +..+..++...|+.++|...|+++.+..|++.
T Consensus 332 G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 332 GQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999887 45665433 34456678899999999999999999988764
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-22 Score=174.69 Aligned_cols=362 Identities=14% Similarity=0.092 Sum_probs=308.6
Q ss_pred ccCCcchhHHhhcccCC---cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHH-HHHHhhcCCCCccHHH
Q 038550 4 KSSRPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTN-VLPACARGHFLRPGKE 79 (423)
Q Consensus 4 ~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~ 79 (423)
..|++++|+.+++.+.+ ..+.+|.-+..++...|+.+.|.+.|.+.++. .|+.....+ +-..+-..|++++|..
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 57899999999999876 46789999999999999999999999998875 466654433 4444556899999999
Q ss_pred HHHHHHHcCCCCc-hHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCC
Q 038550 80 IHARIIRKGLNFD-LFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGM 154 (423)
Q Consensus 80 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 154 (423)
.|.+.++.. |. ...|+.|...+-..|++..|+..| ...+.-..+|-.|...|...+.++.|+..|.+....
T Consensus 206 cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 206 CYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 999998773 43 457888999999999999999999 233445678999999999999999999999998874
Q ss_pred CC-chhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHH
Q 038550 155 KH-DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTL 230 (423)
Q Consensus 155 ~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 230 (423)
.| ....+..+...|...|.++.|+..+++.++..+. -...|+.|..++-..|+..+|.+.|.+.. .....+.+.|
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL 360 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL 360 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence 45 4567888888999999999999999999886543 36788999999999999999999998776 3456788999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcC
Q 038550 231 ILGYGMLGEVDTAINLFEAMREDGVGYD-PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT-EMHYACMVDLLGRAG 308 (423)
Q Consensus 231 i~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 308 (423)
...|...|.++.|..+|....+- .|. ...++.|...|-++|++++|...|++.++ +.|+ ...|+.+...|-..|
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhh
Confidence 99999999999999999998874 454 45788999999999999999999999987 5676 568889999999999
Q ss_pred ChHHHHHHHhhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 038550 309 LMEDAVKLIKNL-PVEPD-ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKW 376 (423)
Q Consensus 309 ~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 376 (423)
+.+.|.+.+.+. .+.|. ...++.|...|...|++.+|+..|+.+.+++|+.+.++..++.++.-..+|
T Consensus 437 ~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcc
Confidence 999999999887 67775 568899999999999999999999999999999999999888776544444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.7e-21 Score=172.99 Aligned_cols=292 Identities=16% Similarity=0.099 Sum_probs=217.4
Q ss_pred HHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCc---hHHHHHHHHHHH
Q 038550 28 AMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFD---LFLTNALTDMYA 104 (423)
Q Consensus 28 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 104 (423)
.....+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 33455678899999999999999874 23556888899999999999999999999987643222 356788899999
Q ss_pred hcCChHHHHHHh-ch---hcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCch----hhHHHHHHHHHhHhhHHh
Q 038550 105 KCGCLNLAQNVF-NI---SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV----VSFMGAISACANLAAIKQ 176 (423)
Q Consensus 105 ~~g~~~~a~~~~-~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~ 176 (423)
+.|++++|..+| +. .+.+..+++.++..+.+.|++++|.+.++++.+.+..+.. ..+..+...+.+.|++++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999 22 3456778999999999999999999999999886532221 122233334444445555
Q ss_pred hhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 038550 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256 (423)
Q Consensus 177 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 256 (423)
|...++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+..
T Consensus 199 A~~~~~~al~~~--------------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 246 (389)
T PRK11788 199 ARALLKKALAAD--------------------------------PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE 246 (389)
T ss_pred HHHHHHHHHhHC--------------------------------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence 555444444322 113445666777788888888888888888765332
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCHhHHHHHHHH
Q 038550 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDANIWGALLGA 335 (423)
Q Consensus 257 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~ 335 (423)
....++..++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++ ...|+...++.++..
T Consensus 247 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~ 324 (389)
T PRK11788 247 YLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDY 324 (389)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 22456778888888889999999999888875 456666678888888999999999988876 667888888888877
Q ss_pred HHh---cCChhHHHHHHHHHHh
Q 038550 336 CRI---YGNVELGAWAAEHLFM 354 (423)
Q Consensus 336 ~~~---~~~~~~a~~~~~~~~~ 354 (423)
+.. .|+.+++..+++++.+
T Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 325 HLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hhhccCCccchhHHHHHHHHHH
Confidence 664 4578888888888776
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.4e-20 Score=174.28 Aligned_cols=353 Identities=13% Similarity=0.012 Sum_probs=281.4
Q ss_pred HHhCCChHHHHHHHhhchhCC--CCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChH
Q 038550 33 FAQNRLELKALQLVREMPIHN--EFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLN 110 (423)
Q Consensus 33 ~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 110 (423)
+.++.+|+.-.-.|+...++- -.-+..-...++..+.+.|+++.|..+++..+..... +...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence 445566666555565554331 1112334556677788999999999999999987533 3455555667777899999
Q ss_pred HHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHH
Q 038550 111 LAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR 186 (423)
Q Consensus 111 ~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 186 (423)
+|...| ...+.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+..
T Consensus 94 ~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 94 AVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999 4456677889999999999999999999999999853 44566788889999999999999999998877
Q ss_pred hccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCC----ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 038550 187 KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK----DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSY 262 (423)
Q Consensus 187 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 262 (423)
..+.+....+. + ..+...|++++|...++.+.+. +...+..+..++...|++++|...++++.+.. +.+...+
T Consensus 173 ~~P~~~~a~~~-~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~ 249 (656)
T PRK15174 173 EVPPRGDMIAT-C-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALR 249 (656)
T ss_pred hCCCCHHHHHH-H-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 66544433332 3 3478899999999999886532 33444556778889999999999999999864 3367788
Q ss_pred HHHHHHHhccCcHHH----HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHH
Q 038550 263 IAILTACSHGGLVEK----GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGAC 336 (423)
Q Consensus 263 ~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~ 336 (423)
..+...+...|++++ |...++++.+.. +.+...+..+...+...|++++|...+++. ...| +...+..+..++
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 889999999999985 899999998864 446778889999999999999999999988 4556 456777888999
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 337 RIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 337 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
...|++++|+..++++.+..|.++..+..++.++...|++++|+..|++..+...
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 9999999999999999999999877777778889999999999999999877643
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-19 Score=184.70 Aligned_cols=318 Identities=11% Similarity=0.035 Sum_probs=163.4
Q ss_pred hhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh-c---hhcCCc--chHH------------HH
Q 038550 68 CARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-N---ISFRDE--VSYN------------IL 129 (423)
Q Consensus 68 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~---~~~~~~--~~~~------------~l 129 (423)
+...|++++|...|++.++.. +.+...+..+..++.+.|++++|+..| + ..+.+. ..|. ..
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 445566666666666666553 335566666666666677777776666 1 111111 1111 11
Q ss_pred HHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHH--------
Q 038550 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILD-------- 201 (423)
Q Consensus 130 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-------- 201 (423)
...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|++.|+++.+..+.. ...+..+..
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~-~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN-TNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCHH
Confidence 334556666667777666666643 3344455566666666677777777776666543321 122222222
Q ss_pred ----------------------------------HHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHH
Q 038550 202 ----------------------------------FYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAI 244 (423)
Q Consensus 202 ----------------------------------~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~ 244 (423)
.+...|++++|.+.|++.. +.+...+..+...|.+.|++++|.
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 2333444444444444433 113334444444555555555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc------------------------------------
Q 038550 245 NLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD------------------------------------ 288 (423)
Q Consensus 245 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------------------------------------ 288 (423)
..++++.+... .+...+..+...+...++.++|...++.+...
T Consensus 516 ~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 516 ALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 55555443211 11211111111122222222222222211000
Q ss_pred ---CCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchH
Q 038550 289 ---SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYY 363 (423)
Q Consensus 289 ---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 363 (423)
..+.+...+..+...+.+.|++++|+..|+++ ...| +...+..+...+...|++++|+..++.+.+..|+++.++
T Consensus 595 ~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~ 674 (1157)
T PRK11447 595 LLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQ 674 (1157)
T ss_pred HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHH
Confidence 01223334444555556666666666666655 3344 455666666666667777777777776666666666666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 364 ILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 364 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
..++.++...|++++|.++++++...
T Consensus 675 ~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 675 RRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 66666677777777777777766654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.9e-20 Score=177.05 Aligned_cols=382 Identities=8% Similarity=-0.009 Sum_probs=291.2
Q ss_pred cccCCcchhHHhhcccCC---cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHH
Q 038550 3 AKSSRPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKE 79 (423)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 79 (423)
...|+.++|+.++.+... .+...+..+...+...|++++|.++|++..+.. +.+...+..+...+...|++++|..
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~ 104 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALV 104 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 357999999999988764 344568999999999999999999999988753 3345667788888999999999999
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCC
Q 038550 80 IHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMK 155 (423)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 155 (423)
.++++++.. +.+.. +..+..++...|+.++|...+ ...+.+...+..+...+...+..+.|+..+++... .
T Consensus 105 ~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~ 179 (765)
T PRK10049 105 KAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---T 179 (765)
T ss_pred HHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---C
Confidence 999999874 44556 888889999999999999999 44455677777888888889999999998887654 2
Q ss_pred Cch------hhHHHHHHHH-----HhHhhH---HhhhHHHHHHHHh-ccCcchH-HH-HH---HHHHHHhcCCHHHHHHH
Q 038550 156 HDV------VSFMGAISAC-----ANLAAI---KQGKEIHGVTIRK-HLHTHLF-VA-NS---ILDFYTRSGRIDLANKI 215 (423)
Q Consensus 156 ~~~------~~~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~-~~---l~~~~~~~~~~~~A~~~ 215 (423)
|+. .....++... ...+++ ++|...++.+.+. ...|+.. .+ .. .+.++...|++++|+..
T Consensus 180 p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~ 259 (765)
T PRK10049 180 PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISE 259 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 321 0111122222 122334 7788888888764 2222221 11 11 13345677999999999
Q ss_pred hccCCCCC---h-hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 038550 216 FDCLPVKD---S-ASWNTLILGYGMLGEVDTAINLFEAMREDGVGY---DPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288 (423)
Q Consensus 216 ~~~~~~~~---~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 288 (423)
|+.+...+ + .....+...|...|++++|+..|+++.+..... .......+..++...|++++|..+++.+...
T Consensus 260 ~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 260 YQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN 339 (765)
T ss_pred HHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Confidence 99987532 1 122235678999999999999999987653211 1345666777889999999999999999875
Q ss_pred CC-----------CCC---hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 289 SV-----------KPT---EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHL 352 (423)
Q Consensus 289 ~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 352 (423)
.. .|+ ...+..+...+...|++++|++.++++ ...| +...+..+...+...|++++|+..++++
T Consensus 340 ~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~a 419 (765)
T PRK10049 340 SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKA 419 (765)
T ss_pred CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 21 122 224456778889999999999999998 4455 6778889999999999999999999999
Q ss_pred HhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 353 FMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 353 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
.+..|+++.++..++..+...|++++|+.+++++.+..
T Consensus 420 l~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 420 EVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999998754
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-18 Score=163.69 Aligned_cols=365 Identities=10% Similarity=-0.072 Sum_probs=264.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 038550 25 SWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYA 104 (423)
Q Consensus 25 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 104 (423)
.+......+.+.|++++|++.|++.+.. .|+...|..+..++.+.|++++|+..++..++.. +.+...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3556677889999999999999998864 5788889999999999999999999999999875 445678888999999
Q ss_pred hcCChHHHHHHhch---hcC-CcchHHHHHHHHhcCCChhhHHHHHHHHHhcC---------------------------
Q 038550 105 KCGCLNLAQNVFNI---SFR-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLG--------------------------- 153 (423)
Q Consensus 105 ~~g~~~~a~~~~~~---~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--------------------------- 153 (423)
..|++++|+..|.. ..+ +......++..+.. ..+........+..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLE 281 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhh
Confidence 99999999887721 111 11111111111111 01111111111110
Q ss_pred ----CCCch-hhHHHHHHH---HHhHhhHHhhhHHHHHHHHhc--cCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC--
Q 038550 154 ----MKHDV-VSFMGAISA---CANLAAIKQGKEIHGVTIRKH--LHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-- 221 (423)
Q Consensus 154 ----~~~~~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-- 221 (423)
..++. ..+..+... ....+++++|...++.....+ .+.....+..+...+...|++++|...|++...
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 00100 011111110 122367889999999998865 223456677788889999999999999998753
Q ss_pred C-ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHH
Q 038550 222 K-DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300 (423)
Q Consensus 222 ~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 300 (423)
| +...|..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~l 439 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQL 439 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHH
Confidence 3 45678888899999999999999999998864 2367889999999999999999999999999864 4467778888
Q ss_pred HHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHH-------HHHHHH
Q 038550 301 VDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL-------LSNMYA 371 (423)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-------l~~~~~ 371 (423)
..++.+.|++++|+..|++. ...| +...++.+...+...|++++|+..|+++.+..|.+...+.. ....+.
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 89999999999999999987 4455 57788999999999999999999999999998875443221 122334
Q ss_pred hcCChhHHHHHHHHHHhccccCCCCCccc
Q 038550 372 EAGKWDEASKVRELMKSREAKKNPGCSWV 400 (423)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 400 (423)
..|++++|.+++++..+.. |+....+.
T Consensus 520 ~~~~~~eA~~~~~kAl~l~--p~~~~a~~ 546 (615)
T TIGR00990 520 WKQDFIEAENLCEKALIID--PECDIAVA 546 (615)
T ss_pred HhhhHHHHHHHHHHHHhcC--CCcHHHHH
Confidence 4799999999999987653 44433333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.7e-18 Score=161.12 Aligned_cols=386 Identities=10% Similarity=-0.002 Sum_probs=284.6
Q ss_pred ccccCCcchhHHhhcccCC--cChh-hHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHH
Q 038550 2 YAKSSRPAEASYLFHNIAE--KNIV-SWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGK 78 (423)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 78 (423)
..|.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++.... .+........+...+...|++++|.
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3689999999999999876 4431 2338888889999999999999998821 1112223333355788889999999
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh-chh--cCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCC
Q 038550 79 EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NIS--FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMK 155 (423)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 155 (423)
++++++++.. +.++..+..++..+...++.++|++.+ +.. .|+...+..++..+...++..+|++.++++.+.. +
T Consensus 123 ely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P 200 (822)
T PRK14574 123 ALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-P 200 (822)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-C
Confidence 9999999886 445677778889999999999999999 332 3343444344444444566666999999999864 3
Q ss_pred CchhhHHHHHHHHHhHhhHHhhhHH------------------------------------------------HHHHHH-
Q 038550 156 HDVVSFMGAISACANLAAIKQGKEI------------------------------------------------HGVTIR- 186 (423)
Q Consensus 156 ~~~~~~~~ll~~~~~~~~~~~a~~~------------------------------------------------~~~~~~- 186 (423)
-+...+..+..++.+.|-...|.++ ++.+..
T Consensus 201 ~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~ 280 (822)
T PRK14574 201 TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTR 280 (822)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhh
Confidence 3555555666555554433332222 222222
Q ss_pred hccCcch-HHH-H---HHHHHHHhcCCHHHHHHHhccCCCC----ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcC---
Q 038550 187 KHLHTHL-FVA-N---SILDFYTRSGRIDLANKIFDCLPVK----DSASWNTLILGYGMLGEVDTAINLFEAMREDG--- 254 (423)
Q Consensus 187 ~~~~~~~-~~~-~---~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--- 254 (423)
.+..|.. ..| . -.+-++...|+..++++.|+.+..+ ...+-..+..+|...+++++|..+++.+....
T Consensus 281 ~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~ 360 (822)
T PRK14574 281 WGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKT 360 (822)
T ss_pred ccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc
Confidence 1111211 111 1 2345677889999999999999843 34566778899999999999999999987643
Q ss_pred --CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-----------CCC---hhhHHHHHHHHHhcCChHHHHHHHh
Q 038550 255 --VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV-----------KPT---EMHYACMVDLLGRAGLMEDAVKLIK 318 (423)
Q Consensus 255 --~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (423)
..++......|..++...+++++|..+++.+.+... .|| ...+..++..+...|+..+|++.++
T Consensus 361 ~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le 440 (822)
T PRK14574 361 FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLE 440 (822)
T ss_pred cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 122444467889999999999999999999998411 122 1234456777889999999999999
Q ss_pred hC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 319 NL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 319 ~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
++ ...| |......+...+...|.+.+|+..++.+....|++..+....+..+...|++.+|..+.++..+..
T Consensus 441 ~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 441 DLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 98 4556 888999999999999999999999999999999999999999999999999999999998876654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.8e-18 Score=165.35 Aligned_cols=364 Identities=10% Similarity=-0.022 Sum_probs=271.7
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHH
Q 038550 22 NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTD 101 (423)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 101 (423)
+..-..-.+......|+.++|++++.+..... +.+...+..+..++...|++++|..++++.++.. +.+...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34444556677888999999999999998632 3455578999999999999999999999998774 455677788889
Q ss_pred HHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhh
Q 038550 102 MYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177 (423)
Q Consensus 102 ~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 177 (423)
++...|++++|...+ ...+.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+..+.|
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHH
Confidence 999999999999999 33455666 8889999999999999999999999864 33555666777788888899999
Q ss_pred hHHHHHHHHhccCcch------HHHHHHHHHHH-----hcCCH---HHHHHHhccCCC---CChh---hH----HHHHHH
Q 038550 178 KEIHGVTIRKHLHTHL------FVANSILDFYT-----RSGRI---DLANKIFDCLPV---KDSA---SW----NTLILG 233 (423)
Q Consensus 178 ~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~A~~~~~~~~~---~~~~---~~----~~li~~ 233 (423)
...++.+.. .|+. .....++.... ..+++ ++|++.++.+.. .++. .+ ...+..
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 988876554 1111 01112222222 22234 677777776651 1211 11 111334
Q ss_pred HhccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCC
Q 038550 234 YGMLGEVDTAINLFEAMREDGVG-YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP---TEMHYACMVDLLGRAGL 309 (423)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 309 (423)
+...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|...|+++....... .......+..++...|+
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 56779999999999999987532 332 22335678999999999999999988653111 12446667778899999
Q ss_pred hHHHHHHHhhC-CCCC-------------C---HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038550 310 MEDAVKLIKNL-PVEP-------------D---ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAE 372 (423)
Q Consensus 310 ~~~a~~~~~~~-~~~~-------------~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 372 (423)
+++|.+.++++ ...| + ...+..+...+...|+.++|+.+++++....|.++..+..++..+..
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 99999999887 2223 2 12445667788999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhccccCCC
Q 038550 373 AGKWDEASKVRELMKSREAKKNP 395 (423)
Q Consensus 373 ~g~~~~A~~~~~~m~~~~~~~~~ 395 (423)
.|++++|++.+++..+.. |+.
T Consensus 406 ~g~~~~A~~~l~~al~l~--Pd~ 426 (765)
T PRK10049 406 RGWPRAAENELKKAEVLE--PRN 426 (765)
T ss_pred cCCHHHHHHHHHHHHhhC--CCC
Confidence 999999999999988754 554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-15 Score=147.38 Aligned_cols=375 Identities=10% Similarity=-0.011 Sum_probs=254.4
Q ss_pred chhHHhhcccCCcChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCC-CCchhHHHH-----------------------
Q 038550 9 AEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF-PNSVTLTNV----------------------- 64 (423)
Q Consensus 9 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l----------------------- 64 (423)
++|..+++...+.+...+..+...+.+.|+.++|.++++++...... |...+|.-+
T Consensus 233 ~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~ 312 (987)
T PRK09782 233 DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNR 312 (987)
T ss_pred HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHH
Confidence 66666666544467778888888888888888888888887654222 332222221
Q ss_pred -------HHHhhcCCCCccHHHH-----------------------------HHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 038550 65 -------LPACARGHFLRPGKEI-----------------------------HARIIRKGLNFDLFLTNALTDMYAKCGC 108 (423)
Q Consensus 65 -------~~~~~~~~~~~~a~~~-----------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 108 (423)
+..+.+.++++.++++ ++.|.+.. +-+....--+.-.....|+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~ 391 (987)
T PRK09782 313 QYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQ 391 (987)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccc
Confidence 1222233333322222 22222110 1122222233334566788
Q ss_pred hHHHHHHhch-h--cCC----cchHHHHHHHHhcCCC---hhhHHHH----------------------HHHHHhc-CC-
Q 038550 109 LNLAQNVFNI-S--FRD----EVSYNILIVGYSQTSD---CSESLSL----------------------FSEMRLL-GM- 154 (423)
Q Consensus 109 ~~~a~~~~~~-~--~~~----~~~~~~l~~~~~~~~~---~~~a~~~----------------------~~~m~~~-~~- 154 (423)
.++|.++|+. . .++ .....-++..|.+.+. ..++..+ +...... +.
T Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 471 (987)
T PRK09782 392 SREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM 471 (987)
T ss_pred HHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC
Confidence 8888888821 1 122 2234466677766655 2333222 1111111 11
Q ss_pred CC--chhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC--CChhhHHHH
Q 038550 155 KH--DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV--KDSASWNTL 230 (423)
Q Consensus 155 ~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l 230 (423)
++ +...|..+..++.. ++.++|...+....... |+......+...+...|++++|...|+++.. ++...+..+
T Consensus 472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~l 548 (987)
T PRK09782 472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAA 548 (987)
T ss_pred CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHH
Confidence 33 45667777766665 78888999887777654 3443333445556789999999999987652 444556677
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 038550 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310 (423)
Q Consensus 231 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 310 (423)
...+.+.|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+. .|+...+..+..++.+.|++
T Consensus 549 a~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~ 625 (987)
T PRK09782 549 ANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNV 625 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCH
Confidence 788889999999999999998764 223334444444555679999999999999885 46788888999999999999
Q ss_pred HHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 311 EDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 311 ~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
++|+..+++. ...| +...++.+..++...|+.++|+..++++.+..|.++.++..++.++...|++++|+..+++..+
T Consensus 626 deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 626 PAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999999988 5666 5667888888999999999999999999999999999999999999999999999999999876
Q ss_pred cc
Q 038550 389 RE 390 (423)
Q Consensus 389 ~~ 390 (423)
..
T Consensus 706 l~ 707 (987)
T PRK09782 706 DI 707 (987)
T ss_pred cC
Confidence 54
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-15 Score=148.48 Aligned_cols=376 Identities=10% Similarity=-0.032 Sum_probs=274.6
Q ss_pred cccCCcchhHHhhcccCCcChhhHHHHHHHH--HhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHH
Q 038550 3 AKSSRPAEASYLFHNIAEKNIVSWNAMVANF--AQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEI 80 (423)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 80 (423)
.+.++++-|.++.+.- |.... ..++.. ...+...++...+..|.+.. +-+......+.-...+.|+.++|.++
T Consensus 324 ~~~~~~~~~~~~~~~~--~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~ 398 (987)
T PRK09782 324 LKEGQYDAAQKLLATL--PANEM--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADL 398 (987)
T ss_pred HhccHHHHHHHHhcCC--CcchH--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHH
Confidence 4566777666664422 22222 223222 23366667777777776642 22555555555566778888888888
Q ss_pred HHHHHHc-C-CCCchHHHHHHHHHHHhcCC---hHHHHHH-------------------------h----chhcC--Ccc
Q 038550 81 HARIIRK-G-LNFDLFLTNALTDMYAKCGC---LNLAQNV-------------------------F----NISFR--DEV 124 (423)
Q Consensus 81 ~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~---~~~a~~~-------------------------~----~~~~~--~~~ 124 (423)
++..... + -.++....+.|+..|.+.+. ..++..+ + ...++ +..
T Consensus 399 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~ 478 (987)
T PRK09782 399 LLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAA 478 (987)
T ss_pred HHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHH
Confidence 8887652 1 12344455566777766655 2222222 1 11233 566
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHH
Q 038550 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYT 204 (423)
Q Consensus 125 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (423)
.|..+..++.. ++.++|+..+.+.... .|+......+...+...|++++|...++.+.... |+...+..+..++.
T Consensus 479 a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~--p~~~a~~~la~all 553 (987)
T PRK09782 479 AWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD--MSNEDLLAAANTAQ 553 (987)
T ss_pred HHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCcHHHHHHHHHHH
Confidence 78888888877 7888899988888764 4665554455556678999999999999876653 33344556778889
Q ss_pred hcCCHHHHHHHhccCCCCCh---hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 038550 205 RSGRIDLANKIFDCLPVKDS---ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281 (423)
Q Consensus 205 ~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 281 (423)
+.|++++|...++.....++ ..+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|...
T Consensus 554 ~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 554 AAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999987764333 23333334444569999999999999885 56788899999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 038550 282 FDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359 (423)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 359 (423)
+++..... +.+...++.+...+...|++++|+..+++. ...| +...+..+..++...|++++|+..++++.+..|.+
T Consensus 632 l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 632 LRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 99999874 456778888888999999999999999987 5566 67789999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
..+....+....+..+++.|.+.+++-...++
T Consensus 711 a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 711 ALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999999998888765443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.7e-15 Score=140.44 Aligned_cols=354 Identities=12% Similarity=0.040 Sum_probs=265.9
Q ss_pred HHHHHhCCChHHHHHHHhhchhCCCCCCch-hHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 038550 30 VANFAQNRLELKALQLVREMPIHNEFPNSV-TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC 108 (423)
Q Consensus 30 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 108 (423)
+-...+.|+++.|++.|++..+.. |+.. ....++..+...|+.++|...+++..... +........+...+...|+
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCC
Confidence 335678999999999999998764 5542 22388888888999999999999998211 2223333444668888999
Q ss_pred hHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHH
Q 038550 109 LNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184 (423)
Q Consensus 109 ~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 184 (423)
+++|+++| +..+.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|.+.++++
T Consensus 118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999 444567777888899999999999999999999875 566666644444444456665699999999
Q ss_pred HHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC--------------------------------------------
Q 038550 185 IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP-------------------------------------------- 220 (423)
Q Consensus 185 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------------------------------------------- 220 (423)
.+..+ .+...+..++.++.+.|-...|.++...-+
T Consensus 196 l~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 196 VRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 98764 344455556666666666555555444221
Q ss_pred ----C-----CCh-hh----HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 038550 221 ----V-----KDS-AS----WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ 286 (423)
Q Consensus 221 ----~-----~~~-~~----~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 286 (423)
. |.. .. .--.+-++...|++.+++..++.+...+.+.-..+-..+..+|...+++++|..+|+.+.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 0 110 11 112345677889999999999999988865455688899999999999999999999997
Q ss_pred HcC-----CCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC-C-------------CCH--h-HHHHHHHHHHhcCChhH
Q 038550 287 ADS-----VKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPV-E-------------PDA--N-IWGALLGACRIYGNVEL 344 (423)
Q Consensus 287 ~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-------------~~~--~-~~~~l~~~~~~~~~~~~ 344 (423)
... .+++......|.-+|...+++++|..+++++.- . ||+ . ....++..+...|+..+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 652 122344457888999999999999999988821 1 222 1 23445677889999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 345 GAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 345 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
|++.++.+....|.|+.+...++..+...|.+.+|++.++.....
T Consensus 435 Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 435 AQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999776654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-15 Score=126.30 Aligned_cols=347 Identities=15% Similarity=0.112 Sum_probs=199.3
Q ss_pred HhhcccCCcChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCc
Q 038550 13 YLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFD 92 (423)
Q Consensus 13 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 92 (423)
-+|+..| ++..+|..||.++++-...+.|.+++++......+.+..+||.+|.+-.- ....+++.+|....+.||
T Consensus 198 L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 198 LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPN 272 (625)
T ss_pred HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCc
Confidence 3444444 56688999999999999999999999999888888999999999987532 233889999999999999
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHh
Q 038550 93 LFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172 (423)
Q Consensus 93 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 172 (423)
..|+|+++++..+.|+++.|... |++++.+|++.|+.|...+|..+|..+++.+
T Consensus 273 l~TfNalL~c~akfg~F~~ar~a--------------------------alqil~EmKeiGVePsLsSyh~iik~f~re~ 326 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKA--------------------------ALQILGEMKEIGVEPSLSSYHLIIKNFKRES 326 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHH--------------------------HHHHHHHHHHhCCCcchhhHHHHHHHhcccC
Confidence 99999999999999998887644 4555556666666666666665555555555
Q ss_pred hHHh-hhHHHHHHHH----hcc----CcchHHHHHHHHHHHhcCCHHHHHHHhccCCC--------CC---hhhHHHHHH
Q 038550 173 AIKQ-GKEIHGVTIR----KHL----HTHLFVANSILDFYTRSGRIDLANKIFDCLPV--------KD---SASWNTLIL 232 (423)
Q Consensus 173 ~~~~-a~~~~~~~~~----~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~---~~~~~~li~ 232 (423)
+..+ +..++..+.. ... +.+...|..-+..|.+..+.+-|.++-.-+.. ++ ..-|..+..
T Consensus 327 dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~ 406 (625)
T KOG4422|consen 327 DPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFD 406 (625)
T ss_pred CchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHH
Confidence 4433 2233333322 111 11233344445555555555555544432221 11 122344445
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-Ch-
Q 038550 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG-LM- 310 (423)
Q Consensus 233 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~- 310 (423)
..|.....+.-..+|+.|.-.-+-|+..+...++.+....+.++-.-+++..++..|...+...-..++..+++.. ++
T Consensus 407 licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~ 486 (625)
T KOG4422|consen 407 LICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPL 486 (625)
T ss_pred HHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCC
Confidence 5555555555666666655554555555555566665555555555555555555554333333333333333332 11
Q ss_pred -------H-----HHHHHH-------hhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCcch--HHH
Q 038550 311 -------E-----DAVKLI-------KNL-PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK---PQHCGY--YIL 365 (423)
Q Consensus 311 -------~-----~a~~~~-------~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~--~~~ 365 (423)
. -|..++ .++ ..+......+.+.-.+.+.|..++|-+++....+.+ |..|.. ..-
T Consensus 487 tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~E 566 (625)
T KOG4422|consen 487 TPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAE 566 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHH
Confidence 0 001111 111 123344455555555666666666666666664432 332221 223
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 366 LSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 366 l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
+.+.-.+.+....|..+++-|...+
T Consensus 567 l~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 567 LMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 3344445556666666666665444
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.7e-15 Score=135.53 Aligned_cols=317 Identities=16% Similarity=0.145 Sum_probs=253.7
Q ss_pred hhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHH
Q 038550 68 CARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESL 143 (423)
Q Consensus 68 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~ 143 (423)
+.-.|++++|.+++.++++.. +.....|..|..+|-..|+.+++...+ ...+.|...|..+.....+.|.++.|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 334499999999999999886 667788999999999999999998887 566778889999999999999999999
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHH----HHHHHHHhcCCHHHHHHHhccC
Q 038550 144 SLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVAN----SILDFYTRSGRIDLANKIFDCL 219 (423)
Q Consensus 144 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~A~~~~~~~ 219 (423)
-.|.+..+.. +++...+..-...|.+.|+...|...+.++....++.+..-+. ..++.|...++-+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999875 6666666777888889999999999999998876644444333 3456677777778888888766
Q ss_pred CC-----CChhhHHHHHHHHhccCCHHHHHHHHHHHHHcC---------------------------CCCCHHHHHHHHH
Q 038550 220 PV-----KDSASWNTLILGYGMLGEVDTAINLFEAMREDG---------------------------VGYDPVSYIAILT 267 (423)
Q Consensus 220 ~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---------------------------~~p~~~~~~~ll~ 267 (423)
.. -+...++.++..+.+...++.|......+.... +.++... ..+.-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhh
Confidence 53 245678888888999999999998888876621 1222222 12333
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCChHHHHHHHhhCCC---CCCHhHHHHHHHHHHhcCCh
Q 038550 268 ACSHGGLVEKGKKYFDEMQADSVK--PTEMHYACMVDLLGRAGLMEDAVKLIKNLPV---EPDANIWGALLGACRIYGNV 342 (423)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 342 (423)
++.+.+..+....+...+....+. -+...|.-+..+|...|++.+|+.+|..+-. ..+...|-.+..+|...|.+
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 455666666666666666666533 3466788899999999999999999999822 23577899999999999999
Q ss_pred hHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 038550 343 ELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387 (423)
Q Consensus 343 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 387 (423)
+.|+..|+.++...|++..+...|...+.+.|+.++|.+.+..+.
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999886
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-15 Score=138.19 Aligned_cols=378 Identities=13% Similarity=0.076 Sum_probs=175.2
Q ss_pred cCCcchhHHhhcccCCcC------hhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhH--HHHHHHhhcCCCCcc
Q 038550 5 SSRPAEASYLFHNIAEKN------IVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTL--TNVLPACARGHFLRP 76 (423)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~~~~~~ 76 (423)
.|+++.++.+.+.+.+.+ ..+|-.+.++|-..|++++|...|.+..+.. |+..++ .-+.+.+.+.|+++.
T Consensus 283 K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~ 360 (1018)
T KOG2002|consen 283 KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEE 360 (1018)
T ss_pred cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHH
Confidence 355555555555544311 2345556666666666666666665555432 333322 234555666666666
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcC----ChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHH
Q 038550 77 GKEIHARIIRKGLNFDLFLTNALTDMYAKCG----CLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148 (423)
Q Consensus 77 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 148 (423)
+...|+...... +.+..+...|...|+..+ ..+.|..++ ...+.|...|-.+...+-...-+.. +.+|..
T Consensus 361 s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~ 438 (1018)
T KOG2002|consen 361 SKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGN 438 (1018)
T ss_pred HHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHH
Confidence 666666666552 334455555555555553 334444444 2223355555555555544433333 444443
Q ss_pred HH----hcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHh---ccCcch------HHHHHHHHHHHhcCCHHHHHHH
Q 038550 149 MR----LLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK---HLHTHL------FVANSILDFYTRSGRIDLANKI 215 (423)
Q Consensus 149 m~----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~A~~~ 215 (423)
.. ..+-.+.+...|.+.......|+++.|...|...... ...++. .+--.+..++-..++.+.|.+.
T Consensus 439 A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~ 518 (1018)
T KOG2002|consen 439 ALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEM 518 (1018)
T ss_pred HHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHH
Confidence 32 3333455556666666666666666666666655543 111111 1111233444444555555555
Q ss_pred hccCCCCCh---hhHHHHHHHHhccCCHHHHHHHHHHHHHcC-C----------------------------------CC
Q 038550 216 FDCLPVKDS---ASWNTLILGYGMLGEVDTAINLFEAMREDG-V----------------------------------GY 257 (423)
Q Consensus 216 ~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~----------------------------------~p 257 (423)
|..+.+..+ ..|.-++......+...+|..++.+..... - .+
T Consensus 519 Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~ 598 (1018)
T KOG2002|consen 519 YKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKT 598 (1018)
T ss_pred HHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCC
Confidence 554442111 111111111111234444444444443321 1 12
Q ss_pred CHHHHHHHHHHHhc------------cCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC--CC
Q 038550 258 DPVSYIAILTACSH------------GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP--VE 323 (423)
Q Consensus 258 ~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~ 323 (423)
|..+...|.+.|.. .+..++|.++|.+.++.. +-|...-|.+.-+++..|++.+|..+|.+.. ..
T Consensus 599 D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 599 DAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred chhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 22233333332221 122344455555444432 3344444444555555555555555555441 12
Q ss_pred CCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 038550 324 PDANIWGALLGACRIYGNVELGAWAAEHLFMLK--PQHCGYYILLSNMYAEAGKWDEASKVRELMK 387 (423)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 387 (423)
-...+|..+.+.|...|++..|+++|+...+.. ..++.+...|++++.+.|.+.+|.+.+....
T Consensus 678 ~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 678 DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 233444455555555555555555555554432 2233444455555555555555555444443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-15 Score=125.64 Aligned_cols=352 Identities=17% Similarity=0.179 Sum_probs=236.0
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHh--hcCCCCccH-HHHHHHHHHcCCCCchHHHHHH
Q 038550 23 IVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPAC--ARGHFLRPG-KEIHARIIRKGLNFDLFLTNAL 99 (423)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~--~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l 99 (423)
+.+=|.|+.. ..+|.+..+.-+++.|.+.|++.+...-..++... ....++.-+ ++.|-.|...| +.+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 4455555543 55677888888888888888777766655555442 222222222 22333344333 2233333
Q ss_pred HHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhH
Q 038550 100 TDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179 (423)
Q Consensus 100 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 179 (423)
+.|.+.+ -+|+..++...+|.+||.++|+-...+.|.+++++-.....+.+..+||.+|.+-+-. ...+
T Consensus 191 -----K~G~vAd--L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~ 259 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKK 259 (625)
T ss_pred -----ccccHHH--HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHH
Confidence 3455444 3447778888899999999999888899999998888877788888888888765432 2267
Q ss_pred HHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH
Q 038550 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP 259 (423)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 259 (423)
++.+|.+..+.|+..|+|+++.+..+.|+++.|. ..|.+++.+|++.|+.|..
T Consensus 260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar---------------------------~aalqil~EmKeiGVePsL 312 (625)
T KOG4422|consen 260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDAR---------------------------KAALQILGEMKEIGVEPSL 312 (625)
T ss_pred HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHH---------------------------HHHHHHHHHHHHhCCCcch
Confidence 7888888888888888888888877777776553 3456788888888888888
Q ss_pred HHHHHHHHHHhccCcHHH-HHHHHHHHHHc----CCCC----ChhhHHHHHHHHHhcCChHHHHHHHhhC--C-----CC
Q 038550 260 VSYIAILTACSHGGLVEK-GKKYFDEMQAD----SVKP----TEMHYACMVDLLGRAGLMEDAVKLIKNL--P-----VE 323 (423)
Q Consensus 260 ~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~----~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~-----~~ 323 (423)
.+|..+|..+++.++..+ +..++.++... .++| +...|..-+..|.+..+.+-|.++-.-+ | +.
T Consensus 313 sSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig 392 (625)
T KOG4422|consen 313 SSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIG 392 (625)
T ss_pred hhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcC
Confidence 888888888888777643 44444444432 2222 3344556667777777877777765433 1 22
Q ss_pred CC---HhHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCCCCcc
Q 038550 324 PD---ANIWGALLGACRIYGNVELGAWAAEHLFML-KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSW 399 (423)
Q Consensus 324 ~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 399 (423)
|+ ..-|..+....++....+.-...|+.+.-. --+++.+...+.++....|+++-.-+++.+++..|... .
T Consensus 393 ~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~-----r 467 (625)
T KOG4422|consen 393 PDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTF-----R 467 (625)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhh-----h
Confidence 32 223555666667777777777777776542 23456677777788888888888888898888877532 2
Q ss_pred cccccceeeeeecCCCCCCCCCC
Q 038550 400 VQTRDEVQDFVVNDRMKTFTPGP 422 (423)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~ 422 (423)
..+..++.....++..||.|++.
T Consensus 468 ~~l~eeil~~L~~~k~hp~tp~r 490 (625)
T KOG4422|consen 468 SDLREEILMLLARDKLHPLTPER 490 (625)
T ss_pred HHHHHHHHHHHhcCCCCCCChHH
Confidence 44566677778888888888764
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-15 Score=127.42 Aligned_cols=369 Identities=13% Similarity=0.061 Sum_probs=254.2
Q ss_pred ccccCCcchhHHhhcccCC--cC------hhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCC
Q 038550 2 YAKSSRPAEASYLFHNIAE--KN------IVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF 73 (423)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~--~~------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 73 (423)
+.|...+..|+++++-... |+ +...+.+.-.+.+.|.++.|+..|+...+. .|+-.+-..|+-++.--|+
T Consensus 247 ~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d 324 (840)
T KOG2003|consen 247 HFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGD 324 (840)
T ss_pred eeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCc
Confidence 3566778888887765432 22 335566666788999999999999988875 3777665555555566788
Q ss_pred CccHHHHHHHHHHcCCC------------CchHHHHHHH-----HHHHhcCChHHHHHHh----chhcC----Ccch---
Q 038550 74 LRPGKEIHARIIRKGLN------------FDLFLTNALT-----DMYAKCGCLNLAQNVF----NISFR----DEVS--- 125 (423)
Q Consensus 74 ~~~a~~~~~~~~~~~~~------------~~~~~~~~l~-----~~~~~~g~~~~a~~~~----~~~~~----~~~~--- 125 (423)
.++..+.|..|+..... |+....+..+ .-+-+.+ -..|++.. ....| +-..
T Consensus 325 ~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~-ka~aek~i~ta~kiiapvi~~~fa~g~d 403 (840)
T KOG2003|consen 325 AEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKEN-KADAEKAIITAAKIIAPVIAPDFAAGCD 403 (840)
T ss_pred HHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhh-hhhHHHHHHHHHHHhccccccchhcccH
Confidence 88999999988765332 2322222222 1121111 11222222 22211 1100
Q ss_pred H----------H--------HHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHH--------------------
Q 038550 126 Y----------N--------ILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISA-------------------- 167 (423)
Q Consensus 126 ~----------~--------~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-------------------- 167 (423)
| . .-...+.+.|+++.|+++++-+.+..-+.-+..-+.+...
T Consensus 404 wcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~al 483 (840)
T KOG2003|consen 404 WCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIAL 483 (840)
T ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHh
Confidence 1 0 1134578899999999998877654322222221111111
Q ss_pred ----------------HHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHH
Q 038550 168 ----------------CANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWN 228 (423)
Q Consensus 168 ----------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~ 228 (423)
....|++++|...+.+.+.....-....|| +.-.+-..|++++|++.|-++. ..+..+..
T Consensus 484 n~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~ 562 (840)
T KOG2003|consen 484 NIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLV 562 (840)
T ss_pred cccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHH
Confidence 112467777777777777665544444454 3344667788888888886553 45677777
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038550 229 TLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308 (423)
Q Consensus 229 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 308 (423)
.+...|-...++.+|++++-+.... ++.|+.....|...|-+.|+-.+|.+.+-+--+. ++-+..+...|...|....
T Consensus 563 qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtq 640 (840)
T KOG2003|consen 563 QIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQ 640 (840)
T ss_pred HHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhH
Confidence 7788888888899999888776654 4557888999999999999999999887665443 6778899999999999999
Q ss_pred ChHHHHHHHhhC-CCCCCHhHHHHHHHH-HHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 038550 309 LMEDAVKLIKNL-PVEPDANIWGALLGA-CRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKW 376 (423)
Q Consensus 309 ~~~~a~~~~~~~-~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 376 (423)
-+++++.+|++. -+.|+..-|..++.. +.+.|++++|.++|+...+..|.+......|++.+...|..
T Consensus 641 f~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 641 FSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 999999999998 578999999998865 46789999999999999999999999999999988877753
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-17 Score=143.36 Aligned_cols=257 Identities=17% Similarity=0.137 Sum_probs=114.0
Q ss_pred HHHHHhcCCChhhHHHHHHHHHhcCCCCchhhH-HHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcC
Q 038550 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF-MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207 (423)
Q Consensus 129 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 207 (423)
+...+.+.|++++|++++++.....-+|+...| ..+...+...++.+.|...++.+...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 355666677777777777554433213433333 33444455667777777777777765433 44455556665 6778
Q ss_pred CHHHHHHHhccCC--CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 038550 208 RIDLANKIFDCLP--VKDSASWNTLILGYGMLGEVDTAINLFEAMREDG-VGYDPVSYIAILTACSHGGLVEKGKKYFDE 284 (423)
Q Consensus 208 ~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 284 (423)
++++|.++++..- .+++..+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|...+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888776653 3456667778888899999999999999987543 345777888888999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcch
Q 038550 285 MQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL--PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGY 362 (423)
Q Consensus 285 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 362 (423)
..+.. |.|......++..+...|+.+++.++++.. ....|+..+..+..++...|+.++|...+++..+..|.|+..
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 99874 445778888999999999999988888776 223466788899999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 363 YILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 363 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
...++.++...|+.++|.++.++...
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999887653
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.2e-14 Score=119.63 Aligned_cols=216 Identities=16% Similarity=0.114 Sum_probs=176.1
Q ss_pred HhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHH
Q 038550 169 ANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAIN 245 (423)
Q Consensus 169 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~ 245 (423)
.-.|+.-.+..-|+..++....++. .|-.+..+|....+.++-...|.... +.++.+|..-.+.+.-.++++.|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 3457778888888888887655543 26667788999999999999998665 4577888888888888899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC
Q 038550 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP 324 (423)
Q Consensus 246 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~ 324 (423)
=|++.+..... +...|..+..+..+.+++++++..|++.+++ +|-.+.+|+.....+...++++.|.+.|+.. .+.|
T Consensus 416 DF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 416 DFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99999885322 5567777777888999999999999999987 6777899999999999999999999999876 3333
Q ss_pred C---------HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 325 D---------ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 325 ~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
. +.+...++.. .-.+++..|+.+++++.+++|....++..|+....+.|+.++|+++|++-..
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3 2233333322 2448999999999999999999999999999999999999999999998643
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-12 Score=111.91 Aligned_cols=383 Identities=12% Similarity=0.072 Sum_probs=293.5
Q ss_pred cCCcchhHHhhcccCC---cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCc-hhHHHHHHHhhcCCCCccHHHH
Q 038550 5 SSRPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS-VTLTNVLPACARGHFLRPGKEI 80 (423)
Q Consensus 5 ~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~ 80 (423)
++++..|.++|++... .+...|-.-+..=.++..+..|..+|+..... -|.+ ..|-..+..=-..|++..|.++
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4567889999999876 67778888889999999999999999998764 3443 3444555555567999999999
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh---chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCc
Q 038550 81 HARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF---NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHD 157 (423)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 157 (423)
|+.-.+- .|+...|++.++.-.+-+.++.|..++ -+..|++.+|--....=.+.|....+..+|....+. -.|
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~ 239 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGD 239 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhh
Confidence 9988755 899999999999999999999999999 456789999999999999999999999999988763 222
Q ss_pred hh----hHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcc-hHHHHHHHHHHHhcCCHHHHHHHh---c-----cCCC---
Q 038550 158 VV----SFMGAISACANLAAIKQGKEIHGVTIRKHLHTH-LFVANSILDFYTRSGRIDLANKIF---D-----CLPV--- 221 (423)
Q Consensus 158 ~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~---~-----~~~~--- 221 (423)
.. .+.+....-.+...++.|.-+|+..+..-+... ...|......--+-|+.....+.. + .+..
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 22 333333333456788889999988887543322 445555555555556655444433 2 2222
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---hccCcHHHHHHHHHHHHHcCCC
Q 038550 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP-------VSYIAILTAC---SHGGLVEKGKKYFDEMQADSVK 291 (423)
Q Consensus 222 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~ 291 (423)
-|-.+|--.+..-...|+.+...++|++.... ++|-. ..|..+=-+| ....+.+.+.++|+..++. +|
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IP 397 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IP 397 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cC
Confidence 25567777777777889999999999999875 55532 1222222222 3467899999999999985 66
Q ss_pred CChhhHHHHHHHH----HhcCChHHHHHHHhhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 038550 292 PTEMHYACMVDLL----GRAGLMEDAVKLIKNL-PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILL 366 (423)
Q Consensus 292 ~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 366 (423)
....||..+--.| .++.++..|.+++... |..|-..+|...|..-.+.+.++....+|++.++.+|.+..+|...
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKY 477 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHH
Confidence 6777777765555 4788999999999877 8899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccccCCC
Q 038550 367 SNMYAEAGKWDEASKVRELMKSREAKKNP 395 (423)
Q Consensus 367 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 395 (423)
+..-...|+.+.|..+|+-..+....-.|
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmp 506 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMP 506 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccH
Confidence 98888999999999999888776543333
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.3e-13 Score=119.89 Aligned_cols=246 Identities=11% Similarity=0.016 Sum_probs=124.5
Q ss_pred hcCCChhhHHHHHHHHHhcCCCCchhhHH--HHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHH
Q 038550 134 SQTSDCSESLSLFSEMRLLGMKHDVVSFM--GAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDL 211 (423)
Q Consensus 134 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 211 (423)
.+.|+++.|...+.++.+. .|+...+. .....+...|+++.|...++.+.+..+ .+......+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHH
Confidence 4444444444444444431 23322111 112333444444444444444444332 123333444444444455555
Q ss_pred HHHHhccCCCC---Ch--------hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 038550 212 ANKIFDCLPVK---DS--------ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280 (423)
Q Consensus 212 A~~~~~~~~~~---~~--------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 280 (423)
|.+++..+.+. +. .+|..++.......+.+...++++.+.+. .+.++.....+..++...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 54444443321 11 12222233333334445555555554332 23355566666666777777777777
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 038550 281 YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358 (423)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 358 (423)
++++..+. +|+.... ++.+....++.+++++..++. ...| |+..+..+...+...+++++|.+.|+.+.+..|+
T Consensus 285 ~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 285 IILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred HHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 77666653 3333211 223333446666676666665 3344 4445666666777777777777777777776666
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 359 HCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 359 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
+ ..+..++.++.+.|+.++|.+++++-..
T Consensus 361 ~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 361 A-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred H-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4 3345666677777777777777765543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.1e-12 Score=113.14 Aligned_cols=371 Identities=9% Similarity=0.034 Sum_probs=290.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 038550 25 SWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYA 104 (423)
Q Consensus 25 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 104 (423)
+|+.-...|.+.+.++-|..+|...++. .+-+...|......--..|..++...++++++..- +-....|-....-+.
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHH
Confidence 4555556666677777777777776664 23344566666666666788888888888888763 334455666667777
Q ss_pred hcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHH
Q 038550 105 KCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180 (423)
Q Consensus 105 ~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 180 (423)
..|++..|..++ +..+.+...|-.-+..-....+++.|..+|.+... ..|+...|..-+...--.+..++|.++
T Consensus 596 ~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 889999998887 44456777888888888899999999999988876 456777776666666677889999999
Q ss_pred HHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC
Q 038550 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY 257 (423)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 257 (423)
+++.++.- +.-...|-.+.+.+-+.++.+.|...|..-. +..+..|-.+...=-+.|++-+|..++++.+-.+..
T Consensus 674 lEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk- 751 (913)
T KOG0495|consen 674 LEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK- 751 (913)
T ss_pred HHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-
Confidence 98887763 2335566777888888999999998887654 235567888877777888999999999998877543
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHH
Q 038550 258 DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACR 337 (423)
Q Consensus 258 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~ 337 (423)
+...|...|..-.+.|..+.|..++.+..+. ++-+...|..-|....+.++-.+..+.+++. ..|+.+...+...+.
T Consensus 752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw 828 (913)
T KOG0495|consen 752 NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFW 828 (913)
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHH
Confidence 7788999999999999999999999888875 5667778888888888888877777777776 356677777888889
Q ss_pred hcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCCCCcccccccce
Q 038550 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTRDEV 406 (423)
Q Consensus 338 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 406 (423)
...+++.|.+-|++++..+|++..+|..+...+.+.|.-++-.+++.+.... .|.-+..|..++..+
T Consensus 829 ~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSKDI 895 (913)
T ss_pred HHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhhhH
Confidence 9999999999999999999999999999999999999999999999988764 577788888776554
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-13 Score=123.21 Aligned_cols=278 Identities=12% Similarity=-0.009 Sum_probs=201.3
Q ss_pred CCCCccHHHHHHHHHHcCCCCchHHHHHH-HHHHHhcCChHHHHHHh-c--hhcCCcchHH--HHHHHHhcCCChhhHHH
Q 038550 71 GHFLRPGKEIHARIIRKGLNFDLFLTNAL-TDMYAKCGCLNLAQNVF-N--ISFRDEVSYN--ILIVGYSQTSDCSESLS 144 (423)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~-~--~~~~~~~~~~--~l~~~~~~~~~~~~a~~ 144 (423)
.|+++.|.+.+....+.. +++..+..+ .....+.|+++.|...+ + ...|+..... .....+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 577777776666554432 223333223 33346777777777777 2 1223332222 23567777888888888
Q ss_pred HHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcch-------HHHHHHHHHHHhcCCHHHHHHHhc
Q 038550 145 LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHL-------FVANSILDFYTRSGRIDLANKIFD 217 (423)
Q Consensus 145 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~ 217 (423)
.++++.+.. +-+......+...+.+.|++++|..++..+.+.+..++. ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887764 445667777788888888888888888888876654322 233344444455566777888888
Q ss_pred cCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCh
Q 038550 218 CLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294 (423)
Q Consensus 218 ~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 294 (423)
.++ +.++.....+...+...|+.++|..++++..+. +|+.... ++.+....++.+++.+..+...+.. +-|.
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~ 328 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTP 328 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCH
Confidence 776 347788889999999999999999999998874 4555322 2344456699999999999998873 5566
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 038550 295 MHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356 (423)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 356 (423)
..+..+...+.+.+++++|.+.|++. ...|+...+..+...+.+.|+.++|..++++...+-
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 77888999999999999999999988 778999999999999999999999999999987653
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=9e-13 Score=107.60 Aligned_cols=312 Identities=10% Similarity=0.078 Sum_probs=205.3
Q ss_pred CCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh-chhc-CCc------chHHHHHHHHhcCCChhhHH
Q 038550 72 HFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISF-RDE------VSYNILIVGYSQTSDCSESL 143 (423)
Q Consensus 72 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~-~~~------~~~~~l~~~~~~~~~~~~a~ 143 (423)
++.++|...|-+|.+.. +-+..+.-+|.+.|-+.|.+|.|+++- .... ||. .+.-.|..-|...|-+|.|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45667777777776543 333445556666666667777666666 2222 221 12234555666677777777
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCC
Q 038550 144 SLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD 223 (423)
Q Consensus 144 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 223 (423)
.+|..+.+.| ..-......++..|....+|++|+.+-+++.+.+..+... -+...
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~---eIAqf--------------------- 182 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV---EIAQF--------------------- 182 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh---HHHHH---------------------
Confidence 7777776544 2233455566666666666666666666666554433221 12222
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038550 224 SASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL 303 (423)
Q Consensus 224 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 303 (423)
|-.+...+....+.+.|..++.+..+.+.+ .+..-..+.......|+++.|.+.++...+.+..--..+...|..+
T Consensus 183 ---yCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~ 258 (389)
T COG2956 183 ---YCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYEC 258 (389)
T ss_pred ---HHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 333455556667888888888888876432 3344455566788889999999999988887655556778888899
Q ss_pred HHhcCChHHHHHHHhhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH---HhcCChhHH
Q 038550 304 LGRAGLMEDAVKLIKNL-PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMY---AEAGKWDEA 379 (423)
Q Consensus 304 ~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A 379 (423)
|...|++++...++.++ ...+....-..+........-.+.|...+.+-....|.-..++ .++... ...|+..+-
T Consensus 259 Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~-rl~~~~l~daeeg~~k~s 337 (389)
T COG2956 259 YAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFH-RLMDYHLADAEEGRAKES 337 (389)
T ss_pred HHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHH-HHHHhhhccccccchhhh
Confidence 99999999998888876 4556666666666655566667777777777777777644444 444433 234668888
Q ss_pred HHHHHHHHhccccCCCCCcccccccceeeeeecCC
Q 038550 380 SKVRELMKSREAKKNPGCSWVQTRDEVQDFVVNDR 414 (423)
Q Consensus 380 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (423)
...+++|...-++.+|.+.+..++...+.|.=.+.
T Consensus 338 L~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W~CP 372 (389)
T COG2956 338 LDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYWHCP 372 (389)
T ss_pred HHHHHHHHHHHHhhcCCceecccCCcceeeeeeCC
Confidence 89999999999999999999999888777655543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-12 Score=115.58 Aligned_cols=392 Identities=10% Similarity=0.041 Sum_probs=298.3
Q ss_pred ccccCCcchhHHhhcccCC---cChhhHHHHHHHHHhCCChHHHHHHHhhc----hhCCCCCCchhHHHHHHHhhcCCCC
Q 038550 2 YAKSSRPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREM----PIHNEFPNSVTLTNVLPACARGHFL 74 (423)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m----~~~~~~p~~~~~~~l~~~~~~~~~~ 74 (423)
|++...|+.|.++++...+ .+...|-.-...=-.+|+.+...+++.+- ...|+..+...|-.=...|-..|..
T Consensus 416 larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv 495 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSV 495 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCCh
Confidence 4555567777777776654 46777777666667788888887776653 4557788888888888888888888
Q ss_pred ccHHHHHHHHHHcCCCC--chHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHH
Q 038550 75 RPGKEIHARIIRKGLNF--DLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148 (423)
Q Consensus 75 ~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 148 (423)
-.+..+....+..|++- ...||+.-...|.+.+.++-|..+| +..+.+...|......=-..|..+....++++
T Consensus 496 ~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqk 575 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQK 575 (913)
T ss_pred hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 88888888888777653 3457777788888888888888888 45566777888887777778888999999999
Q ss_pred HHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC--CCChhh
Q 038550 149 MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP--VKDSAS 226 (423)
Q Consensus 149 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~ 226 (423)
....- +-....+.......-..|++..|..++..+.+..+. +...+-.-+.....+.+++.|..+|.+.. .+....
T Consensus 576 av~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv 653 (913)
T KOG0495|consen 576 AVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERV 653 (913)
T ss_pred HHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchh
Confidence 88763 444455555666677789999999999998887654 67777778888889999999999998765 456667
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038550 227 WNTLILGYGMLGEVDTAINLFEAMREDGVGYD-PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305 (423)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (423)
|.--+...--.++.++|.+++++..+. -|+ ...|..+.+.+-+.++.+.|...|..-.+. ++.....|..|.+.=-
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEE 730 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHH
Confidence 766666666678899999999888875 344 457777888888889999998888766554 3445566777777777
Q ss_pred hcCChHHHHHHHhhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-------------------------
Q 038550 306 RAGLMEDAVKLIKNL--PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ------------------------- 358 (423)
Q Consensus 306 ~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------------------------- 358 (423)
+.|.+-+|..++++. ...-+...|...|+.-.+.|+.+.|..+..++++.-|.
T Consensus 731 k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DAL 810 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDAL 810 (913)
T ss_pred HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHH
Confidence 888999999999987 32337788999999999999999999888888776555
Q ss_pred -----CcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCCCCccc
Q 038550 359 -----HCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWV 400 (423)
Q Consensus 359 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 400 (423)
++......+..|....+++.|++.|.+....+ |+.+-.|.
T Consensus 811 kkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~wa 855 (913)
T KOG0495|consen 811 KKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--PDNGDAWA 855 (913)
T ss_pred HhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--CccchHHH
Confidence 34556667777888888899999998887754 45555554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.8e-13 Score=120.31 Aligned_cols=280 Identities=11% Similarity=-0.062 Sum_probs=198.5
Q ss_pred hcCCCCccHHHHHHHHHHcCCCCchH-HHHHHHHHHHhcCChHHHHHHhch---hcCCcc--hHHHHHHHHhcCCChhhH
Q 038550 69 ARGHFLRPGKEIHARIIRKGLNFDLF-LTNALTDMYAKCGCLNLAQNVFNI---SFRDEV--SYNILIVGYSQTSDCSES 142 (423)
Q Consensus 69 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~---~~~~~~--~~~~l~~~~~~~~~~~~a 142 (423)
...|+++.|.+.+....+. .|++. .+-....+....|+.+.|.+.+.. ..|+.. ..-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3578888888888776655 34433 333445667777888888888822 223332 333357777888888888
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHH---H----hcCCHHHHHHH
Q 038550 143 LSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFY---T----RSGRIDLANKI 215 (423)
Q Consensus 143 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~~~~~~A~~~ 215 (423)
...++.+.+.. |-+......+...+...|+++.+.+.+..+.+.+..+.......-..++ . .....+...+.
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88888888865 4456677788888888888888888888888876543332211111111 2 22334455566
Q ss_pred hccCCC---CChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038550 216 FDCLPV---KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS---YIAILTACSHGGLVEKGKKYFDEMQADS 289 (423)
Q Consensus 216 ~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 289 (423)
++..+. .++..+..+...+...|+.++|.+++++..+.. |+... ...........++.+.+.+.++...+..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 666653 478888999999999999999999999998863 34331 1222223345678888999998888762
Q ss_pred CCCCh--hhHHHHHHHHHhcCChHHHHHHHhh--C-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 290 VKPTE--MHYACMVDLLGRAGLMEDAVKLIKN--L-PVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 290 ~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~--~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
+-|. ....++...+.+.|++++|.+.|++ . ...|+...+..+...+.+.|+.++|.+++++...
T Consensus 330 -p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 -DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred -CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344 5666889999999999999999994 3 6789999999999999999999999999999865
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-12 Score=116.54 Aligned_cols=280 Identities=13% Similarity=-0.011 Sum_probs=200.2
Q ss_pred HHhcCChHHHHHHhchh---cC-CcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchh--hHHHHHHHHHhHhhHHh
Q 038550 103 YAKCGCLNLAQNVFNIS---FR-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV--SFMGAISACANLAAIKQ 176 (423)
Q Consensus 103 ~~~~g~~~~a~~~~~~~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~ 176 (423)
-...|+++.|.+.+... .+ ....+-....+..+.|+.+.|.+.+.+..+. .|+.. ........+...|+++.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHH
Confidence 34689999999999221 22 2334455567788899999999999998764 35443 33345777888999999
Q ss_pred hhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCC---ChhhHHH----HHHHHhccCCHHHHHHHHHH
Q 038550 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK---DSASWNT----LILGYGMLGEVDTAINLFEA 249 (423)
Q Consensus 177 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~----li~~~~~~g~~~~a~~~~~~ 249 (423)
|...++.+.+..+. +..+...+...+.+.|+++.|.+.+..+.+. +...+.. ........+..+.+.+.+..
T Consensus 172 Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999998743 4466778999999999999999999887732 3333321 11122333333334445555
Q ss_pred HHHcCC---CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhh-HHHHHHH--HHhcCChHHHHHHHhhC-CC
Q 038550 250 MREDGV---GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH-YACMVDL--LGRAGLMEDAVKLIKNL-PV 322 (423)
Q Consensus 250 m~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~--~~~~~~~~~a~~~~~~~-~~ 322 (423)
+.+... +.+...+..+...+...|+.++|.+++++..+.. |+... ...++.. ....++.+.+.+.+++. ..
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 544321 1377888889999999999999999999999863 33321 1012222 23457788888888776 44
Q ss_pred CC-CH--hHHHHHHHHHHhcCChhHHHHHHH--HHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 323 EP-DA--NIWGALLGACRIYGNVELGAWAAE--HLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 323 ~~-~~--~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
.| |+ ....++...+.+.|++++|.+.|+ ...+..|++.. +..++..+.+.|+.++|.+++++-..
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55 34 567788999999999999999999 46667776544 66999999999999999999998644
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.6e-12 Score=109.03 Aligned_cols=257 Identities=11% Similarity=0.089 Sum_probs=197.5
Q ss_pred HHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhcc--CcchHHHHHHHHHHHhcC
Q 038550 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL--HTHLFVANSILDFYTRSG 207 (423)
Q Consensus 130 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 207 (423)
..++....+.+++++-.......|++-+...-+....+.....++++|+.+|+++.+..+ -.|..+|+.++-.-..+.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 445555667777777777777777655554444455555677888999999998888743 124555555543222211
Q ss_pred CHH-HHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 038550 208 RID-LANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ 286 (423)
Q Consensus 208 ~~~-~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 286 (423)
++. -|..++ .+.+--+.|.-++..-|.-.++.++|...|++..+.+.. ....|+.+..-|...++...|.+-++.++
T Consensus 314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 111 122222 222334566667777888889999999999999986432 45678888888999999999999999999
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHH
Q 038550 287 ADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI 364 (423)
Q Consensus 287 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 364 (423)
+-. +.|-..|-.|.++|.-.+...-|+-.|++. ..+| |+..|.+|...|.+.++.++|++.|.++...+-.+...+.
T Consensus 392 di~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~ 470 (559)
T KOG1155|consen 392 DIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV 470 (559)
T ss_pred hcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence 874 668899999999999999999999999998 6777 7889999999999999999999999999998877888999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 365 LLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 365 ~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
.++..|.+.++.++|.+.|++..+.
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999999999999988763
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-13 Score=123.20 Aligned_cols=281 Identities=13% Similarity=0.031 Sum_probs=213.8
Q ss_pred ChHHHHHHhchh----cCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcC--CCCchhhHHHHHHHHHhHhhHHhhhHHH
Q 038550 108 CLNLAQNVFNIS----FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG--MKHDVVSFMGAISACANLAAIKQGKEIH 181 (423)
Q Consensus 108 ~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 181 (423)
+..+|...|... .........+..+|...+++++|.++|+...+.. ..-+...|.+.+-.+-+. -+..++
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 456777777222 2233445667889999999999999999988743 112556777777655322 222223
Q ss_pred HHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCC---ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC
Q 038550 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK---DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD 258 (423)
Q Consensus 182 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 258 (423)
.+-+-.--+..+.+|-++.++|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+....+ +
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-h 488 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-H 488 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-h
Confidence 22222223456789999999999999999999999988743 5678888888889999999999999988754211 2
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHH
Q 038550 259 PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGAC 336 (423)
Q Consensus 259 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~ 336 (423)
-.+|--+...|.++++++.|+-.|+++.+.+ +-+.+....+...+-+.|+.++|+++++++ ...| |+..--.-+..+
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 3355566777999999999999999999865 456677777888889999999999999998 4444 555544556677
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCC
Q 038550 337 RIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKN 394 (423)
Q Consensus 337 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 394 (423)
...+++++|+..++++++.-|++...+..++..|-+.|+.+.|+.-|.-+.+...+++
T Consensus 568 ~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 8889999999999999999999999999999999999999999998888877655443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.7e-12 Score=116.67 Aligned_cols=375 Identities=11% Similarity=0.027 Sum_probs=215.7
Q ss_pred cchhHHhhcccCCcChh-hHHHHHHHH--HhCCChHHHHHHHhhchhCC--CCCCchhHHHHHHHhhcCCCCccHHHHHH
Q 038550 8 PAEASYLFHNIAEKNIV-SWNAMVANF--AQNRLELKALQLVREMPIHN--EFPNSVTLTNVLPACARGHFLRPGKEIHA 82 (423)
Q Consensus 8 ~~~A~~~~~~~~~~~~~-~~~~ll~~~--~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 82 (423)
++.|...|..+.+.++. +.-.|..++ ...|++..|+.+|....... .+||+.. .+-.++.+.|+.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 46777777777652211 223344443 45678889999998865442 3444432 33456678888888888888
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhc---CChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCC
Q 038550 83 RIIRKGLNFDLFLTNALTDMYAKC---GCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMK 155 (423)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 155 (423)
..++.+. -++.++-.|...-... ..+..+..++ ...+.|++..+.|...|.-.|++..++.+...+......
T Consensus 224 ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 8887642 2333333333222222 2344455544 445667788888888888888888888888777664311
Q ss_pred --CchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHH
Q 038550 156 --HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTL 230 (423)
Q Consensus 156 --~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 230 (423)
.-...|-.+.+++-..|++++|..+|.+..+.........+--+...|.+.|+++.+...|+.+. +.+..+...+
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 12335667778888888888888888777765544333344456777888888888888887765 2345556666
Q ss_pred HHHHhccC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH----HcCCCCChhhHHHHHH
Q 038550 231 ILGYGMLG----EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ----ADSVKPTEMHYACMVD 302 (423)
Q Consensus 231 i~~~~~~g----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~ 302 (423)
...|+..+ ..+.|..++.+..+.- +.|...|..+...+... +...+..+|..+. ..+-++.....|.+..
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 66665553 4455666666555542 22555665555554443 3333355444433 2344455666666666
Q ss_pred HHHhcCChHHHHHHHhhC-CC-----CCCH------hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 038550 303 LLGRAGLMEDAVKLIKNL-PV-----EPDA------NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMY 370 (423)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~-~~-----~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 370 (423)
.+...|++++|...|+.. +. .+|. .+--.+...+-..++++.|.+.|..+.+..|.-...|..++...
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma 540 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMA 540 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHH
Confidence 667777777777766655 11 1122 11122233334445555555555555555555555555554333
Q ss_pred HhcCChhHHHHHHHHHH
Q 038550 371 AEAGKWDEASKVRELMK 387 (423)
Q Consensus 371 ~~~g~~~~A~~~~~~m~ 387 (423)
...+...+|...++...
T Consensus 541 ~~k~~~~ea~~~lk~~l 557 (1018)
T KOG2002|consen 541 RDKNNLYEASLLLKDAL 557 (1018)
T ss_pred HhccCcHHHHHHHHHHH
Confidence 34444455555554443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-15 Score=128.96 Aligned_cols=249 Identities=15% Similarity=0.147 Sum_probs=102.2
Q ss_pred HHHHHHhcCChHHHHHHh-c---h--hcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHh
Q 038550 99 LTDMYAKCGCLNLAQNVF-N---I--SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172 (423)
Q Consensus 99 l~~~~~~~g~~~~a~~~~-~---~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 172 (423)
+...+.+.|++++|.+++ . . .+.|...|..+.......++++.|.+.++++...+ +-+...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence 344555566666666666 1 1 12344445555556666777777777777777654 2244555555555 5777
Q ss_pred hHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC-----CCChhhHHHHHHHHhccCCHHHHHHHH
Q 038550 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP-----VKDSASWNTLILGYGMLGEVDTAINLF 247 (423)
Q Consensus 173 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~ 247 (423)
++++|.++++...+.. ++...+...+..+.+.++++++..+++.+. +.+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777776655443 334445667777778888888777776643 346677888888888999999999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-
Q 038550 248 EAMREDGVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP- 324 (423)
Q Consensus 248 ~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~- 324 (423)
++..+. .| |......++..+...|+.+++..+++...+.. +.+...+..+..+|...|+.++|+..|++. ...|
T Consensus 170 ~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 170 RKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 998886 34 56778888888999999999888888887764 556677788889999999999999999887 3345
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 325 DANIWGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
|+.+...+..++...|+.++|..+.+++.+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 777888888999999999999988887654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.3e-12 Score=117.03 Aligned_cols=355 Identities=13% Similarity=0.074 Sum_probs=247.1
Q ss_pred HHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHH
Q 038550 33 FAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLA 112 (423)
Q Consensus 33 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 112 (423)
....|++++|.+++.+.++.. +.....|.+|...|-+.|+.+++...+-.+-... +-|...|..+.....+.|.++.|
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 334488888888888888764 4466788888888888888888877766555443 45667788888888888888888
Q ss_pred HHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchh----hHHHHHHHHHhHhhHHhhhHHHHHH
Q 038550 113 QNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV----SFMGAISACANLAAIKQGKEIHGVT 184 (423)
Q Consensus 113 ~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~ 184 (423)
.-.| +..+++...+-.-...|-+.|+...|..-|.++.....+.|.. ....++..+...++-+.|.+.++..
T Consensus 227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8887 3445555555556777888888888888888888754222222 2223344555566667777777776
Q ss_pred HHh-ccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC--------------------------CChhhHH----HHHHH
Q 038550 185 IRK-HLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV--------------------------KDSASWN----TLILG 233 (423)
Q Consensus 185 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------------------------~~~~~~~----~li~~ 233 (423)
.+. +-..+...++.++..|.+...++.|......+.. ++...|. -+.-+
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 662 2334555667788888888888887766654321 1111111 12233
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 038550 234 YGMLGEVDTAINLFEAMREDGVGY--DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLME 311 (423)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 311 (423)
+...+..+....+.+...+..+.| +...|.-+..+|...|++..|..+|..+.....--+...|-.+..+|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 445555555556666666665444 456888999999999999999999999998743445778999999999999999
Q ss_pred HHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC---------CCcchHHHHHHHHHhcCChhHHH
Q 038550 312 DAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKP---------QHCGYYILLSNMYAEAGKWDEAS 380 (423)
Q Consensus 312 ~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~ 380 (423)
.|.+.|++. ...| +...--+|...+-+.|+.++|.+.++.+...++ ++..........+...|+.++-+
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999988 5556 445666677788899999999999988663332 22334455667788999998877
Q ss_pred HHHHHHHhc
Q 038550 381 KVRELMKSR 389 (423)
Q Consensus 381 ~~~~~m~~~ 389 (423)
.+...|...
T Consensus 547 ~t~~~Lv~~ 555 (895)
T KOG2076|consen 547 NTASTLVDD 555 (895)
T ss_pred HHHHHHHHH
Confidence 776666553
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.2e-13 Score=119.16 Aligned_cols=256 Identities=14% Similarity=0.090 Sum_probs=200.3
Q ss_pred ChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhcc--CcchHHHHHHHHHHHhcCCHHH-HHH
Q 038550 138 DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL--HTHLFVANSILDFYTRSGRIDL-ANK 214 (423)
Q Consensus 138 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~-A~~ 214 (423)
+..+|+..|.+..++ +.-+......+..+|...+++++++++|+.+.+..+ -.+..+|.+.+--+-+.-.+.- |..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 567899999985554 344556777888999999999999999999988643 2345666666644333222221 222
Q ss_pred HhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC
Q 038550 215 IFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT 293 (423)
Q Consensus 215 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 293 (423)
+. .+.+..+.+|-++..+|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+... +-+
T Consensus 413 Li-~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rh 488 (638)
T KOG1126|consen 413 LI-DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRH 488 (638)
T ss_pred HH-hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chh
Confidence 22 233457899999999999999999999999999985 34 56788888888888999999999999987532 223
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038550 294 EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371 (423)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 371 (423)
-..|-.|...|.+.++++.|+-.|+++ .+.| +.+....+...+.+.|+.++|+.+++++.-++|.++-.-...+..+.
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~ 568 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF 568 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence 344555678899999999999999998 7788 66677778888999999999999999999999999999888899999
Q ss_pred hcCChhHHHHHHHHHHhccccCCCCCccc
Q 038550 372 EAGKWDEASKVRELMKSREAKKNPGCSWV 400 (423)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 400 (423)
..+++++|.+.++++++ +.|+.+..+.
T Consensus 569 ~~~~~~eal~~LEeLk~--~vP~es~v~~ 595 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKE--LVPQESSVFA 595 (638)
T ss_pred hhcchHHHHHHHHHHHH--hCcchHHHHH
Confidence 99999999999999987 3455544333
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-11 Score=103.05 Aligned_cols=282 Identities=12% Similarity=-0.004 Sum_probs=145.2
Q ss_pred CCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 038550 36 NRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV 115 (423)
Q Consensus 36 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 115 (423)
.|+|.+|.++..+-.+.+-. ....|..-..+.-+.|+.+.+-.++.+..+....++...+-+........|+++.
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~a---- 171 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPA---- 171 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchh----
Confidence 35555555555554443321 1223333334444555555555555555444223333444444444444454444
Q ss_pred hchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcch--
Q 038550 116 FNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHL-- 193 (423)
Q Consensus 116 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 193 (423)
|..-+.++.+.+ +-..........+|.+.|++.....++..+.+.+.-.+.
T Consensus 172 --------------------------A~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~ 224 (400)
T COG3071 172 --------------------------ARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA 224 (400)
T ss_pred --------------------------HHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH
Confidence 444444444433 223334444444444444444444444444444432222
Q ss_pred -----HHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038550 194 -----FVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI 265 (423)
Q Consensus 194 -----~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 265 (423)
.++..+++-....+..+.-...++..+ +.++..-.+++.-+...|+.++|.++.++..+++..|+. ..
T Consensus 225 ~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~ 300 (400)
T COG3071 225 ARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CR 300 (400)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HH
Confidence 233334443333344444444555554 235555566666666777777777777776666554441 11
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCHhHHHHHHHHHHhcCChhH
Q 038550 266 LTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDANIWGALLGACRIYGNVEL 344 (423)
Q Consensus 266 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ 344 (423)
.-.+.+-++...-.+..++-.+. .+-++..+.+|...|.+.+.+.+|...|+.. ...|+..+|+.+..++.+.|+..+
T Consensus 301 ~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 301 LIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred HHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHH
Confidence 22345555665555555555544 1233355666666666777777777766655 556666677777777777777776
Q ss_pred HHHHHHHHHh
Q 038550 345 GAWAAEHLFM 354 (423)
Q Consensus 345 a~~~~~~~~~ 354 (423)
|.++.++...
T Consensus 380 A~~~r~e~L~ 389 (400)
T COG3071 380 AEQVRREALL 389 (400)
T ss_pred HHHHHHHHHH
Confidence 6666666653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-11 Score=105.73 Aligned_cols=360 Identities=14% Similarity=0.107 Sum_probs=201.9
Q ss_pred HHHHHHhCCChHHHHHHHhhchhCCCCCCchhHH-HHHHHhhcCCCCccHHHHHHHHHHcCCCCch----HHHHHHHHHH
Q 038550 29 MVANFAQNRLELKALQLVREMPIHNEFPNSVTLT-NVLPACARGHFLRPGKEIHARIIRKGLNFDL----FLTNALTDMY 103 (423)
Q Consensus 29 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~ 103 (423)
|..-|..+..+.+|+..++-+.+...-|+.-.+. .+...+.+.+.+.+|+++|+..+..-...+. ...+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 4455666777888888888887776667765443 3445677788888888888877765322222 2344455557
Q ss_pred HhcCChHHHHHHh---chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchh--------hHHHHHHH-----
Q 038550 104 AKCGCLNLAQNVF---NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV--------SFMGAISA----- 167 (423)
Q Consensus 104 ~~~g~~~~a~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--------~~~~ll~~----- 167 (423)
.+.|.+++|+..| -...|+..+-..|+-++...|+-++..+.|.+|......||.. .-..++.-
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 7888888888888 2234555554455556666788888888888886643222211 11112211
Q ss_pred --------------------------------------------------------------HHhHhhHHhhhHHHHHHH
Q 038550 168 --------------------------------------------------------------CANLAAIKQGKEIHGVTI 185 (423)
Q Consensus 168 --------------------------------------------------------------~~~~~~~~~a~~~~~~~~ 185 (423)
+.+.|+++.|.++++...
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~ 446 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE 446 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH
Confidence 122233333333333332
Q ss_pred HhccCcchHHHHHHHH-HH-----------------------------------HhcCCHHHHHHHhccCCCCChhhHHH
Q 038550 186 RKHLHTHLFVANSILD-FY-----------------------------------TRSGRIDLANKIFDCLPVKDSASWNT 229 (423)
Q Consensus 186 ~~~~~~~~~~~~~l~~-~~-----------------------------------~~~~~~~~A~~~~~~~~~~~~~~~~~ 229 (423)
+.........-+.|-. -| ...|++++|.+.|++....|...-.+
T Consensus 447 ~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ea 526 (840)
T KOG2003|consen 447 KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEA 526 (840)
T ss_pred hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHH
Confidence 2211110000000000 00 01123333333333333222221111
Q ss_pred H---HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038550 230 L---ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR 306 (423)
Q Consensus 230 l---i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 306 (423)
| ...+-..|+.++|++.|-++... +.-+......+...|....+..+|++++.+.... ++.|+.....|...|-+
T Consensus 527 lfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydq 604 (840)
T KOG2003|consen 527 LFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQ 604 (840)
T ss_pred HHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhc
Confidence 1 11223334444444444443321 1123344444555555555666666666555443 45567777778888888
Q ss_pred cCChHHHHHHHhh-CCCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 038550 307 AGLMEDAVKLIKN-LPVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRE 384 (423)
Q Consensus 307 ~~~~~~a~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 384 (423)
.|+-..|++.+-. ...-| +..+..-|...|....-+++++.+|+++.-+.|....-...++.++.+.|++..|.++|+
T Consensus 605 egdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk 684 (840)
T KOG2003|consen 605 EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYK 684 (840)
T ss_pred ccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 8888888776433 34334 666666677777777778889999999888888755555556677889999999999999
Q ss_pred HHHhcc
Q 038550 385 LMKSRE 390 (423)
Q Consensus 385 ~m~~~~ 390 (423)
+...+-
T Consensus 685 ~~hrkf 690 (840)
T KOG2003|consen 685 DIHRKF 690 (840)
T ss_pred HHHHhC
Confidence 887653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.9e-12 Score=116.92 Aligned_cols=251 Identities=15% Similarity=0.065 Sum_probs=165.3
Q ss_pred HHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHhchhcCCc
Q 038550 44 QLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDE 123 (423)
Q Consensus 44 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 123 (423)
.++-.+...|+.|+..||..+|..||..|+++.|- +|..|.-...+.+...++.++.+...+++.+.+. .|..
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------ep~a 83 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------EPLA 83 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------CCch
Confidence 34555666777787788888887788888877777 7777776666777777777777777777776664 5566
Q ss_pred chHHHHHHHHhcCCChhhHHHHHHH-HH-------hcCCCCchh--------------hHHHHHHHHHhHhhHHhhhHHH
Q 038550 124 VSYNILIVGYSQTSDCSESLSLFSE-MR-------LLGMKHDVV--------------SFMGAISACANLAAIKQGKEIH 181 (423)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~a~~~~~~-m~-------~~~~~~~~~--------------~~~~ll~~~~~~~~~~~a~~~~ 181 (423)
.+|..|..+|...||... ++..++ |. ..|+-.... .-...+......|.++.+.+++
T Consensus 84 Dtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 677778888877777544 222222 21 122111111 1112233334455566665555
Q ss_pred HHHHHhc-cCcchHHHHHHHHHHH-hcCCHHHHHHHhccCC-CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC
Q 038550 182 GVTIRKH-LHTHLFVANSILDFYT-RSGRIDLANKIFDCLP-VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD 258 (423)
Q Consensus 182 ~~~~~~~-~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 258 (423)
..+-... ..|... .++-.. ....+++-..+..... .+++.+|...+.+-...|+.+.|..++.+|++.|++.+
T Consensus 163 ~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred hhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 4332211 111111 111111 1223344444444444 47999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038550 259 PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309 (423)
Q Consensus 259 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 309 (423)
..-|..++-+ .++...++.+++-|.+.|+.|+..|+...+..+...|.
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8888888765 78888999999999999999999999888777766554
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-10 Score=100.18 Aligned_cols=357 Identities=11% Similarity=0.036 Sum_probs=220.7
Q ss_pred cCCcchhHHhhcccCC--cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHH
Q 038550 5 SSRPAEASYLFHNIAE--KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHA 82 (423)
Q Consensus 5 ~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 82 (423)
.|++..|.++|++-.+ |+..+|++.|..=.+-+.++.|..+++...- +.|+..+|-.-...=.+.|....+..+|+
T Consensus 154 LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred hcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 4667777777766443 7777777777777777777777777777765 34777777777777677777777777777
Q ss_pred HHHHc-CC-CCchHHHHHHHHHHHhcCChHHHHHHh----chhcCC--cchHHHHHHHHhcCCChhhHHHH--------H
Q 038550 83 RIIRK-GL-NFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRD--EVSYNILIVGYSQTSDCSESLSL--------F 146 (423)
Q Consensus 83 ~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~--------~ 146 (423)
..++. |- ..+...+.+...--.++..++.|.-+| +..+.+ ...|..+...=-+.|+.....+. |
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 76643 10 112223344444344556666666666 333333 33444444443444554433332 2
Q ss_pred HHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchH------HHHHH---HHHHHhcCCHHHHHHHhc
Q 038550 147 SEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF------VANSI---LDFYTRSGRIDLANKIFD 217 (423)
Q Consensus 147 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l---~~~~~~~~~~~~A~~~~~ 217 (423)
+.+...+ +-|-.++.-.+......|+.+...++++.++..-++.... .|--+ +-.-....+.+.+.++|+
T Consensus 312 E~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 312 EKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3333333 4455666666666677788888888888777653332211 11111 111123566777777776
Q ss_pred cCC---CCChhh----HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 038550 218 CLP---VKDSAS----WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290 (423)
Q Consensus 218 ~~~---~~~~~~----~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 290 (423)
... +....| |-.....-.++.+...|.+++-..+ |.-|...+|...|..-.+.++++.+..++++.++.+
T Consensus 391 ~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~- 467 (677)
T KOG1915|consen 391 ACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS- 467 (677)
T ss_pred HHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 543 222233 3333344456677888888777665 446777788888888888888888888888888765
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCC----CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 038550 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP----DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILL 366 (423)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 366 (423)
|-+..+|......=...|+.+.|..+|.-.-..| ....|.+.|..-...|.++.|..+|+++++..+.. ..|..+
T Consensus 468 Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~-kvWisF 546 (677)
T KOG1915|consen 468 PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV-KVWISF 546 (677)
T ss_pred hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc-hHHHhH
Confidence 4566777777776677888888888887663233 34567777777778888888888888888766543 255555
Q ss_pred HH
Q 038550 367 SN 368 (423)
Q Consensus 367 ~~ 368 (423)
+.
T Consensus 547 A~ 548 (677)
T KOG1915|consen 547 AK 548 (677)
T ss_pred HH
Confidence 43
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.2e-11 Score=101.63 Aligned_cols=284 Identities=14% Similarity=0.075 Sum_probs=221.3
Q ss_pred hcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHH
Q 038550 105 KCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180 (423)
Q Consensus 105 ~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 180 (423)
..|++.+|+++. +..+.....|..-+.+-...|+.+.+-..+.+.-+..-.++...+.+........|+.+.|..-
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 368999999999 3334455567777788888999999999999998753355556667777788899999999999
Q ss_pred HHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCC-----------ChhhHHHHHHHHhccCCHHHHHHHHHH
Q 038550 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-----------DSASWNTLILGYGMLGEVDTAINLFEA 249 (423)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~ 249 (423)
++.+...++.+ +........+|.+.|++.....++..+.+. ...+|+.+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~pr~-~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPRH-PEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 99998887655 455678889999999999999999988753 234688888877777777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCC-CCHh
Q 038550 250 MREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVE-PDAN 327 (423)
Q Consensus 250 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~-~~~~ 327 (423)
...+ .+-++..-..++.-+.+.|+.++|.++..+..+.+..|+.. . .-.+.+-++.+.-++..++. ... -++.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~---~-~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC---R-LIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH---H-HHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 6654 34466777788888999999999999999999987666621 1 22345666666655555544 222 2457
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCC
Q 038550 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNP 395 (423)
Q Consensus 328 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 395 (423)
.+.+|...|.+.+.+.+|...|+.+.+..|+ ...|..++.+|.+.|+..+|.+..++....-.+|+.
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 8889999999999999999999999988876 678999999999999999999999988765555543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-11 Score=104.55 Aligned_cols=291 Identities=15% Similarity=0.131 Sum_probs=213.4
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHh-chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhH--HHHH
Q 038550 89 LNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF--MGAI 165 (423)
Q Consensus 89 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~ll 165 (423)
...|...+-.....+.+.|....|+..| .....-+..|.+.+....-..+.+.+..+. .|.+.|..-. ..+.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~-----~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILV-----VGLPSDMHWMKKFFLK 234 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHH-----hcCcccchHHHHHHHH
Confidence 3455555555555667778888888888 444444445555444433333333322222 1223222211 2344
Q ss_pred HHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCC------ChhhHHHHHHHHhccCC
Q 038550 166 SACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK------DSASWNTLILGYGMLGE 239 (423)
Q Consensus 166 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~ 239 (423)
.++......+++.+-.+.....|.+.....-+....+.-...+++.|+.+|+++.+. |..+|...+- .++.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhh
Confidence 566677788888888899999998887777777778888899999999999999854 4556666553 33332
Q ss_pred HHHHHHHHHH-HH-HcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 038550 240 VDTAINLFEA-MR-EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLI 317 (423)
Q Consensus 240 ~~~a~~~~~~-m~-~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 317 (423)
.. +..+.+ .. -... .+.|...+.+.|.-.++.++|..+|++..+.+ +-....|..+.+-|....+...|.+-+
T Consensus 313 sk--Ls~LA~~v~~idKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 313 SK--LSYLAQNVSNIDKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HH--HHHHHHHHHHhccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 22 122221 11 1223 34577788888888999999999999999875 445677888889999999999999999
Q ss_pred hhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 318 KNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 318 ~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
+++ .+.| |-..|-.|.++|...+...-|+-.|+++.+..|.|+..|.+|+.+|.+.++.++|+..|++....|-
T Consensus 388 RrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 388 RRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 998 6777 8889999999999999999999999999999999999999999999999999999999999887654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.3e-11 Score=98.65 Aligned_cols=218 Identities=14% Similarity=0.109 Sum_probs=141.0
Q ss_pred HhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCc---hHHHHHHHHHHHhcCChH
Q 038550 34 AQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFD---LFLTNALTDMYAKCGCLN 110 (423)
Q Consensus 34 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~ 110 (423)
.-+.+.++|.++|-+|.+.. +-+..+-.++.+.|.+.|..+.|+++...+.++.--+. ......|..-|...|-+|
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred HhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 34568899999999999853 23445666788889999999999999999886532111 234556777899999999
Q ss_pred HHHHHhc-hh---cCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchh----hHHHHHHHHHhHhhHHhhhHHHH
Q 038550 111 LAQNVFN-IS---FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV----SFMGAISACANLAAIKQGKEIHG 182 (423)
Q Consensus 111 ~a~~~~~-~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~ 182 (423)
.|+.+|. .. +--..+.-.|+..|....+|++|+++-+++.+.+-.+... .|.-+...+....+.+.|...+.
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 9999993 22 2244567789999999999999999999998876544322 33444444445566777777777
Q ss_pred HHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCCh----hhHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 038550 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS----ASWNTLILGYGMLGEVDTAINLFEAMRED 253 (423)
Q Consensus 183 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 253 (423)
+..+.+......+ -.+.+.+...|+++.|.+.++.+.+.|+ .+...|..+|...|+.++....+..+.+.
T Consensus 205 kAlqa~~~cvRAs-i~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 205 KALQADKKCVRAS-IILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHhhCccceehh-hhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 6666543322211 1234445555555555555555544332 23334444555555555555555554443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-11 Score=102.39 Aligned_cols=194 Identities=15% Similarity=0.090 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 038550 194 FVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACS 270 (423)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 270 (423)
..+..+...+...|++++|...+++.. +.+...+..+...+...|++++|...+++..+... .+...+..+...+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHH
Confidence 344455566666666666666666543 22455667777788888888888888888877642 35567777788888
Q ss_pred ccCcHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHH
Q 038550 271 HGGLVEKGKKYFDEMQADS-VKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAW 347 (423)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~ 347 (423)
..|++++|...+++..... .+.....+..+...+...|++++|...+++. ...| +...+..+...+...|++++|..
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 8899999999998888752 2223456667778888999999999998877 3344 45678888888999999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 348 AAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 348 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
.++++.+..|.++..+..++..+...|+.++|..+.+.+..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999888888888888888899999999999998887754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-10 Score=99.39 Aligned_cols=337 Identities=12% Similarity=-0.001 Sum_probs=221.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhhchhCCCCCC-chhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCc-hHHHHHHHHH
Q 038550 25 SWNAMVANFAQNRLELKALQLVREMPIHNEFPN-SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFD-LFLTNALTDM 102 (423)
Q Consensus 25 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 102 (423)
.+.....-|.++|++++|++.+.+.+.. .|| +..|.....+|...|+|+++.+.-...++. .|+ ...+..-.++
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASA 192 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHH
Confidence 3445556788999999999999999885 577 788889999999999999999988888766 343 4466666778
Q ss_pred HHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHH---------HHhcC--CCCchhhHHHHHHHHHhH
Q 038550 103 YAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSE---------MRLLG--MKHDVVSFMGAISACANL 171 (423)
Q Consensus 103 ~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---------m~~~~--~~~~~~~~~~ll~~~~~~ 171 (423)
+-..|++++|+.=. |-..+...+....-.--+.+++++ |.+.+ +-|+.....+....+...
T Consensus 193 ~E~lg~~~eal~D~--------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 193 HEQLGKFDEALFDV--------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HHhhccHHHHHHhh--------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 88889888886432 222222222222222222222221 22122 234433333333322110
Q ss_pred ------hhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHh-cCCHHHHHHHhccC-------CCC---C------hhhHH
Q 038550 172 ------AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR-SGRIDLANKIFDCL-------PVK---D------SASWN 228 (423)
Q Consensus 172 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~-------~~~---~------~~~~~ 228 (423)
...+++-..+....+ ..+.. ...+.+|...+.+- ... | ..+..
T Consensus 265 ~~~~~~~~~~ksDa~l~~~l~--------------~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~ 330 (606)
T KOG0547|consen 265 PKPLFDNKSDKSDAALAEALE--------------ALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALL 330 (606)
T ss_pred ccccccCCCccchhhHHHHHH--------------HHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHH
Confidence 000011111110000 00000 00122222222110 111 1 11222
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038550 229 TLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308 (423)
Q Consensus 229 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 308 (423)
....-+.-.|+.-.|.+-|+..+.....++. .|..+...|....+.++.+..|++..+.+ +-++.+|..-.+.+.-.+
T Consensus 331 ~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 331 LRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred HhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHH
Confidence 2222344568899999999999987544332 37778888999999999999999999875 456778887888888889
Q ss_pred ChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 309 LMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386 (423)
Q Consensus 309 ~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 386 (423)
++++|..-|++. .+.| +...|-.+.-+..+.+++++++..|++..+..|.-+..|+..+.++..+++++.|.+.|+..
T Consensus 409 q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 409 QYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 999999999988 6777 56678888888889999999999999999999999999999999999999999999999998
Q ss_pred Hhc
Q 038550 387 KSR 389 (423)
Q Consensus 387 ~~~ 389 (423)
.+.
T Consensus 489 i~L 491 (606)
T KOG0547|consen 489 IEL 491 (606)
T ss_pred Hhh
Confidence 764
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-10 Score=101.31 Aligned_cols=270 Identities=11% Similarity=0.014 Sum_probs=208.5
Q ss_pred cCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHH
Q 038550 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSI 199 (423)
Q Consensus 120 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 199 (423)
..++........-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+-..+++.-+ ....+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP-~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP-SKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCCcchhhH
Confidence 3455556666677778889999999999988764 66666777777788888888777777777777644 445666778
Q ss_pred HHHHHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 038550 200 LDFYTRSGRIDLANKIFDCLPV---KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVE 276 (423)
Q Consensus 200 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 276 (423)
...|.-.|+.++|++.|.+... .-...|-.+..+|+-.|..++|+..+...-+.- +-...-+--+.--|.+.++.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHH
Confidence 8888888999999999987653 345789999999999999999999888876641 111112222334477889999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC-----C---CC-CHhHHHHHHHHHHhcCChhHHHH
Q 038550 277 KGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP-----V---EP-DANIWGALLGACRIYGNVELGAW 347 (423)
Q Consensus 277 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~---~~-~~~~~~~l~~~~~~~~~~~~a~~ 347 (423)
.|.++|.+.... .|-|+...+-+.-.....+.+.+|..+|+..- + .+ -..+++.|..+|.+.+.+++|+.
T Consensus 398 LAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 999999998875 35577778888777778889999999887651 1 11 34568888899999999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCC
Q 038550 348 AAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNP 395 (423)
Q Consensus 348 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 395 (423)
.+++++.+.|.++.++..++-.|...|+++.|++.|.+... +.|+.
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n 522 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDN 522 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCcc
Confidence 99999999999999999999999999999999999988654 45555
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.8e-11 Score=105.86 Aligned_cols=232 Identities=17% Similarity=0.154 Sum_probs=176.9
Q ss_pred chhhHHHHHHHHHhHhhHHhhhHHHHHHHHh-----c-cCcc-hHHHHHHHHHHHhcCCHHHHHHHhccCC--------C
Q 038550 157 DVVSFMGAISACANLAAIKQGKEIHGVTIRK-----H-LHTH-LFVANSILDFYTRSGRIDLANKIFDCLP--------V 221 (423)
Q Consensus 157 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~ 221 (423)
-..+...+...|...|+++.|+.+++..++. | ..|. ....+.+...|...+++++|..+|+++. +
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3457777899999999999999999988775 1 1222 2333457788999999999999998765 1
Q ss_pred C---ChhhHHHHHHHHhccCCHHHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHc---
Q 038550 222 K---DSASWNTLILGYGMLGEVDTAINLFEAMRED-----GV-GYDP-VSYIAILTACSHGGLVEKGKKYFDEMQAD--- 288 (423)
Q Consensus 222 ~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~-~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 288 (423)
. -..+++.|...|.+.|++++|...++...+- |. .|.. ..++.+...|+..+++++|..+++...+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1 2356788888999999999998888876431 21 2222 24667777799999999999999887664
Q ss_pred CCCCC----hhhHHHHHHHHHhcCChHHHHHHHhhC---------CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 289 SVKPT----EMHYACMVDLLGRAGLMEDAVKLIKNL---------PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 289 ~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~---------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
-+.++ ..+++.|...|...|++++|.++++++ +..+ ....++.|...|.+.+++++|.++|++...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 12222 467899999999999999999999876 1223 245678888999999999999999988765
Q ss_pred c----CCCC---cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 355 L----KPQH---CGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 355 ~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
. +|++ ..+|..|+..|.+.|++++|+++.+....
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3 3444 45688999999999999999999888763
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-10 Score=108.26 Aligned_cols=260 Identities=12% Similarity=0.042 Sum_probs=169.2
Q ss_pred CcchHHHHHHHHhc-----CCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHh---------HhhHHhhhHHHHHHHHh
Q 038550 122 DEVSYNILIVGYSQ-----TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN---------LAAIKQGKEIHGVTIRK 187 (423)
Q Consensus 122 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~ 187 (423)
+...|...+.+... .+++++|.+.|++..+.. +-+...|..+..++.. .+++++|...++++.+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 44445555554321 234678888888888743 2234455555554432 24478888888888876
Q ss_pred ccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038550 188 HLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA 264 (423)
Q Consensus 188 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 264 (423)
++. +...+..+..++...|++++|...|++.. +.+...+..+...+...|++++|...+++..+.... +...+..
T Consensus 334 dP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~ 411 (553)
T PRK12370 334 DHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGIT 411 (553)
T ss_pred CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHH
Confidence 543 45566677778888899999999988765 335567788888888899999999999998876432 2223334
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCHh-HHHHHHHHHHhcCCh
Q 038550 265 ILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDAN-IWGALLGACRIYGNV 342 (423)
Q Consensus 265 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~ 342 (423)
++..+...|++++|...++++.....+-+...+..+..++...|+.++|...++++ ...|+.. ..+.+...|...|
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 489 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS-- 489 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--
Confidence 44456667888999998888876532223445666777888889999999988887 3445433 3444555566666
Q ss_pred hHHHHHHHHHHhcC---CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 343 ELGAWAAEHLFMLK---PQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 343 ~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
+.|...++.+.+.. +.++.. +...|.-.|+-+.+..+ +++.+.+
T Consensus 490 ~~a~~~l~~ll~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 ERALPTIREFLESEQRIDNNPGL---LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHHHHHHhhHhhcCchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 47777677765533 443333 33445556666666655 7776654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.7e-10 Score=107.49 Aligned_cols=255 Identities=10% Similarity=0.006 Sum_probs=162.2
Q ss_pred CCchhHHHHHHHhhc-----CCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHH---------hcCChHHHHHHh----c
Q 038550 56 PNSVTLTNVLPACAR-----GHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYA---------KCGCLNLAQNVF----N 117 (423)
Q Consensus 56 p~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~a~~~~----~ 117 (423)
.+...|...+.+... .+++++|...|++.++.. +.+...|..+..++. ..+++++|...+ +
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 355555555544211 234567888888887664 233455555554443 223467777777 4
Q ss_pred hhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHH
Q 038550 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVAN 197 (423)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 197 (423)
..+.+..++..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...++.+.+..+.+... +.
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~-~~ 410 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAA-GI 410 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhh-HH
Confidence 455677778888888888888888888888888764 4445667777788888888888888888888876543222 22
Q ss_pred HHHHHHHhcCCHHHHHHHhccCC---CC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcc
Q 038550 198 SILDFYTRSGRIDLANKIFDCLP---VK-DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP-VSYIAILTACSHG 272 (423)
Q Consensus 198 ~l~~~~~~~~~~~~A~~~~~~~~---~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~ 272 (423)
.++..+...|++++|...+++.. .| ++..+..+..++...|+.++|...+.++... .|+. ...+.+...|+..
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhcc
Confidence 34445666788888888887653 23 4455677777888889999998888887654 3333 3444555556666
Q ss_pred CcHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCChHHHHHHHhhC
Q 038550 273 GLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 273 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (423)
| +.|...++.+.+. .-.+....+ +-..|.-.|+.+.+..+ +++
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~ 532 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKF 532 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHh
Confidence 6 4777777776654 222322223 33344556666666655 666
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-12 Score=79.91 Aligned_cols=50 Identities=20% Similarity=0.372 Sum_probs=40.5
Q ss_pred cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhc
Q 038550 21 KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70 (423)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 70 (423)
||+.+||.+|++|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888887764
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.5e-09 Score=94.98 Aligned_cols=377 Identities=12% Similarity=0.064 Sum_probs=221.9
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCC-chHHHHHHH
Q 038550 22 NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNF-DLFLTNALT 100 (423)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~ 100 (423)
|...|..|.-+....|+++.+.+.|++....- .-....|+.+...+...|.-..|..+++.-......| ++..+-..-
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 55566666666667777777777777665432 2244566666666666666666666666554332122 222222222
Q ss_pred HHHH-hcCChHHHHHHh----c-----hhcCCcchHHHHHHHHhcC-----------CChhhHHHHHHHHHhcCCCCchh
Q 038550 101 DMYA-KCGCLNLAQNVF----N-----ISFRDEVSYNILIVGYSQT-----------SDCSESLSLFSEMRLLGMKHDVV 159 (423)
Q Consensus 101 ~~~~-~~g~~~~a~~~~----~-----~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~ 159 (423)
..|. +.+.+++++..- + ...-....|..+.-+|... ....++++.+++..+.+ +.|..
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~ 479 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPL 479 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCch
Confidence 2222 224444444333 1 0011223344443333221 11345566666666544 33333
Q ss_pred hHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCC-----------------
Q 038550 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK----------------- 222 (423)
Q Consensus 160 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------------- 222 (423)
....+.--|+..++++.|.....+..+.+...+...|..+.-.+...+++.+|+.+.+.....
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~ 559 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELT 559 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhh
Confidence 444444455666677777777777777666666666666666666677777776666533210
Q ss_pred --C----hhhHHHHHHHHh-----------------------ccCCHHHHHHHHHHH--------HHcC---------CC
Q 038550 223 --D----SASWNTLILGYG-----------------------MLGEVDTAINLFEAM--------REDG---------VG 256 (423)
Q Consensus 223 --~----~~~~~~li~~~~-----------------------~~g~~~~a~~~~~~m--------~~~~---------~~ 256 (423)
| ..|...++...- ..++..++......+ ...| +.
T Consensus 560 ~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~ 639 (799)
T KOG4162|consen 560 FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL 639 (799)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc
Confidence 0 011111111110 001111111111111 0011 11
Q ss_pred CCH--------HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC-H
Q 038550 257 YDP--------VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD-A 326 (423)
Q Consensus 257 p~~--------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~-~ 326 (423)
|.. ..|......+.+.+..++|...+.+.... .+.....|......+...|..++|.+.|... .+.|+ +
T Consensus 640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv 718 (799)
T KOG4162|consen 640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV 718 (799)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc
Confidence 111 12334455567778888888888887765 3456667777778888899999999988876 67784 5
Q ss_pred hHHHHHHHHHHhcCChhHHHH--HHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCCCCccccc
Q 038550 327 NIWGALLGACRIYGNVELGAW--AAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQT 402 (423)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 402 (423)
.+..++...+.+.|+...|.. ++..+.+.+|.++.+|..++..+.+.|+.++|.+.|....+... .+|..+|..+
T Consensus 719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~-S~PV~pFs~i 795 (799)
T KOG4162|consen 719 PSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE-SNPVLPFSNI 795 (799)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc-CCCccccccc
Confidence 688889999999999888888 99999999999999999999999999999999999999877653 3444455443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-12 Score=78.35 Aligned_cols=50 Identities=30% Similarity=0.590 Sum_probs=34.4
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 038550 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH 271 (423)
Q Consensus 222 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 271 (423)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 46666777777777777777777777777777777777777777766653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.4e-10 Score=95.01 Aligned_cols=192 Identities=15% Similarity=0.098 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 038550 95 LTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN 170 (423)
Q Consensus 95 ~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 170 (423)
.+..+...+...|++++|.+.+ +..+.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 3444444444444444444444 1112233344444445555555555555555554432 2233334444444444
Q ss_pred HhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 038550 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM 250 (423)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 250 (423)
.|++++|...++...+....+ .....+..+...+...|++++|...+++.
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 161 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYP------------------------------QPARSLENAGLCALKAGDFDKAEKYLTRA 161 (234)
T ss_pred cccHHHHHHHHHHHHhccccc------------------------------cchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555555444444321111 11223344444555555566666555555
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhh
Q 038550 251 REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKN 319 (423)
Q Consensus 251 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 319 (423)
.+... .+...+..+...+...|++++|...+++.... .+.+...+..+...+...|+.++|..+.+.
T Consensus 162 ~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 162 LQIDP-QRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHhCc-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 54321 13344555555555666666666666655554 233344444555555555666666555444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.1e-11 Score=97.68 Aligned_cols=226 Identities=12% Similarity=0.022 Sum_probs=190.7
Q ss_pred HHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC--C-ChhhHHHHHHHHhcc
Q 038550 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV--K-DSASWNTLILGYGML 237 (423)
Q Consensus 161 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~ 237 (423)
-+-+..+|.+.|.+.+|++.++..++.... +.||..|..+|.+..++..|+.+|.+-.. | ++.....+.+.+-..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~--~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPH--PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCc--hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 356788999999999999999988876544 45667788999999999999999987763 3 444445567778888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 038550 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLI 317 (423)
Q Consensus 238 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 317 (423)
++.++|.++++...+.. +.+......+...|.-.++++-|..+|+++...|+ -+...|+.+.-+|.-.++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999988864 23666777777888999999999999999999985 57788999999999999999999888
Q ss_pred hhC---CCCC--CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 318 KNL---PVEP--DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 318 ~~~---~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
++. ...| -..+|-.|.......||+..|.+.|+-+...+|++...++.|+-.-.+.|++++|..+++...+..
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 876 1223 356788888888999999999999999999999999999999999999999999999999887643
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.9e-11 Score=96.29 Aligned_cols=230 Identities=8% Similarity=0.014 Sum_probs=192.8
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhc
Q 038550 127 NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206 (423)
Q Consensus 127 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 206 (423)
+.+.++|.+.|.+.+|.+.++.-++. .|-+.||..+-.+|.+..+++.|..++.+-++.- +.++....-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56889999999999999999998875 5667799999999999999999999998877652 23344444566788889
Q ss_pred CCHHHHHHHhccCCC---CChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 038550 207 GRIDLANKIFDCLPV---KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFD 283 (423)
Q Consensus 207 ~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 283 (423)
++.++|.++|+...+ .++....++...|.-.++++-|+..++++.+.|+. ++..|..+.-+|.-.++++-+..-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999998764 36667777778888899999999999999999987 88899999999999999999999999
Q ss_pred HHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 038550 284 EMQADSVKPT--EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359 (423)
Q Consensus 284 ~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 359 (423)
+....--.|+ ..+|-.+.......||+..|.+.|+-. ...| +...++.|.-.-.+.|++++|..++..+....|.-
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 9887633343 456777777778899999999999977 3234 56789999888899999999999999999998874
Q ss_pred c
Q 038550 360 C 360 (423)
Q Consensus 360 ~ 360 (423)
.
T Consensus 463 ~ 463 (478)
T KOG1129|consen 463 A 463 (478)
T ss_pred c
Confidence 3
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-08 Score=87.03 Aligned_cols=266 Identities=14% Similarity=0.039 Sum_probs=117.8
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHh---chhcC-CcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHH
Q 038550 91 FDLFLTNALTDMYAKCGCLNLAQNVF---NISFR-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAIS 166 (423)
Q Consensus 91 ~~~~~~~~l~~~~~~~g~~~~a~~~~---~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 166 (423)
.|......+.+++...|+.++|+..| .+..| ++.........+.+.|+++....+...+.... .-....|..-+.
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQ 308 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhh
Confidence 34444455555555555555555555 11122 22222223333344444444444444443321 111122222222
Q ss_pred HHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHH
Q 038550 167 ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTA 243 (423)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a 243 (423)
.+...++++.|..+-++.++.+.. +...+-.-..++...++.+.|.--|+... +-+...|..|+.+|...|++.+|
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 333344455555544444443221 11222222234445555555555554332 22445555555555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHH-HHH-hccCcHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHhhC
Q 038550 244 INLFEAMREDGVGYDPVSYIAIL-TAC-SHGGLVEKGKKYFDEMQADSVKPT-EMHYACMVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 244 ~~~~~~m~~~~~~p~~~~~~~ll-~~~-~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (423)
...-+...+. ++-+..+.+.+. ..| .....-++|.++++..... .|+ ....+.+...+...|..++++.++++.
T Consensus 388 ~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 388 NALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 5544443332 122333433331 111 1222234555555554443 222 233344445555555555565555554
Q ss_pred -CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc
Q 038550 321 -PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG 361 (423)
Q Consensus 321 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 361 (423)
.+.||....+.|...+...+.+++|++.|..+.+.+|.+..
T Consensus 465 L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 465 LIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 44555555555555555555566666666666665555533
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.1e-08 Score=88.94 Aligned_cols=101 Identities=14% Similarity=0.079 Sum_probs=80.8
Q ss_pred CCChhhH--HHHHHHHHhcCChHHHHHHHhhC-CCCCCHh-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 038550 291 KPTEMHY--ACMVDLLGRAGLMEDAVKLIKNL-PVEPDAN-IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILL 366 (423)
Q Consensus 291 ~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 366 (423)
+|+...| -.+++.|-+.|+++.|+..++.. +..|+.. .|..=.+.+...|++++|...++++.+++-.|...-.--
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence 4554444 45678888999999999999987 6677644 555556888999999999999999999997776555567
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccc
Q 038550 367 SNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 367 ~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
+....++++.++|.++.......|.
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhccc
Confidence 7778899999999999998887764
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-08 Score=93.84 Aligned_cols=279 Identities=11% Similarity=-0.019 Sum_probs=158.6
Q ss_pred cccCCcchhHHhhcccCC--cC-hhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhh------cCCC
Q 038550 3 AKSSRPAEASYLFHNIAE--KN-IVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA------RGHF 73 (423)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~------~~~~ 73 (423)
...|++++|+..++...+ .| ..........+.+.|+.++|..++..+++.+ |+...|...+..+. ...+
T Consensus 15 ~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 15 EEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred HHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccccccc
Confidence 467899999999977655 44 4455666788889999999999999998876 66666655555443 1224
Q ss_pred CccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh--chhcCCc-chHHHHHHHHhcCCChhhHHHHHHHHH
Q 038550 74 LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF--NISFRDE-VSYNILIVGYSQTSDCSESLSLFSEMR 150 (423)
Q Consensus 74 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~--~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~ 150 (423)
.+...++++++...- |.......+.-.+.....+......| ....+.+ .+|+.+-..|......+-..+++....
T Consensus 93 ~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~ 170 (517)
T PF12569_consen 93 VEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYV 170 (517)
T ss_pred HHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 566677777775442 22222221211122222333333333 2222232 344555455554444444444444443
Q ss_pred hc----C----------CCCch--hhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHH
Q 038550 151 LL----G----------MKHDV--VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANK 214 (423)
Q Consensus 151 ~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 214 (423)
.. + -+|+. .++..+...|...|++++|..+++..++..+. .+..|..-...+-..|++++|.+
T Consensus 171 ~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~ 249 (517)
T PF12569_consen 171 NSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAE 249 (517)
T ss_pred HhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHH
Confidence 22 1 12222 24445556666777777777777777665422 25566666677777777777777
Q ss_pred HhccCCCC---ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH--------HHHHHHHHhccCcHHHHHHHHH
Q 038550 215 IFDCLPVK---DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS--------YIAILTACSHGGLVEKGKKYFD 283 (423)
Q Consensus 215 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--------~~~ll~~~~~~~~~~~a~~~~~ 283 (423)
.++....- |-..-+-.+..+.+.|++++|.+++....+.+..|-... ......+|.+.|++..|++.|.
T Consensus 250 ~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~ 329 (517)
T PF12569_consen 250 AMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFH 329 (517)
T ss_pred HHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 77655533 334445556666777777777777777766554332211 1334455667777776666555
Q ss_pred HHH
Q 038550 284 EMQ 286 (423)
Q Consensus 284 ~~~ 286 (423)
.+.
T Consensus 330 ~v~ 332 (517)
T PF12569_consen 330 AVL 332 (517)
T ss_pred HHH
Confidence 444
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.8e-10 Score=103.58 Aligned_cols=363 Identities=12% Similarity=0.010 Sum_probs=216.5
Q ss_pred CcChhhHHHHHHHHHhCCChHHHHHHHhhchhCCC------------------------CCCchhHHHHHHHhhcCCCCc
Q 038550 20 EKNIVSWNAMVANFAQNRLELKALQLVREMPIHNE------------------------FPNSVTLTNVLPACARGHFLR 75 (423)
Q Consensus 20 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~------------------------~p~~~~~~~l~~~~~~~~~~~ 75 (423)
.||..+|..+|.-|+..|+.+.|- +|..|.-... .|...||+.+..+|+..||+.
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hGDli 100 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHGDLI 100 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhccchH
Confidence 489999999999999999999888 7777653322 366789999999999999876
Q ss_pred cHHHHHHHHH-------HcCC-----------------CCchHHHHHHHHHHHhcCChHHHHHHhc--------------
Q 038550 76 PGKEIHARII-------RKGL-----------------NFDLFLTNALTDMYAKCGCLNLAQNVFN-------------- 117 (423)
Q Consensus 76 ~a~~~~~~~~-------~~~~-----------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~-------------- 117 (423)
.-..+-+.|. ..|+ -||..+ .+......|-++.+.+++.
T Consensus 101 ~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqllkll~~~Pvsa~~~p~~vf 177 (1088)
T KOG4318|consen 101 LFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVF 177 (1088)
T ss_pred HHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHHHHHhhCCcccccchHHHH
Confidence 5332222222 1121 122221 1111222233333332220
Q ss_pred ----------------h-----hcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHh
Q 038550 118 ----------------I-----SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176 (423)
Q Consensus 118 ----------------~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 176 (423)
+ ..+++.+|..++.+-...|+.+.|..++.+|++.|++.+.+-|..++-+ .++...
T Consensus 178 Lrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~ 254 (1088)
T KOG4318|consen 178 LRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQV 254 (1088)
T ss_pred HHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchH
Confidence 0 0247778889999999999999999999999999999888888777766 778888
Q ss_pred hhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHH------------------------Hhc---------cCCC--
Q 038550 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANK------------------------IFD---------CLPV-- 221 (423)
Q Consensus 177 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~------------------------~~~---------~~~~-- 221 (423)
++.++.-|...|+.|+..|+.-.+..+.++|....+.. .++ ..++
T Consensus 255 ~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~f 334 (1088)
T KOG4318|consen 255 FEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLF 334 (1088)
T ss_pred HHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHH
Confidence 88889999999999999888766665555433211111 000 0000
Q ss_pred -----CChhhHHHHHHHHhccCCHHHHHHHHHHHHHcC------------------------------------------
Q 038550 222 -----KDSASWNTLILGYGMLGEVDTAINLFEAMREDG------------------------------------------ 254 (423)
Q Consensus 222 -----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------------------------------------------ 254 (423)
.....|...++.. ..|.-+...++...|..--
T Consensus 335 Llg~d~~~aiws~c~~l~-hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~ 413 (1088)
T KOG4318|consen 335 LLGTDILEAIWSMCEKLR-HQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLN 413 (1088)
T ss_pred HhccccchHHHHHHHHHH-HcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhc
Confidence 0111121111111 1222222222222111000
Q ss_pred -------------CCCCH----------------------------HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC
Q 038550 255 -------------VGYDP----------------------------VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT 293 (423)
Q Consensus 255 -------------~~p~~----------------------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 293 (423)
..||. ..-+.++..|++.-+..+++..-+.....-++
T Consensus 414 se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~-- 491 (1088)
T KOG4318|consen 414 SEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA-- 491 (1088)
T ss_pred hhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 01111 01122222333333333333222222222111
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhCC-----CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCcchHHH
Q 038550 294 EMHYACMVDLLGRAGLMEDAVKLIKNLP-----VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK---PQHCGYYIL 365 (423)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~ 365 (423)
..|..||+-++.....+.|..+.++.. +..|...+..+.+.+.+.+....+..+++++.+.- |.....+..
T Consensus 492 -g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~ 570 (1088)
T KOG4318|consen 492 -GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFP 570 (1088)
T ss_pred -hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHH
Confidence 457778888888888888888888873 23355567778888888899999999999887743 222334555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhccccC
Q 038550 366 LSNMYAEAGKWDEASKVRELMKSREAKK 393 (423)
Q Consensus 366 l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 393 (423)
+.......|+.+...++.+-+...|+..
T Consensus 571 ~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 571 LLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 6667778899888888888888888755
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.4e-08 Score=82.82 Aligned_cols=280 Identities=10% Similarity=-0.042 Sum_probs=203.2
Q ss_pred hcCChHHHHHHh------chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchh-hHHHHHHHHHhHhhHHhh
Q 038550 105 KCGCLNLAQNVF------NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV-SFMGAISACANLAAIKQG 177 (423)
Q Consensus 105 ~~g~~~~a~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a 177 (423)
..++...|...+ ...+.|+.....+..++...|+.++|+..|++.+.. .|+.. ........+.+.|+.+..
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhH
Confidence 345555555554 334557888899999999999999999999998763 34332 222233345677888888
Q ss_pred hHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCC---ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 038550 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK---DSASWNTLILGYGMLGEVDTAINLFEAMREDG 254 (423)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 254 (423)
..+...+....- .+...|-.-........+++.|+.+-++..+. ++..|-.-...+...|++++|.-.|+......
T Consensus 286 ~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 286 SALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 888777766432 22222333344556678888998888876643 44455544567888999999999999988752
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHH-HHHH-hcCChHHHHHHHhhC-CCCCC-HhHHH
Q 038550 255 VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV-DLLG-RAGLMEDAVKLIKNL-PVEPD-ANIWG 330 (423)
Q Consensus 255 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~-~~~~~-~~~~~ 330 (423)
+-+...|.-|+.+|...|++.+|...-+...+. ++.+..+...+. ..+. ...--++|..++++. .+.|+ ....+
T Consensus 365 -p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~ 442 (564)
T KOG1174|consen 365 -PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVN 442 (564)
T ss_pred -hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHH
Confidence 236789999999999999999999888777665 345555554442 2222 233457899998876 77886 44677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 331 ALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 331 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
.+...+...|..+.++.++++.....|+ ......|+..+...+.+.+|.+.|......+
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 7788899999999999999999998886 5788899999999999999999998876643
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-08 Score=92.92 Aligned_cols=285 Identities=10% Similarity=0.005 Sum_probs=183.3
Q ss_pred HHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC--
Q 038550 30 VANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCG-- 107 (423)
Q Consensus 30 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 107 (423)
...+...|++++|++.++.-... +......+......+.+.|+.++|..+|..+++.+ +.+..-|..+..+..-..
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 45678899999999999875543 44344566777888999999999999999999986 445555666666653222
Q ss_pred ---ChHHHHHHhc---hhcCCcchHHHHHHHHhcCCChh-hHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHH
Q 038550 108 ---CLNLAQNVFN---ISFRDEVSYNILIVGYSQTSDCS-ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEI 180 (423)
Q Consensus 108 ---~~~~a~~~~~---~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 180 (423)
+.+...++++ ..-|...+...+.-.+.....+. .+...+..+...|+|+ +|..+-..|......+-..++
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 3455556662 12222222222222222222333 3455667777888653 555555556555555555555
Q ss_pred HHHHHHh----c----------cCcch--HHHHHHHHHHHhcCCHHHHHHHhccCCC--C-ChhhHHHHHHHHhccCCHH
Q 038550 181 HGVTIRK----H----------LHTHL--FVANSILDFYTRSGRIDLANKIFDCLPV--K-DSASWNTLILGYGMLGEVD 241 (423)
Q Consensus 181 ~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~ 241 (423)
+...... + -+|+. .++..+...|...|++++|+.++++... | .+..|..-...+-..|++.
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHH
Confidence 5554432 1 12332 3445567778888888888888887653 2 3566777778888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhh--------HHHHHHHHHhcCChHHH
Q 038550 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH--------YACMVDLLGRAGLMEDA 313 (423)
Q Consensus 242 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~a 313 (423)
+|.+.++........ |...-+.....+.+.|+.++|.+++....+.+..|.... ......+|.+.|++..|
T Consensus 246 ~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 246 EAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 888888888876543 556666667778888888888888888877654333221 12345677788888887
Q ss_pred HHHHhhC
Q 038550 314 VKLIKNL 320 (423)
Q Consensus 314 ~~~~~~~ 320 (423)
+..|..+
T Consensus 325 Lk~~~~v 331 (517)
T PF12569_consen 325 LKRFHAV 331 (517)
T ss_pred HHHHHHH
Confidence 7665443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-09 Score=94.37 Aligned_cols=228 Identities=10% Similarity=-0.013 Sum_probs=138.9
Q ss_pred hcCCChhhHHHHHHHHHhcC-CCCc--hhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHH
Q 038550 134 SQTSDCSESLSLFSEMRLLG-MKHD--VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRID 210 (423)
Q Consensus 134 ~~~~~~~~a~~~~~~m~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 210 (423)
...+..+.++.-+.+++... ..|+ ...|..+...+...|+.++|...|+...+..+ .+...|+.+...+...|+++
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHH
Confidence 34466777888888877542 1222 34566677777788888888888888877654 34667777888888888888
Q ss_pred HHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038550 211 LANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287 (423)
Q Consensus 211 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 287 (423)
+|...|++.. +.+..+|..+..++...|++++|.+.++...+. .|+..........+...++.++|...+.+...
T Consensus 116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 8888887664 234567777777777888888888888887765 33322222222223455678888888866553
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHH--HHHHhhC-C----CCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-
Q 038550 288 DSVKPTEMHYACMVDLLGRAGLMEDA--VKLIKNL-P----VEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ- 358 (423)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~~~~~~~~a--~~~~~~~-~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~- 358 (423)
.. .|+...+ .+. ....|+...+ ++.+.+. . +.| ....|..+...+...|++++|+..|+++.+.+|.
T Consensus 194 ~~-~~~~~~~-~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 194 KL-DKEQWGW-NIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred hC-CccccHH-HHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 32 3332222 222 2234444332 2222211 1 111 2346777777788888888888888888887753
Q ss_pred CcchHHHHHH
Q 038550 359 HCGYYILLSN 368 (423)
Q Consensus 359 ~~~~~~~l~~ 368 (423)
.+.....+++
T Consensus 270 ~~e~~~~~~e 279 (296)
T PRK11189 270 FVEHRYALLE 279 (296)
T ss_pred HHHHHHHHHH
Confidence 3333333443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.8e-10 Score=87.73 Aligned_cols=173 Identities=14% Similarity=0.090 Sum_probs=124.9
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (423)
+...|.-+|...|+...|..-+++.++.... +..++..+...|.+.|..+.|.+.|++..+.. +-+..+.|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 3455666777888888888888887776322 45677777777888888888888888877753 445667777777778
Q ss_pred hcCChHHHHHHHhhCCCCC----CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHH
Q 038550 306 RAGLMEDAVKLIKNLPVEP----DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASK 381 (423)
Q Consensus 306 ~~~~~~~a~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 381 (423)
..|++++|...|++.-..| -..+|..+.-+..+.|+.+.|...|++.++.+|..+.....++....+.|++-.|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 8888888888887772233 345677777777778888888888888888888888888888888888888888888
Q ss_pred HHHHHHhccccCCCCCcccc
Q 038550 382 VRELMKSREAKKNPGCSWVQ 401 (423)
Q Consensus 382 ~~~~m~~~~~~~~~~~~~~~ 401 (423)
.+++....+. ++...-|..
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~ 213 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLG 213 (250)
T ss_pred HHHHHHhccc-ccHHHHHHH
Confidence 8877776665 444444443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.9e-09 Score=92.01 Aligned_cols=278 Identities=16% Similarity=0.068 Sum_probs=182.5
Q ss_pred CCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHH----HHhchhcCCcchHHHH
Q 038550 54 EFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQ----NVFNISFRDEVSYNIL 129 (423)
Q Consensus 54 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~----~~~~~~~~~~~~~~~l 129 (423)
..-+.........-|...+++.+..++.+...+.. ++....+..-|.++...|+..+-. ++.+..|....+|-++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhH
Confidence 33455555555666666777777777777777665 555555555566666666644332 2224455666777777
Q ss_pred HHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHh--ccCcchHHHHHHHHHHHhcC
Q 038550 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK--HLHTHLFVANSILDFYTRSG 207 (423)
Q Consensus 130 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 207 (423)
.--|...|..++|.+.|.+..... +.=...|.....++.-.|.-++|...+..+.+. |.. -+..| +.--|.+.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~ 394 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTN 394 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhc
Confidence 777777777777777777665432 112345666677777777777777776665552 211 11222 344467777
Q ss_pred CHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHc--CCC----CCHHHHHHHHHHHhccCcHHHH
Q 038550 208 RIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMRED--GVG----YDPVSYIAILTACSHGGLVEKG 278 (423)
Q Consensus 208 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~----p~~~~~~~ll~~~~~~~~~~~a 278 (423)
+++.|.++|.... +.|+...+-+.-.....+.+.+|..+|+..+.. .+. --..+++.|..+|.+.+.+++|
T Consensus 395 n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 7777777776554 446667777766666677788888888776521 011 1334678888888888888888
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCHhHHHHHHHHHH
Q 038550 279 KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDANIWGALLGACR 337 (423)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~ 337 (423)
+..++..+... +.+..++.++.-.|...|+++.|.+.|.+. .++|+..+...++..+.
T Consensus 475 I~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 475 IDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 88888888763 567888888888888888888888888776 77887766666665443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.7e-09 Score=94.93 Aligned_cols=237 Identities=17% Similarity=0.150 Sum_probs=155.0
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHhc----hh-------cCCcc-hHHHHHHHHhcCCChhhHHHHHHHHHhc-----C-C
Q 038550 93 LFLTNALTDMYAKCGCLNLAQNVFN----IS-------FRDEV-SYNILIVGYSQTSDCSESLSLFSEMRLL-----G-M 154 (423)
Q Consensus 93 ~~~~~~l~~~~~~~g~~~~a~~~~~----~~-------~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~-~ 154 (423)
..+...|...|...|+++.|+.++. .. .+.+. ..+.+...|...+++++|..+|+++... | -
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 4566668888888888888888882 21 11222 2345777888999999999999988753 2 1
Q ss_pred CC-chhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCCh-hhHHHHHH
Q 038550 155 KH-DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS-ASWNTLIL 232 (423)
Q Consensus 155 ~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~li~ 232 (423)
.| -..+++.|..+|.+.|++++|...++.+.+.--.. +. ...+.+ ..++.++.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~-----------~~--------------~~~~~v~~~l~~~~~ 333 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL-----------LG--------------ASHPEVAAQLSELAA 333 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh-----------hc--------------cChHHHHHHHHHHHH
Confidence 12 23366667777788888888877776654421000 00 001111 22444555
Q ss_pred HHhccCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHc----CCC--C-ChhhHH
Q 038550 233 GYGMLGEVDTAINLFEAMRED---GVGYD----PVSYIAILTACSHGGLVEKGKKYFDEMQAD----SVK--P-TEMHYA 298 (423)
Q Consensus 233 ~~~~~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~ 298 (423)
.++..+++++|..+++...+. -+.++ ..+++.+...|...|++++|++++++++.. +.. + ....++
T Consensus 334 ~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~ 413 (508)
T KOG1840|consen 334 ILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLN 413 (508)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHH
Confidence 666677777777777654331 11222 357888888888889999888888887654 111 1 244567
Q ss_pred HHHHHHHhcCChHHHHHHHhhC--------CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 299 CMVDLLGRAGLMEDAVKLIKNL--------PVEPD-ANIWGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 299 ~l~~~~~~~~~~~~a~~~~~~~--------~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
.|...|.+.+++.+|.++|.+. ...|+ ..+|..|...|...|+++.|+++.+.+..
T Consensus 414 ~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 414 QLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 7778888888888888887765 23344 35788899999999999999999888864
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-07 Score=86.90 Aligned_cols=358 Identities=14% Similarity=0.111 Sum_probs=245.1
Q ss_pred ccccCCcchhHHhhcccCC---cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCC-chhHHHHHHHhh-cCCCCcc
Q 038550 2 YAKSSRPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPN-SVTLTNVLPACA-RGHFLRP 76 (423)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~-~~~~~~~ 76 (423)
+.+.|+++.+.+.|++... .....|+.+...+...|.-..|+.+++......-.|+ ...+-..-..|. +.+..++
T Consensus 333 l~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~ee 412 (799)
T KOG4162|consen 333 LSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEE 412 (799)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhh
Confidence 4578999999999999665 5677899999999999999999999988766543343 334433334444 4677888
Q ss_pred HHHHHHHHHHc--CC--CCchHHHHHHHHHHHhcC-----------ChHHHHHHh----chhcCCcchHHHHHHHHhcCC
Q 038550 77 GKEIHARIIRK--GL--NFDLFLTNALTDMYAKCG-----------CLNLAQNVF----NISFRDEVSYNILIVGYSQTS 137 (423)
Q Consensus 77 a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~g-----------~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~ 137 (423)
+..+..+++.. +. ...+..|..+.-+|...- ...++.+.+ +..+.|..+...+.--|+..+
T Consensus 413 gldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R 492 (799)
T KOG4162|consen 413 GLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQR 492 (799)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 88877777762 11 123444555554544321 123344444 223445555555666677889
Q ss_pred ChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccC-------------------cchHHHHH
Q 038550 138 DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLH-------------------THLFVANS 198 (423)
Q Consensus 138 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------------------~~~~~~~~ 198 (423)
+.+.|.+..++..+.+-.-+...|..+.-.+...+++..|+.+.+.....-.. ....|...
T Consensus 493 ~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~ 572 (799)
T KOG4162|consen 493 QLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIH 572 (799)
T ss_pred hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHH
Confidence 99999999999999865678888988888889999999999988776553211 01112222
Q ss_pred HHHHHHh------cCCHHHHHHHhccC----------------------------------C------CCC------hhh
Q 038550 199 ILDFYTR------SGRIDLANKIFDCL----------------------------------P------VKD------SAS 226 (423)
Q Consensus 199 l~~~~~~------~~~~~~A~~~~~~~----------------------------------~------~~~------~~~ 226 (423)
++..+-. .++-....+....+ + .|+ ...
T Consensus 573 ~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~l 652 (799)
T KOG4162|consen 573 KLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKL 652 (799)
T ss_pred HHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHH
Confidence 2222210 01100111111110 0 011 123
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038550 227 WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR 306 (423)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 306 (423)
|......+.+.+..++|...+.+..... +.....|......+...|...+|.+.|....... |-+.....++..++.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 5556667788889999988888887652 3466677777778888999999999999988753 3356778899999999
Q ss_pred cCChHHHHH--HHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc
Q 038550 307 AGLMEDAVK--LIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG 361 (423)
Q Consensus 307 ~~~~~~a~~--~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 361 (423)
.|+..-|.. ++..+ .+.| +...|-.+...+.+.|+.+.|.+.|..+.++.+.+|.
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999888877 77777 6666 7889999999999999999999999999998876653
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-07 Score=78.73 Aligned_cols=380 Identities=10% Similarity=0.030 Sum_probs=208.2
Q ss_pred ccCCcchhHHhhcccCC---cChhhHH-HHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHH
Q 038550 4 KSSRPAEASYLFHNIAE---KNIVSWN-AMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKE 79 (423)
Q Consensus 4 ~~g~~~~A~~~~~~~~~---~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 79 (423)
-..++..|+.+++.-.. ......+ -+..++.+.|++++|+..+..+.... .|+...+..+..+..-.|.+.+|..
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHH
Confidence 34567777777765443 1111222 24566788899999999998887653 4666677777666666677777776
Q ss_pred HHHHHHHcCCCCchHHHHHH------------------------------HHHHHhcCChHHHHHHh-chh--cCCcchH
Q 038550 80 IHARIIRKGLNFDLFLTNAL------------------------------TDMYAKCGCLNLAQNVF-NIS--FRDEVSY 126 (423)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l------------------------------~~~~~~~g~~~~a~~~~-~~~--~~~~~~~ 126 (423)
+-.... .++-.-..| .+...-.-.+.+|++++ +.. .|+-...
T Consensus 113 ~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~al 187 (557)
T KOG3785|consen 113 IAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIAL 187 (557)
T ss_pred HHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhh
Confidence 654331 111111222 22222223455666666 222 1222223
Q ss_pred HH-HHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhH--hhHHhhh------------HHHHHHHHhcc--
Q 038550 127 NI-LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL--AAIKQGK------------EIHGVTIRKHL-- 189 (423)
Q Consensus 127 ~~-l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--~~~~~a~------------~~~~~~~~~~~-- 189 (423)
|. +.-+|.+..-++-+.++++-.++. ++-+....+..+....+. |+..+.+ ...+.+.+.++
T Consensus 188 NVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVv 266 (557)
T KOG3785|consen 188 NVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVV 266 (557)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEE
Confidence 32 344566666666666776666553 222333333333332222 1111110 01122222110
Q ss_pred ----------Cc-----chHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccC-------CHHHHHHHH
Q 038550 190 ----------HT-----HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG-------EVDTAINLF 247 (423)
Q Consensus 190 ----------~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~a~~~~ 247 (423)
-| -+..--.|+-.|.+.++.++|..+.+.+.+..+.-|-.-.-.++..| ....|.+.|
T Consensus 267 FrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqff 346 (557)
T KOG3785|consen 267 FRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFF 346 (557)
T ss_pred EeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Confidence 01 11122234556778888999988888887665544433222233333 344566666
Q ss_pred HHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC-CC-C
Q 038550 248 EAMREDGVGYDP-VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP-VE-P 324 (423)
Q Consensus 248 ~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~-~ 324 (423)
+-.-+.+..-|. .--.++..++.-..++++...++..+...=...|...+ .+.++++..|.+.+|+++|-++. -+ .
T Consensus 347 qlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik 425 (557)
T KOG3785|consen 347 QLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK 425 (557)
T ss_pred HHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh
Confidence 555444432222 22344455555566788888888877766333344444 46788888999999999988772 11 3
Q ss_pred CHhHHHHH-HHHHHhcCChhHHHHHHHHHHhcC-CCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhccccCC
Q 038550 325 DANIWGAL-LGACRIYGNVELGAWAAEHLFMLK-PQHC-GYYILLSNMYAEAGKWDEASKVRELMKSREAKKN 394 (423)
Q Consensus 325 ~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 394 (423)
|..+|.++ .++|.+.++.+.|-.+ +.+.+ |.+. ......+.-|.+.+.+=-|.+.|+.+...+..|+
T Consensus 426 n~~~Y~s~LArCyi~nkkP~lAW~~---~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 426 NKILYKSMLARCYIRNKKPQLAWDM---MLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred hhHHHHHHHHHHHHhcCCchHHHHH---HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence 55566554 4677888888876554 44444 3222 2234456678888888888888888776665554
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-08 Score=88.07 Aligned_cols=222 Identities=13% Similarity=0.025 Sum_probs=130.7
Q ss_pred CCCccHHHHHHHHHHcC-CCC--chHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHH
Q 038550 72 HFLRPGKEIHARIIRKG-LNF--DLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLS 144 (423)
Q Consensus 72 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 144 (423)
+..+.++.-+.+++... ..| ....|..+...|...|+.++|...| +..+.+...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34555566666666432 112 1345666667777778887777777 3445566777778888888888888888
Q ss_pred HHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC-CC
Q 038550 145 LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-KD 223 (423)
Q Consensus 145 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~ 223 (423)
.|++..+.. +-+..++..+..++...|++++|.+.++...+..+... ........+...++.++|...|.+... .+
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~--~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP--YRALWLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 888777643 22455666777777777888888888877777544322 111122223455677888877754332 12
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHc---CC--CC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhH
Q 038550 224 SASWNTLILGYGMLGEVDTAINLFEAMRED---GV--GY-DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHY 297 (423)
Q Consensus 224 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 297 (423)
...|.. .......|+...+ +.+..+.+. .+ .| ...+|..+...+.+.|++++|...|++..+.+ +|+..-+
T Consensus 197 ~~~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~ 273 (296)
T PRK11189 197 KEQWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEH 273 (296)
T ss_pred ccccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHH
Confidence 222221 1222234454443 234443321 11 11 34578888888888888888888888888764 3454444
Q ss_pred HH
Q 038550 298 AC 299 (423)
Q Consensus 298 ~~ 299 (423)
..
T Consensus 274 ~~ 275 (296)
T PRK11189 274 RY 275 (296)
T ss_pred HH
Confidence 33
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.9e-08 Score=80.11 Aligned_cols=374 Identities=10% Similarity=0.044 Sum_probs=234.9
Q ss_pred cccCCcchhHHhhcccCC---cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHH-HHHhhcCCCCccHH
Q 038550 3 AKSSRPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNV-LPACARGHFLRPGK 78 (423)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~ 78 (423)
.+..++++|++++....+ ++....+.|..+|....++..|.+.++++-.. .|...-|..- ...+.+.+.+..|+
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHH
Confidence 456678888888877654 36677888889999999999999999998764 3555544432 34566788888999
Q ss_pred HHHHHHHHcCCCCchH--HHHHHHHHHHhcCChHHHHHHhchhc--CCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCC
Q 038550 79 EIHARIIRKGLNFDLF--LTNALTDMYAKCGCLNLAQNVFNISF--RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGM 154 (423)
Q Consensus 79 ~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 154 (423)
++...|... |+.. +...-.......+++..+..+.+..+ .+..+.+...-...+.|+++.|.+-|+...+-+.
T Consensus 99 rV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG 175 (459)
T KOG4340|consen 99 RVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG 175 (459)
T ss_pred HHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence 988877632 2221 11111223445678888888884433 4556666666677789999999999999888654
Q ss_pred CCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcc----------------------------hHHHHHHHHHHHhc
Q 038550 155 KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH----------------------------LFVANSILDFYTRS 206 (423)
Q Consensus 155 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------------------~~~~~~l~~~~~~~ 206 (423)
-.....|+..+ +..+.++.+.|.+...+++++|+... ...+|.-...+.+.
T Consensus 176 yqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~ 254 (459)
T KOG4340|consen 176 YQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQL 254 (459)
T ss_pred CCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhc
Confidence 44556776544 55678899999999999988875321 11223333446778
Q ss_pred CCHHHHHHHhccCCCC-----ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 038550 207 GRIDLANKIFDCLPVK-----DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281 (423)
Q Consensus 207 ~~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 281 (423)
|+++.|.+.+-.|+++ |++|...+.-. -..+++.+..+-+.-+.+... .-..||..++-.||+..-++.|-.+
T Consensus 255 ~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADv 332 (459)
T KOG4340|consen 255 RNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADV 332 (459)
T ss_pred ccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHH
Confidence 9999999999999854 66776554432 234566666666666666543 3457888888999999988888887
Q ss_pred HHHHHHcCC-CCChhhHHHHHHHHHh-cCChHHHHHHHhhCCCCCCHhHHHHHHHH--HHhcCC---hhHHHHHHHHHHh
Q 038550 282 FDEMQADSV-KPTEMHYACMVDLLGR-AGLMEDAVKLIKNLPVEPDANIWGALLGA--CRIYGN---VELGAWAAEHLFM 354 (423)
Q Consensus 282 ~~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~l~~~--~~~~~~---~~~a~~~~~~~~~ 354 (423)
+.+-..... -.+...|+ |+.++.- .-.+++|++-+..+........-...+.. -...++ ...+++-+++..+
T Consensus 333 LAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE 411 (459)
T KOG4340|consen 333 LAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLE 411 (459)
T ss_pred HhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 755322211 12333343 3444443 34566666655544101000111111111 111111 2233334444444
Q ss_pred cCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 355 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
+- ......-+..|.+..++..++++|+.-.+
T Consensus 412 ~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 412 KY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 32 12345556778899999999999987654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.5e-08 Score=78.28 Aligned_cols=195 Identities=13% Similarity=0.060 Sum_probs=122.0
Q ss_pred HHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHH
Q 038550 166 SACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDT 242 (423)
Q Consensus 166 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 242 (423)
-.|...|+...|..-+++.++..+ ....++..+...|.+.|..+.|.+.|+... +.+..+.|....-+|..|++++
T Consensus 43 l~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHH
Confidence 344444444444444444444332 123334445555555555555555555433 3345566666677777778888
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-
Q 038550 243 AINLFEAMREDGVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL- 320 (423)
Q Consensus 243 a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~- 320 (423)
|...|++......-| -..+|..+.-+..+.|+.+.|...|++..+.. +-...+...+.+...+.|++-.|..++++.
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 888887777643222 23567777777777888888888888777753 333455666777777788888888777766
Q ss_pred -CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcch
Q 038550 321 -PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGY 362 (423)
Q Consensus 321 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 362 (423)
+..++..+....|+.-...||.+.+-+.-.++.+..|.++..
T Consensus 201 ~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 201 QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 334666677667777777788887777777777777766543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2e-07 Score=83.90 Aligned_cols=350 Identities=13% Similarity=0.085 Sum_probs=170.7
Q ss_pred HhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHH
Q 038550 34 AQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQ 113 (423)
Q Consensus 34 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 113 (423)
...|+-++|.+..+.-....+ -+.+.|+.+.-.+....++++|++.|...+..+ +.|...+.-+.-.-+..++++...
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHH
Confidence 334555555555554444322 244455555444445555555555555555443 334444444443444444444333
Q ss_pred HHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcC-CCCchhhHHHHHHHH------HhHhhHHhhhHHHH
Q 038550 114 NVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVVSFMGAISAC------ANLAAIKQGKEIHG 182 (423)
Q Consensus 114 ~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~------~~~~~~~~a~~~~~ 182 (423)
..- +..+.....|..++.++.-.|+...|..++++..+.. -.|+...|......+ ...|..+.|.+.+.
T Consensus 130 ~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 130 ETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 222 3333444555555555555566666666665555443 134444443332222 22233333433333
Q ss_pred HHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC--CChhhHHH-HHHHHhccCCHHHHH-HHHHHHHHcCCCCC
Q 038550 183 VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV--KDSASWNT-LILGYGMLGEVDTAI-NLFEAMREDGVGYD 258 (423)
Q Consensus 183 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g~~~~a~-~~~~~m~~~~~~p~ 258 (423)
.-... +......-..-...+.+.+++++|..++..+.. ||...|.. +..++.+-.+.-++. .+|....+.- |.
T Consensus 210 ~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r 286 (700)
T KOG1156|consen 210 DNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PR 286 (700)
T ss_pred hhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cc
Confidence 22211 101111112334445556666666666655542 22233322 223332222222222 3343333321 11
Q ss_pred HHHHHHH-HHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH----HHhhC-C-----------
Q 038550 259 PVSYIAI-LTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK----LIKNL-P----------- 321 (423)
Q Consensus 259 ~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~-~----------- 321 (423)
......+ ++.+....-.+..-.++..+.+.|+++-. ..+...|-.....+-..+ +...+ +
T Consensus 287 ~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf---~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 287 HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVF---KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGK 363 (700)
T ss_pred cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchh---hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccc
Confidence 1000000 11111122233444566666666765433 333333322221111111 11111 1
Q ss_pred -CCCCHhHH--HHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 322 -VEPDANIW--GALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 322 -~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
-.|....| -.++..+-..|+++.|...++.+...-|.-+..|..-++.+...|.+++|..++++..+.+.
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 14555544 44667889999999999999999999999888999999999999999999999999877654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-08 Score=81.82 Aligned_cols=284 Identities=13% Similarity=0.088 Sum_probs=187.1
Q ss_pred HHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHH-HHHHHHHh
Q 038550 96 TNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFM-GAISACAN 170 (423)
Q Consensus 96 ~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~~~ 170 (423)
+++.+.-+.+..++++|++++ +..+++....+.|..+|-...++..|-..|+++-.. .|...-|. .-...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 344444456666777777776 333445566677777777777888888888877663 45554443 23445566
Q ss_pred HhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC-CCChhhHHHHHHHHhccCCHHHHHHHHHH
Q 038550 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP-VKDSASWNTLILGYGMLGEVDTAINLFEA 249 (423)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 249 (423)
.+.+..|.++...|....- ........-.......+++..+..+.+..+ +.+..+.+.......+.|+++.|.+-|+.
T Consensus 91 A~i~ADALrV~~~~~D~~~-L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDNPA-LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred hcccHHHHHHHHHhcCCHH-HHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHH
Confidence 6777777777776654310 000111111122345678888888888887 35566666666666788999999999998
Q ss_pred HHHc-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC-------------CCh--------hhHHHHHHH----
Q 038550 250 MRED-GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK-------------PTE--------MHYACMVDL---- 303 (423)
Q Consensus 250 m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~--------~~~~~l~~~---- 303 (423)
..+. |.. ....|+..+. ..+.|+.+.|.++..+++++|++ ||. ..-+.++.+
T Consensus 170 AlqvsGyq-pllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLK 247 (459)
T KOG4340|consen 170 ALQVSGYQ-PLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLK 247 (459)
T ss_pred HHhhcCCC-chhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhh
Confidence 8775 444 4567776664 44668889999999998887754 221 112233333
Q ss_pred ---HHhcCChHHHHHHHhhCC----CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 038550 304 ---LGRAGLMEDAVKLIKNLP----VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKW 376 (423)
Q Consensus 304 ---~~~~~~~~~a~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 376 (423)
+.+.|+++.|.+.+..|+ ...|+.|...+.-. -..+++.+..+-+.-+.+.+|-.+.+|..++..||+..-+
T Consensus 248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHH
Confidence 357789999999999883 33577776555322 2345566666777777888888888999999999999999
Q ss_pred hHHHHHHHH
Q 038550 377 DEASKVREL 385 (423)
Q Consensus 377 ~~A~~~~~~ 385 (423)
+-|..++-+
T Consensus 327 ~lAADvLAE 335 (459)
T KOG4340|consen 327 DLAADVLAE 335 (459)
T ss_pred hHHHHHHhh
Confidence 998888754
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.8e-07 Score=80.20 Aligned_cols=145 Identities=14% Similarity=0.093 Sum_probs=98.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH--------HHHHcCCCCChhhHHHHHHHHHhcCCh
Q 038550 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFD--------EMQADSVKPTEMHYACMVDLLGRAGLM 310 (423)
Q Consensus 239 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~ 310 (423)
.+..+.+++...-+....-........+......|+++.|.+++. .+.+.+..|. +...+...+.+.++-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCC
Confidence 466777777776665322223455566677888999999999999 5555444454 445566777777776
Q ss_pred HHHHHHHhhC--------CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHH
Q 038550 311 EDAVKLIKNL--------PVEPD-ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASK 381 (423)
Q Consensus 311 ~~a~~~~~~~--------~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 381 (423)
+.|..++.+. ...+. ..++..+...-.+.|+-++|..+++++.+.+|.+..+...++.+|++.. .+.|..
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~ 512 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAES 512 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHH
Confidence 6666665544 11221 2233444444567799999999999999999999999999998887753 456666
Q ss_pred HHHHH
Q 038550 382 VRELM 386 (423)
Q Consensus 382 ~~~~m 386 (423)
+-+.+
T Consensus 513 l~k~L 517 (652)
T KOG2376|consen 513 LSKKL 517 (652)
T ss_pred HhhcC
Confidence 55443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-07 Score=78.59 Aligned_cols=287 Identities=15% Similarity=0.064 Sum_probs=154.4
Q ss_pred HHHHHHhcCChHHHHHHh-chhcCCcchHHH---HHHHHhcCCChhhHHHHHHHHHhcCCCCchhhH-HHHHHHHHhHhh
Q 038550 99 LTDMYAKCGCLNLAQNVF-NISFRDEVSYNI---LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF-MGAISACANLAA 173 (423)
Q Consensus 99 l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~~~ 173 (423)
+...+...|++.+|+..| ...+-|+..|-+ -...|...|....|+.-+.+.++ ++||-..- .--...+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhccc
Confidence 444455555555555555 222223333322 23455555665556555555555 34543221 112233455566
Q ss_pred HHhhhHHHHHHHHhccCcch------------H--HHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhc
Q 038550 174 IKQGKEIHGVTIRKHLHTHL------------F--VANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGM 236 (423)
Q Consensus 174 ~~~a~~~~~~~~~~~~~~~~------------~--~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 236 (423)
++.|..-|+.+++..+.... . .....+..+.-.|+...|+.+...+. ..|...|..-..+|..
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh
Confidence 66666666655554321110 0 11122333445566666666666554 3366666666777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhh----HHHH---------HHH
Q 038550 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMH----YACM---------VDL 303 (423)
Q Consensus 237 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l---------~~~ 303 (423)
.|++..|+.=++...+.. .-+..++..+-..+...|+.+.++...++..+. .|+... |..| +..
T Consensus 202 ~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~ 278 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQ 278 (504)
T ss_pred cCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 777777766665554432 224445555555666667777777666666653 344321 1111 112
Q ss_pred HHhcCChHHHHHHHhhC-CCCCC-----HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChh
Q 038550 304 LGRAGLMEDAVKLIKNL-PVEPD-----ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWD 377 (423)
Q Consensus 304 ~~~~~~~~~a~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 377 (423)
..+.+++.++++..+.. ...|. ...+..+-.++...|++.+|++...++++.+|++..++.--+.+|.-...|+
T Consensus 279 ~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD 358 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYD 358 (504)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHH
Confidence 23445555555554443 33443 1233444455666777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhcc
Q 038550 378 EASKVRELMKSRE 390 (423)
Q Consensus 378 ~A~~~~~~m~~~~ 390 (423)
+|+.-|++..+.+
T Consensus 359 ~AI~dye~A~e~n 371 (504)
T KOG0624|consen 359 DAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHhcC
Confidence 7777777766543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.5e-09 Score=90.26 Aligned_cols=151 Identities=15% Similarity=0.111 Sum_probs=62.6
Q ss_pred HHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCcHHH
Q 038550 202 FYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH----GGLVEK 277 (423)
Q Consensus 202 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~ 277 (423)
++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. ...+.+
T Consensus 111 i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~ 185 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQD 185 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCH
T ss_pred HHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHH
Confidence 344445555555555443 23444444445555555555555555555442 112 222222222211 123445
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCCh-hHHHHHHHHHHh
Q 038550 278 GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNV-ELGAWAAEHLFM 354 (423)
Q Consensus 278 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 354 (423)
|..+|+++.+. .+++..+.+.+..++...|++++|.+++.+. ...| ++.+...++......|+. +.+.+.+.++..
T Consensus 186 A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 186 AFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 55555554332 2344444444444445555555555544443 2222 333333444444444443 334444444444
Q ss_pred cCCC
Q 038550 355 LKPQ 358 (423)
Q Consensus 355 ~~p~ 358 (423)
..|.
T Consensus 265 ~~p~ 268 (290)
T PF04733_consen 265 SNPN 268 (290)
T ss_dssp HTTT
T ss_pred hCCC
Confidence 4444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-07 Score=83.79 Aligned_cols=368 Identities=14% Similarity=0.051 Sum_probs=205.7
Q ss_pred cccCCcchhHHhhcccCC---cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCc-hhHHHHHHHhhcCCCCccHH
Q 038550 3 AKSSRPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS-VTLTNVLPACARGHFLRPGK 78 (423)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~ 78 (423)
+..|+++.|+.+|-+... +|...|+-=..+|...|++++|++=-.+-++. .|+- ..|.....++.-.|++++|.
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHH
Confidence 467999999999987543 67778888888999999999998876666653 4553 58888899999999999999
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHhch------hcC--------CcchHHHHHHHHhcCC-------
Q 038550 79 EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI------SFR--------DEVSYNILIVGYSQTS------- 137 (423)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~------~~~--------~~~~~~~l~~~~~~~~------- 137 (423)
.-|.+-++.. +.+...++.+..++... . .+.+.|.. ... ....|..++..+-+..
T Consensus 91 ~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 91 LAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHhhcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999988775 45566777777776211 1 11223310 011 1122333333221110
Q ss_pred ChhhHHHHHHHHHh--------cC-------CCC---------c-------------hhhHHHHHHHHHhHhhHHhhhHH
Q 038550 138 DCSESLSLFSEMRL--------LG-------MKH---------D-------------VVSFMGAISACANLAAIKQGKEI 180 (423)
Q Consensus 138 ~~~~a~~~~~~m~~--------~~-------~~~---------~-------------~~~~~~ll~~~~~~~~~~~a~~~ 180 (423)
..+...+..-.+.. .| ..| . ..-...+.++..+..+++.+.+-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 01111111111100 00 011 0 01234455566666777777777
Q ss_pred HHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCCh---hhH-------HHHHHHHhccCCHHHHHHHHHHH
Q 038550 181 HGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS---ASW-------NTLILGYGMLGEVDTAINLFEAM 250 (423)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~-------~~li~~~~~~g~~~~a~~~~~~m 250 (423)
+....... .+..-++....+|...|....+...-+...+... .-| ..+..+|.+.++++.++..|.+.
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 77776655 4445555666677777777666555444332111 112 22334566667788888888776
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHh
Q 038550 251 REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE-MHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DAN 327 (423)
Q Consensus 251 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~ 327 (423)
......|+.. .+....+++........-. .|.. .-...-...+.+.|++..|+..|.++ ...| |..
T Consensus 325 Lte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 325 LTEHRTPDLL---------SKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred hhhhcCHHHH---------HHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 5543333321 1222223333322222221 1211 11111134455666666666666665 2334 455
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 328 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
.|..-.-+|.+.|.+..|+.-.+...+++|.....|..=+.++....+|+.|.+.|.+-.+.
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666666666666666666666666666655543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.9e-07 Score=80.66 Aligned_cols=193 Identities=13% Similarity=-0.008 Sum_probs=108.5
Q ss_pred HHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhc
Q 038550 198 SILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV-GYDP--VSYIAILTACSH 271 (423)
Q Consensus 198 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~--~~~~~ll~~~~~ 271 (423)
.+...+...|++++|...+++.. +.+...+..+...+...|++++|...+++...... .|+. ..|..+...+..
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 44456667777777777776554 23455666667777777777777777777665422 1222 234456666777
Q ss_pred cCcHHHHHHHHHHHHHcCC-CCChhhH-H--HHHHHHHhcCChHHHHHH---HhhC----CCCCCHhHHHHHHHHHHhcC
Q 038550 272 GGLVEKGKKYFDEMQADSV-KPTEMHY-A--CMVDLLGRAGLMEDAVKL---IKNL----PVEPDANIWGALLGACRIYG 340 (423)
Q Consensus 272 ~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~~a~~~---~~~~----~~~~~~~~~~~l~~~~~~~~ 340 (423)
.|++++|..+++++..... .+..... + .++.-+...|....+.+. .... ..............++...|
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 278 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG 278 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC
Confidence 7888888877777654321 1111111 1 222222333322222222 1111 00111122224556677888
Q ss_pred ChhHHHHHHHHHHhcCCC---------CcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 341 NVELGAWAAEHLFMLKPQ---------HCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 341 ~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
+.+.|...++.+....-. ........+.++...|++++|.+.+.......
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 888888888887653211 22334455566789999999999988887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.4e-06 Score=77.15 Aligned_cols=175 Identities=13% Similarity=0.041 Sum_probs=101.8
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC---------
Q 038550 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD---PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP--------- 292 (423)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--------- 292 (423)
..|-.+.+.|-..|+.+.|..+|++..+...+-- ..+|..-...-.+..+++.|.++++.....--.|
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 3467777777788888888888888776543311 2344444444556677777777777766431110
Q ss_pred --------ChhhHHHHHHHHHhcCChHHHHHHHhhC-CCC-CCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCc
Q 038550 293 --------TEMHYACMVDLLGRAGLMEDAVKLIKNL-PVE-PDANIWGALLGACRIYGNVELGAWAAEHLFMLKP--QHC 360 (423)
Q Consensus 293 --------~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~~ 360 (423)
+...|...++.--..|-++....+++++ .++ ..+.+.......+-.+.-++++.++|++.+.+.+ .--
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 1223444444445566777777777766 211 1222222233334456667888888888888763 333
Q ss_pred chHHHHHHHHHh---cCChhHHHHHHHHHHhccccCCCCCccc
Q 038550 361 GYYILLSNMYAE---AGKWDEASKVRELMKSREAKKNPGCSWV 400 (423)
Q Consensus 361 ~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 400 (423)
..|+..+.-+.+ ....+.|+.+|++..+ |.+|...-+..
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiy 589 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIY 589 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Confidence 455554444432 3467888889988887 65555444333
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.4e-08 Score=85.21 Aligned_cols=146 Identities=13% Similarity=0.038 Sum_probs=64.5
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH----hcCC
Q 038550 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG----RAGL 309 (423)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~ 309 (423)
+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++. -.+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchh
Confidence 34445555555544321 13334444445555555555555555555442 122 12222222222 1223
Q ss_pred hHHHHHHHhhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh-hHHHHHHHHH
Q 038550 310 MEDAVKLIKNL--PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKW-DEASKVRELM 386 (423)
Q Consensus 310 ~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m 386 (423)
+.+|.-+|+++ ...+++.+.+.+..+....|++++|..+++++.+.+|.++.+...++.+....|+. +.+.+++.++
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 55555555555 22344445555555555555555555555555555555555555555444444444 3344444444
Q ss_pred Hh
Q 038550 387 KS 388 (423)
Q Consensus 387 ~~ 388 (423)
..
T Consensus 263 ~~ 264 (290)
T PF04733_consen 263 KQ 264 (290)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1e-08 Score=90.78 Aligned_cols=219 Identities=13% Similarity=0.043 Sum_probs=170.6
Q ss_pred HHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHH
Q 038550 167 ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTA 243 (423)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a 243 (423)
-+.+.|++.+|.-.|+..++.++ -+...|..|.......++-..|+..+.+.. +.|......|.-+|...|.-..|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 34567888889889998888765 346777778888888888888888877665 44677888888899999999999
Q ss_pred HHHHHHHHHcCCC-----C---CHHHHHHHHHHHhccCcHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCChHHHH
Q 038550 244 INLFEAMREDGVG-----Y---DPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAV 314 (423)
Q Consensus 244 ~~~~~~m~~~~~~-----p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 314 (423)
+..++..+....+ + +...-.. ..+.....+....++|-++... +..+|..++..|.-.|--.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9999987654311 0 0000000 1222333444555666665555 55588889999999999999999999
Q ss_pred HHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 315 KLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 315 ~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
+.|+.+ .++| |..+||.|...+....+.++|+..|.+++++.|.-.++...|+..|...|.|++|...|-....
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999987 7788 6779999999999999999999999999999999999999999999999999999998876544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.8e-06 Score=75.17 Aligned_cols=353 Identities=10% Similarity=-0.001 Sum_probs=184.4
Q ss_pred HHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChH
Q 038550 31 ANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLN 110 (423)
Q Consensus 31 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 110 (423)
+.+..+|++++|.+...++...+ +-+...+..-+-++.+.+.++.|+.+.+.-... ..+..-+--=..+..+.+..+
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHH
Confidence 33455556666666666665543 233344455555555555555555433321100 000000001112233455666
Q ss_pred HHHHHhchhcCCcc-hHHHHHHHHhcCCChhhHHHHHHHHHhcC----------------------------CCCchhhH
Q 038550 111 LAQNVFNISFRDEV-SYNILIVGYSQTSDCSESLSLFSEMRLLG----------------------------MKHDVVSF 161 (423)
Q Consensus 111 ~a~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----------------------------~~~~~~~~ 161 (423)
+|...+....++.. +...-...+-+.+++++|+++|+.+.+++ ..| ..+|
T Consensus 97 ealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~-e~sy 175 (652)
T KOG2376|consen 97 EALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP-EDSY 175 (652)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC-cchH
Confidence 66655543333222 34444455555666666666665553332 122 2244
Q ss_pred HHHHH---HHHhHhhHHhhhHHHHHHHHhcc-------------CcchH-HHHHHHHHHHhcCCHHHHHHHhccCCC---
Q 038550 162 MGAIS---ACANLAAIKQGKEIHGVTIRKHL-------------HTHLF-VANSILDFYTRSGRIDLANKIFDCLPV--- 221 (423)
Q Consensus 162 ~~ll~---~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~--- 221 (423)
..+.+ .+...|++.+|+++++...+.+. ..... .-..+.-++...|+-++|..++..+.+
T Consensus 176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 176 ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence 44433 44567899999999988843221 11111 112344567778999999998876542
Q ss_pred CCh----hhHHHHHHHHhc---------------------------------------------cCCHHHHHHHHHHHHH
Q 038550 222 KDS----ASWNTLILGYGM---------------------------------------------LGEVDTAINLFEAMRE 252 (423)
Q Consensus 222 ~~~----~~~~~li~~~~~---------------------------------------------~g~~~~a~~~~~~m~~ 252 (423)
+|. ..-|.++..-.. .+..+.+.++.....
T Consensus 256 ~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp- 334 (652)
T KOG2376|consen 256 ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP- 334 (652)
T ss_pred CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC-
Confidence 111 111111111000 011111111111100
Q ss_pred cCCCCCHHHHHHHHHHHh--ccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHh--------hC-C
Q 038550 253 DGVGYDPVSYIAILTACS--HGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK--------NL-P 321 (423)
Q Consensus 253 ~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~-~ 321 (423)
+-.|. ..+..++..+. +...+..+..++....+....-...+...+++.....|+++.|.+++. .+ .
T Consensus 335 -~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~ 412 (652)
T KOG2376|consen 335 -GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE 412 (652)
T ss_pred -ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh
Confidence 11222 23334443322 223466777777777665322234566667788889999999999988 33 2
Q ss_pred CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 322 VEPDANIWGALLGACRIYGNVELGAWAAEHLFML----KPQ---HCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 322 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
+.-.+.+...+...+.+.++.+.|..++..+..- .+. ...++..++..-.+.|+-++|..+++++.+.+
T Consensus 413 ~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 413 AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC
Confidence 3344556666777778888888888888777552 122 22345555666678899999999999998754
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.9e-07 Score=74.82 Aligned_cols=351 Identities=12% Similarity=0.030 Sum_probs=196.5
Q ss_pred HHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCh
Q 038550 30 VANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCL 109 (423)
Q Consensus 30 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 109 (423)
+.-+...+++..|+.+++.-...+-.....+-.-+..++.+.|++++|...+..+.+.. .++...+-.|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 56677888999999999877654432222333334566778999999999999988755 56667777777777788889
Q ss_pred HHHHHHhchhcCCcchHHHHHHHHhc------------------------------CCChhhHHHHHHHHHhcCCCCchh
Q 038550 110 NLAQNVFNISFRDEVSYNILIVGYSQ------------------------------TSDCSESLSLFSEMRLLGMKHDVV 159 (423)
Q Consensus 110 ~~a~~~~~~~~~~~~~~~~l~~~~~~------------------------------~~~~~~a~~~~~~m~~~~~~~~~~ 159 (423)
.+|..+-...+.++..-..|...-.+ .-.+.+|+++|++.+.. .|+-.
T Consensus 108 ~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~ 185 (557)
T KOG3785|consen 108 IEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYI 185 (557)
T ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chhhh
Confidence 99888874444433332223222222 33455666666666543 23333
Q ss_pred hHHHHH-HHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhc--CCHH--HHHHHhccCC--------------
Q 038550 160 SFMGAI-SACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS--GRID--LANKIFDCLP-------------- 220 (423)
Q Consensus 160 ~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~--~A~~~~~~~~-------------- 220 (423)
..+.-+ -+|.+..-++-+.+++..-++.-+ .+....|.......+. |+.. +-..+.+...
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q~p-dStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNL 264 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQFP-DSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNL 264 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHhCC-CcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCe
Confidence 443322 233455555555555555444322 2222223222222221 1111 1111111111
Q ss_pred -----------------CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HhccCcHHHH
Q 038550 221 -----------------VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA-----CSHGGLVEKG 278 (423)
Q Consensus 221 -----------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-----~~~~~~~~~a 278 (423)
+.-+..-..++-.|.+.+++.+|..+.+++.- ..|-....-.+..+ ........-|
T Consensus 265 VvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiA 342 (557)
T KOG3785|consen 265 VVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIA 342 (557)
T ss_pred EEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 11122233344456677788777777665431 12222111111111 1112234455
Q ss_pred HHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 279 KKYFDEMQADSVKPT-EMHYACMVDLLGRAGLMEDAVKLIKNLP--VEPDANIWGALLGACRIYGNVELGAWAAEHLFML 355 (423)
Q Consensus 279 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 355 (423)
.+.|+..-..+..-| ..--.++..++.-..++++.+-.++.+. +..|....-.+..+.+..|++.+|+++|-++...
T Consensus 343 qqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 343 QQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh
Confidence 565655444433322 2223344555556667777777777662 2333344445778999999999999999998877
Q ss_pred CCCCcchH-HHHHHHHHhcCChhHHHHHHHHH
Q 038550 356 KPQHCGYY-ILLSNMYAEAGKWDEASKVRELM 386 (423)
Q Consensus 356 ~p~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m 386 (423)
+-.+..+| ..|+++|.+.|+.+-|+.++-++
T Consensus 423 ~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 423 EIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 75555555 46789999999999998887655
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.7e-06 Score=76.39 Aligned_cols=56 Identities=18% Similarity=-0.084 Sum_probs=31.5
Q ss_pred HHHHHHhcCChHHHHHHHhhCC---CC----C----CHhHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 300 MVDLLGRAGLMEDAVKLIKNLP---VE----P----DANIWGALLGACRIYGNVELGAWAAEHLFML 355 (423)
Q Consensus 300 l~~~~~~~~~~~~a~~~~~~~~---~~----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 355 (423)
...++...|+.+.|...++.+. .. . .........-++...|+.++|.+.+..+...
T Consensus 270 ~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 270 AALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455566777777777776651 01 0 0111112223456778888888888777653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.5e-07 Score=84.61 Aligned_cols=350 Identities=15% Similarity=0.081 Sum_probs=198.3
Q ss_pred ccccCCcchhHHhhcccCCcChhhHHHHHHHHHhCCChHHHHHHHhhchhC-C--------CCCCchhHHHHHHHhhcCC
Q 038550 2 YAKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIH-N--------EFPNSVTLTNVLPACARGH 72 (423)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~--------~~p~~~~~~~l~~~~~~~~ 72 (423)
|.--|+.++|.+-.+.+ ++...|..|.+.|.+.++++-|.-.+-.|... | -.|+ .+-..+.-.....|
T Consensus 738 yvtiG~MD~AfksI~~I--kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI--KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELG 814 (1416)
T ss_pred EEEeccHHHHHHHHHHH--hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHh
Confidence 44457777777666666 45577888888888888888877777666432 1 0122 22222333345677
Q ss_pred CCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHhchhc--CCcchHHHHHHHHhcCCChhhHHHHHHHHH
Q 038550 73 FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISF--RDEVSYNILIVGYSQTSDCSESLSLFSEMR 150 (423)
Q Consensus 73 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 150 (423)
.+++|+.+|++-.+.+ .|-..|-..|.+++|.++-+... .=..||.....-+-..++.+.|++.|++..
T Consensus 815 MlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 815 MLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAG 885 (1416)
T ss_pred hHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 8888888888776543 34556777888888888873221 123456666666667777888877776532
Q ss_pred ----------hcC---------CCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHH
Q 038550 151 ----------LLG---------MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDL 211 (423)
Q Consensus 151 ----------~~~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 211 (423)
... -.-|...|.-...-+-..|+.+.|+.+|+.... |-+++...|-.|+.++
T Consensus 886 ~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~k 956 (1416)
T KOG3617|consen 886 VHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDK 956 (1416)
T ss_pred ChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchH
Confidence 111 011222222233333444555555555554433 2345555566666666
Q ss_pred HHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcC--CC------CCHHHHHHHHHHHhccCcHHHHHHHHH
Q 038550 212 ANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDG--VG------YDPVSYIAILTACSHGGLVEKGKKYFD 283 (423)
Q Consensus 212 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~------p~~~~~~~ll~~~~~~~~~~~a~~~~~ 283 (423)
|-++-++-. |......+.+.|-..|++.+|...|.+..... ++ .+...+|.. ......+.-.|-.+|+
T Consensus 957 Aa~iA~esg--d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nla--l~s~~~d~v~aArYyE 1032 (1416)
T KOG3617|consen 957 AARIAEESG--DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLA--LMSGGSDLVSAARYYE 1032 (1416)
T ss_pred HHHHHHhcc--cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH--hhcCchhHHHHHHHHH
Confidence 666655433 55666677788888888888888877654210 00 011111110 1112223333334443
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH-Hhh------------CCCCCCHhHHHHHHHHHHhcCChhHHHHHHH
Q 038550 284 EMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL-IKN------------LPVEPDANIWGALLGACRIYGNVELGAWAAE 350 (423)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 350 (423)
+. |.. +..-+..|-++|.+.+|+++ |+. +.-..|+...+.-...+....++++|..++-
T Consensus 1033 e~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~ 1104 (1416)
T KOG3617|consen 1033 EL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLC 1104 (1416)
T ss_pred Hc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 32 211 12234557777887777765 221 1223467777777788888888888877665
Q ss_pred HHHhc----------------------CCC---C------cchHHHHHHHHHhcCChhHHHHHHH
Q 038550 351 HLFML----------------------KPQ---H------CGYYILLSNMYAEAGKWDEASKVRE 384 (423)
Q Consensus 351 ~~~~~----------------------~p~---~------~~~~~~l~~~~~~~g~~~~A~~~~~ 384 (423)
.+.+. -|. . ......+++.|.++|.|-.|.+-|.
T Consensus 1105 ~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1105 LAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHh
Confidence 44331 011 0 1346678888999998877765443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.1e-06 Score=87.12 Aligned_cols=323 Identities=11% Similarity=-0.041 Sum_probs=193.5
Q ss_pred hhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHhch----hcC-C---c-----chHHHHHHHHh
Q 038550 68 CARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI----SFR-D---E-----VSYNILIVGYS 134 (423)
Q Consensus 68 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~-~---~-----~~~~~l~~~~~ 134 (423)
....|+++.+...++.+.......++.........+...|+++++...+.. ... + . .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 444566666666655542111112222333444556677888888877721 111 0 1 11222334556
Q ss_pred cCCChhhHHHHHHHHHhcCCCCch----hhHHHHHHHHHhHhhHHhhhHHHHHHHHhcc-----CcchHHHHHHHHHHHh
Q 038550 135 QTSDCSESLSLFSEMRLLGMKHDV----VSFMGAISACANLAAIKQGKEIHGVTIRKHL-----HTHLFVANSILDFYTR 205 (423)
Q Consensus 135 ~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~ 205 (423)
..|+++.|...+++....-...+. ...+.+...+...|+++.|...+++...... .........+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 788999999999887663111121 2334455566778899999888887765321 1112344556677888
Q ss_pred cCCHHHHHHHhccCCC-------C----ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHHh
Q 038550 206 SGRIDLANKIFDCLPV-------K----DSASWNTLILGYGMLGEVDTAINLFEAMREDG--VGY--DPVSYIAILTACS 270 (423)
Q Consensus 206 ~~~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p--~~~~~~~ll~~~~ 270 (423)
.|+++.|...+++... + ....+..+...+...|++++|...+++..... ..+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 8999999888765431 1 12234445556677799999998888865421 112 2234444556677
Q ss_pred ccCcHHHHHHHHHHHHHcCC-CCChhhH-----HHHHHHHHhcCChHHHHHHHhhCCC-C-CCH----hHHHHHHHHHHh
Q 038550 271 HGGLVEKGKKYFDEMQADSV-KPTEMHY-----ACMVDLLGRAGLMEDAVKLIKNLPV-E-PDA----NIWGALLGACRI 338 (423)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~----~~~~~l~~~~~~ 338 (423)
..|+++.|...++......- ......+ ...+..+...|+.+.|...+..... . ... ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 88999999988888755310 1111111 1122344567888999888876621 1 111 113456677888
Q ss_pred cCChhHHHHHHHHHHhcC------CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 339 YGNVELGAWAAEHLFMLK------PQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 339 ~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
.|+.++|...++++.... +....+...++.++.+.|+.++|...+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899999999998887642 1122356677788889999999999988887654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.6e-05 Score=72.13 Aligned_cols=215 Identities=13% Similarity=0.103 Sum_probs=139.4
Q ss_pred hhHHhhhHHHHHHHHh-cc----CcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCCh-------hhHHHHHHHHhccCC
Q 038550 172 AAIKQGKEIHGVTIRK-HL----HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS-------ASWNTLILGYGMLGE 239 (423)
Q Consensus 172 ~~~~~a~~~~~~~~~~-~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~ 239 (423)
|+..+....+.++++. ++ -.....|..+...|-..|+++.|..+|++..+-+- .+|-.....=.+..+
T Consensus 361 ~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~ 440 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHEN 440 (835)
T ss_pred CChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhh
Confidence 4444555555555542 11 11234566788899999999999999998875433 344444555556788
Q ss_pred HHHHHHHHHHHHHcCCC----------C-------CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038550 240 VDTAINLFEAMREDGVG----------Y-------DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302 (423)
Q Consensus 240 ~~~a~~~~~~m~~~~~~----------p-------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 302 (423)
++.|+.+++......-. | +...|...+......|-++....+|+++.+..+.......| ...
T Consensus 441 ~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAm 519 (835)
T KOG2047|consen 441 FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAM 519 (835)
T ss_pred HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHH
Confidence 99999988876542111 1 22345666666666788999999999999885432222222 223
Q ss_pred HHHhcCChHHHHHHHhhC-C-C-CCCH-hHHHHHHHHHHh---cCChhHHHHHHHHHHhcCCCCc--chHHHHHHHHHhc
Q 038550 303 LLGRAGLMEDAVKLIKNL-P-V-EPDA-NIWGALLGACRI---YGNVELGAWAAEHLFMLKPQHC--GYYILLSNMYAEA 373 (423)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~-~-~-~~~~-~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~~ 373 (423)
.+-...-++++.+++++- . + -|++ .+|+..+.-+.+ ....+.|..+|+++++.-|+.. .+|...+..-.+-
T Consensus 520 fLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~ 599 (835)
T KOG2047|consen 520 FLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEH 599 (835)
T ss_pred HHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 345566789999999875 2 2 2443 478888866543 2468999999999999766432 2244444444566
Q ss_pred CChhHHHHHHHHHH
Q 038550 374 GKWDEASKVRELMK 387 (423)
Q Consensus 374 g~~~~A~~~~~~m~ 387 (423)
|....|+.++++..
T Consensus 600 GLar~amsiyerat 613 (835)
T KOG2047|consen 600 GLARHAMSIYERAT 613 (835)
T ss_pred hHHHHHHHHHHHHH
Confidence 88888888888854
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-07 Score=76.34 Aligned_cols=119 Identities=9% Similarity=0.070 Sum_probs=90.0
Q ss_pred cCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHH-HhcCC--hhHHH
Q 038550 272 GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGAC-RIYGN--VELGA 346 (423)
Q Consensus 272 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~-~~~~~--~~~a~ 346 (423)
.++.+++...++...+.. +.+...|..+...|...|++++|...|++. .+.| +...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 556667777777766654 567777888888888888888888888877 4555 566666666653 56666 48888
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 347 WAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 347 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
.+++++.+.+|.++.++..++..+.+.|++++|+..++++.+...
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 888888888888888888888888888888888888888877554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.9e-06 Score=86.14 Aligned_cols=356 Identities=10% Similarity=-0.010 Sum_probs=221.9
Q ss_pred cccCCcchhHHhhcccCCcChhh--HHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHH
Q 038550 3 AKSSRPAEASYLFHNIAEKNIVS--WNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEI 80 (423)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 80 (423)
...|++.+|.............. ...........|++..+..+++.+.......+..........+...|+++++...
T Consensus 352 ~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~ 431 (903)
T PRK04841 352 LAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTL 431 (903)
T ss_pred HHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHH
Confidence 35677777777666665432211 1222234556788888888877764322222333333444556678899999999
Q ss_pred HHHHHHcCC------CCc--hHHHHHHHHHHHhcCChHHHHHHhch----hcC-Cc----chHHHHHHHHhcCCChhhHH
Q 038550 81 HARIIRKGL------NFD--LFLTNALTDMYAKCGCLNLAQNVFNI----SFR-DE----VSYNILIVGYSQTSDCSESL 143 (423)
Q Consensus 81 ~~~~~~~~~------~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~-~~----~~~~~l~~~~~~~~~~~~a~ 143 (423)
+....+.-- .+. ......+...+...|++++|...++. .+. +. ...+.+...+...|+++.|.
T Consensus 432 l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~ 511 (903)
T PRK04841 432 LARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARAL 511 (903)
T ss_pred HHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 887754311 111 12223334556788999999988821 111 11 23466677788899999999
Q ss_pred HHHHHHHhcCC---CCc--hhhHHHHHHHHHhHhhHHhhhHHHHHHHHh----ccC--c-chHHHHHHHHHHHhcCCHHH
Q 038550 144 SLFSEMRLLGM---KHD--VVSFMGAISACANLAAIKQGKEIHGVTIRK----HLH--T-HLFVANSILDFYTRSGRIDL 211 (423)
Q Consensus 144 ~~~~~m~~~~~---~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~ 211 (423)
..+.+.....- .+. ..++..+...+...|+++.|...+++.... +.. + ....+..+...+...|++++
T Consensus 512 ~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 591 (903)
T PRK04841 512 AMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDE 591 (903)
T ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99988865311 111 234455666778889999999998877653 211 1 22334455667778899999
Q ss_pred HHHHhccCCC------C--ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcC--CCCCHH--HH--HHHHHHHhccCcHHH
Q 038550 212 ANKIFDCLPV------K--DSASWNTLILGYGMLGEVDTAINLFEAMREDG--VGYDPV--SY--IAILTACSHGGLVEK 277 (423)
Q Consensus 212 A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~--~~--~~ll~~~~~~~~~~~ 277 (423)
|...+++... + ....+..+...+...|+++.|.+.+.+..... ...... .. ...+..+...|+.+.
T Consensus 592 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 671 (903)
T PRK04841 592 AEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEA 671 (903)
T ss_pred HHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHH
Confidence 9988876531 1 12344456667788999999999998875421 111110 10 112234455789999
Q ss_pred HHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHhhC-------CCCCC-HhHHHHHHHHHHhcCChhHHH
Q 038550 278 GKKYFDEMQADSVKPT---EMHYACMVDLLGRAGLMEDAVKLIKNL-------PVEPD-ANIWGALLGACRIYGNVELGA 346 (423)
Q Consensus 278 a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~~~~a~ 346 (423)
|...+........... ...+..+..++...|+.++|...+++. +..++ ..+...+..++...|+.++|.
T Consensus 672 A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~ 751 (903)
T PRK04841 672 AANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQ 751 (903)
T ss_pred HHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9988777554311111 111345667788999999999988876 22222 235666678889999999999
Q ss_pred HHHHHHHhcCCC
Q 038550 347 WAAEHLFMLKPQ 358 (423)
Q Consensus 347 ~~~~~~~~~~p~ 358 (423)
..++++.+....
T Consensus 752 ~~L~~Al~la~~ 763 (903)
T PRK04841 752 RVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHhCc
Confidence 999999987643
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.1e-06 Score=70.68 Aligned_cols=312 Identities=8% Similarity=0.001 Sum_probs=176.5
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHH---HHHhhcCCCCccHHHHHHHHHHcCCCCchHH-HHH
Q 038550 23 IVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNV---LPACARGHFLRPGKEIHARIIRKGLNFDLFL-TNA 98 (423)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ 98 (423)
+.-.--+...+...|++..|+.-|....+. |+..|..+ ...|...|+-..|+.-+...++. +||-.. ...
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQ 111 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHH
Confidence 344445667778888888888888877763 33444443 44577788888888888888766 566432 223
Q ss_pred HHHHHHhcCChHHHHHHhchh-cCCc------ch------------HHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchh
Q 038550 99 LTDMYAKCGCLNLAQNVFNIS-FRDE------VS------------YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159 (423)
Q Consensus 99 l~~~~~~~g~~~~a~~~~~~~-~~~~------~~------------~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 159 (423)
-...+.+.|.++.|..-|+.. ..++ .+ ....+..+...|+...|+..+..+++.. +.|..
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~ 190 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDAS 190 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhH
Confidence 345677888888888777221 1110 01 1122334445566666666666665542 44555
Q ss_pred hHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCC
Q 038550 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239 (423)
Q Consensus 160 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 239 (423)
.|..-..+|...|.+..|+.-+....+.....+...| .+...+...|+.+.++..+++..+-|+..-.+ |..-..
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~y-kis~L~Y~vgd~~~sL~~iRECLKldpdHK~C----f~~YKk 265 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHY-KISQLLYTVGDAENSLKEIRECLKLDPDHKLC----FPFYKK 265 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHH-HHHHHHHhhhhHHHHHHHHHHHHccCcchhhH----HHHHHH
Confidence 5555556666666666665555555444333322222 34444445555555544444433221111000 000001
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCChHHHHHH
Q 038550 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP---TEMHYACMVDLLGRAGLMEDAVKL 316 (423)
Q Consensus 240 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~ 316 (423)
..+....++.| ......+++.++.+-.+...+..... ....+..+..++...|++.+|++.
T Consensus 266 lkKv~K~les~----------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq 329 (504)
T KOG0624|consen 266 LKKVVKSLESA----------------EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQ 329 (504)
T ss_pred HHHHHHHHHHH----------------HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHH
Confidence 11111111111 12334566667777777766653221 123445566777788888888887
Q ss_pred HhhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcch
Q 038550 317 IKNL-PVEPD-ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGY 362 (423)
Q Consensus 317 ~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 362 (423)
-.+. .+.|| +.++..-..+|.-...++.|+.-|+.+.+.++++..+
T Consensus 330 C~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 330 CKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 7766 66665 6677777788888888899999999888888876543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-06 Score=80.71 Aligned_cols=336 Identities=13% Similarity=0.096 Sum_probs=219.1
Q ss_pred ChhhHHHHHH--HHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHc-C--------CC
Q 038550 22 NIVSWNAMVA--NFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRK-G--------LN 90 (423)
Q Consensus 22 ~~~~~~~ll~--~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--------~~ 90 (423)
|..+-..+++ .|..-|+.+.|.+-.+.++ +...|..+.+.|.+.++++-|.-.+..|... | -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 5666667764 4778899999998877665 4567999999999999999998887777532 1 11
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 038550 91 FDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN 170 (423)
Q Consensus 91 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 170 (423)
|+ .+-....-.-...|.+++|..+|+..++ |..|-..|...|.|++|+++-+.=-.-. =..||..-..-+-.
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR----~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR----YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEA 870 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHh
Confidence 21 2222222334577999999999955433 6667778888999999998876432211 23467777777778
Q ss_pred HhhHHhhhHHHHHH----------HHhc---------cCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHH
Q 038550 171 LAAIKQGKEIHGVT----------IRKH---------LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231 (423)
Q Consensus 171 ~~~~~~a~~~~~~~----------~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li 231 (423)
.++.+.|+++|++. +... -..+...|..-...+-..|+.+.|+.+|.... -|-.++
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~V 945 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMV 945 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhhe
Confidence 88899988888643 2211 12344455555666667788888888887544 467777
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC--CC--CChhhHHHHHHHHH--
Q 038550 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS--VK--PTEMHYACMVDLLG-- 305 (423)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~--~~~~~~~~l~~~~~-- 305 (423)
+..|-.|+.++|-++-++-. |....-.+...|...|++.+|..+|.+..... ++ ..-..-..|.....
T Consensus 946 rI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s 1019 (1416)
T KOG3617|consen 946 RIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMS 1019 (1416)
T ss_pred eeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Confidence 88888899999888766532 55667778889999999999999998876421 00 00001112222222
Q ss_pred hcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHH----------HhcCC-CCcchHHHHHHHHHhcC
Q 038550 306 RAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHL----------FMLKP-QHCGYYILLSNMYAEAG 374 (423)
Q Consensus 306 ~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----------~~~~p-~~~~~~~~l~~~~~~~g 374 (423)
...+.-.|-++|++.|... ......|.+.|.+.+|+++.=+- ..++| .+|.....-++.++...
T Consensus 1020 ~~~d~v~aArYyEe~g~~~-----~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~ 1094 (1416)
T KOG3617|consen 1020 GGSDLVSAARYYEELGGYA-----HKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQ 1094 (1416)
T ss_pred CchhHHHHHHHHHHcchhh-----hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHH
Confidence 2334556667777775222 22234466777777776543221 22333 45667777777788888
Q ss_pred ChhHHHHHHHHHH
Q 038550 375 KWDEASKVRELMK 387 (423)
Q Consensus 375 ~~~~A~~~~~~m~ 387 (423)
+|++|..++....
T Consensus 1095 qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1095 QYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887765543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.1e-07 Score=77.07 Aligned_cols=181 Identities=14% Similarity=-0.000 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHhccCCC--C-Ch---hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CC-HHHHHH
Q 038550 193 LFVANSILDFYTRSGRIDLANKIFDCLPV--K-DS---ASWNTLILGYGMLGEVDTAINLFEAMREDGVG-YD-PVSYIA 264 (423)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~-~~~~~~ 264 (423)
...+..+...+.+.|+++.|...|+++.. | +. .++..+..++...|++++|...++++.+.... |. ..++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 33444555566666666666666665542 1 11 24455566666666666666666666654221 11 013333
Q ss_pred HHHHHhcc--------CcHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHH
Q 038550 265 ILTACSHG--------GLVEKGKKYFDEMQADSVKPTE-MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGA 335 (423)
Q Consensus 265 ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~ 335 (423)
+..++... |++++|.+.++.+.... |+. ..+..+..... ..... ......+...
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~a~~ 175 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNRL-----------AGKELYVARF 175 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHHH-----------HHHHHHHHHH
Confidence 33444333 55666666666666542 222 12211111100 00000 0011245567
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 336 CRIYGNVELGAWAAEHLFMLKPQHC---GYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 336 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
+...|++++|+..++++.+..|.++ ..+..++.++.+.|++++|..+++.+....
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 8899999999999999999877654 678899999999999999999998887643
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.7e-06 Score=72.87 Aligned_cols=336 Identities=13% Similarity=-0.002 Sum_probs=190.1
Q ss_pred HHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCc-hHHHHHHHHHHHhcCCh
Q 038550 31 ANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFD-LFLTNALTDMYAKCGCL 109 (423)
Q Consensus 31 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 109 (423)
.+....|+++.|+.+|.+.+... ++|...|..-..++++.|++++|.+--.+-++. .|+ +..|.....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 34567788888888888887764 347778888888888888888888776666655 444 45677788888888888
Q ss_pred HHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHH-----HHHhHhhHHhhhHH
Q 038550 110 NLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAIS-----ACANLAAIKQGKEI 180 (423)
Q Consensus 110 ~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~-----~~~~~~~~~~a~~~ 180 (423)
++|+..| +..+.|...++.+..++.. +.+. +.. ..++..+..+.. .+.....+. .+
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~----~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~---~~ 151 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLE----DYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYV---KI 151 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhH----HHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHH---HH
Confidence 8888888 3345566667777766611 1111 111 011111111110 011111111 11
Q ss_pred HHHHHHhccCcchHH---HHHHHHHHHhcCCHHH----HHHHh--ccCCCC----------------------ChhhHHH
Q 038550 181 HGVTIRKHLHTHLFV---ANSILDFYTRSGRIDL----ANKIF--DCLPVK----------------------DSASWNT 229 (423)
Q Consensus 181 ~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~----A~~~~--~~~~~~----------------------~~~~~~~ 229 (423)
++.+.. ++ .+... ...++.+.......+. +.... ..+..| -..-...
T Consensus 152 l~~~~~-~p-~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~ 229 (539)
T KOG0548|consen 152 LEIIQK-NP-TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKE 229 (539)
T ss_pred HHHhhc-Cc-HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHH
Confidence 111111 00 00000 0011111111000000 00000 000000 0112445
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHH-------HHH
Q 038550 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC-------MVD 302 (423)
Q Consensus 230 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~ 302 (423)
+..+..+..+++.|.+-+....+.. -+..-++....+|...|.+.++...-....+.|-. ...-|+. +..
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhh
Confidence 6666667777888888888777654 24444455556677777777776666666555421 2222222 233
Q ss_pred HHHhcCChHHHHHHHhhC---C------------------------CCCCHh-HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 303 LLGRAGLMEDAVKLIKNL---P------------------------VEPDAN-IWGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~---~------------------------~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
+|.+.++++.++..|.+. . +.|... -...-...+.+.|++..|+..|.+++.
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 455566777777777654 1 223221 111123667899999999999999999
Q ss_pred cCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 355 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
.+|+++..|...+-+|.+.|.+.+|+.-.+...+.
T Consensus 387 r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 387 RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999876666554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.8e-07 Score=70.24 Aligned_cols=104 Identities=9% Similarity=-0.066 Sum_probs=55.9
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCC
Q 038550 264 AILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGN 341 (423)
Q Consensus 264 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~ 341 (423)
.+..++...|++++|...|+.+.... +.+...|..+..++...|++++|...|++. ...| +...+..+..++...|+
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence 34445555555555555555555542 334455555555555555555555555555 3333 44455555555555555
Q ss_pred hhHHHHHHHHHHhcCCCCcchHHHHHH
Q 038550 342 VELGAWAAEHLFMLKPQHCGYYILLSN 368 (423)
Q Consensus 342 ~~~a~~~~~~~~~~~p~~~~~~~~l~~ 368 (423)
.++|+..++++.+..|.++..+.....
T Consensus 108 ~~eAi~~~~~Al~~~p~~~~~~~~~~~ 134 (144)
T PRK15359 108 PGLAREAFQTAIKMSYADASWSEIRQN 134 (144)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 555555555555555555555544443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.7e-07 Score=71.35 Aligned_cols=156 Identities=12% Similarity=0.077 Sum_probs=103.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 038550 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA 307 (423)
Q Consensus 228 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 307 (423)
..+-..+...|+-+....+........ +-|.......+....+.|++..|...+++..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 344455556666666666666544331 2244445556666777777777777777776653 56777777777777777
Q ss_pred CChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 038550 308 GLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVREL 385 (423)
Q Consensus 308 ~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 385 (423)
|+++.|..-|.+. .+.| ++...+.+.-.+.-.||.+.|..++.......+.+..+-..++......|++++|..+...
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 7777777766665 4444 4556677777777777777777777777777777777777777777777777777766544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.3e-06 Score=76.24 Aligned_cols=111 Identities=17% Similarity=0.207 Sum_probs=61.4
Q ss_pred HHHHHhcCCHHHHHHHhccCCCCChh--hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH
Q 038550 200 LDFYTRSGRIDLANKIFDCLPVKDSA--SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277 (423)
Q Consensus 200 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 277 (423)
+.+-.....|.+|+.+++.+...+.. -|..+...|+..|+++.|.++|.+.- .++-.|..|.+.|+++.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 34445556677777777766644332 35556666777777777777665421 23444566677777776
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC
Q 038550 278 GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321 (423)
Q Consensus 278 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 321 (423)
|.++-.+.. |...+...|..-..-+-+.|++.+|++++-.++
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~ 851 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG 851 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc
Confidence 666554432 223334444444444445555555555554443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.4e-06 Score=70.39 Aligned_cols=227 Identities=9% Similarity=0.027 Sum_probs=121.8
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHhcCCCCch-hhHHHHHHHHHhHh-hHHhhhHHHHHHHHhccCcchHHHHHHHHHH
Q 038550 126 YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV-VSFMGAISACANLA-AIKQGKEIHGVTIRKHLHTHLFVANSILDFY 203 (423)
Q Consensus 126 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (423)
+..+-..+...+..++|+.+..++++. .|+. .+|+....++...| +++++...++.+.+.+++. ..+|+....++
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn-yqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN-YQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc-hHHhHHHHHHH
Confidence 333444555667778888888888764 3433 34444444444444 4566666666666554322 12222222222
Q ss_pred HhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 038550 204 TRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFD 283 (423)
Q Consensus 204 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 283 (423)
.+.|+. ..++++.+++++.+...+ +..+|+....++...|+++++++.++
T Consensus 117 ~~l~~~-----------------------------~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 117 EKLGPD-----------------------------AANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHcCch-----------------------------hhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 222221 113445555555554322 45555555555555666666666666
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhc---CC----hHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhc----CChhHHHHHHH
Q 038550 284 EMQADSVKPTEMHYACMVDLLGRA---GL----MEDAVKLIKNL-PVEP-DANIWGALLGACRIY----GNVELGAWAAE 350 (423)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~~~~~~---~~----~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~----~~~~~a~~~~~ 350 (423)
++++.+ +-|...|+.....+.+. |. .++.+++..++ ...| |...|+.+...+... ++..+|...+.
T Consensus 167 ~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~ 245 (320)
T PLN02789 167 QLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCL 245 (320)
T ss_pred HHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHH
Confidence 666554 23344444443333332 11 13444444333 4445 555666666665552 34456777777
Q ss_pred HHHhcCCCCcchHHHHHHHHHhcC------------------ChhHHHHHHHHH
Q 038550 351 HLFMLKPQHCGYYILLSNMYAEAG------------------KWDEASKVRELM 386 (423)
Q Consensus 351 ~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m 386 (423)
++...+|.++.+...|+..|+... ..++|..+++.+
T Consensus 246 ~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 246 EVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred HhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 777777877778888888887632 336688888877
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.8e-05 Score=75.36 Aligned_cols=320 Identities=11% Similarity=0.052 Sum_probs=207.4
Q ss_pred cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCC--CCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCch-----
Q 038550 21 KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF--PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDL----- 93 (423)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----- 93 (423)
.|+..-+..+.++...+-+.+-+++++++.-.+.. -+...-+.++-...+ -+...+.+..+++-..+ .|+.
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~~ia~iai 1059 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-APDIAEIAI 1059 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-chhHHHHHh
Confidence 46666777788888888888888888887644211 111222333333322 23444555555544332 1211
Q ss_pred --HHHHHHHHHHHhcCChHHHHHHh-c-h-----------hcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCch
Q 038550 94 --FLTNALTDMYAKCGCLNLAQNVF-N-I-----------SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158 (423)
Q Consensus 94 --~~~~~l~~~~~~~g~~~~a~~~~-~-~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 158 (423)
..|.-....|-+......|.+++ + . .-..+..|..+..+-.+.|.+.+|++-|-+. -|+
T Consensus 1060 ~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDp 1133 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDP 1133 (1666)
T ss_pred hhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCc
Confidence 11222222222333333333333 0 0 0124567899999999999998888776432 356
Q ss_pred hhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccC
Q 038550 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLG 238 (423)
Q Consensus 159 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 238 (423)
..|..++....+.|.+++-.+++...++..-.|... +.|+-+|.+.+++.+-++++. .||.........-|...|
T Consensus 1134 s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~ 1208 (1666)
T KOG0985|consen 1134 SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEK 1208 (1666)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhh
Confidence 789999999999999999999999988887777665 568899999999988777653 466667777777788888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHh
Q 038550 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318 (423)
Q Consensus 239 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (423)
.++.|.-+|. +...|..+...+...|++..|...-++. .+..+|..+..+|...+.+.-|.
T Consensus 1209 ~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ---- 1269 (1666)
T KOG0985|consen 1209 MYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ---- 1269 (1666)
T ss_pred hhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH----
Confidence 8888876665 3445777777788888887777654443 34567777777777666554332
Q ss_pred hCC--CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038550 319 NLP--VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAE 372 (423)
Q Consensus 319 ~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 372 (423)
-.| +-....-..-|+..|-..|-+++.+.+++....+...+...|..|+-.|.+
T Consensus 1270 iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1270 ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 113 223455566777888888888888888888877777666677766655544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.3e-06 Score=76.84 Aligned_cols=166 Identities=16% Similarity=0.204 Sum_probs=83.2
Q ss_pred HHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHH
Q 038550 166 SACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAIN 245 (423)
Q Consensus 166 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 245 (423)
.+......|.+|..+++.+...... ..-|..+.+-|...|+++.|.++|.+.. .++-.|..|.+.|+|++|.+
T Consensus 740 eaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHH
Confidence 3444555666666666666554332 2234455666666777777776665432 34455666667777777666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCC
Q 038550 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPD 325 (423)
Q Consensus 246 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 325 (423)
+-.+... .......|..-..-+-+.|++.+|+++|-.+ | .|+. -|.+|-+.|..+..+++..+-.-..-
T Consensus 813 la~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l 881 (1636)
T KOG3616|consen 813 LAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHL 881 (1636)
T ss_pred HHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-CchH-----HHHHHHhhCcchHHHHHHHHhChhhh
Confidence 6554432 2223334444444455566666665554222 1 2322 24455555555555555554411122
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHH
Q 038550 326 ANIWGALLGACRIYGNVELGAWAA 349 (423)
Q Consensus 326 ~~~~~~l~~~~~~~~~~~~a~~~~ 349 (423)
..|...+..-+-..|+...|+.-|
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHH
Confidence 233334444444444444444333
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-06 Score=85.79 Aligned_cols=198 Identities=15% Similarity=0.162 Sum_probs=105.4
Q ss_pred hhhHHHHHHHHHhHhhHHhhhHHHHHHHHh-ccC---cchHHHHHHHHHHHhcCCHHHHHHHhccCCCC-C-hhhHHHHH
Q 038550 158 VVSFMGAISACANLAAIKQGKEIHGVTIRK-HLH---THLFVANSILDFYTRSGRIDLANKIFDCLPVK-D-SASWNTLI 231 (423)
Q Consensus 158 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~li 231 (423)
...|...|......+++++|.++.++++.. ++. --...|.++++.-..-|.-+...++|++..+- | ...|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 344555555556666666666666665542 111 11233444455444455555556666655432 2 23455566
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCh
Q 038550 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK-PTEMHYACMVDLLGRAGLM 310 (423)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 310 (423)
..|.+.+.+++|.++++.|.++ +.-....|...+..+.++++.+.|..++.++.+.-.+ -........+..-.+.|+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 6666666666666666666554 2234455666666666666666666666666554111 0122333334444556666
Q ss_pred HHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 038550 311 EDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLK 356 (423)
Q Consensus 311 ~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 356 (423)
+++..+|+.. .-.| -...|+.+++.-.++|+.+.+..+|+++..+.
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 6666666554 1122 34456666666666666666666666665554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-07 Score=71.42 Aligned_cols=108 Identities=14% Similarity=0.001 Sum_probs=92.9
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 038550 279 KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLK 356 (423)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 356 (423)
+.++++..+. .|+. +..+...+...|++++|...|+.. ...| +...|..+..++...|++++|+..|+++.+.+
T Consensus 13 ~~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 13 EDILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3456666653 4543 445677889999999999999987 5566 77789999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 357 PQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 357 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
|.++.++..++.++...|++++|+..+++..+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999997744
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.5e-06 Score=77.49 Aligned_cols=254 Identities=12% Similarity=0.088 Sum_probs=153.1
Q ss_pred HHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhh
Q 038550 103 YAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK 178 (423)
Q Consensus 103 ~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 178 (423)
+.+.|++.+|.-.| ...+.+..+|-.|.......++-..|+..+++.++.. +-+......|.-.|...|.-..|.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 34555566665555 2233455566666666666666666666666665532 234445555555556666555555
Q ss_pred HHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH-HHcCCCC
Q 038550 179 EIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM-REDGVGY 257 (423)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~~~~p 257 (423)
..++.-+...++-- + +. ...++...-+. ..+..........++|-++ .+.+..+
T Consensus 374 ~~L~~Wi~~~p~y~---~--l~------------------~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~ 428 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYV---H--LV------------------SAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKI 428 (579)
T ss_pred HHHHHHHHhCccch---h--cc------------------ccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCC
Confidence 55555443321100 0 00 00000000000 1111222333444455444 3444456
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC-HhHHHHHHHH
Q 038550 258 DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD-ANIWGALLGA 335 (423)
Q Consensus 258 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~~~l~~~ 335 (423)
|+..+..|.-.|.-.|++++|...|+.++... |-|..+||.|.-.++...+.++|+..|.+. .+.|. +.+.-.|.-.
T Consensus 429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS 507 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGIS 507 (579)
T ss_pred ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhh
Confidence 77788888778888899999999999888753 456778999998888888999999998887 67775 3466667778
Q ss_pred HHhcCChhHHHHHHHHHHhcCCC----------CcchHHHHHHHHHhcCChhHHHHHH
Q 038550 336 CRIYGNVELGAWAAEHLFMLKPQ----------HCGYYILLSNMYAEAGKWDEASKVR 383 (423)
Q Consensus 336 ~~~~~~~~~a~~~~~~~~~~~p~----------~~~~~~~l~~~~~~~g~~~~A~~~~ 383 (423)
|...|.+++|...|-.++.+.+. +..+|..|-.++.-.++.|-+.++.
T Consensus 508 ~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 508 CMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred hhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 88999999999888888776533 1246777666677777776555443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.3e-06 Score=68.97 Aligned_cols=155 Identities=7% Similarity=0.028 Sum_probs=118.4
Q ss_pred HHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHH
Q 038550 200 LDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279 (423)
Q Consensus 200 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 279 (423)
+..|...|+++.+....+.+..+. ..+...++.+++...++...+.. +.+...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456778888877655543332221 11223667788888888877764 347889999999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHH-HhcCC--hHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 280 KYFDEMQADSVKPTEMHYACMVDLL-GRAGL--MEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
..|++..+.. +.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|+..|+++.+
T Consensus 94 ~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 94 LAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999874 45677788887764 67777 59999999988 5566 677888888899999999999999999999
Q ss_pred cCCCCcchHH
Q 038550 355 LKPQHCGYYI 364 (423)
Q Consensus 355 ~~p~~~~~~~ 364 (423)
..|++..-+.
T Consensus 173 l~~~~~~r~~ 182 (198)
T PRK10370 173 LNSPRVNRTQ 182 (198)
T ss_pred hCCCCccHHH
Confidence 9987665443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.73 E-value=2e-08 Score=54.67 Aligned_cols=32 Identities=22% Similarity=0.513 Sum_probs=20.5
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHhhC
Q 038550 289 SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 289 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (423)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666655
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.2e-06 Score=81.89 Aligned_cols=140 Identities=9% Similarity=0.000 Sum_probs=84.8
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038550 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD-PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301 (423)
Q Consensus 223 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 301 (423)
++..+..|.....+.|.+++|..+++...+. .|+ ......+..++.+.+++++|...+++..... +-+......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 4556666666666666677777766666664 343 3455555666666666777666666666643 33445555556
Q ss_pred HHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHH
Q 038550 302 DLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL 365 (423)
Q Consensus 302 ~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 365 (423)
.++.+.|++++|..+|+++ ...| +..++..+...+...|+.++|...|+++.+...+....|+.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 6666666777777666666 2233 35566666666666667777776666666655444444433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3e-06 Score=77.71 Aligned_cols=191 Identities=18% Similarity=0.163 Sum_probs=119.6
Q ss_pred CcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038550 190 HTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269 (423)
Q Consensus 190 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 269 (423)
+|-...-..+...+.+.|-...|..+|+++ ..|...|.+|+..|+..+|..+..+-.++ +|++..|..+....
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 444445556777788888888888888754 46777788888888888888888777763 56777777777666
Q ss_pred hccCcHHHHHHHHHHHHH----------------------------cCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-
Q 038550 270 SHGGLVEKGKKYFDEMQA----------------------------DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL- 320 (423)
Q Consensus 270 ~~~~~~~~a~~~~~~~~~----------------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~- 320 (423)
-..--+++|+++.+.... .. +.-..+|-.+..+..+.++++.|.+.|...
T Consensus 468 ~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred cChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 555555566555554332 21 112233434444444555666666655544
Q ss_pred CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 321 PVEPD-ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 321 ~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
...|| ...||.+-.+|.+.|+-.+|...+.++.+-+-.+..+|........+.|.+++|.+.+.++.+
T Consensus 547 tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 547 TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 34553 345666666666666666666666666666655566666655556666666666666666654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.3e-06 Score=77.41 Aligned_cols=242 Identities=13% Similarity=0.050 Sum_probs=154.9
Q ss_pred HHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCH
Q 038550 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI 209 (423)
Q Consensus 130 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 209 (423)
...+.+.|-...|+.++++.. .+..++.+|+..|+..+|..+..+..+ -+|+...|..+.+.....--+
T Consensus 405 aell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 405 AELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHH
Confidence 444444455555555554432 334445555555555555555554444 345555555555555555555
Q ss_pred HHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038550 210 DLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS 289 (423)
Q Consensus 210 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 289 (423)
++|.++++..... +-..+.....+.+++.++.+.|+.-.+.. +....+|-.+..+..+.+++..|.+.|.......
T Consensus 474 EkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~ 549 (777)
T KOG1128|consen 474 EKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE 549 (777)
T ss_pred HHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence 5565555543322 11111222234677888888887765542 2255678888888889999999999999988753
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CC-CCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCcchHHH
Q 038550 290 VKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PV-EPDANIWGALLGACRIYGNVELGAWAAEHLFMLK--PQHCGYYIL 365 (423)
Q Consensus 290 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~ 365 (423)
+-+...||.+-.+|.+.++-.+|...+++. +. .-+..+|...+....+.|.+++|++.+.++..+. ..++.+...
T Consensus 550 -Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~ 628 (777)
T KOG1128|consen 550 -PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLI 628 (777)
T ss_pred -CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHH
Confidence 445788999999999999999999999988 32 3355678888888899999999999999998754 335566665
Q ss_pred HHHHHHhcCC---hhHHHHHHHHHH
Q 038550 366 LSNMYAEAGK---WDEASKVRELMK 387 (423)
Q Consensus 366 l~~~~~~~g~---~~~A~~~~~~m~ 387 (423)
++....+.-. .+++.......+
T Consensus 629 iv~~~~~~~~d~s~de~~~~k~~~k 653 (777)
T KOG1128|consen 629 IVRTVLEGMTDESGDEATGLKGKLK 653 (777)
T ss_pred HHHHHHhhccccccchhhhhhHHHH
Confidence 5555443322 455555544443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.3e-08 Score=54.47 Aligned_cols=34 Identities=29% Similarity=0.528 Sum_probs=27.6
Q ss_pred cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 038550 253 DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ 286 (423)
Q Consensus 253 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 286 (423)
.|+.||..||+.+|.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888773
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3e-06 Score=80.26 Aligned_cols=161 Identities=12% Similarity=0.006 Sum_probs=116.8
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCC-CCchHHHHHHHH
Q 038550 23 IVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGL-NFDLFLTNALTD 101 (423)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~ 101 (423)
...|..|...|...-+...|.+.|+...+.+ .-+......+...+++..+++.|..+.-..-+... ..-...|..+.-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 4478888888888888889999999887754 23566788888999999999999988333222210 111223333455
Q ss_pred HHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhh-HHHHHHHHHhHhhHHh
Q 038550 102 MYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVS-FMGAISACANLAAIKQ 176 (423)
Q Consensus 102 ~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~ 176 (423)
.|.+.++...|...| +..+.|...|..+..+|...|.+..|+++|.+... +.|+... -.......+..|.+.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHhHHHHHHHHHHHHHhhhHHH
Confidence 577888888888888 56677889999999999999999999999998876 4565432 2223334467788999
Q ss_pred hhHHHHHHHH
Q 038550 177 GKEIHGVTIR 186 (423)
Q Consensus 177 a~~~~~~~~~ 186 (423)
+...+..+..
T Consensus 649 ald~l~~ii~ 658 (1238)
T KOG1127|consen 649 ALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHH
Confidence 8888877665
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.4e-05 Score=62.46 Aligned_cols=226 Identities=13% Similarity=0.057 Sum_probs=112.1
Q ss_pred chHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhh-hHHHHHHHHhccCcchHHHHHHHHH
Q 038550 124 VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG-KEIHGVTIRKHLHTHLFVANSILDF 202 (423)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (423)
..-.-+-++|...|++...+. +.+... .|....+..+.......++.+.- .++.+.+.......+......-...
T Consensus 42 e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i 117 (299)
T KOG3081|consen 42 ELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAII 117 (299)
T ss_pred HHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHH
Confidence 333344555655555443322 222211 33333333333333333333322 2334444443333333333333455
Q ss_pred HHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCcHHHH
Q 038550 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH----GGLVEKG 278 (423)
Q Consensus 203 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a 278 (423)
|+..|++++|++...... +......=+..+.+..+++-|...+++|.+- -+..|.+.|..++.+ .+.+..|
T Consensus 118 ~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdA 192 (299)
T KOG3081|consen 118 YMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDA 192 (299)
T ss_pred hhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhH
Confidence 667777777777766633 2222222234445566666777777776653 244555555555433 3456666
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC--CCCCCHhHHHHHHHHHHhcCCh-hHHHHHHHHHHhc
Q 038550 279 KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL--PVEPDANIWGALLGACRIYGNV-ELGAWAAEHLFML 355 (423)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 355 (423)
.-+|++|.++ .+|+..+.+....++...|++++|..+++.. +...++.+...++-.....|.. +-..+.+.+....
T Consensus 193 fyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 193 FYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 6666666654 4566666666666666666677776666665 2233455555555444444433 3334455555555
Q ss_pred CCCC
Q 038550 356 KPQH 359 (423)
Q Consensus 356 ~p~~ 359 (423)
.|.+
T Consensus 272 ~p~h 275 (299)
T KOG3081|consen 272 HPEH 275 (299)
T ss_pred CCcc
Confidence 5554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.8e-05 Score=77.87 Aligned_cols=231 Identities=10% Similarity=0.050 Sum_probs=141.2
Q ss_pred hhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCC--c---hhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcc
Q 038550 118 ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH--D---VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH 192 (423)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 192 (423)
..+.+...|-..|..+...++.++|.++.++.+.. +.+ . ...|.++++.-..-|.-+...++|+++.+.. ..
T Consensus 1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~ 1529 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DA 1529 (1710)
T ss_pred cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--ch
Confidence 33445556666666666666666666666666543 111 1 1234444444444455556666666666542 22
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 038550 193 LFVANSILDFYTRSGRIDLANKIFDCLPV---KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD---PVSYIAIL 266 (423)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll 266 (423)
..+|..|...|.+.+.+++|.++++.|.+ .....|...+..+.+.++-+.|..++.+..+. -|. .......+
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHH
Confidence 34556677777777777777777777653 34566777777777777777777777776654 222 22334444
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC---CCCC--CHhHHHHHHHHHHhcCC
Q 038550 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL---PVEP--DANIWGALLGACRIYGN 341 (423)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~--~~~~~~~l~~~~~~~~~ 341 (423)
..-.+.|+.+++..+|+...... |--...|+..++.=.+.|+.+.+..+|++. ++.| --..|...+..--..|+
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 55566777778777887777652 445567777777777778888888887776 3333 23456666666566676
Q ss_pred hhHHHHHHHHHHh
Q 038550 342 VELGAWAAEHLFM 354 (423)
Q Consensus 342 ~~~a~~~~~~~~~ 354 (423)
-+.++.+=.++.+
T Consensus 1687 e~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1687 EKNVEYVKARAKE 1699 (1710)
T ss_pred hhhHHHHHHHHHH
Confidence 6655555444433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.7e-06 Score=78.46 Aligned_cols=227 Identities=11% Similarity=0.106 Sum_probs=120.8
Q ss_pred CcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchh-hHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHH
Q 038550 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV-SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSIL 200 (423)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 200 (423)
+...+..|+..+...+++++|.++.+...+. .|+.. .|..+...+.+.++...+..+ . ++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------------LI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------hh
Confidence 4445666666666666666666666655543 34332 222222233444443333332 1 11
Q ss_pred HHHHhcCCHHHHHHHhccCC--CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHH
Q 038550 201 DFYTRSGRIDLANKIFDCLP--VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKG 278 (423)
Q Consensus 201 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 278 (423)
..+....++..+..+...|. ..+..++..+..+|-+.|+.+++..+|+++.+.. +-|+.+.|.+...|... ++++|
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 11222222222222222221 1123355556666666666667777776666654 22556666666666666 66666
Q ss_pred HHHHHHHHHcCCCCChhhHHHHH---HHHH--hcCChHHHHHHHhhC----CCCCCHhHHHHHHHHHHhcCChhHHHHHH
Q 038550 279 KKYFDEMQADSVKPTEMHYACMV---DLLG--RAGLMEDAVKLIKNL----PVEPDANIWGALLGACRIYGNVELGAWAA 349 (423)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~---~~~~--~~~~~~~a~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 349 (423)
.+++.+....-+ +..-|+.+. .-++ ...+.+.-.++.+++ +..--+.++..+-..|...++++++..++
T Consensus 169 ~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 169 ITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred HHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 666666655411 000111111 1111 122333333333333 23334556666778888999999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHH
Q 038550 350 EHLFMLKPQHCGYYILLSNMYA 371 (423)
Q Consensus 350 ~~~~~~~p~~~~~~~~l~~~~~ 371 (423)
+.+.+.+|.|..+..-++.+|.
T Consensus 247 K~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 247 KKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhcCCcchhhHHHHHHHHH
Confidence 9999999999988888888776
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.0001 Score=70.45 Aligned_cols=202 Identities=12% Similarity=0.111 Sum_probs=145.9
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHh-chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 038550 92 DLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN 170 (423)
Q Consensus 92 ~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 170 (423)
.+.+|..+..+-.+.|.+.+|++.| +. .|+..|...+....+.|.|++-.+.+...++..-.|... +.++-+|++
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAk 1178 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAK 1178 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHH
Confidence 4678899999999999999999998 33 356689999999999999999999998888776666554 468889999
Q ss_pred HhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 038550 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAM 250 (423)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 250 (423)
.+++.+.+..+. -|+......+.+-|...+.++.|.-+|. ++.-|..|...+...|++..|...-++.
T Consensus 1179 t~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1179 TNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999888776652 3666666778888888888988888887 4556777777888888888777655443
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC
Q 038550 251 REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 251 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (423)
- +..||-.+-.+|...+.+..| +|...++-....-...|+..|-..|-+++.+.+++..
T Consensus 1247 n------s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1247 N------STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred c------chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 2 456777777777766555433 2222222233344555666666777777766666544
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00066 Score=64.36 Aligned_cols=383 Identities=13% Similarity=0.081 Sum_probs=212.4
Q ss_pred ccCCcchhHHhhcccCC--cChhhHHHHHHH--HHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHH
Q 038550 4 KSSRPAEASYLFHNIAE--KNIVSWNAMVAN--FAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKE 79 (423)
Q Consensus 4 ~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 79 (423)
..+++..|.+..+.+.+ ||.. |...+.+ +.+.|+.++|..+++.....+.. |..|...+-.+|...+..+++..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 35677778777777655 4433 3444444 56789999999999887665443 77788888889999999999999
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhcCChHH----HHHHhchhcCCcchHHHHHHHHhcC-CC---------hhhHHHH
Q 038550 80 IHARIIRKGLNFDLFLTNALTDMYAKCGCLNL----AQNVFNISFRDEVSYNILIVGYSQT-SD---------CSESLSL 145 (423)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~l~~~~~~~-~~---------~~~a~~~ 145 (423)
+|++.... .|+......+..+|.+.+.+.+ |.+++...+.+...+=.+++...+. .. ..-|.+.
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 99999866 5667777778888888877654 5566655555555443344443332 11 2234555
Q ss_pred HHHHHhcC-CCCchhhHHHHHHHHHhHhhHHhhhHHHH-HHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCC
Q 038550 146 FSEMRLLG-MKHDVVSFMGAISACANLAAIKQGKEIHG-VTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD 223 (423)
Q Consensus 146 ~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 223 (423)
++.+.+.+ -.-+..-...-+..+...|++++|..++. ...+.-..-+...-+..+..+...++|++..++-.++...+
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 66665544 11122222333444556778888888883 33333344444454566777777777777666555444221
Q ss_pred hhhHHHHHHHHh----------------ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---hccCcHHHHHHH---
Q 038550 224 SASWNTLILGYG----------------MLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC---SHGGLVEKGKKY--- 281 (423)
Q Consensus 224 ~~~~~~li~~~~----------------~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~~~~a~~~--- 281 (423)
..-|...++.+. ..+..+...+..++......+ ..|-+-+.+. -.-|+.+++...
T Consensus 257 ~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~R---gp~LA~lel~kr~~~~gd~ee~~~~y~~ 333 (932)
T KOG2053|consen 257 NDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSR---GPYLARLELDKRYKLIGDSEEMLSYYFK 333 (932)
T ss_pred CcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccccc---CcHHHHHHHHHHhcccCChHHHHHHHHH
Confidence 111222222111 112222222222222221111 0111111111 122333332221
Q ss_pred ---------------------------HHHHHHcCCCCChh-------hHHHHHHHHHhcCC-----hHHHHHHHhhC--
Q 038550 282 ---------------------------FDEMQADSVKPTEM-------HYACMVDLLGRAGL-----MEDAVKLIKNL-- 320 (423)
Q Consensus 282 ---------------------------~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~-----~~~a~~~~~~~-- 320 (423)
+...... .++.. -+...+....-.|. .+.-..++++.
T Consensus 334 kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~ 411 (932)
T KOG2053|consen 334 KFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKL 411 (932)
T ss_pred HhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence 1111111 11111 01111111112221 11222222221
Q ss_pred ----C------CCCC---------HhHHHHHHHHHHhcCCh---hHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH
Q 038550 321 ----P------VEPD---------ANIWGALLGACRIYGNV---ELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDE 378 (423)
Q Consensus 321 ----~------~~~~---------~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 378 (423)
| .-|. .-+.+.|+..+.+.++. -+|+-+++......|.|..+-..+++.|+-.|-+..
T Consensus 412 ~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~ 491 (932)
T KOG2053|consen 412 TYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPD 491 (932)
T ss_pred HHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChh
Confidence 1 1122 12346677888888775 478888899999999999999999999999999999
Q ss_pred HHHHHHHHHhccccCCC
Q 038550 379 ASKVRELMKSREAKKNP 395 (423)
Q Consensus 379 A~~~~~~m~~~~~~~~~ 395 (423)
|.++|+.+--+.|..+.
T Consensus 492 a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 492 AYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHHHhcchHHhhhcc
Confidence 99999998777765443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.5e-06 Score=69.12 Aligned_cols=182 Identities=11% Similarity=0.002 Sum_probs=124.9
Q ss_pred CchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCc--chHHHHHHHHHHHhcCCHHHHHHHhccCCC--C-Chh---hH
Q 038550 156 HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT--HLFVANSILDFYTRSGRIDLANKIFDCLPV--K-DSA---SW 227 (423)
Q Consensus 156 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~---~~ 227 (423)
.....+..+...+...|+++.|...++.+....+.. ....+..+..++.+.|++++|...++.+.+ | +.. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 345677788888999999999999999998865432 124566788999999999999999998752 2 222 45
Q ss_pred HHHHHHHhcc--------CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHH
Q 038550 228 NTLILGYGML--------GEVDTAINLFEAMREDGVGYDP-VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298 (423)
Q Consensus 228 ~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 298 (423)
..+..++... |++++|.+.++.+... .|+. ..+..+... .. ... ... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~~------~~~--------~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LRN------RLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HHH------HHH--------HHHH
Confidence 5555566554 7889999999999876 3433 222222111 00 000 000 0112
Q ss_pred HHHHHHHhcCChHHHHHHHhhC-CC---CC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 038550 299 CMVDLLGRAGLMEDAVKLIKNL-PV---EP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357 (423)
Q Consensus 299 ~l~~~~~~~~~~~~a~~~~~~~-~~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 357 (423)
.+...|.+.|++++|...+++. .. .| ....+..+..++...|++++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4556788889999999888877 22 23 346788888899999999999998888776555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.7e-05 Score=64.10 Aligned_cols=242 Identities=11% Similarity=0.024 Sum_probs=152.3
Q ss_pred HHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHH
Q 038550 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDL 211 (423)
Q Consensus 132 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 211 (423)
-+.-.|.+..++.......... -+...-..+-++|...|.......-. .... .|.......+......-++.++
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI---~~~~-~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEI---KEGK-ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccccc---cccc-CChHHHHHHHHHHhhCcchhHH
Confidence 3444566666666555544321 23333334455555555544333221 1111 2333333333333333333332
Q ss_pred H-HHHhccCCCC----ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 038550 212 A-NKIFDCLPVK----DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ 286 (423)
Q Consensus 212 A-~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 286 (423)
- .++.+.+..+ +......-...|+..|++++|++..+... +......=...+.+..+.+-|.+.++.|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2233333322 22223333456889999999999988722 22233333445678889999999999998
Q ss_pred HcCCCCChhhHHHHHHHHHh----cCChHHHHHHHhhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 038550 287 ADSVKPTEMHYACMVDLLGR----AGLMEDAVKLIKNL--PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 287 ~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 360 (423)
+- .+..+.+.|..++.+ .+.+.+|.-+|++| +..|+..+.+-...++...|++++|..+++.+...++.++
T Consensus 165 ~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp 241 (299)
T KOG3081|consen 165 QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDP 241 (299)
T ss_pred cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCH
Confidence 74 355667767766653 45799999999999 4778999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 038550 361 GYYILLSNMYAEAGKWDEA-SKVRELMKS 388 (423)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 388 (423)
.+...++-+-...|.-.++ .+.+.+++.
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 9998888777777776554 455555554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.7e-06 Score=65.58 Aligned_cols=93 Identities=20% Similarity=0.253 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 038550 297 YACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAG 374 (423)
Q Consensus 297 ~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 374 (423)
...+...+...|++++|.+.|+.+ ...| +...+..+...+...|++++|...++++.+.+|.++..+..++.+|...|
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Confidence 334444455555555555555554 2222 34445555555555555555555555555555555555555555555555
Q ss_pred ChhHHHHHHHHHHhc
Q 038550 375 KWDEASKVRELMKSR 389 (423)
Q Consensus 375 ~~~~A~~~~~~m~~~ 389 (423)
++++|...+++..+.
T Consensus 100 ~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 100 EPESALKALDLAIEI 114 (135)
T ss_pred CHHHHHHHHHHHHHh
Confidence 555555555555443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.8e-05 Score=69.61 Aligned_cols=126 Identities=19% Similarity=0.167 Sum_probs=96.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC-HhHHHHHHHHHHh
Q 038550 261 SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD-ANIWGALLGACRI 338 (423)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~ 338 (423)
-|..-+ .+...|.++.|+..++.+... .+-|...+......+.+.++.++|.+.++++ ...|+ ...+-.+..++.+
T Consensus 309 ~YG~A~-~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~ 386 (484)
T COG4783 309 QYGRAL-QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHH-HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 344444 345668888888888888775 3456666666778888888999998888887 56676 5566777788888
Q ss_pred cCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 339 YGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 339 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
.|+..+|+..+......+|+++..|..|+.+|...|+..++.....++..
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 89998999988888888888888888888888888887777766655543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00067 Score=60.74 Aligned_cols=128 Identities=11% Similarity=0.059 Sum_probs=85.9
Q ss_pred cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHH
Q 038550 21 KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALT 100 (423)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 100 (423)
-|+.+|+.||+-+... ..+++.+.++++... .+-....|..-+..-....+++.++.+|.+.+..-+ +...|...+
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl 93 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYL 93 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHH
Confidence 3789999999987766 999999999999864 344567899999999999999999999999886633 455555555
Q ss_pred HHHHh-cCChHH-------HHHHh----chhcCCcchHHHHHHH---------HhcCCChhhHHHHHHHHHhc
Q 038550 101 DMYAK-CGCLNL-------AQNVF----NISFRDEVSYNILIVG---------YSQTSDCSESLSLFSEMRLL 152 (423)
Q Consensus 101 ~~~~~-~g~~~~-------a~~~~----~~~~~~~~~~~~l~~~---------~~~~~~~~~a~~~~~~m~~~ 152 (423)
+--.+ .|+... |.++- .+...+...|+..+.. +....+++...++|+++...
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 43222 233322 22221 2223344456555443 33445667778888888753
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.9e-05 Score=73.93 Aligned_cols=364 Identities=13% Similarity=-0.000 Sum_probs=207.0
Q ss_pred CcchhHHhhcccCC---cChhhHHHHHHHHHhCCChHHHHHHHhhchhCC-CCCCchhHHHHHHHhhcCCCCccHHHHHH
Q 038550 7 RPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREMPIHN-EFPNSVTLTNVLPACARGHFLRPGKEIHA 82 (423)
Q Consensus 7 ~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 82 (423)
+...|.+.|+..-+ .+..++..+.+.|++..+++.|..+.-..-+.. ...-...|..+.-.+.+.++...+..-|+
T Consensus 507 Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQ 586 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQ 586 (1238)
T ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHH
Confidence 44567777776554 578889999999999999999999843332221 01112234444445778899999999999
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh---chhcCCc-chHHHHHHHHhcCCChhhHHHHHHHHHhcC-----
Q 038550 83 RIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF---NISFRDE-VSYNILIVGYSQTSDCSESLSLFSEMRLLG----- 153 (423)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~---~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----- 153 (423)
...+.. +.|...|..++.+|.++|++..|.++| ....|+. ..-......-+..|.+.++++.+.......
T Consensus 587 sALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~ 665 (1238)
T KOG1127|consen 587 SALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERT 665 (1238)
T ss_pred HHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 998876 668889999999999999999999999 2233322 222222344566899999999888775431
Q ss_pred -CCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHH-------hccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC--CCC
Q 038550 154 -MKHDVVSFMGAISACANLAAIKQGKEIHGVTIR-------KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP--VKD 223 (423)
Q Consensus 154 -~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~ 223 (423)
..--..++..+...+.-.|-...+..+++.-.+ .....+...|-.+ ..|..+|-... .|+
T Consensus 666 ~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----------sdac~~f~q~e~~~vn 735 (1238)
T KOG1127|consen 666 GQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----------SDACYIFSQEEPSIVN 735 (1238)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------hHHHHHHHHhcccchH
Confidence 111122333333334444444444444443322 2212222222111 12233333333 112
Q ss_pred hhhHHHHHHHHhccCCH---H---HHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--------cCcHHHHHHHHHHHHHcC
Q 038550 224 SASWNTLILGYGMLGEV---D---TAINLFEAMREDGVGYDPVSYIAILTACSH--------GGLVEKGKKYFDEMQADS 289 (423)
Q Consensus 224 ~~~~~~li~~~~~~g~~---~---~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~ 289 (423)
.....++..-.-..+.. + -+.+.+-.-.. ...+..+|..++..|.+ ..+...|...+.+.++..
T Consensus 736 ~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ 813 (1238)
T KOG1127|consen 736 MHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC 813 (1238)
T ss_pred HHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh
Confidence 21112221111112211 1 01111111011 11122333333333222 122345666676666642
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 038550 290 VKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367 (423)
Q Consensus 290 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 367 (423)
..+..+|+.|.-. ...|.+.-|...|-+- -..| ...+|..+.-.+....|++-|...+.+...+.|.+...|...+
T Consensus 814 -ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~A 891 (1238)
T KOG1127|consen 814 -ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEA 891 (1238)
T ss_pred -hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHH
Confidence 3455566655443 5556777777666544 2233 5667777777788888888888888888888888888887777
Q ss_pred HHHHhcCChhHHHHHHHH
Q 038550 368 NMYAEAGKWDEASKVREL 385 (423)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~ 385 (423)
......|+.-++..++..
T Consensus 892 li~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 892 LIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HhHHHHHHHHHHHHHHHh
Confidence 667777777777766655
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00026 Score=61.57 Aligned_cols=113 Identities=7% Similarity=-0.056 Sum_probs=52.9
Q ss_pred hcCChHHHHHHh----chhcCCcchHHHHHHHHhcCC-ChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhH--Hhh
Q 038550 105 KCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTS-DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI--KQG 177 (423)
Q Consensus 105 ~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~--~~a 177 (423)
..++.++|+.+. .+.+.+..+|+....++...| ++++++..++++.+.. +-+..+|+.....+.+.|+. +.+
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHH
Confidence 344555555555 233344445555555555555 4677777777777654 33334454443333333331 344
Q ss_pred hHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccC
Q 038550 178 KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL 219 (423)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 219 (423)
..+++.+.+... -+..+|+...-++...|+++++++.++++
T Consensus 128 l~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~ 168 (320)
T PLN02789 128 LEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQL 168 (320)
T ss_pred HHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 445544444332 22333333333333334444444444433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.1e-05 Score=73.36 Aligned_cols=143 Identities=12% Similarity=0.101 Sum_probs=116.4
Q ss_pred cCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038550 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI 265 (423)
Q Consensus 189 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 265 (423)
...+...+..|..+..+.|++++|..+++... +.+......+...+.+.+++++|+..+++....... +......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 44557778888999999999999999999876 335677888889999999999999999999987432 56677788
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC--CCCCCHhHHHHHH
Q 038550 266 LTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL--PVEPDANIWGALL 333 (423)
Q Consensus 266 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~ 333 (423)
..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++. ...|....|+.++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 888999999999999999999843 445788888999999999999999999987 3345555555544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.5e-06 Score=66.10 Aligned_cols=162 Identities=10% Similarity=-0.038 Sum_probs=129.1
Q ss_pred CchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHH
Q 038550 57 NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVG 132 (423)
Q Consensus 57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~ 132 (423)
|... ...-..+...|+-+....+....... .+.|......++....+.|++..|...| ...++|..+|+.+.-+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHH
Confidence 3344 56666777888888888887776533 2556677777899999999999999999 5567789999999999
Q ss_pred HhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHH
Q 038550 133 YSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLA 212 (423)
Q Consensus 133 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 212 (423)
|.+.|+++.|..-|.+..+.. +-+...++.+...+.-.|+.+.|..++......+.. +..+-..+..+....|+++.|
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHH
Confidence 999999999999999998853 345667888999999999999999999988876543 444556688888999999999
Q ss_pred HHHhccCCCC
Q 038550 213 NKIFDCLPVK 222 (423)
Q Consensus 213 ~~~~~~~~~~ 222 (423)
..+...-..+
T Consensus 222 ~~i~~~e~~~ 231 (257)
T COG5010 222 EDIAVQELLS 231 (257)
T ss_pred Hhhccccccc
Confidence 9998765543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00015 Score=70.62 Aligned_cols=167 Identities=8% Similarity=0.051 Sum_probs=110.6
Q ss_pred cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCch-hHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHH
Q 038550 21 KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV-TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNAL 99 (423)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 99 (423)
.+..+|..|+..+...+++++|.++.+...+. .|+.. .|-.+...+.+.++...+..+ .+... .+...-++.+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~~~~v 102 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLKWAIV 102 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccchhHH
Confidence 46778889999998999999999999866654 34443 444444466667776666555 33222 2222222222
Q ss_pred HHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhH
Q 038550 100 TDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179 (423)
Q Consensus 100 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 179 (423)
-..|...+++ ..+..++..+..+|-+.|+.++|.++|+++++.. +-|....+.+...+... ++++|.+
T Consensus 103 e~~~~~i~~~----------~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 103 EHICDKILLY----------GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred HHHHHHHHhh----------hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHH
Confidence 2222222221 2233467788899999999999999999999876 56777888888888888 9999998
Q ss_pred HHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC
Q 038550 180 IHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220 (423)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 220 (423)
++.+++.. |...+++..+.++|.++.
T Consensus 171 m~~KAV~~---------------~i~~kq~~~~~e~W~k~~ 196 (906)
T PRK14720 171 YLKKAIYR---------------FIKKKQYVGIEEIWSKLV 196 (906)
T ss_pred HHHHHHHH---------------HHhhhcchHHHHHHHHHH
Confidence 88776654 444556666666666554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.5e-06 Score=72.45 Aligned_cols=123 Identities=13% Similarity=0.136 Sum_probs=100.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHh
Q 038550 261 SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRI 338 (423)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~ 338 (423)
....|+..+...++++.|..+++++.+.. |+ ....+++.+...++-.+|.+++.+. ...| +...+......+.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 34455666667788888888888888764 44 3445777777788888888888776 3334 66677777788999
Q ss_pred cCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 038550 339 YGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387 (423)
Q Consensus 339 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 387 (423)
.++++.|+.+.+++.+..|.+..+|..|+.+|.+.|++++|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999886
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0001 Score=59.34 Aligned_cols=166 Identities=20% Similarity=0.196 Sum_probs=110.6
Q ss_pred HHHHHHHHhcCCHHHHHHHhccCCCCChhhHHH---HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 038550 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNT---LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273 (423)
Q Consensus 197 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 273 (423)
..+.-+....|+.+.|...++.+...-+.++.. -.--+-..|++++|+++++.+.+.+ +.|..++-.-+...-..|
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 344445555666666666666544211111111 1112345678888888888888775 335666666666666677
Q ss_pred cHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcC---ChhHHHHH
Q 038550 274 LVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYG---NVELGAWA 348 (423)
Q Consensus 274 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~---~~~~a~~~ 348 (423)
+.-+|++-+.+..+. +..|...|..+...|...|++++|.-.++++ -+.| ++..+..+...+.-.| +.+.|.+.
T Consensus 135 K~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arky 213 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKY 213 (289)
T ss_pred CcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 777888777777765 6778888888989999999999998888887 3455 6666677766654433 56788889
Q ss_pred HHHHHhcCCCCcchHH
Q 038550 349 AEHLFMLKPQHCGYYI 364 (423)
Q Consensus 349 ~~~~~~~~p~~~~~~~ 364 (423)
|.++.++.|.+...+.
T Consensus 214 y~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 214 YERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHhChHhHHHHH
Confidence 9999998886544433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-05 Score=60.44 Aligned_cols=115 Identities=11% Similarity=0.031 Sum_probs=86.2
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCC
Q 038550 246 LFEAMREDGVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVE 323 (423)
Q Consensus 246 ~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~ 323 (423)
.+++.... .| +......+...+...|++++|...++.+...+ +.+...+..+...+...|++++|...+++. ...
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444443 33 33455666677888888899988888887764 456777888888888888999998888877 444
Q ss_pred C-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchH
Q 038550 324 P-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYY 363 (423)
Q Consensus 324 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 363 (423)
| +...+..+...+...|++++|...++++.+..|++....
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 4 566777778888899999999999999999988876543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.5e-06 Score=61.85 Aligned_cols=93 Identities=13% Similarity=-0.000 Sum_probs=80.9
Q ss_pred HHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 038550 298 ACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGK 375 (423)
Q Consensus 298 ~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 375 (423)
-.+...+...|++++|..+|+-+ .+.| +..-|-.|.-++...|++++|+..|..+..++|+++..+..++.++...|+
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC
Confidence 34455667899999999999987 5566 666788888889999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcc
Q 038550 376 WDEASKVRELMKSRE 390 (423)
Q Consensus 376 ~~~A~~~~~~m~~~~ 390 (423)
.+.|++.|+.....-
T Consensus 119 ~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 119 VCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887653
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.1e-05 Score=69.64 Aligned_cols=129 Identities=15% Similarity=0.116 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 038550 194 FVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273 (423)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 273 (423)
.....|+..+...++++.|..+|+++.+.++.....+++.+...++-.+|.+++++..+.. +-+...+..-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3345667777778899999999999988777777788888888899999999999988653 236666666677789999
Q ss_pred cHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCC
Q 038550 274 LVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP 324 (423)
Q Consensus 274 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 324 (423)
+++.|..+.+++.... +-+..+|..|..+|...|+++.|+..++.++..+
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999999863 4456699999999999999999999999885443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.1e-05 Score=59.59 Aligned_cols=162 Identities=16% Similarity=0.184 Sum_probs=125.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038550 227 WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR 306 (423)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 306 (423)
|..++-+....|+.+.|...++.+...- +-+...-..-..-+...|.+++|.++++.+.+.+ +.|..++-.=+-..-.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 4445556667899999999999988763 2233332222233556789999999999999886 5667777766666677
Q ss_pred cCChHHHHHHHhhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC---ChhHHHH
Q 038550 307 AGLMEDAVKLIKNL--PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAG---KWDEASK 381 (423)
Q Consensus 307 ~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~ 381 (423)
.|+.-+|++-+.+. .+..|...|.-+...|...|+++.|...++++.=..|-++..+..+++.+.-.| +.+-|.+
T Consensus 133 ~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 78877888776665 456699999999999999999999999999999999999999999998876665 4556778
Q ss_pred HHHHHHhcc
Q 038550 382 VRELMKSRE 390 (423)
Q Consensus 382 ~~~~m~~~~ 390 (423)
+|.+..+..
T Consensus 213 yy~~alkl~ 221 (289)
T KOG3060|consen 213 YYERALKLN 221 (289)
T ss_pred HHHHHHHhC
Confidence 888776643
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00017 Score=63.70 Aligned_cols=138 Identities=17% Similarity=0.185 Sum_probs=107.9
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcC
Q 038550 231 ILGYGMLGEVDTAINLFEAMREDGVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT-EMHYACMVDLLGRAG 308 (423)
Q Consensus 231 i~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 308 (423)
...+...|++++|+..++.+... .| |+.........+.+.++.++|.+.++++... .|+ ....-.+..+|.+.|
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcC
Confidence 33455789999999999998876 44 4555566677899999999999999999986 455 556667789999999
Q ss_pred ChHHHHHHHhhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 309 LMEDAVKLIKNL--PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386 (423)
Q Consensus 309 ~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 386 (423)
++.+|+.++++. ...-|+..|..|.++|...|+..++..... +.|...|++++|+..+...
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------E~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA-----------------EGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----------------HHHHhCCCHHHHHHHHHHH
Confidence 999999999887 334488899999999999999988766544 4566667777777766666
Q ss_pred Hhc
Q 038550 387 KSR 389 (423)
Q Consensus 387 ~~~ 389 (423)
.+.
T Consensus 452 ~~~ 454 (484)
T COG4783 452 SQQ 454 (484)
T ss_pred HHh
Confidence 554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.31 E-value=9.7e-07 Score=48.84 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCc
Q 038550 24 VSWNAMVANFAQNRLELKALQLVREMPIHNEFPNS 58 (423)
Q Consensus 24 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 58 (423)
.+||.+|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36888888888888888888888888888888873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.30 E-value=3e-05 Score=59.40 Aligned_cols=83 Identities=16% Similarity=0.109 Sum_probs=39.0
Q ss_pred HHHHhcCChHHHHHHHhhC-CCCCCH----hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 038550 302 DLLGRAGLMEDAVKLIKNL-PVEPDA----NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKW 376 (423)
Q Consensus 302 ~~~~~~~~~~~a~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 376 (423)
..+...|++++|...|+.+ ...|+. .....|...+...|++++|+..++.. ...+..+..+...+.+|.+.|++
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~ 134 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDY 134 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCH
Confidence 4444455555555555544 111222 12223344455555555555555442 12223334455555566666666
Q ss_pred hHHHHHHHH
Q 038550 377 DEASKVREL 385 (423)
Q Consensus 377 ~~A~~~~~~ 385 (423)
++|+..|++
T Consensus 135 ~~A~~~y~~ 143 (145)
T PF09976_consen 135 DEARAAYQK 143 (145)
T ss_pred HHHHHHHHH
Confidence 666665554
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.5e-05 Score=56.87 Aligned_cols=125 Identities=14% Similarity=0.149 Sum_probs=89.2
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC--hhhHHHH
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYD---PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT--EMHYACM 300 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 300 (423)
.|..++..+ ..++...+...++.+...... + ....-.+...+...|++++|...|+.+......|+ ......|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 455555555 478888888888888876322 2 23344455678888999999999999888752232 2234456
Q ss_pred HHHHHhcCChHHHHHHHhhCCC-CCCHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 301 VDLLGRAGLMEDAVKLIKNLPV-EPDANIWGALLGACRIYGNVELGAWAAEHL 352 (423)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 352 (423)
...+...|++++|+..++.... ...+..+......+...|++++|...|+.+
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7788889999999999987632 234556667778899999999999998875
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.6e-06 Score=47.95 Aligned_cols=35 Identities=43% Similarity=0.649 Sum_probs=30.6
Q ss_pred chHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCch
Q 038550 124 VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158 (423)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 158 (423)
.+||.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36899999999999999999999999999988873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.5e-06 Score=47.73 Aligned_cols=33 Identities=30% Similarity=0.283 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHhhchhCCCCC
Q 038550 24 VSWNAMVANFAQNRLELKALQLVREMPIHNEFP 56 (423)
Q Consensus 24 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 56 (423)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 567888888888888888888888887777766
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.6e-06 Score=46.68 Aligned_cols=33 Identities=33% Similarity=0.547 Sum_probs=28.1
Q ss_pred chHHHHHHHHhcCCChhhHHHHHHHHHhcCCCC
Q 038550 124 VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH 156 (423)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 156 (423)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888876
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.5e-05 Score=56.81 Aligned_cols=97 Identities=11% Similarity=0.009 Sum_probs=41.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC----HhHHHHHHHHH
Q 038550 264 AILTACSHGGLVEKGKKYFDEMQADSV--KPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD----ANIWGALLGAC 336 (423)
Q Consensus 264 ~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~ 336 (423)
.+...+.+.|++++|...+..+..... +.....+..+..++.+.|+++.|...|+.+ ...|+ ...+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 334444444555555555555444310 001122333444444444444444444443 11121 22334444444
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCc
Q 038550 337 RIYGNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 337 ~~~~~~~~a~~~~~~~~~~~p~~~ 360 (423)
...|+.++|...++++.+..|+++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcCCh
Confidence 445555555555555555554443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.5e-06 Score=53.90 Aligned_cols=65 Identities=23% Similarity=0.205 Sum_probs=60.2
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC-ChhHHHHHHHHHHhc
Q 038550 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAG-KWDEASKVRELMKSR 389 (423)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 389 (423)
++.+|..+...+...|++++|+..|+++++.+|.++.++..++.+|...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46788889999999999999999999999999999999999999999999 799999999988764
|
... |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.6e-06 Score=58.32 Aligned_cols=77 Identities=25% Similarity=0.295 Sum_probs=42.5
Q ss_pred CChHHHHHHHhhC-CCCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 038550 308 GLMEDAVKLIKNL-PVEP---DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVR 383 (423)
Q Consensus 308 ~~~~~a~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 383 (423)
|+++.|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4555555555555 1122 333444455666666666666666666 4445555555555566666777777776666
Q ss_pred HH
Q 038550 384 EL 385 (423)
Q Consensus 384 ~~ 385 (423)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.6e-05 Score=56.70 Aligned_cols=97 Identities=20% Similarity=0.086 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---cchHHHH
Q 038550 295 MHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD----ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH---CGYYILL 366 (423)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 366 (423)
.++..+...+.+.|++++|.+.|+++ ...|+ ...+..+..++...|+++.|...++.+....|.+ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34566778889999999999999988 33343 3466678899999999999999999999988775 4568888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccc
Q 038550 367 SNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 367 ~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
+.++.+.|++++|...++++.+...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCc
Confidence 9999999999999999999988753
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.3e-05 Score=65.17 Aligned_cols=273 Identities=12% Similarity=0.025 Sum_probs=146.4
Q ss_pred HHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCC-chhhHHHHHHHHHhHhhHHh
Q 038550 102 MYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH-DVVSFMGAISACANLAAIKQ 176 (423)
Q Consensus 102 ~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~ 176 (423)
.+.+..++.+|+..+ ++.+.+...|..-+..+...++++++.--.++-... .| .+....-.-.++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHHHH
Confidence 344555555665555 445556666666667777777777776655544432 22 22244444444555555555
Q ss_pred hhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC-----CChhhHHHH-HHHHhccCCHHHHHHHHHHH
Q 038550 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-----KDSASWNTL-ILGYGMLGEVDTAINLFEAM 250 (423)
Q Consensus 177 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m 250 (423)
|.+.++.- ..+ ....|+..++.+.. |.-.+|..+ ..++...|++++|..+-...
T Consensus 136 A~~~~~~~---------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 136 AEEKLKSK---------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred HHHHhhhh---------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 55544410 000 01111112222211 112223222 23455566777776666555
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHH-------------HHHHHhcCChHHHHHHH
Q 038550 251 REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM-------------VDLLGRAGLMEDAVKLI 317 (423)
Q Consensus 251 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------------~~~~~~~~~~~~a~~~~ 317 (423)
++.... +....-.-..++...++.+.+...|++.+..+ |+...-... ..-..+.|.+.+|.+.|
T Consensus 196 lkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Y 272 (486)
T KOG0550|consen 196 LKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECY 272 (486)
T ss_pred Hhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHH
Confidence 543211 22221111223444566677777776666542 332211111 12235667788888877
Q ss_pred hhC-CCCC-----CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 318 KNL-PVEP-----DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 318 ~~~-~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
.+. ++.| +...|.....+..+.|+..+|+.--+++.+++|.-...+..-+.++...+.|++|.+-+++..+...
T Consensus 273 teal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 273 TEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 766 4444 4445555556667778888888888888888877777777777777788888888888877766554
Q ss_pred cCCCCCcc
Q 038550 392 KKNPGCSW 399 (423)
Q Consensus 392 ~~~~~~~~ 399 (423)
.+....+|
T Consensus 353 s~e~r~~l 360 (486)
T KOG0550|consen 353 DCEIRRTL 360 (486)
T ss_pred ccchHHHH
Confidence 44443333
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.9e-05 Score=54.32 Aligned_cols=93 Identities=22% Similarity=0.264 Sum_probs=69.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 038550 297 YACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAG 374 (423)
Q Consensus 297 ~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 374 (423)
+..+...+...|++++|...+++. ...| +...+..+...+...+++++|...++......|.+...+..++..+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445566667777888888777766 3344 33566667777778888888888888888888888778888888888888
Q ss_pred ChhHHHHHHHHHHhc
Q 038550 375 KWDEASKVRELMKSR 389 (423)
Q Consensus 375 ~~~~A~~~~~~m~~~ 389 (423)
++++|...+.+..+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 888888888776553
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.13 E-value=8.6e-06 Score=52.55 Aligned_cols=59 Identities=22% Similarity=0.226 Sum_probs=51.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 332 LLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 332 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
+...+...|++++|+..|+++.+..|.++.++..++.++...|++++|+.+++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45678899999999999999999999999999999999999999999999999987654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.3e-05 Score=52.46 Aligned_cols=80 Identities=11% Similarity=0.161 Sum_probs=67.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHHHHcCCCCChhhH
Q 038550 227 WNTLILGYGMLGEVDTAINLFEAMREDGV-GYDPVSYIAILTACSHGG--------LVEKGKKYFDEMQADSVKPTEMHY 297 (423)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 297 (423)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666777999999999999999999 899999999999876642 455678899999999999999999
Q ss_pred HHHHHHHHh
Q 038550 298 ACMVDLLGR 306 (423)
Q Consensus 298 ~~l~~~~~~ 306 (423)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.10 E-value=9.6e-05 Score=61.44 Aligned_cols=110 Identities=15% Similarity=0.106 Sum_probs=90.4
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhc---CChhHHHHHHHHHHhcCCCCcchHHH
Q 038550 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIY---GNVELGAWAAEHLFMLKPQHCGYYIL 365 (423)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~~~ 365 (423)
+-|...|-.|...|...|+.+.|..-|.+. .+.| ++..+..+..++..+ ....++..+++++...+|.++.....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 667889999999999999999999999887 4444 566777777665433 34678999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhccccCCCCCccc
Q 038550 366 LSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWV 400 (423)
Q Consensus 366 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 400 (423)
|+..+...|++.+|...++.|.+....-++..+.+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 99999999999999999999998876555554444
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00012 Score=65.17 Aligned_cols=102 Identities=14% Similarity=0.052 Sum_probs=72.6
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhH
Q 038550 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVEL 344 (423)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~ 344 (423)
..+...|+++.|...|+++++.. +.+...|..+..+|...|++++|+..++++ .+.| +...|..+..+|...|++++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 34556677777777777777653 345566666777777777888777777776 4455 45567777777888888888
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHH
Q 038550 345 GAWAAEHLFMLKPQHCGYYILLSNM 369 (423)
Q Consensus 345 a~~~~~~~~~~~p~~~~~~~~l~~~ 369 (423)
|+..|+++.+++|.++.+...+..+
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 8888888888888877776665544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=6.4e-05 Score=66.85 Aligned_cols=90 Identities=17% Similarity=0.111 Sum_probs=80.7
Q ss_pred HHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH
Q 038550 301 VDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDE 378 (423)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 378 (423)
...+...|++++|++.|+++ ...| +...|..+..+|...|++++|+..++++++++|.++..|..++.+|...|++++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 45567889999999999988 5555 667888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 038550 379 ASKVRELMKSRE 390 (423)
Q Consensus 379 A~~~~~~m~~~~ 390 (423)
|+..|++..+.+
T Consensus 89 A~~~~~~al~l~ 100 (356)
T PLN03088 89 AKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHhC
Confidence 999999987654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00036 Score=59.87 Aligned_cols=134 Identities=16% Similarity=0.195 Sum_probs=100.7
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038550 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA-CSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL 303 (423)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 303 (423)
.+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467778888888888999999999998643 2234444444444 33357777899999999887 56778888889999
Q ss_pred HHhcCChHHHHHHHhhC-CCCCCH----hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 038550 304 LGRAGLMEDAVKLIKNL-PVEPDA----NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 304 ~~~~~~~~~a~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 360 (423)
+...++.+.|..+|++. ..-|.. ..|...+..-.+.|+.+....+.+++.+.-|.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999987 323333 4899999999999999999999999999887744
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.7e-05 Score=65.42 Aligned_cols=109 Identities=17% Similarity=0.142 Sum_probs=89.1
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC-HhHHHHHHHHHHhcCChhH
Q 038550 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD-ANIWGALLGACRIYGNVEL 344 (423)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~ 344 (423)
.-+.+.+++.+|+..|.++++.. +-|.+.|..-..+|.+.|.++.|++-.+.. .+.|. ...|..|..+|...|++++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34778899999999999999863 456777777889999999999999877766 67774 5689999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 038550 345 GAWAAEHLFMLKPQHCGYYILLSNMYAEAGKW 376 (423)
Q Consensus 345 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 376 (423)
|++.|+++++++|++......|-.+-.+.+..
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 99999999999999986666665544444433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0079 Score=55.87 Aligned_cols=195 Identities=8% Similarity=-0.064 Sum_probs=105.5
Q ss_pred cchhHHhhcccCCcChhhHHHHHHHHHhCCChHHHHHHHhhchhC-CCCCCchhHHH----H--HHHhhcCCCCccHHHH
Q 038550 8 PAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIH-NEFPNSVTLTN----V--LPACARGHFLRPGKEI 80 (423)
Q Consensus 8 ~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~----l--~~~~~~~~~~~~a~~~ 80 (423)
+++|.+..+.- |.+..|..|.......-.++-|...|-+...- |++.-...-+. + ...-+--|++++|.++
T Consensus 679 ledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~ 756 (1189)
T KOG2041|consen 679 LEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKL 756 (1189)
T ss_pred hHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhh
Confidence 34454444443 66688888888777777777777777665432 33211110000 0 1112235788888888
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHhchhcC------CcchHHHHHHHHhcCCChhhHHHHHHHHHh---
Q 038550 81 HARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR------DEVSYNILIVGYSQTSDCSESLSLFSEMRL--- 151 (423)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--- 151 (423)
|-+|-+++ ..+..+.+.|++-...++++.... -..+|+.+...+.....|+.|.+.|..-..
T Consensus 757 yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~ 827 (1189)
T KOG2041|consen 757 YLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTEN 827 (1189)
T ss_pred hhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHh
Confidence 87776553 345667777888888887733211 124566666666666666666666543211
Q ss_pred ------------------cCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHH
Q 038550 152 ------------------LGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213 (423)
Q Consensus 152 ------------------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 213 (423)
..++.+....-.+...+.+.|.-++|.+.+-+- +. | ...+..|...++|.+|.
T Consensus 828 ~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQW~~av 898 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQWGEAV 898 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHHHHHHH
Confidence 112334444444555555555555555443221 11 1 23444555566666666
Q ss_pred HHhccCCCC
Q 038550 214 KIFDCLPVK 222 (423)
Q Consensus 214 ~~~~~~~~~ 222 (423)
++-++..-|
T Consensus 899 elaq~~~l~ 907 (1189)
T KOG2041|consen 899 ELAQRFQLP 907 (1189)
T ss_pred HHHHhccch
Confidence 666555444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00012 Score=60.66 Aligned_cols=103 Identities=17% Similarity=0.082 Sum_probs=85.6
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 038550 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310 (423)
Q Consensus 231 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 310 (423)
..-+.+.+++.+|+..|.+.++... -|.+-|..-..+|++.|.++.|++-.+..+... +-...+|..|..+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcH
Confidence 3457788999999999999998632 267778888899999999999999998888753 33477899999999999999
Q ss_pred HHHHHHHhhC-CCCCCHhHHHHHHHH
Q 038550 311 EDAVKLIKNL-PVEPDANIWGALLGA 335 (423)
Q Consensus 311 ~~a~~~~~~~-~~~~~~~~~~~l~~~ 335 (423)
++|++.|++. .+.|+-.+|..=+..
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 9999999988 889987777655543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.9e-05 Score=51.47 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=47.0
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 337 RIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 337 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
...|++++|+..++++.+..|.+..++..++.+|.+.|++++|.++++++.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4678899999999999999999999999999999999999999999988876543
|
... |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00016 Score=50.45 Aligned_cols=91 Identities=18% Similarity=0.154 Sum_probs=42.2
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChh
Q 038550 266 LTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVE 343 (423)
Q Consensus 266 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~ 343 (423)
...+...|++++|...++.+.+.. +.+...+..+...+...+++++|.+.+++. ...| +..++..+...+...|+++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 333444445555555554444431 122233444444444455555555555443 2222 2234445555555555555
Q ss_pred HHHHHHHHHHhcCC
Q 038550 344 LGAWAAEHLFMLKP 357 (423)
Q Consensus 344 ~a~~~~~~~~~~~p 357 (423)
.|...++...+..|
T Consensus 86 ~a~~~~~~~~~~~~ 99 (100)
T cd00189 86 EALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHccCC
Confidence 55555555554443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.6e-05 Score=42.36 Aligned_cols=29 Identities=41% Similarity=0.897 Sum_probs=19.3
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDG 254 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 254 (423)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666655
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.7e-05 Score=42.25 Aligned_cols=31 Identities=45% Similarity=0.782 Sum_probs=24.1
Q ss_pred chHHHHHHHHhcCCChhhHHHHHHHHHhcCC
Q 038550 124 VSYNILIVGYSQTSDCSESLSLFSEMRLLGM 154 (423)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 154 (423)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888877663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00032 Score=49.04 Aligned_cols=78 Identities=12% Similarity=0.064 Sum_probs=66.0
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHhcCC-CCchhhHHHHHHHHHhHh--------hHHhhhHHHHHHHHhccCcchHHHHH
Q 038550 128 ILIVGYSQTSDCSESLSLFSEMRLLGM-KHDVVSFMGAISACANLA--------AIKQGKEIHGVTIRKHLHTHLFVANS 198 (423)
Q Consensus 128 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 198 (423)
..|..+...+++.....+|+.++..|+ .|+..+|+.++.+.+++. +.-....+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345566667999999999999999999 999999999999987652 45567788999999999999999999
Q ss_pred HHHHHHh
Q 038550 199 ILDFYTR 205 (423)
Q Consensus 199 l~~~~~~ 205 (423)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 9887754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.015 Score=51.42 Aligned_cols=111 Identities=15% Similarity=0.093 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHH----HHHHhc---CChH---HHHHHHhhCCCCC----CHhHHHHHHHH--HHh
Q 038550 275 VEKGKKYFDEMQADSVKPTEMHYACMV----DLLGRA---GLME---DAVKLIKNLPVEP----DANIWGALLGA--CRI 338 (423)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~---~~~~---~a~~~~~~~~~~~----~~~~~~~l~~~--~~~ 338 (423)
-++|..+++.+.+-. +-|..+-|.+. ..|..+ ..+. +-+.++++.|+.| +...-|.|..+ +..
T Consensus 396 dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 566777777776642 23333333322 223221 1222 2233445556665 44466667655 578
Q ss_pred cCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 038550 339 YGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387 (423)
Q Consensus 339 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 387 (423)
+|++.++.-.-.-+.+..| ++.+|..++-++...+++++|+.++.++.
T Consensus 475 qgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred cccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 9999999988888888888 79999999999999999999999998763
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.88 E-value=5.6e-05 Score=50.05 Aligned_cols=59 Identities=14% Similarity=0.072 Sum_probs=52.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 333 LGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 333 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
...|.+.+++++|..+++++...+|.++..+...+.++.+.|++++|.+.+++..+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35678899999999999999999999999999999999999999999999999887654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00023 Score=56.31 Aligned_cols=93 Identities=14% Similarity=0.079 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhC-CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038550 297 YACMVDLLGRAGLMEDAVKLIKNL-PVEPD----ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371 (423)
Q Consensus 297 ~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 371 (423)
+..+...+...|++++|...|++. ...|+ ...+..+...+...|++++|...++++.+..|.+...+..++.++.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 334444444455555555555444 11111 2345555566666666666666666666666666666666666666
Q ss_pred hcCC--------------hhHHHHHHHHHHhc
Q 038550 372 EAGK--------------WDEASKVRELMKSR 389 (423)
Q Consensus 372 ~~g~--------------~~~A~~~~~~m~~~ 389 (423)
..|+ +++|.+++++....
T Consensus 118 ~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 118 KRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred HcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 6555 45566666665543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0012 Score=61.62 Aligned_cols=66 Identities=20% Similarity=0.128 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 038550 295 MHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 360 (423)
..|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...++++..++|.++
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 33444433333344555555554444 3344444444444444555555555555555555544444
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.003 Score=54.41 Aligned_cols=167 Identities=14% Similarity=0.181 Sum_probs=86.5
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHhc----CCCCc-hhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHH
Q 038550 126 YNILIVGYSQTSDCSESLSLFSEMRLL----GMKHD-VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSIL 200 (423)
Q Consensus 126 ~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 200 (423)
|......|-..+++++|...|.+.... +-+.+ ...|......+ +..++++|...++ ..+
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~---------------~A~ 101 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYE---------------KAI 101 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHH---------------HHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHH---------------HHH
Confidence 344556666677777777776665331 11111 11222222222 2235555555444 344
Q ss_pred HHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhcc-CCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHhccC
Q 038550 201 DFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML-GEVDTAINLFEAMRED----GVGYD--PVSYIAILTACSHGG 273 (423)
Q Consensus 201 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~----~~~p~--~~~~~~ll~~~~~~~ 273 (423)
..|...|++..|-..+ ..+...|-.. |+++.|++.|++..+. + .+. ...+..+...+.+.|
T Consensus 102 ~~y~~~G~~~~aA~~~-----------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCL-----------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HHHHHCT-HHHHHHHH-----------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCcHHHHHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhC
Confidence 5566777776664443 4455666666 7788887777776442 2 111 234556666777788
Q ss_pred cHHHHHHHHHHHHHcCCCC-----Chh-hHHHHHHHHHhcCChHHHHHHHhhC
Q 038550 274 LVEKGKKYFDEMQADSVKP-----TEM-HYACMVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 274 ~~~~a~~~~~~~~~~~~~~-----~~~-~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (423)
++++|.++|++....-... +.. .+...+-++...||+..|.+.|++.
T Consensus 170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888776642211 111 2223344555677777777777765
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00025 Score=60.79 Aligned_cols=129 Identities=13% Similarity=0.125 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCChHHHHHHHhhC--CCCCCHhHHHHHHHHH
Q 038550 260 VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL-LGRAGLMEDAVKLIKNL--PVEPDANIWGALLGAC 336 (423)
Q Consensus 260 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~ 336 (423)
.+|..++...-+.+..+.|..+|.+..+.+ ..+..+|...... |...++.+.|..+|+.. .+..+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 468888888999999999999999998653 3344555554444 33356777799999987 3455788999999999
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 337 RIYGNVELGAWAAEHLFMLKPQHC---GYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 337 ~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
...++.+.|..+|+++...-|.+. .+|..++..-.+.|+.+.+..+.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999998766554 57888999889999999999999998775
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0045 Score=47.67 Aligned_cols=133 Identities=11% Similarity=0.024 Sum_probs=104.5
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC-CCC---CHhHHH
Q 038550 255 VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP-VEP---DANIWG 330 (423)
Q Consensus 255 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~---~~~~~~ 330 (423)
..|+...-..|..++...|+..+|...|++...--+.-|......+.++....+++..|...++++. ..| ++.+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 4677777778888999999999999999998876566788888888899999999999999988872 222 344555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 331 ALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 331 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
.+.+.+...|+...|+..|+.+..--|. +.........+.++|+.+++..-+..+.+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 6778899999999999999999887765 45555666778889988887765555544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.017 Score=50.35 Aligned_cols=78 Identities=19% Similarity=0.250 Sum_probs=36.7
Q ss_pred HHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 038550 201 DFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280 (423)
Q Consensus 201 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 280 (423)
.-+...|+...|.++-.+..-|+-..|-..+.+++..++|++-..+... +-++.-|..++.+|.+.|+..+|..
T Consensus 185 ~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~ 258 (319)
T PF04840_consen 185 RKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASK 258 (319)
T ss_pred HHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHH
Confidence 3344445555555555555555555555555555555555544433221 1122445555555555555555554
Q ss_pred HHHH
Q 038550 281 YFDE 284 (423)
Q Consensus 281 ~~~~ 284 (423)
+..+
T Consensus 259 yI~k 262 (319)
T PF04840_consen 259 YIPK 262 (319)
T ss_pred HHHh
Confidence 4443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00067 Score=53.65 Aligned_cols=118 Identities=9% Similarity=0.029 Sum_probs=78.7
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHH
Q 038550 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD--PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACM 300 (423)
Q Consensus 223 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 300 (423)
....+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++..+.. +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 445667777777788888888888888776533222 3567777777888888888888888877753 2345555566
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 038550 301 VDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359 (423)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 359 (423)
..++...|+...+..-++.. ...+++|.++++++.+.+|++
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh
Confidence 66666666655544332221 112577888888888888876
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0026 Score=54.87 Aligned_cols=107 Identities=14% Similarity=0.158 Sum_probs=64.0
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHc--CCCCC--hh
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVG-----YDPV-SYIAILTACSHGGLVEKGKKYFDEMQAD--SVKPT--EM 295 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~--~~ 295 (423)
.+..+...+.+.|++++|.++|++....... .+.. .|...+-++...|++..|...+++.... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 4556677788899999999999988764322 1222 2333444666778999999999998765 33333 34
Q ss_pred hHHHHHHHHHh--cCChHHHHHHHhhCCCCCCHhHHHHHH
Q 038550 296 HYACMVDLLGR--AGLMEDAVKLIKNLPVEPDANIWGALL 333 (423)
Q Consensus 296 ~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~l~ 333 (423)
....|+.++-. ...++.+..-|+.+. +.|...-..|+
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w~~~~l~ 275 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNWKTKMLL 275 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS----HHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHHHHHHHH
Confidence 45566666643 334666777777764 44554444443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.82 E-value=5.8e-05 Score=51.56 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 038550 238 GEVDTAINLFEAMREDGVG-YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316 (423)
Q Consensus 238 g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 316 (423)
|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++. ...+. .+....-.+..+|.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555555555555554221 1223333345555555555555555555 21111 1122222334555555555555555
Q ss_pred Hh
Q 038550 317 IK 318 (423)
Q Consensus 317 ~~ 318 (423)
|+
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0003 Score=55.43 Aligned_cols=93 Identities=12% Similarity=-0.079 Sum_probs=68.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHH
Q 038550 294 EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD----ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN 368 (423)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 368 (423)
...|..+...+...|++++|+..|++. .+.|+ ..++..+...+...|++++|+..++++....|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566666677778888888887776 23332 3467778888888999999999999999888888887777777
Q ss_pred HHH-------hcCChhHHHHHHHHH
Q 038550 369 MYA-------EAGKWDEASKVRELM 386 (423)
Q Consensus 369 ~~~-------~~g~~~~A~~~~~~m 386 (423)
.+. ..|++++|+..+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 777 778887666655543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.80 E-value=8.3e-05 Score=47.86 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=46.1
Q ss_pred HHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 038550 300 MVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 300 l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 360 (423)
+...+...|++++|...|+++ ...| +...+..+..++...|++++|...++++.+..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 345677888888888888877 4456 556777778888888888888888888888888764
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.001 Score=61.96 Aligned_cols=136 Identities=13% Similarity=0.081 Sum_probs=98.3
Q ss_pred CCCCCHHHHHHHHHHHhc--c---CcHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhc--------CChHHHHHHHhh
Q 038550 254 GVGYDPVSYIAILTACSH--G---GLVEKGKKYFDEMQADSVKPT-EMHYACMVDLLGRA--------GLMEDAVKLIKN 319 (423)
Q Consensus 254 ~~~p~~~~~~~ll~~~~~--~---~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~ 319 (423)
+.+.+...|..++.+... . +....|..+|++..+. .|+ ...|..+..++... ++...+.+..++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 345677888888887433 2 3477899999999986 454 44555544444321 123344454444
Q ss_pred C----CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcccc
Q 038550 320 L----PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAK 392 (423)
Q Consensus 320 ~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 392 (423)
. ....++..+..+.-.....|++++|...++++.+++| +...|..++..+...|+.++|.+.+++....+..
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3 1233567788777677778999999999999999999 5788999999999999999999999998776543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0011 Score=59.30 Aligned_cols=120 Identities=11% Similarity=0.044 Sum_probs=90.2
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCChHHHHHHHhhC---CCCCCHhH
Q 038550 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD--SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL---PVEPDANI 328 (423)
Q Consensus 254 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~ 328 (423)
+.+.+......+++.+....+.+.+..++.+.... ....-..|..++++.|.+.|..++++.+++.= |+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34557777888888888888888888888888776 22233455668889999999999999888753 88899999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCcchHHHHHHHHHhc
Q 038550 329 WGALLGACRIYGNVELGAWAAEHLFMLK-PQHCGYYILLSNMYAEA 373 (423)
Q Consensus 329 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 373 (423)
++.|+..+.+.|++..|.++...+...+ ..++.++..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999888888776644 55566655554444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00034 Score=55.37 Aligned_cols=89 Identities=22% Similarity=0.319 Sum_probs=69.9
Q ss_pred CCChhhHHHHHHHHhc-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----------------CcHHHHH
Q 038550 221 VKDSASWNTLILGYGM-----LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG----------------GLVEKGK 279 (423)
Q Consensus 221 ~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----------------~~~~~a~ 279 (423)
..+-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||..+-+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4566777777777764 477888888899999999999999999999988763 2345677
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038550 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGL 309 (423)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 309 (423)
+++++|...|+-||..++..|++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 888888888888888888888888876654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.012 Score=49.24 Aligned_cols=61 Identities=11% Similarity=-0.052 Sum_probs=34.8
Q ss_pred HHHHHhcCCChhhHHHHHHHHHhcCCCCch-hhH---HHHHHHHHhHhhHHhhhHHHHHHHHhccCc
Q 038550 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDV-VSF---MGAISACANLAAIKQGKEIHGVTIRKHLHT 191 (423)
Q Consensus 129 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 191 (423)
....+...|++++|.+.|+++...- |+. ... ..++.++.+.++++.|...++...+..+..
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~ 102 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH 102 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC
Confidence 3444455677777777777776642 222 221 244455666677777777776666654433
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.025 Score=49.22 Aligned_cols=110 Identities=16% Similarity=0.179 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhc
Q 038550 260 VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY 339 (423)
Q Consensus 260 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~ 339 (423)
.+.+..+.-|...|+...|.++-.+.. -|+...|...+.+|+..+++++-.++-.. +-++.-|...+.+|.+.
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 345555666777888877777765553 37888888889999999999888776543 33457788888888899
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 038550 340 GNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVREL 385 (423)
Q Consensus 340 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 385 (423)
|+..+|..+..++. +..-+..|.+.|++.+|.+.--+
T Consensus 251 ~~~~eA~~yI~k~~---------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 251 GNKKEASKYIPKIP---------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCHHHHHHHHHhCC---------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 99888888877721 14456778888888888766443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00053 Score=61.30 Aligned_cols=119 Identities=11% Similarity=-0.005 Sum_probs=88.6
Q ss_pred CCCCchHHHHHHHHHHHhcCChHHHHHHh---chhcC----CcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhh
Q 038550 88 GLNFDLFLTNALTDMYAKCGCLNLAQNVF---NISFR----DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVS 160 (423)
Q Consensus 88 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~---~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 160 (423)
+.+.+......+++.+....+++.+..++ +..+. -..+.+++++.|...|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33455566666777777777777777776 22111 233456888899999999999999988888899999999
Q ss_pred HHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhc
Q 038550 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206 (423)
Q Consensus 161 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 206 (423)
++.+|..+.+.|++..|.++...|...+...+..++...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999888888777766666666555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0026 Score=58.39 Aligned_cols=242 Identities=14% Similarity=0.078 Sum_probs=123.9
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHh--ch----------hcCCcchHHHHHHHHhcCCC--hhhHHHHHHHHHhcCCCCc
Q 038550 92 DLFLTNALTDMYAKCGCLNLAQNVF--NI----------SFRDEVSYNILIVGYSQTSD--CSESLSLFSEMRLLGMKHD 157 (423)
Q Consensus 92 ~~~~~~~l~~~~~~~g~~~~a~~~~--~~----------~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~ 157 (423)
....+.+-+..|...|.+++|.++- -. ..-+...++..=.+|.+..+ +-+.+--+++|+++|-.|+
T Consensus 555 ~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~ 634 (1081)
T KOG1538|consen 555 VEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN 634 (1081)
T ss_pred ccccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch
Confidence 3334444555667777777776554 00 01122334444455555544 3334445567777887677
Q ss_pred hhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCC--------------C
Q 038550 158 VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK--------------D 223 (423)
Q Consensus 158 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------------~ 223 (423)
... +...++-.|++.+|-++|.+--.. +..+..|.....+|.|.+++..-... +
T Consensus 635 ~iL---lA~~~Ay~gKF~EAAklFk~~G~e---------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~ 702 (1081)
T KOG1538|consen 635 DLL---LADVFAYQGKFHEAAKLFKRSGHE---------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARN 702 (1081)
T ss_pred HHH---HHHHHHhhhhHHHHHHHHHHcCch---------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhh
Confidence 643 345566678888888887643211 33445555555566665555433210 1
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHH------HHHcCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCh
Q 038550 224 SASWNTLILGYGMLGEVDTAINLFEA------MREDGVGY---DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE 294 (423)
Q Consensus 224 ~~~~~~li~~~~~~g~~~~a~~~~~~------m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 294 (423)
+.-=.+....+...|+.++|..+.-+ +.+-+-+. +..+...+...+-+...+..|-++|..|-+.
T Consensus 703 ~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ 776 (1081)
T KOG1538|consen 703 IKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------ 776 (1081)
T ss_pred cCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH------
Confidence 11111223334455665555544321 11111111 2334444444444555666677777666432
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCHhH-----------HHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 295 MHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDANI-----------WGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~-----------~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
..+++.....+++++|..+-++. ...||+.. |.-.-.+|.+.|+..+|..+++++..
T Consensus 777 ---ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 777 ---KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred ---HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 34567777788888888877776 33444321 12222455566666666666665543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0015 Score=51.45 Aligned_cols=62 Identities=11% Similarity=0.029 Sum_probs=30.5
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGY--DPVSYIAILTACSHGGLVEKGKKYFDEMQA 287 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 287 (423)
.|..+...+...|++++|...|++.......| ...++..+...+...|++++|...++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444445555555555555555554432111 122444555555555555555555555554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0033 Score=47.58 Aligned_cols=50 Identities=8% Similarity=-0.051 Sum_probs=18.8
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHh
Q 038550 268 ACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318 (423)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (423)
+|-..|++++|+..|....... +-+...+-.+..++...|+.+.|.+.|+
T Consensus 78 ~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~A~~aF~ 127 (157)
T PRK15363 78 CCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCYAIKALK 127 (157)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3333344444444444433332 1223333333333344444444433333
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.034 Score=48.97 Aligned_cols=161 Identities=20% Similarity=0.161 Sum_probs=99.0
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCCC-------ChhhHHHHHHHHhc---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038550 198 SILDFYTRSGRIDLANKIFDCLPVK-------DSASWNTLILGYGM---LGEVDTAINLFEAMREDGVGYDPVSYIAILT 267 (423)
Q Consensus 198 ~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 267 (423)
.++-+|....+++...++.+.+... ....-.....++.+ .|+.++|+.++..+....-.+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555677778888888888877643 22222334455566 7889999999988666666778888877776
Q ss_pred HHhc---------cCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-hH---HHHHHH---hhC-------CCCC
Q 038550 268 ACSH---------GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL-ME---DAVKLI---KNL-------PVEP 324 (423)
Q Consensus 268 ~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~---~a~~~~---~~~-------~~~~ 324 (423)
.|-. ....++|...|.+.-+. .|+...=-.+...+...|. .+ +..++- ..+ .-..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 6532 22466777777766553 3443322222222233332 11 222221 111 1234
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 038550 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 360 (423)
+-..+.+++.++.-.|+.++|.+.++++.+..|+..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 566677888888889999999999999988876653
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.08 Score=50.98 Aligned_cols=218 Identities=14% Similarity=0.079 Sum_probs=150.5
Q ss_pred HHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHH--hhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChH
Q 038550 33 FAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPA--CARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLN 110 (423)
Q Consensus 33 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 110 (423)
....+++.+|+....++.++. |+.. |..++.+ +.+.|+.++|..+++.....+.. |..|...+-.+|.+.|+.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 456788999999999988763 4443 4444554 56899999999998888766533 8889999999999999999
Q ss_pred HHHHHh-c--hhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHh----------hHHhh
Q 038550 111 LAQNVF-N--ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA----------AIKQG 177 (423)
Q Consensus 111 ~a~~~~-~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----------~~~~a 177 (423)
+|..+| + ...|+......+..+|.+.+++.+-.++--+|-+. ++-+...+-.+++.....- -..-|
T Consensus 95 ~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 95 EAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 999999 2 33455566667778888888877666555555442 3556667777777665431 12335
Q ss_pred hHHHHHHHHhc-cCcchHHHHHHHHHHHhcCCHHHHHHHhc-----cCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 038550 178 KEIHGVTIRKH-LHTHLFVANSILDFYTRSGRIDLANKIFD-----CLPVKDSASWNTLILGYGMLGEVDTAINLFEAMR 251 (423)
Q Consensus 178 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 251 (423)
.+..+.+.+.+ ..-+..-.......+...|.+++|.+++. .....+...-+--+..+...++|.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 55566666544 22222222233445667889999999983 2233355555566777888899999999999998
Q ss_pred HcCC
Q 038550 252 EDGV 255 (423)
Q Consensus 252 ~~~~ 255 (423)
..|.
T Consensus 254 ~k~~ 257 (932)
T KOG2053|consen 254 EKGN 257 (932)
T ss_pred HhCC
Confidence 8764
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.018 Score=48.27 Aligned_cols=56 Identities=16% Similarity=0.113 Sum_probs=46.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcc---hHHHHHHHHHhcCChhHHHHHHHHHH
Q 038550 332 LLGACRIYGNVELGAWAAEHLFMLKPQHCG---YYILLSNMYAEAGKWDEASKVRELMK 387 (423)
Q Consensus 332 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~ 387 (423)
+.+.|.+.|.+..|..-++.+.+.-|..+. +...++.+|...|..++|..+...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 346688999999999999999998877654 46677889999999999998876654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0021 Score=46.77 Aligned_cols=55 Identities=16% Similarity=0.076 Sum_probs=28.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCChhHHHHHHHH
Q 038550 331 ALLGACRIYGNVELGAWAAEHLFMLKPQ---HCGYYILLSNMYAEAGKWDEASKVREL 385 (423)
Q Consensus 331 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 385 (423)
.+..++...|++++|..++++.....|+ +......++.++...|+.++|++.+-.
T Consensus 43 ~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 43 QLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444555555555555555555554444 333444444455555555555555433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.051 Score=47.25 Aligned_cols=282 Identities=18% Similarity=0.151 Sum_probs=179.9
Q ss_pred HHHHHHHHH--hcCChHHHHHHh----chhcCCcchHHHHHHH--HhcCCChhhHHHHHHHHHhcCCCCchh--hHHHHH
Q 038550 96 TNALTDMYA--KCGCLNLAQNVF----NISFRDEVSYNILIVG--YSQTSDCSESLSLFSEMRLLGMKHDVV--SFMGAI 165 (423)
Q Consensus 96 ~~~l~~~~~--~~g~~~~a~~~~----~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll 165 (423)
|..|-.++. -.|+-..|.+.- .....|....-.++.+ -.-.|+++.|.+-|+.|.. .|... -...|.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHH
Confidence 444444443 346666666665 2334455555555443 4457999999999999975 33322 222333
Q ss_pred HHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC-----CCChh--hHHHHHHHHh---
Q 038550 166 SACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP-----VKDSA--SWNTLILGYG--- 235 (423)
Q Consensus 166 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~--- 235 (423)
-...+.|+.+.|.++-+......... .......+...|..|+|+.|+++.+.-. ++++. .-..|+.+-.
T Consensus 162 leAqr~GareaAr~yAe~Aa~~Ap~l-~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKAPQL-PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhccCC-chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 34456788888888887776654433 3455678889999999999999998544 33332 1122222211
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 038550 236 MLGEVDTAINLFEAMREDGVGYDPV-SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAV 314 (423)
Q Consensus 236 ~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 314 (423)
-.-+...|...-.+..+ +.||.. .-..-..++.+.|+..++-.+++.+-+....|+ .+. +-.+.+.|+. +.
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~--lY~~ar~gdt--a~ 312 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IAL--LYVRARSGDT--AL 312 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHH--HHHHhcCCCc--HH
Confidence 12345566655555444 456543 333445678999999999999999998744443 332 2233455553 33
Q ss_pred HHHhhC----CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH-hcCChhHHHHHHHHHHh
Q 038550 315 KLIKNL----PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA-EAGKWDEASKVRELMKS 388 (423)
Q Consensus 315 ~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 388 (423)
.-+++. ..+| +......+..+....|++..|..--+.+....|. ..+|..|.+.-. ..|+-.++.+.+-+...
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 333322 3455 5567777788889999999999998888888886 467777777654 44999999998887765
Q ss_pred cc
Q 038550 389 RE 390 (423)
Q Consensus 389 ~~ 390 (423)
.-
T Consensus 392 AP 393 (531)
T COG3898 392 AP 393 (531)
T ss_pred CC
Confidence 43
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00084 Score=50.94 Aligned_cols=85 Identities=13% Similarity=0.100 Sum_probs=58.6
Q ss_pred HHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHH
Q 038550 304 LGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASK 381 (423)
Q Consensus 304 ~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 381 (423)
+...|++++|..+|+-+ -..| +..-|..|..++-..++++.|+..|..+..+.+++|......+.+|...|+.+.|+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence 34567777777777665 2222 455566666666677777777777777777777777777777777777777777777
Q ss_pred HHHHHHh
Q 038550 382 VRELMKS 388 (423)
Q Consensus 382 ~~~~m~~ 388 (423)
.|+...+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 7776665
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00055 Score=54.23 Aligned_cols=97 Identities=12% Similarity=0.112 Sum_probs=80.3
Q ss_pred HHhhccc--CCcChhhHHHHHHHHHhC-----CChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcC-------------
Q 038550 12 SYLFHNI--AEKNIVSWNAMVANFAQN-----RLELKALQLVREMPIHNEFPNSVTLTNVLPACARG------------- 71 (423)
Q Consensus 12 ~~~~~~~--~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~------------- 71 (423)
...|+.. ..++-.+|..+++.|.+. |..+=....+..|.+-|+.-|..+|+.|+..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4566665 447889999999998754 77788888899999999999999999999987542
Q ss_pred ---CCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 038550 72 ---HFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC 108 (423)
Q Consensus 72 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 108 (423)
.+-+-|++++++|...|+-||..++..|++.+.+.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2335688999999999999999999999999877664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0011 Score=55.82 Aligned_cols=96 Identities=13% Similarity=0.058 Sum_probs=45.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHhhC-CCCC----CHhHHHHH
Q 038550 262 YIAILTACSHGGLVEKGKKYFDEMQADSVKPTE----MHYACMVDLLGRAGLMEDAVKLIKNL-PVEP----DANIWGAL 332 (423)
Q Consensus 262 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~----~~~~~~~l 332 (423)
|...+....+.|++++|...|+.+.+.- |+. ..+-.+...|...|++++|...|+.+ ...| ....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 4444433344566666666666665541 221 23444455555555555555555544 1112 12233333
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCC
Q 038550 333 LGACRIYGNVELGAWAAEHLFMLKPQH 359 (423)
Q Consensus 333 ~~~~~~~~~~~~a~~~~~~~~~~~p~~ 359 (423)
...+...|+.+.|...|+.+.+..|.+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 344445555555555555555555544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00023 Score=46.39 Aligned_cols=64 Identities=19% Similarity=0.211 Sum_probs=38.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCC
Q 038550 294 EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYG-NVELGAWAAEHLFMLKP 357 (423)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 357 (423)
..+|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|+..++++.+++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 344555556666666666666666655 3334 3445666666666666 56677777776666655
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.003 Score=48.41 Aligned_cols=113 Identities=20% Similarity=0.183 Sum_probs=73.1
Q ss_pred HhccCcHHHHHHHHHHHHHc--CC-CCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHH
Q 038550 269 CSHGGLVEKGKKYFDEMQAD--SV-KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345 (423)
Q Consensus 269 ~~~~~~~~~a~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 345 (423)
....++.+.+...++++... |. -++... ..-.......++.. -......++..+...|++++|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHH
Confidence 34566777788888777765 31 122111 11111222222222 123556677788899999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH-----hccccCCC
Q 038550 346 AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK-----SREAKKNP 395 (423)
Q Consensus 346 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~ 395 (423)
...++.+...+|.+...|..++.+|...|+..+|.++|+++. +.|+.|.+
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 999999999999999999999999999999999999999884 34666654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0008 Score=43.66 Aligned_cols=49 Identities=10% Similarity=0.169 Sum_probs=25.4
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC
Q 038550 271 HGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (423)
..|++++|..+|+.+.... +-+...+..+..+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455555555555555542 234444445555555555555555555555
|
... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.057 Score=50.54 Aligned_cols=155 Identities=9% Similarity=0.070 Sum_probs=96.4
Q ss_pred CCcchhHHhhcccCCcChhhHHHHHHHHHhCCChHHHHHHHhhchhC-CCCCCchhHHHHHHHhhcCCCCccHHHHHHHH
Q 038550 6 SRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIH-NEFPNSVTLTNVLPACARGHFLRPGKEIHARI 84 (423)
Q Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 84 (423)
|++++|.+++-.+..+|. .|..+.+.|+|-...++++.--.. .-..-..+|+.+...++....|++|.+.|..-
T Consensus 748 g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred cchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566666666666654442 345566667776666665432110 00011245666667777777777777766543
Q ss_pred HHcCCCCchHHHHHHHHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHH
Q 038550 85 IRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGA 164 (423)
Q Consensus 85 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 164 (423)
... ...+.++.+...+++-+.+....+.+....-.+...+.+.|.-++|.+.+-+.. .|- ..
T Consensus 823 ~~~---------e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aA 884 (1189)
T KOG2041|consen 823 GDT---------ENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AA 884 (1189)
T ss_pred cch---------HhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HH
Confidence 211 235666666667776666666667788888888999999999999888775542 232 34
Q ss_pred HHHHHhHhhHHhhhHHHHH
Q 038550 165 ISACANLAAIKQGKEIHGV 183 (423)
Q Consensus 165 l~~~~~~~~~~~a~~~~~~ 183 (423)
+..|...++|.+|.++-+.
T Consensus 885 v~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 885 VHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5567777888877776543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0014 Score=56.79 Aligned_cols=130 Identities=12% Similarity=-0.013 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHH----cCCC-CChhhHHHHHHHHHhcCChHHHHHHHhhC-------CCC-CCH
Q 038550 260 VSYIAILTACSHGGLVEKGKKYFDEMQA----DSVK-PTEMHYACMVDLLGRAGLMEDAVKLIKNL-------PVE-PDA 326 (423)
Q Consensus 260 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~-~~~ 326 (423)
..|..|...|.-.|+++.|+...+.=.. .|-+ .....+..|..+++-.|+++.|.+.|+.. +.+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 4567777777778888888876654322 1211 22345667788888888999998888754 222 234
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhc----C--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 327 NIWGALLGACRIYGNVELGAWAAEHLFML----K--PQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
...-+|.++|....+++.|+.++.+-..+ + .....++..|+.+|...|..+.|+...+.-.+.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 45566778888888888888877765442 2 334567888888999999998888877766544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.041 Score=44.82 Aligned_cols=176 Identities=13% Similarity=-0.003 Sum_probs=85.3
Q ss_pred HHHHHhcCCChhhHHHHHHHHHhcCC--CCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhc
Q 038550 129 LIVGYSQTSDCSESLSLFSEMRLLGM--KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206 (423)
Q Consensus 129 l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 206 (423)
....+...|++.+|...|+++...-. +--......++.++.+.|+++.|...++..++.-+.....-+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 34455566777777777777766421 1112344455666667777777777777766654433322222222222211
Q ss_pred CCHHHHHHHhccCCCCC-------hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHH
Q 038550 207 GRIDLANKIFDCLPVKD-------SASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279 (423)
Q Consensus 207 ~~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 279 (423)
....... ....| ...+..++.-|-...-..+|...+..+.+. =...-..+..-|.+.|.+..|.
T Consensus 91 ~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 91 KQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAI 161 (203)
T ss_dssp HHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHH
T ss_pred HhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHH
Confidence 1111111 01111 224555666666666666666655555432 0111122445577777777777
Q ss_pred HHHHHHHHc--CCCCChhhHHHHHHHHHhcCChHHH
Q 038550 280 KYFDEMQAD--SVKPTEMHYACMVDLLGRAGLMEDA 313 (423)
Q Consensus 280 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a 313 (423)
.-++.+++. +.+........++.+|.+.|..+.+
T Consensus 162 ~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 162 IRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 777777776 1111223445566667777766643
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.1 Score=47.45 Aligned_cols=152 Identities=13% Similarity=0.098 Sum_probs=104.9
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038550 224 SASWNTLILGYGMLGEVDTAINLFEAMREDGVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302 (423)
Q Consensus 224 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 302 (423)
..+|-..+..-.+..-+..|..+|.+..+.+..+ +...+.+++..+|. ++.+-|.++|+--.+. +..+..--...+.
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~Yld 443 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLD 443 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHH
Confidence 3456667777777778888888898888887766 66677777776665 6778888888876665 2233444455677
Q ss_pred HHHhcCChHHHHHHHhhC---CCCC--CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC----cchHHHHHHHHHhc
Q 038550 303 LLGRAGLMEDAVKLIKNL---PVEP--DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH----CGYYILLSNMYAEA 373 (423)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~---~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~ 373 (423)
-+...++-..+..+|++. .+.| ...+|..++..-..-|+...+.++-++....-|.+ ...-..++.-|.-.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~ 523 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL 523 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence 777888888888888887 2344 34688888888888899888888888877655521 12233444555555
Q ss_pred CChh
Q 038550 374 GKWD 377 (423)
Q Consensus 374 g~~~ 377 (423)
+.+.
T Consensus 524 d~~~ 527 (656)
T KOG1914|consen 524 DLYP 527 (656)
T ss_pred cccc
Confidence 5543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0058 Score=44.47 Aligned_cols=91 Identities=11% Similarity=0.026 Sum_probs=54.8
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHhcCCCCc--hhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCc--chHHHHHHHHHH
Q 038550 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHD--VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT--HLFVANSILDFY 203 (423)
Q Consensus 128 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~ 203 (423)
.+..++-..|+.++|+.+|++....|...+ ...+..+...+...|++++|..+++......+.+ +......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345666777888888888888888775544 2345556667777778888888877776643321 111112233344
Q ss_pred HhcCCHHHHHHHhcc
Q 038550 204 TRSGRIDLANKIFDC 218 (423)
Q Consensus 204 ~~~~~~~~A~~~~~~ 218 (423)
...|+.++|...+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 555666665555433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.084 Score=45.96 Aligned_cols=287 Identities=13% Similarity=0.066 Sum_probs=162.4
Q ss_pred hhHHHHHHHHHh--CCChHHHHHHHhhchhCCCCCCchhHHHHHHH--hhcCCCCccHHHHHHHHHHcCCCCchHHHHHH
Q 038550 24 VSWNAMVANFAQ--NRLELKALQLVREMPIHNEFPNSVTLTNVLPA--CARGHFLRPGKEIHARIIRKGLNFDLFLTNAL 99 (423)
Q Consensus 24 ~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 99 (423)
..|..|-.++.. .|+-..|.++-.+..+. +.-|...+..++.+ -.-.|+++.|.+-|+.|.... +...--...|
T Consensus 83 rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgL 160 (531)
T COG3898 83 RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGL 160 (531)
T ss_pred hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHH
Confidence 345556555543 46777777766554422 33355555555544 345788888888888887421 1111112233
Q ss_pred HHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcC-CCCchh--hHHHHHHHHHh--
Q 038550 100 TDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG-MKHDVV--SFMGAISACAN-- 170 (423)
Q Consensus 100 ~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~--~~~~ll~~~~~-- 170 (423)
.-.--+.|..+.|...- ...+.-...+...+...+..|+|+.|+++++.-+... +.++.. .-..|+.+-..
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 33334667777777666 3334455677888888888899999888888776543 333332 12223322211
Q ss_pred -HhhHHhhhHHHHHHHHhccCcchHHH-HHHHHHHHhcCCHHHHHHHhccCC--CCChhhHHHHHHHHhccCCHHHHHHH
Q 038550 171 -LAAIKQGKEIHGVTIRKHLHTHLFVA-NSILDFYTRSGRIDLANKIFDCLP--VKDSASWNTLILGYGMLGEVDTAINL 246 (423)
Q Consensus 171 -~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~ 246 (423)
..+...|...-.+..+ +.|+..-- ..-..++.+.|+..++-.+++.+= .|.+..+... .+.+.|+ .+..-
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY--~~ar~gd--ta~dR 314 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLY--VRARSGD--TALDR 314 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHH--HHhcCCC--cHHHH
Confidence 1234444444444443 23332211 223467788888888888887764 3444433322 2345554 33333
Q ss_pred HHHHHHc-CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCChHHHHHHHhhC
Q 038550 247 FEAMRED-GVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG-RAGLMEDAVKLIKNL 320 (423)
Q Consensus 247 ~~~m~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~ 320 (423)
++..... ..+| +..+...+..+-...|++..|..--+.... ..|....|..|.+.-. ..|+-.++...+.+.
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 3333221 1344 345666667777778888877776665554 4677777776665543 458888888887765
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.14 Score=48.38 Aligned_cols=326 Identities=11% Similarity=0.080 Sum_probs=167.6
Q ss_pred HHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCC--ccHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 038550 27 NAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFL--RPGKEIHARIIRKGLNFDLFLTNALTDMYA 104 (423)
Q Consensus 27 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 104 (423)
..+|+-+...+.+..|+++-..+...-.. ....|.....-+.+..+. +.+.+..++=+.... .....|..+..--.
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAY 518 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHH
Confidence 34556667777788888877666542111 134555555555444321 122222222121111 23345566666666
Q ss_pred hcCChHHHHHHhchhcCCc---------chHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHH
Q 038550 105 KCGCLNLAQNVFNISFRDE---------VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIK 175 (423)
Q Consensus 105 ~~g~~~~a~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 175 (423)
.+|+.+-|..+++..+++. .-+...+.-....|+.+....++-.+... .+...|...+ .+..
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p 589 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQP 589 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhch
Confidence 7888888888884444322 22344455555566666666555555442 1111221111 2333
Q ss_pred hhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccC------CCCChhhHHHHHHHHhccCC----------
Q 038550 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCL------PVKDSASWNTLILGYGMLGE---------- 239 (423)
Q Consensus 176 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------~~~~~~~~~~li~~~~~~g~---------- 239 (423)
.|..+|.+..+..-. ..+-+.|-...+...+..+--+- ..+-..........+.+...
T Consensus 590 ~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed 663 (829)
T KOG2280|consen 590 LALSLYRQFMRHQDR------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALED 663 (829)
T ss_pred hhhHHHHHHHHhhch------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHH
Confidence 444444444432111 11222222222222221111100 00111112222233333222
Q ss_pred HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHh
Q 038550 240 VDTAINLFEAMRE-DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK 318 (423)
Q Consensus 240 ~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (423)
..+-+.+.+.+.. .|......+.+--+.-+...|+..+|.++-.+.+ -||...|..-+.+++..+++++-+++-+
T Consensus 664 ~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 1111222222221 2222333455555666777788888888777664 4788888888888999999888877776
Q ss_pred hCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 038550 319 NLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRE 384 (423)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 384 (423)
... .+.-|.-...+|.+.|+.++|.+++-+..... -.+.+|.+.|++.+|.++--
T Consensus 740 skk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 740 SKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred ccC---CCCCchhHHHHHHhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHHH
Confidence 653 24556677788889999999888876643322 45678888888888876643
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.012 Score=49.39 Aligned_cols=115 Identities=15% Similarity=0.060 Sum_probs=87.7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---ChHHHHHHHhhC
Q 038550 244 INLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG---LMEDAVKLIKNL 320 (423)
Q Consensus 244 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~ 320 (423)
..-++.-...+ +-|...|..|..+|...|+.+.|..-|....+.. +++...+..+..++.... ...++..+|+++
T Consensus 142 ~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 142 IARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred HHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 33334333332 3378899999999999999999999999999873 456677777777665432 467888999988
Q ss_pred -CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 038550 321 -PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 321 -~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 360 (423)
...| |+....-|...+...|++.+|...|+.+.+..|.+.
T Consensus 220 l~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 220 LALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 5566 566666677889999999999999999999887653
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.019 Score=46.98 Aligned_cols=136 Identities=12% Similarity=0.066 Sum_probs=89.5
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHH---
Q 038550 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV--- 301 (423)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--- 301 (423)
...+.++..+.-.|.+.-....+++.++...+.++.....+...-.+.|+.+.|..+|++..+..-..+..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34456666667777888888888888887655677777788888888888888888888776552234433443333
Q ss_pred --HHHHhcCChHHHHHHHhhCCC--CCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 038550 302 --DLLGRAGLMEDAVKLIKNLPV--EPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 302 --~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 360 (423)
..|.-.+++..|...+.++.. ..|+...|.-.-...-.|+...|++..+.+.+..|...
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 334455677777777777632 22444444444444556778888888888888777643
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00045 Score=40.19 Aligned_cols=42 Identities=21% Similarity=0.269 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHH
Q 038550 327 NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN 368 (423)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 368 (423)
.++..+..+|...|++++|+++++++++..|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357778899999999999999999999999999988887764
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.073 Score=46.65 Aligned_cols=257 Identities=9% Similarity=-0.110 Sum_probs=114.9
Q ss_pred HHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 038550 27 NAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC 106 (423)
Q Consensus 27 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 106 (423)
......+.+..++..|+..+....+... -+..-|..-+..+...++++.+.--.+.-++.. +-....+.-.-.++...
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~p-d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMCP-DNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLAL 130 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhCc-cchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhh
Confidence 3444556667778888888888877642 234455555556666666666665554444332 11112233333344444
Q ss_pred CChHHHHHHhch----------------h-----cCCcchHHHH-HHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHH
Q 038550 107 GCLNLAQNVFNI----------------S-----FRDEVSYNIL-IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGA 164 (423)
Q Consensus 107 g~~~~a~~~~~~----------------~-----~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 164 (423)
++..+|.+.++. . +|....|..+ ..++.-.|++++|.+.--..++.. ..+......-
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vr 209 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVR 209 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhc
Confidence 444444443310 0 0111122222 234455566666666555554432 1122222111
Q ss_pred HHHHHhHhhHHhhhHHHHHHHHhccCcchH-----------HHHHHHHHHHhcCCHHHHHHHhccCCC-------CChhh
Q 038550 165 ISACANLAAIKQGKEIHGVTIRKHLHTHLF-----------VANSILDFYTRSGRIDLANKIFDCLPV-------KDSAS 226 (423)
Q Consensus 165 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~ 226 (423)
..++.-.++.+.+...|++.+..++..... .+..-.+-..+.|++.+|.+.|.+... ++...
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 222233455566666666555543321110 001111223345555555555554431 12333
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 038550 227 WNTLILGYGMLGEVDTAINLFEAMREDGVGYD-PVSYIAILTACSHGGLVEKGKKYFDEMQAD 288 (423)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 288 (423)
|........+.|+.++|+.--+..... .|. ...|..-..++...+++++|.+-++...+.
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444445555555555555544432 111 112222233344445555555555555543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0011 Score=43.69 Aligned_cols=63 Identities=16% Similarity=0.213 Sum_probs=47.4
Q ss_pred HHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHH
Q 038550 302 DLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI 364 (423)
Q Consensus 302 ~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 364 (423)
..|.+.+++++|.++++++ ...| ++..+......+...|++++|...++++.+..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 4567788888888888877 4455 5556667777888888888888888888888887665543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0016 Score=57.93 Aligned_cols=62 Identities=10% Similarity=-0.042 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCH----hHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 294 EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDA----NIWGALLGACRIYGNVELGAWAAEHLFML 355 (423)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 355 (423)
...++.+..+|...|++++|+..|++. .+.|+. ..|..+..+|...|+.++|+..++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344444455555555555555555443 344432 12444555555555555555555555544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00026 Score=38.36 Aligned_cols=33 Identities=27% Similarity=0.485 Sum_probs=30.4
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCChhHHHH
Q 038550 349 AEHLFMLKPQHCGYYILLSNMYAEAGKWDEASK 381 (423)
Q Consensus 349 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 381 (423)
|+++++.+|+++.+|..++..|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999999999999999999999999863
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.024 Score=41.10 Aligned_cols=141 Identities=11% Similarity=0.063 Sum_probs=85.2
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 038550 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313 (423)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 313 (423)
+.-.|..++..+++.+.... .+..-+|.+|.-....-+-+-..++++.+-+ -.|. ..+|++...
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDi----------s~C~NlKrV 75 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDI----------SKCGNLKRV 75 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-G----------GG-S-THHH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------hhhcchHHH
Confidence 34568888888888887764 2455666666554444444444444443332 2222 123444444
Q ss_pred HHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcccc
Q 038550 314 VKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAK 392 (423)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 392 (423)
...+-.++ .+....+..+..+..+|+-+.-.+++..+.+.+..+|.+...++.+|.+.|+..++.+++++.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44444442 234455666788889999999999999988777777899999999999999999999999999998874
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0094 Score=50.34 Aligned_cols=94 Identities=16% Similarity=0.128 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhC-CCCCCH----hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc---chHHHHHH
Q 038550 297 YACMVDLLGRAGLMEDAVKLIKNL-PVEPDA----NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC---GYYILLSN 368 (423)
Q Consensus 297 ~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~ 368 (423)
|...+..+.+.|++++|...|+.+ ...|+. ..+--+...|...|++++|...|+.+.+..|+++ .++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444444444556677777666665 223332 3445556666677777777777777766655543 33444455
Q ss_pred HHHhcCChhHHHHHHHHHHhcc
Q 038550 369 MYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 369 ~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
++...|++++|..+|+++.+..
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 6666777777777777666543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.015 Score=47.31 Aligned_cols=49 Identities=12% Similarity=0.034 Sum_probs=38.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcch---HHHHHHHHHhcCChhHHH
Q 038550 332 LLGACRIYGNVELGAWAAEHLFMLKPQHCGY---YILLSNMYAEAGKWDEAS 380 (423)
Q Consensus 332 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~ 380 (423)
+...|.+.|.+..|..-++.+++.-|+.+.. ...++.+|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 4577899999999999999999998887644 566788899999887544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0071 Score=44.49 Aligned_cols=80 Identities=13% Similarity=0.155 Sum_probs=46.4
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHH---------------HcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc-
Q 038550 225 ASWNTLILGYGMLGEVDTAINLFEAMR---------------EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD- 288 (423)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~---------------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~- 288 (423)
.++..+|.++++.|+.+....+++..= .....|+..+..+++.+|+..+++..|.++++...+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344555555555555555555554331 1224566666666666666666666666666666665
Q ss_pred CCCCChhhHHHHHHHH
Q 038550 289 SVKPTEMHYACMVDLL 304 (423)
Q Consensus 289 ~~~~~~~~~~~l~~~~ 304 (423)
+++.+..+|..|++-.
T Consensus 83 ~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 6555666666666443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.012 Score=48.18 Aligned_cols=125 Identities=11% Similarity=0.054 Sum_probs=55.1
Q ss_pred HHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHhchhcC-----CcchHHH-----HHH
Q 038550 62 TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFR-----DEVSYNI-----LIV 131 (423)
Q Consensus 62 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~-----l~~ 131 (423)
+.++..+...+.+.-....+.+.++...+-++.....|++.-.+.|+.+.|...|+..++ |....+. ...
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 344444444455555555555555544444445555555555555555555555521111 1112211 222
Q ss_pred HHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHh
Q 038550 132 GYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK 187 (423)
Q Consensus 132 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 187 (423)
.|.-.+++..|...+.+..... +.|....|.-.-+..-.|+...|.+.++.+...
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344445555555555444432 223333333333333445555555555555544
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.08 Score=41.10 Aligned_cols=98 Identities=10% Similarity=-0.002 Sum_probs=45.6
Q ss_pred CCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC-----CChhhHHH
Q 038550 155 KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-----KDSASWNT 229 (423)
Q Consensus 155 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~ 229 (423)
.|+...-..+..++...|+..+|...|++...--...|....-.+.++....+++..|...++.+-+ .++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 3444444445555555555555555555554443444444444444444444555444444444321 12223333
Q ss_pred HHHHHhccCCHHHHHHHHHHHHH
Q 038550 230 LILGYGMLGEVDTAINLFEAMRE 252 (423)
Q Consensus 230 li~~~~~~g~~~~a~~~~~~m~~ 252 (423)
+...+...|++.+|..-|+....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH
Confidence 44444455555555555555444
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0071 Score=52.63 Aligned_cols=95 Identities=8% Similarity=-0.081 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHc----CC-CCChhhHHHHHHHHHhcCChHHHHHHHhhC-------C-CCCCH
Q 038550 260 VSYIAILTACSHGGLVEKGKKYFDEMQAD----SV-KPTEMHYACMVDLLGRAGLMEDAVKLIKNL-------P-VEPDA 326 (423)
Q Consensus 260 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~-~~~~~ 326 (423)
..+..+..++.-.|+++.|.+.|+..... |- .....+.-+|...|.-..++++|+.++.+- + ..-..
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~ 315 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL 315 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34555555555556666666555543322 10 111223334455555555555555554432 1 11234
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 327 NIWGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
..+.+|..++...|.-++|+.+.+...+
T Consensus 316 RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 316 RACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4555566666666666666555555443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.001 Score=44.58 Aligned_cols=62 Identities=18% Similarity=0.172 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC---cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 327 NIWGALLGACRIYGNVELGAWAAEHLFML----KPQH---CGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
.+++.+...|...|++++|+..++++.+. ++.+ ..++..++.+|...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46777888888888999988888888764 2222 44577888999999999999999988754
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.35 Score=45.93 Aligned_cols=103 Identities=19% Similarity=0.090 Sum_probs=78.1
Q ss_pred HHHHHHHHHc-CCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 038550 279 KKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357 (423)
Q Consensus 279 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 357 (423)
+++.+.+... |..-...+.+--+.-+...|+..+|.++-++.+ -||...|.-=+.++...+++++-+++-+. ..+
T Consensus 668 l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~aLa~~~kweeLekfAks---kks 743 (829)
T KOG2280|consen 668 LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTALADIKKWEELEKFAKS---KKS 743 (829)
T ss_pred HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-CcchhhHHHHHHHHHhhhhHHHHHHHHhc---cCC
Confidence 3444444444 444455566667778888999999999999997 68888888888999999999976655433 222
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 038550 358 QHCGYYILLSNMYAEAGKWDEASKVRELMK 387 (423)
Q Consensus 358 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 387 (423)
|--|.-.+.+|.+.|+.+||..++.+..
T Consensus 744 --PIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 744 --PIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred --CCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 5568888899999999999999987653
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.029 Score=49.01 Aligned_cols=95 Identities=11% Similarity=0.067 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhC-CCC-CCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038550 295 MHYACMVDLLGRAGLMEDAVKLIKNL-PVE-PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAE 372 (423)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 372 (423)
.+++.|.-+|.+.+++.+|++.-.+. ... +|....-.=..++...|+++.|+..|+++.+..|.|-.+-..++.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45667778889999999999887766 333 4666666667899999999999999999999999998888888877776
Q ss_pred cCChhHH-HHHHHHHHhc
Q 038550 373 AGKWDEA-SKVRELMKSR 389 (423)
Q Consensus 373 ~g~~~~A-~~~~~~m~~~ 389 (423)
...+.+. .++|..|...
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 6666554 7889998764
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.39 Score=42.86 Aligned_cols=128 Identities=13% Similarity=0.066 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCHh-HHHHHHHHH
Q 038550 260 VSYIAILTACSHGGLVEKGKKYFDEMQADS-VKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDAN-IWGALLGAC 336 (423)
Q Consensus 260 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~ 336 (423)
..|...+.+..+...++.|..+|-++.+.| +.++...+++++..++ .|+..-|..+|+-- ..-||.. ..+..+..+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 345566777777788899999999999987 6788899999998776 67888888888753 3345444 445667778
Q ss_pred HhcCChhHHHHHHHHHHhcCCCC--cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 337 RIYGNVELGAWAAEHLFMLKPQH--CGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 337 ~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
...++-..|..+|+...+.-..+ ...|..++..-..-|+...+..+=++|.+
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 88899999999999665533222 45677888777778888777766666644
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.33 Score=43.03 Aligned_cols=167 Identities=16% Similarity=0.083 Sum_probs=106.3
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHhc---cCcHHHHHHHHHHHHHcCCCCChhhH
Q 038550 224 SASWNTLILGYGMLGEVDTAINLFEAMREDG---VGYDPVSYIAILTACSH---GGLVEKGKKYFDEMQADSVKPTEMHY 297 (423)
Q Consensus 224 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~ 297 (423)
..+...++-+|....+++..+++++.+.... +.-....-....-++-+ .|+.++|..++..+....-.++..+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3344466667999999999999999998752 11122333344556677 89999999999996666557888888
Q ss_pred HHHHHHHH----h-----cCChHHHHHHHhhC-CCCCCHhHHHHHHHHHHhcCC-hh---HHHHHHHH----HHhcC--C
Q 038550 298 ACMVDLLG----R-----AGLMEDAVKLIKNL-PVEPDANIWGALLGACRIYGN-VE---LGAWAAEH----LFMLK--P 357 (423)
Q Consensus 298 ~~l~~~~~----~-----~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~-~~---~a~~~~~~----~~~~~--p 357 (423)
..+.+.|- . ....++|...|.+. .+.||...--.+...+...|. .+ +..++-.+ ..+.+ .
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 88877663 2 22477888888877 556655432222222333332 22 22222211 11122 1
Q ss_pred CCcch--HHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 358 QHCGY--YILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 358 ~~~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
..... +..++.+..-.|++++|.+.+++|....
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 22222 3467788889999999999999998763
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.068 Score=49.56 Aligned_cols=176 Identities=14% Similarity=0.124 Sum_probs=93.9
Q ss_pred hHHHHHHHHHhCCCh--HHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHH
Q 038550 25 SWNAMVANFAQNRLE--LKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDM 102 (423)
Q Consensus 25 ~~~~ll~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 102 (423)
.++..-.+|.+.++. -+.+.-++++++.|-.|+... +...|+-.|++.+|.++|.+ .|.+ |..+.+
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAlEm 667 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRALEM 667 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhHHHH
Confidence 344444556555443 344445566777776676543 33446667788888777753 3332 223444
Q ss_pred HHhcCChHHHHHHh-chh---------c-----CCcchHHHHHHHHhcCCChhhHHHHHHH------HHhcCC---CCch
Q 038550 103 YAKCGCLNLAQNVF-NIS---------F-----RDEVSYNILIVGYSQTSDCSESLSLFSE------MRLLGM---KHDV 158 (423)
Q Consensus 103 ~~~~g~~~~a~~~~-~~~---------~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~------m~~~~~---~~~~ 158 (423)
|.....++.|.++. ... + .++.-=.+....+...|+.++|..+.-+ +.+.+- ..+.
T Consensus 668 yTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~er 747 (1081)
T KOG1538|consen 668 YTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAER 747 (1081)
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhh
Confidence 44445555555554 100 0 0111112345556667777777665421 111111 1223
Q ss_pred hhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC
Q 038550 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV 221 (423)
Q Consensus 159 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 221 (423)
.+...+..-+.+...+..|-++|..|-.. .++++.....++|++|..+-++.++
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 34444444444555666677777665432 3567777778888888888877764
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.75 Score=44.62 Aligned_cols=133 Identities=11% Similarity=-0.109 Sum_probs=72.9
Q ss_pred HhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcC-CCCchHHHHHHHHHHHhcCChHHH
Q 038550 34 AQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKG-LNFDLFLTNALTDMYAKCGCLNLA 112 (423)
Q Consensus 34 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a 112 (423)
.+.|++..+..+...+....+ ..-..|..+...+. ....+ ++-.-+.+.. .+.....-...+..+.+.+++...
T Consensus 44 ~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~---ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~ 118 (644)
T PRK11619 44 WDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAV---QVTNFIRANPTLPPARSLQSRFVNELARREDWRGL 118 (644)
T ss_pred HHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHH---HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHH
Confidence 456677777776666542211 11112222222111 11222 3333333332 222333444555667778888888
Q ss_pred HHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHh
Q 038550 113 QNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA 172 (423)
Q Consensus 113 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 172 (423)
..++...+.+...-..+..+....|+.++|....+.+-..| ...+..+..++..+.+.|
T Consensus 119 ~~~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 119 LAFSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSG 177 (644)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcC
Confidence 88444445566666778888888898888877777776555 334556666666655444
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.031 Score=42.72 Aligned_cols=69 Identities=14% Similarity=0.255 Sum_probs=40.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc-----CCCCChhh
Q 038550 227 WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-----SVKPTEMH 296 (423)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~ 296 (423)
...++..+...|+++.|..+.+.+.... +.+...|..+|.+|...|+...|.++|+.+.+. |+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4445556666777777777777777653 236667777777777777777777777665432 66666554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.09 Score=39.22 Aligned_cols=60 Identities=23% Similarity=0.195 Sum_probs=43.3
Q ss_pred HHHhcCChHHHHHHHhhC----CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcch
Q 038550 303 LLGRAGLMEDAVKLIKNL----PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGY 362 (423)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 362 (423)
...+.|++++|.+.|+.+ +..| ....-..|+.+|.+.+++++|...+++.+++.|.++.+
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 345677788888777777 1222 33455667788888888888888888888888887765
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.03 Score=40.51 Aligned_cols=87 Identities=21% Similarity=0.184 Sum_probs=42.6
Q ss_pred HHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCcc---hHHHHHHHHHhcCChh
Q 038550 304 LGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLK-PQHCG---YYILLSNMYAEAGKWD 377 (423)
Q Consensus 304 ~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~---~~~~l~~~~~~~g~~~ 377 (423)
+...|+.+.|++.|.+. .+.| ....||.-..++.-+|+.++|++-++++.++. |.... .|..-+..|...|+-+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 34455555555555544 2222 44455555555555555555555555555543 22111 1333334455555555
Q ss_pred HHHHHHHHHHhcc
Q 038550 378 EASKVRELMKSRE 390 (423)
Q Consensus 378 ~A~~~~~~m~~~~ 390 (423)
.|..-|+...+.|
T Consensus 133 ~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 133 AARADFEAAAQLG 145 (175)
T ss_pred HHHHhHHHHHHhC
Confidence 5555555544443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0046 Score=41.37 Aligned_cols=27 Identities=11% Similarity=0.284 Sum_probs=14.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038550 261 SYIAILTACSHGGLVEKGKKYFDEMQA 287 (423)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 287 (423)
+|+.+...|...|++++|+..|++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~ 33 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALD 33 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555555555555555443
|
... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.17 Score=46.41 Aligned_cols=164 Identities=15% Similarity=0.108 Sum_probs=110.8
Q ss_pred HHHHhcCCChhhHHHHHHH-HHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCC
Q 038550 130 IVGYSQTSDCSESLSLFSE-MRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208 (423)
Q Consensus 130 ~~~~~~~~~~~~a~~~~~~-m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 208 (423)
.....-.++++++.+.+.. -.-..++ ....+.++..+.+.|..+.|.++...- ..-.+...+.|+
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~ 333 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGN 333 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCC
Confidence 3445567888887777651 1111122 445778888888899999988875432 234456678999
Q ss_pred HHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 038550 209 IDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288 (423)
Q Consensus 209 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 288 (423)
++.|.++.+... +...|..|.....+.|+++-|.+.|.+... +..|+-.|...|+.+...++.+.....
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999999998877 777999999999999999999999987553 556666778888888888888777776
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCC
Q 038550 289 SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP 324 (423)
Q Consensus 289 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 324 (423)
| . ++....++.-.|+.++..+++.+.+.-|
T Consensus 403 ~-~-----~n~af~~~~~lgd~~~cv~lL~~~~~~~ 432 (443)
T PF04053_consen 403 G-D-----INIAFQAALLLGDVEECVDLLIETGRLP 432 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHTT-HH
T ss_pred c-C-----HHHHHHHHHHcCCHHHHHHHHHHcCCch
Confidence 5 2 4555666777899999998888776333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.35 Score=45.00 Aligned_cols=161 Identities=14% Similarity=0.106 Sum_probs=108.6
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCCCH------HHHHHHHHHHhc----cCcHHHHHHHHHHHHHcCCCCCh
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDG-VGYDP------VSYIAILTACSH----GGLVEKGKKYFDEMQADSVKPTE 294 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~------~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 294 (423)
.+..++....-.||-+.+++.+.+..+.+ ++ .+ ..|..++..++. ....+.|.++++.+... -|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~-~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIR-SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCc
Confidence 44555666667788888888877765532 22 11 234444444433 45678899999999886 4666
Q ss_pred hhHHHH-HHHHHhcCChHHHHHHHhhCCC-C-----CCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHH-H
Q 038550 295 MHYACM-VDLLGRAGLMEDAVKLIKNLPV-E-----PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL-L 366 (423)
Q Consensus 295 ~~~~~l-~~~~~~~~~~~~a~~~~~~~~~-~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-l 366 (423)
..|... .+.+...|++++|++.|++... . .....+--+...+....++++|...+.++.+....+..+|.- .
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 555433 3556678999999999997621 1 123344445566788899999999999999987776666553 4
Q ss_pred HHHHHhcCCh-------hHHHHHHHHHHhc
Q 038550 367 SNMYAEAGKW-------DEASKVRELMKSR 389 (423)
Q Consensus 367 ~~~~~~~g~~-------~~A~~~~~~m~~~ 389 (423)
+.++...|+. ++|.+++.+....
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 4556677888 8888888887654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.28 Score=37.08 Aligned_cols=126 Identities=13% Similarity=0.064 Sum_probs=79.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038550 227 WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR 306 (423)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 306 (423)
...++..+...+.+......++.+...+. .+...++.++..|++.+. .+....++. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 44566667677788888888888877763 566778888888876543 333344332 1233444556777778
Q ss_pred cCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhc-CChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038550 307 AGLMEDAVKLIKNLPVEPDANIWGALLGACRIY-GNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371 (423)
Q Consensus 307 ~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 371 (423)
.+.++++.-++.+++. +...+..+... ++++.|.+++.+ +.++..|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 8888888888888752 22223333333 777877777665 335566777666554
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.3 Score=39.82 Aligned_cols=201 Identities=12% Similarity=0.030 Sum_probs=89.8
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHH
Q 038550 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYT 204 (423)
Q Consensus 125 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (423)
.|.....+|...+++++|...+.+..+. ...+...| -..+..+.|..+.+++.+.. --...|+.-...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~kls--Evvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKLS--EVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHH
Confidence 4555566666677777777766655431 11111111 11222333333333333321 11233444555566
Q ss_pred hcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHc---CCC--CCHHHHHHHHHHHhccCcHHHHH
Q 038550 205 RSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED---GVG--YDPVSYIAILTACSHGGLVEKGK 279 (423)
Q Consensus 205 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~--p~~~~~~~ll~~~~~~~~~~~a~ 279 (423)
.+|.++.|-..+++.- -...+.++++|++++++.... +-+ --...+..+-..+.+..++++|-
T Consensus 103 E~GspdtAAmaleKAa------------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAA------------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred HhCCcchHHHHHHHHH------------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 6666655544443221 112344566666666654321 100 01123344444555666666555
Q ss_pred HHHHHHHHcC--C--CCC-hhhHHHHHHHHHhcCChHHHHHHHhhC---C--CC-CCHhHHHHHHHHHHhcCChhHHHHH
Q 038550 280 KYFDEMQADS--V--KPT-EMHYACMVDLLGRAGLMEDAVKLIKNL---P--VE-PDANIWGALLGACRIYGNVELGAWA 348 (423)
Q Consensus 280 ~~~~~~~~~~--~--~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~---~--~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 348 (423)
..+.+-.... + -++ ...|-..|-.|....++..|...++.- + .. .+..+...|+.+| ..||.+++..+
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 5444322210 0 111 122334444455556666666666653 1 11 2444555555554 44555554443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.47 Score=40.02 Aligned_cols=144 Identities=14% Similarity=0.117 Sum_probs=66.2
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 038550 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313 (423)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 313 (423)
....|++..|..+|......... +...-..+..+|...|+.+.|..++..+-..--.........-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34555666666666655554222 23344445555666666666666655543321111111111223333344444433
Q ss_pred HHHHhhCCCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCcchHHHHHHHHHhcCChhH
Q 038550 314 VKLIKNLPVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLK--PQHCGYYILLSNMYAEAGKWDE 378 (423)
Q Consensus 314 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~ 378 (423)
..+-++..-.| |...-..+...+...|+.+.|.+.+-.+.+.+ -.+...-..++..+.-.|.-+.
T Consensus 223 ~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 223 QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 44444443344 44444555555556666666655554444432 3334444555555555554333
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.05 Score=45.09 Aligned_cols=98 Identities=20% Similarity=0.269 Sum_probs=77.4
Q ss_pred HHHhccCC--CCChhhHHHHHHHHhc-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC------------
Q 038550 213 NKIFDCLP--VKDSASWNTLILGYGM-----LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG------------ 273 (423)
Q Consensus 213 ~~~~~~~~--~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~------------ 273 (423)
+..|.... +.|-.+|...+..+.. .+.++-....++.|.+.|+.-|..+|..||+.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 45555555 5577788888877654 3567777788899999999999999999999876642
Q ss_pred ----cHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 038550 274 ----LVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310 (423)
Q Consensus 274 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 310 (423)
+-.-++.++++|...|+.||..+-..|+.++.+.+-.
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2244789999999999999999999999999887753
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.041 Score=45.61 Aligned_cols=101 Identities=18% Similarity=0.141 Sum_probs=57.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCChHHHHHHHhhC----CCCC-CHhHHHHHH
Q 038550 261 SYIAILTACSHGGLVEKGKKYFDEMQADS--VKPTEMHYACMVDLLGRAGLMEDAVKLIKNL----PVEP-DANIWGALL 333 (423)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~-~~~~~~~l~ 333 (423)
.|+.-+.. .+.|++..|...|...++.. -.-....+-.|..++...|++++|...|..+ +..| -+..+-.|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45555543 34566777777777777652 1112233444666666677777766666555 2222 234555555
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCcch
Q 038550 334 GACRIYGNVELGAWAAEHLFMLKPQHCGY 362 (423)
Q Consensus 334 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 362 (423)
....+.|+.++|...|+++.+.-|..+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 56666666666666666666666665443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.19 Score=42.95 Aligned_cols=149 Identities=14% Similarity=0.030 Sum_probs=65.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHH----HHHHHHHhcCChHH
Q 038550 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA----CMVDLLGRAGLMED 312 (423)
Q Consensus 237 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~ 312 (423)
.|+..+|-..++++.+. .+.|..++...=.+|...|+.+.-...++++... ..++...|. .+.-++..+|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 34455555555555543 2224444444444555555555555555555443 122222222 22222335555555
Q ss_pred HHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC----cchHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 313 AVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH----CGYYILLSNMYAEAGKWDEASKVRELM 386 (423)
Q Consensus 313 a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m 386 (423)
|++.-++. .+.| |.....++...+-..|+..++.++..+-...-... ..-|...+-.+...+.++.|+++|+.=
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 55555544 3333 44444444455555555555555444432211000 011223333445555666666655544
Q ss_pred H
Q 038550 387 K 387 (423)
Q Consensus 387 ~ 387 (423)
.
T Consensus 274 i 274 (491)
T KOG2610|consen 274 I 274 (491)
T ss_pred H
Confidence 3
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.043 Score=49.15 Aligned_cols=61 Identities=10% Similarity=0.019 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHhhC
Q 038550 258 DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE----MHYACMVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 258 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (423)
+...++.+..+|...|++++|...|++.++. .|+. .+|..+..+|...|+.++|++.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5677888888899999999999999888875 4553 34778888888999999999888877
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.12 Score=39.48 Aligned_cols=84 Identities=7% Similarity=-0.077 Sum_probs=66.3
Q ss_pred HhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhH
Q 038550 67 ACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSES 142 (423)
Q Consensus 67 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a 142 (423)
-+-..|++++|..+|.-+...+ .-+..-+..|..++-..+++++|...| .....|...+.....++...|+.+.|
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 3557899999999998887765 345666778888888889999999888 33456777777788888889999999
Q ss_pred HHHHHHHHh
Q 038550 143 LSLFSEMRL 151 (423)
Q Consensus 143 ~~~~~~m~~ 151 (423)
...|.....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 988888776
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.19 Score=42.21 Aligned_cols=142 Identities=8% Similarity=-0.079 Sum_probs=86.3
Q ss_pred HHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHh---c
Q 038550 30 VANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAK---C 106 (423)
Q Consensus 30 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~ 106 (423)
.......|++..|..+|....+.. +-+...-..+..++...|+.+.|..++..+....-.........-+..+.+ .
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 344567788888888887777653 224456666777788888888888888776543212222222223333333 3
Q ss_pred CChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCC-CCchhhHHHHHHHHHhHh
Q 038550 107 GCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGM-KHDVVSFMGAISACANLA 172 (423)
Q Consensus 107 g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~ 172 (423)
++.....+-+...+.|...-..+...+...|+.+.|++.+-.+..+.. --|...-..++..+.-.|
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 444455555555566767777777788888888888877666655421 234455566666666555
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.079 Score=39.02 Aligned_cols=80 Identities=14% Similarity=0.147 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhh-CCCCCCHhHHHHHHHHH
Q 038550 258 DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKN-LPVEPDANIWGALLGAC 336 (423)
Q Consensus 258 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~l~~~~ 336 (423)
|..++..++.++++.|+.+....+++..- |+.++...- .+. +.. -+..|+..+..+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~---------~~~-------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKK---------EGD-------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccc---------cCc-------cCCCCCCCCCHHHHHHHHHHH
Confidence 34567777888888888877777765432 222211000 000 111 12445555555666666
Q ss_pred HhcCChhHHHHHHHHHHhc
Q 038550 337 RIYGNVELGAWAAEHLFML 355 (423)
Q Consensus 337 ~~~~~~~~a~~~~~~~~~~ 355 (423)
+..|++..|+++.+...+.
T Consensus 63 ~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred HhcccHHHHHHHHHHHHHH
Confidence 5556666666555555553
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.64 Score=38.34 Aligned_cols=193 Identities=18% Similarity=0.126 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhccCC-----CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-H
Q 038550 195 VANSILDFYTRSGRIDLANKIFDCLP-----VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT-A 268 (423)
Q Consensus 195 ~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~ 268 (423)
.+......+...+.+..+...+.... ......+......+...+++..+...+.........+ ......... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 33444445555555555555544332 2233344444455555555666666666655533222 111112222 4
Q ss_pred HhccCcHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC--HhHHHHHHHHHHhcCChh
Q 038550 269 CSHGGLVEKGKKYFDEMQADSV--KPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD--ANIWGALLGACRIYGNVE 343 (423)
Q Consensus 269 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~--~~~~~~l~~~~~~~~~~~ 343 (423)
+...|+++.+...+.+...... ......+......+...++.+.+...+.+. ...++ ...+..+...+...++++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 5566666666666666643210 012222223333344556666666666555 22222 455555556666666666
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 344 LGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 344 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
.|...+.......|.....+..+...+...+.++++...+.+...
T Consensus 220 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 220 EALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666665444444444444455556666666655544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.045 Score=45.34 Aligned_cols=98 Identities=12% Similarity=0.096 Sum_probs=77.0
Q ss_pred HHhhcccC--CcChhhHHHHHHHHHhC-----CChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCC------------
Q 038550 12 SYLFHNIA--EKNIVSWNAMVANFAQN-----RLELKALQLVREMPIHNEFPNSVTLTNVLPACARGH------------ 72 (423)
Q Consensus 12 ~~~~~~~~--~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~------------ 72 (423)
...|+.++ ++|-.+|-..+..+... +.++-....++.|.+-|+.-|..+|+.|++.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34455555 46788888888877654 567777778889999999999999999999875532
Q ss_pred ----CCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCh
Q 038550 73 ----FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCL 109 (423)
Q Consensus 73 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 109 (423)
.-+-++.++++|...|+.||..+-..|++++.+.+-.
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2345788999999999999999999999998877653
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.18 Score=45.44 Aligned_cols=145 Identities=12% Similarity=0.069 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHhcc---------CcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 038550 239 EVDTAINLFEAMRED-GVGYD-PVSYIAILTACSHG---------GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA 307 (423)
Q Consensus 239 ~~~~a~~~~~~m~~~-~~~p~-~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 307 (423)
..+.|..+|.+.... ...|+ ...|..+..++... ....+|.++-++..+.+ +-|......+..++.-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 355677777777621 23444 34454444443221 23445666666666654 45666666666666777
Q ss_pred CChHHHHHHHhhC-CCCCCH-hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHH--HHHHHHHhcCChhHHHHHH
Q 038550 308 GLMEDAVKLIKNL-PVEPDA-NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI--LLSNMYAEAGKWDEASKVR 383 (423)
Q Consensus 308 ~~~~~a~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~A~~~~ 383 (423)
++++.|...|++. .+.||. .+|......+.-.|+.++|.+.++++.++.|....+-. ..+..|+..+ .++|+.+|
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 7788888888877 556643 34555555566778888888888888888877554422 3333555444 45666665
Q ss_pred HH
Q 038550 384 EL 385 (423)
Q Consensus 384 ~~ 385 (423)
-+
T Consensus 431 ~~ 432 (458)
T PRK11906 431 YK 432 (458)
T ss_pred hh
Confidence 43
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.28 Score=40.85 Aligned_cols=93 Identities=20% Similarity=0.250 Sum_probs=46.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc-CCCC-ChhhHHHHHH
Q 038550 227 WNTLILGYGMLGEVDTAINLFEAMREDGVG--YDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKP-TEMHYACMVD 302 (423)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~ 302 (423)
|+.-+..+ +.|++..|...|....+.... -....+-.|..++...|+++.|..+|..+.+. +-.| -+..+-.|..
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 44444433 444566666666555554211 12234455555555666666666555555554 1111 1234445555
Q ss_pred HHHhcCChHHHHHHHhhC
Q 038550 303 LLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~ 320 (423)
+..+.|+.++|...|+++
T Consensus 224 ~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 224 SLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHhcCHHHHHHHHHHH
Confidence 555556666665555554
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.96 E-value=2.4 Score=46.25 Aligned_cols=316 Identities=11% Similarity=-0.002 Sum_probs=173.7
Q ss_pred HHHHHhhcCCCCccHHHHHHHHHHcCC--CCchHHHHHHHHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChh
Q 038550 63 NVLPACARGHFLRPGKEIHARIIRKGL--NFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCS 140 (423)
Q Consensus 63 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 140 (423)
.+..+-.+.+.+..|...++.-..... .-....|-.+...|...+++|...-+......+.. ...-|......|++.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s-l~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS-LYQQILEHEASGNWA 1466 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc-HHHHHHHHHhhccHH
Confidence 334455567778888888777311100 11223445555689999998887777643222222 333455667789999
Q ss_pred hHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC
Q 038550 141 ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220 (423)
Q Consensus 141 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 220 (423)
.|...|+++.+.+ ++...+++-++......+.+..+....+-......+-....++.-+.+--+.++++.......
T Consensus 1467 da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~--- 1542 (2382)
T KOG0890|consen 1467 DAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS--- 1542 (2382)
T ss_pred HHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh---
Confidence 9999999999875 455778888888887888887777755554443333333333444455577888887777665
Q ss_pred CCChhhHHHH--HHHHhcc--CCHHHHHHHHHHHHHcCCCC---------CHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038550 221 VKDSASWNTL--ILGYGML--GEVDTAINLFEAMREDGVGY---------DPVSYIAILTACSHGGLVEKGKKYFDEMQA 287 (423)
Q Consensus 221 ~~~~~~~~~l--i~~~~~~--g~~~~a~~~~~~m~~~~~~p---------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 287 (423)
..+..+|... ...+.+. .+.-.-...++-+++.-+.| -...|..++....-. +-....+...
T Consensus 1543 ~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~----el~~~~~~l~- 1617 (2382)
T KOG0890|consen 1543 DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL----ELENSIEELK- 1617 (2382)
T ss_pred cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH----HHHHHHHHhh-
Confidence 3444455443 2222222 22222222333333321111 011222222221111 0011111111
Q ss_pred cCCCCChhh------HHHHH---HHHHhcCChHHHHH-HHhh--CC--C-CCCHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 288 DSVKPTEMH------YACMV---DLLGRAGLMEDAVK-LIKN--LP--V-EPDANIWGALLGACRIYGNVELGAWAAEHL 352 (423)
Q Consensus 288 ~~~~~~~~~------~~~l~---~~~~~~~~~~~a~~-~~~~--~~--~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 352 (423)
++.++..+ |..-+ +.+.+..++=-|.+ .+.. |. . ..-..+|....+.....|.++.|...+-.+
T Consensus 1618 -~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A 1696 (2382)
T KOG0890|consen 1618 -KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNA 1696 (2382)
T ss_pred -ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhh
Confidence 22222211 11111 11222111111111 0111 11 1 123567888889999999999999988888
Q ss_pred HhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 353 FMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 353 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
.+..+ +.++...+..+...|+...|+.++++-.+...
T Consensus 1697 ~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1697 KESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred hhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 77773 56788888899999999999999999887654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.95 Score=43.78 Aligned_cols=175 Identities=13% Similarity=0.050 Sum_probs=111.2
Q ss_pred HHHHHHHHHhcCChHHHHHHhchhcCCcchH----HHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhH
Q 038550 96 TNALTDMYAKCGCLNLAQNVFNISFRDEVSY----NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL 171 (423)
Q Consensus 96 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 171 (423)
...-++.+.+...++-|..+-+...-+..+. .....-+.+.|++++|...|-+-... +.|+ .++.-+...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence 3455667777788888888773333333333 33345556789999999888766542 2332 345566777
Q ss_pred hhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCCh-hhHHHHHHHHhccCCHHHHHHHHHHH
Q 038550 172 AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDS-ASWNTLILGYGMLGEVDTAINLFEAM 250 (423)
Q Consensus 172 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m 250 (423)
.++.+-..+++.+.+.|...... -..|+.+|.+.++.++-.++.+...+... .-....+..+.+.+-.+.|..+-...
T Consensus 411 q~IknLt~YLe~L~~~gla~~dh-ttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLANSDH-TTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHHHHcccccchh-HHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 78888888899999888755443 36789999999999998888877662211 11344555566666666665554443
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 038550 251 REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285 (423)
Q Consensus 251 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 285 (423)
.. +......++ -..+++++|.+++..+
T Consensus 490 ~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 490 KK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred cc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 32 333334333 4567788888877664
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.86 Score=37.73 Aligned_cols=56 Identities=18% Similarity=0.124 Sum_probs=44.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcch---HHHHHHHHHhcCChhHHHHHHHHHH
Q 038550 332 LLGACRIYGNVELGAWAAEHLFMLKPQHCGY---YILLSNMYAEAGKWDEASKVRELMK 387 (423)
Q Consensus 332 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~ 387 (423)
+.+.|.+.|.+..|..-++++.+.-|....+ +..+..+|...|..++|...-+-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 3467889999999999999999987665544 5567788999999999988755443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.71 Score=40.09 Aligned_cols=51 Identities=10% Similarity=-0.076 Sum_probs=23.4
Q ss_pred HHHHHHhcCCHHHHHHHhccCC-------CC--ChhhHHHHHHHHhccCCHHHHHHHHHH
Q 038550 199 ILDFYTRSGRIDLANKIFDCLP-------VK--DSASWNTLILGYGMLGEVDTAINLFEA 249 (423)
Q Consensus 199 l~~~~~~~~~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~a~~~~~~ 249 (423)
+..++...+.++++++.|+... .+ ...++-.|...|.+..|+++|.-+..+
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~k 187 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCK 187 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHh
Confidence 4444444455555555554322 11 123444555555555555555544444
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.95 Score=41.01 Aligned_cols=140 Identities=14% Similarity=0.031 Sum_probs=79.8
Q ss_pred HHHHHHHhccCC---CCC---hhhHHHHHHHHhc---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 038550 209 IDLANKIFDCLP---VKD---SASWNTLILGYGM---------LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG 273 (423)
Q Consensus 209 ~~~A~~~~~~~~---~~~---~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 273 (423)
.+.|..+|.+.. +-| ...|..+..++.. .....+|.++.+...+.+. -|+.....+..++...+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-VDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhc
Confidence 456777777665 333 3444444433322 1234456666666666543 36667777766667777
Q ss_pred cHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHhh-CCCCCCH---hHHHHHHHHHHhcCChhHHHHH
Q 038550 274 LVEKGKKYFDEMQADSVKPT-EMHYACMVDLLGRAGLMEDAVKLIKN-LPVEPDA---NIWGALLGACRIYGNVELGAWA 348 (423)
Q Consensus 274 ~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~ 348 (423)
+++.|...|++.... .|| ..+|......+.-+|+.++|.+.+++ +...|.. .+....+..|+.. ..+.|+++
T Consensus 353 ~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 353 QAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred chhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 788888888887775 343 34444444445567888888888877 4555532 2333333445443 45566666
Q ss_pred HHHH
Q 038550 349 AEHL 352 (423)
Q Consensus 349 ~~~~ 352 (423)
|-+-
T Consensus 430 ~~~~ 433 (458)
T PRK11906 430 YYKE 433 (458)
T ss_pred Hhhc
Confidence 5443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.32 Score=42.13 Aligned_cols=222 Identities=10% Similarity=-0.017 Sum_probs=104.0
Q ss_pred HhcCCChhhHHHHHHHHHhcC--CCCchhhHHHHHHHHHhHhhHHhhhHHHH----HHHHh-ccCcchHHHHHHHHHHHh
Q 038550 133 YSQTSDCSESLSLFSEMRLLG--MKHDVVSFMGAISACANLAAIKQGKEIHG----VTIRK-HLHTHLFVANSILDFYTR 205 (423)
Q Consensus 133 ~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~----~~~~~-~~~~~~~~~~~l~~~~~~ 205 (423)
+....+.++|+..|.+-+.+- ..---.+|..+..+.++.|.++++...-- ...+. ....-...|..+..++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888887766531 11122366667777777777777655421 11111 001112223333334444
Q ss_pred cCCHHHHHHHhccCC------C--CChhhHHHHHHHHhccCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHhcc
Q 038550 206 SGRIDLANKIFDCLP------V--KDSASWNTLILGYGMLGEVDTAINLFEAMREDG-----VGYDPVSYIAILTACSHG 272 (423)
Q Consensus 206 ~~~~~~A~~~~~~~~------~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~ 272 (423)
.-++.+++.+-..-. + .......++..++...+.++++++.|+...+.- .......+..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 344444443332111 1 011223344555555566666666666654321 111223566666666666
Q ss_pred CcHHHHHHHHHHHHHc----CCCCChhhHHHH-----HHHHHhcCChHHHHHHHhhC-------CCCC-CHhHHHHHHHH
Q 038550 273 GLVEKGKKYFDEMQAD----SVKPTEMHYACM-----VDLLGRAGLMEDAVKLIKNL-------PVEP-DANIWGALLGA 335 (423)
Q Consensus 273 ~~~~~a~~~~~~~~~~----~~~~~~~~~~~l-----~~~~~~~~~~~~a~~~~~~~-------~~~~-~~~~~~~l~~~ 335 (423)
.++++|.-+..+..+. ++..-..-|..+ .-++...|..-+|.+.-++. |..+ -......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 6666666555554432 222112222222 22333445544444443332 3222 22334445556
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 038550 336 CRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 336 ~~~~~~~~~a~~~~~~~~~ 354 (423)
|...|+.+.|..-|+.+..
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 6666666666665555544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.048 Score=47.74 Aligned_cols=107 Identities=12% Similarity=0.022 Sum_probs=79.3
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHH
Q 038550 266 LTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELG 345 (423)
Q Consensus 266 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 345 (423)
.+.|.+.|++..|..-|++.... +. |.+.-+.++.... . ..-..+++.|.-++.+.+++..|
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~-l~------------~~~~~~~ee~~~~-~----~~k~~~~lNlA~c~lKl~~~~~A 276 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF-LE------------YRRSFDEEEQKKA-E----ALKLACHLNLAACYLKLKEYKEA 276 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH-hh------------ccccCCHHHHHHH-H----HHHHHHhhHHHHHHHhhhhHHHH
Confidence 46677888888888888776653 00 0111111211111 1 11234667788889999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 346 AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 346 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
+....++++.+|.|..+...-+.+|...|.++.|+..|+++.+..
T Consensus 277 i~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 277 IESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999998743
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.72 E-value=1.5 Score=39.48 Aligned_cols=345 Identities=10% Similarity=-0.025 Sum_probs=172.8
Q ss_pred ccCCcchhHHhhcccCC------------------cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCC----CCchhH
Q 038550 4 KSSRPAEASYLFHNIAE------------------KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEF----PNSVTL 61 (423)
Q Consensus 4 ~~g~~~~A~~~~~~~~~------------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~----p~~~~~ 61 (423)
+.|.++.|...|..-.. +|...=+..++++...|++.++..++++|...=.+ -+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 45677777766644321 12223355677888999999999999998765333 678888
Q ss_pred HHHHHHhhc--------CCCCccHHHHHHHHH-------Hc------CCCCchHHHHHHHHHHHhcC--C---hHHHHHH
Q 038550 62 TNVLPACAR--------GHFLRPGKEIHARII-------RK------GLNFDLFLTNALTDMYAKCG--C---LNLAQNV 115 (423)
Q Consensus 62 ~~l~~~~~~--------~~~~~~a~~~~~~~~-------~~------~~~~~~~~~~~l~~~~~~~g--~---~~~a~~~ 115 (423)
+.++-.+.+ ....+-....++.++ .. .+.|.......++....-.. + +-.+.+.
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 886555443 122222222222221 11 11222222333332221110 0 1111111
Q ss_pred hc--hhcC-CcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCC----chhhHHHHHHHHHhHhhHHhhhHHHHHHHHhc
Q 038550 116 FN--ISFR-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH----DVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188 (423)
Q Consensus 116 ~~--~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 188 (423)
++ -..| .......|...+.+ +.+++..+.+.+....+.+ =..+|..++....+.++...|.+.+..+....
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD 328 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 10 0111 11222333333333 4555555555443322111 23477888888888888888888877665533
Q ss_pred cCcchH-----HHHHHHHHHHh----cCCHHHHHHHhccCCCCChhh---HHHHH---HHHhccCC-HHHHHHHHHHHHH
Q 038550 189 LHTHLF-----VANSILDFYTR----SGRIDLANKIFDCLPVKDSAS---WNTLI---LGYGMLGE-VDTAINLFEAMRE 252 (423)
Q Consensus 189 ~~~~~~-----~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~---~~~li---~~~~~~g~-~~~a~~~~~~m~~ 252 (423)
+..... .-..+-+..+. .-+..+-+.+|+.+...|+.. -..|+ .-+-+.|. -++|+++++.+.+
T Consensus 329 p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 329 PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 221110 00112222221 112233344444444333211 11122 23444555 7788888888876
Q ss_pred cCCCC-CHHHHH----HHHHHHhc---cCcHHHHHHHHHHHHHcCCCCChhh----HHHHHHH--HHhcCChHHHHHHHh
Q 038550 253 DGVGY-DPVSYI----AILTACSH---GGLVEKGKKYFDEMQADSVKPTEMH----YACMVDL--LGRAGLMEDAVKLIK 318 (423)
Q Consensus 253 ~~~~p-~~~~~~----~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~--~~~~~~~~~a~~~~~ 318 (423)
- .| |...-+ .+=.+|.. ...+.+-..+-+-+.+.|++|-... -|.|.++ +...|++.++.-.=.
T Consensus 409 f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~ 486 (549)
T PF07079_consen 409 F--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSS 486 (549)
T ss_pred h--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4 22 222222 22222322 2344555555555566687765433 3333322 346788888765433
Q ss_pred hC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 319 NL-PVEPDANIWGALLGACRIYGNVELGAWAAEHL 352 (423)
Q Consensus 319 ~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 352 (423)
-+ .+.|++.+|..+.-.+....++++|..++..+
T Consensus 487 WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 487 WLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 22 56788888888888888888888888777653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.036 Score=29.78 Aligned_cols=32 Identities=19% Similarity=0.105 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 038550 327 NIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358 (423)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 358 (423)
.+|..+...+...|++++|+..++++++++|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35566666777777777777777777777665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=95.42 E-value=2.8 Score=40.70 Aligned_cols=61 Identities=16% Similarity=-0.076 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCC-------ccHHHHHHHHHHc
Q 038550 26 WNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFL-------RPGKEIHARIIRK 87 (423)
Q Consensus 26 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~-------~~a~~~~~~~~~~ 87 (423)
-=.+|-.|.+.|++++|.++.+..... .......+...+..+....+- +....-|++..+.
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 346777889999999999999655543 445566777888887765332 2444455555544
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.055 Score=28.99 Aligned_cols=31 Identities=29% Similarity=0.225 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 038550 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358 (423)
Q Consensus 328 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 358 (423)
.|..+...+...|++++|++.++++.++.|.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3445556666666666666666666666665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.41 E-value=2.3 Score=39.66 Aligned_cols=361 Identities=12% Similarity=0.033 Sum_probs=196.8
Q ss_pred hHHhhcccCC--cChh-hHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhh-cCCCCccHHHHHHHHHH
Q 038550 11 ASYLFHNIAE--KNIV-SWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACA-RGHFLRPGKEIHARIIR 86 (423)
Q Consensus 11 A~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 86 (423)
+..+++.+.. |... -|......=.+.|..+.+.++|++..+ |++.+...|...+..+. ..|+.+.....|+..+.
T Consensus 64 ~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~ 142 (577)
T KOG1258|consen 64 LREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKS 142 (577)
T ss_pred HHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 3444444442 5444 344555555667777888888887775 46666666666655543 35566666666666654
Q ss_pred c-CCC-CchHHHHHHHHHHHhcCChHHHHHHh-chhcCCcchHHHHHHHH---hcC------CChhhHHHHHHHH-----
Q 038550 87 K-GLN-FDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGY---SQT------SDCSESLSLFSEM----- 149 (423)
Q Consensus 87 ~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~l~~~~---~~~------~~~~~a~~~~~~m----- 149 (423)
. |.. .....|...+.--..++++.....++ +...-....|+..-.-| ... ...+.+.++-...
T Consensus 143 ~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~ 222 (577)
T KOG1258|consen 143 YVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSK 222 (577)
T ss_pred hcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhh
Confidence 3 222 23445666666666666676666666 22211111111111111 111 1112222111111
Q ss_pred ---------------HhcCCCCchhh--HHHHHHHHHhH-------hhHHhhhHHHHHHHHhc-------cCcchHHHHH
Q 038550 150 ---------------RLLGMKHDVVS--FMGAISACANL-------AAIKQGKEIHGVTIRKH-------LHTHLFVANS 198 (423)
Q Consensus 150 ---------------~~~~~~~~~~~--~~~ll~~~~~~-------~~~~~a~~~~~~~~~~~-------~~~~~~~~~~ 198 (423)
...+-+.+..+ .+.+...+... .......-.++.-.+.- ..++..+|..
T Consensus 223 ~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~ 302 (577)
T KOG1258|consen 223 ITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRY 302 (577)
T ss_pred cccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHH
Confidence 11111111111 11111111111 11111112222222211 1335667788
Q ss_pred HHHHHHhcCCHHHHHHHhccCCCC---ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 038550 199 ILDFYTRSGRIDLANKIFDCLPVK---DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLV 275 (423)
Q Consensus 199 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 275 (423)
.+......|+.+.+.-+|++..-| =...|--.+.-....|+.+-|..++....+-.++-.+.+-..-..-+-..|++
T Consensus 303 yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~ 382 (577)
T KOG1258|consen 303 YLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNF 382 (577)
T ss_pred HhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccH
Confidence 888888999999999999988754 23445555555555699999988888776654432222221112224557899
Q ss_pred HHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChHHHH---HHHhhC-CCCCCHhHHHHHHH-----HHHhcCChhHH
Q 038550 276 EKGKKYFDEMQADSVKPTEM-HYACMVDLLGRAGLMEDAV---KLIKNL-PVEPDANIWGALLG-----ACRIYGNVELG 345 (423)
Q Consensus 276 ~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~---~~~~~~-~~~~~~~~~~~l~~-----~~~~~~~~~~a 345 (423)
+.|..+++.+... . |+.. .-..-+....+.|..+.+. +++... ...-+..+...+.- .+.-.++.+.|
T Consensus 383 ~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a 460 (577)
T KOG1258|consen 383 DDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLA 460 (577)
T ss_pred HHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999886 2 4422 2222344556788888887 555444 22333333333332 24556889999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 038550 346 AWAAEHLFMLKPQHCGYYILLSNMYAEAG 374 (423)
Q Consensus 346 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 374 (423)
..++.++.+..|++...|..++......+
T Consensus 461 ~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 461 RIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 99999999999999999998888776655
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.82 Score=34.22 Aligned_cols=116 Identities=16% Similarity=0.062 Sum_probs=72.3
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038550 231 ILGYGMLGEVDTAINLFEAMREDGV--GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG 308 (423)
Q Consensus 231 i~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 308 (423)
.....+.|++++|.+.|+.+...-. +-.......++.+|.+.++++.|...+++.++........-|...+.+++.-.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 3444577888888888888877521 11345667778888888888888888888888743333345666666665544
Q ss_pred ChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc
Q 038550 309 LMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG 361 (423)
Q Consensus 309 ~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 361 (423)
..+..+.-+- +.+.| .+....|...|+++++.-|++..
T Consensus 97 ~~~~~~~~~~--~~drD-------------~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 97 QDEGSLQSFF--RSDRD-------------PTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HhhhHHhhhc--ccccC-------------cHHHHHHHHHHHHHHHHCcCChh
Confidence 4332222211 21222 22245777778888888887643
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.1 Score=44.01 Aligned_cols=59 Identities=22% Similarity=0.202 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 038550 329 WGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387 (423)
Q Consensus 329 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 387 (423)
+..++..+...|+.+.+...+++....+|-+...|..++.+|.+.|+...|+..|+++.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 33444444455555555555555555555555555555555555555555555555443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.87 Score=33.35 Aligned_cols=137 Identities=9% Similarity=0.108 Sum_probs=75.1
Q ss_pred hcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHH---HHHHHHHHhcCCHH
Q 038550 134 SQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA---NSILDFYTRSGRID 210 (423)
Q Consensus 134 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~ 210 (423)
.-.|.+++..+++.+.... .+..-++-+|.-....-+-+- +++.+.+.|--.|.... ..++.+|...|.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~y---vv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~-- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDY---VVETLDSIGKIFDISKCGNLKRVIECYAKRNK-- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHH---HHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhH---HHHHHHHHhhhcCchhhcchHHHHHHHHHhcc--
Confidence 3456677777777776653 233344444433332223333 33333333333333222 234455554443
Q ss_pred HHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 038550 211 LANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290 (423)
Q Consensus 211 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 290 (423)
+.......+..+...|+-++-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 2334455677788888888888888887753 356888888888999999999999999999888875
Q ss_pred C
Q 038550 291 K 291 (423)
Q Consensus 291 ~ 291 (423)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 3
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.46 Score=42.45 Aligned_cols=132 Identities=17% Similarity=0.147 Sum_probs=103.2
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDG-VGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLL 304 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (423)
+|-..+..-.+....+.|..+|-+..+.| +.++...+++++..++. |+...|..+|+.-... ++.+..--+..+..+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-CCCchHHHHHHHHHH
Confidence 45566777777788999999999999998 67788899999987665 7788899999876654 333333345566777
Q ss_pred HhcCChHHHHHHHhhC--CCCCC--HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 038550 305 GRAGLMEDAVKLIKNL--PVEPD--ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359 (423)
Q Consensus 305 ~~~~~~~~a~~~~~~~--~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 359 (423)
.+.++-+.|..+|+.. .+..+ ..+|..+|.--..-|+...+..+-+++.+.-|..
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 8899999999999965 22223 6789999999899999999999999998888764
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.56 Score=34.22 Aligned_cols=88 Identities=15% Similarity=0.066 Sum_probs=62.7
Q ss_pred HHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCch---hhHHHHHHHHHhHhhH
Q 038550 102 MYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV---VSFMGAISACANLAAI 174 (423)
Q Consensus 102 ~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~ 174 (423)
+++..|+++.|++.| ...+.....||.-..++.-.|+.++|++-+++..+..-.-.. ..|.--...|...|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 467788888888888 455678888999999999999999999888888764322222 2333333445566777
Q ss_pred HhhhHHHHHHHHhcc
Q 038550 175 KQGKEIHGVTIRKHL 189 (423)
Q Consensus 175 ~~a~~~~~~~~~~~~ 189 (423)
+.|..-|+...+.|.
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888887777766653
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.00 E-value=4.7 Score=40.99 Aligned_cols=25 Identities=20% Similarity=0.485 Sum_probs=15.1
Q ss_pred HHHHHHHhcCC--ChhhHHHHHHHHHh
Q 038550 127 NILIVGYSQTS--DCSESLSLFSEMRL 151 (423)
Q Consensus 127 ~~l~~~~~~~~--~~~~a~~~~~~m~~ 151 (423)
-.+|.+|.+.+ .++.++..+.+...
T Consensus 794 ~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 794 LFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 34566666666 56666666666554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.95 E-value=1.2 Score=44.95 Aligned_cols=80 Identities=16% Similarity=0.083 Sum_probs=46.3
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCCHhH--HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH
Q 038550 301 VDLLGRAGLMEDAVKLIKNLPVEPDANI--WGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDE 378 (423)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 378 (423)
+.+|..+|++.+|+.+-.++...-+... -..|..-+...++.-+|-++..+..+. ....+..|++...|++
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-------~~~av~ll~ka~~~~e 1044 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-------PEEAVALLCKAKEWEE 1044 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-------HHHHHHHHhhHhHHHH
Confidence 4555555666666666555532223222 245666667777777777666665432 2233445777788888
Q ss_pred HHHHHHHHH
Q 038550 379 ASKVRELMK 387 (423)
Q Consensus 379 A~~~~~~m~ 387 (423)
|.++...-.
T Consensus 1045 Alrva~~~~ 1053 (1265)
T KOG1920|consen 1045 ALRVASKAK 1053 (1265)
T ss_pred HHHHHHhcc
Confidence 887765544
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.19 Score=38.61 Aligned_cols=134 Identities=11% Similarity=-0.032 Sum_probs=83.9
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCch-hHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchH-HHHHH
Q 038550 22 NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV-TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLF-LTNAL 99 (423)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 99 (423)
+-..|..-+. +.+.+..++|+.-|..+.+.|..--+. ..-.......+.|+...|...|+++-.....|-.. -...|
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 4445555554 466778899999999988876431111 11122334678899999999999887654333322 11111
Q ss_pred --HHHHHhcCChHHHHHHhchhcCCcc-----hHHHHHHHHhcCCChhhHHHHHHHHHhcCCCC
Q 038550 100 --TDMYAKCGCLNLAQNVFNISFRDEV-----SYNILIVGYSQTSDCSESLSLFSEMRLLGMKH 156 (423)
Q Consensus 100 --~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 156 (423)
.-.+...|.+++.....+-...+.. .-..|.-+-.+.|++.+|.+.|..+......|
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 2235677888888777733332222 33456677788999999999999887654444
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.92 E-value=1.3 Score=34.28 Aligned_cols=134 Identities=13% Similarity=-0.004 Sum_probs=68.5
Q ss_pred HHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh-chhcC
Q 038550 43 LQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFR 121 (423)
Q Consensus 43 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~ 121 (423)
.+.++.+.+.+++|+...+..++..+.+.|.+.. +..++..++-+|.......+-.+ .+....+.++= +|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH
Confidence 3445555566777777777777777777776443 33344444444444333222111 12223333332 44444
Q ss_pred CcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHH
Q 038550 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR 186 (423)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 186 (423)
=...+..++..+...|++-+|++..+..... +......++.+..+.+|...-..+++....
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3345666677777777777777777664221 112223445555555554444444444333
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.031 Score=32.31 Aligned_cols=40 Identities=18% Similarity=0.291 Sum_probs=32.2
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCCCCcccc
Q 038550 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQ 401 (423)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 401 (423)
|.++..++..|.+.|++++|++++++..+.. |+....|..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~--P~~~~a~~~ 40 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALD--PDDPEAWRA 40 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCCHHHHHH
Confidence 4578899999999999999999999998864 555444443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.86 Score=41.94 Aligned_cols=157 Identities=13% Similarity=-0.013 Sum_probs=96.9
Q ss_pred HHHHhcCCHHHHHHHhc--cCC-CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH
Q 038550 201 DFYTRSGRIDLANKIFD--CLP-VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEK 277 (423)
Q Consensus 201 ~~~~~~~~~~~A~~~~~--~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 277 (423)
....-.++++.+.++.+ .+. .-+....+.++.-+-+.|.++.|+.+.. |+.+- .....+.|+++.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~~r---FeLAl~lg~L~~ 336 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVT---------DPDHR---FELALQLGNLDI 336 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHHH---HHHHHHCT-HHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChHHH---hHHHHhcCCHHH
Confidence 34455678888544443 111 1124457777777888888888887744 32221 233456788888
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 038550 278 GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357 (423)
Q Consensus 278 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 357 (423)
|.++.++ ..+...|..|.....+.|+++-|++.|++.+ -+..|+-.|...|+.+.-.++.+.+...+-
T Consensus 337 A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 337 ALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 7765433 3466789999999999999999999999885 456666677888888877777776665443
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 358 QHCGYYILLSNMYAEAGKWDEASKVRELM 386 (423)
Q Consensus 358 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 386 (423)
++....++.-.|+.++..+++.+-
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 333444556679998888887653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.85 E-value=2.8 Score=37.53 Aligned_cols=147 Identities=10% Similarity=-0.015 Sum_probs=82.2
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC--hhhH
Q 038550 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY---DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT--EMHY 297 (423)
Q Consensus 223 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 297 (423)
...+|..+...+.+.|.++.|...+..+...+... .+.....-+..+-..|+..+|...++......+..+ ....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 45678888888889999999999888887754211 233444445566777888889888888877322211 1111
Q ss_pred HHHHHHHHhcCChHHHHHH-HhhCCCCCCHhHHHHHHHHHHhc------CChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 038550 298 ACMVDLLGRAGLMEDAVKL-IKNLPVEPDANIWGALLGACRIY------GNVELGAWAAEHLFMLKPQHCGYYILLSNMY 370 (423)
Q Consensus 298 ~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 370 (423)
..+...+.. ..+..... ........-...+..+....... ++.+++...|+.+.+..|.....|..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111111100 00000000 00000000112233333333333 7888899999999999988888887777665
Q ss_pred H
Q 038550 371 A 371 (423)
Q Consensus 371 ~ 371 (423)
.
T Consensus 303 ~ 303 (352)
T PF02259_consen 303 D 303 (352)
T ss_pred H
Confidence 4
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.84 E-value=1 Score=41.07 Aligned_cols=57 Identities=12% Similarity=0.039 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCC--CcchHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 330 GALLGACRIYGNVELGAWAAEHLFMLKPQ--HCGYYILLSNMYAEAGKWDEASKVRELM 386 (423)
Q Consensus 330 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m 386 (423)
..|..++.+.|+.++|++.++++.+..|. +..+...|+.++...+++.++..++.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 33444555556666666666665554432 2334555556666666666666555554
|
The molecular function of this protein is uncertain. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.45 Score=40.77 Aligned_cols=116 Identities=11% Similarity=0.034 Sum_probs=93.0
Q ss_pred hccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC--CCCCCHh----HHHHHHHHHHhcCChh
Q 038550 270 SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL--PVEPDAN----IWGALLGACRIYGNVE 343 (423)
Q Consensus 270 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~----~~~~l~~~~~~~~~~~ 343 (423)
-..|++.+|-..++++.+. .|.|...+...=.+|.-.|+.+.-...++++ ...||.. ....+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 4567888888889998876 5777777877788899999988888888887 3355543 3333445567889999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 344 LGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386 (423)
Q Consensus 344 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 386 (423)
+|++..+++.+++|.+.-+..+.+..+.-.|++.++.+.+.+-
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 9999999999999999888888999999999999999887653
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.13 Score=40.43 Aligned_cols=123 Identities=12% Similarity=0.090 Sum_probs=78.8
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC-HhHHHHHHHHHHhc
Q 038550 267 TACSHGGLVEKGKKYFDEMQADSVKPTE-----MHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD-ANIWGALLGACRIY 339 (423)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~ 339 (423)
.-+...|++++|..-|.+.+.. +++.. ..|..-..++.+.+.++.|++--.+. .+.|. ......-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 4478899999999999999886 33332 23333345667888888888766555 45552 23333334678888
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH--HHHHHHHHHhcc
Q 038550 340 GNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDE--ASKVRELMKSRE 390 (423)
Q Consensus 340 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~--A~~~~~~m~~~~ 390 (423)
..+++|+.-|.++.+.+|....+....++.=-....-.+ -.+++.+++..|
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlG 234 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLG 234 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999876655554443222222222 223455555555
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.73 E-value=3.7 Score=38.40 Aligned_cols=154 Identities=15% Similarity=0.093 Sum_probs=79.4
Q ss_pred HHHHHHHhCCChHHHHHHHhhchhCC-CCCC-----chhHHHHHHHhhc----CCCCccHHHHHHHHHHcCCCCchHHHH
Q 038550 28 AMVANFAQNRLELKALQLVREMPIHN-EFPN-----SVTLTNVLPACAR----GHFLRPGKEIHARIIRKGLNFDLFLTN 97 (423)
Q Consensus 28 ~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~-----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (423)
.+++...=.|+-+.+++.+.+..+.+ +.-. .-.|+.++..++. ..+.+.+.+++..+.+. -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 34444555677777777776654432 1100 0123333333322 33456667777777655 45544443
Q ss_pred HH-HHHHHhcCChHHHHHHhchhcC--------CcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 038550 98 AL-TDMYAKCGCLNLAQNVFNISFR--------DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISAC 168 (423)
Q Consensus 98 ~l-~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 168 (423)
.. ...+...|++++|++.|+.... ....+-.+..++.-..+|++|...|..+.+.. ..+..+|..+..+|
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 22 3445566777777777732111 12234445556666777777777777776643 34444554444333
Q ss_pred -HhHhhH-------HhhhHHHHHH
Q 038550 169 -ANLAAI-------KQGKEIHGVT 184 (423)
Q Consensus 169 -~~~~~~-------~~a~~~~~~~ 184 (423)
...++. ++|..++.++
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHH
Confidence 234444 5555555544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.69 E-value=2.1 Score=35.49 Aligned_cols=72 Identities=10% Similarity=-0.112 Sum_probs=40.8
Q ss_pred HHhcCCChhhHHHHHHHHHhcC--CCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHH
Q 038550 132 GYSQTSDCSESLSLFSEMRLLG--MKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFY 203 (423)
Q Consensus 132 ~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 203 (423)
.-.+.|++++|.+.|+.+..+. -+-...+...++.++.+.++++.|....++..+..+.....-|..-|.++
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 3345677777777777776542 11123344455556666777777777777666655444444444444443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.61 E-value=1.2 Score=34.36 Aligned_cols=129 Identities=20% Similarity=0.193 Sum_probs=67.0
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChh-hHHHHHH
Q 038550 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPV-SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM-HYACMVD 302 (423)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~ 302 (423)
..|..-++ +++.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|-.. -...|-.
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444443 355667777777777777766442221 12222333556677777777777766552222211 1111211
Q ss_pred --HHHhcCChHHHHHHHhhCC--CCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 303 --LLGRAGLMEDAVKLIKNLP--VEP-DANIWGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 303 --~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
.+...|.++......+-+. -.| -...-..|.-+-.+.|++..|.+.|.++..
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 2345666666666665551 112 223344455555666666666666666655
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.061 Score=29.45 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 038550 363 YILLSNMYAEAGKWDEASKVRELMK 387 (423)
Q Consensus 363 ~~~l~~~~~~~g~~~~A~~~~~~m~ 387 (423)
+..|+.+|.+.|++++|++++++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566677777777777777777644
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.45 E-value=2.8 Score=40.82 Aligned_cols=178 Identities=12% Similarity=0.095 Sum_probs=81.7
Q ss_pred hHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcc--hHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhcc
Q 038550 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTH--LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML 237 (423)
Q Consensus 160 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 237 (423)
+...-+..+.+...++.|..+-+. .+..++ ........+.+.+.|++++|...|-+-..--.. ..+|.-|...
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLda 410 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDA 410 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCH
Confidence 344445555555555555554332 222221 112222334445566666666555433211000 1233444444
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 038550 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLI 317 (423)
Q Consensus 238 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 317 (423)
.+...-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+..- .|.. ..-....+..+.+.+-.++|..+-
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHH
Confidence 5555555566666666654 34444556666666666665555544433 2211 111233444455555555555554
Q ss_pred hhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHH
Q 038550 318 KNLPVEPDANIWGALLGACRIYGNVELGAWAAEH 351 (423)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 351 (423)
.+.+. +......++ -..+++++|++.++.
T Consensus 487 ~k~~~--he~vl~ill---e~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 487 TKFKK--HEWVLDILL---EDLHNYEEALRYISS 515 (933)
T ss_pred HHhcc--CHHHHHHHH---HHhcCHHHHHHHHhc
Confidence 44432 233333333 345666666665544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.40 E-value=3 Score=35.94 Aligned_cols=18 Identities=6% Similarity=-0.060 Sum_probs=11.0
Q ss_pred hcCCCCccHHHHHHHHHH
Q 038550 69 ARGHFLRPGKEIHARIIR 86 (423)
Q Consensus 69 ~~~~~~~~a~~~~~~~~~ 86 (423)
.+.|+.+.|..++.+...
T Consensus 4 ~~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhhCCHHHHHHHHHHhhh
Confidence 345666666666666654
|
It is also involved in sporulation []. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.19 E-value=2.7 Score=34.59 Aligned_cols=55 Identities=11% Similarity=0.167 Sum_probs=24.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHc-CC--CCChhhHHHHHHHHHhcCChHHHHHHH
Q 038550 262 YIAILTACSHGGLVEKGKKYFDEMQAD-SV--KPTEMHYACMVDLLGRAGLMEDAVKLI 317 (423)
Q Consensus 262 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~ 317 (423)
|...|-.+....++..|...++.-.+. ++ +-+..+...|+.+| ..|+.+++..++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 334444444455555555555553332 11 12334444444443 244555444443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.00 E-value=2.9 Score=34.26 Aligned_cols=125 Identities=18% Similarity=0.133 Sum_probs=84.2
Q ss_pred HHhccCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCC
Q 038550 233 GYGMLGEVDTAINLFEAMREDGV--GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP-TEMHYACMVDLLGRAGL 309 (423)
Q Consensus 233 ~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 309 (423)
.+...|+++.+...+.+...... ......+......+...++.+.+...+....... +. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 56677777888777777754211 1123334444444666778888888888887753 23 35667777778888888
Q ss_pred hHHHHHHHhhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 038550 310 MEDAVKLIKNL-PVEPD-ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358 (423)
Q Consensus 310 ~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 358 (423)
++.|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 88888888776 44444 444555555555677789999999998888876
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.97 E-value=5.5 Score=37.35 Aligned_cols=336 Identities=9% Similarity=0.008 Sum_probs=163.4
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCch-hHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHH
Q 038550 22 NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSV-TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALT 100 (423)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 100 (423)
+-..|..+|.---.....+.+..++..++.. .|-.. -|......=.+.|..+.+.++|++.+.. ++.+...|....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 3445666665555555556666666666643 24443 3444444445677788888888877643 455555555555
Q ss_pred HHHH-hcCChHHHHHHhch-------hcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhH-
Q 038550 101 DMYA-KCGCLNLAQNVFNI-------SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL- 171 (423)
Q Consensus 101 ~~~~-~~g~~~~a~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~- 171 (423)
.-+. ..|+.+.....|+. .-.+...|...|.--...+++.....+|++.++. |. ..|+..-..+.+.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~-~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PL-HQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hh-hHhHHHHHHHHHHH
Confidence 4433 33555555555521 1224556777777777777777888888777752 21 2222222222111
Q ss_pred --------hhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcC-CHHHHHHHhccCCCCCh---hhHHHH-------HH
Q 038550 172 --------AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG-RIDLANKIFDCLPVKDS---ASWNTL-------IL 232 (423)
Q Consensus 172 --------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~---~~~~~l-------i~ 232 (423)
-..+++.++-...... ..-...+ ..+.-....+....|.. ...+.+ -.
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~ 263 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAER-------------SKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEK 263 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhh-------------hhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHH
Confidence 1112222211111110 0000000 11111111111111110 001111 11
Q ss_pred HHhccCCHHHHHHHHHHHHHc---CCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038550 233 GYGMLGEVDTAINLFEAMRED---GVGY----DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305 (423)
Q Consensus 233 ~~~~~g~~~~a~~~~~~m~~~---~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (423)
.+............++.-... .++| +..+|...+.--...|+.+.+.-+|+...-- +..-...|-..+.-..
T Consensus 264 ~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~ 342 (577)
T KOG1258|consen 264 VYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWME 342 (577)
T ss_pred HHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHH
Confidence 122222222333333332221 1222 3356666676677777777777777776532 1122334444444445
Q ss_pred hcCChHHHHHHHhhC-----CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHH
Q 038550 306 RAGLMEDAVKLIKNL-----PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEAS 380 (423)
Q Consensus 306 ~~~~~~~a~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 380 (423)
..|+.+-|..++.+. +..|....+.+.+ .-..|++..|..+++...+.-|.....-..-+....+.|..+.+.
T Consensus 343 ~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 343 SSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 557777777666654 2233333333322 335677888888888877766665555555555666777777776
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.12 Score=28.30 Aligned_cols=27 Identities=19% Similarity=0.028 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 328 IWGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 328 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
+|..|...|.+.|++++|+.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466788888888888888888888554
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.90 E-value=2.4 Score=32.95 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=26.3
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh
Q 038550 79 EIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF 116 (423)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 116 (423)
++++.+.+.+++|+...+..+++.+.+.|++.....++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45556667777888888888888877777765554444
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.86 E-value=5.2 Score=36.72 Aligned_cols=61 Identities=11% Similarity=0.057 Sum_probs=42.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 038550 228 NTLILGYGMLGEVDTAINLFEAMREDGVG-YDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288 (423)
Q Consensus 228 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 288 (423)
..+..++-+.|+.++|++.+++|.+.... -.......|+.++...+.+.++..++.+.-+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 44556666778888888888888754222 12346677788888888888888888776543
|
The molecular function of this protein is uncertain. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.82 E-value=2.9 Score=33.72 Aligned_cols=162 Identities=17% Similarity=0.151 Sum_probs=86.9
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038550 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302 (423)
Q Consensus 223 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 302 (423)
-+.+||-+.--+...|+++.|.+.|+...+....-+-...|.-| ++.-.|++..|.+-+...-... +.| .|.+|--
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D-~~D--PfR~LWL 173 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDD-PND--PFRSLWL 173 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcC-CCC--hHHHHHH
Confidence 34677777777788888888888888887764332222222222 2445577777776666655542 111 1222221
Q ss_pred HHH-hcCChHHHHHHH-hhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-------cchHHHHHHHHHhc
Q 038550 303 LLG-RAGLMEDAVKLI-KNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH-------CGYYILLSNMYAEA 373 (423)
Q Consensus 303 ~~~-~~~~~~~a~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 373 (423)
-+. ..-++.+|..-+ ++.. ..|..-|...|-.|.-..-.+ ..+++++.....++ ..+|.-++..+...
T Consensus 174 Yl~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 174 YLNEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred HHHHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 111 233555665433 3332 334444444443332211111 12333333322222 34677778888888
Q ss_pred CChhHHHHHHHHHHhccc
Q 038550 374 GKWDEASKVRELMKSREA 391 (423)
Q Consensus 374 g~~~~A~~~~~~m~~~~~ 391 (423)
|+.++|..+|+-....++
T Consensus 251 G~~~~A~~LfKLaiannV 268 (297)
T COG4785 251 GDLDEATALFKLAVANNV 268 (297)
T ss_pred ccHHHHHHHHHHHHHHhH
Confidence 999999988887766544
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.68 Score=35.37 Aligned_cols=98 Identities=15% Similarity=0.042 Sum_probs=63.6
Q ss_pred hhHHHHHHHH---HhcCChHHHHHHHhhC-CCCCCHhHHHHH-HHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHH
Q 038550 295 MHYACMVDLL---GRAGLMEDAVKLIKNL-PVEPDANIWGAL-LGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNM 369 (423)
Q Consensus 295 ~~~~~l~~~~---~~~~~~~~a~~~~~~~-~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 369 (423)
.+.+.|+..+ .+.++.+++..++..+ -.+|.......+ ...+...|++.+|..+++.+.+..|..+..-..++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3445555444 5678999999999888 355644433332 2346789999999999999888888777666666666
Q ss_pred HHhcCChhHHHHHHHHHHhccccC
Q 038550 370 YAEAGKWDEASKVRELMKSREAKK 393 (423)
Q Consensus 370 ~~~~g~~~~A~~~~~~m~~~~~~~ 393 (423)
+...|+.+ =..+-.++.+.+..|
T Consensus 88 L~~~~D~~-Wr~~A~evle~~~d~ 110 (160)
T PF09613_consen 88 LYALGDPS-WRRYADEVLESGADP 110 (160)
T ss_pred HHHcCChH-HHHHHHHHHhcCCCh
Confidence 66666542 222334455555433
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.80 E-value=3.1 Score=33.97 Aligned_cols=136 Identities=13% Similarity=0.134 Sum_probs=68.0
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHc--CCCCChhhH
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMRED----G-VGYDPVSYIAILTACSHG-GLVEKGKKYFDEMQAD--SVKPTEMHY 297 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~--~~~~~~~~~ 297 (423)
+|.....+| +.+++.+|...++...+. | ++--...+..+...|... .++++|+..|+..-+- |-..+...-
T Consensus 76 ~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssAN 154 (288)
T KOG1586|consen 76 TYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSAN 154 (288)
T ss_pred HHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHH
Confidence 444444444 445888888887766542 1 111111223344445443 6677777777776654 322222222
Q ss_pred HHHH---HHHHhcCChHHHHHHHhhCC---CCCCHhHHHH---HHH-H--HHhcCChhHHHHHHHHHHhcCCCCcch
Q 038550 298 ACMV---DLLGRAGLMEDAVKLIKNLP---VEPDANIWGA---LLG-A--CRIYGNVELGAWAAEHLFMLKPQHCGY 362 (423)
Q Consensus 298 ~~l~---~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~---l~~-~--~~~~~~~~~a~~~~~~~~~~~p~~~~~ 362 (423)
-.++ ..-+..+++.+|+++|++.. ...+..-|.. ++. + +.-..|.-.+...+++..+..|.-..+
T Consensus 155 KC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 155 KCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 2222 22345677778888877661 1111111111 111 1 122356666777777777777764433
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.61 Score=35.00 Aligned_cols=80 Identities=16% Similarity=0.123 Sum_probs=51.8
Q ss_pred hhHHHHHHHH---HhcCChHHHHHHHhhC-CCCCC---HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 038550 295 MHYACMVDLL---GRAGLMEDAVKLIKNL-PVEPD---ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367 (423)
Q Consensus 295 ~~~~~l~~~~---~~~~~~~~a~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 367 (423)
.+.+.|+... ...++++++..+++.| -+.|+ ..++... .+...|++++|.++++.+.+..+..+..-..++
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A 85 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSAGAPPYGKALLA 85 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccCCCchHHHHHHH
Confidence 3444454443 3578888888888887 34453 3444443 356888999999999998887766555555555
Q ss_pred HHHHhcCCh
Q 038550 368 NMYAEAGKW 376 (423)
Q Consensus 368 ~~~~~~g~~ 376 (423)
.++.-.|+.
T Consensus 86 ~CL~al~Dp 94 (153)
T TIGR02561 86 LCLNAKGDA 94 (153)
T ss_pred HHHHhcCCh
Confidence 555555654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.85 Score=38.67 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=29.5
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 287 (423)
++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34444444555555555555555554432 12444555555555555555555555544443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.19 Score=26.80 Aligned_cols=30 Identities=20% Similarity=0.103 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 038550 328 IWGALLGACRIYGNVELGAWAAEHLFMLKP 357 (423)
Q Consensus 328 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 357 (423)
+|..+...|...|++++|...|+++.+..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344555566666666666666666666555
|
... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.25 E-value=5.9 Score=35.42 Aligned_cols=68 Identities=21% Similarity=0.230 Sum_probs=56.3
Q ss_pred CCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC----CCcchHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 324 PDANIWGALLGACRIYGNVELGAWAAEHLFMLKP----QHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
....+|..+...+.+.|.++.|...+.++....+ ..+.....-+..+...|+.++|+..++.......
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3566888999999999999999999999988652 2466677778889999999999999998887433
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.24 E-value=3.4 Score=32.72 Aligned_cols=128 Identities=10% Similarity=-0.014 Sum_probs=69.0
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHhccCcHHHHHHHHHHHHHcCCCCC----hhhHHH
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYI--AILTACSHGGLVEKGKKYFDEMQADSVKPT----EMHYAC 299 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ 299 (423)
.|..++.... .+.+ +.....+++.....+..-.++. .+...+...+++++|...++..... +-| ...--.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lR 131 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHH
Confidence 3444444432 3333 4445555555542121111222 2233466778888888877766643 111 112223
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCC-CCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 038550 300 MVDLLGRAGLMEDAVKLIKNLPVE-PDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357 (423)
Q Consensus 300 l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 357 (423)
|.+.....|.+++|+..++...-. -.......-...+...|+-++|...|+++.+..+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 445666778888888887765311 1222233334667778888888888888877763
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.14 E-value=3.7 Score=33.58 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=18.6
Q ss_pred HHhHhhHHhhhHHHHHHHHhccCcchH
Q 038550 168 CANLAAIKQGKEIHGVTIRKHLHTHLF 194 (423)
Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~~~~~~~~ 194 (423)
....+++.+|+.+|+++....+..+..
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 356678888888888887766554433
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.13 Score=39.18 Aligned_cols=85 Identities=19% Similarity=0.218 Sum_probs=49.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038550 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309 (423)
Q Consensus 230 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 309 (423)
++..+.+.+.+.....+++.+...+...+....+.++..|++.+..++...+++... + .-...+++.+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~-----yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--N-----YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--S-----S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc--c-----cCHHHHHHHHHhcch
Confidence 345555666777777777777765545566777777777777766666665555111 1 222344555566666
Q ss_pred hHHHHHHHhhCC
Q 038550 310 MEDAVKLIKNLP 321 (423)
Q Consensus 310 ~~~a~~~~~~~~ 321 (423)
+++|.-++.+++
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 666666666654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=92.86 E-value=10 Score=37.11 Aligned_cols=186 Identities=8% Similarity=-0.126 Sum_probs=92.4
Q ss_pred HHHHHHHhccCCCC--ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 038550 209 IDLANKIFDCLPVK--DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQ 286 (423)
Q Consensus 209 ~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 286 (423)
.+.|...++..... +.......+......++++.+...+..|.... .-...-.-.+..++...|+.++|..+|+.+.
T Consensus 295 ~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 295 TDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred CHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 33444444443321 33333333334445566666666655554321 1123333444455455566666666655542
Q ss_pred Hc------------CCCCC--------h------hhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcC
Q 038550 287 AD------------SVKPT--------E------MHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYG 340 (423)
Q Consensus 287 ~~------------~~~~~--------~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~ 340 (423)
.. |.+++ . ..-..-+..+...|....|...+..+....+......+.......|
T Consensus 374 ~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g 453 (644)
T PRK11619 374 QQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQ 453 (644)
T ss_pred cCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Confidence 21 11100 0 0011123445566777788777766633355556666666667788
Q ss_pred ChhHHHHHHHHHHhcC---CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCC
Q 038550 341 NVELGAWAAEHLFMLK---PQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNP 395 (423)
Q Consensus 341 ~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 395 (423)
..+.++.........+ -.-|..|...+..+.+.-.++.++-.---..+.+..|+.
T Consensus 454 ~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a 511 (644)
T PRK11619 454 WWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKA 511 (644)
T ss_pred CHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCC
Confidence 8888777665543321 112334555566666666666665433333456666654
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.68 E-value=6.2 Score=34.22 Aligned_cols=133 Identities=16% Similarity=0.248 Sum_probs=75.5
Q ss_pred hhhHHHHHHHHHhcCCCCchhhHHHHHHHHHh------HhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHH
Q 038550 139 CSESLSLFSEMRLLGMKHDVVSFMGAISACAN------LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLA 212 (423)
Q Consensus 139 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 212 (423)
++..+.+++.|++.|+.-+..+|.+....... ......+..+++.|.+..+-.+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT-------------------- 137 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT-------------------- 137 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc--------------------
Confidence 45667888999999988888777554333322 1234556666666666442111
Q ss_pred HHHhccCCCCChhhHHHHHHHHhccCC----HHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCc--HHHHHHHHHH
Q 038550 213 NKIFDCLPVKDSASWNTLILGYGMLGE----VDTAINLFEAMREDGVGYDP--VSYIAILTACSHGGL--VEKGKKYFDE 284 (423)
Q Consensus 213 ~~~~~~~~~~~~~~~~~li~~~~~~g~----~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~--~~~a~~~~~~ 284 (423)
.++...+..++.. ..++ .+.+..+|+.+.+.|+..+. .....++..+..... ..++.++++.
T Consensus 138 --------s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~ 207 (297)
T PF13170_consen 138 --------SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNA 207 (297)
T ss_pred --------CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 1122222223222 2222 35667777777777766543 233444433332222 4477888888
Q ss_pred HHHcCCCCChhhHHHHH
Q 038550 285 MQADSVKPTEMHYACMV 301 (423)
Q Consensus 285 ~~~~~~~~~~~~~~~l~ 301 (423)
+.+.|+++....|..+.
T Consensus 208 l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 208 LKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHcCCccccccccHHH
Confidence 88888888777766553
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.53 E-value=1.9 Score=34.10 Aligned_cols=62 Identities=13% Similarity=0.063 Sum_probs=42.7
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCch--hhHHHHHHHHHhHhhHHhhhHHHHHHHH
Q 038550 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV--VSFMGAISACANLAAIKQGKEIHGVTIR 186 (423)
Q Consensus 125 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 186 (423)
.+..+...|++.|+.+.|++.|.++.+....+.. ..+..+|....-.+++..+...+.++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4666777888888888888888888776544432 3455666666777777777777666554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.45 E-value=3.6 Score=30.97 Aligned_cols=44 Identities=9% Similarity=0.037 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhH
Q 038550 127 NILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL 171 (423)
Q Consensus 127 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 171 (423)
..++..+...+........++.+...+ ..+...++.++..+++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 345555555566666666666666554 34555556666666544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.43 E-value=3.7 Score=32.47 Aligned_cols=95 Identities=11% Similarity=0.090 Sum_probs=51.2
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHc---CCCCChhhHHHH
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP--VSYIAILTACSHGGLVEKGKKYFDEMQAD---SVKPTEMHYACM 300 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l 300 (423)
.+..+...|++.|+.+.|.+.|.++.+....+.. ..+..+|......+++..+...+.++... |-.++...-...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3555666666777777777777776665443332 24555566666666777666666665544 111111111111
Q ss_pred HH--HHHhcCChHHHHHHHhhC
Q 038550 301 VD--LLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 301 ~~--~~~~~~~~~~a~~~~~~~ 320 (423)
.. .+...+++.+|-+.|-..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 11 123456777777766655
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.15 E-value=7.1 Score=33.64 Aligned_cols=158 Identities=14% Similarity=0.050 Sum_probs=74.8
Q ss_pred hHHHHHHHHhccCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038550 226 SWNTLILGYGMLGEVD---TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~---~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 302 (423)
+...++.+|...+..+ +|..+++.+...... .+..+..-+..+.+.++.+.+.+.+.+|... +......+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHH
Confidence 4555666666665543 445555555433211 2344545556666677777777777777775 2212233444444
Q ss_pred HH---HhcCChHHHHHHHhhC---CCCCCHh-HHHHHH--HHH--HhcCC------hhHHHHHHHHHHhc--CCCCcchH
Q 038550 303 LL---GRAGLMEDAVKLIKNL---PVEPDAN-IWGALL--GAC--RIYGN------VELGAWAAEHLFML--KPQHCGYY 363 (423)
Q Consensus 303 ~~---~~~~~~~~a~~~~~~~---~~~~~~~-~~~~l~--~~~--~~~~~------~~~a~~~~~~~~~~--~p~~~~~~ 363 (423)
.+ .... ...|...+..+ .+.|... ....++ ..+ ...++ ++....++..+.+. .|-++.+-
T Consensus 164 ~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 33 3322 33444444433 2333322 111111 111 11111 33333444433221 23333322
Q ss_pred H-------HHHHHHHhcCChhHHHHHHHHH
Q 038550 364 I-------LLSNMYAEAGKWDEASKVRELM 386 (423)
Q Consensus 364 ~-------~l~~~~~~~g~~~~A~~~~~~m 386 (423)
. .-+..+.+.++|++|.+.|+-.
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 1 2234567889999999988743
|
It is also involved in sporulation []. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.31 Score=25.91 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=25.2
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 361 GYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
..+..++..+...|++++|++.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 467889999999999999999999987643
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.91 E-value=13 Score=36.19 Aligned_cols=168 Identities=14% Similarity=0.054 Sum_probs=97.0
Q ss_pred HHHHHhCCChHHHHHHHhhchhCCCCC---CchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 038550 30 VANFAQNRLELKALQLVREMPIHNEFP---NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKC 106 (423)
Q Consensus 30 l~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 106 (423)
++.+.+.+.+++|++..+.... ..| -.......+..+.-.|+++.|....-.|. ..+..-|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~----gn~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML----GNNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh----cchHHHHHHHHHHhccc
Confidence 5567788889999988776543 233 23456677777888888888888887776 34566676677777777
Q ss_pred CChHHHHHHh-chhc-CCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHH
Q 038550 107 GCLNLAQNVF-NISF-RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184 (423)
Q Consensus 107 g~~~~a~~~~-~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 184 (423)
++......++ ...+ -+...|..++..+.. .+. .-|.+..+. .+++...-..++++. ..++.+
T Consensus 437 ~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~----~~F~e~i~~-Wp~~Lys~l~iisa~--~~q~~q-------- 500 (846)
T KOG2066|consen 437 DQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDV----KGFLELIKE-WPGHLYSVLTIISAT--EPQIKQ-------- 500 (846)
T ss_pred cccchhhccCCCCCcccCchHHHHHHHHHHH-HHH----HHHHHHHHh-CChhhhhhhHHHhhc--chHHHh--------
Confidence 7776666665 2222 355677777777765 222 223333321 122222222222211 111111
Q ss_pred HHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCC
Q 038550 185 IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD 223 (423)
Q Consensus 185 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 223 (423)
.- -+......|+..|...+++++|..++-....++
T Consensus 501 ---~S-e~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~ 535 (846)
T KOG2066|consen 501 ---NS-ESTALLEVLAHLYLYDNKYEKALPIYLKLQDKD 535 (846)
T ss_pred ---hc-cchhHHHHHHHHHHHccChHHHHHHHHhccChH
Confidence 00 111222347778888888888888887776543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.48 Score=26.60 Aligned_cols=27 Identities=22% Similarity=0.100 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 328 IWGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 328 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
+++.|...|...|++++|..+++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 444455555555555555555555443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.37 Score=25.67 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=25.6
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 361 GYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
.+|..++.+|...|++++|+..+++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468889999999999999999999988743
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.28 Score=26.39 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=13.3
Q ss_pred CCchHHHHHHHHHHHhcCChHHHH
Q 038550 90 NFDLFLTNALTDMYAKCGCLNLAQ 113 (423)
Q Consensus 90 ~~~~~~~~~l~~~~~~~g~~~~a~ 113 (423)
|-+...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334555555555565556555553
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.39 E-value=5 Score=34.82 Aligned_cols=134 Identities=9% Similarity=0.023 Sum_probs=76.9
Q ss_pred hHHHHHHHhhchhCCCCCCchhHHHHHHHhhc--CC----CCccHHHHHHHHHHcCC---CCchHHHHHHHHHHHhcCCh
Q 038550 39 ELKALQLVREMPIHNEFPNSVTLTNVLPACAR--GH----FLRPGKEIHARIIRKGL---NFDLFLTNALTDMYAKCGCL 109 (423)
Q Consensus 39 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~ 109 (423)
+++.+.+++.|.+.|.+-+..+|-+....... .. ....+..+|+.|.+... .++..++..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45677788889999988777766654333332 22 25577888888887642 1333344444322 22222
Q ss_pred HHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchh--hHHHHHHHHHhH--hhHHhhhHHHHHHH
Q 038550 110 NLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV--SFMGAISACANL--AAIKQGKEIHGVTI 185 (423)
Q Consensus 110 ~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~--~~~~~a~~~~~~~~ 185 (423)
+.- .+.+...|+.+.+.|+..+.. ....++..+... .....+..+++.+.
T Consensus 156 e~l--------------------------~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~ 209 (297)
T PF13170_consen 156 EEL--------------------------AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK 209 (297)
T ss_pred HHH--------------------------HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 211 255677777777777655432 223333322221 22557778888888
Q ss_pred HhccCcchHHHHHHH
Q 038550 186 RKHLHTHLFVANSIL 200 (423)
Q Consensus 186 ~~~~~~~~~~~~~l~ 200 (423)
+.|+++....|..+.
T Consensus 210 ~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 210 KNGVKIKYMHYPTLG 224 (297)
T ss_pred HcCCccccccccHHH
Confidence 888887776665443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.33 E-value=2.9 Score=35.77 Aligned_cols=98 Identities=14% Similarity=0.161 Sum_probs=68.6
Q ss_pred hccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC-C--------ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC
Q 038550 187 KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-K--------DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY 257 (423)
Q Consensus 187 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 257 (423)
.|......+...++..-....+++++...+-++.. + ...+|-.++.. =++++++.++..=++.|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk----y~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK----YDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc----cChHHHHHHHhCcchhcccc
Confidence 34444455555566666666777887777765542 1 23333333332 36778888888888889999
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 038550 258 DPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288 (423)
Q Consensus 258 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 288 (423)
|..++..++..+.+.+++..|..+...|...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999888888877765
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.13 E-value=16 Score=35.66 Aligned_cols=141 Identities=8% Similarity=-0.038 Sum_probs=83.7
Q ss_pred cccCCcchhHHhhcccCC--c---ChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccH
Q 038550 3 AKSSRPAEASYLFHNIAE--K---NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPG 77 (423)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~--~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 77 (423)
.+.+.+++|+...+.... + --..+...|..+.-.|+++.|-...-.|... +..-|...+..++..+.....
T Consensus 367 l~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 367 LEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccchh
Confidence 456778889888877654 2 3446788889999999999999988888754 555666666666665554433
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHH---h------------------chhcCCcchHHHHHHHHhcC
Q 038550 78 KEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV---F------------------NISFRDEVSYNILIVGYSQT 136 (423)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~---~------------------~~~~~~~~~~~~l~~~~~~~ 136 (423)
..+ +.......++..|..++..+.. .+...-.++ + +....+...-..|+..|...
T Consensus 443 a~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d 518 (846)
T KOG2066|consen 443 APY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYD 518 (846)
T ss_pred hcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHc
Confidence 222 1111112344556665555544 221111111 1 00111223344577888888
Q ss_pred CChhhHHHHHHHHHh
Q 038550 137 SDCSESLSLFSEMRL 151 (423)
Q Consensus 137 ~~~~~a~~~~~~m~~ 151 (423)
+++..|+.++-..++
T Consensus 519 ~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 519 NKYEKALPIYLKLQD 533 (846)
T ss_pred cChHHHHHHHHhccC
Confidence 888888888776653
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=91.01 E-value=13 Score=34.41 Aligned_cols=176 Identities=9% Similarity=0.027 Sum_probs=121.5
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHhccCC--CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038550 192 HLFVANSILDFYTRSGRIDLANKIFDCLP--VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269 (423)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 269 (423)
+....-+++..+..+..+.-++.+..+|. ..+-..|..++++|..+ ..++-..+|+++.+..+ +......-+..+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHHHH
Confidence 44444567888888888888888877776 45677888999999888 66788889998888755 334444444444
Q ss_pred hccCcHHHHHHHHHHHHHcCCCC--C---hhhHHHHHHHHHhcCChHHHHHHHhhC----CCCCCHhHHHHHHHHHHhcC
Q 038550 270 SHGGLVEKGKKYFDEMQADSVKP--T---EMHYACMVDLLGRAGLMEDAVKLIKNL----PVEPDANIWGALLGACRIYG 340 (423)
Q Consensus 270 ~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~l~~~~~~~~ 340 (423)
...++...+..+|.++..+-++. + ...|..|...- ..+.+....+..++ +...-...+..+-.-|....
T Consensus 142 yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 142 YEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 44588888888998888763221 1 22454444321 45667777776665 33444556666667888999
Q ss_pred ChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038550 341 NVELGAWAAEHLFMLKPQHCGYYILLSNMYAE 372 (423)
Q Consensus 341 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 372 (423)
++.+|++++..+.+.+..+.-+...++.-+..
T Consensus 220 N~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 220 NWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred CHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 99999999999999887777666666655443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=90.93 E-value=0.57 Score=24.58 Aligned_cols=24 Identities=13% Similarity=0.041 Sum_probs=11.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCC
Q 038550 334 GACRIYGNVELGAWAAEHLFMLKP 357 (423)
Q Consensus 334 ~~~~~~~~~~~a~~~~~~~~~~~p 357 (423)
.++.+.|++++|...|+++.+..|
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHccCHHHHHHHHHHHHHHCc
Confidence 334444444444444444444444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.93 E-value=2.2 Score=32.65 Aligned_cols=112 Identities=16% Similarity=0.084 Sum_probs=64.7
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHH-HHHHHHhcCChHHHHHHHhhCC-CCCCHhHHHHHHHHHHhcCChh
Q 038550 266 LTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC-MVDLLGRAGLMEDAVKLIKNLP-VEPDANIWGALLGACRIYGNVE 343 (423)
Q Consensus 266 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 343 (423)
+..-...++.+++..++..+.-. .|....... -...+...|++.+|..+|+++. -.|....-..|+..|....+-.
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 33456778999999999999875 454333222 2344678999999999999993 3444444455555554443333
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHH
Q 038550 344 LGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASK 381 (423)
Q Consensus 344 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 381 (423)
.=...-+++.+.++ ++.+... +..+........|..
T Consensus 95 ~Wr~~A~evle~~~-d~~a~~L-v~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 95 SWRRYADEVLESGA-DPDARAL-VRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHHHhcCC-ChHHHHH-HHHHHHhccccchhh
Confidence 33344444555444 3333333 344444444444443
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=90.78 E-value=0.37 Score=23.95 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH
Q 038550 362 YYILLSNMYAEAGKWDEASKVRE 384 (423)
Q Consensus 362 ~~~~l~~~~~~~g~~~~A~~~~~ 384 (423)
+...++..+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566777777777777777664
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.66 E-value=0.36 Score=36.69 Aligned_cols=85 Identities=13% Similarity=0.112 Sum_probs=58.0
Q ss_pred HHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhH
Q 038550 63 NVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSES 142 (423)
Q Consensus 63 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 142 (423)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.++.+
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~--yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN--YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS--S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc--cCHHHHHHHHHhcchHHHH
Confidence 45677778888888889999988777666788889999999999888888888842211 2233455555666666666
Q ss_pred HHHHHHH
Q 038550 143 LSLFSEM 149 (423)
Q Consensus 143 ~~~~~~m 149 (423)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 5555543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.73 Score=39.66 Aligned_cols=98 Identities=10% Similarity=-0.002 Sum_probs=68.1
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CC-CCCHhHHHHHHHHHHhcCChhH
Q 038550 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PV-EPDANIWGALLGACRIYGNVEL 344 (423)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~ 344 (423)
+-|.++|++++|+..|....... +.|.+++..-..+|.+...+..|+.-.... .+ +.-...|..-..+-...|+..+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 46899999999999999887752 337888888888999988888776554433 11 1112234444444445677888
Q ss_pred HHHHHHHHHhcCCCCcchHHH
Q 038550 345 GAWAAEHLFMLKPQHCGYYIL 365 (423)
Q Consensus 345 a~~~~~~~~~~~p~~~~~~~~ 365 (423)
|.+-++.++++.|.+...-..
T Consensus 184 AKkD~E~vL~LEP~~~ELkK~ 204 (536)
T KOG4648|consen 184 AKKDCETVLALEPKNIELKKS 204 (536)
T ss_pred HHHhHHHHHhhCcccHHHHHH
Confidence 888899999999986544333
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.32 E-value=11 Score=36.35 Aligned_cols=154 Identities=14% Similarity=0.073 Sum_probs=80.2
Q ss_pred hccCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHhccC-----cHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038550 235 GMLGEVDTAINLFEAMRE-------DGVGYDPVSYIAILTACSHGG-----LVEKGKKYFDEMQADSVKPTEMHYACMVD 302 (423)
Q Consensus 235 ~~~g~~~~a~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 302 (423)
....+.+.|+.+|+.+.+ .| .+.....+..+|.+.. +.+.|..++....+.| .|+.......+.
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLY 335 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 345677777777777655 44 2234445555555532 5666777777777766 344443332222
Q ss_pred HHHh-cCChHHHHHHHhhCCCCCCHhHHHHHHHHH----HhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChh
Q 038550 303 LLGR-AGLMEDAVKLIKNLPVEPDANIWGALLGAC----RIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWD 377 (423)
Q Consensus 303 ~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 377 (423)
.... ..+...|.++|......-....+-.+...| ....+...|...+.++.+.++.....-......+.. ++++
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~ 414 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYD 414 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-cccc
Confidence 2222 235667777777762222222222222222 233467777777777777773221111122222333 6777
Q ss_pred HHHHHHHHHHhccccC
Q 038550 378 EASKVRELMKSREAKK 393 (423)
Q Consensus 378 ~A~~~~~~m~~~~~~~ 393 (423)
.+.-.+..+.+.|.+.
T Consensus 415 ~~~~~~~~~a~~g~~~ 430 (552)
T KOG1550|consen 415 TALALYLYLAELGYEV 430 (552)
T ss_pred HHHHHHHHHHHhhhhH
Confidence 7776666666666543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.30 E-value=7.2 Score=31.15 Aligned_cols=94 Identities=12% Similarity=0.011 Sum_probs=62.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038550 231 ILGYGMLGEVDTAINLFEAMREDGVGYDP-----VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305 (423)
Q Consensus 231 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (423)
..-+.+.|++++|..-|.+.+.. +++.. ..|..-..++.+.+.++.|+.-..+.++.+ +........-..+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHH
Confidence 34467889999999999888876 33322 234444556778888888888888877754 112223333345777
Q ss_pred hcCChHHHHHHHhhC-CCCCCH
Q 038550 306 RAGLMEDAVKLIKNL-PVEPDA 326 (423)
Q Consensus 306 ~~~~~~~a~~~~~~~-~~~~~~ 326 (423)
+...+++|++-|+++ ...|..
T Consensus 180 k~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcch
Confidence 888888888888877 445543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.05 E-value=4.8 Score=30.40 Aligned_cols=106 Identities=12% Similarity=0.112 Sum_probs=63.0
Q ss_pred HHHHHHHHHH---HhccCcHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHH
Q 038550 259 PVSYIAILTA---CSHGGLVEKGKKYFDEMQADSVKPT---EMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGAL 332 (423)
Q Consensus 259 ~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l 332 (423)
....+.|+.. -...++++++..+++.|.-. .|+ ..++. ...+...|++++|.++|+++...+....+..-
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kA 82 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVL--RPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKA 82 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHH
Confidence 3444444443 34578999999999999875 444 33333 33467899999999999999433322233333
Q ss_pred HHHHHh--cCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 038550 333 LGACRI--YGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387 (423)
Q Consensus 333 ~~~~~~--~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 387 (423)
+.++|. .||. .|...+......+.-.+++.+.+.+.
T Consensus 83 L~A~CL~al~Dp-------------------~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 83 LLALCLNAKGDA-------------------EWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHHHhcCCh-------------------HHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 333322 2222 24444445555555566666666665
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.75 E-value=3 Score=28.68 Aligned_cols=63 Identities=10% Similarity=0.076 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038550 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302 (423)
Q Consensus 239 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 302 (423)
+.=++.+-+..+....+.|++....+.+.+|.+.+++..|.++++-.+.+ ...+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 33456666777777778889999999999999999999999999887755 1224446666554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.51 E-value=2.7 Score=29.24 Aligned_cols=61 Identities=10% Similarity=0.082 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038550 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL 303 (423)
Q Consensus 242 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 303 (423)
+..+-+..+....+.|++....+.+.+|.+.+++..|.++++-++.+ ..+....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHH
Confidence 45566666667778888888899999999999999999999888776 22333367666643
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.28 E-value=0.83 Score=25.57 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=24.5
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 361 GYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
.++..++..|...|++++|..++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788999999999999999999998763
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.07 E-value=3.9 Score=28.51 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=32.9
Q ss_pred hCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 038550 319 NLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367 (423)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 367 (423)
.+.+-|++.+..+.+++|.+.+|+..|.++++-+...-......|..++
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 3467788888888888888888888888888888776554444565554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.02 E-value=10 Score=30.22 Aligned_cols=124 Identities=12% Similarity=0.013 Sum_probs=80.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHH-----HHHHHHhcCChHHHHHHHhhCCCCCCHhHHHH----
Q 038550 261 SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC-----MVDLLGRAGLMEDAVKLIKNLPVEPDANIWGA---- 331 (423)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---- 331 (423)
.|..++.+.. .+.+ +.....+.+... +...+|.. +...+..++++++|+..++..--.|....+..
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~---n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~l 130 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQA---NGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhh---ccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHH
Confidence 4445554433 2333 444445555543 22233333 34677899999999999986622343333333
Q ss_pred -HHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 332 -LLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 332 -l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
|.+.....|.+++|+..+....+..- .+.....-++++...|+-++|+.-|++....+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 44667889999999998887654321 12234456788999999999999999998876
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.94 E-value=14 Score=31.80 Aligned_cols=135 Identities=11% Similarity=-0.007 Sum_probs=68.8
Q ss_pred chhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcC--CHHHHHHHhccCCCCChhhHHHHHHHH
Q 038550 157 DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG--RIDLANKIFDCLPVKDSASWNTLILGY 234 (423)
Q Consensus 157 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~li~~~ 234 (423)
+..+-...+.++.+.++. .+...+-.+.+ .++..+-...+.++.+.+ ..+-...+...+..++..+-...+.++
T Consensus 141 ~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aL 216 (280)
T PRK09687 141 STNVRFAVAFALSVINDE-AAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGL 216 (280)
T ss_pred CHHHHHHHHHHHhccCCH-HHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 444444555555555542 33344333333 223333344444444432 222222333444455666666677777
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038550 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLL 304 (423)
Q Consensus 235 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (423)
.+.|+. .|+..+-+..+.+ + .....+.++...|.. +|...+..+... .||..+-...+.++
T Consensus 217 g~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 217 ALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 777763 4555555555432 2 234566777777775 577777777654 34655555555544
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.92 E-value=14 Score=31.57 Aligned_cols=60 Identities=18% Similarity=-0.003 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 329 WGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 329 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
++.....|...|.+.+|.++-+++...+|-+...+..++..+...|+--.|..-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344457889999999999999999999999999999999999999998888888877743
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.76 E-value=3 Score=35.50 Aligned_cols=61 Identities=18% Similarity=0.037 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 329 WGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 329 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
.+.+-.+|.+.++++.|.++.+.+....|+++.-+.--+..|.+.|.+..|..=++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4555677888899999999999999999998888888888888999988888877777654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.66 E-value=5.2 Score=37.59 Aligned_cols=164 Identities=13% Similarity=0.061 Sum_probs=99.2
Q ss_pred ChhhHHHHHHH-----HHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHH
Q 038550 22 NIVSWNAMVAN-----FAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLT 96 (423)
Q Consensus 22 ~~~~~~~ll~~-----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (423)
++.+|..+++. ..-.|+++.|..++..+. ....+.++..+.+.|..++|+++ .+|+.-
T Consensus 580 nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~- 642 (794)
T KOG0276|consen 580 NVISYKILLEVLEYQTLVLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL---------STDPDQ- 642 (794)
T ss_pred ceEeEeeehHHHHHHHHhhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc---------CCChhh-
Confidence 44444444433 344567777766554443 22345566666677766666544 222221
Q ss_pred HHHHHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHh
Q 038550 97 NALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176 (423)
Q Consensus 97 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 176 (423)
-.....+.|+++.|.++... ..+..-|..|..+..+.+++..|.+.|.+... |..|+-.+...|+-+.
T Consensus 643 --rFelal~lgrl~iA~~la~e-~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 643 --RFELALKLGRLDIAFDLAVE-ANSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEG 710 (794)
T ss_pred --hhhhhhhcCcHHHHHHHHHh-hcchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhH
Confidence 12334567888888777621 23456688888888889998888888877654 3345555666666665
Q ss_pred hhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC
Q 038550 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP 220 (423)
Q Consensus 177 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 220 (423)
...+-....+.|.. |.-..+|...|+++++.+++.+-.
T Consensus 711 l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 711 LAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHhcC
Confidence 55555555555532 233345677889999888886553
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=88.53 E-value=9.7 Score=34.81 Aligned_cols=129 Identities=9% Similarity=0.067 Sum_probs=83.6
Q ss_pred hccCcHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-C-CCCCHhHHHHHHHHHHhcCChhHHH
Q 038550 270 SHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-P-VEPDANIWGALLGACRIYGNVELGA 346 (423)
Q Consensus 270 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~ 346 (423)
...|+...|.+-+....++ .-.|+.....+ ..+...|+++.+...+... + +.....+..++++.....|+++.|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 3456666665544444443 22344433333 3345678888888888776 2 3445667888888888889999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCCCCccccc
Q 038550 347 WAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQT 402 (423)
Q Consensus 347 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 402 (423)
...+.+....-.++......+..-...|-+|++...++++...+ |+...-|...
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~--~~~~~g~v~~ 431 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN--PETQSGWVNF 431 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccC--Chhcccceee
Confidence 88888888776666665555444556678888888888886543 3333444433
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=88.49 E-value=0.68 Score=24.27 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 362 YYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 362 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
++..++.++.+.|++++|.+.++++.+.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 35667889999999999999999998754
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.36 E-value=3.9 Score=28.17 Aligned_cols=47 Identities=21% Similarity=0.260 Sum_probs=32.1
Q ss_pred CCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 038550 320 LPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILL 366 (423)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 366 (423)
+.+-|++.+..+.+++|.+.+|+..|.++++-++..-..+...|..+
T Consensus 36 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 36 YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 35677888888888888888888888888877665443333344444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.12 E-value=13 Score=30.26 Aligned_cols=161 Identities=12% Similarity=0.062 Sum_probs=80.7
Q ss_pred CcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhcc-CcchHHHHHHH
Q 038550 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHL-HTHLFVANSIL 200 (423)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~ 200 (423)
-+..||-|.--+...|+++.|.+.|+...+.. +....+...-.-++.-.|++..|.+-+...-+.+. .|-...|--+.
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccC-CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 34567777777777777777777777776643 11222222222233345666666655554444332 22222222222
Q ss_pred HHHHhcCCHHHHHH-HhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-------CHHHHHHHHHHHhcc
Q 038550 201 DFYTRSGRIDLANK-IFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY-------DPVSYIAILTACSHG 272 (423)
Q Consensus 201 ~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-------~~~~~~~ll~~~~~~ 272 (423)
. +.-++.+|.. +.++....|..-|..-|-.|.- |++. ...+++.+... ..- =..||.-+..-+...
T Consensus 177 E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 177 E---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred H---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhcc
Confidence 1 2234444443 3344444454555444433321 1111 11223332221 111 125677888888888
Q ss_pred CcHHHHHHHHHHHHHcC
Q 038550 273 GLVEKGKKYFDEMQADS 289 (423)
Q Consensus 273 ~~~~~a~~~~~~~~~~~ 289 (423)
|+.++|..+|+-.+...
T Consensus 251 G~~~~A~~LfKLaiann 267 (297)
T COG4785 251 GDLDEATALFKLAVANN 267 (297)
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 88888888888877654
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.04 E-value=16 Score=31.43 Aligned_cols=25 Identities=12% Similarity=0.005 Sum_probs=11.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCC
Q 038550 332 LLGACRIYGNVELGAWAAEHLFMLKP 357 (423)
Q Consensus 332 l~~~~~~~~~~~~a~~~~~~~~~~~p 357 (423)
.+.++...|+. +|...+..+.+..|
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 34444444443 35555555544444
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.02 E-value=1.3 Score=23.36 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=25.6
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 361 GYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
.+|..++..|...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 36788999999999999999999998764
|
... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.75 E-value=6.5 Score=31.49 Aligned_cols=72 Identities=11% Similarity=-0.062 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCChHHH
Q 038550 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD---SVKPTEMHYACMVDLLGRAGLMEDA 313 (423)
Q Consensus 241 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 313 (423)
+.|.+.|-.+...+.--++.....|...| ...+.+++..++.+..+. +-.+|+..+.+|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34455555555444333333333333333 244555555555555543 1234455555555555555555544
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.66 E-value=2.2 Score=34.98 Aligned_cols=85 Identities=11% Similarity=-0.034 Sum_probs=51.7
Q ss_pred HhccCcHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHhh-CCCCCCHhHH-HHHHHHHHhcCChhHH
Q 038550 269 CSHGGLVEKGKKYFDEMQADSVKPTE-MHYACMVDLLGRAGLMEDAVKLIKN-LPVEPDANIW-GALLGACRIYGNVELG 345 (423)
Q Consensus 269 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~-~~l~~~~~~~~~~~~a 345 (423)
|....+++.|...|.+.+.. .|+. .-|..=+.++.+..+++.+..--++ +.+.||..-- -.+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 55666777777777666653 4555 3344445566667777766544333 3566665533 3344556677778888
Q ss_pred HHHHHHHHhc
Q 038550 346 AWAAEHLFML 355 (423)
Q Consensus 346 ~~~~~~~~~~ 355 (423)
+..+.++.++
T Consensus 98 I~~Lqra~sl 107 (284)
T KOG4642|consen 98 IKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHH
Confidence 8888777553
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=87.22 E-value=1.3 Score=22.45 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 038550 363 YILLSNMYAEAGKWDEASKVRELM 386 (423)
Q Consensus 363 ~~~l~~~~~~~g~~~~A~~~~~~m 386 (423)
+..++..+...|++++|...+++.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334444444444444444444443
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.93 E-value=15 Score=31.72 Aligned_cols=46 Identities=11% Similarity=0.135 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhh
Q 038550 274 LVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKN 319 (423)
Q Consensus 274 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 319 (423)
++++++.++..=+..|+-||..+++.+|+.+.+.+++.+|.++...
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~ 160 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTE 160 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 3445555555555555556666666666666666665555555433
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.77 E-value=2.7 Score=33.98 Aligned_cols=72 Identities=21% Similarity=0.180 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc---chHHHHHH
Q 038550 297 YACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC---GYYILLSN 368 (423)
Q Consensus 297 ~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~ 368 (423)
.+..+..+.+.+.+.+++...+.- +-+| |...-..|+..++-.|++++|..-++-+-++.|... .+|..++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 444566777888888888876544 5566 556677788888999999999888888888877643 34444443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.18 E-value=3.1 Score=36.06 Aligned_cols=93 Identities=17% Similarity=0.070 Sum_probs=62.3
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038550 231 ILGYGMLGEVDTAINLFEAMREDGVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL 309 (423)
Q Consensus 231 i~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 309 (423)
..-|.+.|.+++|+..|...... .| +++++..-..+|.+...+..|+.-....+..+ ..-...|..-+.+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 45689999999999999987764 45 88889888999999999998888777776542 1112233333333333444
Q ss_pred hHHHHHHHhhC-CCCCCH
Q 038550 310 MEDAVKLIKNL-PVEPDA 326 (423)
Q Consensus 310 ~~~a~~~~~~~-~~~~~~ 326 (423)
..+|.+-++.. .+.|+.
T Consensus 181 ~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhHHHHHhhCccc
Confidence 55555444443 466763
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.72 E-value=12 Score=30.02 Aligned_cols=78 Identities=10% Similarity=0.012 Sum_probs=48.7
Q ss_pred hcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHh---ccCcchHHHHHHHHHHHhcCCHH
Q 038550 134 SQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRK---HLHTHLFVANSILDFYTRSGRID 210 (423)
Q Consensus 134 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~ 210 (423)
.+.|+ +.|.+.|-++...+.--++.....+...| ...+.+++..++....+. +-.+++..+.+|+..|.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 33344 66777777777766444444444444433 466777777777766652 22566777777777777777777
Q ss_pred HHH
Q 038550 211 LAN 213 (423)
Q Consensus 211 ~A~ 213 (423)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 663
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.67 E-value=24 Score=33.44 Aligned_cols=103 Identities=17% Similarity=0.127 Sum_probs=61.8
Q ss_pred HHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 038550 202 FYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKY 281 (423)
Q Consensus 202 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 281 (423)
...+.|+++.|.++..+.. +..-|..|..+..+.|++..|.+.|..... |..|+-.+...|+.+....+
T Consensus 646 lal~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hhhhcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHH
Confidence 3445667777766655443 556677777777777777777777765443 34455556666666555555
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC
Q 038550 282 FDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321 (423)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 321 (423)
-....+.| +.|. -.-+|...|+++++.+++.+-+
T Consensus 715 a~~~~~~g-~~N~-----AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 715 ASLAKKQG-KNNL-----AFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHHhhc-ccch-----HHHHHHHcCCHHHHHHHHHhcC
Confidence 55555554 2222 2334556677777777766553
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=85.52 E-value=3.7 Score=28.18 Aligned_cols=49 Identities=16% Similarity=-0.001 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CcchHHHHHHHHHhcCC
Q 038550 327 NIWGALLGACRIYGNVELGAWAAEHLFMLKPQ--HCGYYILLSNMYAEAGK 375 (423)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~ 375 (423)
...-.+...+...|++++|++.+-.+.+.++. +...-..|+..+.-.|.
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 34444444555555555555555555544432 23334444444444444
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=85.48 E-value=1.6 Score=25.15 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=20.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 365 LLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 365 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
.|+.+|...|+.+.|.+++++..+.|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46778888888888888888887544
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=85.36 E-value=1.9 Score=26.03 Aligned_cols=33 Identities=15% Similarity=0.091 Sum_probs=25.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcchHH
Q 038550 332 LLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI 364 (423)
Q Consensus 332 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 364 (423)
+.-++.+.|++++|.+..+.+.+.+|++..+..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 456778999999999999999999999865543
|
|
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=83.75 E-value=14 Score=27.36 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcC--CCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 038550 344 LGAWAAEHLFMLK--PQHCGYYILLSNMYAEAGKWDEASKVREL 385 (423)
Q Consensus 344 ~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 385 (423)
.+..+|..+...+ ...+.+|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7778888886644 56667788888889999999999988864
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.92 E-value=25 Score=29.90 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=28.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHH-------HHHHHHHhccCcHHHH
Q 038550 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSY-------IAILTACSHGGLVEKG 278 (423)
Q Consensus 230 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-------~~ll~~~~~~~~~~~a 278 (423)
+..-..+.+++++|+..+.++...|+..+..+. ..+...|...|+...-
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l 64 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSL 64 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchH
Confidence 344456667777777777777777776665443 2334445555544433
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=82.80 E-value=3 Score=21.46 Aligned_cols=29 Identities=14% Similarity=0.223 Sum_probs=23.0
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHHHH
Q 038550 340 GNVELGAWAAEHLFMLKPQHCGYYILLSN 368 (423)
Q Consensus 340 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 368 (423)
|+.+.+..+|+++....|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46778888888888888888888777664
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.05 E-value=6.1 Score=37.01 Aligned_cols=96 Identities=16% Similarity=0.031 Sum_probs=53.9
Q ss_pred cCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-C-CCCCHhHHHHHHHHHHhcCChhHHHHHH
Q 038550 272 GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-P-VEPDANIWGALLGACRIYGNVELGAWAA 349 (423)
Q Consensus 272 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 349 (423)
.|+...|...+.........-.....-.|.+...+.|-..+|-.++.+. . ....+.++-.+.+++....+++.|++.+
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 3566666666655544321112223334455555556555666555433 2 1234456666667777777777777777
Q ss_pred HHHHhcCCCCcchHHHHH
Q 038550 350 EHLFMLKPQHCGYYILLS 367 (423)
Q Consensus 350 ~~~~~~~p~~~~~~~~l~ 367 (423)
+++.+..|.++..-+.|.
T Consensus 700 ~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 700 RQALKLTTKCPECENSLK 717 (886)
T ss_pred HHHHhcCCCChhhHHHHH
Confidence 777777777666655443
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.70 E-value=27 Score=28.51 Aligned_cols=76 Identities=12% Similarity=-0.036 Sum_probs=52.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc--CCCCChhhHHHHHHH
Q 038550 227 WNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD--SVKPTEMHYACMVDL 303 (423)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~ 303 (423)
.+.-++.+.+.+...+++...++-.+.. +.|...-..++..+|-.|++++|..-++-.-.. ...+-..+|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4455667778888889888888766653 225566777888899999999998877776654 223334555555544
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=81.69 E-value=44 Score=30.88 Aligned_cols=90 Identities=11% Similarity=0.158 Sum_probs=46.8
Q ss_pred cCChHHHHHHHhhC-CCCCCHh----HHHHHHHHHHhcC-ChhHHHH------HHHHHHhcCCCCcchHHHHHHHHHhcC
Q 038550 307 AGLMEDAVKLIKNL-PVEPDAN----IWGALLGACRIYG-NVELGAW------AAEHLFMLKPQHCGYYILLSNMYAEAG 374 (423)
Q Consensus 307 ~~~~~~a~~~~~~~-~~~~~~~----~~~~l~~~~~~~~-~~~~a~~------~~~~~~~~~p~~~~~~~~l~~~~~~~g 374 (423)
.|+.++|+.++-.+ .+.||.. -|..+++.+-... +-...+. ..+++.-.+..+..+..-.+.--....
T Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (831)
T PRK15180 711 EGRLDEALSVLISLKRIEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAMHLR 790 (831)
T ss_pred cccHHHHHHHHHhhhccCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHhHHH
Confidence 37788888887666 5778765 3445555443221 1111111 112222222333222211112234567
Q ss_pred ChhHHHHHHHHHHhccccCCCC
Q 038550 375 KWDEASKVRELMKSREAKKNPG 396 (423)
Q Consensus 375 ~~~~A~~~~~~m~~~~~~~~~~ 396 (423)
++..|+++++++.+.+-+.+|.
T Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~ 812 (831)
T PRK15180 791 DYTQALQYWQRLEKVNGPTEPV 812 (831)
T ss_pred HHHHHHHHHHHHHhccCCCcch
Confidence 8999999999998866544443
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=81.59 E-value=32 Score=29.28 Aligned_cols=102 Identities=15% Similarity=-0.008 Sum_probs=51.6
Q ss_pred ccCCcchhHHhhcccCCcChhhHHHHHHHHHhCCChHHHHHHHhh----chhCCCCCCchhHHHHHHHhhcCCCCc-cHH
Q 038550 4 KSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVRE----MPIHNEFPNSVTLTNVLPACARGHFLR-PGK 78 (423)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~ 78 (423)
+++++++|++++..- ...+.+.|+...|-++-.- ..+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 456777776665432 2334555555544443322 233455556555555555554433221 233
Q ss_pred HHHHHHHH---cC--CCCchHHHHHHHHHHHhcCChHHHHHHh
Q 038550 79 EIHARIIR---KG--LNFDLFLTNALTDMYAKCGCLNLAQNVF 116 (423)
Q Consensus 79 ~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 116 (423)
++.+.+++ .| ..-++..+..+...|.+.|++.+|+..|
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 33333332 22 1246778888889999999999998888
|
; PDB: 3LKU_E 2WPV_G. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.87 E-value=48 Score=30.83 Aligned_cols=66 Identities=11% Similarity=0.012 Sum_probs=42.9
Q ss_pred CCCHhHH-HHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH--hcCChhHHHHHHHHHHh
Q 038550 323 EPDANIW-GALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA--EAGKWDEASKVRELMKS 388 (423)
Q Consensus 323 ~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~ 388 (423)
.|+..++ +.++..+.+.|-..+|..++.....+.|.+...|..++..-. ..-+...++.+|+.|..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~ 524 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALR 524 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHH
Confidence 4444433 456666777777888888888888887777777776665432 12236667777777754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.5 bits (137), Expect = 5e-09
Identities = 10/96 (10%), Positives = 27/96 (28%), Gaps = 3/96 (3%)
Query: 223 DSASWNTLILGYGMLGEVDTAINLFEAMRE---DGVGYDPVSYIAILTACSHGGLVEKGK 279
+ ++ A +L Y A++ + G ++
Sbjct: 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELV 185
Query: 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVK 315
++ + P + YA + +GR ++
Sbjct: 186 YVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIE 221
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.7 bits (122), Expect = 3e-07
Identities = 18/125 (14%), Positives = 41/125 (32%), Gaps = 8/125 (6%)
Query: 54 EFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQ 113
E P L +L L + + + L+ A L LA
Sbjct: 88 ESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAH 147
Query: 114 NVFNISFR--------DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAI 165
++ + YN +++G+++ E + + ++ G+ D++S+ A+
Sbjct: 148 HLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207
Query: 166 SACAN 170
Sbjct: 208 QCMGR 212
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 6e-05
Identities = 65/435 (14%), Positives = 119/435 (27%), Gaps = 141/435 (32%)
Query: 42 ALQLVREMPIHNEFPNSV---TLTNV------------------LPACARG-HFLRPGKE 79
AL + + + + L N +R H
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 80 IHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNV--------FNISFR---------- 121
IH+ I+ L L + Y CL + NV FN+S +
Sbjct: 227 IHS--IQAELR-RLLKSK----PYEN--CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 122 -DEVS----YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACA-NLAAIK 175
D +S +I + +S T E SL + L + + N +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLL--KYLDCRPQDLP----REVLTTNPRRLS 331
Query: 176 QGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235
I +IR L T D + L I L V + A + + +
Sbjct: 332 ----IIAESIRDGLAT--------WDNWKHVNCDKLTTIIESSLNVLEPAEYRKM---FD 376
Query: 236 MLG--EVDTAI--NLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK---------YF 282
L I L + D + D + ++ LVEK K Y
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDV---MVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 283 DEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIK-----NLPVEPDANIWGALLGACR 337
+ ++ +H + + D + K +L + + +G
Sbjct: 434 E-LKVKLENEYALHRSIV-----------DHYNIPKTFDSDDLIPPYLDQYFYSHIG--- 478
Query: 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGC 397
+ HL +H L ++ + ++ E K+R +
Sbjct: 479 -H-----------HLK--NIEHPERMTLFRMVFLDF-RFLEQ-KIR----------HDST 512
Query: 398 SWVQTR---DEVQDF 409
+W + + +Q
Sbjct: 513 AWNASGSILNTLQQL 527
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 1e-04
Identities = 50/363 (13%), Positives = 105/363 (28%), Gaps = 99/363 (27%)
Query: 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKE 179
E +I++ S +L LF + + V F+ + N +
Sbjct: 46 LSKEEIDHIIMSK----DAVSGTLRLFWTLLSKQ-EEMVQKFVEEVLR-INYKFLMS--P 97
Query: 180 IHGVTIRKHLHTHLFVA--------NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLI 231
I + + T +++ N + Y S R+ K+ L A ++
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-RLQPYLKLRQALLELRPAKN--VL 154
Query: 232 LGYGMLG---EVDTAINLFEAMREDGVG---YDPVSYIAILTACSHGGLVEKGKKYFDEM 285
+ G+LG + V + ++ + S ++E +K ++
Sbjct: 155 I-DGVLGSGKTWVAL----DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 286 ------QADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP--------VEPDANIWGA 331
++D ++ + L R L++ K V+ +A W A
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRR--LLKS-----KPYENCLLVLLNVQ-NAKAWNA 261
Query: 332 LLGACRI-----YGNV--ELGAWAAEHLFM--------------------------LKPQ 358
+C+I + V L A H+ + L +
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 359 HCGYYILLSNMYAEAGK-----WD-----EASKVRELMKSREAKKNPGCSWVQTRDEVQD 408
++ AE+ + WD K+ +++S P + R
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA----EYRKMFDR 377
Query: 409 FVV 411
V
Sbjct: 378 LSV 380
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 423 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.88 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.87 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.86 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.85 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.85 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.83 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.83 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.82 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.79 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.75 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.74 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.74 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.73 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.73 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.73 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.71 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.71 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.7 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.68 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.67 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.66 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.65 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.65 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.64 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.64 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.64 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.64 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.63 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.63 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.63 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.63 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.62 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.62 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.61 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.61 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.6 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.59 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.58 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.54 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.52 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.52 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.51 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.51 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.5 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.5 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.49 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.48 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.47 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.47 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.46 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.46 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.43 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.41 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.41 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.4 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.39 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.39 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.35 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.32 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.28 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.27 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.27 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.27 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.25 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.25 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.23 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.21 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.2 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.19 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.18 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.18 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.17 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.17 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.13 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.11 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.1 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.09 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.09 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.05 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.04 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.03 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.02 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.02 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.01 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.0 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.0 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.0 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.99 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.99 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.97 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.97 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.96 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.94 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.92 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.92 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.91 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.91 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.9 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.9 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.89 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.86 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.85 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.84 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.84 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.83 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.82 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.77 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.76 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.76 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.76 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.75 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.74 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.74 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.73 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.73 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.72 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.72 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.71 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.69 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.69 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.68 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.68 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.67 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.67 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.67 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.66 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.65 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.64 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.64 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.64 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.62 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.62 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.61 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.61 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.6 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.6 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.6 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.56 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.54 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.54 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.53 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.51 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.51 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.51 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.5 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.49 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.48 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.47 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.47 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.44 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.44 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.44 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.43 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.42 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.42 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.41 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.4 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.4 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.4 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.39 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.37 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.34 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.31 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.3 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.26 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.23 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.18 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.18 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.16 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.14 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.12 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.1 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.02 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.98 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.97 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.96 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.95 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.93 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.9 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.88 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.87 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.76 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.73 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.72 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.6 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.6 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.53 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.52 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.47 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.41 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.4 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.39 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.35 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.34 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 97.26 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.19 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.19 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.01 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.0 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.83 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.78 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.76 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.66 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.65 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.55 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.11 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.08 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.06 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.04 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.03 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.89 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.67 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.64 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.15 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.4 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.39 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 94.23 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.11 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.13 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.82 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.69 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.62 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.02 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 90.36 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.35 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.17 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 90.13 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 90.12 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.89 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 89.71 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.44 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 88.78 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.19 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 87.87 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 87.74 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 86.43 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.1 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 85.78 | |
| 2wvi_A | 164 | Mitotic checkpoint serine/threonine-protein kinase | 84.72 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 84.42 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 84.11 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 84.05 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 83.56 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 81.88 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 81.09 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-38 Score=299.31 Aligned_cols=392 Identities=11% Similarity=-0.001 Sum_probs=334.6
Q ss_pred ccccCCcchhHHhhcccC--CcChhhHHHHHHHHHhCCChHHHHHHHhhchhC---------------CCCCCchhHHHH
Q 038550 2 YAKSSRPAEASYLFHNIA--EKNIVSWNAMVANFAQNRLELKALQLVREMPIH---------------NEFPNSVTLTNV 64 (423)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---------------~~~p~~~~~~~l 64 (423)
|.+.|++++|+.+|+.+. .++..+++.++.+|.+.|++++|.++|+++... +.+++..+|+.+
T Consensus 127 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 206 (597)
T 2xpi_A 127 YCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLR 206 (597)
T ss_dssp HHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHH
Confidence 567788888888888874 478888899999999999999999998854322 223457788899
Q ss_pred HHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHH--------------------------------------HHHHHHhc
Q 038550 65 LPACARGHFLRPGKEIHARIIRKGLNFDLFLTNA--------------------------------------LTDMYAKC 106 (423)
Q Consensus 65 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------------------------------------l~~~~~~~ 106 (423)
+.++.+.|++++|.++|++|.+.+. .+...+.. ++..|.+.
T Consensus 207 ~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (597)
T 2xpi_A 207 GQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHE 285 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCc
Confidence 9999999999999999999987752 23333322 24456677
Q ss_pred CChHHHHHHh-chh--cCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHH
Q 038550 107 GCLNLAQNVF-NIS--FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGV 183 (423)
Q Consensus 107 g~~~~a~~~~-~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 183 (423)
|++++|.++| +.. +++..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++.
T Consensus 286 g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (597)
T 2xpi_A 286 DELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISND 364 (597)
T ss_dssp HHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8888999988 222 4788999999999999999999999999999876 55788999999999999999999999999
Q ss_pred HHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH
Q 038550 184 TIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPV 260 (423)
Q Consensus 184 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 260 (423)
+.+.. +.+..++..++.+|.+.|++++|.++|+++. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..
T Consensus 365 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 442 (597)
T 2xpi_A 365 LVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHL 442 (597)
T ss_dssp HHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSH
T ss_pred HHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchH
Confidence 98654 4567888999999999999999999999875 4578899999999999999999999999999874 34788
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-------CCCCC--HhHHHH
Q 038550 261 SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-------PVEPD--ANIWGA 331 (423)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~--~~~~~~ 331 (423)
+|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~ 521 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN 521 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 99999999999999999999999999874 557889999999999999999999999987 45787 789999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCCCCccc
Q 038550 332 LLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWV 400 (423)
Q Consensus 332 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 400 (423)
++.+|.+.|++++|...++++.+.+|+++.+|..++.+|.+.|++++|.++++++.+.. |+....|.
T Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~ 588 (597)
T 2xpi_A 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS--PNEIMASD 588 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999998753 44433333
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-37 Score=292.67 Aligned_cols=378 Identities=8% Similarity=-0.093 Sum_probs=321.8
Q ss_pred cccCCcchhHHhhcccCCcChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHH
Q 038550 3 AKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHA 82 (423)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 82 (423)
.+.|.+..+...+..++.+++..|+.++..|.+.|++++|..+|++|.. ..|+..++..++.+|.+.|++++|..+|+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 141 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLT 141 (597)
T ss_dssp ------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHH
Confidence 3456677778888888888999999999999999999999999999985 45788999999999999999999999999
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHhc-hhcCC-------------------cchHHHHHHHHhcCCChhhH
Q 038550 83 RIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFN-ISFRD-------------------EVSYNILIVGYSQTSDCSES 142 (423)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~-------------------~~~~~~l~~~~~~~~~~~~a 142 (423)
.+... +++..+++.++.+|.+.|++++|.++|+ ..+.+ ..+|+.++.+|.+.|++++|
T Consensus 142 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 219 (597)
T 2xpi_A 142 KEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRA 219 (597)
T ss_dssp HTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHH
Confidence 88644 7889999999999999999999999995 44433 67899999999999999999
Q ss_pred HHHHHHHHhcCCCCchhhHHHH--------------------------------------HHHHHhHhhHHhhhHHHHHH
Q 038550 143 LSLFSEMRLLGMKHDVVSFMGA--------------------------------------ISACANLAAIKQGKEIHGVT 184 (423)
Q Consensus 143 ~~~~~~m~~~~~~~~~~~~~~l--------------------------------------l~~~~~~~~~~~a~~~~~~~ 184 (423)
++.|++|.+.+ +.+...+..+ +..|.+.|++++|.++++.+
T Consensus 220 ~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 298 (597)
T 2xpi_A 220 KECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298 (597)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh
Confidence 99999999864 2233333322 44566789999999999998
Q ss_pred HHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH
Q 038550 185 IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261 (423)
Q Consensus 185 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 261 (423)
.+. +++..++..++.+|.+.|++++|..+|+++. +.+..+++.++.++.+.|++++|..+++++.+.. +.+..+
T Consensus 299 ~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 375 (597)
T 2xpi_A 299 NGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVT 375 (597)
T ss_dssp TTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHH
T ss_pred hcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHH
Confidence 876 5789999999999999999999999999885 4478899999999999999999999999998753 447889
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhc
Q 038550 262 YIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIY 339 (423)
Q Consensus 262 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~ 339 (423)
+..++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++ ...| +..+|..++.+|.+.
T Consensus 376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 454 (597)
T 2xpi_A 376 WLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQL 454 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 9999999999999999999999999864 456889999999999999999999999988 3344 788999999999999
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 340 GNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 340 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
|++++|..+|+++.+..|.++.+|..++.+|.+.|++++|+++++++.+.
T Consensus 455 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 455 GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999876
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-30 Score=234.89 Aligned_cols=365 Identities=12% Similarity=0.010 Sum_probs=207.9
Q ss_pred ccCCcchhHHhhcccCC--c-ChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHH
Q 038550 4 KSSRPAEASYLFHNIAE--K-NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEI 80 (423)
Q Consensus 4 ~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 80 (423)
+.|++++|++.++.+.+ | +...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++|...
T Consensus 11 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 89 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 45666666666655543 2 33445555555666666666666666655432 33445666666666666666666666
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCC
Q 038550 81 HARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH 156 (423)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 156 (423)
|+++++.. +.+..+|..+..++.+.|++++|.+.| ...+.+...+..+...+...|++++|.+.|+++.+.. +.
T Consensus 90 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 167 (388)
T 1w3b_A 90 YRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PN 167 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC
Confidence 66666553 333445666666666666666666666 2223344455556666666666666666666665542 33
Q ss_pred chhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHH
Q 038550 157 DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILG 233 (423)
Q Consensus 157 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~ 233 (423)
+..++..+...+...|++++|...++++.+.++ .+...+..+...+...|++++|...|++.. +.+..++..+...
T Consensus 168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 246 (388)
T 1w3b_A 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV 246 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHH
Confidence 445566666666666666666666666665443 234445555556666666666666555433 2344555556666
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 038550 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313 (423)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 313 (423)
+...|++++|...|+++.+... .+..++..+..++.+.|++++|...++++.+.. +.+..++..+...+.+.|++++|
T Consensus 247 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 247 YYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 6666666666666666655421 134555556666666666666666666665542 34555555666666666666666
Q ss_pred HHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 038550 314 VKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAG 374 (423)
Q Consensus 314 ~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 374 (423)
...++++ ...| +..++..+...+.+.|++++|...++++.+..|.++..+..++..+...|
T Consensus 325 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 6666555 3333 34555556666666666666666666666666666655655555554443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-32 Score=250.65 Aligned_cols=211 Identities=12% Similarity=0.076 Sum_probs=160.5
Q ss_pred HHHHHHhhchhCCCCCCch-hHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHhchh
Q 038550 41 KALQLVREMPIHNEFPNSV-TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNIS 119 (423)
Q Consensus 41 ~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 119 (423)
.+..+.+.+.+.++.+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 4555667777777665543 58888999999999999999999999999999999999999998887764432
Q ss_pred cCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHH
Q 038550 120 FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSI 199 (423)
Q Consensus 120 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 199 (423)
.+.+.++.|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+++
T Consensus 81 --------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~l 146 (501)
T 4g26_A 81 --------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPA 146 (501)
T ss_dssp --------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred --------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHH
Confidence 234567889999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHhcCCHHHHHHHhccCC----CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 038550 200 LDFYTRSGRIDLANKIFDCLP----VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272 (423)
Q Consensus 200 ~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 272 (423)
|.+|++.|++++|.++|++|. .||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..++..
T Consensus 147 I~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 147 LFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 888777777777777777664 4677777777777777777777777777777777777777777777666553
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-29 Score=229.62 Aligned_cols=365 Identities=12% Similarity=0.016 Sum_probs=314.2
Q ss_pred HHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 038550 29 MVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC 108 (423)
Q Consensus 29 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 108 (423)
+...+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++..++.. +.+..+|..+..++.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3556788999999999999988753 2344566677778889999999999999998875 6678899999999999999
Q ss_pred hHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHH
Q 038550 109 LNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184 (423)
Q Consensus 109 ~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 184 (423)
+++|...| ...+.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999 3345566789999999999999999999999999864 334556777888888999999999999999
Q ss_pred HHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH
Q 038550 185 IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261 (423)
Q Consensus 185 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 261 (423)
.+..+ .+..++..+...+.+.|++++|...|+++. +.+...|..+...+...|++++|...+++...... .+..+
T Consensus 162 l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~ 239 (388)
T 1w3b_A 162 IETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVV 239 (388)
T ss_dssp HHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHH
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHH
Confidence 98753 346788889999999999999999999875 44677899999999999999999999999988632 26788
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CC-CCCHhHHHHHHHHHHhc
Q 038550 262 YIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PV-EPDANIWGALLGACRIY 339 (423)
Q Consensus 262 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~ 339 (423)
+..+..++...|++++|...++++.+.. +.+..+|..+..++.+.|++++|.+.|+++ .. ..+..++..+...+...
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 9999999999999999999999999864 445778999999999999999999999988 33 44788999999999999
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCCCCcccc
Q 038550 340 GNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQ 401 (423)
Q Consensus 340 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 401 (423)
|++++|...++++.+..|+++.++..++.+|.+.|++++|+..++++.+. .|+....|..
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~ 378 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSN 378 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHh
Confidence 99999999999999999999999999999999999999999999999874 4554444433
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=238.26 Aligned_cols=184 Identities=10% Similarity=0.028 Sum_probs=174.4
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCC---------CccHHHHHHHHHHcCCCCch
Q 038550 23 IVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF---------LRPGKEIHARIIRKGLNFDL 93 (423)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~ 93 (423)
...++.+|++|++.|++++|+++|++|.+.|++||..+|+++|.+|++.+. ++.|.++|++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346889999999999999999999999999999999999999999988765 46789999999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHh-c----hhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 038550 94 FLTNALTDMYAKCGCLNLAQNVF-N----ISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISAC 168 (423)
Q Consensus 94 ~~~~~l~~~~~~~g~~~~a~~~~-~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 168 (423)
.+|++||.+|++.|++++|.++| + ...||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999 2 346899999999999999999999999999999999999999999999999
Q ss_pred HhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhc
Q 038550 169 ANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS 206 (423)
Q Consensus 169 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 206 (423)
++.|++++|.+++++|.+.+..|+..||+.++..|+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999998864
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.9e-26 Score=211.39 Aligned_cols=383 Identities=11% Similarity=-0.024 Sum_probs=298.9
Q ss_pred ccccCCcchhHHhhcccCC--cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHH
Q 038550 2 YAKSSRPAEASYLFHNIAE--KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKE 79 (423)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 79 (423)
|.+.|++++|+..|+++.+ |+..+|..+..++.+.|++++|.+.++++.+.+ +.+..++..+..++.+.|++++|..
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 94 (514)
T 2gw1_A 16 FFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMF 94 (514)
T ss_dssp HHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4567888888888888765 777788888888888888888888888887754 2345677778888888888888888
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh--------------------------------------chh--
Q 038550 80 IHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF--------------------------------------NIS-- 119 (423)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~--------------------------------------~~~-- 119 (423)
.|+.+...+ +++......++..+........+.+.+ ...
T Consensus 95 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (514)
T 2gw1_A 95 DLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKP 173 (514)
T ss_dssp HHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCC
T ss_pred HHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCH
Confidence 888887776 334333333333333221111111111 000
Q ss_pred ---------cCCcchHHHHHHHHhc---CCChhhHHHHHHHHHh-----cCC--------CCchhhHHHHHHHHHhHhhH
Q 038550 120 ---------FRDEVSYNILIVGYSQ---TSDCSESLSLFSEMRL-----LGM--------KHDVVSFMGAISACANLAAI 174 (423)
Q Consensus 120 ---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~~~--------~~~~~~~~~ll~~~~~~~~~ 174 (423)
+.+...+..+...+.. .|++++|+..|+++.+ ... +.+..++..+...+...|++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (514)
T 2gw1_A 174 ELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP 253 (514)
T ss_dssp CCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCH
Confidence 1113334444444444 8999999999999987 311 22345777888889999999
Q ss_pred HhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 038550 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMR 251 (423)
Q Consensus 175 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 251 (423)
++|...++.+.+..+. ...+..+..++...|++++|...++.+. +.+..++..+...+...|++++|...++++.
T Consensus 254 ~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 331 (514)
T 2gw1_A 254 LGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAK 331 (514)
T ss_dssp HHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999988765 7888889999999999999999998765 3467889999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CC---CCC--
Q 038550 252 EDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PV---EPD-- 325 (423)
Q Consensus 252 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~---~~~-- 325 (423)
+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++ .. .++
T Consensus 332 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 409 (514)
T 2gw1_A 332 ELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY 409 (514)
T ss_dssp HTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS
T ss_pred HhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH
Confidence 86433 56788899999999999999999999999863 446778889999999999999999999887 22 222
Q ss_pred --HhHHHHHHHHHHh---cCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 326 --ANIWGALLGACRI---YGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 326 --~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
...+..+...+.. .|++++|...++++.+..|.++.++..++.+|.+.|++++|...+++..+..
T Consensus 410 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 410 VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 3488889999999 9999999999999999999999999999999999999999999999998754
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-24 Score=197.39 Aligned_cols=297 Identities=8% Similarity=-0.046 Sum_probs=193.8
Q ss_pred cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHH
Q 038550 21 KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALT 100 (423)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 100 (423)
.+...|..+...+.+.|++++|+++|+++.+.. +.+..++..+..++...|++++|...++++++.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 356678888888888899999999988887653 3467788888888888888888888888888775 44577788888
Q ss_pred HHHHhcCChHHHHHHh-ch---hcCCc---chHHHH------------HHHHhcCCChhhHHHHHHHHHhcCCCCchhhH
Q 038550 101 DMYAKCGCLNLAQNVF-NI---SFRDE---VSYNIL------------IVGYSQTSDCSESLSLFSEMRLLGMKHDVVSF 161 (423)
Q Consensus 101 ~~~~~~g~~~~a~~~~-~~---~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 161 (423)
.+|.+.|++++|...| .. .+.+. ..+..+ ...+...|++++|+..|+++.+.. +.+..++
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 8888888888888888 22 22233 444444 333677777777777777777653 4456667
Q ss_pred HHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHH--------
Q 038550 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTL-------- 230 (423)
Q Consensus 162 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l-------- 230 (423)
..+..++...|++++|...++.+.+..+ .+..++..+..+|...|++++|...|+++. +.+...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 7777777777777777777777766532 335556666666666677666666666553 2233333333
Q ss_pred ----HHHHhccCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038550 231 ----ILGYGMLGEVDTAINLFEAMREDGVGYD-----PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301 (423)
Q Consensus 231 ----i~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 301 (423)
...+...|++++|...|+++.+. .|+ ...+..+..++.+.|++++|...++++.... +.+...|..+.
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~ 336 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 55556666666666666666553 222 2345555556666666666666666655542 33455566666
Q ss_pred HHHHhcCChHHHHHHHhhC-CCCC
Q 038550 302 DLLGRAGLMEDAVKLIKNL-PVEP 324 (423)
Q Consensus 302 ~~~~~~~~~~~a~~~~~~~-~~~~ 324 (423)
.+|...|++++|...|+++ .+.|
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCc
Confidence 6666666666666666655 4444
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-24 Score=197.51 Aligned_cols=339 Identities=7% Similarity=-0.020 Sum_probs=274.0
Q ss_pred HHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----
Q 038550 41 KALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF---- 116 (423)
Q Consensus 41 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~---- 116 (423)
.+...+....... +.+...+..+...+.+.|++++|..+|+.+++.. +.+..++..+..++...|++++|...|
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444445554432 3466788899999999999999999999999875 567889999999999999999999999
Q ss_pred chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCch---hhHHHH------------HHHHHhHhhHHhhhHHH
Q 038550 117 NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV---VSFMGA------------ISACANLAAIKQGKEIH 181 (423)
Q Consensus 117 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~l------------l~~~~~~~~~~~a~~~~ 181 (423)
+..+.+..++..+..+|.+.|++++|...|+++.+.. +.+. ..+..+ ...+...|++++|...+
T Consensus 88 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 88 QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3445677889999999999999999999999999854 3333 455544 44488899999999999
Q ss_pred HHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC
Q 038550 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD 258 (423)
Q Consensus 182 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 258 (423)
+.+.+..+ .+...+..+..+|.+.|++++|...|+++. +.+..+|..+...|...|++++|...|+++.+... .+
T Consensus 167 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~ 244 (450)
T 2y4t_A 167 DKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DH 244 (450)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-Ch
Confidence 99988654 457778889999999999999999999875 45788999999999999999999999999987632 24
Q ss_pred HHHHHHH------------HHHHhccCcHHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHhhC-
Q 038550 259 PVSYIAI------------LTACSHGGLVEKGKKYFDEMQADSVKPT-----EMHYACMVDLLGRAGLMEDAVKLIKNL- 320 (423)
Q Consensus 259 ~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~- 320 (423)
...+..+ ...|...|++++|...|+++.+. .|+ ...+..+..++.+.|++++|+..++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 245 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4445444 78899999999999999999986 344 447888899999999999999999987
Q ss_pred CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHH------------HHhcC-----ChhHHHHH
Q 038550 321 PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNM------------YAEAG-----KWDEASKV 382 (423)
Q Consensus 321 ~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-----~~~~A~~~ 382 (423)
...| +...|..+..+|...|++++|...++++.+..|.++.++..+..+ |...| +.+++.+.
T Consensus 323 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~ 402 (450)
T 2y4t_A 323 QMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKA 402 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHH
T ss_pred HhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHH
Confidence 4455 688999999999999999999999999999999999998888743 44444 55667777
Q ss_pred HHHH
Q 038550 383 RELM 386 (423)
Q Consensus 383 ~~~m 386 (423)
++++
T Consensus 403 y~~~ 406 (450)
T 2y4t_A 403 YRKL 406 (450)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7763
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.6e-25 Score=204.66 Aligned_cols=360 Identities=10% Similarity=-0.081 Sum_probs=279.8
Q ss_pred ccccCCcchhHHhhcccCC---cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHH
Q 038550 2 YAKSSRPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGK 78 (423)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 78 (423)
|.+.|++++|+..|+++.+ .+..+|..+..++...|++++|...|+++...+. ++......++..+........+.
T Consensus 49 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 127 (514)
T 2gw1_A 49 YVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLK 127 (514)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHH
Confidence 4578999999999998765 4567899999999999999999999999988753 34444433333332211111111
Q ss_pred -----------------------------------HHHHHHHHcCC---------CCchHHHHHHHHHHHh---cCChHH
Q 038550 79 -----------------------------------EIHARIIRKGL---------NFDLFLTNALTDMYAK---CGCLNL 111 (423)
Q Consensus 79 -----------------------------------~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~g~~~~ 111 (423)
.+...+..... +.+...+..+...+.. .|++++
T Consensus 128 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (514)
T 2gw1_A 128 EKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDK 207 (514)
T ss_dssp TC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHH
T ss_pred HHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHH
Confidence 11111111100 1124444445555554 899999
Q ss_pred HHHHh-ch-------h----------cCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhh
Q 038550 112 AQNVF-NI-------S----------FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA 173 (423)
Q Consensus 112 a~~~~-~~-------~----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 173 (423)
|...| +. . +.+..++..+...+...|++++|...++++.+.. |+...+..+...+...|+
T Consensus 208 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~ 285 (514)
T 2gw1_A 208 ADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRND 285 (514)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCC
Confidence 99999 21 1 2345678889999999999999999999999865 347788899999999999
Q ss_pred HHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 038550 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAM 250 (423)
Q Consensus 174 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 250 (423)
+++|...++.+.+..+ .+...+..+..++...|++++|...|+++. +.+...+..+...+...|++++|...++++
T Consensus 286 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 364 (514)
T 2gw1_A 286 STEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEA 364 (514)
T ss_dssp CTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999988654 346678889999999999999999998764 446788999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHh---cCChHHHHHHHhhC-C
Q 038550 251 REDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV-KPT----EMHYACMVDLLGR---AGLMEDAVKLIKNL-P 321 (423)
Q Consensus 251 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~-~ 321 (423)
.+.. +.+...+..+...+...|++++|...++++..... .++ ...+..+...+.. .|++++|...++++ .
T Consensus 365 ~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 365 KRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp HHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred HHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 8863 23567888999999999999999999999987621 122 3378889999999 99999999999987 3
Q ss_pred CCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 038550 322 VEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILL 366 (423)
Q Consensus 322 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 366 (423)
..| +..++..+...+...|++++|...++++.+..|.++..+..+
T Consensus 444 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 444 LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 344 677889999999999999999999999999999988877665
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-24 Score=202.30 Aligned_cols=362 Identities=11% Similarity=-0.019 Sum_probs=271.9
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHH
Q 038550 23 IVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDM 102 (423)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 102 (423)
...|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++.+.|++++|.+.++++++.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4456666666777777777777777766643 2355566666666777777777777777776664 4455666666777
Q ss_pred HHhcCChHHHHHHhchhcCC------------------------------------------------------------
Q 038550 103 YAKCGCLNLAQNVFNISFRD------------------------------------------------------------ 122 (423)
Q Consensus 103 ~~~~g~~~~a~~~~~~~~~~------------------------------------------------------------ 122 (423)
+...|++++|...|+....+
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 77777777776665211000
Q ss_pred --------cc---hHHHHHHHHhcC--------CChhhHHHHHHHHHhcCCCCch-------hhHHHHHHHHHhHhhHHh
Q 038550 123 --------EV---SYNILIVGYSQT--------SDCSESLSLFSEMRLLGMKHDV-------VSFMGAISACANLAAIKQ 176 (423)
Q Consensus 123 --------~~---~~~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~~~~~~ 176 (423)
.. ....+...+... +++++|..+++++.+.. +.+. .++..+...+...|++++
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 00 122222222222 47889999999998754 2232 246666677788899999
Q ss_pred hhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 038550 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253 (423)
Q Consensus 177 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 253 (423)
|...++.+.+..+. ...+..+...+...|++++|...|+++. +.+..+|..+...+...|++++|...++++.+.
T Consensus 262 A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 262 AQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 99999999987644 7778889999999999999999998765 456788999999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-C-------CCCC
Q 038550 254 GVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-P-------VEPD 325 (423)
Q Consensus 254 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~-------~~~~ 325 (423)
.. .+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++ . ....
T Consensus 340 ~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 340 NP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp CT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 43 256788899999999999999999999999874 456778899999999999999999999886 1 1112
Q ss_pred HhHHHHHHHHHHhc----------CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 326 ANIWGALLGACRIY----------GNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 326 ~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
...+..+...+... |++++|...++++.+..|.++.++..++.+|.+.|++++|.+.+++..+...
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 23344555667777 9999999999999999999999999999999999999999999999987653
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.5e-21 Score=169.86 Aligned_cols=305 Identities=12% Similarity=-0.022 Sum_probs=183.2
Q ss_pred CchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHH
Q 038550 57 NSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVG 132 (423)
Q Consensus 57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~ 132 (423)
+...+..+...+...|++++|...|+.+++.. +.+..++..+..++...|++++|...| +..+.+...|..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 34566777778888888888888888888765 446777888888888888888888888 3334466778888888
Q ss_pred HhcCCChhhHHHHHHHHHhcCCCC----chhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCC
Q 038550 133 YSQTSDCSESLSLFSEMRLLGMKH----DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208 (423)
Q Consensus 133 ~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 208 (423)
+...|++++|...+++..+. .| +...+..+..... ...+..+...+...|+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence 88888888888888888764 34 2333333311000 0001123344555555
Q ss_pred HHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 038550 209 IDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285 (423)
Q Consensus 209 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 285 (423)
+++|...++++. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555443 2344555555566666666666666666655542 224555556666666666666666666666
Q ss_pred HHcCCCCChhhHH------------HHHHHHHhcCChHHHHHHHhhC-CCCCC-H----hHHHHHHHHHHhcCChhHHHH
Q 038550 286 QADSVKPTEMHYA------------CMVDLLGRAGLMEDAVKLIKNL-PVEPD-A----NIWGALLGACRIYGNVELGAW 347 (423)
Q Consensus 286 ~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~-~~~~~-~----~~~~~l~~~~~~~~~~~~a~~ 347 (423)
.+.. +.+...+. .+...+.+.|++++|...++++ ...|+ . ..+..+...+...|++++|..
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 5542 22222222 1244456666666666666655 22232 2 123344556666666666666
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 348 AAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 348 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
.++++.+..|.++.++..++.+|...|++++|...+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 666666666666666666666666666666666666666553
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=7e-21 Score=169.66 Aligned_cols=323 Identities=8% Similarity=-0.020 Sum_probs=226.0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHH
Q 038550 22 NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTD 101 (423)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 101 (423)
|+..+..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 46678889999999999999999999998864 3467788999999999999999999999999875 446788999999
Q ss_pred HHHhcCChHHHHHHh-chh---c---CCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhH
Q 038550 102 MYAKCGCLNLAQNVF-NIS---F---RDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174 (423)
Q Consensus 102 ~~~~~g~~~~a~~~~-~~~---~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 174 (423)
++...|++++|...| ... + .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 999999999999999 222 2 23334444321100 01122233334444444
Q ss_pred HhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 038550 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMR 251 (423)
Q Consensus 175 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 251 (423)
++|...++.+.+..+ .+...+..+..++...|++++|...++++. +.+..++..+...+...|++++|...+++..
T Consensus 137 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444322 223344445555555555555555555432 2345566666667777777777777777766
Q ss_pred HcCCCCCHHHHH------------HHHHHHhccCcHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHH
Q 038550 252 EDGVGYDPVSYI------------AILTACSHGGLVEKGKKYFDEMQADSVKPTE----MHYACMVDLLGRAGLMEDAVK 315 (423)
Q Consensus 252 ~~~~~p~~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~ 315 (423)
+... .+...+. .+...+.+.|++++|...++++.+.. +.+. ..+..+..++...|++++|..
T Consensus 216 ~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 6432 1223222 33566888999999999999988863 2222 234457788899999999999
Q ss_pred HHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038550 316 LIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAE 372 (423)
Q Consensus 316 ~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 372 (423)
.+++. ...| +..++..+...+...|++++|...++++.+..|.++.++..+..+...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 99887 3345 778899999999999999999999999999999998888888766543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-21 Score=184.78 Aligned_cols=358 Identities=11% Similarity=-0.008 Sum_probs=280.4
Q ss_pred ccccCCcchhHHhhcccCC---cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHH
Q 038550 2 YAKSSRPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGK 78 (423)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 78 (423)
|.+.|++++|+..|+++.+ .+..+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+..++...|++++|.
T Consensus 35 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~ 113 (537)
T 3fp2_A 35 FFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAM 113 (537)
T ss_dssp HHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 4578999999999999865 478899999999999999999999999998864 346678889999999999999999
Q ss_pred HHHHHHHHcCCC-------------------------------------CchH---------------------------
Q 038550 79 EIHARIIRKGLN-------------------------------------FDLF--------------------------- 94 (423)
Q Consensus 79 ~~~~~~~~~~~~-------------------------------------~~~~--------------------------- 94 (423)
..|+.+ ..... |+..
T Consensus 114 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (537)
T 3fp2_A 114 FDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTA 192 (537)
T ss_dssp HHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSS
T ss_pred HHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccH
Confidence 998633 21111 1000
Q ss_pred ---HHHHHHHHHH--------hcCChHHHHHHh-c---hhcCCc-------chHHHHHHHHhcCCChhhHHHHHHHHHhc
Q 038550 95 ---LTNALTDMYA--------KCGCLNLAQNVF-N---ISFRDE-------VSYNILIVGYSQTSDCSESLSLFSEMRLL 152 (423)
Q Consensus 95 ---~~~~l~~~~~--------~~g~~~~a~~~~-~---~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 152 (423)
....+...+. ..|++++|..+| . ..+.+. .++..+...+...|++++|...+++..+.
T Consensus 193 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~ 272 (537)
T 3fp2_A 193 YALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL 272 (537)
T ss_dssp HHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 1111111111 124788888888 2 223332 24677778899999999999999999985
Q ss_pred CCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHH
Q 038550 153 GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNT 229 (423)
Q Consensus 153 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ 229 (423)
.|+..++..+...+...|++++|...++.+.+..+ .+..++..+...+...|++++|...|+++. +.+...+..
T Consensus 273 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 349 (537)
T 3fp2_A 273 --HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQ 349 (537)
T ss_dssp --CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHH
T ss_pred --CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 46678888899999999999999999999998764 356778889999999999999999998775 446788999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-CC----ChhhHHHHHHHH
Q 038550 230 LILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV-KP----TEMHYACMVDLL 304 (423)
Q Consensus 230 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~ 304 (423)
+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+ ....+..+...+
T Consensus 350 la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~ 428 (537)
T 3fp2_A 350 LACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATIL 428 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHH
Confidence 9999999999999999999998874 33567889999999999999999999999887621 11 112234445677
Q ss_pred Hhc----------CChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHH
Q 038550 305 GRA----------GLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYIL 365 (423)
Q Consensus 305 ~~~----------~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 365 (423)
... |++++|...|+++ ...| +...+..+...+...|++++|...++++.+..|.++.....
T Consensus 429 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 429 ARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 777 9999999999988 3344 67889999999999999999999999999999988766443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=9e-20 Score=160.55 Aligned_cols=286 Identities=12% Similarity=0.026 Sum_probs=163.6
Q ss_pred CCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHH
Q 038550 56 PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIV 131 (423)
Q Consensus 56 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~ 131 (423)
.+...+..+...+...|++++|..+++++.+.. +.+...+..++.++...|++++|...+ +..+.+...|..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 344445555555555555555555555555443 223334444445555555555555555 222334555666666
Q ss_pred HHhcCC-ChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHH
Q 038550 132 GYSQTS-DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRID 210 (423)
Q Consensus 132 ~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 210 (423)
.+...| ++++|...|++..+.. +.+...+..+...+...|++++|...++.+.+....
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------------------- 157 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-------------------- 157 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT--------------------
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc--------------------
Confidence 666666 6666666666666543 334455666666666666666666666665554322
Q ss_pred HHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC-
Q 038550 211 LANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS- 289 (423)
Q Consensus 211 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~- 289 (423)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 158 ------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 224 (330)
T 3hym_B 158 ------------CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224 (330)
T ss_dssp ------------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh
Confidence 22333334445555555555555555555542 2244556666666666666666666666655431
Q ss_pred -------CCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 038550 290 -------VKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 290 -------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 360 (423)
.+....++..+..+|...|++++|...+++. ...| +...+..+...+...|++++|...++++.+..|.++
T Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 304 (330)
T 3hym_B 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT 304 (330)
T ss_dssp TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCH
T ss_pred hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCch
Confidence 1223456666666677777777777766665 2223 455666777777777777777777777777777777
Q ss_pred chHHHHHHHH-HhcCCh
Q 038550 361 GYYILLSNMY-AEAGKW 376 (423)
Q Consensus 361 ~~~~~l~~~~-~~~g~~ 376 (423)
..+..++.++ ...|+.
T Consensus 305 ~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 305 FSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHHhCch
Confidence 7777777766 344443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-20 Score=165.43 Aligned_cols=352 Identities=10% Similarity=0.011 Sum_probs=167.0
Q ss_pred cccCCcchhHHhhcccCCcChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHH
Q 038550 3 AKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHA 82 (423)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 82 (423)
-+.|++++|..+++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4678999999999999655 59999999999999999999999652 578899999999999999999999888
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHH
Q 038550 83 RIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFM 162 (423)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 162 (423)
...+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.++..|...|.+++|...|..+ ..|.
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~--pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING--PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp -------------------------CHHHHTTTTTC--C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 77664 55678899999999999999999999954 56679999999999999999999999977 4899
Q ss_pred HHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHH
Q 038550 163 GAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDT 242 (423)
Q Consensus 163 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 242 (423)
.++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 9999999999999999999988 367899999999999999999988887765 455556678999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc-CCCC------ChhhHHHHHHHHHhcCChHHHHH
Q 038550 243 AINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKP------TEMHYACMVDLLGRAGLMEDAVK 315 (423)
Q Consensus 243 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~~~~~~a~~ 315 (423)
|..+++...... +-....|+-+.-+|++- ++++..+.++....+ +++| +...|..+.-.|...++++.|..
T Consensus 226 ai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 226 LITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 999999988654 44566777776666654 344444444433333 4444 46789999999999999999987
Q ss_pred HHhhC-CCC-------------CCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHH
Q 038550 316 LIKNL-PVE-------------PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASK 381 (423)
Q Consensus 316 ~~~~~-~~~-------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 381 (423)
.+-+- ... .+..+|-..+..|. +....++.-+..+....-+ ....+..+.+.|...-+..
T Consensus 304 tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld----~~r~v~~~~~~~~l~l~~~ 377 (449)
T 1b89_A 304 TMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLD----HTRAVNYFSKVKQLPLVKP 377 (449)
T ss_dssp HHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCC----HHHHHHHHHHTTCTTTTHH
T ss_pred HHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccC----cHHHHHHHHHcCCcHHHHH
Confidence 65443 221 23334444444443 1112222222222211111 2344455566666666666
Q ss_pred HHHHHHhcc
Q 038550 382 VRELMKSRE 390 (423)
Q Consensus 382 ~~~~m~~~~ 390 (423)
++..+.+.+
T Consensus 378 yl~~v~~~n 386 (449)
T 1b89_A 378 YLRSVQNHN 386 (449)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHhh
Confidence 666665544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-19 Score=159.78 Aligned_cols=280 Identities=10% Similarity=0.020 Sum_probs=233.3
Q ss_pred chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHH
Q 038550 117 NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVA 196 (423)
Q Consensus 117 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 196 (423)
...+.+...+..++..+...|++++|+++++++.+.. +.+...+..++.++...|++++|...++.+.+..+ .+...+
T Consensus 16 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 93 (330)
T 3hym_B 16 DGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSW 93 (330)
T ss_dssp ----CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHH
T ss_pred hhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHH
Confidence 3345577778888888889999999999999998764 45566777788888999999999999999988654 346677
Q ss_pred HHHHHHHHhcC-CHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 038550 197 NSILDFYTRSG-RIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272 (423)
Q Consensus 197 ~~l~~~~~~~~-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 272 (423)
..+...+...| ++++|...|++.. +.+...|..+...+...|++++|...++++.+.... +...+..+...+...
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence 78888999999 9999999998765 346778999999999999999999999999886432 456777789999999
Q ss_pred CcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CC----------CCCHhHHHHHHHHHHhcCC
Q 038550 273 GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PV----------EPDANIWGALLGACRIYGN 341 (423)
Q Consensus 273 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~----------~~~~~~~~~l~~~~~~~~~ 341 (423)
|++++|...++++.+.. +.+...+..+...+...|++++|...++++ .. ..+..++..+...+...|+
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 99999999999999864 556788999999999999999999999876 11 2345788999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCCCCccccc
Q 038550 342 VELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQT 402 (423)
Q Consensus 342 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 402 (423)
+++|...++++.+..|.++.++..++.+|...|++++|...+++..+. .|+....|..+
T Consensus 252 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 310 (330)
T 3hym_B 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTML 310 (330)
T ss_dssp HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHH
Confidence 999999999999999999999999999999999999999999998764 35544444433
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-19 Score=161.29 Aligned_cols=283 Identities=12% Similarity=-0.018 Sum_probs=183.5
Q ss_pred HHhCCChHHHHH-HHhhchhCCC---CCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 038550 33 FAQNRLELKALQ-LVREMPIHNE---FPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC 108 (423)
Q Consensus 33 ~~~~~~~~~a~~-~~~~m~~~~~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 108 (423)
+.-.|++++|++ .+++...... ..+...+..+...+.+.|++++|...++++++.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445588899998 8887665421 1145678888899999999999999999999875 5577888999999999999
Q ss_pred hHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHH---------------HHHHHH
Q 038550 109 LNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMG---------------AISACA 169 (423)
Q Consensus 109 ~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---------------ll~~~~ 169 (423)
+++|...| +..+.+..++..+...+...|++++|+..++++.... +.+...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 99999999 3445677889999999999999999999999998864 222222221 233334
Q ss_pred hHhhHHhhhHHHHHHHHhccCc-chHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHH
Q 038550 170 NLAAIKQGKEIHGVTIRKHLHT-HLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAIN 245 (423)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~ 245 (423)
..|++++|...++.+.+..+.. +..++..+..+|.+.|++++|...|+++. +.+..+|..+...+...|++++|..
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 7788888888888877765432 35566666666666777776666666543 2345566666666666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC----------ChhhHHHHHHHHHhcCChHHHHH
Q 038550 246 LFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP----------TEMHYACMVDLLGRAGLMEDAVK 315 (423)
Q Consensus 246 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~ 315 (423)
.++++.+.. +.+...+..+..+|.+.|++++|...++++.+..... ...+|..+..+|...|++++|..
T Consensus 273 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 273 AYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 666665542 2245566666666666666666666666665542100 13455555555555555555555
Q ss_pred HHh
Q 038550 316 LIK 318 (423)
Q Consensus 316 ~~~ 318 (423)
+++
T Consensus 352 ~~~ 354 (368)
T 1fch_A 352 ADA 354 (368)
T ss_dssp HHT
T ss_pred hHH
Confidence 544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7.2e-20 Score=163.89 Aligned_cols=262 Identities=10% Similarity=-0.051 Sum_probs=200.8
Q ss_pred cchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHH
Q 038550 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF 202 (423)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (423)
...+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++.+.+..+ .+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~ 141 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVS 141 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 4456667777777777777777777777653 44555666677777777777777777777766543 345566667777
Q ss_pred HHhcCCHHHHHHHhccCCC---CChhhHHH---------------HHHHHhccCCHHHHHHHHHHHHHcCCCC-CHHHHH
Q 038550 203 YTRSGRIDLANKIFDCLPV---KDSASWNT---------------LILGYGMLGEVDTAINLFEAMREDGVGY-DPVSYI 263 (423)
Q Consensus 203 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~---------------li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~ 263 (423)
|...|++++|...++++.. .+...+.. .+..+...|++++|...++++.+..... +..++.
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 221 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 221 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence 7777777777777765431 12222211 1333348899999999999998864321 578899
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCC
Q 038550 264 AILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGN 341 (423)
Q Consensus 264 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~ 341 (423)
.+...+...|++++|...++++.... +.+..++..+...+...|++++|...|+++ ...| +...+..+...+...|+
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999874 456788999999999999999999999987 4444 67889999999999999
Q ss_pred hhHHHHHHHHHHhcCCCC-----------cchHHHHHHHHHhcCChhHHHHHHHHHH
Q 038550 342 VELGAWAAEHLFMLKPQH-----------CGYYILLSNMYAEAGKWDEASKVRELMK 387 (423)
Q Consensus 342 ~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 387 (423)
+++|...++++.+..|.+ ..+|..++.+|...|++++|..++++-.
T Consensus 301 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 301 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 999999999999988877 7889999999999999999999887443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-17 Score=155.72 Aligned_cols=360 Identities=11% Similarity=-0.019 Sum_probs=297.7
Q ss_pred HHhhcccC-CcChhhHHHHHHHHHh----CCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhc----CCCCccHHHHHH
Q 038550 12 SYLFHNIA-EKNIVSWNAMVANFAQ----NRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR----GHFLRPGKEIHA 82 (423)
Q Consensus 12 ~~~~~~~~-~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~ 82 (423)
...++... ..+..++..+...|.. .+++++|++.|++..+.| +...+..+...+.. .+++++|...|+
T Consensus 27 ~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 44444432 3578888888888888 899999999999998875 66788888888888 899999999999
Q ss_pred HHHHcCCCCchHHHHHHHHHHHh----cCChHHHHHHh--chhcCCcchHHHHHHHHhc----CCChhhHHHHHHHHHhc
Q 038550 83 RIIRKGLNFDLFLTNALTDMYAK----CGCLNLAQNVF--NISFRDEVSYNILIVGYSQ----TSDCSESLSLFSEMRLL 152 (423)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~--~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~ 152 (423)
+..+.| ++..+..|...|.. .+++++|...| .....+..++..|...|.. .+++++|++.|++..+.
T Consensus 104 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 104 KAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 998876 56677778888888 78999999999 2234567788888888887 78999999999999886
Q ss_pred CCCCchhhHHHHHHHHHh----HhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHh----cCCHHHHHHHhccCC-CCC
Q 038550 153 GMKHDVVSFMGAISACAN----LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR----SGRIDLANKIFDCLP-VKD 223 (423)
Q Consensus 153 ~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~ 223 (423)
| +...+..+...+.. .++.++|...+++..+.+ +...+..+...|.. .+++++|..+|++.. ..+
T Consensus 181 ~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 254 (490)
T 2xm6_A 181 G---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN 254 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC
T ss_pred C---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 5 56777788888877 789999999999998875 34566677888876 889999999998765 346
Q ss_pred hhhHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHHHHcCCCCCh
Q 038550 224 SASWNTLILGYGM----LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG-----GLVEKGKKYFDEMQADSVKPTE 294 (423)
Q Consensus 224 ~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~ 294 (423)
...+..+...|.. .+++++|..+|++..+.| +...+..+...|... +++++|...|++..+.| +.
T Consensus 255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~ 328 (490)
T 2xm6_A 255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DA 328 (490)
T ss_dssp HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CH
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CH
Confidence 6777778888877 899999999999998764 556777787888776 89999999999999875 34
Q ss_pred hhHHHHHHHHHhcC---ChHHHHHHHhhCCCCCCHhHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 038550 295 MHYACMVDLLGRAG---LMEDAVKLIKNLPVEPDANIWGALLGACRI----YGNVELGAWAAEHLFMLKPQHCGYYILLS 367 (423)
Q Consensus 295 ~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 367 (423)
..+..+...|...| ++++|++.|++.-...++..+..|...|.. .+++++|...++++.+.+ ++.++..++
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg 406 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLG 406 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHH
Confidence 56777888887766 789999999988323578888889888888 899999999999998865 577889999
Q ss_pred HHHHh----cCChhHHHHHHHHHHhccc
Q 038550 368 NMYAE----AGKWDEASKVRELMKSREA 391 (423)
Q Consensus 368 ~~~~~----~g~~~~A~~~~~~m~~~~~ 391 (423)
..|.. .+++++|...|++..+.+.
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99998 8999999999999998874
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=7e-20 Score=163.86 Aligned_cols=261 Identities=9% Similarity=-0.051 Sum_probs=201.5
Q ss_pred CcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHH
Q 038550 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILD 201 (423)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 201 (423)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+..+ .+...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 44557777777777888888888888777754 44666777777777778888888888877777643 34566677777
Q ss_pred HHHhcCCHHHHHHHhccCCCC-------------ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 038550 202 FYTRSGRIDLANKIFDCLPVK-------------DSASWNTLILGYGMLGEVDTAINLFEAMREDGVG-YDPVSYIAILT 267 (423)
Q Consensus 202 ~~~~~~~~~~A~~~~~~~~~~-------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~ 267 (423)
+|...|++++|...|+++... ....+..+...+...|++++|...++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 788888888888877766421 1223445578889999999999999999886432 26789999999
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHH
Q 038550 268 ACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELG 345 (423)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a 345 (423)
.+...|++++|...++++.+.. +.+..+|..+..+|...|++++|+..|+++ ...| +..++..+...|...|++++|
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999874 556889999999999999999999999987 4455 578899999999999999999
Q ss_pred HHHHHHHHhcCCC------------CcchHHHHHHHHHhcCChhHHHHHHHH
Q 038550 346 AWAAEHLFMLKPQ------------HCGYYILLSNMYAEAGKWDEASKVREL 385 (423)
Q Consensus 346 ~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 385 (423)
...++++.+..|. +..+|..++.++...|+.+.+..+.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999998766 367789999999999999988887665
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-18 Score=161.63 Aligned_cols=367 Identities=11% Similarity=-0.033 Sum_probs=245.3
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHhhchhC-----C--CCC-CchhHHHHHHHhhcCCCCccHHHHHHHHHHcC-----
Q 038550 22 NIVSWNAMVANFAQNRLELKALQLVREMPIH-----N--EFP-NSVTLTNVLPACARGHFLRPGKEIHARIIRKG----- 88 (423)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~--~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 88 (423)
....||.|...+...|++++|++.|++..+. + ..| ...+|+.+..++...|++++|...+++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3567999999999999999999999887542 1 122 34688999999999999999999999887531
Q ss_pred -C-CCchHHHHHHHHHHHhc--CChHHHHHHh----chhcCCcchHHHHHHH---HhcCCChhhHHHHHHHHHhcCCCCc
Q 038550 89 -L-NFDLFLTNALTDMYAKC--GCLNLAQNVF----NISFRDEVSYNILIVG---YSQTSDCSESLSLFSEMRLLGMKHD 157 (423)
Q Consensus 89 -~-~~~~~~~~~l~~~~~~~--g~~~~a~~~~----~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~~~~~ 157 (423)
. .....++..+..++... +++++|+..| +..+.+...+..+..+ +...++.++|++.+++..+.. +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 1 12345666666565554 5789999999 3445566666666555 445678899999999988754 445
Q ss_pred hhhHHHHHHHHH----hHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHH
Q 038550 158 VVSFMGAISACA----NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTL 230 (423)
Q Consensus 158 ~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 230 (423)
...+..+...+. ..++.++|.+.+++.....+ .....+..+...|...|++++|...+++.. +.+..++..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence 556655555444 34678899999999887654 345667789999999999999999998765 3456667666
Q ss_pred HHHHhcc-------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC
Q 038550 231 ILGYGML-------------------GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK 291 (423)
Q Consensus 231 i~~~~~~-------------------g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 291 (423)
..+|... +.++.|...+++..+... .+..++..+...+...|++++|...|++..+....
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 6555321 235677778887776532 24567888888999999999999999999886433
Q ss_pred CChh--hHHHHHH-HHHhcCChHHHHHHHhhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 038550 292 PTEM--HYACMVD-LLGRAGLMEDAVKLIKNL-PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367 (423)
Q Consensus 292 ~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 367 (423)
+... .+..+.. .+...|+.++|+..|++. .+.|+...... ....+..++++..+.+|.++.++..++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG 437 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVLA 437 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2211 2222222 234678999999998876 56665443322 234556678888889999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhccccCCCCCccc
Q 038550 368 NMYAEAGKWDEASKVRELMKSREAKKNPGCSWV 400 (423)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 400 (423)
.+|...|++++|++.|++..+.+.....+.+|+
T Consensus 438 ~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 438 FLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHCC-----------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999999887666666665
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.6e-18 Score=158.20 Aligned_cols=362 Identities=10% Similarity=-0.020 Sum_probs=293.7
Q ss_pred cCCcchhHHhhcccCC-cChhhHHHHHHHHHh----CCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhc----CCCCc
Q 038550 5 SSRPAEASYLFHNIAE-KNIVSWNAMVANFAQ----NRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR----GHFLR 75 (423)
Q Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~ 75 (423)
.+++++|+..|+...+ .+..++..|...|.. .+++++|.+.|++..+.| +...+..+...+.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 6899999999988755 578889999999998 999999999999998876 66777788888877 78999
Q ss_pred cHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCChHHHHHHh--chhcCCcchHHHHHHHHhc----CCChhhHHHH
Q 038550 76 PGKEIHARIIRKGLNFDLFLTNALTDMYAK----CGCLNLAQNVF--NISFRDEVSYNILIVGYSQ----TSDCSESLSL 145 (423)
Q Consensus 76 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~--~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~ 145 (423)
+|...|++..+.| ++..+..|..+|.. .+++++|.+.| .....+..++..+...|.. .++.++|+..
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 9999999998876 56777788888887 78999999999 2234577888889999988 8999999999
Q ss_pred HHHHHhcCCCCchhhHHHHHHHHHh----HhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHh----cCCHHHHHHHhc
Q 038550 146 FSEMRLLGMKHDVVSFMGAISACAN----LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR----SGRIDLANKIFD 217 (423)
Q Consensus 146 ~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~ 217 (423)
|++..+.| +...+..+...+.. .+++++|...++...+.+. ...+..+...|.. .+++++|...|+
T Consensus 210 ~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 210 YRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN---SIAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 99998865 45667777777775 7899999999999887653 4455667777877 899999999998
Q ss_pred cCCC-CChhhHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHc
Q 038550 218 CLPV-KDSASWNTLILGYGML-----GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG---LVEKGKKYFDEMQAD 288 (423)
Q Consensus 218 ~~~~-~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~ 288 (423)
+..+ .+...+..+...|... +++++|..++++..+.| +...+..+...|...| +.++|...|++..+.
T Consensus 284 ~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 284 KSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 8764 4677888888888877 89999999999999875 5567777777777756 899999999999986
Q ss_pred CCCCChhhHHHHHHHHHh----cCChHHHHHHHhhCCCCCCHhHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCC--
Q 038550 289 SVKPTEMHYACMVDLLGR----AGLMEDAVKLIKNLPVEPDANIWGALLGACRI----YGNVELGAWAAEHLFMLKPQ-- 358 (423)
Q Consensus 289 ~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~-- 358 (423)
| +...+..|...|.. .+++++|.+.|++.-...++..+..|...|.. .++.++|...|+++.+.+|.
T Consensus 361 ~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 437 (490)
T 2xm6_A 361 G---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLF 437 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHH
T ss_pred C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCc
Confidence 4 56778888888988 89999999999988323467788888888888 89999999999999999854
Q ss_pred -CcchHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 359 -HCGYYILLSNMYAEAGKWDEASKVRELM 386 (423)
Q Consensus 359 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m 386 (423)
++.....++..+.. +.+.+.+..+++
T Consensus 438 ~~~~a~~~l~~~~~~--~~~~a~~~a~~~ 464 (490)
T 2xm6_A 438 GTENRNITEKKLTAK--QLQQAELLSQQY 464 (490)
T ss_dssp HHHHHHHHHTTSCHH--HHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCHh--HHHHHHHHHHHH
Confidence 66666666555443 233444333333
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.2e-19 Score=158.80 Aligned_cols=260 Identities=12% Similarity=-0.049 Sum_probs=171.5
Q ss_pred CCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHH
Q 038550 56 PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIV 131 (423)
Q Consensus 56 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~ 131 (423)
.+...+..+...+.+.|++++|...|+++++.. +.+..++..+..++...|++++|...| +..+.+..+|..+..
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 345668888888999999999999999998875 557788888999999999999999988 334566788888999
Q ss_pred HHhcCCChhhHHHHHHHHHhcCCCCc-hhh----------HHHHHHHHHhHhhHHhhhHHHHHHHHhccCc-chHHHHHH
Q 038550 132 GYSQTSDCSESLSLFSEMRLLGMKHD-VVS----------FMGAISACANLAAIKQGKEIHGVTIRKHLHT-HLFVANSI 199 (423)
Q Consensus 132 ~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~----------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 199 (423)
+|...|++++|+..++++.+.. |+ ... +..+...+...|++++|...++++.+..+.. +..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999888743 32 222 2234667777888888888888887765432 45566666
Q ss_pred HHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 038550 200 LDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVE 276 (423)
Q Consensus 200 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 276 (423)
...|...|++++|...|+++. +.+..+|..+..+|...|++++|...|+++.+.. +.+..++..+..+|...|+++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 666766777777666666543 3345566666666666666666666666666542 123556666666666666666
Q ss_pred HHHHHHHHHHHcCCC-----------CChhhHHHHHHHHHhcCChHHHHHHHhh
Q 038550 277 KGKKYFDEMQADSVK-----------PTEMHYACMVDLLGRAGLMEDAVKLIKN 319 (423)
Q Consensus 277 ~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 319 (423)
+|...|+++.+.... .+...|..+..++...|+.+.+..+.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 666666666554100 0134455555555555555555554443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-18 Score=147.30 Aligned_cols=267 Identities=11% Similarity=-0.010 Sum_probs=195.1
Q ss_pred HHhcCChHHHHHHhch-hcCC----cchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhh
Q 038550 103 YAKCGCLNLAQNVFNI-SFRD----EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177 (423)
Q Consensus 103 ~~~~g~~~~a~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 177 (423)
....|++..|+..++. ...+ ......+.++|...|+++.|+..++. . -+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHH
Confidence 3445666666665521 1111 12334456666777777776665543 1 255666677777777777777777
Q ss_pred hHHHHHHHHhccCc-chHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 038550 178 KEIHGVTIRKHLHT-HLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG 256 (423)
Q Consensus 178 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 256 (423)
.+.++.+...+..| +...+..+..++...|++++|.+.+++ ..+...+..++..+.+.|++++|...++++.+..
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-- 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD-- 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--
Confidence 77777777665433 344556677888999999999999998 5678889999999999999999999999999874
Q ss_pred CCHHHH---HHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHH
Q 038550 257 YDPVSY---IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGA 331 (423)
Q Consensus 257 p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~ 331 (423)
|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|+..|+++ ...| ++.++..
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 543211 22334455669999999999999987 4678889999999999999999999999987 4455 7788999
Q ss_pred HHHHHHhcCChhH-HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHH
Q 038550 332 LLGACRIYGNVEL-GAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKV 382 (423)
Q Consensus 332 l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 382 (423)
++..+...|+.++ +..+++++.+.+|+++.+.. ...+.+.++++..-
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHH
Confidence 9999999999876 67899999999999876543 34455555555443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.3e-17 Score=151.23 Aligned_cols=381 Identities=9% Similarity=-0.020 Sum_probs=271.9
Q ss_pred ccCCcchhHHhhcccCC--c-ChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHh-hcCCCCccHHH
Q 038550 4 KSSRPAEASYLFHNIAE--K-NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPAC-ARGHFLRPGKE 79 (423)
Q Consensus 4 ~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~ 79 (423)
+.|++++|..+|+++.+ | +...|...+..+.+.|++++|.++|+++.... |+...|...+... ...|+.+.|.+
T Consensus 24 ~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~ 101 (530)
T 2ooe_A 24 QNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKE 101 (530)
T ss_dssp HSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHH
T ss_pred HhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHH
Confidence 46899999999999876 3 56689999999999999999999999998753 6777777776533 45678887766
Q ss_pred ----HHHHHHHc-CCC-CchHHHHHHHHHHHh---------cCChHHHHHHhch-h-cCCc---chHHHHHHH---H---
Q 038550 80 ----IHARIIRK-GLN-FDLFLTNALTDMYAK---------CGCLNLAQNVFNI-S-FRDE---VSYNILIVG---Y--- 133 (423)
Q Consensus 80 ----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~-~-~~~~---~~~~~l~~~---~--- 133 (423)
+|+..+.. |.. ++...|...+....+ .|+++.|..+|+. . .|.. ..|...... +
T Consensus 102 ~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~ 181 (530)
T 2ooe_A 102 KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIH 181 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchh
Confidence 66666543 444 345677777776554 6889999999922 1 2221 223322221 1
Q ss_pred -------hcCCChhhHHHHHHHHH------hcC---CCCch--------hhHHHHHHHHHhH----hh----HHhhhHHH
Q 038550 134 -------SQTSDCSESLSLFSEMR------LLG---MKHDV--------VSFMGAISACANL----AA----IKQGKEIH 181 (423)
Q Consensus 134 -------~~~~~~~~a~~~~~~m~------~~~---~~~~~--------~~~~~ll~~~~~~----~~----~~~a~~~~ 181 (423)
.+.+++..|..+++++. +.. ++|+. ..|...+...... ++ .+.+..+|
T Consensus 182 ~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y 261 (530)
T 2ooe_A 182 LAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAY 261 (530)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHH
Confidence 12345677777776532 221 24431 2333333221111 11 23667788
Q ss_pred HHHHHhccCcchHHHHHHHHHHHh-------cCCHH-------HHHHHhccCCC---C-ChhhHHHHHHHHhccCCHHHH
Q 038550 182 GVTIRKHLHTHLFVANSILDFYTR-------SGRID-------LANKIFDCLPV---K-DSASWNTLILGYGMLGEVDTA 243 (423)
Q Consensus 182 ~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~a 243 (423)
++++...+ .+...|..++..+.+ .|+++ +|..+|++... | +...|..++..+.+.|++++|
T Consensus 262 ~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A 340 (530)
T 2ooe_A 262 EQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKV 340 (530)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHH
Confidence 88887643 456677777777765 68876 89999987653 3 578899999999999999999
Q ss_pred HHHHHHHHHcCCCCC-H-HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCChHHHHHHHhhC
Q 038550 244 INLFEAMREDGVGYD-P-VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL-LGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 244 ~~~~~~m~~~~~~p~-~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~ 320 (423)
..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|++..+.. +.+...|...... +...|++++|..+|++.
T Consensus 341 ~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~a 417 (530)
T 2ooe_A 341 HSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELG 417 (530)
T ss_dssp HHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 9999999985 443 3 578888888889999999999999998752 2233333332222 34689999999999977
Q ss_pred -CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc----hHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 321 -PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG----YYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 321 -~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
...| ++..|..++..+...|+.++|..+|+++....|.++. +|...+......|+.+.+..+.+++.+.-
T Consensus 418 l~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 418 LKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3345 6789999999999999999999999999998876665 78788888888999999999999987654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-18 Score=152.13 Aligned_cols=260 Identities=7% Similarity=-0.088 Sum_probs=180.8
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHH
Q 038550 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYT 204 (423)
Q Consensus 125 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (423)
.+..+...+...|++++|..+|+++.+.. +.+..++..+..++...|++++|...++.+.+..+ .+...+..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHHH
Confidence 34444444455555555555555554432 22334444444455555555555555555544322 22334444555555
Q ss_pred hcCCHHHHHHHhccCC---CCChhhHHHH--------------HH-HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038550 205 RSGRIDLANKIFDCLP---VKDSASWNTL--------------IL-GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAIL 266 (423)
Q Consensus 205 ~~~~~~~A~~~~~~~~---~~~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 266 (423)
..|++++|...++++. +.+...+..+ .. .+...|++++|...++++.+... .+...+..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHH
Confidence 5555555555554432 1111222221 22 36778999999999999988643 3778899999
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhH
Q 038550 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVEL 344 (423)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~ 344 (423)
..+...|++++|...++++.+.. +.+..++..+...+...|++++|...|+++ ...| +...+..+...+...|++++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999998874 456788999999999999999999999987 3344 67889999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 345 GAWAAEHLFMLKPQ------------HCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 345 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
|...++++.+..|. ++.++..++.++.+.|++++|..++++..+
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999988 688899999999999999999999876544
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-16 Score=149.83 Aligned_cols=364 Identities=9% Similarity=0.005 Sum_probs=264.1
Q ss_pred cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHH
Q 038550 21 KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALT 100 (423)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 100 (423)
.|..+|..++. +.+.|++++|..+|+++.+. .+-+...|...+..+.+.|+++.|..+|++++... |+...|..++
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 36778999998 47899999999999999976 34466789999999999999999999999999774 5777777776
Q ss_pred HH-HHhcCChHHHHH----Hhch-------hcCCcchHHHHHHHHhc---------CCChhhHHHHHHHHHhcCCCCchh
Q 038550 101 DM-YAKCGCLNLAQN----VFNI-------SFRDEVSYNILIVGYSQ---------TSDCSESLSLFSEMRLLGMKHDVV 159 (423)
Q Consensus 101 ~~-~~~~g~~~~a~~----~~~~-------~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~ 159 (423)
.. ....|+.+.|.+ +|+. .+.+...|...+....+ .|+++.|..+|++..+....+...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 53 345677777665 5521 12355677777776654 688999999999998831111122
Q ss_pred hHHHHHHHH-------------HhHhhHHhhhHHHHHHHH------hc---cCcc--------hHHHHHHHHHHHhc---
Q 038550 160 SFMGAISAC-------------ANLAAIKQGKEIHGVTIR------KH---LHTH--------LFVANSILDFYTRS--- 206 (423)
Q Consensus 160 ~~~~ll~~~-------------~~~~~~~~a~~~~~~~~~------~~---~~~~--------~~~~~~l~~~~~~~--- 206 (423)
.|....... .+.+++..|..++..... .. ++|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 333222211 134567777777665321 11 2332 23444444332221
Q ss_pred -CCH----HHHHHHhccCC---CCChhhHHHHHHHHhc-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHH
Q 038550 207 -GRI----DLANKIFDCLP---VKDSASWNTLILGYGM-------LGEVD-------TAINLFEAMREDGVGYDPVSYIA 264 (423)
Q Consensus 207 -~~~----~~A~~~~~~~~---~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~~~~~p~~~~~~~ 264 (423)
++. +.+..+|++.. +.++..|..++..+.+ .|+++ +|..++++..+.-.+-+...+..
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 222 35666777655 3477888888888775 79987 89999999886322336788999
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC-HhHHHHHHHH-HHhc
Q 038550 265 ILTACSHGGLVEKGKKYFDEMQADSVKPT--EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD-ANIWGALLGA-CRIY 339 (423)
Q Consensus 265 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~~~l~~~-~~~~ 339 (423)
++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|.++|++. ...|+ ...+...... +...
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHc
Confidence 999999999999999999999985 454 257888888889999999999999988 43443 2333322222 3468
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 340 GNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 340 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
|+.++|..+|+++.+..|+++.+|..++..+.+.|+.++|+.+|++....+
T Consensus 405 ~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred CChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999998764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-17 Score=145.08 Aligned_cols=264 Identities=9% Similarity=-0.083 Sum_probs=153.3
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHH
Q 038550 22 NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTD 101 (423)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 101 (423)
+...|..+...+...|++++|..+|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~--- 94 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAA--- 94 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH---
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHH---
Confidence 34455566666666666666666666665542 2244455555555666666666666666665543 223444444
Q ss_pred HHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHH--------------HH-
Q 038550 102 MYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGA--------------IS- 166 (423)
Q Consensus 102 ~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------l~- 166 (423)
+...+...|++++|.+.++++.+.. +.+...+..+ ..
T Consensus 95 ---------------------------la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (327)
T 3cv0_A 95 ---------------------------LAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDF 146 (327)
T ss_dssp ---------------------------HHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------C
T ss_pred ---------------------------HHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhH
Confidence 4444445555555555555554432 1111122111 22
Q ss_pred HHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHH
Q 038550 167 ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTA 243 (423)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a 243 (423)
.+...|++++|...++.+.+..+. +...+..+...+...|++++|...++++. +.+..++..+...+...|++++|
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 266777888888888877765432 45556666666777777777776666543 33456666677777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC-----------ChhhHHHHHHHHHhcCChHH
Q 038550 244 INLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKP-----------TEMHYACMVDLLGRAGLMED 312 (423)
Q Consensus 244 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~ 312 (423)
...++++.+.. +.+..++..+..++...|++++|...++++.+..... +...+..+..++.+.|++++
T Consensus 226 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 226 LDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 77777766643 2245666667777777777777777777766642111 34556666666666666666
Q ss_pred HHHHHhhC
Q 038550 313 AVKLIKNL 320 (423)
Q Consensus 313 a~~~~~~~ 320 (423)
|..++++.
T Consensus 305 A~~~~~~~ 312 (327)
T 3cv0_A 305 VELTYAQN 312 (327)
T ss_dssp HHHHTTCC
T ss_pred HHHHHHHH
Confidence 66666544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-19 Score=157.77 Aligned_cols=240 Identities=13% Similarity=0.086 Sum_probs=96.9
Q ss_pred hcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHH
Q 038550 105 KCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184 (423)
Q Consensus 105 ~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 184 (423)
+.|++++|.++++.. ++..+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..+++..
T Consensus 15 ~~~~ld~A~~fae~~-~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 456677777777333 2224777777777777777777777754 245667777777777778888887777666
Q ss_pred HHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038550 185 IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA 264 (423)
Q Consensus 185 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 264 (423)
++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.++..|...|++++|...|..+ ..|..
T Consensus 88 rk~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~ 153 (449)
T 1b89_A 88 RKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGR 153 (449)
T ss_dssp -----------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHH
T ss_pred HHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHH
Confidence 653 23355667777788888888887777753 56668888888888888888888888865 36778
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhH
Q 038550 265 ILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVEL 344 (423)
Q Consensus 265 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 344 (423)
++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+...|+. ...++..|.+.|++++
T Consensus 154 LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 154 LASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCCHHH
Confidence 888888888888888888777 25677888888888888888886666655444433 4457777888888888
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 038550 345 GAWAAEHLFMLKPQHCGYYILLSNMYAEA 373 (423)
Q Consensus 345 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 373 (423)
|..+++....+++.+...|+.++.+|++-
T Consensus 226 ai~lLe~aL~le~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 226 LITMLEAALGLERAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence 88888888888887777888777766654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-17 Score=143.77 Aligned_cols=247 Identities=11% Similarity=0.007 Sum_probs=202.2
Q ss_pred HHHHhcCCChhhHHHHHHHHHhcCCCCch--hhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcC
Q 038550 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDV--VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207 (423)
Q Consensus 130 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 207 (423)
++-....|++..|+..+++... ..|+. .....+..++...|+++.|...++. ..+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3445678999999999887654 34443 3556678899999999999976654 24567788888999999999
Q ss_pred CHHHHHHHhccCC----CC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 038550 208 RIDLANKIFDCLP----VK-DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF 282 (423)
Q Consensus 208 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 282 (423)
+.++|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999998753 23 566777888999999999999999987 457889999999999999999999999
Q ss_pred HHHHHcCCCCChhhH---HHHHHHHHhcCChHHHHHHHhhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 038550 283 DEMQADSVKPTEMHY---ACMVDLLGRAGLMEDAVKLIKNL--PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357 (423)
Q Consensus 283 ~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 357 (423)
+++.+.. |+.... ..++..+...|++++|..+|+++ ....+...++.+..++...|++++|+..++++.+.+|
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999874 553211 22334444568999999999998 3344788999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCChhH-HHHHHHHHHhcc
Q 038550 358 QHCGYYILLSNMYAEAGKWDE-ASKVRELMKSRE 390 (423)
Q Consensus 358 ~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~ 390 (423)
.++.++..++..+...|+.++ +.++++++.+..
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999976 578989887654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.77 E-value=6.5e-16 Score=151.65 Aligned_cols=284 Identities=12% Similarity=0.049 Sum_probs=218.6
Q ss_pred HHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHH
Q 038550 64 VLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESL 143 (423)
Q Consensus 64 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 143 (423)
+...+...|.+++|..+|++.. -.....+.+ +-..+++++|.++.+.. .+..+|..+..++...|++++|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aerv-n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERC-NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCHHHHH
Confidence 4555667777777877777642 111112222 22667788888777433 34678889999999999999999
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCC
Q 038550 144 SLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD 223 (423)
Q Consensus 144 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 223 (423)
+.|.+. -|...|..++.++.+.|++++|.+++....+....+... +.++.+|.+.+++++...+. ..++
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Id--t~LafaYAKl~rleele~fI---~~~n 1194 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE--TELIFALAKTNRLAELEEFI---NGPN 1194 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccccc--HHHHHHHHhhcCHHHHHHHH---hCCC
Confidence 999653 466788889999999999999999999887765333333 35888899999998655553 4556
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038550 224 SASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL 303 (423)
Q Consensus 224 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 303 (423)
...|..+...|...|++++|..+|... ..|..+..+|++.|+++.|.+.+++. .+..+|..+..+
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 1259 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHH
Confidence 677778899999999999999999984 47899999999999999999999876 345788888889
Q ss_pred HHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhc--CChhHHHH
Q 038550 304 LGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEA--GKWDEASK 381 (423)
Q Consensus 304 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~ 381 (423)
|...|++..|...... +..++..+..++..|.+.|.+++|+.+++....++|.+...|..++.+|.+- ++.-++.+
T Consensus 1260 cve~~Ef~LA~~cgl~--Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLH--IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred HhhhhHHHHHHHHHHh--hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999887764 4556677779999999999999999999999999999999998888777654 33444444
Q ss_pred HHH
Q 038550 382 VRE 384 (423)
Q Consensus 382 ~~~ 384 (423)
+|.
T Consensus 1338 ~f~ 1340 (1630)
T 1xi4_A 1338 LFW 1340 (1630)
T ss_pred HHH
Confidence 443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4e-15 Score=146.19 Aligned_cols=332 Identities=10% Similarity=0.039 Sum_probs=201.4
Q ss_pred cccCCcchhHHhhcccCCcChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHH
Q 038550 3 AKSSRPAEASYLFHNIAEKNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHA 82 (423)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 82 (423)
...|.+++|..+|++.. ....+.+.++. ..+++++|.++.++.. +..+|..+..++...|++++|...|.
T Consensus 1060 i~lglyEEAf~IYkKa~-~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34566777777777653 11222233322 5566777777666441 35566677777777777777777765
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHhch---hcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchh
Q 038550 83 RIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNI---SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159 (423)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 159 (423)
+. .|...|..++.++.+.|++++|.+.+.+ ..+++...+.++.+|++.+++++.... .+ .++..
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~f----I~---~~n~a 1196 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEF----IN---GPNNA 1196 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHH
Confidence 42 3556666677777777777777777722 223333444567777777666643322 21 34455
Q ss_pred hHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCC
Q 038550 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239 (423)
Q Consensus 160 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 239 (423)
.+..+...|...|++++|..+|..+ ..|..+...|.+.|+++.|.+.+++.. +..+|..+-.+|...|+
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~--n~~aWkev~~acve~~E 1265 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKE 1265 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC--CHHHHHHHHHHHhhhhH
Confidence 5666777777777777777777664 356667777777777777777777663 55677777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--CChHHHHHHH
Q 038550 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA--GLMEDAVKLI 317 (423)
Q Consensus 240 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~ 317 (423)
+..|...... +..++..+..++..|.+.|.+++|+.+++...... +-....|..|...|++. ++..++.+.|
T Consensus 1266 f~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1266 FRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred HHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7766665443 22355566677777888888888888887766543 33344555566666543 3444444444
Q ss_pred h-hCCCCC------CHhHHHHHHHHHHhcCChhHHHHHHHHHHhc------------CCCCcchHHHHHHHHHhcC
Q 038550 318 K-NLPVEP------DANIWGALLGACRIYGNVELGAWAAEHLFML------------KPQHCGYYILLSNMYAEAG 374 (423)
Q Consensus 318 ~-~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~p~~~~~~~~l~~~~~~~g 374 (423)
. ++.+.| +...|.-+.-.|.+.|+++.|....-+-... .+.++..|...+..|...+
T Consensus 1340 ~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1340 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 3 333322 4566777778888888888777333222111 3556666666666666555
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-16 Score=145.97 Aligned_cols=352 Identities=9% Similarity=-0.068 Sum_probs=227.9
Q ss_pred ccccCCcchhHHhhcccCC------------cChhhHHHHHHHHHhCCChHHHHHHHhhchhC-----C-CCC-CchhHH
Q 038550 2 YAKSSRPAEASYLFHNIAE------------KNIVSWNAMVANFAQNRLELKALQLVREMPIH-----N-EFP-NSVTLT 62 (423)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~-~~p-~~~~~~ 62 (423)
|.+.|++++|++.|++..+ ....+|+.+...|...|++++|...+++..+. + ..+ ...++.
T Consensus 61 ~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~ 140 (472)
T 4g1t_A 61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC 140 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHH
Confidence 3467999999999987532 23567999999999999999999999887542 1 111 234555
Q ss_pred HHHHHhhc--CCCCccHHHHHHHHHHcCCCCchHHHHHHHHH---HHhcCChHHHHHHh----chhcCCcchHHHHHHHH
Q 038550 63 NVLPACAR--GHFLRPGKEIHARIIRKGLNFDLFLTNALTDM---YAKCGCLNLAQNVF----NISFRDEVSYNILIVGY 133 (423)
Q Consensus 63 ~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~ 133 (423)
.+..++.. .+++++|...|++.++.. +.++..+..+..+ +...++.++|++.+ +..+.+..++..+...+
T Consensus 141 ~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~ 219 (472)
T 4g1t_A 141 EEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219 (472)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence 55555443 457899999999999875 3355555555544 34567778888777 44455666777666555
Q ss_pred hc----CCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhc---
Q 038550 134 SQ----TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS--- 206 (423)
Q Consensus 134 ~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 206 (423)
.. .+++++|.+.+++..... +.+...+..+...+...|++++|...++++.+..+. +..++..+..+|...
T Consensus 220 ~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~ 297 (472)
T 4g1t_A 220 HKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQ 297 (472)
T ss_dssp HHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHH
Confidence 44 467889999999988764 556778889999999999999999999999887543 345555565555432
Q ss_pred ----------------CCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH--HHHHH
Q 038550 207 ----------------GRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPV--SYIAI 265 (423)
Q Consensus 207 ----------------~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~l 265 (423)
+..+.|...++... +.+..++..+...+...|++++|...|++..+....|... .+..+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~ 377 (472)
T 4g1t_A 298 VMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRY 377 (472)
T ss_dssp HHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 23456666666543 4466788999999999999999999999998865443221 22333
Q ss_pred HH-HHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCCh
Q 038550 266 LT-ACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNV 342 (423)
Q Consensus 266 l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~ 342 (423)
.. .....|+.++|+..|++..+. .|+.......+ ..+.+++++. ...| +..+|..+...|...|++
T Consensus 378 ~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~ 446 (472)
T 4g1t_A 378 GNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKM 446 (472)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 22 245789999999999999884 45543322222 2233333333 2234 677999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCcchHHHHH
Q 038550 343 ELGAWAAEHLFMLKPQHCGYYILLS 367 (423)
Q Consensus 343 ~~a~~~~~~~~~~~p~~~~~~~~l~ 367 (423)
++|++.|+++++.+|.+|.+..-++
T Consensus 447 ~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 447 QQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp C------------------------
T ss_pred HHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 9999999999999998887766543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=159.09 Aligned_cols=111 Identities=12% Similarity=0.106 Sum_probs=72.5
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038550 225 ASWNTLILGYGMLGEVDTAINLFEAMRE---DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301 (423)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 301 (423)
.+||++|.+||+.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..||++||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 4566666666666666666666665543 3566666666666666666666666666666666666666666666666
Q ss_pred HHHHhcCCh-HHHHHHHhhC---CCCCCHhHHHHHHHH
Q 038550 302 DLLGRAGLM-EDAVKLIKNL---PVEPDANIWGALLGA 335 (423)
Q Consensus 302 ~~~~~~~~~-~~a~~~~~~~---~~~~~~~~~~~l~~~ 335 (423)
.++++.|+. ++|.++|++| |+.||..+|++++.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~ 245 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccCh
Confidence 666666653 5566666666 666666666666543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-18 Score=163.66 Aligned_cols=120 Identities=14% Similarity=0.245 Sum_probs=99.4
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHhccCC-------CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038550 192 HLFVANSILDFYTRSGRIDLANKIFDCLP-------VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA 264 (423)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 264 (423)
...+|+++|++||+.|++++|.++|++|. .||+.|||+||.+||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 35577777777777777777777775542 57888889999999999999999999999999999999999999
Q ss_pred HHHHHhccCc-HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 038550 265 ILTACSHGGL-VEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLME 311 (423)
Q Consensus 265 ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 311 (423)
+|.++++.|+ .+.|.++|++|.+.|+.||..+|++++.+..+.+-++
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~ 253 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHH
Confidence 9999999887 4788899999999999999999998887666554333
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-16 Score=133.67 Aligned_cols=229 Identities=10% Similarity=0.039 Sum_probs=152.2
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHH
Q 038550 125 SYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYT 204 (423)
Q Consensus 125 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (423)
.|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...++.+.+.......
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------- 73 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRA----------- 73 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccccc-----------
Confidence 45556666666677777777777666655 55566666666666666666666666665553321100
Q ss_pred hcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 038550 205 RSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284 (423)
Q Consensus 205 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 284 (423)
+.. ....++..+...+...|++++|...+++..+. .|+. ..+...|++++|...++.
T Consensus 74 ---~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~ 130 (258)
T 3uq3_A 74 ---DYK-----------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEA 130 (258)
T ss_dssp ---CHH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHH
T ss_pred ---chH-----------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHH
Confidence 000 00344555666666677777777777776664 2332 235556777777777777
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcch
Q 038550 285 MQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGY 362 (423)
Q Consensus 285 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 362 (423)
+.... +.+...+..+...+...|++++|...|+++ ...| +..++..+...+...|++++|+..++++.+..|.++.+
T Consensus 131 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 209 (258)
T 3uq3_A 131 EAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA 209 (258)
T ss_dssp HHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHH
Confidence 77652 334556677777777788888888777776 2233 56677777788888888888888888888888888888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 363 YILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 363 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
+..++.++...|++++|...+++..+..
T Consensus 210 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 210 YIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 8888888888888888888888776654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-16 Score=128.65 Aligned_cols=195 Identities=15% Similarity=0.057 Sum_probs=151.2
Q ss_pred cchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038550 191 THLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267 (423)
Q Consensus 191 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 267 (423)
++...+..+...+.+.|++++|...|++.. +.+...+..+...+.+.|++++|+..+++..+... .+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 445556667777777888888888777654 34667788888888899999999999999887642 26678888888
Q ss_pred HHhcc-----------CcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCHhHHHHHHHH
Q 038550 268 ACSHG-----------GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDANIWGALLGA 335 (423)
Q Consensus 268 ~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~ 335 (423)
++... |++++|...+++..+.. +-+...+..+..+|...|++++|+..|++. .+..++..+..+..+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~ 160 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 88888 99999999999999864 446778888999999999999999999987 222788899999999
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 038550 336 CRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387 (423)
Q Consensus 336 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 387 (423)
+...|++++|+..++++.+..|.++.++..++.++...|++++|+..+++..
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999988754
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.1e-16 Score=130.41 Aligned_cols=194 Identities=18% Similarity=0.098 Sum_probs=147.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHhccCC--CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC--CCC----HHHHHHHHH
Q 038550 196 ANSILDFYTRSGRIDLANKIFDCLP--VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV--GYD----PVSYIAILT 267 (423)
Q Consensus 196 ~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~~~ll~ 267 (423)
+..+...+...|++++|...|++.. ..+...|..+..++...|++++|...+++..+... .|+ ..++..+..
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 87 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGN 87 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHH
Confidence 3344445555555555555554322 13455666677777777778888877777765421 122 578889999
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHH
Q 038550 268 ACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELG 345 (423)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a 345 (423)
++...|++++|...++++... .|+. ..+...|++++|...++++ ...| +...+..+...+...|++++|
T Consensus 88 ~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 88 AYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence 999999999999999999985 3553 3566778899999999987 3455 566888889999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCCCCccc
Q 038550 346 AWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWV 400 (423)
Q Consensus 346 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 400 (423)
...++++.+..|.++.++..++.+|...|++++|+..+++..+.. |+....|.
T Consensus 159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~ 211 (258)
T 3uq3_A 159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYI 211 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HHHHHHHH
Confidence 999999999999999999999999999999999999999998754 44433343
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-15 Score=129.00 Aligned_cols=241 Identities=11% Similarity=-0.017 Sum_probs=121.2
Q ss_pred HHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcc--hHHHHHHHHHHHhc
Q 038550 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH--LFVANSILDFYTRS 206 (423)
Q Consensus 129 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 206 (423)
....+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+....+. ...+..+..++...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3334444444444444444444332 12222344444444444444444444444444211111 11233444444444
Q ss_pred CCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 038550 207 GRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFD 283 (423)
Q Consensus 207 ~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 283 (423)
|++++|...|++.. +.+..+|..+...|...|++++|...+++..+.. +.+...+..+...+...+++++|...++
T Consensus 88 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444332 2234455555555555555555555555554431 1234444444422233346666666666
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCC---hHHHHHHHhhC----CCCCC------HhHHHHHHHHHHhcCChhHHHHHHH
Q 038550 284 EMQADSVKPTEMHYACMVDLLGRAGL---MEDAVKLIKNL----PVEPD------ANIWGALLGACRIYGNVELGAWAAE 350 (423)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~----~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~ 350 (423)
++.+.. +.+...+..+..++...|+ +++|...+++. ...|+ ..++..+...|...|++++|...++
T Consensus 167 ~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (272)
T 3u4t_A 167 KVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245 (272)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666542 2334455555555555555 55555555544 11232 2466677788888899999999999
Q ss_pred HHHhcCCCCcchHHHHHHHHHh
Q 038550 351 HLFMLKPQHCGYYILLSNMYAE 372 (423)
Q Consensus 351 ~~~~~~p~~~~~~~~l~~~~~~ 372 (423)
++.+.+|.++.++..+......
T Consensus 246 ~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 246 NILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHCTTCHHHHHHHC-----
T ss_pred HHHhcCccHHHHHHHhhhhhcc
Confidence 9999999988877776655433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-16 Score=142.99 Aligned_cols=371 Identities=9% Similarity=0.002 Sum_probs=230.5
Q ss_pred cccCCcchhHHhhcccCC-cChhhHHHHHHHHHhCCCh---HHHHHHHhhchhCCCCCCchhHHHHHHHhhcCC-----C
Q 038550 3 AKSSRPAEASYLFHNIAE-KNIVSWNAMVANFAQNRLE---LKALQLVREMPIHNEFPNSVTLTNVLPACARGH-----F 73 (423)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-----~ 73 (423)
.+.|++++|.+.|++..+ .+..++..|...|...|+. ++|.+.|++..+. +...+..+...+...+ +
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHH
T ss_pred HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcC
Confidence 356788888888888755 4566677777777777777 8888888887753 4555666666444443 6
Q ss_pred CccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHH---HHHHh--chhcCCcchHHHHHHHHhcCCChhhHHHHHHH
Q 038550 74 LRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNL---AQNVF--NISFRDEVSYNILIVGYSQTSDCSESLSLFSE 148 (423)
Q Consensus 74 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 148 (423)
+++|...|++..+.|.. + .+..|...|...+..++ +.+.+ .....+...+..|...|...+.++++......
T Consensus 90 ~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~ 166 (452)
T 3e4b_A 90 HHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVER 166 (452)
T ss_dssp HHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHH
Confidence 67888888888887632 2 56667777776655433 33333 22234667778888888888866666655444
Q ss_pred HHhcCCCCchhhHHHHHHHHHhHh---hHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhc----CCHHHHHHHhccCCC
Q 038550 149 MRLLGMKHDVVSFMGAISACANLA---AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS----GRIDLANKIFDCLPV 221 (423)
Q Consensus 149 m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~ 221 (423)
+.+.-...++..+..+...+...| +.++|...|+...+.|... ...+..+...|... +++++|...|++..+
T Consensus 167 ~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~-a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~ 245 (452)
T 3e4b_A 167 ICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT-AQRVDSVARVLGDATLGTPDEKTAQALLEKIAP 245 (452)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGG
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcC
Confidence 433322333447777888888888 8888999998888877543 33334466666554 688899998887764
Q ss_pred CChhhHHHHHHH-H--hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-----cHHHHHHHHHHHHHcCCCCC
Q 038550 222 KDSASWNTLILG-Y--GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG-----LVEKGKKYFDEMQADSVKPT 293 (423)
Q Consensus 222 ~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~ 293 (423)
.++..+..+... + ...+++++|..+|++..+.| +...+..+...|. .| ++++|...|++.. . -+
T Consensus 246 g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~ 317 (452)
T 3e4b_A 246 GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---RE 317 (452)
T ss_dssp GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TC
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CC
Confidence 466777777776 4 46788999999999888776 5667777777666 44 8889999888877 3 34
Q ss_pred hhhHHHHHHHHHh----cCChHHHHHHHhhCCCCCCHhHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCcchHHH
Q 038550 294 EMHYACMVDLLGR----AGLMEDAVKLIKNLPVEPDANIWGALLGACRI----YGNVELGAWAAEHLFMLKPQHCGYYIL 365 (423)
Q Consensus 294 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~ 365 (423)
...+..|...|.. ..++++|..+|++.-..-+......|...|.. ..+.++|...++.+.+.++........
T Consensus 318 ~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~ 397 (452)
T 3e4b_A 318 VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLAT 397 (452)
T ss_dssp HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5666667777765 34888999998887323344555566666653 458889999999888877544332222
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc
Q 038550 366 LSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 366 l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
.+......++.++|..+.++..+.
T Consensus 398 ~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 398 QLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHh
Confidence 222223344667777777776654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.1e-15 Score=134.71 Aligned_cols=343 Identities=11% Similarity=-0.000 Sum_probs=235.8
Q ss_pred HHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCC---ccHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 038550 28 AMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFL---RPGKEIHARIIRKGLNFDLFLTNALTDMYA 104 (423)
Q Consensus 28 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 104 (423)
.+...+.+.|++++|.++|++..+.| +...+..+...+...|+. ++|...|++..+. ++..+..|..++.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35667788999999999999998876 455666677777778888 8999999998854 5566666777555
Q ss_pred hcC-----ChHHHHHHh--chhcCCcchHHHHHHHHhcCCChh---hHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhH
Q 038550 105 KCG-----CLNLAQNVF--NISFRDEVSYNILIVGYSQTSDCS---ESLSLFSEMRLLGMKHDVVSFMGAISACANLAAI 174 (423)
Q Consensus 105 ~~g-----~~~~a~~~~--~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 174 (423)
..+ ++++|...| .....+..++..|...|...+..+ .+.+.+.+....| +......+...+...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 555 778999999 333446668888888888776544 4555555555544 344666777777777766
Q ss_pred HhhhHHHHHHHHhccCcchHHHHHHHHHHHhcC---CHHHHHHHhccCC---CCChhhHHHHHHHHhcc----CCHHHHH
Q 038550 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG---RIDLANKIFDCLP---VKDSASWNTLILGYGML----GEVDTAI 244 (423)
Q Consensus 175 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~----g~~~~a~ 244 (423)
+++......+.+.-...++..+..+...|...| +.++|...|++.. .++...+..+...|... +++++|.
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 555555444444333334447778889999999 8999999998764 33445556777777655 7999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-H--hccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-----ChHHHHHH
Q 038550 245 NLFEAMREDGVGYDPVSYIAILTA-C--SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG-----LMEDAVKL 316 (423)
Q Consensus 245 ~~~~~m~~~~~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~ 316 (423)
.+|++.. .| +...+..+... + ...+++++|...|++..+.| +...+..|...|. .| ++++|+..
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 9999987 33 45566666665 4 56899999999999999876 5667777777777 55 99999999
Q ss_pred HhhCCCCCCHhHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHh
Q 038550 317 IKNLPVEPDANIWGALLGACRI----YGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAE----AGKWDEASKVRELMKS 388 (423)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~ 388 (423)
|++.- .-++.....|...|.. ..++++|...|+++.+.+ ++.....|+.+|.. .++.++|..++++..+
T Consensus 310 ~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 310 FEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 99998 6678888888877766 349999999999988754 56788888888875 4688999999999888
Q ss_pred ccc
Q 038550 389 REA 391 (423)
Q Consensus 389 ~~~ 391 (423)
.|.
T Consensus 387 ~g~ 389 (452)
T 3e4b_A 387 QDT 389 (452)
T ss_dssp TCC
T ss_pred CCC
Confidence 764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-15 Score=127.59 Aligned_cols=242 Identities=10% Similarity=-0.063 Sum_probs=186.8
Q ss_pred hcCCChhhHHHHHHHHHhcCCC---CchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHH
Q 038550 134 SQTSDCSESLSLFSEMRLLGMK---HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRID 210 (423)
Q Consensus 134 ~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 210 (423)
...|++++|+..++++.+.... .+..++..+...+...|++++|...++++.+..+ .+...+..+..+|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHH
Confidence 3457788889999888875321 1355777888888888999999999988888654 35667788888899999999
Q ss_pred HHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038550 211 LANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287 (423)
Q Consensus 211 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 287 (423)
+|...|++.. +.+..++..+...+...|++++|...++++.+. .|+.......+..+...|++++|...+++...
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999988765 346788999999999999999999999999886 34444444455556777999999999988887
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC-----HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc
Q 038550 288 DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD-----ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG 361 (423)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 361 (423)
.. +++...+ .++..+...++.++|...+++. ...|+ ...+..+...+...|++++|...++++.+..|.+..
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 63 4444444 4677778888889999999876 33332 577888999999999999999999999999987754
Q ss_pred hHHHHHHHHHhcCChhHHHHHH
Q 038550 362 YYILLSNMYAEAGKWDEASKVR 383 (423)
Q Consensus 362 ~~~~l~~~~~~~g~~~~A~~~~ 383 (423)
.+ ..++...|++++|++.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 43 55677889999988776
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.1e-15 Score=121.69 Aligned_cols=194 Identities=14% Similarity=0.025 Sum_probs=83.8
Q ss_pred CcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHH
Q 038550 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILD 201 (423)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 201 (423)
+...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+..+. +...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 33344444444444444444444444444332 223334444444444444444444444444443221 2223333333
Q ss_pred HHHhc-----------CCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038550 202 FYTRS-----------GRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILT 267 (423)
Q Consensus 202 ~~~~~-----------~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 267 (423)
++... |++++|...|++.. +.+...+..+...+...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 33333 33444443333322 1234444555555555566666666666655554 35555555555
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC
Q 038550 268 ACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (423)
++...|++++|...|+++.+.. +.+...+..+...+...|++++|...|++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666655542 334445555555555556666665555543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-14 Score=129.07 Aligned_cols=244 Identities=9% Similarity=0.044 Sum_probs=161.5
Q ss_pred chHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhh-HHhhhHHHHHHHHhccCcchHHHHHHHHH
Q 038550 124 VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAA-IKQGKEIHGVTIRKHLHTHLFVANSILDF 202 (423)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (423)
.+|+.+...+.+.|++++|+..+++.++.. +-+...|..+..++...|+ +++|+..+++++...+. +...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 345556666666666666666666666643 3344556666666666664 66666666666665432 34455556666
Q ss_pred HHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCcHHHH
Q 038550 203 YTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH-GGLVEKG 278 (423)
Q Consensus 203 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a 278 (423)
+...|++++|+..|+++. +.+...|..+..++...|++++|+..++++++.... +...|+.+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHH
Confidence 666666666666666554 345667777777777788888888888888776433 66777777777777 5554666
Q ss_pred -----HHHHHHHHHcCCCCChhhHHHHHHHHHhcC--ChHHHHHHHhhCCCCC-CHhHHHHHHHHHHhcC---------C
Q 038550 279 -----KKYFDEMQADSVKPTEMHYACMVDLLGRAG--LMEDAVKLIKNLPVEP-DANIWGALLGACRIYG---------N 341 (423)
Q Consensus 279 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~~---------~ 341 (423)
+..+++.+... +-+...|..+..++...| ++++|++.+.++...| +...+..+...|.+.| .
T Consensus 255 ~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 47777777653 345667777777777776 5778887777764444 4567777777777653 2
Q ss_pred hhHHHHHHHHH-HhcCCCCcchHHHHHHHHH
Q 038550 342 VELGAWAAEHL-FMLKPQHCGYYILLSNMYA 371 (423)
Q Consensus 342 ~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~ 371 (423)
.++|+.+++++ .+.+|.....|..++..+.
T Consensus 334 ~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 334 LNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 57888888888 7888888878877766554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-13 Score=118.16 Aligned_cols=225 Identities=10% Similarity=-0.067 Sum_probs=145.2
Q ss_pred CcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHh----HhhHHhhhHHHHHHHHhccCcchHHHH
Q 038550 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN----LAAIKQGKEIHGVTIRKHLHTHLFVAN 197 (423)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 197 (423)
+..++..+...+...|++++|+..|++..+. -+...+..+...+.. .+++++|...+++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 3445555555566666666666666665552 223344444444444 455555555555444432
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--
Q 038550 198 SILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM----LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH-- 271 (423)
Q Consensus 198 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-- 271 (423)
+...+..+...|.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 44455555555666 677777777777776653 55666777777776
Q ss_pred --cCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHhhCCCCCCHhHHHHHHHHHHh----cCC
Q 038550 272 --GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR----AGLMEDAVKLIKNLPVEPDANIWGALLGACRI----YGN 341 (423)
Q Consensus 272 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 341 (423)
.+++++|...|++..+.+ +...+..+...|.. .+++++|...|++.-...+...+..+...|.. .++
T Consensus 125 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~ 201 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKN 201 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCC
T ss_pred CcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcc
Confidence 777777777777777654 44556666666766 77777777777766212345666677777777 788
Q ss_pred hhHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhccc
Q 038550 342 VELGAWAAEHLFMLKPQHCGYYILLSNMYAE----AGKWDEASKVRELMKSREA 391 (423)
Q Consensus 342 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 391 (423)
+++|...++++.+.+| +..+..++.+|.. .+++++|.+.+++..+.|.
T Consensus 202 ~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 202 FKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 8888888888877765 5667777788887 8888888888888777653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-14 Score=120.57 Aligned_cols=191 Identities=8% Similarity=-0.078 Sum_probs=113.9
Q ss_pred HHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 038550 198 SILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGL 274 (423)
Q Consensus 198 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 274 (423)
.+...+...|++++|...|+++. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...+...|+
T Consensus 42 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~ 120 (252)
T 2ho1_A 42 QLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLYEQKR 120 (252)
T ss_dssp HHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHHhH
Confidence 33344444444444444444332 22344555555666666666666666666655432 245566666666666666
Q ss_pred HHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHH
Q 038550 275 VEKGKKYFDEMQADSVKP-TEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEH 351 (423)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 351 (423)
+++|..+++++...+..| +...+..+...+...|++++|...++++ ...| +...+..+...+...|++++|...+++
T Consensus 121 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 200 (252)
T 2ho1_A 121 YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDL 200 (252)
T ss_dssp HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666666666521222 3455556666666666666666666665 2223 455666666677777777777777777
Q ss_pred HHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 352 LFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 352 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
+.+..|.+...+..++..+...|++++|.++++++.+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 201 FAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77777766666777777777777777777777776654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=9.1e-15 Score=122.44 Aligned_cols=190 Identities=10% Similarity=0.058 Sum_probs=109.2
Q ss_pred HHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 038550 198 SILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGL 274 (423)
Q Consensus 198 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 274 (423)
.+...+...|++++|...|+++. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 28 ~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 106 (243)
T 2q7f_A 28 QQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEM 106 (243)
T ss_dssp --------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhcc
Confidence 33344444444444444444332 2234455555556666666666666666665542 2245566666666666666
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 275 VEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHL 352 (423)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 352 (423)
+++|...++++.+.. +.+...+..+...+...|++++|...++++ ...| +...+..+...+...|++++|...++++
T Consensus 107 ~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 185 (243)
T 2q7f_A 107 YKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAV 185 (243)
T ss_dssp HHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666666666553 334555666666666666776666666665 2222 4556666666777777777777777777
Q ss_pred HhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 353 FMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 353 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
.+..|.++.++..++.+|...|++++|...++++.+.
T Consensus 186 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 186 TEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7777777777777777777777777777777776653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.64 E-value=7.4e-14 Score=117.63 Aligned_cols=208 Identities=12% Similarity=0.008 Sum_probs=143.3
Q ss_pred cchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHH
Q 038550 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF 202 (423)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (423)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------
Confidence 3455666666666666666666666666543 3344455555555555555555555555554432
Q ss_pred HHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHH
Q 038550 203 YTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGY-DPVSYIAILTACSHGGLVEKGKKY 281 (423)
Q Consensus 203 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 281 (423)
+.+...+..+...+...|++++|...++++.+.+..| +...+..+..++...|++++|...
T Consensus 102 ------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 102 ------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2244556666667777777777777777776633334 345677777778888888888888
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 038550 282 FDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359 (423)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 359 (423)
++++.+.. +.+...+..+...+...|++++|...++++ ...| +...+..+...+...|++++|...++++.+..|.+
T Consensus 164 ~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 164 FEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 88887764 345677788888888888888888888876 3333 56677788888888999999999999999998888
Q ss_pred cchHH
Q 038550 360 CGYYI 364 (423)
Q Consensus 360 ~~~~~ 364 (423)
+....
T Consensus 243 ~~~~~ 247 (252)
T 2ho1_A 243 LEYQE 247 (252)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-14 Score=122.82 Aligned_cols=215 Identities=11% Similarity=-0.037 Sum_probs=141.4
Q ss_pred HhCCChHHHHHHHhhchhCCCC---CCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChH
Q 038550 34 AQNRLELKALQLVREMPIHNEF---PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLN 110 (423)
Q Consensus 34 ~~~~~~~~a~~~~~~m~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 110 (423)
...|++++|++.|+++.+.... .+..++..+...+...|++++|...++++++.. +.+..++..+..++...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3457778888888887765321 134567777777888888888888888887765 446777778888888888888
Q ss_pred HHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHH
Q 038550 111 LAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIR 186 (423)
Q Consensus 111 ~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 186 (423)
+|...| +..+.+..++..+..++...|++++|...++++.+. .|+.......+..+...|++++|...++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 888888 334556777888888888888888888888888774 34444444455555667888888888877766
Q ss_pred hccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCC-------hhhHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 038550 187 KHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKD-------SASWNTLILGYGMLGEVDTAINLFEAMRED 253 (423)
Q Consensus 187 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 253 (423)
.... +...+ .++..+...++.++|...++.....+ ..++..+...+...|++++|...|++..+.
T Consensus 173 ~~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 173 KSDK-EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HSCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 5432 22222 25555556666666666665554321 244455555555555555555555555543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-14 Score=121.53 Aligned_cols=207 Identities=10% Similarity=0.025 Sum_probs=139.7
Q ss_pred HHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhcc
Q 038550 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGML 237 (423)
Q Consensus 161 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 237 (423)
+..+...+...|++++|...++++.+..+ .+...+..+...+...|++++|...++++. +.+...+..+...+...
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVK 104 (243)
T ss_dssp ----------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHh
Confidence 33334444444444444444444443222 123344444455555555555555554432 23556677777888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 038550 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLI 317 (423)
Q Consensus 238 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 317 (423)
|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|
T Consensus 105 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp TCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888888764 3367788888888999999999999999988763 456778888889999999999999999
Q ss_pred hhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 038550 318 KNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMY 370 (423)
Q Consensus 318 ~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 370 (423)
+++ ...| +..++..+...+...|++++|...++++.+..|.++.++..+....
T Consensus 183 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 183 AAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 887 3333 5778889999999999999999999999999999988877765443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-13 Score=117.81 Aligned_cols=226 Identities=10% Similarity=-0.088 Sum_probs=162.4
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHh--chhcCCcchHHHHHHHHhc----CCChhhHHHHHHHHHhcCCCCchhhHHHH
Q 038550 91 FDLFLTNALTDMYAKCGCLNLAQNVF--NISFRDEVSYNILIVGYSQ----TSDCSESLSLFSEMRLLGMKHDVVSFMGA 164 (423)
Q Consensus 91 ~~~~~~~~l~~~~~~~g~~~~a~~~~--~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 164 (423)
-++.++..+...+...|++++|...| ...+.+..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 35677888999999999999999999 2335567788999999999 999999999999999875 66777778
Q ss_pred HHHHHh----HhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhc----
Q 038550 165 ISACAN----LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGM---- 236 (423)
Q Consensus 165 l~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~---- 236 (423)
...+.. .+++++|...+++..+.+ +...+. .+...|..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~-------------------------------~lg~~~~~~~~~ 126 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCA-------------------------------SLGGIYHDGKVV 126 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH-------------------------------HHHHHHHHCSSS
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHH-------------------------------HHHHHHHcCCCc
Confidence 888887 888888888888776653 233333 34444444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cC
Q 038550 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH----GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR----AG 308 (423)
Q Consensus 237 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 308 (423)
.+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+...|.. .+
T Consensus 127 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCC
T ss_pred ccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCc
Confidence 566666666666666654 44555666666665 677777777777776653 34556666677777 77
Q ss_pred ChHHHHHHHhhCCCCCCHhHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCC
Q 038550 309 LMEDAVKLIKNLPVEPDANIWGALLGACRI----YGNVELGAWAAEHLFMLKPQH 359 (423)
Q Consensus 309 ~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~ 359 (423)
++++|+..|++.-...+...+..+...|.. .+++++|...++++.+.+|++
T Consensus 201 ~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 201 NFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 777777777766111235566667777777 788888888888888877754
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=3.5e-15 Score=132.75 Aligned_cols=245 Identities=10% Similarity=0.073 Sum_probs=203.6
Q ss_pred hhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCC-HHHHHHHhccCC---CCChhhHHHHHHH
Q 038550 158 VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR-IDLANKIFDCLP---VKDSASWNTLILG 233 (423)
Q Consensus 158 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~---~~~~~~~~~li~~ 233 (423)
...|..+...+.+.|++++|...++++++..+ .+...|..+..++...|+ +++|+..|+++. +.+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 34677788888889999999999999998765 356777889999999997 999999999876 4578899999999
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCChHH
Q 038550 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR-AGLMED 312 (423)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ 312 (423)
+...|++++|+..|+++.+.... +...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999999987533 78899999999999999999999999999975 4578889999999998 666577
Q ss_pred H-----HHHHhhC-CCCC-CHhHHHHHHHHHHhcC--ChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC---------
Q 038550 313 A-----VKLIKNL-PVEP-DANIWGALLGACRIYG--NVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAG--------- 374 (423)
Q Consensus 313 a-----~~~~~~~-~~~~-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------- 374 (423)
| +..|++. .+.| +...|..+...+...| ++++|+..++++ +..|+++.++..++.+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 7 4777766 4556 6778988888888888 689999999998 888999999999999998874
Q ss_pred ChhHHHHHHHHH-HhccccCCCCCcccccccceee
Q 038550 375 KWDEASKVRELM-KSREAKKNPGCSWVQTRDEVQD 408 (423)
Q Consensus 375 ~~~~A~~~~~~m-~~~~~~~~~~~~~~~~~~~~~~ 408 (423)
.+++|+++++++ .+. .|.....|......+..
T Consensus 333 ~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 333 ILNKALELCEILAKEK--DTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHH
Confidence 358999999998 553 45555566655554433
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.2e-14 Score=115.00 Aligned_cols=194 Identities=13% Similarity=0.035 Sum_probs=122.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 038550 195 VANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH 271 (423)
Q Consensus 195 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 271 (423)
.+..+...+...|++++|...|+.+. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 33444444455555555555544332 2234556666666666677777777776666543 2255566666667777
Q ss_pred c-CcHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHH
Q 038550 272 G-GLVEKGKKYFDEMQADSVKP-TEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAW 347 (423)
Q Consensus 272 ~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~ 347 (423)
. |++++|...++++.+.+..| +...+..+...+...|++++|...++++ ...| +...+..+...+...|++++|..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 7 77777777777766621122 2455666667777777777777777665 2233 45667777777777777777777
Q ss_pred HHHHHHhcCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 348 AAEHLFMLKP-QHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 348 ~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
.++++.+..| .++..+..++..+...|+.++|..+++.+.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 169 YFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 7777777777 77777777777777777777777777776553
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.4e-15 Score=134.24 Aligned_cols=260 Identities=12% Similarity=0.032 Sum_probs=161.4
Q ss_pred HHHHHhcCCChhhHHHHHHHHHhcCCCCch----hhHHHHHHHHHhHhhHHhhhHHHHHHHHhc-----cCcchHHHHHH
Q 038550 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDV----VSFMGAISACANLAAIKQGKEIHGVTIRKH-----LHTHLFVANSI 199 (423)
Q Consensus 129 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l 199 (423)
+...+...|++++|+..|++..+.+ +.+. ..+..+...+...|++++|...++++.+.. .......+..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 3444555555555555555555532 1121 244455555555555555555555544321 11223344455
Q ss_pred HHHHHhcCCHHHHHHHhccCCC---------CChhhHHHHHHHHhccCC-----------------HHHHHHHHHHHHHc
Q 038550 200 LDFYTRSGRIDLANKIFDCLPV---------KDSASWNTLILGYGMLGE-----------------VDTAINLFEAMRED 253 (423)
Q Consensus 200 ~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~m~~~ 253 (423)
...|...|++++|...+++... ....++..+...|...|+ +++|...+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 5556666666666655554331 023356666666777777 77777777665432
Q ss_pred ----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCChHHHHHHHhhC-CC
Q 038550 254 ----GVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQADSV-KPT----EMHYACMVDLLGRAGLMEDAVKLIKNL-PV 322 (423)
Q Consensus 254 ----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~ 322 (423)
+..+ ...++..+...+...|++++|...+++..+... .++ ...+..+...|...|++++|...+++. ..
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1111 234677777778888888888888888776411 011 226777788888888888888888765 11
Q ss_pred C---C----CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 323 E---P----DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH------CGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 323 ~---~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
. . ...++..+...+...|++++|...++++.+..+.. ..++..++.+|...|++++|...+++..+.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1 1 24567778888889999999999999887764332 346778888999999999999999887654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-13 Score=117.69 Aligned_cols=236 Identities=13% Similarity=0.028 Sum_probs=173.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCc--hhhHHHHHHHH
Q 038550 95 LTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHD--VVSFMGAISAC 168 (423)
Q Consensus 95 ~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~ 168 (423)
.+......+...|++++|...| +..+.+...+..+..++...|++++|+..+++..+.+..|+ ...|..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344556666777777777777 23344566788888888888888888888888887331222 22377888888
Q ss_pred HhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHhccCCHHHHHH
Q 038550 169 ANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV---KDSASWNTLILGYGMLGEVDTAIN 245 (423)
Q Consensus 169 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~ 245 (423)
...|++++|...++.+.+..+. +...+..+..+|...|++++|...|++... .+...|..+...+...+++++|..
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999888886543 456778889999999999999999988763 356777777734444569999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCc---HHHHHHHHHHHHHc-CCCCC------hhhHHHHHHHHHhcCChHHHHH
Q 038550 246 LFEAMREDGVGYDPVSYIAILTACSHGGL---VEKGKKYFDEMQAD-SVKPT------EMHYACMVDLLGRAGLMEDAVK 315 (423)
Q Consensus 246 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~-~~~~~------~~~~~~l~~~~~~~~~~~~a~~ 315 (423)
.|+++.+.. +.+...+..+..++...|+ +++|...++++.+. .-.|+ ..+|..+...|...|++++|.+
T Consensus 164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999998863 2246777778888888887 88899999888776 22233 2577788899999999999999
Q ss_pred HHhhC-CCCCC-HhHHHHH
Q 038550 316 LIKNL-PVEPD-ANIWGAL 332 (423)
Q Consensus 316 ~~~~~-~~~~~-~~~~~~l 332 (423)
.|+++ .+.|+ ...+..+
T Consensus 243 ~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 243 AWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhcCccHHHHHHHh
Confidence 99987 45563 4444443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-13 Score=113.08 Aligned_cols=203 Identities=11% Similarity=-0.035 Sum_probs=134.6
Q ss_pred HHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhcc-
Q 038550 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGML- 237 (423)
Q Consensus 162 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~- 237 (423)
..+...+...|++++|...++.+.+... .+...+..+..+|...|++++|...++++. +.+..++..+...+...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 90 (225)
T 2vq2_A 12 TQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRL 90 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc
Confidence 3333333444444444444444333321 122333444444445555555555544432 23455667777778888
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 038550 238 GEVDTAINLFEAMREDGVGYD-PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKL 316 (423)
Q Consensus 238 g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 316 (423)
|++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 169 (225)
T 2vq2_A 91 NRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYY 169 (225)
T ss_dssp CCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888877333343 5677778888888899999999888888763 34577788888888889999999988
Q ss_pred HhhC-CCC--CCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 038550 317 IKNL-PVE--PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILL 366 (423)
Q Consensus 317 ~~~~-~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 366 (423)
++++ ... .+...+..+...+...|+.+.|..+++.+.+..|.++.....+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 170 FKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 8877 222 4566777777788889999999999999988888887665543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.9e-15 Score=132.42 Aligned_cols=269 Identities=13% Similarity=0.044 Sum_probs=148.1
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHh----chhcCC----cchHHHHHHHHhcCCChhhHHHHHHHHHhc----CCCC-c
Q 038550 91 FDLFLTNALTDMYAKCGCLNLAQNVF----NISFRD----EVSYNILIVGYSQTSDCSESLSLFSEMRLL----GMKH-D 157 (423)
Q Consensus 91 ~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~ 157 (423)
+....+......+...|++++|...| +..+.+ ..+|..+...+...|++++|...+++.... +-.| .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34455566667777778888877777 222223 245667777777777777777777776442 1111 1
Q ss_pred hhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccC-----cchHHHHHHHHHHHhcCC--------------------HHHH
Q 038550 158 VVSFMGAISACANLAAIKQGKEIHGVTIRKHLH-----THLFVANSILDFYTRSGR--------------------IDLA 212 (423)
Q Consensus 158 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~--------------------~~~A 212 (423)
..++..+...+...|++++|...+++..+.... ....++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 335566666677777777777777766553211 113355556666666666 6666
Q ss_pred HHHhccCCC-----C----ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCcHHHH
Q 038550 213 NKIFDCLPV-----K----DSASWNTLILGYGMLGEVDTAINLFEAMREDGV-GYD----PVSYIAILTACSHGGLVEKG 278 (423)
Q Consensus 213 ~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a 278 (423)
...+++... . ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 665554321 1 123455555666666666666666666543210 111 12455555556666666666
Q ss_pred HHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCChHHHHHHHhhC-C---CCCC----HhHHHHHHHHHHhcCChhHH
Q 038550 279 KKYFDEMQADSV-KPT----EMHYACMVDLLGRAGLMEDAVKLIKNL-P---VEPD----ANIWGALLGACRIYGNVELG 345 (423)
Q Consensus 279 ~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~-~---~~~~----~~~~~~l~~~~~~~~~~~~a 345 (423)
...+++...... .++ ..++..+...|...|++++|...+++. . ..++ ..++..+...+...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 666666554310 011 334555555566666666666665544 0 0111 33455555556666666666
Q ss_pred HHHHHHHHhcCCCC
Q 038550 346 AWAAEHLFMLKPQH 359 (423)
Q Consensus 346 ~~~~~~~~~~~p~~ 359 (423)
...++++.+..+..
T Consensus 327 ~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 327 MHFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666555544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.61 E-value=7.9e-14 Score=111.42 Aligned_cols=166 Identities=14% Similarity=0.096 Sum_probs=145.1
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038550 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302 (423)
Q Consensus 223 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 302 (423)
++..|..+...|...|++++|+..|++..+.... +..++..+..+|.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 5677888999999999999999999998886432 67788999999999999999999999988864 445677777888
Q ss_pred HHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHH
Q 038550 303 LLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEAS 380 (423)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 380 (423)
.+...++++.|...+.+. ...| +...+..+...+...|++++|+..++++.+.+|.++.++..++.+|.+.|++++|+
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 889999999999999887 3344 67788889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q 038550 381 KVRELMKSRE 390 (423)
Q Consensus 381 ~~~~~m~~~~ 390 (423)
+.+++..+..
T Consensus 162 ~~~~~al~~~ 171 (184)
T 3vtx_A 162 KYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhCC
Confidence 9999987754
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.7e-14 Score=125.51 Aligned_cols=261 Identities=15% Similarity=0.058 Sum_probs=170.1
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHhcCCCCc----hhhHHHHHHHHHhHhhHHhhhHHHHHHHHhc-----cCcchHHHHH
Q 038550 128 ILIVGYSQTSDCSESLSLFSEMRLLGMKHD----VVSFMGAISACANLAAIKQGKEIHGVTIRKH-----LHTHLFVANS 198 (423)
Q Consensus 128 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ 198 (423)
.....+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...++...... .......+..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 33445555666666666666655542 112 2344555555566666666666665544321 1112344555
Q ss_pred HHHHHHhcCCHHHHHHHhccCCC-----CC----hhhHHHHHHHHhccCC--------------------HHHHHHHHHH
Q 038550 199 ILDFYTRSGRIDLANKIFDCLPV-----KD----SASWNTLILGYGMLGE--------------------VDTAINLFEA 249 (423)
Q Consensus 199 l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~a~~~~~~ 249 (423)
+...|...|++++|...+++... ++ ..++..+...+...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 56666666666666666654431 11 2356666777777777 7777777776
Q ss_pred HHHc----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCChHHHHHHHhh
Q 038550 250 MRED----GVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQADSV-KPT----EMHYACMVDLLGRAGLMEDAVKLIKN 319 (423)
Q Consensus 250 m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 319 (423)
.... +..| ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5432 1111 234677777888889999999999888775410 111 23677788888899999999988877
Q ss_pred C-CC---CCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCChhHHHHHHHH
Q 038550 320 L-PV---EPD----ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH------CGYYILLSNMYAEAGKWDEASKVREL 385 (423)
Q Consensus 320 ~-~~---~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 385 (423)
. .+ .++ ..++..+...+...|++++|...++++.+..+.. ..++..++..|.+.|++++|...+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 6 11 111 4567778888999999999999999998765332 34677899999999999999999999
Q ss_pred HHhc
Q 038550 386 MKSR 389 (423)
Q Consensus 386 m~~~ 389 (423)
..+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.7e-14 Score=127.09 Aligned_cols=269 Identities=10% Similarity=-0.024 Sum_probs=175.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhhchhCCCCCC-----chhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHH
Q 038550 25 SWNAMVANFAQNRLELKALQLVREMPIHNEFPN-----SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNAL 99 (423)
Q Consensus 25 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 99 (423)
.+......+...|++++|...|++..+.+ |+ ..++..+...+...|++++|...+++.......
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------- 79 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART--------- 79 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh---------
Confidence 34444555555566666666665555432 22 123444444555555555555555544322000
Q ss_pred HHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcC----CC-CchhhHHHHHHHHHhHhh-
Q 038550 100 TDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG----MK-HDVVSFMGAISACANLAA- 173 (423)
Q Consensus 100 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~-~~~~~~~~ll~~~~~~~~- 173 (423)
.++ .+....++..+...+...|++++|...+++..+.. -. ....++..+...+...|+
T Consensus 80 ------~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 143 (406)
T 3sf4_A 80 ------IGD----------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKS 143 (406)
T ss_dssp ------TTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ------ccc----------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCc
Confidence 000 00112345556666666677777776666655421 01 113467778888888899
Q ss_pred -------------------HHhhhHHHHHHHHhc-----cCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC-----CC-
Q 038550 174 -------------------IKQGKEIHGVTIRKH-----LHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-----KD- 223 (423)
Q Consensus 174 -------------------~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~- 223 (423)
+++|...++...+.. ......++..+...|...|++++|...+++... ++
T Consensus 144 ~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 223 (406)
T 3sf4_A 144 FGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK 223 (406)
T ss_dssp CC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc
Confidence 899998888776531 112245677888999999999999999987651 22
Q ss_pred ---hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-CCC-
Q 038550 224 ---SASWNTLILGYGMLGEVDTAINLFEAMREDGVG-YD----PVSYIAILTACSHGGLVEKGKKYFDEMQADSV-KPT- 293 (423)
Q Consensus 224 ---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~- 293 (423)
..++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++...... ..+
T Consensus 224 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 303 (406)
T 3sf4_A 224 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDR 303 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCc
Confidence 237888899999999999999999998753211 12 45788888999999999999999999876511 111
Q ss_pred ---hhhHHHHHHHHHhcCChHHHHHHHhhC
Q 038550 294 ---EMHYACMVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 294 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (423)
..++..+...|...|++++|.+.+++.
T Consensus 304 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 304 IGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 557778889999999999999998875
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-14 Score=131.82 Aligned_cols=210 Identities=8% Similarity=-0.061 Sum_probs=172.9
Q ss_pred hHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCH-HHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHH
Q 038550 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRI-DLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFE 248 (423)
Q Consensus 173 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~ 248 (423)
.++.+...++...... +.+...+..+..++...|++ ++|...|++.. +.+...|..+...|...|++++|...|+
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445555555444322 23556666777777778888 88888777654 3457788889999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcc---------CcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--------CChH
Q 038550 249 AMREDGVGYDPVSYIAILTACSHG---------GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA--------GLME 311 (423)
Q Consensus 249 ~m~~~~~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 311 (423)
+..+. .|+...+..+..++... |++++|...++++.+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99886 46778889999999999 99999999999999874 45678888999999888 9999
Q ss_pred HHHHHHhhC-CCCC----CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 312 DAVKLIKNL-PVEP----DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386 (423)
Q Consensus 312 ~a~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 386 (423)
+|+..|++. .+.| +...|..+..+|...|++++|...|+++.+..|.++.++..++.++...|++++|++.+.++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999988 4455 78899999999999999999999999999999999999999999999999999999765544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-13 Score=123.00 Aligned_cols=271 Identities=14% Similarity=0.037 Sum_probs=164.0
Q ss_pred hHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCch----HHHHHHHHHHHhcCChHHHHHHhc----h------hcCCcch
Q 038550 60 TLTNVLPACARGHFLRPGKEIHARIIRKGLNFDL----FLTNALTDMYAKCGCLNLAQNVFN----I------SFRDEVS 125 (423)
Q Consensus 60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~----~------~~~~~~~ 125 (423)
.+..+...+...|++++|...++++++.+. .+. .++..+..+|...|++++|...|+ . .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 344455566777788888888877777642 222 456677777777788887777771 1 1223456
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHhc----CC-CCchhhHHHHHHHHHhHhh-----------------HHhhhHHHHH
Q 038550 126 YNILIVGYSQTSDCSESLSLFSEMRLL----GM-KHDVVSFMGAISACANLAA-----------------IKQGKEIHGV 183 (423)
Q Consensus 126 ~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~ 183 (423)
+..+...|...|++++|...+++..+. +- +....++..+...+...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 777778888888888888888776653 11 1223466777778888888 7777777666
Q ss_pred HHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCC----
Q 038550 184 TIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV-GYD---- 258 (423)
Q Consensus 184 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~---- 258 (423)
..+.... .++.. ....++..+...+...|++++|...+++..+... .++
T Consensus 209 al~~~~~---------------~~~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 262 (411)
T 4a1s_A 209 NLKLMRD---------------LGDRG-----------AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAE 262 (411)
T ss_dssp HHHHHHH---------------HTCHH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHH---------------cCCHH-----------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHH
Confidence 5442100 00000 0122444455555556666666666555543210 001
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcC--CC---CChhhHHHHHHHHHhcCChHHHHHHHhhC-C------CCC-C
Q 038550 259 PVSYIAILTACSHGGLVEKGKKYFDEMQADS--VK---PTEMHYACMVDLLGRAGLMEDAVKLIKNL-P------VEP-D 325 (423)
Q Consensus 259 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~------~~~-~ 325 (423)
..++..+...|...|++++|...+++..... .. ....++..+...|...|++++|...+++. . ..+ .
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 342 (411)
T 4a1s_A 263 RRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGE 342 (411)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHH
Confidence 1256666666777777777777777666541 00 11345666777777777777777777665 1 111 2
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 038550 326 ANIWGALLGACRIYGNVELGAWAAEHLFMLKP 357 (423)
Q Consensus 326 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 357 (423)
..++..+...|...|++++|...++++.+..+
T Consensus 343 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 343 ARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 34666777788888888888888888877654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.9e-13 Score=117.44 Aligned_cols=280 Identities=10% Similarity=-0.001 Sum_probs=147.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhchhCCCCCC-----chhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHH
Q 038550 26 WNAMVANFAQNRLELKALQLVREMPIHNEFPN-----SVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALT 100 (423)
Q Consensus 26 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 100 (423)
+......+...|++++|...|+++.+.. |+ ...+..+...+...|++++|...+++..+....
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---------- 75 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART---------- 75 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc----------
Confidence 3344455666666666666666665542 22 134445555555566666666655554432000
Q ss_pred HHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCC-CCc----hhhHHHHHHHHHhHhh--
Q 038550 101 DMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGM-KHD----VVSFMGAISACANLAA-- 173 (423)
Q Consensus 101 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~-- 173 (423)
.++ .+....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 76 -----~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 140 (338)
T 3ro2_A 76 -----IGD----------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSF 140 (338)
T ss_dssp -----HTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred -----ccc----------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCccc
Confidence 000 001123455556666666666666666666543210 011 2366667777777777
Q ss_pred ------------------HHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHh
Q 038550 174 ------------------IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG 235 (423)
Q Consensus 174 ------------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~ 235 (423)
+++|...++........ .++.. ....++..+...+.
T Consensus 141 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~---------------~~~~~-----------~~~~~~~~l~~~~~ 194 (338)
T 3ro2_A 141 GCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTA---------------LGDRA-----------AQGRAFGNLGNTHY 194 (338)
T ss_dssp SSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHH---------------HTCHH-----------HHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh---------------cCCHH-----------HHHHHHHHHHHHHH
Confidence 67777666655432100 00000 01123444445555
Q ss_pred ccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHH
Q 038550 236 MLGEVDTAINLFEAMRED----GVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQADSV-KPT----EMHYACMVDLLG 305 (423)
Q Consensus 236 ~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~ 305 (423)
..|++++|...+++..+. +..+ ...++..+...+...|++++|...+++...... ..+ ..++..+...|.
T Consensus 195 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 274 (338)
T 3ro2_A 195 LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 274 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 555555555555554332 1000 122556666666777777777777766654310 011 445666667777
Q ss_pred hcCChHHHHHHHhhC-------CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 038550 306 RAGLMEDAVKLIKNL-------PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358 (423)
Q Consensus 306 ~~~~~~~a~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 358 (423)
..|++++|...+++. +..+ ...++..+...+...|++++|...++++.+..+.
T Consensus 275 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 275 LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 777777777777655 1111 1346667777888888888888888888776543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.52 E-value=6.2e-13 Score=106.15 Aligned_cols=166 Identities=11% Similarity=0.003 Sum_probs=124.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038550 193 LFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269 (423)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 269 (423)
..+|..+...|.+.|++++|+..|++.. +.+..++..+..+|.+.|++++|...+......... +...+..+...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~ 83 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHHH
Confidence 3455556666666666666666665543 335667777778888888888888888887775432 566777777778
Q ss_pred hccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHH
Q 038550 270 SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAW 347 (423)
Q Consensus 270 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~ 347 (423)
...++++.|...+.+..... +.+...+..+...|.+.|++++|++.|++. .+.| +..+|..+..+|...|++++|+.
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence 88888888888888887763 456777888888888889999998888877 4445 67788888889999999999999
Q ss_pred HHHHHHhcCCCCc
Q 038550 348 AAEHLFMLKPQHC 360 (423)
Q Consensus 348 ~~~~~~~~~p~~~ 360 (423)
.|+++.+.+|.++
T Consensus 163 ~~~~al~~~p~~a 175 (184)
T 3vtx_A 163 YFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHTTHHHH
T ss_pred HHHHHHhCCccCH
Confidence 9999998888653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-12 Score=115.47 Aligned_cols=195 Identities=10% Similarity=-0.010 Sum_probs=106.0
Q ss_pred hHHHHHHHHHhHhhHHhhhHHHHHHHHhccC------cchHHHHHHHHHHHhcCCHHHHHHHhccCCC-----CC----h
Q 038550 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLH------THLFVANSILDFYTRSGRIDLANKIFDCLPV-----KD----S 224 (423)
Q Consensus 160 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~ 224 (423)
++..+...+...|+++.|...+++..+.... ....++..+..+|...|++++|...|++... ++ .
T Consensus 145 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 224 (383)
T 3ulq_A 145 FFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMG 224 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 4444444455555555555555444432111 1123445555566666666666665554331 11 2
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC----CCCChh
Q 038550 225 ASWNTLILGYGMLGEVDTAINLFEAMRED----GV-GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADS----VKPTEM 295 (423)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~ 295 (423)
.++..+...|...|++++|...+++..+. +. +....++..+..++...|++++|...+++..+.. -+....
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 304 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 35666777788888888888888777652 22 2234567777788888888888888887776541 111122
Q ss_pred hHHHHHHHHHhcCC---hHHHHHHHhhCCCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 296 HYACMVDLLGRAGL---MEDAVKLIKNLPVEPD-ANIWGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 296 ~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
.+..+...|...|+ +++|+.++++.+..|+ ...+..+...|...|++++|...++++.+
T Consensus 305 ~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 305 EFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23445555555666 5566666665543332 22344444455555555555555555444
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-12 Score=117.86 Aligned_cols=227 Identities=10% Similarity=-0.040 Sum_probs=172.9
Q ss_pred HHHHHHhHhhHHhhhHHHHHHHHhc----cCc-chHHHHHHHHHHHhcCCHHHHHHHhccCCC-----C-----ChhhHH
Q 038550 164 AISACANLAAIKQGKEIHGVTIRKH----LHT-HLFVANSILDFYTRSGRIDLANKIFDCLPV-----K-----DSASWN 228 (423)
Q Consensus 164 ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~-----~~~~~~ 228 (423)
....+...|++++|...+++..+.- ..+ ...++..+..+|...|+++.|...+++... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4556677888999999988887641 111 346778889999999999999888876541 1 235788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHc----CC-CCChhhHH
Q 038550 229 TLILGYGMLGEVDTAINLFEAMREDGV-GYD----PVSYIAILTACSHGGLVEKGKKYFDEMQAD----SV-KPTEMHYA 298 (423)
Q Consensus 229 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 298 (423)
.+...|...|++++|...+++..+... .++ ..++..+..+|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 889999999999999999998765311 112 247888999999999999999999998873 22 33466788
Q ss_pred HHHHHHHhcCChHHHHHHHhhC-CC-----CC-CHhHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCcchHHHHHH
Q 038550 299 CMVDLLGRAGLMEDAVKLIKNL-PV-----EP-DANIWGALLGACRIYGN---VELGAWAAEHLFMLKPQHCGYYILLSN 368 (423)
Q Consensus 299 ~l~~~~~~~~~~~~a~~~~~~~-~~-----~~-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 368 (423)
.+...|.+.|++++|...+++. .+ .| ....+..+...+...|+ +++|+.++++. ...|....++..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 8999999999999999999876 11 22 22335667788888898 77777777775 223444567888999
Q ss_pred HHHhcCChhHHHHHHHHHHhccc
Q 038550 369 MYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 369 ~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
.|...|++++|...+++..+..-
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999876543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-11 Score=106.60 Aligned_cols=218 Identities=12% Similarity=0.110 Sum_probs=118.8
Q ss_pred hhHHHHHHHHHhcCCCCchhhHHHHHHHHHhH-------hhH-------HhhhHHHHHHHHhccCcchHHHHHHHHHHHh
Q 038550 140 SESLSLFSEMRLLGMKHDVVSFMGAISACANL-------AAI-------KQGKEIHGVTIRKHLHTHLFVANSILDFYTR 205 (423)
Q Consensus 140 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-------~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 205 (423)
++|..+|++..... +-+...|..++..+... |++ ++|..++++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666676666642 33455555555554422 433 5666666666552112233455555555666
Q ss_pred cCCHHHHHHHhccCCC--C-Chh-hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCcHHHHHH
Q 038550 206 SGRIDLANKIFDCLPV--K-DSA-SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC-SHGGLVEKGKK 280 (423)
Q Consensus 206 ~~~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~~~~~a~~ 280 (423)
.|++++|..+|++... | +.. .|..++..+.+.|++++|..+|++..+... ++...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666655432 2 232 566666666666666666666666665432 2333333222221 12466666666
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-C---CCC--CHhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 281 YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-P---VEP--DANIWGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~---~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
+|++..+.. +-+...|..++..+.+.|++++|..+|++. . +.| ....|..++......|+.+.|..+++++.+
T Consensus 191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666542 334555666666666666666666666655 1 233 244566666666666666666666666666
Q ss_pred cCCCCc
Q 038550 355 LKPQHC 360 (423)
Q Consensus 355 ~~p~~~ 360 (423)
..|++.
T Consensus 270 ~~p~~~ 275 (308)
T 2ond_A 270 AFREEY 275 (308)
T ss_dssp HTTTTT
T ss_pred Hccccc
Confidence 666543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=8.8e-13 Score=126.53 Aligned_cols=165 Identities=16% Similarity=0.132 Sum_probs=143.4
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038550 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302 (423)
Q Consensus 223 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 302 (423)
+..+|+.+...|.+.|++++|++.|++..+.... +..++..+..+|.+.|++++|...|++..+.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4567888888999999999999999998886322 57788899999999999999999999998864 345778889999
Q ss_pred HHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHH
Q 038550 303 LLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEAS 380 (423)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 380 (423)
+|...|++++|++.|++. .+.| +...|..+...+...|++++|+..|+++.+++|+++.++..++.+|...|++++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 999999999999999887 5566 57789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 038550 381 KVRELMKSR 389 (423)
Q Consensus 381 ~~~~~m~~~ 389 (423)
+.+++..+.
T Consensus 166 ~~~~kal~l 174 (723)
T 4gyw_A 166 ERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 998887653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.5e-14 Score=122.25 Aligned_cols=236 Identities=12% Similarity=0.063 Sum_probs=120.9
Q ss_pred CcchHHHHHHHHhcCCChhhHHHHHHHHHhc-------CCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhc------
Q 038550 122 DEVSYNILIVGYSQTSDCSESLSLFSEMRLL-------GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH------ 188 (423)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------ 188 (423)
+..++..+...+...|++++|...++++.+. ..+.....+..+...+...|++++|...++++....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456777888888888888888888888763 222334566677777777788888888777766531
Q ss_pred -cCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHc------CCCC-CHH
Q 038550 189 -LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED------GVGY-DPV 260 (423)
Q Consensus 189 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~ 260 (423)
.+.....+..+...|...|++++|...++ +..+. +..| ...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------------------------------~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCK-------------------------------RALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHH-------------------------------HHHHHHHHHHCTTCHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHH-------------------------------HHHHHHHHhcCCCChHHHH
Confidence 11223444455555555555555555554 33321 1111 122
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHc------CCCC-ChhhHHHHHHHHHhcCChHHHHHHHhhCC----------CC
Q 038550 261 SYIAILTACSHGGLVEKGKKYFDEMQAD------SVKP-TEMHYACMVDLLGRAGLMEDAVKLIKNLP----------VE 323 (423)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------~~ 323 (423)
.+..+...+...|++++|..+++++... +..| ...++..+...|...|++++|...++++- ..
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 3444444444445555555444444432 0011 12234444444445555555554444330 00
Q ss_pred C-------CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 324 P-------DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 324 ~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
+ ....+..+...+...+.+.++...++......|....++..++.+|.+.|++++|.+++++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 0111222223334455556666666666666677777777788888888888888888777655
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-12 Score=103.06 Aligned_cols=161 Identities=15% Similarity=0.108 Sum_probs=103.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 038550 228 NTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA 307 (423)
Q Consensus 228 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 307 (423)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Confidence 333444444445555554444444321 1234445555555555555555555555555542 33445555556666666
Q ss_pred CChHHHHHHHhhC-CC-CCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 038550 308 GLMEDAVKLIKNL-PV-EPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVREL 385 (423)
Q Consensus 308 ~~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 385 (423)
|++++|.+.++++ .. ..+...+..+...+...|++++|...++++.+..|.++.++..++..+...|++++|...+++
T Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666666655 11 235566777777888888888888888888888888888888888889999999999999888
Q ss_pred HHhcc
Q 038550 386 MKSRE 390 (423)
Q Consensus 386 m~~~~ 390 (423)
..+..
T Consensus 170 ~~~~~ 174 (186)
T 3as5_A 170 ANELD 174 (186)
T ss_dssp HHHHH
T ss_pred HHHcC
Confidence 87654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-13 Score=118.14 Aligned_cols=245 Identities=12% Similarity=0.040 Sum_probs=156.3
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHh-ch-----------hcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhc-----
Q 038550 90 NFDLFLTNALTDMYAKCGCLNLAQNVF-NI-----------SFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLL----- 152 (423)
Q Consensus 90 ~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----- 152 (423)
+.+..++..+...+...|++++|...| +. .+....++..+...|...|++++|...+++....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 334678889999999999999999999 21 1223456888999999999999999999998764
Q ss_pred -CCCC-chhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHH
Q 038550 153 -GMKH-DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTL 230 (423)
Q Consensus 153 -~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 230 (423)
+-.| ...++..+...+...|++++|...++++.+..... .... .......+..+
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------------~~~~------------~~~~~~~~~~l 159 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV------------LGKD------------HPDVAKQLNNL 159 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH------------HCTT------------CHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh------------cCCC------------ChHHHHHHHHH
Confidence 2223 35678888899999999999999999887642000 0000 00012344555
Q ss_pred HHHHhccCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHc-------CCCCChhh
Q 038550 231 ILGYGMLGEVDTAINLFEAMRED------GVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQAD-------SVKPTEMH 296 (423)
Q Consensus 231 i~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~ 296 (423)
...+...|++++|...++++.+. +..| ...++..+..++...|++++|...++++.+. ...+....
T Consensus 160 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 239 (311)
T 3nf1_A 160 ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP 239 (311)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHH
Confidence 56666666677776666666543 1122 2346677777788888888888888777753 11122111
Q ss_pred -------HHHHHHHHHhcCChHHHHHHHhhCC-CCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 038550 297 -------YACMVDLLGRAGLMEDAVKLIKNLP-VEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358 (423)
Q Consensus 297 -------~~~l~~~~~~~~~~~~a~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 358 (423)
+..+...+...+.+.++...++... ..| +..++..+...|...|++++|...++++.++.|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 240 IWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 2222233344455666666666663 334 4567888999999999999999999999887664
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.47 E-value=6.6e-11 Score=105.78 Aligned_cols=259 Identities=10% Similarity=-0.041 Sum_probs=135.8
Q ss_pred HHHhcCCChhhHHHHHHHHHhcCCCCchh----hHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcc-----hHHHHHHHH
Q 038550 131 VGYSQTSDCSESLSLFSEMRLLGMKHDVV----SFMGAISACANLAAIKQGKEIHGVTIRKHLHTH-----LFVANSILD 201 (423)
Q Consensus 131 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~ 201 (423)
..+...|++++|...+++........+.. .+..+...+...|++++|...+++......... ...+..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 33444555555655555555432111111 233444455555666666666655544221110 122334555
Q ss_pred HHHhcCCHHHHHHHhccCC-------C---C-ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC--C--CHHHHHHHH
Q 038550 202 FYTRSGRIDLANKIFDCLP-------V---K-DSASWNTLILGYGMLGEVDTAINLFEAMREDGVG--Y--DPVSYIAIL 266 (423)
Q Consensus 202 ~~~~~~~~~~A~~~~~~~~-------~---~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p--~~~~~~~ll 266 (423)
.+...|++++|...+++.. . + ....+..+...+...|++++|...+++....... + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 5666666666666555432 1 1 1223445556666677777777777766543211 1 123455566
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCCh-hhHH-----HHHHHHHhcCChHHHHHHHhhC-CCCCC-----HhHHHHHHH
Q 038550 267 TACSHGGLVEKGKKYFDEMQADSVKPTE-MHYA-----CMVDLLGRAGLMEDAVKLIKNL-PVEPD-----ANIWGALLG 334 (423)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~-~~~~~-----~~~~~~l~~ 334 (423)
..+...|++++|...+++.....-.++. ..+. ..+..+...|++++|...+++. ...|. ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 6667777777777777766544111111 1111 1223355677777777777666 21121 223455566
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCC------CcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 335 ACRIYGNVELGAWAAEHLFMLKPQ------HCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 335 ~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
.+...|++++|...++++....+. ...++..++.++...|++++|...+++....
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 677777777777777776554321 1124555666677777777777777766543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.46 E-value=4.3e-11 Score=103.90 Aligned_cols=209 Identities=12% Similarity=0.006 Sum_probs=110.0
Q ss_pred ccHHHHHHHHHHcCCCCchHHHHHHHHHHH-------hcCCh-------HHHHHHh----c-hhcCCcchHHHHHHHHhc
Q 038550 75 RPGKEIHARIIRKGLNFDLFLTNALTDMYA-------KCGCL-------NLAQNVF----N-ISFRDEVSYNILIVGYSQ 135 (423)
Q Consensus 75 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~a~~~~----~-~~~~~~~~~~~l~~~~~~ 135 (423)
+.|..+|++++... +.++..|..++..+. +.|++ ++|..+| . ..+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45556666666553 445556666655554 24665 6676666 2 233345567777777777
Q ss_pred CCChhhHHHHHHHHHhcCCCCc-hh-hHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHH-HhcCCHHHH
Q 038550 136 TSDCSESLSLFSEMRLLGMKHD-VV-SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFY-TRSGRIDLA 212 (423)
Q Consensus 136 ~~~~~~a~~~~~~m~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A 212 (423)
.|++++|..+|++..+. .|+ .. .|..++..+.+.|++++|..+|+...+..+. +...|....... ...|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHH
Confidence 77888888888877763 443 32 6777777777777777777777777765432 222222221111 113444444
Q ss_pred HHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 038550 213 NKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDG-VGY--DPVSYIAILTACSHGGLVEKGKKYFDEMQ 286 (423)
Q Consensus 213 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 286 (423)
..+|++.. +.+...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.+.|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444332 1233444444444444444444444444444431 222 22334444444444444444444444444
Q ss_pred H
Q 038550 287 A 287 (423)
Q Consensus 287 ~ 287 (423)
+
T Consensus 269 ~ 269 (308)
T 2ond_A 269 T 269 (308)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-10 Score=110.29 Aligned_cols=369 Identities=8% Similarity=-0.072 Sum_probs=220.6
Q ss_pred cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCC---CccHHHHHHHHHHcC-CCCchHHH
Q 038550 21 KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHF---LRPGKEIHARIIRKG-LNFDLFLT 96 (423)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~ 96 (423)
.|..+|..++..+.+.+.++.+..+|+.+... .+.+...|...+..-.+.++ ++.+..+|++.+... .+|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 36667777777777777777777777777765 34455566666666666666 777777777777553 13666666
Q ss_pred HHHHHHHHhcCCh--------HHHHHHhc-------h-hcCCcchHHHHHHHHhc---------CCChhhHHHHHHHHHh
Q 038550 97 NALTDMYAKCGCL--------NLAQNVFN-------I-SFRDEVSYNILIVGYSQ---------TSDCSESLSLFSEMRL 151 (423)
Q Consensus 97 ~~l~~~~~~~g~~--------~~a~~~~~-------~-~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~m~~ 151 (423)
...+....+.++. +...++|+ . ...+...|...+..... .++++.+..+|++.+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 6666555444443 22234441 1 12233456555544332 2235556666666664
Q ss_pred cCCCCchhhHH---HHHHHH----------HhHhhHHhh-----------------------------------------
Q 038550 152 LGMKHDVVSFM---GAISAC----------ANLAAIKQG----------------------------------------- 177 (423)
Q Consensus 152 ~~~~~~~~~~~---~ll~~~----------~~~~~~~~a----------------------------------------- 177 (423)
.....-..+|. .....+ -....++.|
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 21110111111 110000 000111112
Q ss_pred --------------------------hHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHH-HHhccCC---CCChhhH
Q 038550 178 --------------------------KEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN-KIFDCLP---VKDSASW 227 (423)
Q Consensus 178 --------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~---~~~~~~~ 227 (423)
..+|++++... +.....|-..+..+...|+.++|. .+|++.. +.+...|
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lw 381 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHH
Confidence 22233333321 123334444455555667777775 7776654 3355567
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCC---------CCC------------HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 038550 228 NTLILGYGMLGEVDTAINLFEAMREDGV---------GYD------------PVSYIAILTACSHGGLVEKGKKYFDEMQ 286 (423)
Q Consensus 228 ~~li~~~~~~g~~~~a~~~~~~m~~~~~---------~p~------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 286 (423)
-..+...-+.|+++.|..+|+.+..... .|+ ...|...+....+.|+.+.|..+|.++.
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777888899999999988876310 132 2356777777777888899999999988
Q ss_pred Hc-CCCCChhhHHHHHHHHHhc-CChHHHHHHHhhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC---C
Q 038550 287 AD-SVKPTEMHYACMVDLLGRA-GLMEDAVKLIKNL--PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ---H 359 (423)
Q Consensus 287 ~~-~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~ 359 (423)
+. + ......|...+..-.+. ++.+.|..+|+.. ...-+...|..++......|+.+.|..+|+++....|+ .
T Consensus 462 ~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~ 540 (679)
T 4e6h_A 462 RLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLL 540 (679)
T ss_dssp HTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHH
T ss_pred HhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 75 2 22333443333333344 4588999888876 22235667778888888889999999999999887763 4
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhcccc
Q 038550 360 CGYYILLSNMYAEAGKWDEASKVRELMKSREAK 392 (423)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 392 (423)
..+|..++..-.+.|+.+.+..+.+++.+....
T Consensus 541 ~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 541 KMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 466778888788889999999999998876543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-11 Score=110.34 Aligned_cols=219 Identities=10% Similarity=-0.032 Sum_probs=127.9
Q ss_pred HhHhhHHhhhHHHHHHHHhcc-----CcchHHHHHHHHHHHhcCCHHHHHHHhccCCC-----C-----ChhhHHHHHHH
Q 038550 169 ANLAAIKQGKEIHGVTIRKHL-----HTHLFVANSILDFYTRSGRIDLANKIFDCLPV-----K-----DSASWNTLILG 233 (423)
Q Consensus 169 ~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~-----~~~~~~~li~~ 233 (423)
...|++++|...++++.+... .....++..+..+|...|+++.|...+++... + ...+++.+...
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 344455555555554443211 01123344455555555555555554443320 1 13356666677
Q ss_pred HhccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHc----CCCCChhhHHHHHHHH
Q 038550 234 YGMLGEVDTAINLFEAMRED----GVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQAD----SVKPTEMHYACMVDLL 304 (423)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~ 304 (423)
|...|++++|...+++..+. +-.+ ...++..+..+|...|++++|...+++.... +.+....++..+...|
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 77777777777777765542 1111 1245666777777788888888888777662 2222356667777778
Q ss_pred HhcCChHHHHHHHhhC----CC--CC-CHhHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 038550 305 GRAGLMEDAVKLIKNL----PV--EP-DANIWGALLGACRIYGN---VELGAWAAEHLFMLKPQHCGYYILLSNMYAEAG 374 (423)
Q Consensus 305 ~~~~~~~~a~~~~~~~----~~--~~-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 374 (423)
.+.|++++|...+++. .. .| ....+..+...+...++ +.+|+..+++. ...|.....+..++..|...|
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCC
Confidence 8888888888777765 11 12 23344555556666677 66666666652 122333456677888888888
Q ss_pred ChhHHHHHHHHHHh
Q 038550 375 KWDEASKVRELMKS 388 (423)
Q Consensus 375 ~~~~A~~~~~~m~~ 388 (423)
++++|...+++..+
T Consensus 351 ~~~~A~~~~~~al~ 364 (378)
T 3q15_A 351 HFEQAAAFYRKVLK 364 (378)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888888765
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=9.9e-12 Score=114.58 Aligned_cols=190 Identities=8% Similarity=-0.114 Sum_probs=108.8
Q ss_pred chHHHHHHHHHHHhcCCh-HHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHH
Q 038550 92 DLFLTNALTDMYAKCGCL-NLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAIS 166 (423)
Q Consensus 92 ~~~~~~~l~~~~~~~g~~-~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 166 (423)
+...+..+..++...|++ ++|++.| +..+.+..+|..+..+|...|++++|...|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 344444455555555555 5555555 222334445555555555555555555555555543 344445555555
Q ss_pred HHHhH---------hhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhc--------CCHHHHHHHhccCC---C---CC
Q 038550 167 ACANL---------AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS--------GRIDLANKIFDCLP---V---KD 223 (423)
Q Consensus 167 ~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~~~---~---~~ 223 (423)
.+... |++++|...++++.+..+ .+...+..+..+|... |++++|...|++.. + .+
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 257 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence 55555 555555555555555432 2244445555555555 55666666555443 1 35
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 038550 224 SASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEM 285 (423)
Q Consensus 224 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 285 (423)
...|..+..+|...|++++|...|++..+... -+...+..+..++...|++++|...+.++
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 56677777777777788888888877776532 24556777777777777777777665544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=8.2e-12 Score=103.36 Aligned_cols=189 Identities=12% Similarity=-0.045 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHhccCC---C-CChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038550 193 LFVANSILDFYTRSGRIDLANKIFDCLP---V-KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA 268 (423)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 268 (423)
+..+......+...|++++|...|++.. + ++...+..+..++...|++++|+..+++..+.... +...+..+..+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHH
Confidence 3455556666666666666666666543 2 45555555666666666666666666666654221 34456666666
Q ss_pred HhccCcHHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC---HhHHHHHHHHHH
Q 038550 269 CSHGGLVEKGKKYFDEMQADSVKPTE-------MHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD---ANIWGALLGACR 337 (423)
Q Consensus 269 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~---~~~~~~l~~~~~ 337 (423)
+...|++++|...+++..+.. +.+. ..|..+...+...|++++|++.|++. ...|+ ...+..+...+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 666666666666666666642 2223 33555555666666666666666655 44454 334445555543
Q ss_pred hcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 338 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
.. +...++++....+.++..+.... ....+.+++|+..+++..+..
T Consensus 165 ~~-----~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 165 NN-----GADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HH-----HHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HH-----HHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 33 23344555555544444433332 334455699999999988754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.40 E-value=3.6e-11 Score=95.63 Aligned_cols=168 Identities=13% Similarity=-0.008 Sum_probs=142.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038550 193 LFVANSILDFYTRSGRIDLANKIFDCLPV---KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC 269 (423)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 269 (423)
...+..+...+...|++++|...++++.. .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34456677888899999999999998763 367788889999999999999999999998763 33678888899999
Q ss_pred hccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHH
Q 038550 270 SHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAW 347 (423)
Q Consensus 270 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~ 347 (423)
...|++++|...++++.... +.+...+..+...+...|++++|...++++ ...| +...+..+...+...|++++|..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999998874 557788888999999999999999999887 3333 67888999999999999999999
Q ss_pred HHHHHHhcCCCCcch
Q 038550 348 AAEHLFMLKPQHCGY 362 (423)
Q Consensus 348 ~~~~~~~~~p~~~~~ 362 (423)
.++++.+..|.+...
T Consensus 166 ~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 166 HFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHCCCGG
T ss_pred HHHHHHHcCCCchhh
Confidence 999999988776543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.4e-11 Score=99.60 Aligned_cols=205 Identities=9% Similarity=0.016 Sum_probs=160.7
Q ss_pred CCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHH
Q 038550 155 KHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLI 231 (423)
Q Consensus 155 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li 231 (423)
+.|+..+......+...|++++|...|+...+....++...+..+..++...|++++|...|++.. +.+...|..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 346678888999999999999999999999998765666777779999999999999999998765 33567899999
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC---hhhHHHHH
Q 038550 232 LGYGMLGEVDTAINLFEAMREDGVGYDP-------VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT---EMHYACMV 301 (423)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 301 (423)
..+...|++++|...+++..+... .+. ..|..+...+...|++++|...|+++.+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 999999999999999999988642 244 45788888899999999999999999885 344 56777777
Q ss_pred HHHHhcCChHHHHHHHhhC-C-CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHH
Q 038550 302 DLLGRAGLMEDAVKLIKNL-P-VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNM 369 (423)
Q Consensus 302 ~~~~~~~~~~~a~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 369 (423)
.+|...|+. .++++ . ...+...+.... ....+.+++|+..++++.+..|.++.+...+...
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 887766543 22222 1 122344444433 3455678999999999999999998887776554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-10 Score=104.15 Aligned_cols=195 Identities=9% Similarity=-0.002 Sum_probs=127.2
Q ss_pred hHHHHHHHHHhHhhHHhhhHHHHHHHHhccC------cchHHHHHHHHHHHhcCCHHHHHHHhccCCC-----C----Ch
Q 038550 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLH------THLFVANSILDFYTRSGRIDLANKIFDCLPV-----K----DS 224 (423)
Q Consensus 160 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~----~~ 224 (423)
++..+...+...|+++.|...+++..+.... ....+++.+..+|...|++++|...|++... + ..
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 222 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3444444455555555555555444432110 1123444555555566666665555544321 1 12
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHH-----cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC----CCChh
Q 038550 225 ASWNTLILGYGMLGEVDTAINLFEAMRE-----DGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV----KPTEM 295 (423)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~ 295 (423)
.++..+...|...|++++|...+++..+ .. +....++..+..++.+.|++++|...+++..+... +....
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 301 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE 301 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4567777888888888888888888776 32 22366788888899999999999999999887521 11233
Q ss_pred hHHHHHHHHHhcCC---hHHHHHHHhhCCCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 296 HYACMVDLLGRAGL---MEDAVKLIKNLPVEPD-ANIWGALLGACRIYGNVELGAWAAEHLFML 355 (423)
Q Consensus 296 ~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 355 (423)
.+..+...|...++ +.+|+..+++.+..|+ ...+..+...|...|++++|...++++.+.
T Consensus 302 ~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 302 LFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45555566667777 8899999998764443 346677888999999999999999988764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.35 E-value=4.4e-10 Score=100.40 Aligned_cols=261 Identities=8% Similarity=-0.048 Sum_probs=146.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhchhCCCCCCch----hHHHHHHHhhcCCCCccHHHHHHHHHHcCCC-Cc----hHHH
Q 038550 26 WNAMVANFAQNRLELKALQLVREMPIHNEFPNSV----TLTNVLPACARGHFLRPGKEIHARIIRKGLN-FD----LFLT 96 (423)
Q Consensus 26 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~ 96 (423)
+......+...|++++|...+++........+.. ++..+...+...|+++.|...+++....... ++ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556778899999999998877653211221 4555666677889999999888887653211 11 2335
Q ss_pred HHHHHHHHhcCChHHHHHHhc----hh----c---C-CcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCC--C--chhh
Q 038550 97 NALTDMYAKCGCLNLAQNVFN----IS----F---R-DEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMK--H--DVVS 160 (423)
Q Consensus 97 ~~l~~~~~~~g~~~~a~~~~~----~~----~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--~--~~~~ 160 (423)
..+...+...|++++|...++ .. . + ....+..+...+...|++++|...+++....... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 566777788888888887771 11 1 1 1234556667777788888888888777654211 1 1234
Q ss_pred HHHHHHHHHhHhhHHhhhHHHHHHHHhccCcc--hHHHH----HHHHHHHhcCCHHHHHHHhccCCCCC-------hhhH
Q 038550 161 FMGAISACANLAAIKQGKEIHGVTIRKHLHTH--LFVAN----SILDFYTRSGRIDLANKIFDCLPVKD-------SASW 227 (423)
Q Consensus 161 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~ 227 (423)
+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...++....+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 55666677777777777777777665422211 11111 12233556666666666666554321 1123
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHH
Q 038550 228 NTLILGYGMLGEVDTAINLFEAMRED----GVGYDP-VSYIAILTACSHGGLVEKGKKYFDEMQ 286 (423)
Q Consensus 228 ~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~ 286 (423)
..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44445555555555555555554321 111111 133333444445555555555554444
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3.2e-09 Score=100.84 Aligned_cols=356 Identities=6% Similarity=-0.050 Sum_probs=229.6
Q ss_pred ccCCcchhHHhhcccCC---cChhhHHHHHHHHHhCCC---hHHHHHHHhhchhCC-CCCCchhHHHHHHHhhcCCCC--
Q 038550 4 KSSRPAEASYLFHNIAE---KNIVSWNAMVANFAQNRL---ELKALQLVREMPIHN-EFPNSVTLTNVLPACARGHFL-- 74 (423)
Q Consensus 4 ~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~-- 74 (423)
+.|.++.+..+|+++.. .+...|...+..-.+.++ ++.+.++|++..... .+|+...|..-+....+.++.
T Consensus 78 ~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~ 157 (679)
T 4e6h_A 78 SLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIIT 157 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTT
T ss_pred hcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccccc
Confidence 34677788888888765 345567777777777777 888888888887653 136777777766655544443
Q ss_pred ------ccHHHHHHHHHH-cCC-CCc-hHHHHHHHHHHH---------hcCChHHHHHHh-c-hhcCCc---chH-----
Q 038550 75 ------RPGKEIHARIIR-KGL-NFD-LFLTNALTDMYA---------KCGCLNLAQNVF-N-ISFRDE---VSY----- 126 (423)
Q Consensus 75 ------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~---------~~g~~~~a~~~~-~-~~~~~~---~~~----- 126 (423)
+.+.++|+..+. .|. .++ ...|...+.... ..++++.+..+| . ...|.. .+|
T Consensus 158 ~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~ 237 (679)
T 4e6h_A 158 GGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ 237 (679)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 223466666553 354 443 456666655432 223455566666 1 111100 011
Q ss_pred --------------------------------------------------------------------HHHHHHHhcCC-
Q 038550 127 --------------------------------------------------------------------NILIVGYSQTS- 137 (423)
Q Consensus 127 --------------------------------------------------------------------~~l~~~~~~~~- 137 (423)
...+..--..+
T Consensus 238 fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~ 317 (679)
T 4e6h_A 238 WEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKL 317 (679)
T ss_dssp HHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTT
T ss_pred HHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCc
Confidence 11111100000
Q ss_pred ------ChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhh-HHHHHHHHhccCcchHHHHHHHHHHHhcCCHH
Q 038550 138 ------DCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGK-EIHGVTIRKHLHTHLFVANSILDFYTRSGRID 210 (423)
Q Consensus 138 ------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 210 (423)
..+.+..+|++.+.. ++-+...|...+..+...|+.+.|. .+++..... .+.+...+-..+....+.|+++
T Consensus 318 ~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e 395 (679)
T 4e6h_A 318 ELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIP 395 (679)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHH
T ss_pred cccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHH
Confidence 011122334444433 1233444545555556677888886 999998864 3445666777888889999999
Q ss_pred HHHHHhccCCC-------------CC------------hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038550 211 LANKIFDCLPV-------------KD------------SASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAI 265 (423)
Q Consensus 211 ~A~~~~~~~~~-------------~~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 265 (423)
.|.++|+.+.. |+ ..+|...+....+.|+.+.|..+|.+..+.-..+....|...
T Consensus 396 ~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~ 475 (679)
T 4e6h_A 396 EIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLEN 475 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 99999987752 21 235777788878889999999999999876111223344433
Q ss_pred HHHHhc-cCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC----CHhHHHHHHHHHHhc
Q 038550 266 LTACSH-GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP----DANIWGALLGACRIY 339 (423)
Q Consensus 266 l~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~----~~~~~~~l~~~~~~~ 339 (423)
+..-.+ .++.+.|..+|+...+. ++.+...+...++.....|+.+.|..+|++. ...| ....|..++..-...
T Consensus 476 A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~ 554 (679)
T 4e6h_A 476 AYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKV 554 (679)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Confidence 333233 35689999999999987 4556677778888888899999999999987 3334 346888888888999
Q ss_pred CChhHHHHHHHHHHhcCCCCcch
Q 038550 340 GNVELGAWAAEHLFMLKPQHCGY 362 (423)
Q Consensus 340 ~~~~~a~~~~~~~~~~~p~~~~~ 362 (423)
|+.+.+..+.+++.+..|+++.+
T Consensus 555 G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 555 GSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp CCSHHHHHHHHHHHHHSTTCCHH
T ss_pred CCHHHHHHHHHHHHHhCCCCcHH
Confidence 99999999999999999987543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=4.8e-11 Score=102.69 Aligned_cols=163 Identities=9% Similarity=-0.041 Sum_probs=95.6
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhcc-CcHHHHHHHHHHHHHcCCC-CC----
Q 038550 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVG-YD----PVSYIAILTACSHG-GLVEKGKKYFDEMQADSVK-PT---- 293 (423)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~-~~---- 293 (423)
.+|+.+...|...|++++|+..+++..+.... .+ ..++..+...|... |++++|...|++..+.... .+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 45566666666666666666666665442100 01 24566677777775 7788887777777664110 01
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC---H-----hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcch--
Q 038550 294 EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD---A-----NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGY-- 362 (423)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~---~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-- 362 (423)
..++..+...|.+.|++++|+..|++. .+.|+ . ..+..+..++...|++++|+..++++.++.|.....
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 345667777777788888888777766 22221 1 145666667777788888888888887777765442
Q ss_pred ---HHHHHHHHH--hcCChhHHHHHHHHHH
Q 038550 363 ---YILLSNMYA--EAGKWDEASKVRELMK 387 (423)
Q Consensus 363 ---~~~l~~~~~--~~g~~~~A~~~~~~m~ 387 (423)
+..++.++. ..+++++|+..|+++.
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 333444443 3456677776665543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=8.7e-11 Score=112.82 Aligned_cols=163 Identities=9% Similarity=-0.070 Sum_probs=143.8
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHH
Q 038550 22 NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTD 101 (423)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 101 (423)
+..+|+.|...+.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|+..|++.++.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 46789999999999999999999999998864 2246789999999999999999999999999885 456789999999
Q ss_pred HHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhh
Q 038550 102 MYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177 (423)
Q Consensus 102 ~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 177 (423)
+|...|++++|++.| +..+.+..+|+.+..+|...|++++|++.|++..+.. +-+...+..+..++...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 999999999999999 4556678899999999999999999999999999864 44567899999999999999999
Q ss_pred hHHHHHHHHh
Q 038550 178 KEIHGVTIRK 187 (423)
Q Consensus 178 ~~~~~~~~~~ 187 (423)
.+.++++.+.
T Consensus 165 ~~~~~kal~l 174 (723)
T 4gyw_A 165 DERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9998887653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-09 Score=92.52 Aligned_cols=179 Identities=11% Similarity=0.008 Sum_probs=97.5
Q ss_pred hhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC-----CChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 038550 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-----KDSASWNTLILGYGMLGEVDTAINLFEAMR 251 (423)
Q Consensus 177 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 251 (423)
+...+++....+ .++...+..+..++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666655544 23333334566666666777777776665521 234455566666666777777777777666
Q ss_pred HcCCCC-----CHHHHHHHHHH--HhccC--cHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-C
Q 038550 252 EDGVGY-----DPVSYIAILTA--CSHGG--LVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-P 321 (423)
Q Consensus 252 ~~~~~p-----~~~~~~~ll~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~ 321 (423)
+. .| +..+...+..+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+ .
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 34 23444444444 22223 666667777766543 233222233333666667777776666543 1
Q ss_pred C----------CC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcch
Q 038550 322 V----------EP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGY 362 (423)
Q Consensus 322 ~----------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 362 (423)
. .| |+.+...++......|+ +|.++++++.+..|+++.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 1 13 44445344444444454 5666666666666666533
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-11 Score=104.35 Aligned_cols=153 Identities=10% Similarity=0.013 Sum_probs=78.0
Q ss_pred hcCCChhhHHHHHHHHHhc-------CCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhc------c-CcchHHHHHH
Q 038550 134 SQTSDCSESLSLFSEMRLL-------GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH------L-HTHLFVANSI 199 (423)
Q Consensus 134 ~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~-~~~~~~~~~l 199 (423)
...|++++|+..+++..+. ..+....++..+...+...|++++|...++++.+.. . +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3466777777777766542 112234566677777777788888887777766541 1 1223444555
Q ss_pred HHHHHhcCCHHHHHHHhccCCC-------C----ChhhHHHHHHHHhccCCHHHHHHHHHHHHHc------CCCC-CHHH
Q 038550 200 LDFYTRSGRIDLANKIFDCLPV-------K----DSASWNTLILGYGMLGEVDTAINLFEAMRED------GVGY-DPVS 261 (423)
Q Consensus 200 ~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~ 261 (423)
..+|...|++++|...|++... + ...++..+...+...|++++|...+++..+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 5555555665555555544321 0 1233444444455555555555555544432 0011 1233
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHH
Q 038550 262 YIAILTACSHGGLVEKGKKYFDEMQ 286 (423)
Q Consensus 262 ~~~ll~~~~~~~~~~~a~~~~~~~~ 286 (423)
+..+..++...|++++|..+++++.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444455555555444444
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-10 Score=100.27 Aligned_cols=245 Identities=11% Similarity=-0.012 Sum_probs=151.1
Q ss_pred ccHHHHHHHHHHcCCCCchHHHHHHHHHHHhc--C-ChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHh
Q 038550 75 RPGKEIHARIIRKGLNFDLFLTNALTDMYAKC--G-CLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRL 151 (423)
Q Consensus 75 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g-~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 151 (423)
.+|.+++.+..+.- ++....+ . +.+. + ++++|...| ......|...|++++|...|++...
T Consensus 2 ~~a~~~~~~a~k~~-~~~~~~~-~----~~~~~~~~~~~~A~~~~----------~~a~~~~~~~g~~~~A~~~~~~al~ 65 (292)
T 1qqe_A 2 SDPVELLKRAEKKG-VPSSGFM-K----LFSGSDSYKFEEAADLC----------VQAATIYRLRKELNLAGDSFLKAAD 65 (292)
T ss_dssp CCHHHHHHHHHHHS-SCCCTHH-H----HHSCCSHHHHHHHHHHH----------HHHHHHHHHTTCTHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHh-CcCCCcc-h----hcCCCCCccHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666666666552 2221112 1 1232 2 477776665 3346778888888888888887755
Q ss_pred c----CCCCc-hhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhh
Q 038550 152 L----GMKHD-VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSAS 226 (423)
Q Consensus 152 ~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 226 (423)
. |-+++ ..+|..+..++...|++++|...+++..+. +...|+...+ ..+
T Consensus 66 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~~~~g~~~~~-----------a~~ 119 (292)
T 1qqe_A 66 YQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI---------------FTHRGQFRRG-----------ANF 119 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHTTCHHHH-----------HHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------HHHcCCHHHH-----------HHH
Confidence 3 21111 346777777777777777777777666542 1222333222 234
Q ss_pred HHHHHHHHhcc-CCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCh------
Q 038550 227 WNTLILGYGML-GEVDTAINLFEAMREDGVG-YD----PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE------ 294 (423)
Q Consensus 227 ~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------ 294 (423)
++.+...|... |++++|+..|++..+.... .+ ..++..+...+...|++++|...|++..+.......
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 66677777775 8888888888877653110 01 346777888888899999999999888876322211
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCHh------HHHHHHHHHH--hcCChhHHHHHHHHHHhcCCCCcc
Q 038550 295 MHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDAN------IWGALLGACR--IYGNVELGAWAAEHLFMLKPQHCG 361 (423)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~------~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~ 361 (423)
..|..+..++...|++++|...|++. .+.|+.. .+..++.++. ..+++++|+..|+++..++|....
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence 14666777888889999999998887 4455322 2344555553 456688888888777777765433
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.25 E-value=3e-10 Score=84.95 Aligned_cols=128 Identities=15% Similarity=0.203 Sum_probs=84.5
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CC-CCCHhHHHHHHHHHHhc
Q 038550 262 YIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PV-EPDANIWGALLGACRIY 339 (423)
Q Consensus 262 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~ 339 (423)
+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++ .. ..+...+..+...+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 4444555555566666666666555542 234445555555566666666666666555 11 22455666677777788
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 340 GNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 340 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
|++++|...++++.+..|.++..+..++..+...|++++|...++++.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 888888888888888888777788888888888888888888888876543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-10 Score=98.43 Aligned_cols=145 Identities=18% Similarity=0.128 Sum_probs=62.2
Q ss_pred HhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC-----------CChhhHHHHHHHHhccCCHHHH
Q 038550 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-----------KDSASWNTLILGYGMLGEVDTA 243 (423)
Q Consensus 175 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~a 243 (423)
++|.++++.+.....+....++..+...|...|++++|...+++... ....++..+...|...|++++|
T Consensus 25 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 104 (283)
T 3edt_B 25 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA 104 (283)
T ss_dssp HHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHH
Confidence 34444444433322222334444445555555555555544443320 0123344444455555555555
Q ss_pred HHHHHHHHHc------CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHc------CCCC-ChhhHHHHHHHHHhcCC
Q 038550 244 INLFEAMRED------GVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQAD------SVKP-TEMHYACMVDLLGRAGL 309 (423)
Q Consensus 244 ~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~ 309 (423)
...+++..+. .-.| ...++..+...+...|++++|..+++++.+. +-.| ...++..+...|...|+
T Consensus 105 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 184 (283)
T 3edt_B 105 EPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK 184 (283)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Confidence 5555544332 0011 1234444444455555555555555544433 0011 13344444455555555
Q ss_pred hHHHHHHHhh
Q 038550 310 MEDAVKLIKN 319 (423)
Q Consensus 310 ~~~a~~~~~~ 319 (423)
+++|...+++
T Consensus 185 ~~~A~~~~~~ 194 (283)
T 3edt_B 185 YQDAETLYKE 194 (283)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.7e-11 Score=92.88 Aligned_cols=141 Identities=11% Similarity=-0.001 Sum_probs=96.6
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 038550 232 LGYGMLGEVDTAINLFEAMREDGVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310 (423)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 310 (423)
..+...|++++|+..++..... .| +...+..+...|.+.|++++|...|++..+.. +-+..+|..+..+|...|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 3445566777777777766543 22 23355566777777788888888887777753 34566777777777778888
Q ss_pred HHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHH-HHHHHhcCCCCcchHHHHHHHHHhcCC
Q 038550 311 EDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWA-AEHLFMLKPQHCGYYILLSNMYAEAGK 375 (423)
Q Consensus 311 ~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 375 (423)
++|+..|++. .+.| +...+..+...|.+.|++++|... ++++.+++|.++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888777776 4455 466777777777788877665544 577888888888887777777766664
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.8e-09 Score=88.98 Aligned_cols=181 Identities=11% Similarity=-0.007 Sum_probs=113.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhccCCC--CC----hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CCH-HHHHHHH
Q 038550 195 VANSILDFYTRSGRIDLANKIFDCLPV--KD----SASWNTLILGYGMLGEVDTAINLFEAMREDGVG-YDP-VSYIAIL 266 (423)
Q Consensus 195 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~-~~~~~ll 266 (423)
.+..+...+.+.|++++|...|+++.. |+ ...+..+..++.+.|++++|+..|+++.+.... +.. ..+..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 344456667777777777777776652 22 245666677777777777777777777764322 111 1344444
Q ss_pred HHHhc------------------cCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhH
Q 038550 267 TACSH------------------GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANI 328 (423)
Q Consensus 267 ~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 328 (423)
.++.. .|++++|...|+++.+.. +-+...+...... +...... ...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----~~~~~~~-----------~~~ 149 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----VFLKDRL-----------AKY 149 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----HHHHHHH-----------HHH
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----HHHHHHH-----------HHH
Confidence 44432 456666666666666541 1112222111110 0000000 001
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 329 WGALLGACRIYGNVELGAWAAEHLFMLKPQHC---GYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 329 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
...+...+...|++++|+..++++.+..|.++ .++..++.+|.+.|++++|++.++.+...+.
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 13456678899999999999999999999876 5688899999999999999999999887654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.7e-10 Score=94.26 Aligned_cols=164 Identities=15% Similarity=0.040 Sum_probs=95.4
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCC--C-C---hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHH
Q 038550 198 SILDFYTRSGRIDLANKIFDCLPV--K-D---SASWNTLILGYGMLGEVDTAINLFEAMREDGV-GYD-PVSYIAILTAC 269 (423)
Q Consensus 198 ~l~~~~~~~~~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~-~~~~~~ll~~~ 269 (423)
.+...+.+.|++++|...|+.+.. | + ...+..+..+|.+.|++++|...|++..+... .|. ...+..+..++
T Consensus 20 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~ 99 (261)
T 3qky_A 20 ERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCY 99 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHH
Confidence 344444455555555555544431 1 2 34455555666666666666666666665421 111 33455555556
Q ss_pred hc--------cCcHHHHHHHHHHHHHcCCCCChhhH-----------------HHHHHHHHhcCChHHHHHHHhhC-CCC
Q 038550 270 SH--------GGLVEKGKKYFDEMQADSVKPTEMHY-----------------ACMVDLLGRAGLMEDAVKLIKNL-PVE 323 (423)
Q Consensus 270 ~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~a~~~~~~~-~~~ 323 (423)
.. .|++++|...|+++.+.. +.+.... ..+...|.+.|++++|+..|+++ ...
T Consensus 100 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 178 (261)
T 3qky_A 100 YKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY 178 (261)
T ss_dssp HHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 55 667777777777666642 1122222 34566777788888888877776 223
Q ss_pred CC----HhHHHHHHHHHHhc----------CChhHHHHHHHHHHhcCCCCcch
Q 038550 324 PD----ANIWGALLGACRIY----------GNVELGAWAAEHLFMLKPQHCGY 362 (423)
Q Consensus 324 ~~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~ 362 (423)
|+ ...+..+..+|... |++++|+..++++.+..|+++.+
T Consensus 179 p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 179 PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 32 34566666666655 77788888888888888877543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.18 E-value=7.4e-10 Score=93.57 Aligned_cols=169 Identities=11% Similarity=-0.029 Sum_probs=137.0
Q ss_pred CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-C-CChh
Q 038550 221 VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD---PVSYIAILTACSHGGLVEKGKKYFDEMQADSV-K-PTEM 295 (423)
Q Consensus 221 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~ 295 (423)
+.+...+..+...+.+.|++++|...|+++.+.... + ...+..+..++...|++++|...|+++.+... . ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 346677778888899999999999999999886422 3 57888899999999999999999999998731 1 2245
Q ss_pred hHHHHHHHHHh--------cCChHHHHHHHhhC-CCCCC-HhHH-----------------HHHHHHHHhcCChhHHHHH
Q 038550 296 HYACMVDLLGR--------AGLMEDAVKLIKNL-PVEPD-ANIW-----------------GALLGACRIYGNVELGAWA 348 (423)
Q Consensus 296 ~~~~l~~~~~~--------~~~~~~a~~~~~~~-~~~~~-~~~~-----------------~~l~~~~~~~~~~~~a~~~ 348 (423)
.+..+..++.. .|++++|+..|+++ ...|+ .... ..+...|...|++++|+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 66777888888 99999999999987 33342 2233 4567889999999999999
Q ss_pred HHHHHhcCCCCc---chHHHHHHHHHhc----------CChhHHHHHHHHHHhcc
Q 038550 349 AEHLFMLKPQHC---GYYILLSNMYAEA----------GKWDEASKVRELMKSRE 390 (423)
Q Consensus 349 ~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~ 390 (423)
++++.+..|.++ .++..++.+|... |++++|+..++++.+..
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 999999998854 4788888888876 89999999999998754
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=5.4e-10 Score=95.79 Aligned_cols=172 Identities=8% Similarity=-0.050 Sum_probs=137.1
Q ss_pred HHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC
Q 038550 214 KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT 293 (423)
Q Consensus 214 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 293 (423)
..+....+.+...+..+...+...|++++|...|++..+... -+...+..+...+...|++++|...++++... .|+
T Consensus 107 ~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~ 183 (287)
T 3qou_A 107 ALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQD 183 (287)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCS
T ss_pred HHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcc
Confidence 333333344556677778888899999999999999988642 26778888999999999999999999988775 344
Q ss_pred hhhHHH-HHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--cchHHHHHH
Q 038550 294 EMHYAC-MVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH--CGYYILLSN 368 (423)
Q Consensus 294 ~~~~~~-l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~ 368 (423)
...... ....+...++.++|...+++. ...| +...+..+...+...|++++|+..++++.+.+|.+ ...+..++.
T Consensus 184 ~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 184 TRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 433222 233366777888888888876 4455 67889999999999999999999999999999988 788999999
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 038550 369 MYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 369 ~~~~~g~~~~A~~~~~~m~~ 388 (423)
.|...|+.++|...+++...
T Consensus 264 ~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 264 ILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999887654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.7e-11 Score=113.58 Aligned_cols=169 Identities=10% Similarity=-0.072 Sum_probs=139.3
Q ss_pred HhcCCHHHHHHHhccCC-----------CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 038550 204 TRSGRIDLANKIFDCLP-----------VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272 (423)
Q Consensus 204 ~~~~~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 272 (423)
...|++++|.+.+++.. +.+...+..+..++...|++++|...|++..+... -+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 67889999998887665 34667888888899999999999999999887642 2677888888899999
Q ss_pred CcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHH
Q 038550 273 GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAE 350 (423)
Q Consensus 273 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 350 (423)
|++++|...|+++.+.. +-+...+..+..+|.+.|++++ ++.|++. ...| +...|..+..++...|++++|+..|+
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999998864 4467778888899999999999 8888887 4455 66788889999999999999999999
Q ss_pred HHHhcCCCCcchHHHHHHHHHhcCC
Q 038550 351 HLFMLKPQHCGYYILLSNMYAEAGK 375 (423)
Q Consensus 351 ~~~~~~p~~~~~~~~l~~~~~~~g~ 375 (423)
++.+.+|.+..++..++.++...++
T Consensus 559 ~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 559 EVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TSCTTSTTHHHHHHHHHHHTC----
T ss_pred hhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999998999888888876555
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.8e-09 Score=80.58 Aligned_cols=131 Identities=16% Similarity=0.238 Sum_probs=105.5
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (423)
.|..+...+...|++++|..+++++.+... .+...+..+...+...|++++|..+++++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 466777788888889999988888877642 366778888888888899999999998888764 445677788888888
Q ss_pred hcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 038550 306 RAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358 (423)
Q Consensus 306 ~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 358 (423)
..|++++|...++++ ...| +...+..+...+...|++++|...++++.+..|.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 999999999988877 2233 5777888888899999999999999999888775
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.13 E-value=7.3e-09 Score=87.61 Aligned_cols=175 Identities=9% Similarity=0.014 Sum_probs=128.4
Q ss_pred HHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038550 212 ANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVG-YDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287 (423)
Q Consensus 212 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 287 (423)
|...|++.. .++..++..+..++...|++++|++++.+....+.. -+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 566666554 345556667788888899999999999988766532 2556777888889999999999999999977
Q ss_pred cCCCC-----ChhhHHHHHHHH--HhcC--ChHHHHHHHhhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhc--
Q 038550 288 DSVKP-----TEMHYACMVDLL--GRAG--LMEDAVKLIKNL-PVEPDANIWGALLGACRIYGNVELGAWAAEHLFML-- 355 (423)
Q Consensus 288 ~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 355 (423)
. .| +..+...|..++ ...| ++.+|..+|+++ ...|+..+-..++.++.+.|++++|+..++.+.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 4 45 345555566553 3334 899999999988 43455344444555888999999999999877765
Q ss_pred --------CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 356 --------KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 356 --------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
+|.++.+...++......|+ +|.++++++.+..
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 48888888777766667776 8888888887754
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-09 Score=103.14 Aligned_cols=160 Identities=11% Similarity=-0.026 Sum_probs=125.2
Q ss_pred cCCHHHHHHHhccCCC---CChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 038550 206 SGRIDLANKIFDCLPV---KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF 282 (423)
Q Consensus 206 ~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 282 (423)
.|++++|...|++..+ .+...|..+...+...|++++|.+.+++..+... .+...+..+..+|...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999988763 3577899999999999999999999999988642 36788999999999999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhc---CChhHHHHHHHHHHhcCC
Q 038550 283 DEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIY---GNVELGAWAAEHLFMLKP 357 (423)
Q Consensus 283 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p 357 (423)
++..+.. +.+...+..+..+|.+.|++++|.+.|++. ...| +...+..+...+... |++++|...++++.+.+|
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 9999874 456788889999999999999999999987 4445 577888899999999 999999999999999999
Q ss_pred CCcchHHHHH
Q 038550 358 QHCGYYILLS 367 (423)
Q Consensus 358 ~~~~~~~~l~ 367 (423)
.+...+..+.
T Consensus 160 ~~~~~~~~l~ 169 (568)
T 2vsy_A 160 GAVEPFAFLS 169 (568)
T ss_dssp CCSCHHHHTT
T ss_pred cccChHHHhC
Confidence 9888887775
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.10 E-value=7.1e-10 Score=87.51 Aligned_cols=157 Identities=9% Similarity=0.021 Sum_probs=96.5
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhc
Q 038550 229 TLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL-LGRA 307 (423)
Q Consensus 229 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 307 (423)
.+...+...|++++|...+++..+.. +-+...+..+..++...|++++|...++++.... |+...+..+... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence 34444555556666665555544431 1134455555555666666666666665554432 232222211111 1111
Q ss_pred CChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--cchHHHHHHHHHhcCChhHHHHHH
Q 038550 308 GLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH--CGYYILLSNMYAEAGKWDEASKVR 383 (423)
Q Consensus 308 ~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~ 383 (423)
+...+|...+++. ...| +...+..+...+...|++++|...++++.+..|.. +..+..++.++...|+.++|...|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2223355566555 3345 57778888888889999999999999999888765 458888888999999999999888
Q ss_pred HHHHh
Q 038550 384 ELMKS 388 (423)
Q Consensus 384 ~~m~~ 388 (423)
++...
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.4e-10 Score=87.49 Aligned_cols=124 Identities=13% Similarity=0.025 Sum_probs=104.0
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCCh
Q 038550 265 ILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNV 342 (423)
Q Consensus 265 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~ 342 (423)
|...+...|++++|+..++...... +-+...+..+...|.+.|++++|++.|++. .+.| +...|..+...+...|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 4456777899999999999887642 234556677899999999999999999988 5566 678999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHH-HHHHHhc
Q 038550 343 ELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKV-RELMKSR 389 (423)
Q Consensus 343 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~ 389 (423)
++|+..|+++.+.+|.++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999887765 5777664
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.09 E-value=1e-08 Score=83.40 Aligned_cols=161 Identities=9% Similarity=-0.063 Sum_probs=116.9
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHHHHcCCCCChhhHH
Q 038550 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGG----LVEKGKKYFDEMQADSVKPTEMHYA 298 (423)
Q Consensus 223 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 298 (423)
++..+..+...|...+++++|..+|++..+.| +...+..+...|.. + ++++|..+|++..+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 55556666666666777777777777777654 55666667666666 5 7888888888877654 445666
Q ss_pred HHHHHHHh----cCChHHHHHHHhhC-CCCCC---HhHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCcchHHHH
Q 038550 299 CMVDLLGR----AGLMEDAVKLIKNL-PVEPD---ANIWGALLGACRI----YGNVELGAWAAEHLFMLKPQHCGYYILL 366 (423)
Q Consensus 299 ~l~~~~~~----~~~~~~a~~~~~~~-~~~~~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l 366 (423)
.|...|.. .+++++|+++|++. ...|+ +..+..|...|.. .+++++|...|+++.+. |.++..+..|
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~L 168 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWA 168 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHH
Confidence 67677766 67888888888877 33342 6777777777777 77888888888888887 5566678888
Q ss_pred HHHHHhc-C-----ChhHHHHHHHHHHhccc
Q 038550 367 SNMYAEA-G-----KWDEASKVRELMKSREA 391 (423)
Q Consensus 367 ~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 391 (423)
+.+|... | ++++|..++++..+.|.
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8887654 2 78889988888887764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.05 E-value=2.6e-07 Score=85.18 Aligned_cols=355 Identities=9% Similarity=-0.066 Sum_probs=206.7
Q ss_pred ccC-CcchhHHhhcccCC--cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCC-CCccHHH
Q 038550 4 KSS-RPAEASYLFHNIAE--KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGH-FLRPGKE 79 (423)
Q Consensus 4 ~~g-~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~ 79 (423)
+.| +++.|..+|+++.. |. |+++.+..+|++.... .|+...|...+....+.+ ..+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 345 37777777777654 43 7899999999998874 478888888887766655 3467778
Q ss_pred HHHHHHHc-CC-CCchHHHHHHHHHHH----hcCChHHHHHHhc-h-hcCCc---chHHHHHHHHh-------------c
Q 038550 80 IHARIIRK-GL-NFDLFLTNALTDMYA----KCGCLNLAQNVFN-I-SFRDE---VSYNILIVGYS-------------Q 135 (423)
Q Consensus 80 ~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~g~~~~a~~~~~-~-~~~~~---~~~~~l~~~~~-------------~ 135 (423)
+|+..+.. |. +++...|...+..+. ..++++.+.++|+ . ..|.. ..|......-. .
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDT 149 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 88887764 43 345677777766543 2456778888882 1 12211 11221111100 0
Q ss_pred CCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhH-------hhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCC
Q 038550 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL-------AAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208 (423)
Q Consensus 136 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 208 (423)
.+.+..|..+++.+...--..+...|...+..-... +..+.+..+|++++...+ .....|-..+..+.+.|+
T Consensus 150 ~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~ 228 (493)
T 2uy1_A 150 LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQ 228 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCC
Confidence 112333444444443210001222343333332211 113456678888877543 446677777888888999
Q ss_pred HHHHHHHhccCC--CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcC---------CCC---CHHHHHHHHHHHhccCc
Q 038550 209 IDLANKIFDCLP--VKDSASWNTLILGYGMLGEVDTAINLFEAMREDG---------VGY---DPVSYIAILTACSHGGL 274 (423)
Q Consensus 209 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---------~~p---~~~~~~~ll~~~~~~~~ 274 (423)
.+.|..+|++.. +.+...|.. |+...+.++. ++.+.+.- ..+ ....|...+..+.+.++
T Consensus 229 ~~~ar~i~erAi~~P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~ 301 (493)
T 2uy1_A 229 KEKAKKVVERGIEMSDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRG 301 (493)
T ss_dssp HHHHHHHHHHHHHHCCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCC
Confidence 999999987543 222222222 2221111221 22222210 001 12456666666667788
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHH
Q 038550 275 VEKGKKYFDEMQADSVKPTEMHYACMVDLLGR-AGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEH 351 (423)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 351 (423)
.+.|..+|+++ ... ..+...|......-.. .++++.|..+|+.. ..-| ++..+...+......|+.+.|..+|++
T Consensus 302 ~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er 379 (493)
T 2uy1_A 302 LELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKR 379 (493)
T ss_dssp HHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999 321 2334444332222222 33699999999876 2123 355677788888889999999999999
Q ss_pred HHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 352 LFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 352 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
+ +.....|...+..-...|+.+.+..+++++.+
T Consensus 380 ~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 380 L----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp S----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7 34567788888777888999999998888875
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.4e-09 Score=85.41 Aligned_cols=181 Identities=10% Similarity=-0.011 Sum_probs=121.9
Q ss_pred hHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCC
Q 038550 160 SFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGE 239 (423)
Q Consensus 160 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 239 (423)
.+......+...|++++|...|+...+..+.. ...+.. ...... ..........+..++.+.|+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~-----~~~~~~----------~~~~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR-TEMYYW-----TNVDKN----------SEISSKLATELALAYKKNRN 69 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH-HHHHHH-----HHSCTT----------SHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHH-----hhhcch----------hhhhHHHHHHHHHHHHHCCC
Confidence 33444555667778888888887777654321 111110 000000 00012233447888899999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC--hHHHHHHH
Q 038550 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL--MEDAVKLI 317 (423)
Q Consensus 240 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~ 317 (423)
+++|+..|++..+... -+...+..+..++...|++++|...|+++.+.. +.+...+..+..+|...|+ .+.+...+
T Consensus 70 ~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~ 147 (208)
T 3urz_A 70 YDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDY 147 (208)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999988643 267889999999999999999999999999874 4567788888888766553 45566667
Q ss_pred hhCCCCCCH--hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 038550 318 KNLPVEPDA--NIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359 (423)
Q Consensus 318 ~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 359 (423)
+... .|++ ..+..+..++...|++++|+..|+++.+..|.+
T Consensus 148 ~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 148 KKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp C----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 6663 3433 344445566777899999999999999999974
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=5.4e-09 Score=98.91 Aligned_cols=147 Identities=9% Similarity=-0.061 Sum_probs=96.9
Q ss_pred HhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHH
Q 038550 171 LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLF 247 (423)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~ 247 (423)
.|++++|...++++.+... .+...+..+...+.+.|++++|...|++.. +.+...+..+...|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4677888888887776543 245666777788888888888888887654 335677788888888888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---CChHHHHHHHhhC
Q 038550 248 EAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA---GLMEDAVKLIKNL 320 (423)
Q Consensus 248 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~ 320 (423)
++..+... .+...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.+++.
T Consensus 81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 88777632 256777888888888888888888888887763 34566777778888888 8888888888776
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.02 E-value=7.4e-08 Score=82.72 Aligned_cols=161 Identities=6% Similarity=-0.061 Sum_probs=121.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHhccCcHHHHHHHHHHHHHcCCC-CC----hhhHH
Q 038550 229 TLILGYGMLGEVDTAINLFEAMREDGV-GYDPV----SYIAILTACSHGGLVEKGKKYFDEMQADSVK-PT----EMHYA 298 (423)
Q Consensus 229 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~ 298 (423)
..+..+...|++++|..++++..+... .|+.. .+..+...+...+++++|...++++...... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678889999999999999887432 22221 2334666677888999999999999885222 22 23688
Q ss_pred HHHHHHHhcCChHHHHHHHhhC--------CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------cchH
Q 038550 299 CMVDLLGRAGLMEDAVKLIKNL--------PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH------CGYY 363 (423)
Q Consensus 299 ~l~~~~~~~~~~~~a~~~~~~~--------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~ 363 (423)
.+...|...|++++|+..|+++ +..+ ...++..+...|...|++++|...++++.+..+.. ..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8889999999999999988776 1112 23377888899999999999999999998865322 5678
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHhc
Q 038550 364 ILLSNMYAEAGK-WDEASKVRELMKSR 389 (423)
Q Consensus 364 ~~l~~~~~~~g~-~~~A~~~~~~m~~~ 389 (423)
..++.+|.+.|+ +++|.+.+++....
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 899999999995 69999999988764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-08 Score=98.40 Aligned_cols=169 Identities=11% Similarity=0.023 Sum_probs=118.6
Q ss_pred HhHhhHHhhhHHHHHHH--------HhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhcc
Q 038550 169 ANLAAIKQGKEIHGVTI--------RKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGML 237 (423)
Q Consensus 169 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 237 (423)
...|++++|.+.++++. +.. +.+...+..+..++.+.|++++|...|++.. +.+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 55677777777777776 322 2344556667777777788888877777665 34667777788888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 038550 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLI 317 (423)
Q Consensus 238 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 317 (423)
|++++|...|++..+.... +...+..+..++.+.|++++ ...|+++.+.. +.+...|..+..++.+.|++++|++.|
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888887775322 55677777788888888888 88888887764 445667778888888888888888888
Q ss_pred hhC-CCCCC-HhHHHHHHHHHHhcCC
Q 038550 318 KNL-PVEPD-ANIWGALLGACRIYGN 341 (423)
Q Consensus 318 ~~~-~~~~~-~~~~~~l~~~~~~~~~ 341 (423)
+++ ...|+ ...+..+..++...++
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 887 56665 4566666666655554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.01 E-value=2.2e-07 Score=85.60 Aligned_cols=337 Identities=10% Similarity=-0.004 Sum_probs=212.7
Q ss_pred CCcchhHHhhcccCC--cChhhHHHHHHHHHhCCC-hHHHHHHHhhchhC-CCC-CCchhHHHHHHHhhc----CCCCcc
Q 038550 6 SRPAEASYLFHNIAE--KNIVSWNAMVANFAQNRL-ELKALQLVREMPIH-NEF-PNSVTLTNVLPACAR----GHFLRP 76 (423)
Q Consensus 6 g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~-~~~-p~~~~~~~l~~~~~~----~~~~~~ 76 (423)
|+++.+..+|++... |++..|...+....+.+. .+....+|+..... |.. .+...|...+..+.. .++++.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 678999999999776 899999999988777663 35566777776653 432 355677777776543 356788
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHH-------------hcCChHHHHHHh----chhc-CCcchHHHHHHHHhcCC-
Q 038550 77 GKEIHARIIRKGLNFDLFLTNALTDMYA-------------KCGCLNLAQNVF----NISF-RDEVSYNILIVGYSQTS- 137 (423)
Q Consensus 77 a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~g~~~~a~~~~----~~~~-~~~~~~~~l~~~~~~~~- 137 (423)
+..+|+..+......-...|......-. ..+.+..|..++ ...+ .+...|...+.--...+
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 9999999987422111223332221110 011222333333 1111 13335655554432221
Q ss_pred -C-----hhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHH
Q 038550 138 -D-----CSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDL 211 (423)
Q Consensus 138 -~-----~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 211 (423)
- .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..+++..... +.+...+. .|....+.++
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~ 260 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEA 260 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTH
T ss_pred cCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhH
Confidence 1 345678899988764 556777877888888899999999999999988 33333322 2222111111
Q ss_pred -HHHHhccCC------------CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCcHHH
Q 038550 212 -ANKIFDCLP------------VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH-GGLVEK 277 (423)
Q Consensus 212 -A~~~~~~~~------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~ 277 (423)
...+.+... ......|...+....+.++.+.|..+|++. .. ...+...|......-.. .++.+.
T Consensus 261 ~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ 338 (493)
T 2uy1_A 261 VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRAT 338 (493)
T ss_dssp HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHH
Confidence 111222110 001245666677777788899999999999 32 12344455432222222 336999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 278 GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 278 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
|..+|+...+.- +-+...+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..++++..+
T Consensus 339 ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 339 PYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999998862 3334556667787788999999999999983 3678899998888889999999999988875
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.00 E-value=5.5e-07 Score=76.87 Aligned_cols=225 Identities=5% Similarity=-0.026 Sum_probs=138.5
Q ss_pred hhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHh--hHHhhhHHHHHHHHhccCcchHHHHHHHHHH----Hhc---CCH
Q 038550 139 CSESLSLFSEMRLLGMKHDVVSFMGAISACANLA--AIKQGKEIHGVTIRKHLHTHLFVANSILDFY----TRS---GRI 209 (423)
Q Consensus 139 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~ 209 (423)
.++|++.+++++... +-+...++.--..+...+ +++++...++.+....+.. ..+|+.-..++ ... +++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~-y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKN-YQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCccc-HHHHHHHHHHHHHHHHhccccCCH
Confidence 346666666666642 223334455555555555 6666666666666554432 22222222222 233 566
Q ss_pred HHHHHHhccCC---CCChhhHHHHHHHHhccCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc------HHHH
Q 038550 210 DLANKIFDCLP---VKDSASWNTLILGYGMLGEVD--TAINLFEAMREDGVGYDPVSYIAILTACSHGGL------VEKG 278 (423)
Q Consensus 210 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~------~~~a 278 (423)
++++.+++.+. +.+..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.-...+...+. ++++
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence 67776666654 346666766666666677777 888888888876544 66777766666666665 7778
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH-HHHHHhhC-CC----CCCHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 279 KKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED-AVKLIKNL-PV----EPDANIWGALLGACRIYGNVELGAWAAEHL 352 (423)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~-~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 352 (423)
.+.++.++... +-|...|+.+...+.+.|+... +..+..++ .. ..++..+..+...+.+.|+.++|.++++.+
T Consensus 206 l~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 88887777764 4567777777777777776443 44455554 21 235666777777777777777777777777
Q ss_pred Hh-cCCCCcchHHHHH
Q 038550 353 FM-LKPQHCGYYILLS 367 (423)
Q Consensus 353 ~~-~~p~~~~~~~~l~ 367 (423)
.+ .+|.....|...+
T Consensus 285 ~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 285 KSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHTTCGGGHHHHHHHH
T ss_pred HhccChHHHHHHHHHH
Confidence 75 5777666655443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-08 Score=87.62 Aligned_cols=217 Identities=9% Similarity=-0.017 Sum_probs=144.0
Q ss_pred CCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHh-HhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHH
Q 038550 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN-LAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANK 214 (423)
Q Consensus 136 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 214 (423)
.|++++|.+++++..+.. +.. +.+ .++++.|...|.. ....|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~---------------a~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAK---------------AAVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHH---------------HHHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHH---------------HHHHHHHcCCHHHHHH
Confidence 466777888777766531 110 011 2445555554443 3445666777777777
Q ss_pred HhccCCC-----CC----hhhHHHHHHHHhccCCHHHHHHHHHHHHHcC--C-CCC--HHHHHHHHHHHhccCcHHHHHH
Q 038550 215 IFDCLPV-----KD----SASWNTLILGYGMLGEVDTAINLFEAMREDG--V-GYD--PVSYIAILTACSHGGLVEKGKK 280 (423)
Q Consensus 215 ~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~-~p~--~~~~~~ll~~~~~~~~~~~a~~ 280 (423)
.|.+... .+ ..+|+.+...|...|++++|+..+++..+.- . .+. ..++..+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 6664431 11 3467788888888999999999988865431 1 111 3567788888888 99999999
Q ss_pred HHHHHHHcCCCC-----ChhhHHHHHHHHHhcCChHHHHHHHhhC-CC---CCC----HhHHHHHHHHHHhcCChhHHHH
Q 038550 281 YFDEMQADSVKP-----TEMHYACMVDLLGRAGLMEDAVKLIKNL-PV---EPD----ANIWGALLGACRIYGNVELGAW 347 (423)
Q Consensus 281 ~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~---~~~----~~~~~~l~~~~~~~~~~~~a~~ 347 (423)
.|++..+..... ...++..+...|.+.|++++|+..|++. .+ .++ ...+..+...+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999887651111 1456788889999999999999999876 11 111 2256666677788899999999
Q ss_pred HHHHHHhcCCCCcch-----HHHHHHHHHhcCChhHHHH
Q 038550 348 AAEHLFMLKPQHCGY-----YILLSNMYAEAGKWDEASK 381 (423)
Q Consensus 348 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 381 (423)
.++++. ..|..... ...++.++ ..|+.+.+.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 88865543 33444444 5677766655
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.5e-08 Score=82.18 Aligned_cols=132 Identities=8% Similarity=0.018 Sum_probs=61.9
Q ss_pred HHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCC
Q 038550 129 LIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR 208 (423)
Q Consensus 129 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 208 (423)
+..+|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...|+++++..+. +...+..+..+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhH
Confidence 4444445555555555555554432 223444445555555555555555555555544321 23333444444433322
Q ss_pred --HHHHHHHhccCCCCChh--hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038550 209 --IDLANKIFDCLPVKDSA--SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIA 264 (423)
Q Consensus 209 --~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 264 (423)
.+.+...+.....++.. .+.....++...|++++|...|++..+. .|+......
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~ 195 (208)
T 3urz_A 138 QEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 33344455555444432 2223344455566777777777776653 455544433
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2.5e-09 Score=81.47 Aligned_cols=97 Identities=12% Similarity=-0.030 Sum_probs=77.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038550 294 EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371 (423)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 371 (423)
...+..+...+.+.|++++|+..|+++ ...| +...|..+..++...|++++|+..|+++.+.+|.++.++..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 445666677777888888888888777 4445 57778888888888888888888888888888888888888888888
Q ss_pred hcCChhHHHHHHHHHHhcc
Q 038550 372 EAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~~ 390 (423)
..|++++|+..|++..+..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 8888888888888887754
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.99 E-value=6.7e-09 Score=76.66 Aligned_cols=107 Identities=8% Similarity=-0.042 Sum_probs=69.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHh
Q 038550 261 SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRI 338 (423)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~ 338 (423)
.+......|.+.|++++|...|++.++.. +.+...|..+..+|.+.|++++|+..|++. .+.| +...|..+..++..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 45555666667777777777777666653 345566666666666667766666666665 3333 45566666677777
Q ss_pred cCChhHHHHHHHHHHhcCCCCcchHHHHHH
Q 038550 339 YGNVELGAWAAEHLFMLKPQHCGYYILLSN 368 (423)
Q Consensus 339 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 368 (423)
.|++++|+..|+++.+++|.++.++..+..
T Consensus 94 ~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 777777777777777777777666665544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.97 E-value=9.4e-08 Score=81.62 Aligned_cols=212 Identities=14% Similarity=0.123 Sum_probs=167.6
Q ss_pred HHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcC--CHHHHHHHhccCC---CCChhhHHHHHHHH----hcc---CCHH
Q 038550 174 IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG--RIDLANKIFDCLP---VKDSASWNTLILGY----GML---GEVD 241 (423)
Q Consensus 174 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~---~~~~~~~~~li~~~----~~~---g~~~ 241 (423)
.++|...++.++..++. ....++.--.++...| +++++++.++.+. +.+..+|+.-...+ ... ++++
T Consensus 49 s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 49 SERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 35788888888887653 3556666777778888 9999999999876 34566676655555 444 7899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH--HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC------hHHH
Q 038550 242 TAINLFEAMREDGVGYDPVSYIAILTACSHGGLVE--KGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL------MEDA 313 (423)
Q Consensus 242 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a 313 (423)
+++.+++++.+...+ +..+|+.-...+.+.|.++ ++.+.++++.+.. +-|...|+.-...+.+.+. ++++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 999999999987544 7888888888888888888 9999999999875 4577778777667777776 8889
Q ss_pred HHHHhhC-CCCC-CHhHHHHHHHHHHhcCChh-HHHHHHHHHHhcC---CCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 038550 314 VKLIKNL-PVEP-DANIWGALLGACRIYGNVE-LGAWAAEHLFMLK---PQHCGYYILLSNMYAEAGKWDEASKVRELMK 387 (423)
Q Consensus 314 ~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 387 (423)
++.++++ ...| |...|+.+...+.+.|+.. .+..+.+++.+.+ |.++.++..++.+|.+.|+.++|+++++.+.
T Consensus 206 l~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 206 LNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 8888877 4455 7888988888888888744 4566777777765 7888899999999999999999999999987
Q ss_pred h
Q 038550 388 S 388 (423)
Q Consensus 388 ~ 388 (423)
+
T Consensus 286 ~ 286 (306)
T 3dra_A 286 S 286 (306)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-08 Score=80.45 Aligned_cols=154 Identities=11% Similarity=-0.002 Sum_probs=91.9
Q ss_pred HHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccC
Q 038550 198 SILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTA-CSHGG 273 (423)
Q Consensus 198 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~ 273 (423)
.+...+.+.|++++|...|++.. +.+...+..+...+...|++++|...+++..... |+...+...... +...+
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhc
Confidence 34455666666666666666655 2345566666666667777777777776655432 233322221111 11112
Q ss_pred cHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC---HhHHHHHHHHHHhcCChhHHHHHH
Q 038550 274 LVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD---ANIWGALLGACRIYGNVELGAWAA 349 (423)
Q Consensus 274 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~ 349 (423)
....|...+++..+.. +.+...+..+...+...|++++|...|+++ ...|+ ...+..+...+...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2223566677766653 334666777777777777777777777766 44543 446777777777777777777777
Q ss_pred HHHHh
Q 038550 350 EHLFM 354 (423)
Q Consensus 350 ~~~~~ 354 (423)
++...
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=8.3e-09 Score=88.34 Aligned_cols=135 Identities=9% Similarity=-0.046 Sum_probs=115.3
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCHhHHHHHH-
Q 038550 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDANIWGALL- 333 (423)
Q Consensus 256 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~- 333 (423)
+.+...+..+...+...|++++|...|+++.+.. +-+...+..+...+.+.|++++|...++++ ...|+........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3345667778888999999999999999999874 456778889999999999999999999998 4567665443333
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 334 GACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 334 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
..+...++.+.|+..++++.+..|+++..+..++..|...|++++|+..++++.+...
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence 3467888899999999999999999999999999999999999999999999988654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.8e-08 Score=80.84 Aligned_cols=130 Identities=11% Similarity=-0.077 Sum_probs=106.1
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038550 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLL 304 (423)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (423)
..+..+...+...|++++|...|++.. .|+...+..+..++...|++++|...+++..... +.+...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345666777888999999999988763 5678888899999999999999999999988864 45677888888899
Q ss_pred HhcCChHHHHHHHhhC-CCCC-----------------CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 038550 305 GRAGLMEDAVKLIKNL-PVEP-----------------DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359 (423)
Q Consensus 305 ~~~~~~~~a~~~~~~~-~~~~-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 359 (423)
...|++++|...|++. ...| ....+..+..++...|++++|...++++.+..|.+
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 9999999999988877 2222 22677788888899999999999999999988876
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.92 E-value=5.5e-08 Score=79.97 Aligned_cols=186 Identities=10% Similarity=-0.047 Sum_probs=131.1
Q ss_pred chhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcc--hHHHHHHHHHHHhcCCHHHHHHHhccCC--CC-Ch---hhHH
Q 038550 157 DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTH--LFVANSILDFYTRSGRIDLANKIFDCLP--VK-DS---ASWN 228 (423)
Q Consensus 157 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~---~~~~ 228 (423)
+...+..+...+.+.|++++|...|+.+.+..+... ...+..+..+|.+.|++++|...|+++. .| +. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344566677888999999999999999998754332 3566778899999999999999999875 23 22 2455
Q ss_pred HHHHHHhc------------------cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 038550 229 TLILGYGM------------------LGEVDTAINLFEAMREDGVGYDP-VSYIAILTACSHGGLVEKGKKYFDEMQADS 289 (423)
Q Consensus 229 ~li~~~~~------------------~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 289 (423)
.+..++.. .|++++|...|+++.+.. |+. ......... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHHH---
Confidence 55555543 578999999999999863 432 222211110 00111111
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcch
Q 038550 290 VKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD----ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGY 362 (423)
Q Consensus 290 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 362 (423)
.....+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|+..++.+....|.+...
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 11234567788999999999999987 33443 2467788899999999999999999999988887543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.92 E-value=3e-08 Score=77.00 Aligned_cols=129 Identities=9% Similarity=-0.002 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHH
Q 038550 260 VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACR 337 (423)
Q Consensus 260 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~ 337 (423)
..+..+...+...|++++|...+++..+.. +.+..++..+..++...|++++|...+++. ...| +...+..+...+.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345666667777788888888888777753 345677777778888888888888888776 3334 5677888888999
Q ss_pred hcCChhHHHHHHHHHHhcCCCCcchHHHHHHH--HHhcCChhHHHHHHHHHHhc
Q 038550 338 IYGNVELGAWAAEHLFMLKPQHCGYYILLSNM--YAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 338 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~~ 389 (423)
..|++++|...++++.+..|.+...+..+..+ +...|++++|+..+++..+.
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 99999999999999999999988887554444 78889999999999887653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.1e-08 Score=79.30 Aligned_cols=174 Identities=10% Similarity=0.024 Sum_probs=133.2
Q ss_pred chhHHhhcccCC-cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCC----CCccHHHHHHH
Q 038550 9 AEASYLFHNIAE-KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGH----FLRPGKEIHAR 83 (423)
Q Consensus 9 ~~A~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~ 83 (423)
.+|++.|+...+ .++.++..+...|...+++++|++.|++..+.| +...+..+...+.. + ++++|...|++
T Consensus 3 ~eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 3 TEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp -CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 356777776554 678889999999999999999999999998876 66778888888877 6 88999999999
Q ss_pred HHHcCCCCchHHHHHHHHHHHh----cCChHHHHHHh-chhc-CC----cchHHHHHHHHhc----CCChhhHHHHHHHH
Q 038550 84 IIRKGLNFDLFLTNALTDMYAK----CGCLNLAQNVF-NISF-RD----EVSYNILIVGYSQ----TSDCSESLSLFSEM 149 (423)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~-~~~~-~~----~~~~~~l~~~~~~----~~~~~~a~~~~~~m 149 (423)
..+.| ++..+..|..+|.. .+++++|..+| .... .+ ..++..|...|.. .+++++|+..|++.
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 98765 56677778888876 78899999999 2222 22 5778888888888 78899999999988
Q ss_pred HhcCCCCchhhHHHHHHHHHhH-h-----hHHhhhHHHHHHHHhccCc
Q 038550 150 RLLGMKHDVVSFMGAISACANL-A-----AIKQGKEIHGVTIRKHLHT 191 (423)
Q Consensus 150 ~~~~~~~~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~~~~ 191 (423)
.+. ..+...+..+...|... | +.++|...++...+.|...
T Consensus 156 ~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 156 SSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 875 23444666666666543 3 7888888888888877533
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3e-09 Score=81.07 Aligned_cols=96 Identities=14% Similarity=0.086 Sum_probs=58.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038550 294 EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371 (423)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 371 (423)
...+..+...+...|++++|...|++. ...| +...|..+..++...|++++|+..++++.+.+|.++.++..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 334444555556666666666666555 2233 45555666666666666666666666666666666666666666666
Q ss_pred hcCChhHHHHHHHHHHhc
Q 038550 372 EAGKWDEASKVRELMKSR 389 (423)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~ 389 (423)
..|++++|+..|++..+.
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 666666666666666554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.90 E-value=5.5e-09 Score=89.14 Aligned_cols=191 Identities=6% Similarity=-0.086 Sum_probs=116.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 038550 195 VANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSH 271 (423)
Q Consensus 195 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 271 (423)
.+..+...+.+.|++++|...|++.. +.+...|..+..+|.+.|++++|...+++..+... -+...+..+..++..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 34445555666666666666665443 23566677777777788888888888888776532 256677778888888
Q ss_pred cCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHH
Q 038550 272 GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEH 351 (423)
Q Consensus 272 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 351 (423)
.|++++|...|++..+... -+...+...+....+......... ........+......+. .+ ..|+.++|++.+++
T Consensus 85 ~g~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~-~l-~~~~~~~A~~~~~~ 160 (281)
T 2c2l_A 85 MESYDEAIANLQRAYSLAK-EQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLT-RL-IAAERERELEECQR 160 (281)
T ss_dssp TTCHHHHHHHHHHHHHHHH-HTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHH-HH-HHHHHHHHHTTTSG
T ss_pred cCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHH-HH-HHHHHHHHHHHHHh
Confidence 8888888888888776521 111111111111111111111111 12222233433433332 22 36889999999999
Q ss_pred HHhcCCCCcchHHHHHHHHHhc-CChhHHHHHHHHHHhcc
Q 038550 352 LFMLKPQHCGYYILLSNMYAEA-GKWDEASKVRELMKSRE 390 (423)
Q Consensus 352 ~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~ 390 (423)
+.+.+|.+......+...+.+. +++++|.++|.+..+..
T Consensus 161 al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 161 NHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp GGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred hhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9999998877777776666665 77889999999887643
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.90 E-value=1e-07 Score=77.47 Aligned_cols=129 Identities=9% Similarity=-0.049 Sum_probs=110.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 038550 196 ANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLV 275 (423)
Q Consensus 196 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 275 (423)
+..+...+...|++++|...|++...++...|..+...+...|++++|...+++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34567778899999999999999988888999999999999999999999999998864 33678899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCC----------------hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCH
Q 038550 276 EKGKKYFDEMQADSVKPT----------------EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDA 326 (423)
Q Consensus 276 ~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~ 326 (423)
++|...|++..+.. +.+ ...+..+..+|...|++++|...|++. ...|+.
T Consensus 88 ~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 88 DLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999998863 222 267888899999999999999999987 566653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-08 Score=74.85 Aligned_cols=97 Identities=10% Similarity=0.067 Sum_probs=88.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038550 294 EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371 (423)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 371 (423)
...+......|.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++.+|.++.+|..++.+|.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 345677888999999999999999987 4455 68899999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhcc
Q 038550 372 EAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~~ 390 (423)
..|++++|++.|++..+..
T Consensus 93 ~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHC
Confidence 9999999999999998753
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.86 E-value=7.1e-08 Score=70.63 Aligned_cols=115 Identities=13% Similarity=0.166 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCC-CCHhHHHHHHHHH
Q 038550 259 PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVE-PDANIWGALLGAC 336 (423)
Q Consensus 259 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~ 336 (423)
...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++++ ... .+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 3456666666777777777777777776653 344566666777777777777777777665 222 3566777777888
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 038550 337 RIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAG 374 (423)
Q Consensus 337 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 374 (423)
...|++++|...++++.+..|.++..+..++..+...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888888888888888888888887777777665543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.85 E-value=3e-08 Score=86.91 Aligned_cols=128 Identities=9% Similarity=-0.071 Sum_probs=96.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC--------------ChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-
Q 038550 261 SYIAILTACSHGGLVEKGKKYFDEMQADSVKP--------------TEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP- 324 (423)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~- 324 (423)
.+..+...+.+.|++++|...|++..+..... ....|..+..+|.+.|++++|+..+++. .+.|
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 44444455555555555555555555432111 0367778888888888888888888877 3444
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 038550 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEA-SKVRELMKS 388 (423)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 388 (423)
+...+..+..+|...|++++|+..|+++.+..|.+..++..++.++.+.|++++| ..++++|..
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888999999999999999999999999999999999999999999999998 456666643
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.84 E-value=8.9e-08 Score=82.22 Aligned_cols=163 Identities=5% Similarity=-0.059 Sum_probs=116.5
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHHHHcCC---CCC--hh
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDP-----VSYIAILTACSHGGLVEKGKKYFDEMQADSV---KPT--EM 295 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~ 295 (423)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445566777888888888888877765322111 2233455566778899999999888875421 111 34
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhC----CCCCC-----HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------Cc
Q 038550 296 HYACMVDLLGRAGLMEDAVKLIKNL----PVEPD-----ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ------HC 360 (423)
Q Consensus 296 ~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~ 360 (423)
+++.+...|...|++++|...|++. ...|+ ..++..+...|...|++++|+..++++.+..+. ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888889999999998888765 11222 257888888999999999999999998775421 14
Q ss_pred chHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 038550 361 GYYILLSNMYAEAGKWDEA-SKVRELMKS 388 (423)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 388 (423)
.++..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5678889999999999999 777777654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=6.4e-08 Score=71.53 Aligned_cols=117 Identities=9% Similarity=0.003 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHH
Q 038550 259 PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGAC 336 (423)
Q Consensus 259 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~ 336 (423)
...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++. ...| +...+..+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3456666666777777777777777777653 345666777777777778888887777766 2233 466777888888
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 038550 337 RIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKW 376 (423)
Q Consensus 337 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 376 (423)
...|++++|...++++.+..|.++..+..++.++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 8899999999999999999998888888888888887765
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.83 E-value=2e-08 Score=79.19 Aligned_cols=128 Identities=5% Similarity=0.003 Sum_probs=82.1
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCCh--
Q 038550 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL-LGRAGLM-- 310 (423)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-- 310 (423)
+...|++++|...+++..+.. +.+...+..+..+|...|++++|...|+++.... +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 345677777777777766653 2356677777777777777777777777777653 3355566666666 5667776
Q ss_pred HHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchH
Q 038550 311 EDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYY 363 (423)
Q Consensus 311 ~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 363 (423)
++|...++++ ...| +...+..+...+...|++++|...++++.+..|.++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 7777777665 3334 455666666777777777777777777777777665443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=5.9e-08 Score=72.08 Aligned_cols=115 Identities=10% Similarity=-0.056 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHH
Q 038550 259 PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGAC 336 (423)
Q Consensus 259 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~ 336 (423)
...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++. ...| +...+..+...+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3445555555555666666666665555432 224455555555555566666666655554 2222 455666666777
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 038550 337 RIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAG 374 (423)
Q Consensus 337 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 374 (423)
...|++++|...++++.+..|.+...+..++.++...|
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 77777777777777777777777777777766666554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-08 Score=77.36 Aligned_cols=107 Identities=7% Similarity=-0.061 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHH
Q 038550 258 DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGA 335 (423)
Q Consensus 258 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~ 335 (423)
+...+..+...+...|++++|...|+.+.... +.+...|..+..+|...|++++|+..|++. .+.| ++..+..+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 34466667778888899999999998888764 456777888888888999999999988887 4445 56778888889
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCcchHHH
Q 038550 336 CRIYGNVELGAWAAEHLFMLKPQHCGYYIL 365 (423)
Q Consensus 336 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 365 (423)
+...|++++|+..|+++.+..|.++.....
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 999999999999999999999887766443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.76 E-value=6e-08 Score=73.25 Aligned_cols=91 Identities=15% Similarity=0.049 Sum_probs=47.8
Q ss_pred HHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 038550 299 CMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKW 376 (423)
Q Consensus 299 ~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 376 (423)
.+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++.+.+|.++..+..++.+|...|++
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDL 102 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 3444444555555555555544 2222 3444555555555555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHHhc
Q 038550 377 DEASKVRELMKSR 389 (423)
Q Consensus 377 ~~A~~~~~~m~~~ 389 (423)
++|+..+++..+.
T Consensus 103 ~~A~~~~~~al~~ 115 (142)
T 2xcb_A 103 DGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-06 Score=75.09 Aligned_cols=157 Identities=9% Similarity=-0.065 Sum_probs=118.1
Q ss_pred HHHHHHhcCCHHHHHHHhccCCCC---Ch------hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 038550 199 ILDFYTRSGRIDLANKIFDCLPVK---DS------ASWNTLILGYGMLGEVDTAINLFEAMREDGVG-YD----PVSYIA 264 (423)
Q Consensus 199 l~~~~~~~~~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~ 264 (423)
.+..+...|++++|..+++..... +. ..+..+...+...|++++|+..+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 466788889999999998875421 11 13345667777888999999999999874322 22 236889
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHc--CC---CC-ChhhHHHHHHHHHhcCChHHHHHHHhhC-------CCCCC-HhHHH
Q 038550 265 ILTACSHGGLVEKGKKYFDEMQAD--SV---KP-TEMHYACMVDLLGRAGLMEDAVKLIKNL-------PVEPD-ANIWG 330 (423)
Q Consensus 265 ll~~~~~~~~~~~a~~~~~~~~~~--~~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~-~~~~~ 330 (423)
+..+|...|++++|...++++.+. .. .+ ...++..+...|.+.|++++|...+++. +..+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999999998853 11 11 2346788889999999999999998876 22222 56888
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHhc
Q 038550 331 ALLGACRIYGN-VELGAWAAEHLFML 355 (423)
Q Consensus 331 ~l~~~~~~~~~-~~~a~~~~~~~~~~ 355 (423)
.+..++...|+ +++|...++++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88999999995 69999999998763
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.76 E-value=6.4e-08 Score=83.74 Aligned_cols=196 Identities=11% Similarity=0.007 Sum_probs=148.0
Q ss_pred hHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHH
Q 038550 170 NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249 (423)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 249 (423)
..|++++|.+++++..+.... . .+...++++.|...|.. ....|...|++++|...+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 468889999999888764331 1 01115788888777654 46678889999999999998
Q ss_pred HHHcC----CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC--C-CC--ChhhHHHHHHHHHhcCChHHHHHHHhh
Q 038550 250 MREDG----VGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQADS--V-KP--TEMHYACMVDLLGRAGLMEDAVKLIKN 319 (423)
Q Consensus 250 m~~~~----~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~ 319 (423)
..+.. -.+ -..+|+.+..+|...|++++|...|++..+.- . .+ ...++..+...|.. |++++|+..|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 76531 111 13478888899999999999999999887641 1 12 14567788888888 999999999987
Q ss_pred C-CCCC-------CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc------chHHHHHHHHHhcCChhHHHHHHHH
Q 038550 320 L-PVEP-------DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC------GYYILLSNMYAEAGKWDEASKVREL 385 (423)
Q Consensus 320 ~-~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 385 (423)
. .+.| ...++..+...+...|++++|+..++++.+..|.+. ..+..++.++...|++++|+..+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 1111 145788889999999999999999999998765443 2566677788888999999999999
Q ss_pred HH
Q 038550 386 MK 387 (423)
Q Consensus 386 m~ 387 (423)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-07 Score=72.21 Aligned_cols=101 Identities=7% Similarity=-0.130 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHH
Q 038550 259 PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGAC 336 (423)
Q Consensus 259 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~ 336 (423)
...+..+...+.+.|++++|...|+++.... +.+...|..+..+|...|++++|+..|++. .+.| ++..|..+..+|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 4467778888999999999999999999874 557888899999999999999999999988 4555 567888899999
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCc
Q 038550 337 RIYGNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 337 ~~~~~~~~a~~~~~~~~~~~p~~~ 360 (423)
...|++++|+..|+++.+..|+++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999998764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.74 E-value=8.4e-08 Score=75.49 Aligned_cols=122 Identities=7% Similarity=0.039 Sum_probs=98.4
Q ss_pred HhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHH-HHhcCCh--h
Q 038550 269 CSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGA-CRIYGNV--E 343 (423)
Q Consensus 269 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~-~~~~~~~--~ 343 (423)
+...|++++|...+++..... +.+...+..+...|...|++++|...|++. ...| +...+..+... +...|++ +
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 456788888999998888764 456788888899999999999999999887 3334 66777778888 7788998 9
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 344 LGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 344 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
+|...++++.+..|.++.++..++.+|...|++++|...+++..+...
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999999887653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.74 E-value=6.5e-08 Score=71.31 Aligned_cols=93 Identities=12% Similarity=0.031 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 038550 297 YACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAG 374 (423)
Q Consensus 297 ~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 374 (423)
+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++.+.+|.++..+..++.++...|
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 86 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence 344444455555555555555544 2222 34555555556666666666666666666666666666666666666666
Q ss_pred ChhHHHHHHHHHHhc
Q 038550 375 KWDEASKVRELMKSR 389 (423)
Q Consensus 375 ~~~~A~~~~~~m~~~ 389 (423)
++++|+..+++..+.
T Consensus 87 ~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 87 EYASALETLDAARTK 101 (126)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 666666666655543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=9.3e-09 Score=82.77 Aligned_cols=96 Identities=8% Similarity=-0.055 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038550 295 MHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAE 372 (423)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 372 (423)
..+..+..+|...|++++|+..+++. ...| +...+..+..++...|++++|...++++.+..|.++.++..+..++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56667777888888888888888776 3334 667888888999999999999999999999999999999999999988
Q ss_pred cCChhHHH-HHHHHHHhcc
Q 038550 373 AGKWDEAS-KVRELMKSRE 390 (423)
Q Consensus 373 ~g~~~~A~-~~~~~m~~~~ 390 (423)
.++.+++. ..+..|...+
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 88888877 5666666554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-07 Score=68.07 Aligned_cols=99 Identities=14% Similarity=0.065 Sum_probs=77.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CcchHHHHHH
Q 038550 293 TEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ--HCGYYILLSN 368 (423)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 368 (423)
+...+..+...+...|++++|...|++. ...| +...+..+...+...|++++|...++++.+..|. +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3455666677777777777777777766 2233 5667777888888888888888888888888888 8888888888
Q ss_pred HHHhc-CChhHHHHHHHHHHhccc
Q 038550 369 MYAEA-GKWDEASKVRELMKSREA 391 (423)
Q Consensus 369 ~~~~~-g~~~~A~~~~~~m~~~~~ 391 (423)
++... |++++|++.+++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 88888 999999998888877554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.3e-07 Score=74.58 Aligned_cols=153 Identities=9% Similarity=0.003 Sum_probs=85.2
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhcCCh
Q 038550 236 MLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD----SVK-PTEMHYACMVDLLGRAGLM 310 (423)
Q Consensus 236 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~ 310 (423)
..|++++|.+.++.+... ......++..+...+...|++++|...+++.... +.. ....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 455666666644333321 1123445555666666666666666666665542 111 1234455556666666666
Q ss_pred HHHHHHHhhC-------CCCC--CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCc----chHHHHHHHHHhcCC
Q 038550 311 EDAVKLIKNL-------PVEP--DANIWGALLGACRIYGNVELGAWAAEHLFMLKP--QHC----GYYILLSNMYAEAGK 375 (423)
Q Consensus 311 ~~a~~~~~~~-------~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~~----~~~~~l~~~~~~~g~ 375 (423)
++|...+++. +..| ....+..+...+...|++++|...++++.+..+ .++ .++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666554 1111 123455666677777777777777777765421 111 234567777778888
Q ss_pred hhHHHHHHHHHHhc
Q 038550 376 WDEASKVRELMKSR 389 (423)
Q Consensus 376 ~~~A~~~~~~m~~~ 389 (423)
+++|.+.+++..+.
T Consensus 163 ~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 163 LLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777776653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.72 E-value=6.1e-07 Score=74.89 Aligned_cols=150 Identities=12% Similarity=0.070 Sum_probs=78.1
Q ss_pred cCCChhhHHHHHHHHHhcCCCCchhhHHHH-------HHHHHhHhhHHhhhHHHHHHHHhccC-----cc----------
Q 038550 135 QTSDCSESLSLFSEMRLLGMKHDVVSFMGA-------ISACANLAAIKQGKEIHGVTIRKHLH-----TH---------- 192 (423)
Q Consensus 135 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~-----~~---------- 192 (423)
..++...|.+.|.+..... +-....|..+ ...+.+.++..++...+.......+. .+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5788888888888888754 3455677766 56677777777776666655441110 00
Q ss_pred -----hHHHHHHHHHHHhcCCHHHHHHHhccCCC--CChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--HHHHH
Q 038550 193 -----LFVANSILDFYTRSGRIDLANKIFDCLPV--KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYD--PVSYI 263 (423)
Q Consensus 193 -----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~ 263 (423)
....-.+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .|. ...+.
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~ 175 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGV 175 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHH
Confidence 11222344556666666666666666552 211133333334455555555555554332210 000 12344
Q ss_pred HHHHHHhccCcHHHHHHHHHHHH
Q 038550 264 AILTACSHGGLVEKGKKYFDEMQ 286 (423)
Q Consensus 264 ~ll~~~~~~~~~~~a~~~~~~~~ 286 (423)
.+..++...|++++|+..|++..
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~ 198 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEAN 198 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHh
Confidence 44444555555555555555444
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.6e-05 Score=68.64 Aligned_cols=173 Identities=9% Similarity=0.016 Sum_probs=110.9
Q ss_pred hcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHh-hHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhc-C-CHH
Q 038550 134 SQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA-AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRS-G-RID 210 (423)
Q Consensus 134 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~ 210 (423)
.+.+..++|++++++++... +-+...++.--..+...+ .++++...++.+....++ +..+|+.-..++.+. + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChH
Confidence 34444567777777777643 233444555555555566 477777777777765543 344444444444444 5 677
Q ss_pred HHHHHhccCCC---CChhhHHHHHHHHhccCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-----
Q 038550 211 LANKIFDCLPV---KDSASWNTLILGYGMLGEVD--------TAINLFEAMREDGVGYDPVSYIAILTACSHGGL----- 274 (423)
Q Consensus 211 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~----- 274 (423)
+++++++.+.. .|..+|+...-.+.+.|.++ ++++.++++.+..+. |...|+.....+.+.++
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccch
Confidence 77777777663 35556665555554445555 888888888887544 77788887777777765
Q ss_pred --HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 038550 275 --VEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310 (423)
Q Consensus 275 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 310 (423)
++++.+.+++++... +-|...|+.+-..+.+.|+.
T Consensus 222 ~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCC
Confidence 678888888888764 55677777766666666653
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=7e-08 Score=70.57 Aligned_cols=95 Identities=14% Similarity=0.024 Sum_probs=81.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 038550 296 HYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEA 373 (423)
Q Consensus 296 ~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 373 (423)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++.+.+|.++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4555667788899999999999887 4455 6778888888999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhcc
Q 038550 374 GKWDEASKVRELMKSRE 390 (423)
Q Consensus 374 g~~~~A~~~~~~m~~~~ 390 (423)
|++++|+..+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999987654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.9e-07 Score=68.72 Aligned_cols=110 Identities=8% Similarity=-0.112 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHH
Q 038550 260 VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACR 337 (423)
Q Consensus 260 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~ 337 (423)
..+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..+++. .+.| +...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 445566666777777777777777777653 345667777777777777777777777766 3344 4667777788888
Q ss_pred hcCChhHHHHHHHHHHhcC------CCCcchHHHHHHHH
Q 038550 338 IYGNVELGAWAAEHLFMLK------PQHCGYYILLSNMY 370 (423)
Q Consensus 338 ~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 370 (423)
..|++++|+..++++.+.. |.+..+...+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 8888888888888888887 77666666665443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.1e-07 Score=71.76 Aligned_cols=106 Identities=10% Similarity=-0.035 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHH
Q 038550 260 VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACR 337 (423)
Q Consensus 260 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~ 337 (423)
..+..+...+...|++++|...|+++.... +.+...|..+..+|...|++++|+..|++. ...| ++..+..+..++.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 345555666777788888888888877764 446667777777888888888888888776 3344 5566777788888
Q ss_pred hcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 038550 338 IYGNVELGAWAAEHLFMLKPQHCGYYILL 366 (423)
Q Consensus 338 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 366 (423)
..|++++|...++++.+..|.++......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 88899999999999888888777665543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.68 E-value=6.5e-07 Score=69.35 Aligned_cols=109 Identities=11% Similarity=-0.032 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHH
Q 038550 258 DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGA 335 (423)
Q Consensus 258 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~ 335 (423)
+...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|+..|++. .+.| +...|..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34566777777888888888888888888764 446777888888888888888888888877 4445 57788888899
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 038550 336 CRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367 (423)
Q Consensus 336 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 367 (423)
+...|++++|+..|+++.+..|.+...+....
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999999999999999999988665544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.67 E-value=7.3e-08 Score=71.18 Aligned_cols=92 Identities=8% Similarity=-0.069 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc-------hHHHHH
Q 038550 297 YACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG-------YYILLS 367 (423)
Q Consensus 297 ~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 367 (423)
+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..+++++++.|.+.. +|..++
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 334444555555555555555544 2233 3445555555555666666666666666555544332 344455
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 038550 368 NMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~m~~ 388 (423)
.++...|++++|++.|++..+
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 555666666666666665544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.9e-07 Score=68.22 Aligned_cols=100 Identities=13% Similarity=0.078 Sum_probs=90.1
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHH
Q 038550 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN 368 (423)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 368 (423)
+.+...+..+...+...|++++|...|++. ...| +...+..+...+...|++++|+..++++.+..|.++.++..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345667888889999999999999999987 5555 77889999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhcc
Q 038550 369 MYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 369 ~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
++...|++++|+..+++..+..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999988754
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.3e-07 Score=73.34 Aligned_cols=98 Identities=14% Similarity=0.058 Sum_probs=89.4
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 038550 293 TEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMY 370 (423)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 370 (423)
+...+..+...+...|++++|+..|++. ...| +...|..+..+|...|++++|+..++++.+.+|.++.++..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4567788889999999999999999987 4455 7788999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhcc
Q 038550 371 AEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 371 ~~~g~~~~A~~~~~~m~~~~ 390 (423)
...|++++|+..+++..+..
T Consensus 90 ~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC
Confidence 99999999999999998754
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=5.7e-07 Score=64.91 Aligned_cols=107 Identities=10% Similarity=-0.003 Sum_probs=55.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHh
Q 038550 261 SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRI 338 (423)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~ 338 (423)
.+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++. ...| +...+..+...+..
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34444445555555555555555555432 223444444555555555555555555444 2222 34455555555566
Q ss_pred cCChhHHHHHHHHHHhcCCCCcchHHHHHH
Q 038550 339 YGNVELGAWAAEHLFMLKPQHCGYYILLSN 368 (423)
Q Consensus 339 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 368 (423)
.|++++|...++++.+..|.++..+..+..
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 666666666666666666655555544433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.6e-07 Score=75.57 Aligned_cols=151 Identities=15% Similarity=0.080 Sum_probs=90.7
Q ss_pred hcCCHHHHHH---HhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCcHH
Q 038550 205 RSGRIDLANK---IFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED----GVGY-DPVSYIAILTACSHGGLVE 276 (423)
Q Consensus 205 ~~~~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~ 276 (423)
..|++++|.+ .+..-+.....++..+...+...|++++|...+++..+. +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 443322234455666666677777777777777665541 1111 2345666667777778888
Q ss_pred HHHHHHHHHHHc--CCC--C--ChhhHHHHHHHHHhcCChHHHHHHHhhC----CCCCC----HhHHHHHHHHHHhcCCh
Q 038550 277 KGKKYFDEMQAD--SVK--P--TEMHYACMVDLLGRAGLMEDAVKLIKNL----PVEPD----ANIWGALLGACRIYGNV 342 (423)
Q Consensus 277 ~a~~~~~~~~~~--~~~--~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~----~~~~~~l~~~~~~~~~~ 342 (423)
+|...+++..+. ... + ....+..+...+...|++++|...+++. ....+ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 887777776654 111 1 1334666677777778888887777655 11111 23456677778888888
Q ss_pred hHHHHHHHHHHhc
Q 038550 343 ELGAWAAEHLFML 355 (423)
Q Consensus 343 ~~a~~~~~~~~~~ 355 (423)
++|...++++.+.
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887664
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.1e-06 Score=67.99 Aligned_cols=124 Identities=8% Similarity=0.000 Sum_probs=71.9
Q ss_pred HHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcC
Q 038550 61 LTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQT 136 (423)
Q Consensus 61 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~ 136 (423)
+..+...+...|+++.|...++..++.. +.+..++..+..++...|++++|...| ...+.+...|..+..++...
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 3334444444555555555555554443 233445555555555566666665555 22334455667777777778
Q ss_pred CChhhHHHHHHHHHhcCCCCchhhH--HHHHHHHHhHhhHHhhhHHHHHHHH
Q 038550 137 SDCSESLSLFSEMRLLGMKHDVVSF--MGAISACANLAAIKQGKEIHGVTIR 186 (423)
Q Consensus 137 ~~~~~a~~~~~~m~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~ 186 (423)
|++++|...+++..+.. +.+...+ ...+..+...|++++|...+.....
T Consensus 95 ~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 95 GKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888877653 3334444 2333346677888888887776543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.64 E-value=8.2e-07 Score=76.16 Aligned_cols=159 Identities=8% Similarity=-0.072 Sum_probs=114.1
Q ss_pred HHHHHHHHhcCCHHHHHHHhccCC---CCCh------hhHHHHHHHHhccCCHHHHHHHHHHHHHcCC---CCC--HHHH
Q 038550 197 NSILDFYTRSGRIDLANKIFDCLP---VKDS------ASWNTLILGYGMLGEVDTAINLFEAMREDGV---GYD--PVSY 262 (423)
Q Consensus 197 ~~l~~~~~~~~~~~~A~~~~~~~~---~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~p~--~~~~ 262 (423)
...+..+...|++++|.+.+.... +... ..+..+...+...|++++|...+++..+... .+. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 345667778888888888776432 1111 2244456667788899999999998875321 112 4478
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHc-CCCCC-----hhhHHHHHHHHHhcCChHHHHHHHhhC-CC------CC-CHhH
Q 038550 263 IAILTACSHGGLVEKGKKYFDEMQAD-SVKPT-----EMHYACMVDLLGRAGLMEDAVKLIKNL-PV------EP-DANI 328 (423)
Q Consensus 263 ~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~------~~-~~~~ 328 (423)
+.+...|...|++++|...++++.+. ...|+ ..++..+...|...|++++|...+++. .+ .. -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 88888999999999999999988733 11122 257888889999999999999998876 11 11 2567
Q ss_pred HHHHHHHHHhcCChhHH-HHHHHHHHhc
Q 038550 329 WGALLGACRIYGNVELG-AWAAEHLFML 355 (423)
Q Consensus 329 ~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 355 (423)
+..+...|...|++++| ...++++...
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 88888999999999999 7778887653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=3.9e-07 Score=68.07 Aligned_cols=98 Identities=13% Similarity=-0.039 Sum_probs=57.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 038550 293 TEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMY 370 (423)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 370 (423)
+...+..+...+...|++++|...|++. ...| +...+..+...+...|++++|...++++.+..|.++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3444555555555555555555555544 2222 3455555666666666666666666666666666666666666666
Q ss_pred HhcCChhHHHHHHHHHHhcc
Q 038550 371 AEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 371 ~~~g~~~~A~~~~~~m~~~~ 390 (423)
...|++++|+..+++..+..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHC
Confidence 66666666666666665543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.62 E-value=7.9e-08 Score=84.22 Aligned_cols=159 Identities=8% Similarity=-0.059 Sum_probs=102.8
Q ss_pred CCcchhHHhhcccCC---cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHH
Q 038550 6 SRPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHA 82 (423)
Q Consensus 6 g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 82 (423)
+++++|+..|+...+ .+...|..+...+.+.|++++|+..|++..+.. |+...+ ..+.+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~-- 191 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKA-- 191 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHH--
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHH--
Confidence 445566666655443 245677788888888888888888888877643 332110 00000000
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCch
Q 038550 83 RIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDV 158 (423)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 158 (423)
. +....+|..+..+|.+.|++++|+..| +..+.+..+|..+..+|...|++++|+..|++..+.. +.+.
T Consensus 192 --~----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~ 264 (336)
T 1p5q_A 192 --Q----ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNK 264 (336)
T ss_dssp --H----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCH
T ss_pred --H----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCH
Confidence 0 112356666777777777777777777 3345566777888888888888888888888888754 4456
Q ss_pred hhHHHHHHHHHhHhhHHhh-hHHHHHHHH
Q 038550 159 VSFMGAISACANLAAIKQG-KEIHGVTIR 186 (423)
Q Consensus 159 ~~~~~ll~~~~~~~~~~~a-~~~~~~~~~ 186 (423)
..+..+..++...|+.+++ ...+..|..
T Consensus 265 ~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 265 AAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788888888888877 445555544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.62 E-value=1.7e-07 Score=79.78 Aligned_cols=90 Identities=8% Similarity=-0.075 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhH
Q 038550 96 TNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL 171 (423)
Q Consensus 96 ~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 171 (423)
+..+...+...|++++|...| ...+.+...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..++...
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 85 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEM 85 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 333444444444444444444 1222344444455555555555555555555554432 22334444555555555
Q ss_pred hhHHhhhHHHHHHHH
Q 038550 172 AAIKQGKEIHGVTIR 186 (423)
Q Consensus 172 ~~~~~a~~~~~~~~~ 186 (423)
|++++|...++...+
T Consensus 86 g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 86 ESYDEAIANLQRAYS 100 (281)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.61 E-value=5.9e-07 Score=67.97 Aligned_cols=108 Identities=8% Similarity=-0.071 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHH
Q 038550 258 DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT----EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGA 331 (423)
Q Consensus 258 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~ 331 (423)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|...+++. ...| +...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 3445555555566666666666666665553 233 344555555555555555555555544 2222 3444555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 038550 332 LLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367 (423)
Q Consensus 332 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 367 (423)
+..++...|++++|...++++.+..|.+..++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 555555555555555555555555555544444443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.5e-06 Score=72.62 Aligned_cols=133 Identities=14% Similarity=-0.023 Sum_probs=97.9
Q ss_pred HHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCC-C----hhhHHHHHHHHhc
Q 038550 162 MGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVK-D----SASWNTLILGYGM 236 (423)
Q Consensus 162 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~----~~~~~~li~~~~~ 236 (423)
......+...|++++|.+.|+.+...+. +......+...+.+.+++++|+..|+..... + ...+..+..++..
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~p--~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAGS--EHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH
Confidence 3455667778888888888877766543 2224455667888999999999999866543 2 2467778889999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHH
Q 038550 237 LGEVDTAINLFEAMREDGVGYD--PVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA 298 (423)
Q Consensus 237 ~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 298 (423)
.|++++|+..|++.......|. .........++.+.|+.++|..+|+++.... |+...+.
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~ 245 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAA 245 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHH
Confidence 9999999999999885433254 3466677778899999999999999999864 5433333
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=3.5e-05 Score=66.18 Aligned_cols=167 Identities=9% Similarity=0.002 Sum_probs=92.1
Q ss_pred hcCCChh-hHHHHHHHHHhcCCCCch-hhHHHHHHHHHhHhh----------HHhhhHHHHHHHHhccCcchHHHHHHHH
Q 038550 134 SQTSDCS-ESLSLFSEMRLLGMKHDV-VSFMGAISACANLAA----------IKQGKEIHGVTIRKHLHTHLFVANSILD 201 (423)
Q Consensus 134 ~~~~~~~-~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 201 (423)
.+.|.++ +|+++++.+... .|+. ..++.--..+...+. ++++..+++.+....++ +..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 3445544 788888888774 3443 334444333333333 56666677766665442 3444444444
Q ss_pred HHHhcC--CHHHHHHHhccCC---CCChhhHHHHHHHHhccCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc---
Q 038550 202 FYTRSG--RIDLANKIFDCLP---VKDSASWNTLILGYGMLGE-VDTAINLFEAMREDGVGYDPVSYIAILTACSHG--- 272 (423)
Q Consensus 202 ~~~~~~--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--- 272 (423)
++...+ .+++++.+++.+. +.|..+|+.-.-.+...|. ++++++.++++.+..+. |...|+.....+...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 455555 3666666666654 3455666665555556666 46777777777665433 555555554444333
Q ss_pred -----------CcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038550 273 -----------GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305 (423)
Q Consensus 273 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (423)
+.++++.+.+....... |-|...|+.+-..+.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLG 238 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34566666666666553 345555554443333
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=5.6e-07 Score=64.97 Aligned_cols=97 Identities=14% Similarity=0.091 Sum_probs=87.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038550 294 EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371 (423)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 371 (423)
...+..+...+...|++++|...|++. ...| +...+..+...+...|++++|...++++.+..|.++..+..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456777888899999999999999987 3344 77888899999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhcc
Q 038550 372 EAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~~ 390 (423)
..|++++|...+++..+.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHHHHHHHHHcC
Confidence 9999999999999987754
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.60 E-value=6e-07 Score=65.53 Aligned_cols=97 Identities=18% Similarity=0.260 Sum_probs=87.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038550 294 EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371 (423)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 371 (423)
...+..+...+...|++++|.+.++++ ...| +..++..+...+...|++++|...++++.+..|.++..+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567788889999999999999999987 3333 67788999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhcc
Q 038550 372 EAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 372 ~~g~~~~A~~~~~~m~~~~ 390 (423)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999998754
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.56 E-value=5.2e-07 Score=67.38 Aligned_cols=100 Identities=6% Similarity=-0.084 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHH
Q 038550 258 DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGA 335 (423)
Q Consensus 258 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~ 335 (423)
+...+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++. ...| +...+..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45666677777777777777777777776653 345666777777777777777777777766 3334 56677777778
Q ss_pred HHhcCChhHHHHHHHHHHhcCCC
Q 038550 336 CRIYGNVELGAWAAEHLFMLKPQ 358 (423)
Q Consensus 336 ~~~~~~~~~a~~~~~~~~~~~p~ 358 (423)
+...|++++|+..++++.+..|.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888877766
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.54 E-value=6e-07 Score=82.18 Aligned_cols=129 Identities=11% Similarity=0.006 Sum_probs=96.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC---------------hhhHHHHHHHHHhcCChHHHHHHHhhC-CCC
Q 038550 260 VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT---------------EMHYACMVDLLGRAGLMEDAVKLIKNL-PVE 323 (423)
Q Consensus 260 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~ 323 (423)
..+..+...+.+.|++++|...|++..+.. +.+ ...|..+..+|.+.|++++|+..++++ .+.
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 345555666666666666666666666542 111 467888888999999999999998887 444
Q ss_pred C-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHH-HHHHHHHhc
Q 038550 324 P-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEAS-KVRELMKSR 389 (423)
Q Consensus 324 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~ 389 (423)
| +...|..+..+|...|++++|+..|+++.++.|.+..++..+..++.+.|+++++. ..+++|..+
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4 67788889999999999999999999999999999999999999999999998876 456666544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=2e-06 Score=64.99 Aligned_cols=97 Identities=10% Similarity=-0.046 Sum_probs=60.7
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 038550 293 TEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD----ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367 (423)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 367 (423)
+...+..+...+...|++++|...|++. ...|+ ...+..+...+...|++++|+..++++.+..|.++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4455555666666666666666666655 44454 455555666666666666666666666666666666666666
Q ss_pred HHHHhcCChhHHHHHHHHHHhc
Q 038550 368 NMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
.+|...|++++|...+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 6666666666666666666543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.53 E-value=2.8e-07 Score=84.76 Aligned_cols=119 Identities=9% Similarity=0.007 Sum_probs=93.8
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChh
Q 038550 266 LTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVE 343 (423)
Q Consensus 266 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~ 343 (423)
...+.+.|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|++.+++. .+.| +...+..+..+|...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 344667788888888888888763 445777888888888888888888888877 4455 5678888889999999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHH--HHhcCChhHHHHHHHH
Q 038550 344 LGAWAAEHLFMLKPQHCGYYILLSNM--YAEAGKWDEASKVREL 385 (423)
Q Consensus 344 ~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 385 (423)
+|+..++++.+..|.+...+..+..+ +.+.|++++|++.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999998888877 8888999999999883
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.51 E-value=1e-06 Score=62.91 Aligned_cols=100 Identities=15% Similarity=0.092 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC---CHhHHHHHHHH
Q 038550 260 VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP---DANIWGALLGA 335 (423)
Q Consensus 260 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~---~~~~~~~l~~~ 335 (423)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++. ...| +...+..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 344555556666666666666666666543 334555666666666777777777766665 2233 35667777777
Q ss_pred HHhc-CChhHHHHHHHHHHhcCCCCc
Q 038550 336 CRIY-GNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 336 ~~~~-~~~~~a~~~~~~~~~~~p~~~ 360 (423)
+... |++++|.+.++++....|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7777 888888888888877777654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.51 E-value=5.5e-07 Score=67.88 Aligned_cols=107 Identities=10% Similarity=-0.057 Sum_probs=74.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCC-CHhHHHHHHHHHHhc
Q 038550 261 SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP-DANIWGALLGACRIY 339 (423)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~ 339 (423)
.+......+.+.|++++|...|++.++.. |+...- +.....| +...|..+..++...
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~--------------------~a~~~~~~~a~a~~n~g~al~~L 70 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPE--------------------EAFDHAGFDAFCHAGLAEALAGL 70 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTT--------------------SCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcch--------------------hhhhhccchHHHHHHHHHHHHHC
Confidence 34455555666677777777777666642 221000 0000000 233788888888888
Q ss_pred CChhHHHHHHHHHHhc-------CCCCcchH----HHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 340 GNVELGAWAAEHLFML-------KPQHCGYY----ILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 340 ~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
|++++|+..+++++++ +|++...| ...+.++...|++++|+..|++..+.
T Consensus 71 gr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 71 RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8898888888888888 99998889 99999999999999999999988764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.2e-06 Score=64.56 Aligned_cols=98 Identities=14% Similarity=0.060 Sum_probs=87.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 038550 293 TEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMY 370 (423)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 370 (423)
+...+..+...+...|++++|...|++. ...| +...+..+...+...|++++|...++++.+..|.++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4566778888999999999999999987 3344 6788889999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhcc
Q 038550 371 AEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 371 ~~~g~~~~A~~~~~~m~~~~ 390 (423)
...|++++|...+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999988754
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.50 E-value=7.5e-07 Score=65.70 Aligned_cols=97 Identities=9% Similarity=-0.087 Sum_probs=50.8
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC----HhHHHHHHHHH
Q 038550 265 ILTACSHGGLVEKGKKYFDEMQADSVKPTE---MHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD----ANIWGALLGAC 336 (423)
Q Consensus 265 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~ 336 (423)
+...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...|+++ ...|+ ...+..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3445556666666666666665542 1112 24444555555556666665555554 22222 33445555555
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcch
Q 038550 337 RIYGNVELGAWAAEHLFMLKPQHCGY 362 (423)
Q Consensus 337 ~~~~~~~~a~~~~~~~~~~~p~~~~~ 362 (423)
...|++++|...++++.+..|.++..
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 55556666666665555555555443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=3.6e-07 Score=73.31 Aligned_cols=164 Identities=10% Similarity=-0.042 Sum_probs=88.4
Q ss_pred ccCCcchhHHhhcccCC---cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHH
Q 038550 4 KSSRPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEI 80 (423)
Q Consensus 4 ~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 80 (423)
..|++++|.+.++...+ .....+..+...+...|++++|++.|++..... |+...+... ...-
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~------------~~~~ 81 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ------------ILLD 81 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH------------HHHH
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh------------hHHH
Confidence 34566666666655433 244566677777778888888888887776642 211100000 0000
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCC
Q 038550 81 HARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKH 156 (423)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 156 (423)
... .....++..+..+|...|++++|+..+ ...+.+..++..+..+|...|++++|+..|++..+.. +-
T Consensus 82 ~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~ 154 (198)
T 2fbn_A 82 KKK------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PN 154 (198)
T ss_dssp HHH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TT
T ss_pred HHH------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CC
Confidence 000 001245566666677777777777766 3334566677777778888888888888888877753 33
Q ss_pred chhhHHHHHHHHHhHhhHHhhh-HHHHHHHHhc
Q 038550 157 DVVSFMGAISACANLAAIKQGK-EIHGVTIRKH 188 (423)
Q Consensus 157 ~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~ 188 (423)
+...+..+..++...++.+++. ..+..+...+
T Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 155 NLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5566677777777777777776 5555554443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=9.8e-05 Score=63.79 Aligned_cols=178 Identities=10% Similarity=-0.042 Sum_probs=112.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhhchhCCCCCC-chhHHHHHHHhhcCC-CCccHHHHHHHHHHcCCCCchHHHHHHHHH
Q 038550 25 SWNAMVANFAQNRLELKALQLVREMPIHNEFPN-SVTLTNVLPACARGH-FLRPGKEIHARIIRKGLNFDLFLTNALTDM 102 (423)
Q Consensus 25 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 102 (423)
+++.+.....+.+..++|+++++.++..+ |+ ..+|+.--..+...| .+++++.+++.++... +-+..+|+.-..+
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wl 132 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 34444444555666678999999988764 43 445676666666667 5888899998888775 4566677777666
Q ss_pred HHhc-C-ChHHHHHHh----chhcCCcchHHHHHHHHhcCCChh--------hHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 038550 103 YAKC-G-CLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCS--------ESLSLFSEMRLLGMKHDVVSFMGAISAC 168 (423)
Q Consensus 103 ~~~~-g-~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 168 (423)
+.+. + +++++++++ +..++|..+|+.-...+.+.+.++ ++++.++++.+.. +-|...|+.....+
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 6665 6 777777777 344556666666555555555555 7777777777764 44556666666665
Q ss_pred HhHhh-------HHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcC
Q 038550 169 ANLAA-------IKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG 207 (423)
Q Consensus 169 ~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 207 (423)
.+.+. ++++.+.++.++...+ .+...++-+-..+.+.|
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HhccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcC
Confidence 55543 4566666666665443 23444444444444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.47 E-value=8e-07 Score=65.50 Aligned_cols=106 Identities=7% Similarity=-0.070 Sum_probs=55.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CC----CCC----HhHHHHH
Q 038550 262 YIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PV----EPD----ANIWGAL 332 (423)
Q Consensus 262 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~----~~~----~~~~~~l 332 (423)
+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++. .. .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3444444445555555555555544432 223444444445555555555555555443 11 111 4455666
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHH
Q 038550 333 LGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNM 369 (423)
Q Consensus 333 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 369 (423)
...+...|++++|...++++.+..| ++.....+..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 121 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 6667777777777777777777666 44444444433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=8.1e-07 Score=64.82 Aligned_cols=98 Identities=10% Similarity=0.004 Sum_probs=62.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhc
Q 038550 262 YIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIY 339 (423)
Q Consensus 262 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~ 339 (423)
+..+...+.+.|++++|...+++..+.. +.+...|..+..++...|++++|+..|++. .+.| +...+..+..++...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3444555666777777777777777653 345666666777777777777777777766 3444 455667777777777
Q ss_pred CChhHHHHHHHHHHhcCCCCc
Q 038550 340 GNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 340 ~~~~~a~~~~~~~~~~~p~~~ 360 (423)
|++++|+..++++.+..|.+.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 777778777777777777643
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=3.2e-05 Score=66.44 Aligned_cols=213 Identities=9% Similarity=0.035 Sum_probs=149.1
Q ss_pred HhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCC----------HHHHHHHhccCC---CCChhhHHHHHHHHhccC--C
Q 038550 175 KQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGR----------IDLANKIFDCLP---VKDSASWNTLILGYGMLG--E 239 (423)
Q Consensus 175 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g--~ 239 (423)
++|...++.++..++.. ..+++.--.++...+. +++++.+++.+. +.+..+|+.-...+...| .
T Consensus 47 ~eaL~~t~~~L~~nP~~-ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 47 ESVLELTSQILGANPDF-ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHCchh-HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 46788888887765433 3333333333322222 567777777665 457788888777777777 4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-----------
Q 038550 240 VDTAINLFEAMREDGVGYDPVSYIAILTACSHGGL-VEKGKKYFDEMQADSVKPTEMHYACMVDLLGRA----------- 307 (423)
Q Consensus 240 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------- 307 (423)
+++++.+++.+.+...+ |..+|+.-...+...|. ++++.+.++.+++.. +-|...|+.....+.+.
T Consensus 126 ~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~ 203 (331)
T 3dss_A 126 WARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGR 203 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------C
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccc
Confidence 89999999999987644 77888888777788887 589999999999875 45777777766666554
Q ss_pred ---CChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhc-----------CChhHHHHHHHHHHhcCCCCcchHHHHHHH--
Q 038550 308 ---GLMEDAVKLIKNL-PVEP-DANIWGALLGACRIY-----------GNVELGAWAAEHLFMLKPQHCGYYILLSNM-- 369 (423)
Q Consensus 308 ---~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-- 369 (423)
+.++++++.+.+. ...| |...|+-+-..+... +.++++++.++++.+..|++.-.+..++..
T Consensus 204 ~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~ 283 (331)
T 3dss_A 204 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR 283 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHH
Confidence 4477888888776 4455 677776555444444 457899999999999999884443333322
Q ss_pred -HHhcCChhHHHHHHHHHHhcc
Q 038550 370 -YAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 370 -~~~~g~~~~A~~~~~~m~~~~ 390 (423)
....|..+++...+.++.+.+
T Consensus 284 ~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 284 ALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHCTTTTHHHHHHHHHHHHHHC
T ss_pred hhcccccHHHHHHHHHHHHHhC
Confidence 224677888999999987643
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-06 Score=64.22 Aligned_cols=106 Identities=8% Similarity=-0.064 Sum_probs=52.6
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLG 305 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (423)
++..+...+.+.|++++|+..|++..+... -+...|..+..+|...|++++|+..+++.++... .+...+..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~----- 82 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR-ETRADYKLI----- 82 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCHHHH-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc-ccchhhHHH-----
Confidence 344455555555555555555555554321 1344455555555555555555555555444310 000001101
Q ss_pred hcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 038550 306 RAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358 (423)
Q Consensus 306 ~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 358 (423)
..+|..+..++...|++++|+..|+++++..|+
T Consensus 83 --------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 83 --------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp --------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred --------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 124445556666677777777777777666553
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-06 Score=77.12 Aligned_cols=90 Identities=7% Similarity=-0.062 Sum_probs=77.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 038550 293 TEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMY 370 (423)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 370 (423)
+...|..+..+|.+.|++++|+..+++. .+.| +...+..+..+|...|++++|+..++++.+..|.+..++..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4567888888999999999999999887 5566 5778888999999999999999999999999999999999999988
Q ss_pred HhcCChhHHHHH
Q 038550 371 AEAGKWDEASKV 382 (423)
Q Consensus 371 ~~~g~~~~A~~~ 382 (423)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 888888777643
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.7e-07 Score=66.92 Aligned_cols=82 Identities=13% Similarity=0.144 Sum_probs=45.7
Q ss_pred CChHHHHHHHhhC-CC---CC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHH
Q 038550 308 GLMEDAVKLIKNL-PV---EP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKV 382 (423)
Q Consensus 308 ~~~~~a~~~~~~~-~~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 382 (423)
|++++|+..|++. .. .| +...+..+...+...|++++|+..++++.+..|.++.++..++.++...|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4555555555544 22 13 2344555555666666666666666666666666666666666666666666666666
Q ss_pred HHHHHhc
Q 038550 383 RELMKSR 389 (423)
Q Consensus 383 ~~~m~~~ 389 (423)
+++..+.
T Consensus 84 ~~~al~~ 90 (117)
T 3k9i_A 84 LLKIIAE 90 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6665543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.42 E-value=5.1e-07 Score=79.09 Aligned_cols=148 Identities=8% Similarity=-0.078 Sum_probs=80.1
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038550 224 SASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL 303 (423)
Q Consensus 224 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 303 (423)
...+..+...+.+.|++++|...|++.... .|+.. .+...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 345666677777788888888888887664 23332 1233444444332221 1367778888
Q ss_pred HHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHH-HHhcCChhHHH
Q 038550 304 LGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNM-YAEAGKWDEAS 380 (423)
Q Consensus 304 ~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~ 380 (423)
|.+.|++++|+..+++. .+.| +...|..+..+|...|++++|+..|+++.+..|.++.++..+... ....+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999998877 4445 677888889999999999999999999999999988888888766 34556777888
Q ss_pred HHHHHHHhcc
Q 038550 381 KVRELMKSRE 390 (423)
Q Consensus 381 ~~~~~m~~~~ 390 (423)
.+|++|....
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8888887654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.42 E-value=4.8e-06 Score=61.24 Aligned_cols=92 Identities=20% Similarity=0.129 Sum_probs=59.2
Q ss_pred HHHHHHHhcCChHHHHHHHhhC-CCCCC-H---hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---cchHHHHHHHH
Q 038550 299 CMVDLLGRAGLMEDAVKLIKNL-PVEPD-A---NIWGALLGACRIYGNVELGAWAAEHLFMLKPQH---CGYYILLSNMY 370 (423)
Q Consensus 299 ~l~~~~~~~~~~~~a~~~~~~~-~~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 370 (423)
.+...+...|++++|...|+++ ...|+ . ..+..+..++...|++++|...++++.+..|.+ +.++..++.++
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3455566677777777776665 22232 2 355556666677777777777777777777766 55566677777
Q ss_pred HhcCChhHHHHHHHHHHhcc
Q 038550 371 AEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 371 ~~~g~~~~A~~~~~~m~~~~ 390 (423)
...|++++|...++++.+..
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 77777777777777766543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.2e-06 Score=64.50 Aligned_cols=97 Identities=10% Similarity=0.069 Sum_probs=84.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-------cchHH
Q 038550 294 EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH-------CGYYI 364 (423)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~ 364 (423)
...+..+...+...|++++|...|++. ...| +...+..+...+...|++++|...++++.+..|.+ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 356777888999999999999999987 3334 67888899999999999999999999999988766 77888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 365 LLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 365 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
.++.++...|++++|...+++..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999999999999999998754
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.40 E-value=3e-06 Score=76.98 Aligned_cols=162 Identities=10% Similarity=-0.106 Sum_probs=89.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHc----CCCC-Chhh
Q 038550 227 WNTLILGYGMLGEVDTAINLFEAMREDG-VGYDP----VSYIAILTACSHGGLVEKGKKYFDEMQAD----SVKP-TEMH 296 (423)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 296 (423)
+..+...|...|++++|.+.+..+...- ..++. ...+.+...+...|+.+.|..+++..... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4445556666666666666665544321 01111 12223333344556667776666665542 1111 1345
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhC-------CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCC----cc
Q 038550 297 YACMVDLLGRAGLMEDAVKLIKNL-------PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLK---PQH----CG 361 (423)
Q Consensus 297 ~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~----~~ 361 (423)
+..+...|...|++++|..+++++ ..++ ...++..++..|...|++++|...++++.... +.. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 566667777777777777766654 1122 23456666677777777777777777766543 221 12
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 362 YYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 362 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
.+..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345556666677777777777666654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.40 E-value=1e-06 Score=68.01 Aligned_cols=102 Identities=9% Similarity=-0.073 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHc--------C---------CCCChhhHHHHHHHHHhcCChHHHHHHHhhC-
Q 038550 259 PVSYIAILTACSHGGLVEKGKKYFDEMQAD--------S---------VKPTEMHYACMVDLLGRAGLMEDAVKLIKNL- 320 (423)
Q Consensus 259 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~- 320 (423)
...+......+.+.|++++|...|++.... . -+.+...|..+..+|.+.|++++|+..+++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456677777888888888888888887764 0 0112234455555555555555555555554
Q ss_pred CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 038550 321 PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 321 ~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 360 (423)
.+.| +...|..+..++...|++++|...++++.++.|.++
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 2233 344555555555555555555555555555555554
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.40 E-value=1e-06 Score=68.08 Aligned_cols=99 Identities=11% Similarity=-0.000 Sum_probs=54.5
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHc--------CC--------CC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038550 225 ASWNTLILGYGMLGEVDTAINLFEAMRED--------GV--------GY-DPVSYIAILTACSHGGLVEKGKKYFDEMQA 287 (423)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------~~--------~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 287 (423)
..+......+.+.|++++|+..|.+.... .. .| +...|..+..+|.+.|++++|...+++.++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34555555566666666666666665543 00 01 123455555566666666666666666665
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC
Q 038550 288 DSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP 324 (423)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~ 324 (423)
.. +.+...|..+..+|...|++++|...|++. .+.|
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 43 334555556666666666666666666554 3344
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.39 E-value=9.7e-07 Score=67.80 Aligned_cols=94 Identities=16% Similarity=0.068 Sum_probs=57.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhC-------CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC------CCcc
Q 038550 296 HYACMVDLLGRAGLMEDAVKLIKNL-------PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKP------QHCG 361 (423)
Q Consensus 296 ~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~ 361 (423)
++..+...+...|++++|...+++. +..+ ....+..+...+...|++++|...++++.+..+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444455555555555555555443 1001 133455566677777777777777777765421 1234
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 362 YYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 362 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
++..++..+...|++++|.+.+++..+.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5677888888889999998888887653
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.37 E-value=3.8e-07 Score=66.14 Aligned_cols=92 Identities=14% Similarity=0.056 Sum_probs=60.8
Q ss_pred cCcHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHH
Q 038550 272 GGLVEKGKKYFDEMQADS--VKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAW 347 (423)
Q Consensus 272 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~ 347 (423)
.|++++|...|++..+.+ -+.+...+..+..+|...|++++|+..|++. ...| +...+..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 466667777777766642 1233456666777777777777777777766 3334 46677777778888888888888
Q ss_pred HHHHHHhcCCCCcchH
Q 038550 348 AAEHLFMLKPQHCGYY 363 (423)
Q Consensus 348 ~~~~~~~~~p~~~~~~ 363 (423)
.++++.+..|.++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 8888888877776543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.34 E-value=7.2e-06 Score=74.97 Aligned_cols=123 Identities=11% Similarity=0.017 Sum_probs=98.7
Q ss_pred HHhccCcHHHHHHHHHHHHHc---CCCC----ChhhHHHHHHHHHhcCChHHHHHHHhhC---------CCCCC-HhHHH
Q 038550 268 ACSHGGLVEKGKKYFDEMQAD---SVKP----TEMHYACMVDLLGRAGLMEDAVKLIKNL---------PVEPD-ANIWG 330 (423)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~---------~~~~~-~~~~~ 330 (423)
.+..+|++++|+.++++..+. -+.| ...+++.|..+|...|++++|+.++++. ...|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999887764 1222 2567888999999999999999988775 24454 34788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh-----cCCCCcch---HHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 331 ALLGACRIYGNVELGAWAAEHLFM-----LKPQHCGY---YILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 331 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
.|...|...|++++|+.+++++.+ .+|++|.+ ...+..++...+++++|+.+|.++.+.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999977 46777765 4567788889999999999999998754
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=3.6e-05 Score=72.10 Aligned_cols=167 Identities=8% Similarity=-0.019 Sum_probs=129.3
Q ss_pred HHHHHHhccCC---CCChhhHHHHHHHHhccCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--c
Q 038550 210 DLANKIFDCLP---VKDSASWNTLILGYGMLGE----------VDTAINLFEAMREDGVGYDPVSYIAILTACSHGG--L 274 (423)
Q Consensus 210 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~ 274 (423)
++|.+.++.+. +.+..+|+.--.++...|+ ++++++.++.+.+...+ +..+|+.-..++.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccccc
Confidence 45566665554 2345566665555555555 88999999999887544 7788888888888888 6
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-ChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhc------------
Q 038550 275 VEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG-LMEDAVKLIKNL-PVEP-DANIWGALLGACRIY------------ 339 (423)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~------------ 339 (423)
++++.+.++++.+.. +-+...|+.-..++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 125 ~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~ 203 (567)
T 1dce_A 125 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred HHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccc
Confidence 799999999999875 457778887777777888 889999998888 5556 677787776666553
Q ss_pred --CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhH
Q 038550 340 --GNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDE 378 (423)
Q Consensus 340 --~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 378 (423)
+.++++++.+.++...+|.+..+|.-+...+.+.+++++
T Consensus 204 ~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 204 PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999988888655
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.8e-05 Score=70.57 Aligned_cols=57 Identities=7% Similarity=0.008 Sum_probs=33.1
Q ss_pred HHHHhcCCChhhHHHHHHHHHhcCCCCch----------------hhHHHHHHHHHhHhhHHhhhHHHHHHHH
Q 038550 130 IVGYSQTSDCSESLSLFSEMRLLGMKHDV----------------VSFMGAISACANLAAIKQGKEIHGVTIR 186 (423)
Q Consensus 130 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 186 (423)
...+.+.|++++|++.|.+..+....... ..+..+...|...|++++|.+.+..+..
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45567778888888888888775422111 1244455555555555555555554443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.26 E-value=5e-06 Score=72.76 Aligned_cols=152 Identities=8% Similarity=-0.032 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 038550 193 LFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG 272 (423)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 272 (423)
...+..+...+.+.|++++|...|++....+.... .+...|+..++...+. ...|..+..+|.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 34566778888999999999999987652211111 1233344444433221 13678888889999
Q ss_pred CcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC-HhHHHHHHHH-HHhcCChhHHHHHH
Q 038550 273 GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD-ANIWGALLGA-CRIYGNVELGAWAA 349 (423)
Q Consensus 273 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~~~l~~~-~~~~~~~~~a~~~~ 349 (423)
|++++|...+++.++.. +.+...|..+..+|...|++++|...|++. .+.|+ ...+..+... ....+..+.+...|
T Consensus 244 g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~ 322 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMY 322 (338)
T ss_dssp TCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998864 456788889999999999999999999988 56664 4455555444 34456778888899
Q ss_pred HHHHhcCCCCc
Q 038550 350 EHLFMLKPQHC 360 (423)
Q Consensus 350 ~~~~~~~p~~~ 360 (423)
..+....|.++
T Consensus 323 ~~~l~~~p~~~ 333 (338)
T 2if4_A 323 KGIFKGKDEGG 333 (338)
T ss_dssp -----------
T ss_pred HHhhCCCCCCC
Confidence 99988887654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.23 E-value=2.4e-06 Score=78.21 Aligned_cols=157 Identities=8% Similarity=-0.067 Sum_probs=98.2
Q ss_pred CcchhHHhhcccCC---cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHH
Q 038550 7 RPAEASYLFHNIAE---KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHAR 83 (423)
Q Consensus 7 ~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 83 (423)
++++|+..|+...+ .....|..+...+.+.|++++|+..|++..+.. |+...+ . + .....
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~----------~--~---~~~~~ 311 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL----------S--E---KESKA 311 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC----------C--H---HHHHH
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC----------C--h---HHHHH
Confidence 45556666655443 245577888888888999999999988887642 222110 0 0 00000
Q ss_pred HHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchh
Q 038550 84 IIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV 159 (423)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 159 (423)
.. +.....|..+..+|.+.|++++|+..| +..+.+..+|..+..+|...|++++|+..|++..+.. +-+..
T Consensus 312 ~~----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~ 386 (457)
T 1kt0_A 312 SE----SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKA 386 (457)
T ss_dssp HH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----C
T ss_pred HH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHH
Confidence 00 112356666777777777777777777 3445567778888888888888888888888887753 33455
Q ss_pred hHHHHHHHHHhHhhHHhhhH-HHHHHH
Q 038550 160 SFMGAISACANLAAIKQGKE-IHGVTI 185 (423)
Q Consensus 160 ~~~~ll~~~~~~~~~~~a~~-~~~~~~ 185 (423)
.+..+..++.+.++.+++.+ .+..|.
T Consensus 387 a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 387 ARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777778887777653 444443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.18 E-value=1e-05 Score=61.86 Aligned_cols=131 Identities=15% Similarity=0.048 Sum_probs=81.4
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-CCC----hh
Q 038550 226 SWNTLILGYGMLGEVDTAINLFEAMREDGVG-YD----PVSYIAILTACSHGGLVEKGKKYFDEMQADSV-KPT----EM 295 (423)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~ 295 (423)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555666666666666666665442100 11 13566666677777777777777777665410 011 34
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhC-------CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 038550 296 HYACMVDLLGRAGLMEDAVKLIKNL-------PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLK 356 (423)
Q Consensus 296 ~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 356 (423)
.+..+...+...|++++|.+.+++. +..+ ....+..+...+...|++++|...++++.+..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5566667777778888777777655 1111 23456677788888899999998888877653
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.18 E-value=7.2e-06 Score=59.01 Aligned_cols=64 Identities=9% Similarity=-0.048 Sum_probs=37.1
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
+...+..+...+...|++++|+..++++.+..|.+...+..++.+|...|++++|+..+++..+
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555556666666666666655555555555555566666666666665555544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.16 E-value=1e-06 Score=62.95 Aligned_cols=92 Identities=12% Similarity=-0.003 Sum_probs=65.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------cchHHH
Q 038550 294 EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH------CGYYIL 365 (423)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~ 365 (423)
...+..+...+...|++++|.+.|++. ...| +...+..+..++...|++++|+..++++.+..|.+ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 445566667777777777777777766 3333 56677777888888888888888888888888887 666667
Q ss_pred HHHHHHhcCChhHHHHHHHH
Q 038550 366 LSNMYAEAGKWDEASKVREL 385 (423)
Q Consensus 366 l~~~~~~~g~~~~A~~~~~~ 385 (423)
++.++...|++++|+..+++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHHH
Confidence 77777777777666555443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.14 E-value=1.3e-05 Score=56.04 Aligned_cols=66 Identities=20% Similarity=0.102 Sum_probs=58.4
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
+...+..+...+...|++++|+..++++.+.+|.++.+|..++.+|...|++++|++.+++..+..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 567788888889999999999999999999999999999999999999999999999998887653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.12 E-value=4.2e-06 Score=76.89 Aligned_cols=119 Identities=8% Similarity=0.006 Sum_probs=80.9
Q ss_pred HHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCC
Q 038550 62 TNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTS 137 (423)
Q Consensus 62 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~ 137 (423)
..+...+.+.|++++|.+.+++.++.. +.+..++..+..+|.+.|++++|.+.+ +..+.+..+|..+..+|...|
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 334445667777888888888777664 345677777777888888888887777 334556677888888888888
Q ss_pred ChhhHHHHHHHHHhcCCCCchhhHHHHHHH--HHhHhhHHhhhHHHH
Q 038550 138 DCSESLSLFSEMRLLGMKHDVVSFMGAISA--CANLAAIKQGKEIHG 182 (423)
Q Consensus 138 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~ 182 (423)
++++|++.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 89 ~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888887753 2234455555544 777888888888887
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.10 E-value=8.9e-06 Score=61.30 Aligned_cols=114 Identities=11% Similarity=-0.077 Sum_probs=78.7
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-C-----CH-----HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC
Q 038550 225 ASWNTLILGYGMLGEVDTAINLFEAMREDGVG-Y-----DP-----VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT 293 (423)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p-----~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 293 (423)
..+......+.+.|++++|+..|++..+.... | +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l----- 86 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY----- 86 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----
Confidence 44666777888999999999999999875322 1 11 15555555566666666666665555431
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC-HhHH----HHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 038550 294 EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD-ANIW----GALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILL 366 (423)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 366 (423)
|++. .+.|+ ...| .....++...|++++|+..|+++.++.|.+......+
T Consensus 87 -----------------------~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 87 -----------------------FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp -----------------------HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred -----------------------hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 2211 33664 4466 7888899999999999999999999988876655444
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.02 E-value=3.2e-05 Score=52.61 Aligned_cols=79 Identities=15% Similarity=0.188 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038550 295 MHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAE 372 (423)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 372 (423)
..+..+...+...|++++|+..|++. ...| +...+..+...+...|++++|...++++.+..|.++..+..++.++.+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 34445555555666666666665554 2222 445566666666777777777777777777777776666666666554
Q ss_pred c
Q 038550 373 A 373 (423)
Q Consensus 373 ~ 373 (423)
.
T Consensus 90 ~ 90 (91)
T 1na3_A 90 Q 90 (91)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00015 Score=68.01 Aligned_cols=163 Identities=8% Similarity=-0.010 Sum_probs=130.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc----------HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038550 237 LGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGL----------VEKGKKYFDEMQADSVKPTEMHYACMVDLLGR 306 (423)
Q Consensus 237 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 306 (423)
....++|++.++++...... +...|+.--.++...|+ ++++...++.+.+.. +-+..+|+.-..++.+
T Consensus 42 ~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 34456889999999986433 56677776666666666 899999999999875 5577788877778888
Q ss_pred cC--ChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhc--------
Q 038550 307 AG--LMEDAVKLIKNL-PVEP-DANIWGALLGACRIYG-NVELGAWAAEHLFMLKPQHCGYYILLSNMYAEA-------- 373 (423)
Q Consensus 307 ~~--~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------- 373 (423)
.+ +++++++.++++ ...| +...|+.-...+...| .++++++.++++.+.+|.+..+|.....++.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 88 679999999998 4444 7788888777788888 899999999999999999999999988887764
Q ss_pred ------CChhHHHHHHHHHHhccccCCCCCcccccc
Q 038550 374 ------GKWDEASKVRELMKSREAKKNPGCSWVQTR 403 (423)
Q Consensus 374 ------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 403 (423)
+.++++++.+++... +.|+....|.-.+
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~ 233 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHR 233 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHH
Confidence 567889999988876 4577777777544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=8.7e-05 Score=55.27 Aligned_cols=110 Identities=9% Similarity=-0.109 Sum_probs=54.9
Q ss_pred cHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHh----cCChhHHHHHH
Q 038550 274 LVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI----YGNVELGAWAA 349 (423)
Q Consensus 274 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~ 349 (423)
++++|...|++..+.| .|... |...|...+.+++|++.|++.-..-++..+..|...|.. .+++++|...|
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 3444444444444443 12211 333344444444455554444112344444444444444 45566666666
Q ss_pred HHHHhcCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhcc
Q 038550 350 EHLFMLKPQHCGYYILLSNMYAE----AGKWDEASKVRELMKSRE 390 (423)
Q Consensus 350 ~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 390 (423)
+++.+. .++..+..|+..|.. .+++++|..++++..+.|
T Consensus 85 ~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 85 SKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 665554 344556666666666 566666666666665554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.96 E-value=6.6e-05 Score=51.31 Aligned_cols=69 Identities=14% Similarity=0.045 Sum_probs=60.3
Q ss_pred CCHhHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcccc
Q 038550 324 PDANIWGALLGACRIYGN---VELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAK 392 (423)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 392 (423)
.|+..+..+..++...++ .++|..+++++.+.+|.++.+...++..+.+.|++++|+..|+++.+....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 467778888888765544 799999999999999999999999999999999999999999999887543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.95 E-value=6.4e-06 Score=61.91 Aligned_cols=96 Identities=9% Similarity=0.036 Sum_probs=58.0
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHH
Q 038550 271 HGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAE 350 (423)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 350 (423)
+.+.+++|.+.++...+.. +.+...|..+..++...++++.+...++ .+++|+..|+
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~----------------------~~~eAi~~le 70 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQ----------------------MIQEAITKFE 70 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHH----------------------HHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHh----------------------HHHHHHHHHH
Confidence 3445566666666666543 3345555555555555544432222111 2457777777
Q ss_pred HHHhcCCCCcchHHHHHHHHHhcC-----------ChhHHHHHHHHHHhc
Q 038550 351 HLFMLKPQHCGYYILLSNMYAEAG-----------KWDEASKVRELMKSR 389 (423)
Q Consensus 351 ~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~ 389 (423)
++++++|.+..+|..++.+|...| ++++|++.|++..+.
T Consensus 71 ~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 71 EALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 777777777777777777777654 677777777777664
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.93 E-value=8.7e-05 Score=65.64 Aligned_cols=90 Identities=8% Similarity=-0.075 Sum_probs=52.0
Q ss_pred cchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHH
Q 038550 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF 202 (423)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (423)
..+|..+..+|.+.|++++|+..+++.++.. +.+...+..+..++...|++++|...++++.+..+. +...+..+..+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~ 350 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3455666666666666666666666666543 234455666666666666666666666666655432 34444555555
Q ss_pred HHhcCCHHHHHH
Q 038550 203 YTRSGRIDLANK 214 (423)
Q Consensus 203 ~~~~~~~~~A~~ 214 (423)
+...++.+++.+
T Consensus 351 ~~~~~~~~~a~k 362 (370)
T 1ihg_A 351 KQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.90 E-value=5.3e-05 Score=53.70 Aligned_cols=67 Identities=10% Similarity=-0.024 Sum_probs=61.7
Q ss_pred CCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 324 PDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
++...+..+...+...|++++|+..++++.+..|.++.++..++.++...|++++|+..+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3456788888999999999999999999999999999999999999999999999999999998754
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.88 E-value=7e-05 Score=68.48 Aligned_cols=131 Identities=8% Similarity=-0.063 Sum_probs=70.1
Q ss_pred HHhCCChHHHHHHHhhchhCC---CCCC----chhHHHHHHHhhcCCCCccHHHHHHHHHHc-----CC-CCc-hHHHHH
Q 038550 33 FAQNRLELKALQLVREMPIHN---EFPN----SVTLTNVLPACARGHFLRPGKEIHARIIRK-----GL-NFD-LFLTNA 98 (423)
Q Consensus 33 ~~~~~~~~~a~~~~~~m~~~~---~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~ 98 (423)
+..+|++++|..++++.++.. +.|+ ..+++.+..+|...|++++|..++++.++. |. .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 445677777777666654321 1111 235666666666666666666666665432 11 111 233444
Q ss_pred HHHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCc-hhhHHHHHHHHHhHhhHHhh
Q 038550 99 LTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHD-VVSFMGAISACANLAAIKQG 177 (423)
Q Consensus 99 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a 177 (423)
|...|...|++++|+.++ ++|+++++...... .|+ ..+...+..++...+.+++|
T Consensus 399 La~~~~~~G~~~eA~~~~-----------------------~~Al~i~~~~lG~~-Hp~~~~~~~~l~~~~~e~~~~~~a 454 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMI-----------------------CKAYAILLVTHGPS-HPITKDLEAMRMQTEMELRMFRQN 454 (490)
T ss_dssp HHHHHHHTTCHHHHHHHH-----------------------HHHHHHHHHHTCTT-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH-----------------------HHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555444443 33334443333222 233 23455566667788889999
Q ss_pred hHHHHHHHHh
Q 038550 178 KEIHGVTIRK 187 (423)
Q Consensus 178 ~~~~~~~~~~ 187 (423)
+.++..+++.
T Consensus 455 e~~~~~~~~~ 464 (490)
T 3n71_A 455 EFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=1.8e-05 Score=59.52 Aligned_cols=106 Identities=10% Similarity=0.045 Sum_probs=72.7
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH----------HHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038550 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVE----------KGKKYFDEMQADSVKPTEMHYACMVDLL 304 (423)
Q Consensus 235 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (423)
.+.+.+++|...++...+... -+...|..+..++...++++ +|+..|++.++.. +-+...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 456789999999999988743 37888988888888887754 6666666666643 22345555555555
Q ss_pred HhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchH
Q 038550 305 GRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYY 363 (423)
Q Consensus 305 ~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 363 (423)
...|.+ .|+.. ...|++++|+..|+++++++|.+....
T Consensus 91 ~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~~y~ 128 (158)
T 1zu2_A 91 TSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNTHYL 128 (158)
T ss_dssp HHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCHHHH
Confidence 544432 23221 112689999999999999999975443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00013 Score=49.50 Aligned_cols=66 Identities=21% Similarity=0.258 Sum_probs=60.4
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
+...+..+...+...|++++|+..++++.+..|.++..+..++.++...|++++|+..+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 355777888899999999999999999999999999999999999999999999999999988753
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.73 E-value=9.8e-05 Score=52.87 Aligned_cols=80 Identities=11% Similarity=0.048 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 278 GKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFML 355 (423)
Q Consensus 278 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 355 (423)
|...|++..+.. +.+...+..+...|...|++++|+..|++. ...| +...|..+..++...|++++|...++++.+.
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455555555542 334556666666666667777776666665 2233 4556666777777777777777777777776
Q ss_pred CCC
Q 038550 356 KPQ 358 (423)
Q Consensus 356 ~p~ 358 (423)
.|.
T Consensus 83 ~~~ 85 (115)
T 2kat_A 83 AQS 85 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00064 Score=50.48 Aligned_cols=112 Identities=11% Similarity=-0.073 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHH
Q 038550 238 GEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR----AGLMEDA 313 (423)
Q Consensus 238 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 313 (423)
+++++|..+|++..+.| .|+.. +...|...+..++|...|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46788999999998887 33333 6677777788888999999998865 55677778888887 7899999
Q ss_pred HHHHhhCCCCCCHhHHHHHHHHHHh----cCChhHHHHHHHHHHhcCC
Q 038550 314 VKLIKNLPVEPDANIWGALLGACRI----YGNVELGAWAAEHLFMLKP 357 (423)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 357 (423)
+++|++.-..-++..+..|...|.. .++.++|...++++.+.+.
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999988333567778888888888 8899999999999988753
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00013 Score=50.50 Aligned_cols=81 Identities=14% Similarity=0.100 Sum_probs=53.2
Q ss_pred HHHHHHhcCChHHHHHHHhhC-CCCC-CHh-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 038550 300 MVDLLGRAGLMEDAVKLIKNL-PVEP-DAN-IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKW 376 (423)
Q Consensus 300 l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 376 (423)
....+...|++++|...|+++ ...| +.. .+..+..++...|++++|+..++++.+.+|.++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 344566677777777777766 3344 455 67777777778888888888888888888877766532 344
Q ss_pred hHHHHHHHHHHh
Q 038550 377 DEASKVRELMKS 388 (423)
Q Consensus 377 ~~A~~~~~~m~~ 388 (423)
.++...+++...
T Consensus 78 ~~a~~~~~~~~~ 89 (99)
T 2kc7_A 78 MDILNFYNKDMY 89 (99)
T ss_dssp HHHHHHHCCTTH
T ss_pred HHHHHHHHHHhc
Confidence 455555555443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00021 Score=64.26 Aligned_cols=82 Identities=7% Similarity=0.031 Sum_probs=63.9
Q ss_pred cCChHHHHHHHhhC---------CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCCcc---hHHHHHH
Q 038550 307 AGLMEDAVKLIKNL---------PVEPD-ANIWGALLGACRIYGNVELGAWAAEHLFM-----LKPQHCG---YYILLSN 368 (423)
Q Consensus 307 ~~~~~~a~~~~~~~---------~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~ 368 (423)
.|++++|+.++++. ...|+ ..+++.|..+|...|++++|+.+++++++ .+|++|. .++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46777777777654 12343 35788889999999999999999999876 3566654 4778999
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 038550 369 MYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 369 ~~~~~g~~~~A~~~~~~m~~ 388 (423)
.|..+|++++|+.++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999998865
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.53 E-value=1.2e-05 Score=70.78 Aligned_cols=209 Identities=11% Similarity=0.067 Sum_probs=122.9
Q ss_pred cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHH
Q 038550 21 KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALT 100 (423)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 100 (423)
.|+..|..++....+.|.+++-+..+...++.. -++..=+.|+-+|++.+++.+-.+++. .|+..-...+.
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VG 151 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVG 151 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHH
Confidence 455666777777777777777777666555442 233444566777777777665554432 35555556666
Q ss_pred HHHHhcCChHHHHHHhchh-------------------------cCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCC
Q 038550 101 DMYAKCGCLNLAQNVFNIS-------------------------FRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMK 155 (423)
Q Consensus 101 ~~~~~~g~~~~a~~~~~~~-------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 155 (423)
+-|...|.++.|.-+|... ..++.+|-.+-.+|...+++.-|.-.--.+.- .
T Consensus 152 Drcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---h 228 (624)
T 3lvg_A 152 DRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---H 228 (624)
T ss_dssp HHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---C
T ss_pred HHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---c
Confidence 6677777777776666211 12556677777777777777666554444432 2
Q ss_pred CchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhc----cCCCC-------Ch
Q 038550 156 HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFD----CLPVK-------DS 224 (423)
Q Consensus 156 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~----~~~~~-------~~ 224 (423)
|| -...++..|-..|.+++.+.+++..... -......|+-|.-.|++- ++++..+-++ ++.-| ..
T Consensus 229 ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~a 304 (624)
T 3lvg_A 229 AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQA 304 (624)
T ss_dssp SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTT
T ss_pred HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 22 1223444566677777777777766531 224556667777667664 3444444333 33322 44
Q ss_pred hhHHHHHHHHhccCCHHHHHH
Q 038550 225 ASWNTLILGYGMLGEVDTAIN 245 (423)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~ 245 (423)
..|..++-.|+.-.+++.|..
T Consensus 305 hLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 305 HLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TCHHHHHHHHHHHTCHHHHHH
T ss_pred hhHHHHHHHHhcchhHHHHHH
Confidence 567777777777777776543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0043 Score=44.32 Aligned_cols=148 Identities=9% Similarity=0.006 Sum_probs=103.7
Q ss_pred HHHHHHH--HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038550 227 WNTLILG--YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLL 304 (423)
Q Consensus 227 ~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (423)
...|+.+ +.-.|..++..++..+.... .+..-||.+|.-....-+-+-..++++.+-+. .|.
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi---------- 71 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL---------- 71 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------
Confidence 3344443 44568888888888887764 25566777766555555555555555544332 121
Q ss_pred HhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 038550 305 GRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRE 384 (423)
Q Consensus 305 ~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 384 (423)
..+|++......+-.++ .+...++..+..+..+|+-+.-.+++..+....+.++.+...++.+|.+.|+..+|.+++.
T Consensus 72 s~C~NlKrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 72 DKCQNLKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp GGCSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhhhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 23556666666665553 3445566677888999999999999999877888889999999999999999999999999
Q ss_pred HHHhcccc
Q 038550 385 LMKSREAK 392 (423)
Q Consensus 385 ~m~~~~~~ 392 (423)
+.-++|++
T Consensus 150 ~AC~kG~k 157 (172)
T 1wy6_A 150 EACKKGEK 157 (172)
T ss_dssp HHHHTTCH
T ss_pred HHHHhhhH
Confidence 99999874
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00038 Score=48.04 Aligned_cols=59 Identities=20% Similarity=0.283 Sum_probs=54.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcc-hHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 332 LLGACRIYGNVELGAWAAEHLFMLKPQHCG-YYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 332 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
....+...|++++|+..++++.+..|.++. .+..++.+|...|++++|+..+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456678999999999999999999999999 99999999999999999999999998764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00072 Score=60.76 Aligned_cols=94 Identities=12% Similarity=-0.064 Sum_probs=72.7
Q ss_pred ccCcHHHHHHHHHHHHHc---CCCCC----hhhHHHHHHHHHhcCChHHHHHHHhhC---------CCCCCH-hHHHHHH
Q 038550 271 HGGLVEKGKKYFDEMQAD---SVKPT----EMHYACMVDLLGRAGLMEDAVKLIKNL---------PVEPDA-NIWGALL 333 (423)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~---------~~~~~~-~~~~~l~ 333 (423)
..|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|+.++++. ...|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999999887763 12232 467888999999999999999988776 244543 4788999
Q ss_pred HHHHhcCChhHHHHHHHHHHh-----cCCCCcchHH
Q 038550 334 GACRIYGNVELGAWAAEHLFM-----LKPQHCGYYI 364 (423)
Q Consensus 334 ~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~ 364 (423)
..|...|++++|+.+++++.+ .+|++|.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 999999999999999999977 4677765543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00071 Score=60.87 Aligned_cols=88 Identities=13% Similarity=0.142 Sum_probs=62.5
Q ss_pred HHHHHhcCChHHHHHHHhhC---------CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCCcc---h
Q 038550 301 VDLLGRAGLMEDAVKLIKNL---------PVEPD-ANIWGALLGACRIYGNVELGAWAAEHLFM-----LKPQHCG---Y 362 (423)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~~---------~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~ 362 (423)
+..+.+.|++++|+.++++. ...|+ ..+++.|..+|...|++++|+.+++++++ .+|.+|. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33455667777777777654 11222 34677788888888888888888888766 3455554 4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 363 YILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 363 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
++.|+..|..+|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77788888899999999888888754
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00086 Score=46.47 Aligned_cols=65 Identities=12% Similarity=0.033 Sum_probs=40.7
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 038550 223 DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQAD 288 (423)
Q Consensus 223 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 288 (423)
+...+..+...|...|++++|+..|++..+.... +...|..+..+|...|++++|...+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455666666666667777777777666665322 4456666666666677777777666666543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0024 Score=57.40 Aligned_cols=100 Identities=12% Similarity=-0.054 Sum_probs=77.8
Q ss_pred HHHHhccCcHHHHHHHHHHHHHc---CCCCC----hhhHHHHHHHHHhcCChHHHHHHHhhC---------CCCCC-HhH
Q 038550 266 LTACSHGGLVEKGKKYFDEMQAD---SVKPT----EMHYACMVDLLGRAGLMEDAVKLIKNL---------PVEPD-ANI 328 (423)
Q Consensus 266 l~~~~~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~---------~~~~~-~~~ 328 (423)
+..+.+.|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 45566788999999999988764 12232 457888899999999999999988766 24454 346
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCCcchHHH
Q 038550 329 WGALLGACRIYGNVELGAWAAEHLFM-----LKPQHCGYYIL 365 (423)
Q Consensus 329 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~~ 365 (423)
++.|...|...|++++|+.+++++.+ .+|++|.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 88899999999999999999999977 46887766543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.011 Score=51.09 Aligned_cols=136 Identities=12% Similarity=0.023 Sum_probs=61.9
Q ss_pred CChhhHHHHHHHHh--ccC---CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcc--------CcHHHHHHHHHHHHH
Q 038550 222 KDSASWNTLILGYG--MLG---EVDTAINLFEAMREDGVGYD-PVSYIAILTACSHG--------GLVEKGKKYFDEMQA 287 (423)
Q Consensus 222 ~~~~~~~~li~~~~--~~g---~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~--------~~~~~a~~~~~~~~~ 287 (423)
.+...|...+++.. ..+ +..+|..+|++..+. .|+ ...|..+..+|... .........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 35566666555432 222 346778888887775 343 34444443333210 000011111111111
Q ss_pred c-CCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 038550 288 D-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359 (423)
Q Consensus 288 ~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 359 (423)
. ..+.+..+|..+...+...|++++|...++++ .+.|+...|..+...+...|++++|.+.++++..++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 1 11334444444444444445555555555554 233444444444455555555555555555555555543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.13 Score=48.34 Aligned_cols=314 Identities=8% Similarity=-0.049 Sum_probs=156.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCC-chHHHHHHHHHHH
Q 038550 26 WNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNF-DLFLTNALTDMYA 104 (423)
Q Consensus 26 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 104 (423)
|..... ..+.|++..+..+...+...-+. .-..|..+...+.. .... ++-.-+.+..-.| ....-+.-+..+.
T Consensus 10 ~~~a~~-a~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l~~-~~~~---ev~~Fl~~~~~~p~~~~Lr~~~l~~l~ 83 (618)
T 1qsa_A 10 YAQIKQ-AWDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDLMN-QPAV---TVTNFVRANPTLPPARTLQSRFVNELA 83 (618)
T ss_dssp HHHHHH-HHHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTGGG-CCHH---HHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCccc-CCHH---HHHHHHHHCCCChhHHHHHHHHHHHHH
Confidence 444444 45678888888887776543221 11244444333321 1222 4444444432222 3344556677788
Q ss_pred hcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHh--hhHHHH
Q 038550 105 KCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ--GKEIHG 182 (423)
Q Consensus 105 ~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~--a~~~~~ 182 (423)
+.+++.....++...+.+...-.....+....|+..+|......+-..| ...+..+..++..+.+.|.+.. ...=++
T Consensus 84 ~~~~w~~~l~~~~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~ 162 (618)
T 1qsa_A 84 RREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIR 162 (618)
T ss_dssp HTTCHHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred hCCCHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 8899999888775445555556667788888899888888777776655 3445566666666665443322 111111
Q ss_pred HHHHhc-----------cCcch-HHHHHHHHHHHhcCCHHHHHHHhccCCCCChh---hHHHHHHHHhccCCHHHHHHHH
Q 038550 183 VTIRKH-----------LHTHL-FVANSILDFYTRSGRIDLANKIFDCLPVKDSA---SWNTLILGYGMLGEVDTAINLF 247 (423)
Q Consensus 183 ~~~~~~-----------~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~ 247 (423)
.+...| +.++. .....++..+.+ ...+........ ++.. .+..-+.-+.+ .+.+.|...+
T Consensus 163 ~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~~~rlar-~d~~~A~~~~ 237 (618)
T 1qsa_A 163 LAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTTG-ATDFTRQMAAVAFASVAR-QDAENARLMI 237 (618)
T ss_dssp HHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHSC-CCHHHHHHHHHHHHHHHH-HCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhccC-CChhhHHHHHHHHHHHHh-cCHHHHHHHH
Confidence 111111 11111 111222222211 122222222211 1111 11112222333 3677787777
Q ss_pred HHHHHcCCCCCHHH----HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCC
Q 038550 248 EAMREDGVGYDPVS----YIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE 323 (423)
Q Consensus 248 ~~m~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 323 (423)
....... ..+... ...+...+...+...++...+...... ..+.......+..-.+.|+++.|...|+.|...
T Consensus 238 ~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~ 314 (618)
T 1qsa_A 238 PSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLARLPME 314 (618)
T ss_dssp HHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT
T ss_pred Hhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHcccc
Confidence 7776543 223322 222333334444244555555554432 233333334444445668888888888887433
Q ss_pred C-C-HhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 324 P-D-ANIWGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 324 ~-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
+ + ..-.-=+.+++...|+.++|..+|+.+.+
T Consensus 315 ~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 315 AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 2 1 22222234566677888888888887764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.032 Score=54.86 Aligned_cols=155 Identities=11% Similarity=0.093 Sum_probs=99.9
Q ss_pred HHhcCCChhhHHH-HHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHH
Q 038550 132 GYSQTSDCSESLS-LFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRID 210 (423)
Q Consensus 132 ~~~~~~~~~~a~~-~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 210 (423)
.....+++++|.+ ++.. + |+......++..+.+.|.++.|.++.+. + ..-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~-----~~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD-------Q-----DQKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------H-----HHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC-------c-----chheehhhhcCCHH
Confidence 3345667777655 3311 1 1112225566666677777777655421 1 11233456789999
Q ss_pred HHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 038550 211 LANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290 (423)
Q Consensus 211 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 290 (423)
.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++-+.....|
T Consensus 670 ~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~- 737 (814)
T 3mkq_A 670 LARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG- 737 (814)
T ss_dssp HHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 9999988775 678899999999999999999999998753 3344444555777777666665555544
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHhhCC
Q 038550 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321 (423)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 321 (423)
-++.-..+|.+.|++++|++++.+++
T Consensus 738 -----~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 738 -----KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp -----CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred -----chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 13444556677788888877776653
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0054 Score=53.03 Aligned_cols=135 Identities=14% Similarity=0.081 Sum_probs=95.0
Q ss_pred CCCCHHHHHHHHHHHh--c---cCcHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHh---cC-C-------hHHHHHHH
Q 038550 255 VGYDPVSYIAILTACS--H---GGLVEKGKKYFDEMQADSVKPT-EMHYACMVDLLGR---AG-L-------MEDAVKLI 317 (423)
Q Consensus 255 ~~p~~~~~~~ll~~~~--~---~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~~-~-------~~~a~~~~ 317 (423)
.+.+...|...+.+.. . .....+|..+|++..+. .|+ ...|..+..+|.- .+ . ...+.+..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 3557778888877643 2 23468899999999986 454 4455544444421 11 1 11222222
Q ss_pred hhCC-CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcccc
Q 038550 318 KNLP-VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAK 392 (423)
Q Consensus 318 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 392 (423)
..+. ...++.++..+...+...|++++|...++++..++|. ...|..++..+.-.|++++|.+.+++....+..
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 2332 2447888888888788889999999999999999964 567788899999999999999999998876543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.033 Score=54.75 Aligned_cols=168 Identities=13% Similarity=0.077 Sum_probs=106.7
Q ss_pred HHHHHhCCChHHHHH-HHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 038550 30 VANFAQNRLELKALQ-LVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC 108 (423)
Q Consensus 30 l~~~~~~~~~~~a~~-~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 108 (423)
.......+++++|.+ ++..+. +......++..+.+.|.++.|.++.+. |. .-.......|+
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~ 667 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQ 667 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTC
T ss_pred HhHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCC
Confidence 344556888988877 553322 122336777778888888888766531 11 11344567899
Q ss_pred hHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhc
Q 038550 109 LNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKH 188 (423)
Q Consensus 109 ~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 188 (423)
++.|.++.+.. .+...|..+...+.+.++++.|.+.|.++.+ |..+...+...++.+...++-+.....|
T Consensus 668 ~~~A~~~~~~~-~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 668 LTLARDLLTDE-SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHHHTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhh-CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999887433 3567899999999999999999999998753 3344445555666666555554444433
Q ss_pred cCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHH
Q 038550 189 LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249 (423)
Q Consensus 189 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 249 (423)
. ++....+|.+.|++++|.+++ .+.+++++|..+-+.
T Consensus 738 ~------~~~A~~~~~~~g~~~~a~~~~------------------~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 738 K------FNLAFNAYWIAGDIQGAKDLL------------------IKSQRFSEAAFLGST 774 (814)
T ss_dssp C------HHHHHHHHHHHTCHHHHHHHH------------------HHTTCHHHHHHHHHH
T ss_pred c------hHHHHHHHHHcCCHHHHHHHH------------------HHcCChHHHHHHHHH
Confidence 2 133344566677777776654 455566666665443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0035 Score=46.56 Aligned_cols=91 Identities=16% Similarity=0.018 Sum_probs=62.4
Q ss_pred cHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---ChHHHHHHHhhC-CCC-C--CHhHHHHHHHHHHhcCChhHHH
Q 038550 274 LVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAG---LMEDAVKLIKNL-PVE-P--DANIWGALLGACRIYGNVELGA 346 (423)
Q Consensus 274 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~-~~~-~--~~~~~~~l~~~~~~~~~~~~a~ 346 (423)
....+.+.|.+....| +++..+...+..++++.+ ++++++.+|++. ... | +...+-.|.-++.+.|++++|.
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455566666665554 356666666677777766 455777777666 222 4 2445555667889999999999
Q ss_pred HHHHHHHhcCCCCcchHHH
Q 038550 347 WAAEHLFMLKPQHCGYYIL 365 (423)
Q Consensus 347 ~~~~~~~~~~p~~~~~~~~ 365 (423)
+.++.+.+.+|++..+...
T Consensus 92 ~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHH
Confidence 9999999999988655443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0045 Score=51.31 Aligned_cols=53 Identities=15% Similarity=0.077 Sum_probs=27.6
Q ss_pred CChhHHHHHHHHHHhcCCCC-cchHHHHHHHHHhc-CChhHHHHHHHHHHhcccc
Q 038550 340 GNVELGAWAAEHLFMLKPQH-CGYYILLSNMYAEA-GKWDEASKVRELMKSREAK 392 (423)
Q Consensus 340 ~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~ 392 (423)
|+.++|.+.|+++++++|.. ...+..+++.++.. |+.++|.+.+++.......
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 55555555555555555542 55555555555542 5555555555555554443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.01 Score=40.30 Aligned_cols=69 Identities=12% Similarity=0.000 Sum_probs=45.8
Q ss_pred CCChhhHHHHHHHHHhcCC---hHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 038550 291 KPTEMHYACMVDLLGRAGL---MEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359 (423)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 359 (423)
+.+...+..+..++...++ .++|..+|++. ...| ++.....+...+...|++++|+..|+++.+..|.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3455566666666654443 57777777766 4445 45566666677777888888888888888777763
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.01 Score=41.23 Aligned_cols=69 Identities=12% Similarity=0.009 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhhC-----C----CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHH
Q 038550 298 ACMVDLLGRAGLMEDAVKLIKNL-----P----VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILL 366 (423)
Q Consensus 298 ~~l~~~~~~~~~~~~a~~~~~~~-----~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 366 (423)
..|...+.+.|+++.|...|+.. . -.+...++..|..++.+.|+++.|...++++.+..|.++.+...+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 34444445555555555554443 0 123456778888899999999999999999999999987765544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.066 Score=40.82 Aligned_cols=104 Identities=17% Similarity=0.130 Sum_probs=62.6
Q ss_pred HHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 038550 201 DFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKK 280 (423)
Q Consensus 201 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 280 (423)
....+.|+++.|.++.+.+. +...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+...+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~--~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLN--DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHC--CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHhC--CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 33456677777777766552 566777777777777777777777776542 2333334455566655555
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC
Q 038550 281 YFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP 321 (423)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 321 (423)
+-+.....| -++.-...+.-.|+++++.++|.+.+
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 544444443 13444455556677777777776664
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.65 E-value=3.2e-06 Score=74.43 Aligned_cols=262 Identities=10% Similarity=0.060 Sum_probs=151.7
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHH
Q 038550 22 NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTD 101 (423)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 101 (423)
.+..|..|..+..+.+++.+|++.|-+ .+ |+..|..++.++.+.|.++.-...+....+.. .++.+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk---A~---Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK---AD---DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC---CS---CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh---CC---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 456788888888888888887765532 22 66778888888888888888888776655442 23333445666
Q ss_pred HHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHH
Q 038550 102 MYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIH 181 (423)
Q Consensus 102 ~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 181 (423)
+|++.++..+.++++. .||..-...+..-|...|.++.|.-+|
T Consensus 125 ayAk~~rL~elEefl~-------------------------------------~~N~A~iq~VGDrcf~e~lYeAAKily 167 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------------------------------------GPNNAHIQQVGDRCYDEKMYDAAKLLY 167 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------------------------------------CCSSSCTHHHHHHHHHSCCSTTSSTTG
T ss_pred HHHhhCcHHHHHHHHc-------------------------------------CCCcccHHHHHHHHHHccCHHHHHHHH
Confidence 6666666555444432 233333334444444444444444333
Q ss_pred HHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH
Q 038550 182 GVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261 (423)
Q Consensus 182 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 261 (423)
..+. -|..|...+.+.|++..|.+.-++.. ++.||..+-.+|...+.+.-|.-.--.+.- .|| -
T Consensus 168 s~is---------N~akLAstLV~L~~yq~AVdaArKAn--s~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--e 231 (624)
T 3lvg_A 168 NNVS---------NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--E 231 (624)
T ss_dssp GGSC---------CCTTTSSSSSSCSGGGSSTTTTTTCC--SSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--C
T ss_pred HhCc---------cHHHHHHHHHHHHHHHHHHHHHHhcC--ChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--H
Confidence 2211 12233444455566655544433332 667788877888888777766544333332 121 2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCC---C-------CHhHHHH
Q 038550 262 YIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVE---P-------DANIWGA 331 (423)
Q Consensus 262 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~-------~~~~~~~ 331 (423)
...++..|...|.+++-+.+++.-.... +...-.|+.|.-.|++- ++++.++.++....+ | ....|.-
T Consensus 232 L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~E 309 (624)
T 3lvg_A 232 LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE 309 (624)
T ss_dssp CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHH
Confidence 3345566777888888777777766331 34556677777777665 566666666554111 1 2334555
Q ss_pred HHHHHHhcCChhHHH
Q 038550 332 LLGACRIYGNVELGA 346 (423)
Q Consensus 332 l~~~~~~~~~~~~a~ 346 (423)
+.-.|.+...++.|.
T Consensus 310 lvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 310 LVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHHHTCHHHHH
T ss_pred HHHHHhcchhHHHHH
Confidence 666666666666553
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0075 Score=44.77 Aligned_cols=80 Identities=11% Similarity=-0.039 Sum_probs=64.1
Q ss_pred HHHHHHHhhC--CCCCCHhHHHHHHHHHHhcC---ChhHHHHHHHHHHhcC-C-CCcchHHHHHHHHHhcCChhHHHHHH
Q 038550 311 EDAVKLIKNL--PVEPDANIWGALLGACRIYG---NVELGAWAAEHLFMLK-P-QHCGYYILLSNMYAEAGKWDEASKVR 383 (423)
Q Consensus 311 ~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~ 383 (423)
..+.+.|.+. .-.++..+.-.+..++++++ +.++++.+++...+.+ | .+...+..++.+|.+.|++++|++++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3444444443 22468888888889999988 6779999999999988 6 45778888999999999999999999
Q ss_pred HHHHhcc
Q 038550 384 ELMKSRE 390 (423)
Q Consensus 384 ~~m~~~~ 390 (423)
+.+.+..
T Consensus 95 ~~lL~ie 101 (152)
T 1pc2_A 95 RGLLQTE 101 (152)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9998743
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.064 Score=38.23 Aligned_cols=92 Identities=17% Similarity=0.035 Sum_probs=59.1
Q ss_pred CcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH---HHHHHhhC-CCC-C--CHhHHHHHHHHHHhcCChhHH
Q 038550 273 GLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED---AVKLIKNL-PVE-P--DANIWGALLGACRIYGNVELG 345 (423)
Q Consensus 273 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~-~~~-~--~~~~~~~l~~~~~~~~~~~~a 345 (423)
.....+.+-|.+....| .++..+--.+..++++...... ++.+++.+ ... | .....-.|.-++.+.|++++|
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34445555565555544 3566665566667777666554 66666665 222 3 222344455678899999999
Q ss_pred HHHHHHHHhcCCCCcchHHH
Q 038550 346 AWAAEHLFMLKPQHCGYYIL 365 (423)
Q Consensus 346 ~~~~~~~~~~~p~~~~~~~~ 365 (423)
.+.++.+++..|.+..+...
T Consensus 94 ~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHH
Confidence 99999999999988766543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.035 Score=38.47 Aligned_cols=65 Identities=12% Similarity=-0.074 Sum_probs=54.8
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC-------CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 325 DANIWGALLGACRIYGNVELGAWAAEHLFMLK-------PQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
+..-...|...+...|+++.|..-++.+.+.. +..+.++..++.+|.+.|++++|..++++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556678889999999999999999998753 344567889999999999999999999999764
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.013 Score=48.55 Aligned_cols=82 Identities=16% Similarity=0.098 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhc-----CChHHHHHHHhhC-CCCCC--HhHHHHHHHHHHhc-CCh
Q 038550 275 VEKGKKYFDEMQADSVKPT---EMHYACMVDLLGRA-----GLMEDAVKLIKNL-PVEPD--ANIWGALLGACRIY-GNV 342 (423)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~-~~~~~--~~~~~~l~~~~~~~-~~~ 342 (423)
...|...+++..+. .|+ ...|..|...|... |+.++|.+.|++. .+.|+ ..++..+...++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45566666666664 344 45666777777763 7888888888776 55562 56666667777664 888
Q ss_pred hHHHHHHHHHHhcCCC
Q 038550 343 ELGAWAAEHLFMLKPQ 358 (423)
Q Consensus 343 ~~a~~~~~~~~~~~p~ 358 (423)
+++.+.++++....|.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 8888888888887765
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.29 Score=37.26 Aligned_cols=129 Identities=12% Similarity=0.039 Sum_probs=86.2
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 038550 232 LGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLME 311 (423)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 311 (423)
......|+++.|.++.+++ -+...|..|.......|+++-|+..|.+... +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3445778999998887765 3778899999999999999999988887654 344555666678877
Q ss_pred HHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 312 DAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386 (423)
Q Consensus 312 ~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 386 (423)
....+-+....+- -++.....+...|+++++.+++.+... +..-.......|-.+.|.++.+++
T Consensus 78 ~L~kla~iA~~~g---~~n~af~~~l~lGdv~~~i~lL~~~~r--------~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRE---DFGSMLLNTFYNNSTKERSSIFAEGGS--------LPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHTCHHHHHHHHHHTTC--------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc---cHHHHHHHHHHcCCHHHHHHHHHHCCC--------hHHHHHHHHHcCcHHHHHHHHHHh
Confidence 7665544331111 244455667788999999998866432 111111222346677788887776
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.26 Score=35.41 Aligned_cols=140 Identities=9% Similarity=-0.066 Sum_probs=83.5
Q ss_pred hcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHH
Q 038550 134 SQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213 (423)
Q Consensus 134 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 213 (423)
.-.|..++..+++.+.... .+..-|+-+|.-....-+-+-..++++ +.|--.|.. .+|++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd---~IGkiFDis----------~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLD---KIGSYFDLD----------KCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHH---HHGGGSCGG----------GCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHH---HHhhhcCcH----------hhhcHHHHH
Confidence 3456677777777776652 233444444433333333333333333 333222221 223333333
Q ss_pred HHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC
Q 038550 214 KIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVK 291 (423)
Q Consensus 214 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 291 (423)
..+-.+. .+.......+..+...|+-++-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.++-+.|++
T Consensus 82 ~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 3333222 2344556667778888888888888888644 34678888888889999999999999999998888864
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.037 Score=40.55 Aligned_cols=108 Identities=10% Similarity=0.024 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHhccCcH------HHHHHHHHHHHHcCCCCChh-hHHHHHH------HHHhcCChHHHHHHHhhC---C
Q 038550 258 DPVSYIAILTACSHGGLV------EKGKKYFDEMQADSVKPTEM-HYACMVD------LLGRAGLMEDAVKLIKNL---P 321 (423)
Q Consensus 258 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~~~~~~a~~~~~~~---~ 321 (423)
|..+|-..+....+.|++ ++..++|++.... ++|+.. .|...+. .+...+++++|.++|+.+ .
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 667787777777777888 7888888888775 566531 1111111 112346777777777766 1
Q ss_pred CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 038550 322 VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367 (423)
Q Consensus 322 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 367 (423)
-+- ..+|....+.-.++|++..|.+++.++....|.........+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 122 566666666667778888888888888777776655444443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.16 Score=37.30 Aligned_cols=51 Identities=6% Similarity=-0.109 Sum_probs=23.4
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 340 GNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 340 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
+|.++|.++|+.+.+....-..+|...+..-.++|+.+.|.+++.+....+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 445555555555544422223334444444445555555555555444433
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.051 Score=52.01 Aligned_cols=55 Identities=13% Similarity=0.011 Sum_probs=51.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 038550 333 LGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMK 387 (423)
Q Consensus 333 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 387 (423)
.+.+...|+++.|+.+.+++...-|.+-.+|..|+.+|...|+|+.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4667889999999999999999999999999999999999999999999999985
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.15 E-value=0.83 Score=44.86 Aligned_cols=118 Identities=14% Similarity=0.062 Sum_probs=56.4
Q ss_pred HHHHHHhcCCHHHHHHHhccCC-CCChhhH--HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH-HHH---HHHHHHhc
Q 038550 199 ILDFYTRSGRIDLANKIFDCLP-VKDSASW--NTLILGYGMLGEVDTAINLFEAMREDGVGYDPV-SYI---AILTACSH 271 (423)
Q Consensus 199 l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~---~ll~~~~~ 271 (423)
+...+.-.|+-+....++..+. ..+.... ..+.-++...|+.+.+..+++.+... .++. -|. .+.-+|+.
T Consensus 496 LGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaG 572 (963)
T 4ady_A 496 MGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAG 572 (963)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTT
T ss_pred HhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcC
Confidence 3344455566665555554432 1122222 22233344566666666666666653 1222 122 23345666
Q ss_pred cCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC
Q 038550 272 GGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 272 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (423)
.|+.....+++..+.... ..+......+.-++...|+.+.+.++++.+
T Consensus 573 TGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L 620 (963)
T 4ady_A 573 TGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLL 620 (963)
T ss_dssp SCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTG
T ss_pred CCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 667666666666666531 222333333333444456655555665544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.12 Score=45.64 Aligned_cols=55 Identities=15% Similarity=0.021 Sum_probs=33.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 038550 332 LLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELM 386 (423)
Q Consensus 332 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 386 (423)
++..+...|+.+++...++.+...+|-+...+..++.+|.+.|+..+|++.|+++
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4445555666666666666666666666666666666666666666666666554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.39 E-value=0.15 Score=36.33 Aligned_cols=85 Identities=11% Similarity=-0.078 Sum_probs=62.9
Q ss_pred hcCChHHHHHHHhhC--CCCCCHhHHHHHHHHHHhcCChhH---HHHHHHHHHhcC-C-CCcchHHHHHHHHHhcCChhH
Q 038550 306 RAGLMEDAVKLIKNL--PVEPDANIWGALLGACRIYGNVEL---GAWAAEHLFMLK-P-QHCGYYILLSNMYAEAGKWDE 378 (423)
Q Consensus 306 ~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~ 378 (423)
....+..+.+.|.+. .-.++..+--.+..++.++.+... ++.+++.....+ | ........|+-++.+.|+|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 333444555555544 124777777778888888887665 889999988876 4 345667778889999999999
Q ss_pred HHHHHHHHHhcc
Q 038550 379 ASKVRELMKSRE 390 (423)
Q Consensus 379 A~~~~~~m~~~~ 390 (423)
|++.++.+.+..
T Consensus 93 A~~~~~~lL~~e 104 (126)
T 1nzn_A 93 ALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999998754
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=94.23 E-value=2.2 Score=36.03 Aligned_cols=168 Identities=11% Similarity=0.032 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHH----HHHHHHhcCCCCchhhHHHHHHHHHh
Q 038550 95 LTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLS----LFSEMRLLGMKHDVVSFMGAISACAN 170 (423)
Q Consensus 95 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~m~~~~~~~~~~~~~~ll~~~~~ 170 (423)
.|.++..=|.+.+++++|.+++. .-...+.+.|+...|-+ +++-..+.+++++......++..+..
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~----------~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELIS----------QGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHH----------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 44556666778888888888761 11233455566555544 35555666778887777777766644
Q ss_pred HhhHH-hhhHHHHHHHH----hc--cCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhcc---CCH
Q 038550 171 LAAIK-QGKEIHGVTIR----KH--LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGML---GEV 240 (423)
Q Consensus 171 ~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~ 240 (423)
....+ .-.++++.+++ .| ..-++.....+...|.+.|++.+|+.-|-.-...+...+..++.-+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 22111 12233444433 22 1235666777888888888888888766422222344444433332222 322
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038550 241 DTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287 (423)
Q Consensus 241 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 287 (423)
.++ +...-..++ -|...++...|..+++...+
T Consensus 185 ~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 185 STV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred chH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 221 111112222 34566788888888776653
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.11 E-value=0.41 Score=35.88 Aligned_cols=118 Identities=12% Similarity=0.014 Sum_probs=64.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHc-CCCCCh-------hhHHHHHHHHHhcCChHHHHHHHhhC----CCCC-CHh
Q 038550 261 SYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTE-------MHYACMVDLLGRAGLMEDAVKLIKNL----PVEP-DAN 327 (423)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~-~~~ 327 (423)
++..-+..+...+.++.|+-+.+.+... +..|+. .++..+.+++...+++.+|...|++. ..-+ +..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3444566677778888888777776554 223332 24455667777788888887777764 1111 110
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 328 IWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 328 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
....+. . ...... -. ..+.+...-..++.+|.+.|++++|+.+++.+..+.
T Consensus 102 ~~~~~~-~---~ss~p~-------s~-~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 102 VRPSTG-N---SASTPQ-------SQ-CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred cccccc-c---cCCCcc-------cc-cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 100000 0 000000 00 012233555668889999999999999988765443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.13 E-value=9.9 Score=37.54 Aligned_cols=83 Identities=13% Similarity=0.038 Sum_probs=34.9
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCC
Q 038550 234 YGMLGEVDTAINLFEAMREDGVGYDPVSY--IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYA--CMVDLLGRAGL 309 (423)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ 309 (423)
++-.|+.+....+++.+.+.. +.... ..+.-++...|+.+.+..+++.+.... .|....-. ++.-+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 344455555555555544421 22222 222222334555555555555555421 12221111 12233445555
Q ss_pred hHHHHHHHhhC
Q 038550 310 MEDAVKLIKNL 320 (423)
Q Consensus 310 ~~~a~~~~~~~ 320 (423)
.....+++..+
T Consensus 576 ~~aIq~LL~~~ 586 (963)
T 4ady_A 576 NSAVKRLLHVA 586 (963)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 54444455444
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.82 E-value=4.7 Score=41.34 Aligned_cols=80 Identities=6% Similarity=-0.047 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHh----chhcCCc-----chHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHH
Q 038550 94 FLTNALTDMYAKCGCLNLAQNVF----NISFRDE-----VSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGA 164 (423)
Q Consensus 94 ~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 164 (423)
.-|..++..+.+.+.++.+.++- +...++. ..|..+...+...|++++|...+-.+.....+ ......+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHH
Confidence 34667777777778777776655 1122221 24777888888889999988888877665433 3345566
Q ss_pred HHHHHhHhhHH
Q 038550 165 ISACANLAAIK 175 (423)
Q Consensus 165 l~~~~~~~~~~ 175 (423)
+..+|..+..+
T Consensus 978 V~~lce~~~~~ 988 (1139)
T 4fhn_B 978 VNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHCCHH
T ss_pred HHHHHhCCChh
Confidence 66666655443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.69 E-value=2.1 Score=31.15 Aligned_cols=74 Identities=12% Similarity=0.005 Sum_probs=49.6
Q ss_pred CCChhhHHHHHHHHHhcCCh---HHHHHHHhhC-CCCC-CH-hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHH
Q 038550 291 KPTEMHYACMVDLLGRAGLM---EDAVKLIKNL-PVEP-DA-NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI 364 (423)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~-~~~~-~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 364 (423)
.|+..+--.+..++++..+. .+++.+++.+ ...| +. ...-.|.-++.+.|++++|.+..+.+++..|.+..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 56666666667777777654 4566666665 2234 22 33444556788889999999999999998888755433
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.62 E-value=3.6 Score=42.13 Aligned_cols=162 Identities=9% Similarity=0.001 Sum_probs=88.6
Q ss_pred HHHHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhh
Q 038550 98 ALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQG 177 (423)
Q Consensus 98 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 177 (423)
.++..+...+..+-+.++..-.+.+...--.+..+|...|++++|...|.+.-. |+..+......+.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~------------ 883 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLR------------ 883 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHH------------
T ss_pred HHHHHHHHhhhHHHHHHHhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhc------------
Confidence 344555566666666665554555555555566777777778777777765421 2211111000000
Q ss_pred hHHHHHHHHhc--cCcchHHHHHHHHHHHhcCCHHHHHHHhcc----CCCCCh----hhHHHHHHHHhccCCHHHHHHHH
Q 038550 178 KEIHGVTIRKH--LHTHLFVANSILDFYTRSGRIDLANKIFDC----LPVKDS----ASWNTLILGYGMLGEVDTAINLF 247 (423)
Q Consensus 178 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~----~~~~~li~~~~~~g~~~~a~~~~ 247 (423)
-+..+.... ...-..-|..++..+.+.+.++.+.++-.. ....+. ..|..+.+++...|++++|...+
T Consensus 884 --~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 884 --EFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp --HHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred --ccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 000011100 111223455666677777776666554432 222221 25778888888999999998888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 038550 248 EAMREDGVGYDPVSYIAILTACSHGGLVE 276 (423)
Q Consensus 248 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 276 (423)
-.+..... -...+..|+..+|..|..+
T Consensus 962 ~~~pd~~~--r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 962 MVLSTTPL--KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHSSS--CHHHHHHHHHHHHHHCCHH
T ss_pred HhCCCHHH--HHHHHHHHHHHHHhCCChh
Confidence 88776543 3455666776666665543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.02 E-value=0.88 Score=40.15 Aligned_cols=65 Identities=11% Similarity=0.091 Sum_probs=39.3
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC--------CCCCCHhH
Q 038550 263 IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL--------PVEPDANI 328 (423)
Q Consensus 263 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~~~~~~~~ 328 (423)
..++.++...|+++++...+..+.... +.+...+..+|.+|.+.|+..+|++.|+++ |+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 344555566666666666666665543 445566666677777777766666665543 55565444
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.36 E-value=3.3 Score=32.16 Aligned_cols=47 Identities=4% Similarity=-0.172 Sum_probs=24.0
Q ss_pred hHHHHHHHhhC---CCC-CCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 038550 310 MEDAVKLIKNL---PVE-PDANIWGALLGACRIYGNVELGAWAAEHLFMLK 356 (423)
Q Consensus 310 ~~~a~~~~~~~---~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 356 (423)
..++.++|..| ++- --...|......+...|++.+|..+|+..++.+
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44445554444 222 234455555555555566666666666655544
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.35 E-value=9.7 Score=34.18 Aligned_cols=184 Identities=10% Similarity=0.070 Sum_probs=114.1
Q ss_pred CCChhhHHHHHHHHHhc-----CCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHH----HHhc
Q 038550 136 TSDCSESLSLFSEMRLL-----GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF----YTRS 206 (423)
Q Consensus 136 ~~~~~~a~~~~~~m~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~ 206 (423)
.++++.|++.+..+.+. ...........++..|...++++...+.+..+.+....... ....+++. ....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~-ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL-SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH-HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHhcC
Confidence 36788888887666542 23445667778889999999999988877766553322221 12233332 2233
Q ss_pred CCHH--HHHHHhccCC---CC--C-----hhhHHHHHHHHhccCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHH
Q 038550 207 GRID--LANKIFDCLP---VK--D-----SASWNTLILGYGMLGEVDTAINLFEAMRED--GVGYD---PVSYIAILTAC 269 (423)
Q Consensus 207 ~~~~--~A~~~~~~~~---~~--~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~---~~~~~~ll~~~ 269 (423)
...+ .-..+.+.+. .. - ......|...+...|++.+|..++..+... |.... ...+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3222 2333333332 11 1 122355777888899999999999998642 22211 23566667788
Q ss_pred hccCcHHHHHHHHHHHHHc----CCCCC--hhhHHHHHHHHHhcCChHHHHHHHhhC
Q 038550 270 SHGGLVEKGKKYFDEMQAD----SVKPT--EMHYACMVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 270 ~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (423)
...+++.+|..+++++... ..+|+ ...+...+..+...+++.+|-+.|.++
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 8899999999999887532 11222 234566677777888888887776654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.17 E-value=2.7 Score=31.53 Aligned_cols=58 Identities=5% Similarity=-0.128 Sum_probs=31.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcC-CCCC-------HHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038550 230 LILGYGMLGEVDTAINLFEAMREDG-VGYD-------PVSYIAILTACSHGGLVEKGKKYFDEMQA 287 (423)
Q Consensus 230 li~~~~~~g~~~~a~~~~~~m~~~~-~~p~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 287 (423)
-++.+...|.++.|+-+...+.... ..|+ ..++..+..++...+++.+|...|++.+.
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3445555666666665555533211 1122 12455566666777777777777776543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=90.13 E-value=2.5 Score=28.53 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=38.0
Q ss_pred hCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 038550 319 NLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367 (423)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 367 (423)
.+.+-|++.+..+.+++|.+.+|+..|.++++-++..-.....+|..++
T Consensus 38 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 38 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 3467789999999999999999999999999888776654455566554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=90.12 E-value=3.1 Score=28.08 Aligned_cols=64 Identities=11% Similarity=0.111 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038550 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL 303 (423)
Q Consensus 239 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 303 (423)
+.=+..+-++.+....+.|++......+.+|.+.+++..|.++++-++.+ ..+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHH
Confidence 44466777777777788899999999999999999999999999888876 22334567766643
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.89 E-value=1.1 Score=32.07 Aligned_cols=74 Identities=12% Similarity=0.005 Sum_probs=46.2
Q ss_pred CCChhhHHHHHHHHHhcCCh---HHHHHHHhhC-CCCC--CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHH
Q 038550 291 KPTEMHYACMVDLLGRAGLM---EDAVKLIKNL-PVEP--DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYI 364 (423)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 364 (423)
.|+..+--.+..++++..+. .+++.+++.+ ...| ....+--|.-++.+.|++++|.+..+.+.+..|.+..+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 45655555566667766654 3555666555 2234 2334445556777888888888888888888887755433
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=89.71 E-value=7.4 Score=31.85 Aligned_cols=118 Identities=11% Similarity=0.062 Sum_probs=63.8
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChh----hHHHHHHHHHhcC
Q 038550 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEM----HYACMVDLLGRAG 308 (423)
Q Consensus 233 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~ 308 (423)
...+.|+++++++.+..-.+.. +-|...-..++..+|-.|++++|.+-++...+. .|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH-----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHH-----
Confidence 4556777777777777666653 236666667777777777777777777776664 33322 33333332
Q ss_pred ChHHHH-HHHhhC---C-CCCCHhHHHHHHHHH--HhcCChhHHHHHHHHHHhcCCCCc
Q 038550 309 LMEDAV-KLIKNL---P-VEPDANIWGALLGAC--RIYGNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 309 ~~~~a~-~~~~~~---~-~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~p~~~ 360 (423)
+... ++|.-- + +.....-...++.+. ...|+.++|..+-.++.+.-|..+
T Consensus 78 --E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 78 --AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp --HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred --HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 1111 122211 0 111222333344443 345777777777777766655543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.44 E-value=0.96 Score=43.44 Aligned_cols=120 Identities=13% Similarity=0.047 Sum_probs=72.9
Q ss_pred HHHHHHHhCCC-hHHHHHHHhhchhCCCCCCchhH--HHHHHHhhcCCC-CccHHHHHHHHHHc------CCCCc-h---
Q 038550 28 AMVANFAQNRL-ELKALQLVREMPIHNEFPNSVTL--TNVLPACARGHF-LRPGKEIHARIIRK------GLNFD-L--- 93 (423)
Q Consensus 28 ~ll~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~~-~--- 93 (423)
.++..+...++ ++.|+++|+++.... |...++ ..++..+...++ --+|.+++.+.++. ..++. .
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 44455555666 578999999988764 433332 223333333322 12344444444321 11211 1
Q ss_pred -------HHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHH
Q 038550 94 -------FLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEM 149 (423)
Q Consensus 94 -------~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 149 (423)
.....-.+.+...|+++-|+++- ...+.+-.+|..|..+|...|+++.|+-.++.+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11222234466789999998888 445667789999999999999999999988876
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=88.78 E-value=1.2 Score=36.38 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=32.5
Q ss_pred HHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 038550 304 LGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359 (423)
Q Consensus 304 ~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 359 (423)
+.+.|++++|+.....- +-.| |...-..|+..+|-.|++++|.+-++...+++|..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 44556666666554433 3344 55555556666666666666666666666666553
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.19 E-value=4.7 Score=28.88 Aligned_cols=74 Identities=11% Similarity=-0.014 Sum_probs=51.4
Q ss_pred CCCCCHHHHHHHHHHHhccCc---HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCCHh
Q 038550 254 GVGYDPVSYIAILTACSHGGL---VEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPDAN 327 (423)
Q Consensus 254 ~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~ 327 (423)
+-.|+..+-..+..++.+..+ ..+++.+++++.+.+..-....+-.|.-++.+.|++++|.+..+.+ .+.|+-.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 345677776666777776654 4568888888887652123445556777888999999999998887 6677533
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=87.87 E-value=6.1 Score=29.14 Aligned_cols=79 Identities=15% Similarity=0.042 Sum_probs=45.3
Q ss_pred HHHHHHhhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 312 DAVKLIKNL-PVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLK--PQHCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 312 ~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
.+...|... ..+.|+.-...-+...-.. +.+..+|..+...+ .....+|...+..+...|++++|.++|+.=.+
T Consensus 53 rc~~~f~~~~~YknD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 53 HLMKEFLDKKKYHNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp HHHHHHTTCGGGTTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444433 3344555444433322222 22566666665543 45556677777777777888888777777666
Q ss_pred ccccC
Q 038550 389 REAKK 393 (423)
Q Consensus 389 ~~~~~ 393 (423)
++.+|
T Consensus 130 ~~A~P 134 (152)
T 4a1g_A 130 NQAEP 134 (152)
T ss_dssp TTCBS
T ss_pred cCCcc
Confidence 66555
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=87.74 E-value=12 Score=31.66 Aligned_cols=166 Identities=14% Similarity=0.045 Sum_probs=98.5
Q ss_pred HHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHhcc
Q 038550 197 NSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINL----FEAMREDGVGYDPVSYIAILTACSHG 272 (423)
Q Consensus 197 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~~~~p~~~~~~~ll~~~~~~ 272 (423)
.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ ++-..+.+++++......++..+..-
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 4455567777888888777532 22334556776665554 45556677888888877777776553
Q ss_pred CcHH-HHHHHHHHHHHc----CC--CCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhc---CCh
Q 038550 273 GLVE-KGKKYFDEMQAD----SV--KPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY---GNV 342 (423)
Q Consensus 273 ~~~~-~a~~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~ 342 (423)
..-+ .=.++++++++- |- .-+......+...|.+.|++.+|...|- .+..-|...+..++.-+... |..
T Consensus 106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 2111 123344444432 21 1256677888889999999999998876 33222455555555444433 333
Q ss_pred hHHHHHHHHHHhcCCCCcchH-HHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 343 ELGAWAAEHLFMLKPQHCGYY-ILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 343 ~~a~~~~~~~~~~~p~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
.+ ...| ...+--|.-.|+...|..+++...+.
T Consensus 185 ~e---------------~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 185 ST---------------VAEFFSRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HH---------------HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ch---------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 32 2222 22234566788999999998877543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=86.43 E-value=16 Score=32.00 Aligned_cols=25 Identities=12% Similarity=0.029 Sum_probs=12.1
Q ss_pred hHHHHHHHHHhHhhHHhhhHHHHHH
Q 038550 160 SFMGAISACANLAAIKQGKEIHGVT 184 (423)
Q Consensus 160 ~~~~ll~~~~~~~~~~~a~~~~~~~ 184 (423)
....+...|.+.|+.++..+++...
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344445555555555555554433
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.10 E-value=15 Score=31.28 Aligned_cols=168 Identities=13% Similarity=0.038 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHH----HHHHHhcCCCCchhhHHHHHHHHHh
Q 038550 95 LTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSL----FSEMRLLGMKHDVVSFMGAISACAN 170 (423)
Q Consensus 95 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~~~~~~~~~ll~~~~~ 170 (423)
+|.++..=|.+.+++++|.+++- .-...+.+.|+...+-++ ++-+.+.++++|......++..+..
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~----------~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILA----------SVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHH----------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 45566666888999999998871 112334555665554444 3555667788888777777776654
Q ss_pred HhhHH-hhhHHHHHHHH----hc--cCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHH
Q 038550 171 LAAIK-QGKEIHGVTIR----KH--LHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTA 243 (423)
Q Consensus 171 ~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 243 (423)
...-+ .=..+++.+++ .| ..-++.....+...|.+.+++.+|+.-|-.-..+.+..+..++.-+...+...+
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e- 185 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT- 185 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG-
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc-
Confidence 33211 11223333333 22 233556667788899999999999888743222223455444433333322111
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 038550 244 INLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQA 287 (423)
Q Consensus 244 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 287 (423)
++...-..++ -|...++...|..+++...+
T Consensus 186 -------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 -------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1222222333 34556677777776666554
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=85.78 E-value=7.9 Score=27.76 Aligned_cols=64 Identities=11% Similarity=0.111 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038550 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDL 303 (423)
Q Consensus 239 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 303 (423)
|.=+..+-++.+....+.|++......+.+|.+.+++..|..+|+-++.+ ..+...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence 34456667777777788999999999999999999999999999988877 23445567777653
|
| >2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A | Back alignment and structure |
|---|
Probab=84.72 E-value=10 Score=28.45 Aligned_cols=31 Identities=10% Similarity=-0.066 Sum_probs=15.9
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 038550 326 ANIWGALLGACRIYGNVELGAWAAEHLFMLK 356 (423)
Q Consensus 326 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 356 (423)
+..|......+-..|++.+|..+|+..++.+
T Consensus 96 AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 96 AQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3444444445555555555555555555543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=84.42 E-value=7 Score=28.02 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=40.3
Q ss_pred HhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 038550 317 IKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367 (423)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 367 (423)
+-.+.+-|++.+....+++|.+.+|+..|.++++-++..-.+...+|.-++
T Consensus 79 l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 79 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 334467899999999999999999999999999998876655455666654
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.11 E-value=7.5 Score=26.09 Aligned_cols=85 Identities=11% Similarity=-0.073 Sum_probs=57.4
Q ss_pred CCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh-chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHh
Q 038550 73 FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRL 151 (423)
Q Consensus 73 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 151 (423)
..++|..+-+.+...+. ...+--.-+..+...|++++|..+. ....||...|.+|-. .+.|..+++...+.++-.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666665542 3333333445577889999999888 566788888876654 467888888888888887
Q ss_pred cCCCCchhhHH
Q 038550 152 LGMKHDVVSFM 162 (423)
Q Consensus 152 ~~~~~~~~~~~ 162 (423)
.| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 77 56655553
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.05 E-value=7.4 Score=34.74 Aligned_cols=60 Identities=8% Similarity=-0.066 Sum_probs=34.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCChHHHHHHHhhC
Q 038550 261 SYIAILTACSHGGLVEKGKKYFDEMQAD--SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (423)
+...+...|.+.|+++.|.+.+.++... +...-...+..+++.+...+++..+...++++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4555666666666666666666666654 22222344555566666666666666665554
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=83.56 E-value=8 Score=26.00 Aligned_cols=85 Identities=12% Similarity=0.013 Sum_probs=53.9
Q ss_pred CCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh-chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHh
Q 038550 73 FLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF-NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRL 151 (423)
Q Consensus 73 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 151 (423)
..++|..+-+.+...+. ...+--.-+..+...|++++|..+. ....||...|.+|-.. +.|..+++...+.++-.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45666666666655542 2233333345567788888888888 5567777777666543 56777777777777777
Q ss_pred cCCCCchhhHH
Q 038550 152 LGMKHDVVSFM 162 (423)
Q Consensus 152 ~~~~~~~~~~~ 162 (423)
.| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 66 55555553
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=81.88 E-value=13 Score=27.08 Aligned_cols=65 Identities=8% Similarity=-0.032 Sum_probs=29.2
Q ss_pred CCHhHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 324 PDANIWGALLGACRIYGN---VELGAWAAEHLFMLKPQ-HCGYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
|+..+--.+..++.++.+ ..+++.+++......|. .......|+-++.+.|++++|+++.+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344443344444444432 23444455555444442 223333444455555555555555555444
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=81.09 E-value=38 Score=32.08 Aligned_cols=43 Identities=19% Similarity=0.090 Sum_probs=26.7
Q ss_pred HHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhc
Q 038550 27 NAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR 70 (423)
Q Consensus 27 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 70 (423)
=.+|-.|.+.|.+++|.++.++.... +.--...+...+..++.
T Consensus 156 Wa~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 156 WALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 35677889999999999998876542 11112456666666664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 423 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.67 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.67 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.34 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.27 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.26 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.25 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.25 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.22 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.22 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.21 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.18 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.04 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.84 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.82 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.82 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.81 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.78 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.77 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.73 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.73 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.68 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.68 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.64 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.63 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.55 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.44 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.38 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.37 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.37 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.35 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.34 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.33 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.3 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.23 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.22 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.2 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.2 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.18 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.12 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.12 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.02 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.0 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.93 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.89 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.89 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.79 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.68 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.68 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.67 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.62 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.61 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.39 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 97.35 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.33 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.14 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.08 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.64 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.98 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.73 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.64 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.79 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.08 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.3e-24 Score=192.08 Aligned_cols=367 Identities=12% Similarity=0.008 Sum_probs=248.6
Q ss_pred cccCCcchhHHhhcccCC--c-ChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHH
Q 038550 3 AKSSRPAEASYLFHNIAE--K-NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKE 79 (423)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 79 (423)
.+.|++++|++.|+++.+ | +..++..+...+.+.|++++|.+.|++..+.. +-+..++..+..++.+.|++++|..
T Consensus 10 ~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~ 88 (388)
T d1w3ba_ 10 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccccccc
Confidence 356778888887777654 3 46677777777778888888888887776653 2244567777777777788888888
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCC
Q 038550 80 IHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMK 155 (423)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 155 (423)
.+....+.. +.+..............+....+.... ....................+....+...+.+..... +
T Consensus 89 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 166 (388)
T d1w3ba_ 89 HYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-P 166 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-T
T ss_pred ccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-c
Confidence 777777665 333344444444444455555444444 2223344455556666666777777777777666543 3
Q ss_pred CchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHH
Q 038550 156 HDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLIL 232 (423)
Q Consensus 156 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~ 232 (423)
-+...+..+...+...|+++.|...++...+..+ .+...+..+...+...|++++|...++... ..+...+..+..
T Consensus 167 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 245 (388)
T d1w3ba_ 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHH
Confidence 3455666667777777788888877777776543 234556667777777777777777776544 345566667777
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 038550 233 GYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMED 312 (423)
Q Consensus 233 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 312 (423)
.+.+.|++++|...|++..+... -+..++..+..++...|++++|...++...... +.+...+..+...+...|++++
T Consensus 246 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 323 (388)
T d1w3ba_ 246 VYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHH
Confidence 77777778888777777776532 245667777777777777777777777776653 5566677777777777777777
Q ss_pred HHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 038550 313 AVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGK 375 (423)
Q Consensus 313 a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 375 (423)
|+..|++. .+.| +..++..+...+...|++++|+..|+++.+++|.++.++..++.+|.+.|+
T Consensus 324 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 324 AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 77777765 4555 455677777777777788888877877777777777777777777776664
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=3.9e-23 Score=183.95 Aligned_cols=367 Identities=12% Similarity=0.012 Sum_probs=297.7
Q ss_pred HHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 038550 29 MVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGC 108 (423)
Q Consensus 29 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 108 (423)
+...+.+.|++++|.+.++++.+.. +-+...+..+..++.+.|++++|...++++++.. +.+..++..+..+|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 4456788899999999999998764 2356788888899999999999999999999875 4567889999999999999
Q ss_pred hHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHH
Q 038550 109 LNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVT 184 (423)
Q Consensus 109 ~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 184 (423)
+++|...+ ...+.+...+..........+....+........... .................+....+...+...
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence 99999999 3334455555566666666677777777666666554 344445555556666677777777777776
Q ss_pred HHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH
Q 038550 185 IRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVS 261 (423)
Q Consensus 185 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 261 (423)
....+ .....+..+...+...|++++|...++... +.+..+|..+...+...|++++|...+++....+. .+...
T Consensus 162 ~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 239 (388)
T d1w3ba_ 162 IETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVV 239 (388)
T ss_dssp HHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHH
T ss_pred hccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHH
Confidence 66543 345666778889999999999999998654 44677899999999999999999999999988643 36778
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC--CCCCCHhHHHHHHHHHHhc
Q 038550 262 YIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL--PVEPDANIWGALLGACRIY 339 (423)
Q Consensus 262 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~ 339 (423)
+..+...+.+.|++++|...|+++.+.. +-+..++..+...+...|++++|.+.++.. ....+...+..+...+...
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHC
Confidence 8888999999999999999999998864 445778889999999999999999999887 3345778889999999999
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCCCCcccccc
Q 038550 340 GNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWVQTR 403 (423)
Q Consensus 340 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 403 (423)
|++++|+..++++.+..|.++.++..++.+|.+.|++++|+..+++..+. .|+....|..++
T Consensus 319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg 380 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 380 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998764 455544454443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=8.1e-15 Score=126.42 Aligned_cols=262 Identities=13% Similarity=0.005 Sum_probs=151.1
Q ss_pred HHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHh
Q 038550 101 DMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQ 176 (423)
Q Consensus 101 ~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 176 (423)
..+.+.|++++|...| +..+.+..+|..+..++...|++++|...|++..+.. +-+...+..+...+...|++++
T Consensus 27 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~ 105 (323)
T d1fcha_ 27 LRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQ 105 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccccc
Confidence 3444555555555555 2223344445555555555555555555555554432 2233344444445555555555
Q ss_pred hhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC-
Q 038550 177 GKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGV- 255 (423)
Q Consensus 177 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~- 255 (423)
|.+.++.+.......... ........ . ..+.......+..+...+.+.+|...+.+..+...
T Consensus 106 A~~~~~~~~~~~~~~~~~-~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~ 168 (323)
T d1fcha_ 106 ACEILRDWLRYTPAYAHL-VTPAEEGA-G---------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPT 168 (323)
T ss_dssp HHHHHHHHHHTSTTTGGG-CC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred cccchhhHHHhccchHHH-HHhhhhhh-h---------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence 555555444322111000 00000000 0 00001111122233445667778888887765432
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHH
Q 038550 256 GYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALL 333 (423)
Q Consensus 256 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~ 333 (423)
.++...+..+...+...|++++|...+++..... +-+...|..+...|...|++++|.+.|++. ...| +...+..+.
T Consensus 169 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg 247 (323)
T d1fcha_ 169 SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 247 (323)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHH
Confidence 3356677778888888899999999998888763 345777888888888999999999888876 4455 566788888
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCcch-----------HHHHHHHHHhcCChhHHHH
Q 038550 334 GACRIYGNVELGAWAAEHLFMLKPQHCGY-----------YILLSNMYAEAGKWDEASK 381 (423)
Q Consensus 334 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~A~~ 381 (423)
.+|...|++++|+..|+++++..|.+... |..+..++...|+.+.+..
T Consensus 248 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 248 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88999999999999999998887765443 3445556666666665543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=5.3e-15 Score=127.61 Aligned_cols=242 Identities=13% Similarity=-0.040 Sum_probs=171.6
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHh
Q 038550 126 YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR 205 (423)
Q Consensus 126 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 205 (423)
.-.....+.+.|++++|+..|++..+.. +-+..+|..+..++...|++++|...+.++.+..+. +...+..+..+|..
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccc
Confidence 3456677788888888888888888754 335667777778888888888888888887765432 34555556666666
Q ss_pred cCCHHHHHHHhccCCC--CCh-hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 038550 206 SGRIDLANKIFDCLPV--KDS-ASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYF 282 (423)
Q Consensus 206 ~~~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 282 (423)
.|++++|.+.++.... |+. ..+....... ...+.......+..+...+...+|...+
T Consensus 100 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHH
Confidence 6666666666654431 110 0000000000 0000111111222344556778888888
Q ss_pred HHHHHcC-CCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 038550 283 DEMQADS-VKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359 (423)
Q Consensus 283 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 359 (423)
.+..... -.++..++..+...+...|++++|+..|++. ...| +...|..+...+...|++++|+..++++.+.+|.+
T Consensus 160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (323)
T d1fcha_ 160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 239 (323)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhcc
Confidence 8887753 2345677888889999999999999999987 4445 57789999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 360 CGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
+.++..++.+|.+.|++++|++.|++..+.
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999998874
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=3.6e-10 Score=97.80 Aligned_cols=259 Identities=11% Similarity=-0.026 Sum_probs=160.0
Q ss_pred HHHHhcCCChhhHHHHHHHHHhcCCCCc-----hhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCc-----chHHHHHH
Q 038550 130 IVGYSQTSDCSESLSLFSEMRLLGMKHD-----VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHT-----HLFVANSI 199 (423)
Q Consensus 130 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l 199 (423)
...+...|++++|++.+++..+.. +.+ ...+..+..++...|++++|...++...+..... ....+..+
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~-~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC-cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 445566677777777777666532 111 1244555566666777777777776665532111 12333445
Q ss_pred HHHHHhcCCHHHHHHHhccCC-------CC----ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC----CCCHHHHHH
Q 038550 200 LDFYTRSGRIDLANKIFDCLP-------VK----DSASWNTLILGYGMLGEVDTAINLFEAMREDGV----GYDPVSYIA 264 (423)
Q Consensus 200 ~~~~~~~~~~~~A~~~~~~~~-------~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~p~~~~~~~ 264 (423)
...+...|++..+...+.... .+ ....+..+...+...|+++.+...+........ .....++..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 566667777777766665432 11 123445566677778888888888877765322 122344555
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHc--CCCCC----hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-----CHhHHHHH
Q 038550 265 ILTACSHGGLVEKGKKYFDEMQAD--SVKPT----EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-----DANIWGAL 332 (423)
Q Consensus 265 ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-----~~~~~~~l 332 (423)
....+...++...+...+.+.... ..... ...+..+...+...|++++|...+++. ...| ....+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 566677777888777777766553 11111 223455566677888888888888776 2221 23455567
Q ss_pred HHHHHhcCChhHHHHHHHHHHhc------CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 333 LGACRIYGNVELGAWAAEHLFML------KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 333 ~~~~~~~~~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
..++...|++++|...++++... .|....++..++.+|.+.|++++|.+.+++..+.
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77888888888888888887642 2444566777888888888888888888877553
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.27 E-value=2.1e-11 Score=105.16 Aligned_cols=229 Identities=8% Similarity=-0.057 Sum_probs=160.7
Q ss_pred CCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHh--hHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHH
Q 038550 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLA--AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213 (423)
Q Consensus 136 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 213 (423)
.|++++|+..++...+.. +-+...+..+..++...+ +++++...+..+....+......+......+...+.+++|.
T Consensus 86 ~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al 164 (334)
T d1dcea1 86 AALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEEL 164 (334)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHH
Confidence 344667777777777653 334555555655555544 46778888887777655443333444556777788899999
Q ss_pred HHhccCCC---CChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 038550 214 KIFDCLPV---KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290 (423)
Q Consensus 214 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 290 (423)
..++.+.. .+...|+.+...+.+.|++++|...+....+. .|+. ..+...+...+..+++...+.......
T Consensus 165 ~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~- 238 (334)
T d1dcea1 165 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR- 238 (334)
T ss_dssp HHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-
Confidence 98887763 36678888888888888888776555543332 1111 122233445566667777777777653
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHH
Q 038550 291 KPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN 368 (423)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 368 (423)
+++...+..+...+...++.++|...+.+. ...| +..++..+...+...|++++|+..++++.+++|.+...|..+..
T Consensus 239 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~ 318 (334)
T d1dcea1 239 AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 318 (334)
T ss_dssp CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHH
Confidence 455566667777888889999999988877 5555 45678888899999999999999999999999998888888876
Q ss_pred HHH
Q 038550 369 MYA 371 (423)
Q Consensus 369 ~~~ 371 (423)
.+.
T Consensus 319 ~~~ 321 (334)
T d1dcea1 319 KFL 321 (334)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.26 E-value=1.6e-09 Score=91.88 Aligned_cols=185 Identities=12% Similarity=0.125 Sum_probs=91.1
Q ss_pred hHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC--C-C-hhhHHHHHHHHhccCCHHHHHHHHH
Q 038550 173 AIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPV--K-D-SASWNTLILGYGMLGEVDTAINLFE 248 (423)
Q Consensus 173 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~a~~~~~ 248 (423)
..+++..+++..++...+.+...+...+..+.+.|+++.|..+|+++.. | + ...|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3455666666665543444444555555555555666666655554421 1 1 2245555555555555555666655
Q ss_pred HHHHcCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC----CCC
Q 038550 249 AMREDGVGYDPVSYIAILTA-CSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL----PVE 323 (423)
Q Consensus 249 ~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~ 323 (423)
++.+.+.. +...|...... +...|+.+.|..+|+.+... .+.+...|...+..+.+.|+++.|..+|++. +..
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 55544321 22222222211 22334555555555555554 2334455555555555555555555555553 122
Q ss_pred CC--HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 038550 324 PD--ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH 359 (423)
Q Consensus 324 ~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 359 (423)
|+ ...|...+..-...|+.+.+..+++++.+..|..
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 21 2345555555555555555555555555544443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=1.5e-10 Score=98.44 Aligned_cols=226 Identities=9% Similarity=0.096 Sum_probs=167.3
Q ss_pred hhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcC-CHHHHHHHhccCC---CCChhhHHHHHHHH
Q 038550 159 VSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSG-RIDLANKIFDCLP---VKDSASWNTLILGY 234 (423)
Q Consensus 159 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~---~~~~~~~~~li~~~ 234 (423)
..++.+...+.+.+..++|...++.+++.++ .+...|+....++...| ++++|+..++... +.+..+|..+...+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP-~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence 4566666677788889999999999998754 34556677777777766 4899999888764 45778888888889
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-----
Q 038550 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL----- 309 (423)
Q Consensus 235 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 309 (423)
.+.|++++|+..++++.+.... +...|..+...+...|++++|...++.+++.. +-+...|+.+...+.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhh
Confidence 9999999999999998886433 67888888889999999999999999998874 4466777777666666555
Q ss_pred -hHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc--hHHHHHHHHHhc--CChhHHHHH
Q 038550 310 -MEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCG--YYILLSNMYAEA--GKWDEASKV 382 (423)
Q Consensus 310 -~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~--g~~~~A~~~ 382 (423)
+++|++.+.++ ...| +...|..+...+. ....+++...++.+.+..|.... .+..++..|... +..+.+...
T Consensus 201 ~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~ 279 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 279 (315)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred hhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 46777777665 4455 5666766655544 44567788888888887776443 445566666443 677778777
Q ss_pred HHHHHh
Q 038550 383 RELMKS 388 (423)
Q Consensus 383 ~~~m~~ 388 (423)
+++..+
T Consensus 280 ~~ka~~ 285 (315)
T d2h6fa1 280 LNKALE 285 (315)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=1.1e-09 Score=94.72 Aligned_cols=287 Identities=9% Similarity=-0.061 Sum_probs=152.8
Q ss_pred HHHHhhcCCCCccHHHHHHHHHHcCCCCc----hHHHHHHHHHHHhcCChHHHHHHhch----hc--CC----cchHHHH
Q 038550 64 VLPACARGHFLRPGKEIHARIIRKGLNFD----LFLTNALTDMYAKCGCLNLAQNVFNI----SF--RD----EVSYNIL 129 (423)
Q Consensus 64 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~----~~--~~----~~~~~~l 129 (423)
....+...|++++|.+++++.++.....+ ...+..+..+|...|++++|...|+. .+ ++ ..++..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34445667777777777777765532111 12445555566666666666666511 00 01 1223334
Q ss_pred HHHHhcCCChhhHHHHHHHHHhc----CCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHh
Q 038550 130 IVGYSQTSDCSESLSLFSEMRLL----GMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR 205 (423)
Q Consensus 130 ~~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 205 (423)
...+...|++..+...+.+.... +..... .....+..+...+..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~--------------------------------~~~~~~~~la~~~~~ 145 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLP--------------------------------MHEFLVRIRAQLLWA 145 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTST--------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhh--------------------------------HHHHHHHHHHHHHHH
Confidence 44455555555555555444321 101000 001122233444445
Q ss_pred cCCHHHHHHHhccCC----C----CChhhHHHHHHHHhccCCHHHHHHHHHHHHHcC--CCCC----HHHHHHHHHHHhc
Q 038550 206 SGRIDLANKIFDCLP----V----KDSASWNTLILGYGMLGEVDTAINLFEAMREDG--VGYD----PVSYIAILTACSH 271 (423)
Q Consensus 206 ~~~~~~A~~~~~~~~----~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~----~~~~~~ll~~~~~ 271 (423)
.|+++.+...+.... . .....+..+...+...+++..+...+.+..... .... ...+..+...+..
T Consensus 146 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (366)
T d1hz4a_ 146 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM 225 (366)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred hcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHh
Confidence 555555554443322 0 012234444455566667776666666544311 1111 1234455556777
Q ss_pred cCcHHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHhhC-------CCCCC-HhHHHHHHHHHHhcC
Q 038550 272 GGLVEKGKKYFDEMQADSVKP---TEMHYACMVDLLGRAGLMEDAVKLIKNL-------PVEPD-ANIWGALLGACRIYG 340 (423)
Q Consensus 272 ~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~ 340 (423)
.|+++.|...++......... ....+..+..++...|++++|...+++. +..|+ ...+..+...|...|
T Consensus 226 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 305 (366)
T d1hz4a_ 226 TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 305 (366)
T ss_dssp TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCC
Confidence 788888888877766542111 1234455667778888888888877765 33342 346677778888888
Q ss_pred ChhHHHHHHHHHHhcCCCC---------cchHHHHHHHHHhcCChhHHHHH
Q 038550 341 NVELGAWAAEHLFMLKPQH---------CGYYILLSNMYAEAGKWDEASKV 382 (423)
Q Consensus 341 ~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~ 382 (423)
++++|...++++.++.+.. ......++..+...++.+++.+-
T Consensus 306 ~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 306 RKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 9998988888887754221 12234455566677777777543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=1e-10 Score=96.78 Aligned_cols=219 Identities=11% Similarity=-0.023 Sum_probs=120.0
Q ss_pred CChhhHHHHHHHHHhcCCCCc---hhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHH
Q 038550 137 SDCSESLSLFSEMRLLGMKHD---VVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLAN 213 (423)
Q Consensus 137 ~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 213 (423)
.+.+.++.-+++........+ ..+|..+..++.+.|++++|...|++.++..+ .+..++..+..+|.+.|++++|+
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhh
Confidence 345566666667665432111 23555666777777788888887777777543 34556667777777777777777
Q ss_pred HHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 038550 214 KIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290 (423)
Q Consensus 214 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 290 (423)
..|+++. +.+..++..+..++...|++++|...|+...+... .+......+..++.+.+..+.+..+.......
T Consensus 92 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 168 (259)
T d1xnfa_ 92 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-- 168 (259)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--
T ss_pred hhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--
Confidence 7777654 33456677777777777777777777777766532 23333333334444445544444444444432
Q ss_pred CCChhhHHHHHHHHHhcCC----hHHHHHHHhhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 038550 291 KPTEMHYACMVDLLGRAGL----MEDAVKLIKNL-PVEPD-ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~----~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 360 (423)
.++...++ ++..+..... .+.+...+... ...|+ ..+|..+...+...|++++|...|+++++.+|.+.
T Consensus 169 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 243 (259)
T d1xnfa_ 169 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 243 (259)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence 22222222 2222211111 11222111111 11221 23455566667777777777777777777777654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.22 E-value=2.7e-09 Score=90.43 Aligned_cols=182 Identities=9% Similarity=-0.024 Sum_probs=144.1
Q ss_pred CHHHHHHHhccC----CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 038550 208 RIDLANKIFDCL----PVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFD 283 (423)
Q Consensus 208 ~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 283 (423)
..++|..+|++. .+.+...|...+..+.+.|+++.|..+|+++.+.........|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 356677777653 2346677888888899999999999999999876443345578899999999999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHH-HHhcCChHHHHHHHhhC-C-CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 038550 284 EMQADSVKPTEMHYACMVDL-LGRAGLMEDAVKLIKNL-P-VEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHC 360 (423)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 360 (423)
++.+.+ +.+...|...... +...|+.+.|..+|+++ . ...+...|..++..+...|+++.|..+|+++....|.++
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 998864 3344445444433 34468999999999988 3 234678999999999999999999999999999877554
Q ss_pred c----hHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 361 G----YYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 361 ~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
. +|...+..-...|+.+.+..+++++.+.-
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3 67788877788899999999999987754
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=1.5e-09 Score=92.10 Aligned_cols=206 Identities=11% Similarity=0.089 Sum_probs=101.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHh----chhcCCcchHHHHHHHHhcCC-ChhhHHHHHHHHHhcCCCCchhhHHHHHHHHH
Q 038550 95 LTNALTDMYAKCGCLNLAQNVF----NISFRDEVSYNILIVGYSQTS-DCSESLSLFSEMRLLGMKHDVVSFMGAISACA 169 (423)
Q Consensus 95 ~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 169 (423)
.++.+..++.+.+.+++|++++ +..+.+..+|+....++...| ++++|+..+++..+.. +-+..+|..+...+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHH
Confidence 4444444555555555555555 233444445555555555443 3555555555554432 223444545555555
Q ss_pred hHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHH
Q 038550 170 NLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEA 249 (423)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 249 (423)
+.|++++|...++.+.+.. +.+..+|..+...+...|++++|+..+++
T Consensus 124 ~l~~~~eAl~~~~kal~~d--------------------------------p~n~~a~~~~~~~~~~~~~~~~Al~~~~~ 171 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQD--------------------------------AKNYHAWQHRQWVIQEFKLWDNELQYVDQ 171 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHC--------------------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred hhccHHHHHHHHhhhhhhh--------------------------------hcchHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5555555555555544432 22455555566666666666666666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccC------cHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC---
Q 038550 250 MREDGVGYDPVSYIAILTACSHGG------LVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL--- 320 (423)
Q Consensus 250 m~~~~~~p~~~~~~~ll~~~~~~~------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--- 320 (423)
+.+.... +...|+.+...+.+.+ .+++|...+..+.+.. +.+...|..+...+.. ...+++.+.++..
T Consensus 172 al~~~p~-n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 172 LLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDL 248 (315)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHH
T ss_pred HHHHCCc-cHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHh
Confidence 6664322 4445554444433322 3456666666666543 3345555555444333 2334444444433
Q ss_pred -CCCCCHhHHHHHHHHH
Q 038550 321 -PVEPDANIWGALLGAC 336 (423)
Q Consensus 321 -~~~~~~~~~~~l~~~~ 336 (423)
....+...+..+...|
T Consensus 249 ~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 249 QPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp TTTCCCHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHH
Confidence 1122344444454444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=3.3e-10 Score=93.55 Aligned_cols=215 Identities=13% Similarity=0.015 Sum_probs=142.9
Q ss_pred hHHhhhHHHHHHHHhcc-C--cchHHHHHHHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHH
Q 038550 173 AIKQGKEIHGVTIRKHL-H--THLFVANSILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINL 246 (423)
Q Consensus 173 ~~~~a~~~~~~~~~~~~-~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~ 246 (423)
+.+.+..-++++..... . -...++..+..+|.+.|++++|...|++.. +.++.+|+.+..++.+.|++++|+..
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 33445555555554321 1 123456667888999999999999998765 45788899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC
Q 038550 247 FEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD 325 (423)
Q Consensus 247 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~ 325 (423)
|++..+.... +..++..+..++...|++++|...++...+.. +.+......+..++.+.+..+.+..+.... ...++
T Consensus 94 ~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (259)
T d1xnfa_ 94 FDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 171 (259)
T ss_dssp HHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC
T ss_pred hhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchh
Confidence 9999886432 45678888888999999999999999988864 334444444444555555555444443333 11222
Q ss_pred HhHHHHHHHHHH----hcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 326 ANIWGALLGACR----IYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 326 ~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
...++ ++..+. ..+..+.+...+.......|....++..++..|...|++++|+..|++..+..
T Consensus 172 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 172 QWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp STHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 22222 122221 22234444444444444556666778889999999999999999999987654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.04 E-value=3.8e-10 Score=97.06 Aligned_cols=248 Identities=7% Similarity=-0.113 Sum_probs=175.1
Q ss_pred hcCCChhhHHHHHHHHHhcCCCCchh-hHHHHHH----------HHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHH
Q 038550 134 SQTSDCSESLSLFSEMRLLGMKHDVV-SFMGAIS----------ACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDF 202 (423)
Q Consensus 134 ~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (423)
...+..++|++++++..+. .|+.. .|+..-. .+...|.+++|...++.+.+..+. +...+..+..+
T Consensus 40 ~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~ 116 (334)
T d1dcea1 40 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 116 (334)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHH
Confidence 3334457888888888774 45543 3322222 234456788999999998886543 34455556666
Q ss_pred HHhcC--CHHHHHHHhccCC---CCChhhHH-HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 038550 203 YTRSG--RIDLANKIFDCLP---VKDSASWN-TLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVE 276 (423)
Q Consensus 203 ~~~~~--~~~~A~~~~~~~~---~~~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 276 (423)
+...+ ++++|...+.++. +++...+. .....+...+.++.|+..++.+.+.... +...|..+..++...|+++
T Consensus 117 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~ 195 (334)
T d1dcea1 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 195 (334)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCC
T ss_pred HHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHH
Confidence 65555 5889988888764 34555554 4446777889999999999998887543 6788888888898988888
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 277 KGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL--PVEPDANIWGALLGACRIYGNVELGAWAAEHLFM 354 (423)
Q Consensus 277 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 354 (423)
+|...++..... .|+. ..+...+...+..+++...+.+. ...++...+..+...+...|+.++|...+.+...
T Consensus 196 ~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 270 (334)
T d1dcea1 196 DSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEP 270 (334)
T ss_dssp CSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 776655544432 1111 12333445566777777776655 2223445566667777888999999999999999
Q ss_pred cCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 355 LKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 355 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
.+|.+..++..++.+|...|++++|++++++..+..
T Consensus 271 ~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld 306 (334)
T d1dcea1 271 ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 306 (334)
T ss_dssp TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999998753
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=2.5e-08 Score=70.66 Aligned_cols=101 Identities=11% Similarity=0.025 Sum_probs=54.0
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhH
Q 038550 267 TACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVEL 344 (423)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~ 344 (423)
..+...|++++|+..|++.++.. +.+...|..+..+|...|++++|+..+++. .+.| ++..|..+..++...|++++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence 34555555555555555555542 334445555555555555555555555554 2222 44455555555555555555
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHH
Q 038550 345 GAWAAEHLFMLKPQHCGYYILLSN 368 (423)
Q Consensus 345 a~~~~~~~~~~~p~~~~~~~~l~~ 368 (423)
|+..++++.+..|.++.++..+..
T Consensus 90 A~~~~~~a~~~~p~~~~~~~~l~~ 113 (117)
T d1elwa_ 90 AKRTYEEGLKHEANNPQLKEGLQN 113 (117)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHH
Confidence 555555555555555555554443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.82 E-value=1.2e-08 Score=80.34 Aligned_cols=114 Identities=5% Similarity=-0.145 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHH
Q 038550 257 YDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLG 334 (423)
Q Consensus 257 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~ 334 (423)
|+...+......+.+.|++++|+..|++++... |.+...|..+..+|.+.|++++|+..|++. .+.| +...|..+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 566677777778888888888888888877764 456677777788888888888888888776 5566 4667777788
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038550 335 ACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371 (423)
Q Consensus 335 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 371 (423)
+|...|++++|+..|+++.++.|.+...+...+..+.
T Consensus 81 ~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l 117 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 8888888888888888887777655544443333333
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=1.7e-07 Score=72.78 Aligned_cols=139 Identities=10% Similarity=-0.073 Sum_probs=102.3
Q ss_pred HHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHH
Q 038550 200 LDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGK 279 (423)
Q Consensus 200 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 279 (423)
...+...|+++.|++.|.++.+++..+|..+..+|...|++++|++.|++..+.... +...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHHHH
Confidence 445678899999999999988888888888999999999999999999998886532 6778888888899999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC--CCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 038550 280 KYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLP--VEPD-ANIWGALLGACRIYGNVELGAWAAEHLFMLK 356 (423)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 356 (423)
..|++..... +.+... . +..++ ..++ ..++..+..++...|++++|.+.++.+.+..
T Consensus 91 ~~~~kAl~~~-~~n~~~------~-------------~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 91 KDLKEALIQL-RGNQLI------D-------------YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHTT-TTCSEE------E-------------CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhC-ccCchH------H-------------HHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9998887642 222110 0 00011 1111 2344556667888888888888888888877
Q ss_pred CCC
Q 038550 357 PQH 359 (423)
Q Consensus 357 p~~ 359 (423)
|..
T Consensus 151 ~~~ 153 (192)
T d1hh8a_ 151 SEP 153 (192)
T ss_dssp CSG
T ss_pred CCc
Confidence 764
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=4e-08 Score=73.94 Aligned_cols=119 Identities=8% Similarity=-0.008 Sum_probs=96.9
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcC
Q 038550 263 IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYG 340 (423)
Q Consensus 263 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~ 340 (423)
......|.+.|++++|...|+++.+.. +-+...|..+..+|...|++++|...|+++ .+.| +...|..+..++...|
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 334566889999999999999999875 557888888999999999999999999987 4455 5678999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCcchHHHHHHHH--HhcCChhHHHHH
Q 038550 341 NVELGAWAAEHLFMLKPQHCGYYILLSNMY--AEAGKWDEASKV 382 (423)
Q Consensus 341 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~ 382 (423)
++++|...++++....|.++.++..+..+. ...+.+++|...
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998887776553 344556666544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=2.9e-08 Score=70.30 Aligned_cols=91 Identities=15% Similarity=0.122 Sum_probs=83.3
Q ss_pred HHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChh
Q 038550 300 MVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWD 377 (423)
Q Consensus 300 l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 377 (423)
-...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++.+.+|.++..|..++.++...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 356788999999999999998 4455 77889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 038550 378 EASKVRELMKSRE 390 (423)
Q Consensus 378 ~A~~~~~~m~~~~ 390 (423)
+|+..+++..+..
T Consensus 89 ~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 89 EAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998754
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.77 E-value=1.7e-08 Score=79.48 Aligned_cols=97 Identities=5% Similarity=-0.146 Sum_probs=78.2
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038550 222 KDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMV 301 (423)
Q Consensus 222 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 301 (423)
|+...+......+.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|...|+++++.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 455666777888888999999999998888764 2367788888888999999999999998888753 33567788888
Q ss_pred HHHHhcCChHHHHHHHhhC
Q 038550 302 DLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 302 ~~~~~~~~~~~a~~~~~~~ 320 (423)
.+|...|++++|+..|+++
T Consensus 80 ~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 8899999999998888876
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.73 E-value=2e-07 Score=77.76 Aligned_cols=155 Identities=8% Similarity=-0.110 Sum_probs=70.6
Q ss_pred HHHHhHhhHHhhhHHHHHHHHhc-----cCcchHHHHHHHHHHHhcCCHHHHHHHhccCCC-----C----ChhhHHHHH
Q 038550 166 SACANLAAIKQGKEIHGVTIRKH-----LHTHLFVANSILDFYTRSGRIDLANKIFDCLPV-----K----DSASWNTLI 231 (423)
Q Consensus 166 ~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~----~~~~~~~li 231 (423)
..|...+++++|...|.++.+.. ......+|..+..+|.+.|++++|...++.... . ...++..+.
T Consensus 45 ~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 124 (290)
T d1qqea_ 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (290)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHH
Confidence 34444455555555555444321 011123444445555555555555555443220 0 122333444
Q ss_pred HHHh-ccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCh------hhHHH
Q 038550 232 LGYG-MLGEVDTAINLFEAMRED----GVGY-DPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTE------MHYAC 299 (423)
Q Consensus 232 ~~~~-~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ 299 (423)
..|. ..|++++|++.+++..+. +..+ -..++..+...+...|++++|...|+++......... ..+..
T Consensus 125 ~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (290)
T d1qqea_ 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (290)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHH
Confidence 4442 346666666666554321 1111 1234555556666666666666666665554211110 11223
Q ss_pred HHHHHHhcCChHHHHHHHhhC
Q 038550 300 MVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 300 l~~~~~~~~~~~~a~~~~~~~ 320 (423)
.+..+...|+++.|...+++.
T Consensus 205 ~~~~~l~~~d~~~A~~~~~~~ 225 (290)
T d1qqea_ 205 KGLCQLAATDAVAAARTLQEG 225 (290)
T ss_dssp HHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHHHHhccHHHHHHHHHHH
Confidence 333445556666666666655
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.73 E-value=2e-08 Score=70.45 Aligned_cols=89 Identities=15% Similarity=0.038 Sum_probs=80.0
Q ss_pred HHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 038550 299 CMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKW 376 (423)
Q Consensus 299 ~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 376 (423)
.+...+.+.|++++|+..|++. ...| ++..|..+..++...|++++|+..++++.+.+|.++.++..++.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 4566788899999999999987 4556 6788999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHH
Q 038550 377 DEASKVRELMK 387 (423)
Q Consensus 377 ~~A~~~~~~m~ 387 (423)
++|.+.+++..
T Consensus 101 ~~A~~~l~~~l 111 (112)
T d1hxia_ 101 NAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998863
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.68 E-value=3.2e-07 Score=76.48 Aligned_cols=125 Identities=10% Similarity=-0.045 Sum_probs=58.4
Q ss_pred HHHHHHHHh-cCCChhhHHHHHHHHHhc----CCCC-chhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcch------
Q 038550 126 YNILIVGYS-QTSDCSESLSLFSEMRLL----GMKH-DVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHL------ 193 (423)
Q Consensus 126 ~~~l~~~~~-~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------ 193 (423)
+..+...|. ..|++++|+..+++..+. +.++ -..++..+...+...|++++|...++++.........
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 333444442 235555555555554321 1111 1224455555666666666666666665553322111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhccCCCCC--------hhhHHHHHHHHhc--cCCHHHHHHHHHHH
Q 038550 194 FVANSILDFYTRSGRIDLANKIFDCLPVKD--------SASWNTLILGYGM--LGEVDTAINLFEAM 250 (423)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~--~g~~~~a~~~~~~m 250 (423)
..+...+..+...|+++.|...+++..+-+ ......++.++-. .+.+++|+..|+.+
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 112233444555666666666666554321 1223444454433 23455666555543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=1.9e-07 Score=72.45 Aligned_cols=120 Identities=13% Similarity=0.047 Sum_probs=75.9
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHH
Q 038550 268 ACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELG 345 (423)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a 345 (423)
.+...|+++.|.+.|+++ .+|+..+|..+..+|...|++++|++.|++. .+.| +...|..+..++.+.|++++|
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHH
Confidence 344556666666655542 2345555555666666666666666666655 3333 455666666666666666666
Q ss_pred HHHHHHHHhcCCCC----------------cchHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 038550 346 AWAAEHLFMLKPQH----------------CGYYILLSNMYAEAGKWDEASKVRELMKSREA 391 (423)
Q Consensus 346 ~~~~~~~~~~~p~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 391 (423)
+..|+++....+.+ ..++..++.++.+.|++++|.+.+++......
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 66666665543322 23466788899999999999999998776544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=1.2e-07 Score=67.15 Aligned_cols=104 Identities=16% Similarity=0.024 Sum_probs=82.3
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC---hHHHHHHHhhC-CCCCCH---hHHHHHHHH
Q 038550 263 IAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGL---MEDAVKLIKNL-PVEPDA---NIWGALLGA 335 (423)
Q Consensus 263 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~-~~~~~~---~~~~~l~~~ 335 (423)
..+++.+...+++++|++.|++....+ +.+..++..+..++.+.++ +++|+.+|+++ ...|++ .++..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456777888899999999999998875 5677888888888877554 45688888886 444533 367778889
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 038550 336 CRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367 (423)
Q Consensus 336 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 367 (423)
|.+.|++++|+..|+++++.+|.+..+.....
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~ 113 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELER 113 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 99999999999999999999999887765554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=1.2e-07 Score=71.35 Aligned_cols=91 Identities=16% Similarity=0.058 Sum_probs=83.2
Q ss_pred HHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChh
Q 038550 300 MVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWD 377 (423)
Q Consensus 300 l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 377 (423)
....|.+.|++++|+..|++. .+.| +...|..+...|...|++++|+..|+++++.+|.+..+|..++.+|...|+++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 356788999999999999988 4455 67889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 038550 378 EASKVRELMKSRE 390 (423)
Q Consensus 378 ~A~~~~~~m~~~~ 390 (423)
+|...+++.....
T Consensus 96 eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 96 AALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcC
Confidence 9999999998754
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=5.9e-07 Score=68.06 Aligned_cols=85 Identities=8% Similarity=-0.044 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038550 295 MHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAE 372 (423)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 372 (423)
.+|+.+..+|.+.|++++|+..+++. .+.| ++..+..+..++...|++++|+..|+++.+++|.++.+...+..+..+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35666788899999999999999887 4556 778899999999999999999999999999999999998888777666
Q ss_pred cCChhHH
Q 038550 373 AGKWDEA 379 (423)
Q Consensus 373 ~g~~~~A 379 (423)
.+...+.
T Consensus 143 ~~~~~~~ 149 (170)
T d1p5qa1 143 IRRQLAR 149 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.44 E-value=5.1e-05 Score=61.74 Aligned_cols=225 Identities=10% Similarity=-0.069 Sum_probs=129.2
Q ss_pred cchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHh----HhhHHhhhHHHHHHHHhccCcchHHHHH
Q 038550 123 EVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACAN----LAAIKQGKEIHGVTIRKHLHTHLFVANS 198 (423)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 198 (423)
+..+..|...+...+++++|++.|++..+.| +...+..|...+.. ..+...+...+......+
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---------- 68 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---------- 68 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc----------
Confidence 3455566666666777777777777776654 23333334444432 234444444444444333
Q ss_pred HHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHh----ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----h
Q 038550 199 ILDFYTRSGRIDLANKIFDCLPVKDSASWNTLILGYG----MLGEVDTAINLFEAMREDGVGYDPVSYIAILTAC----S 270 (423)
Q Consensus 199 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~----~ 270 (423)
+......+...+. ...+.+.|...++...+.|.. .....+...+ .
T Consensus 69 ------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~ 121 (265)
T d1ouva_ 69 ------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKV 121 (265)
T ss_dssp ------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSS
T ss_pred ------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCc
Confidence 2222222222222 235666777777776665432 2222222222 2
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHhhCCCCCCHhHHHHHHHHHHh----cCCh
Q 038550 271 HGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR----AGLMEDAVKLIKNLPVEPDANIWGALLGACRI----YGNV 342 (423)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 342 (423)
.......+...+...... .+...+..|...|.. ..+...+...++......+......|...|.. ..++
T Consensus 122 ~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~ 198 (265)
T d1ouva_ 122 VTRDFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNF 198 (265)
T ss_dssp SCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCH
T ss_pred ccchhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccch
Confidence 234556666666665553 344556666666664 34566666666655323355555556555554 5689
Q ss_pred hHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhcccc
Q 038550 343 ELGAWAAEHLFMLKPQHCGYYILLSNMYAE----AGKWDEASKVRELMKSREAK 392 (423)
Q Consensus 343 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 392 (423)
+.|+..|+++.+.+ ++..+..|+.+|.+ .+++++|.++|++..+.|..
T Consensus 199 ~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 199 KEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 99999999988875 46677888888875 44788999999998887753
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.38 E-value=0.0004 Score=57.80 Aligned_cols=135 Identities=9% Similarity=-0.058 Sum_probs=63.7
Q ss_pred cChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHH
Q 038550 21 KNIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALT 100 (423)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 100 (423)
||..--..+..-|.+.|.++.|..++..+.. |..++..+.+.++++.|.+++... -+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 4444444555666666666666666664432 445556666666666665555432 1444555566
Q ss_pred HHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhH
Q 038550 101 DMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANL 171 (423)
Q Consensus 101 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 171 (423)
..+.+......|.-.-.....+......++..|-..|.+++...+++...... .++...++.++..+++.
T Consensus 77 ~~l~~~~e~~la~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 77 FACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT
T ss_pred HHHHhCcHHHHHHHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHh
Confidence 66665555444322211112233334456666666677777666666654321 34455566666666654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.37 E-value=4.2e-06 Score=63.10 Aligned_cols=94 Identities=10% Similarity=0.003 Sum_probs=75.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 038550 296 HYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEA 373 (423)
Q Consensus 296 ~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 373 (423)
+|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..|+++.+++|.++.+...+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4556778889999999999998887 4444 7778888999999999999999999999999999998888887776666
Q ss_pred CChh-HHHHHHHHHHhc
Q 038550 374 GKWD-EASKVRELMKSR 389 (423)
Q Consensus 374 g~~~-~A~~~~~~m~~~ 389 (423)
+... ...+++.+|.++
T Consensus 146 ~~~~e~~kk~~~~~f~~ 162 (168)
T d1kt1a1 146 KEHNERDRRTYANMFKK 162 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhh
Confidence 5554 355666666543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=5.9e-07 Score=64.44 Aligned_cols=89 Identities=11% Similarity=0.071 Sum_probs=45.9
Q ss_pred HHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcch-------HHHHHHHH
Q 038550 300 MVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGY-------YILLSNMY 370 (423)
Q Consensus 300 l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-------~~~l~~~~ 370 (423)
+...+.+.|++++|+..|++. .+.| +...+..+..+|...|++++|+..++++++.+|.++.. |..++..+
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~ 89 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY 89 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544 2233 34455555555555555555555555555555544432 33344444
Q ss_pred HhcCChhHHHHHHHHHHh
Q 038550 371 AEAGKWDEASKVRELMKS 388 (423)
Q Consensus 371 ~~~g~~~~A~~~~~~m~~ 388 (423)
...+++++|++.+++...
T Consensus 90 ~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 90 FKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 555566666665555443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=3e-06 Score=64.07 Aligned_cols=112 Identities=5% Similarity=-0.120 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHh
Q 038550 260 VSYIAILTACSHGGLVEKGKKYFDEMQADS-VKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338 (423)
Q Consensus 260 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~ 338 (423)
..+......+.+.|++++|...|++.+... ..+.... .-......+ -..+|+.+..+|.+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~---------------~~~~~~~~~----~~~~~~nla~~y~k 74 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN---------------EEAQKAQAL----RLASHLNLAMCHLK 74 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS---------------HHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccch---------------HHHhhhchh----HHHHHHHHHHHHHh
Confidence 345555667788888888888888877651 1111000 000000000 12356778888999
Q ss_pred cCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 339 YGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 339 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
.|++++|+..++.+++.+|.++.++..++.+|...|++++|+..|++..+.+
T Consensus 75 ~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 75 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999998754
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.34 E-value=2.6e-06 Score=64.41 Aligned_cols=80 Identities=6% Similarity=-0.081 Sum_probs=57.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038550 294 EMHYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYA 371 (423)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 371 (423)
...|..+..+|.+.|++++|+..++++ .+.| ++..|..+..++...|++++|+..|+++.+++|.+..+...+..+..
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 156 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345566677777788888888877776 5555 56677777788888888888888888888888887777666665544
Q ss_pred hc
Q 038550 372 EA 373 (423)
Q Consensus 372 ~~ 373 (423)
+.
T Consensus 157 ~l 158 (169)
T d1ihga1 157 KI 158 (169)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=5.7e-07 Score=63.60 Aligned_cols=94 Identities=11% Similarity=-0.010 Sum_probs=78.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcC---ChhHHHHHHHHHHhcCCCC--cchHHHHHHH
Q 038550 297 YACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYG---NVELGAWAAEHLFMLKPQH--CGYYILLSNM 369 (423)
Q Consensus 297 ~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~ 369 (423)
...++..+...+++++|++.|++. ...| ++.++..+..++.+.+ ++++|+.+++++.+.+|.+ ..++..++.+
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 356778888999999999999988 4445 7788888999988755 4567999999999988654 3478899999
Q ss_pred HHhcCChhHHHHHHHHHHhcc
Q 038550 370 YAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 370 ~~~~g~~~~A~~~~~~m~~~~ 390 (423)
|.+.|++++|++.|+++.+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhhHHHHHHHHHHHHhC
Confidence 999999999999999998854
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.30 E-value=4.1e-06 Score=61.99 Aligned_cols=72 Identities=10% Similarity=0.001 Sum_probs=42.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 038550 296 HYACMVDLLGRAGLMEDAVKLIKNL-PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367 (423)
Q Consensus 296 ~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 367 (423)
+|..+..+|.+.|++++|++.++++ .+.| +..+|..+..++...|++++|+..|+++.+++|.+..+...+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~ 142 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE 142 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4444555666666666666666554 3333 4556666666666666666666666666666666655554443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.23 E-value=6.2e-06 Score=57.27 Aligned_cols=87 Identities=9% Similarity=-0.051 Sum_probs=45.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 038550 231 ILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLM 310 (423)
Q Consensus 231 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 310 (423)
...+.+.|++++|+..|++....... +..+|..+..++.+.|++++|+..+++..+.. +.+...+..+..+|...|++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence 34445555555555555555554211 44555555555555555555555555555542 23344555555555555555
Q ss_pred HHHHHHHhh
Q 038550 311 EDAVKLIKN 319 (423)
Q Consensus 311 ~~a~~~~~~ 319 (423)
++|.+.|++
T Consensus 101 ~~A~~~l~~ 109 (112)
T d1hxia_ 101 NAALASLRA 109 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.22 E-value=5.6e-06 Score=62.86 Aligned_cols=119 Identities=12% Similarity=0.039 Sum_probs=86.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCh-HHHHHHHhhCCCCCCHhHHHHHHHHHHhcC
Q 038550 264 AILTACSHGGLVEKGKKYFDEMQAD--SVKPTEMHYACMVDLLGRAGLM-EDAVKLIKNLPVEPDANIWGALLGACRIYG 340 (423)
Q Consensus 264 ~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~ 340 (423)
.........|++++|...|...... |....... .+.+ .....-++. .....+..+...+...|
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~----------~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR----------DFQFVEPFATALVE----DKVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT----------TSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCc----------chHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC
Confidence 3445678889999999999998875 21110000 0000 000111111 12356777889999999
Q ss_pred ChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh-----ccccCCCC
Q 038550 341 NVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKS-----REAKKNPG 396 (423)
Q Consensus 341 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ 396 (423)
++++|+..++++.+.+|.+...|..++.+|.+.|++++|++.|+++.. .|+.|.+.
T Consensus 82 ~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 82 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred CchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 999999999999999999999999999999999999999999999844 57877653
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.20 E-value=0.0011 Score=55.09 Aligned_cols=239 Identities=12% Similarity=0.070 Sum_probs=139.5
Q ss_pred CCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCChHHHHHHhchhcCCcchHHHHHHHHhc
Q 038550 56 PNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDEVSYNILIVGYSQ 135 (423)
Q Consensus 56 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~ 135 (423)
||..-...+...|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+.+... .+..+|..+...+.+
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~-~~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA-NSTRTWKEVCFACVD 81 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH-TCHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc-CCHHHHHHHHHHHHh
Confidence 566666677888999999999999998553 3456778889999999998888322 356688888888888
Q ss_pred CCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHhcCCHHHHHHH
Q 038550 136 TSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTRSGRIDLANKI 215 (423)
Q Consensus 136 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 215 (423)
..+...+ .+.......+......++..|-..|.+++...+++..... -..+...++.++..|++.+ .++..+.
T Consensus 82 ~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl~e~ 154 (336)
T d1b89a_ 82 GKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMREH 154 (336)
T ss_dssp TTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred CcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHHHHH
Confidence 7766443 2223334456666678888999999999999999987643 2455667788888888865 4455555
Q ss_pred hccCCC-C----------ChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 038550 216 FDCLPV-K----------DSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDE 284 (423)
Q Consensus 216 ~~~~~~-~----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 284 (423)
+..... - ....|..++-.|.+.|+++.|..++ .+. .++......++..+.+..+.+...++...
T Consensus 155 l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~ 229 (336)
T d1b89a_ 155 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVELYYRAIQF 229 (336)
T ss_dssp HHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHH
T ss_pred HHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChHHHHHHHHH
Confidence 544321 1 1122445555555556655554432 221 23333344555666666676666666665
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC
Q 038550 285 MQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL 320 (423)
Q Consensus 285 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (423)
..+. .| ...+.++......-+..+..+.+++-
T Consensus 230 yL~~--~p--~~i~~lL~~v~~~~d~~r~V~~~~k~ 261 (336)
T d1b89a_ 230 YLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSKV 261 (336)
T ss_dssp HHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred HHHc--CH--HHHHHHHHHhccCCCHHHHHHHHHhc
Confidence 5543 23 33455555555555555555555543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.20 E-value=0.00018 Score=58.27 Aligned_cols=64 Identities=8% Similarity=-0.092 Sum_probs=39.8
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhc----CCCCccHHHHHHHHHHcC
Q 038550 22 NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACAR----GHFLRPGKEIHARIIRKG 88 (423)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 88 (423)
|+.++..|...+.+.+++++|++.|++..+.| +...+..|...+.. ..+...+...++.....+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~ 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc
Confidence 45566667777777778888888888777665 45555555555543 345555555555555444
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.18 E-value=1.2e-05 Score=59.38 Aligned_cols=114 Identities=8% Similarity=-0.122 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhc
Q 038550 260 VSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIY 339 (423)
Q Consensus 260 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~ 339 (423)
..+..-...+.+.|++.+|...|+++...- +..... .......... .....++..+..+|.+.
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~~~-----------~~~~~~~~~~----~~~~~~~~Nla~~~~~l 80 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEW-----------DDQILLDKKK----NIEISCNLNLATCYNKN 80 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTC-----------CCHHHHHHHH----HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchhhh-----------hhHHHHHhhh----hHHHHHHhhHHHHHHHh
Confidence 345555667778888888888888877641 110000 0000000000 01234677788899999
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 340 GNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 340 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
|++++|+..++++++.+|.+..+|..++.+|...|++++|+..|++..+..
T Consensus 81 ~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 81 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred cccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999988754
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.12 E-value=7.4e-06 Score=61.77 Aligned_cols=112 Identities=8% Similarity=-0.057 Sum_probs=81.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCC-CHhHHHHHHHHHHhc
Q 038550 261 SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEP-DANIWGALLGACRIY 339 (423)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~ 339 (423)
.+......+...|++++|+..|++++... ..........+. ..+.| ....+..+..++.+.
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~------------~~~~~~~~~~~~------~~~~~~~~~~~~nla~~~~~~ 90 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV------------EGSRAAAEDADG------AKLQPVALSCVLNIGACKLKM 90 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------HHHHHHSCHHHH------GGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh------------hhhhhhhhhHHH------HHhChhhHHHHHHHHHHHHhh
Confidence 34455556677778888877777665420 000000111100 01123 445677788899999
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 340 GNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 340 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
|++++|+..++++++++|.++.+|..++.+|...|++++|+..|++..+..
T Consensus 91 ~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~ 141 (169)
T d1ihga1 91 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 141 (169)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999998753
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=5.3e-07 Score=81.26 Aligned_cols=92 Identities=11% Similarity=-0.088 Sum_probs=36.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 038550 296 HYACMVDLLGRAGLMEDAVKLIKNLPVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAG 374 (423)
Q Consensus 296 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 374 (423)
.+..+...+.+.|+.++|...+++.- .+ ...++..+...+...|++++|+..|+++.+..|++...|+.++..+...|
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~ 200 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSC-SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG 200 (497)
T ss_dssp ---------------------CCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcC
Confidence 34444444445555555544443321 11 11234444555555555555555555555555555555555555555555
Q ss_pred ChhHHHHHHHHHHh
Q 038550 375 KWDEASKVRELMKS 388 (423)
Q Consensus 375 ~~~~A~~~~~~m~~ 388 (423)
+..+|+..|.+...
T Consensus 201 ~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 201 DHLTTIFYYCRSIA 214 (497)
T ss_dssp CHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHh
Confidence 55555555555443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.02 E-value=3.2e-05 Score=58.05 Aligned_cols=112 Identities=7% Similarity=-0.090 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHh
Q 038550 260 VSYIAILTACSHGGLVEKGKKYFDEMQAD-SVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRI 338 (423)
Q Consensus 260 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~ 338 (423)
..+......+.+.|++.+|...|++.... ...+... .+. ......+ ...+|..+..+|.+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~--------------~~~-~~~~~~~----~~~~~~Nla~~~~~ 76 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLS--------------EKE-SKASESF----LLAAFLNLAMCYLK 76 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC--------------HHH-HHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccc--------------hhh-hhhcchh----HHHHHHhHHHHHHH
Confidence 44555666677777777777777776543 1111000 000 0000000 13356667788999
Q ss_pred cCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 339 YGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 339 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
.|++++|+..++++++++|.+..++..++.+|...|++++|+..|++..+..
T Consensus 77 l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 77 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred hhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999988643
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.00 E-value=1.2e-05 Score=58.75 Aligned_cols=127 Identities=10% Similarity=0.046 Sum_probs=70.0
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----------CcHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038550 235 GMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHG----------GLVEKGKKYFDEMQADSVKPTEMHYACMVDLL 304 (423)
Q Consensus 235 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (423)
-+.+.+++|...|+...+.. +-+..++..+..+|... +.+++|...|++.++.. |.+..+|..+..+|
T Consensus 8 ~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHH
Confidence 34455666666666666653 22455555555555433 23344555555555432 22344444444444
Q ss_pred HhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 038550 305 GRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRE 384 (423)
Q Consensus 305 ~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 384 (423)
...|++. ++... ..+++++|...|+++.+.+|.+...+..|... ..|.+++.
T Consensus 86 ~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~~ 137 (145)
T d1zu2a1 86 TSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLHA 137 (145)
T ss_dssp HHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHHH
T ss_pred HHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHHHH
Confidence 3332210 11100 11246889999999999999988777766544 35667777
Q ss_pred HHHhccc
Q 038550 385 LMKSREA 391 (423)
Q Consensus 385 ~m~~~~~ 391 (423)
+..+.|+
T Consensus 138 e~~k~~~ 144 (145)
T d1zu2a1 138 EAYKQGL 144 (145)
T ss_dssp HHHHSSS
T ss_pred HHHHHhc
Confidence 7666554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=1.9e-06 Score=77.49 Aligned_cols=218 Identities=7% Similarity=-0.099 Sum_probs=114.3
Q ss_pred HHHHHh----chhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchh-hHHHHHHHHHhHhhHHhhhHHHHHHH
Q 038550 111 LAQNVF----NISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVV-SFMGAISACANLAAIKQGKEIHGVTI 185 (423)
Q Consensus 111 ~a~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~ 185 (423)
+|.+.| +..+....++..+..++...+++++| |+++... .|+-. .++ +....-...+..+.+.++...
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~--~e~~Lw~~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKK--VEQDLWNHAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHT--HHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHh--HHHHHHHHHHHHHHHHHHHhc
Confidence 455555 22334455666677777777777665 6666543 23211 111 111111122344555555555
Q ss_pred HhccCcchHHHHH--HHHHHHhcCCHHHHHHHhccCC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH
Q 038550 186 RKHLHTHLFVANS--ILDFYTRSGRIDLANKIFDCLP---VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPV 260 (423)
Q Consensus 186 ~~~~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 260 (423)
+....++..-... ........+.++.|+..+.... .++...+..+...+.+.|+.+.|...+....... ...
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~ 153 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQH 153 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHH---HHH
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHH
Confidence 4433333222111 1222334566777777776544 3355667777788888888888888777665431 135
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-C-CCCCHhHHHHHHHHHHh
Q 038550 261 SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-P-VEPDANIWGALLGACRI 338 (423)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~-~~~~~~~~~~l~~~~~~ 338 (423)
++..+...+...|++++|...|++..+.. +-+...|+.|...+...|+..+|...|.+. . ..|-+.++..|...+.+
T Consensus 154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 154 CLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 67778888888899999999999988864 456678999999999999999999888876 3 34567778887776654
Q ss_pred c
Q 038550 339 Y 339 (423)
Q Consensus 339 ~ 339 (423)
.
T Consensus 233 ~ 233 (497)
T d1ya0a1 233 A 233 (497)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.89 E-value=6.5e-05 Score=53.34 Aligned_cols=102 Identities=10% Similarity=0.065 Sum_probs=66.5
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchHHHHHHHHHHHh
Q 038550 126 YNILIVGYSQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLFVANSILDFYTR 205 (423)
Q Consensus 126 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 205 (423)
+..+...+.+.|++++|+..|++.++.+ +.+...+..+..++.+.|++++|...++.+++...... ..+..+.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~-~~~~~~a----- 79 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR-EDYRQIA----- 79 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST-TCHHHHH-----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH-HHHHHHH-----
Confidence 4456677788888888888888888764 45667777788888888888888888887776433211 1111122
Q ss_pred cCCHHHHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 038550 206 SGRIDLANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMRED 253 (423)
Q Consensus 206 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 253 (423)
.+|..+...+...+++++|+..|++....
T Consensus 80 -------------------~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 80 -------------------KAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp -------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 23344555566667777777777666553
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.89 E-value=2.4e-05 Score=63.33 Aligned_cols=127 Identities=11% Similarity=-0.047 Sum_probs=82.2
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHH
Q 038550 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPT-EMHYACMVDLLGRAGLMED 312 (423)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 312 (423)
..+.|++++|+..+++..+... -+...+..+...++..|++++|...++...+. .|+ ...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P-~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHH
Confidence 4567888888888888887642 36778888888888889999888888888875 343 3444444444444444444
Q ss_pred HHHHHhhC--CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchH
Q 038550 313 AVKLIKNL--PVEPD-ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYY 363 (423)
Q Consensus 313 a~~~~~~~--~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 363 (423)
+..-.... ...|+ ...+......+...|+.++|...++++.+..|..+..+
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 33322221 11232 22333444566777888888888888888877766543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.79 E-value=6.7e-05 Score=55.41 Aligned_cols=63 Identities=10% Similarity=-0.090 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-----------CcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038550 327 NIWGALLGACRIYGNVELGAWAAEHLFMLKPQ-----------HCGYYILLSNMYAEAGKWDEASKVRELMKSR 389 (423)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 389 (423)
..|+.+..+|...|++++|...++++.+..|. ...++..++.+|...|++++|+..|++..+.
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777788888888888888877764321 1225677889999999999999999998764
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.68 E-value=1.6e-05 Score=64.41 Aligned_cols=129 Identities=12% Similarity=0.047 Sum_probs=89.1
Q ss_pred HhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC-CCCCC-HhHHHHHHHHHHhcCChhHHH
Q 038550 269 CSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNL-PVEPD-ANIWGALLGACRIYGNVELGA 346 (423)
Q Consensus 269 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~ 346 (423)
..+.|++++|...+++.++.. +-+...+..+...|+..|++++|...|+.. ...|+ ...+..+...+...+..+++.
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence 457799999999999999874 667899999999999999999999999988 55674 445555555444443333322
Q ss_pred HHHHHHHhc-CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhccccCCCCCccc
Q 038550 347 WAAEHLFML-KPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAKKNPGCSWV 400 (423)
Q Consensus 347 ~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 400 (423)
.-....... .|+....+...+..+...|++++|.+.+++..+.. |+....|.
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~--p~~~~~~~ 137 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR--QEKGFLAN 137 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCCCEEET
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCCCcccc
Confidence 211111111 23333445556777889999999999999987753 44444333
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=0.00013 Score=48.50 Aligned_cols=70 Identities=11% Similarity=0.002 Sum_probs=49.9
Q ss_pred HHHHHHHhcCChHHHHHHHhhC--------CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHH
Q 038550 299 CMVDLLGRAGLMEDAVKLIKNL--------PVEP-DANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSN 368 (423)
Q Consensus 299 ~l~~~~~~~~~~~~a~~~~~~~--------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 368 (423)
.+...+.+.|++++|...|++. ...+ ...++..|..++.+.|++++|+..++++++.+|.++.++..+..
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~ 88 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKY 88 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 4455555666666666555544 0112 24577888889999999999999999999999999888877643
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.67 E-value=1.7e-05 Score=57.89 Aligned_cols=99 Identities=9% Similarity=0.019 Sum_probs=69.6
Q ss_pred HhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHH
Q 038550 269 CSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKNLPVEPDANIWGALLGACRIYGNVELGAWA 348 (423)
Q Consensus 269 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 348 (423)
|-+.+.+++|...|+...+.. |.+..++..+..+|...+++..+.+ ..+.+++|+..
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e----------------------~~~~~~~Ai~~ 63 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISD----------------------AKQMIQEAITK 63 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHH----------------------HHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhH----------------------HHHHHHHHHHH
Confidence 344556677777777766653 4455566666666655544443333 23446789999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCC-----------hhHHHHHHHHHHhcc
Q 038550 349 AEHLFMLKPQHCGYYILLSNMYAEAGK-----------WDEASKVRELMKSRE 390 (423)
Q Consensus 349 ~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~~~ 390 (423)
++++++++|.++.+|..++.+|...|+ +++|.+.|++..+..
T Consensus 64 ~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~ 116 (145)
T d1zu2a1 64 FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 116 (145)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC
Confidence 999999999999999999999987654 678888888887643
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.62 E-value=0.00099 Score=49.99 Aligned_cols=58 Identities=10% Similarity=-0.004 Sum_probs=35.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhh
Q 038550 261 SYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDAVKLIKN 319 (423)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 319 (423)
.+..+..++...|++++|...++.+.... +-+...|..++.+|.+.|+.++|++.|++
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~ 126 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRR 126 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 34555556666666666666666666553 44555666666666666666666666554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=0.018 Score=50.16 Aligned_cols=120 Identities=10% Similarity=-0.094 Sum_probs=72.1
Q ss_pred HHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHHHHcCCCC-chHHHHHHHHHHHhcC
Q 038550 29 MVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARIIRKGLNF-DLFLTNALTDMYAKCG 107 (423)
Q Consensus 29 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 107 (423)
.+.-..+.|+...+.++...+... | ...|...-..-...++. ...++..-+.+..-.| ........+..+.+.+
T Consensus 12 ~a~~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~-~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~ 86 (450)
T d1qsaa1 12 QIKQAWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQ-PAVTVTNFVRANPTLPPARTLQSRFVNELARRE 86 (450)
T ss_dssp HHHHHHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccC-CHHHHHHHHHHCCCChhHHHHHHHHHHHHHhcc
Confidence 344567888999988888887432 3 33333332222222222 2223333333332222 2223344566778889
Q ss_pred ChHHHHHHhchhcCCcchHHHHHHHHhcCCChhhHHHHHHHHHhcC
Q 038550 108 CLNLAQNVFNISFRDEVSYNILIVGYSQTSDCSESLSLFSEMRLLG 153 (423)
Q Consensus 108 ~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 153 (423)
+++.....+...+.+...-..+..+....|+.+.|...+..+-..|
T Consensus 87 ~w~~~~~~~~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~ 132 (450)
T d1qsaa1 87 DWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (450)
T ss_dssp CHHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred CHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 9988887775555566666677888888999999988888776655
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.39 E-value=0.00086 Score=49.14 Aligned_cols=90 Identities=10% Similarity=-0.005 Sum_probs=54.7
Q ss_pred HhccCcHHHHHHHHHHHHHcC-CCCC----------hhhHHHHHHHHHhcCChHHHHHHHhhC--------CCCCC----
Q 038550 269 CSHGGLVEKGKKYFDEMQADS-VKPT----------EMHYACMVDLLGRAGLMEDAVKLIKNL--------PVEPD---- 325 (423)
Q Consensus 269 ~~~~~~~~~a~~~~~~~~~~~-~~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~~~~~---- 325 (423)
+...|++++|+..|++.++.. -.|+ ...|+.+..+|...|++++|...+++. ...++
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 98 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL 98 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence 444555666666665555431 0011 234555666666666666666655543 11221
Q ss_pred -HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 038550 326 -ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQ 358 (423)
Q Consensus 326 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 358 (423)
...+..+..+|...|++++|+..|+++.++.|.
T Consensus 99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 99 WISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 224666788899999999999999999887543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=97.35 E-value=0.0059 Score=41.22 Aligned_cols=141 Identities=9% Similarity=0.003 Sum_probs=98.3
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 038550 234 YGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGRAGLMEDA 313 (423)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 313 (423)
+.-.|..++..+++.+.... .+..-|+.+|.-....-+-+-..++++.+-+. .|. ..+++....
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHH
Confidence 45568888888888887764 25566777776666666656566666555433 111 123444444
Q ss_pred HHHHhhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcccc
Q 038550 314 VKLIKNLPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGKWDEASKVRELMKSREAK 392 (423)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 392 (423)
...+-.++ .+...++..+..+..+|+-+.-.++++.+.+.+..+|.+...++.+|.+.|...++-+++.+.-++|++
T Consensus 76 v~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 76 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 44444442 233455566788889999999999999988888778899999999999999999999999999998874
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.33 E-value=0.00035 Score=46.26 Aligned_cols=65 Identities=12% Similarity=-0.068 Sum_probs=54.2
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-------cchHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 038550 326 ANIWGALLGACRIYGNVELGAWAAEHLFMLKPQH-------CGYYILLSNMYAEAGKWDEASKVRELMKSRE 390 (423)
Q Consensus 326 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 390 (423)
...+-.+...+.+.|+++.|+..++++.+..|.+ ..++..++.++.+.|++++|+..++++.+..
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 3344467788999999999999999998875433 3568889999999999999999999998754
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.14 E-value=0.34 Score=41.66 Aligned_cols=356 Identities=11% Similarity=-0.050 Sum_probs=181.5
Q ss_pred CcchhHHhhcccCC-c-ChhhHHHHHHHHHhCCChHHHHHHHhhchhCCCCCCchhHHHHHHHhhcCCCCccHHHHHHHH
Q 038550 7 RPAEASYLFHNIAE-K-NIVSWNAMVANFAQNRLELKALQLVREMPIHNEFPNSVTLTNVLPACARGHFLRPGKEIHARI 84 (423)
Q Consensus 7 ~~~~A~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 84 (423)
..++...++++-+. | ....-...+..+.+.++++..+..+.. .+++...-...+.+....|+...|...+..+
T Consensus 54 ~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~l 128 (450)
T d1qsaa1 54 PAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKEL 128 (450)
T ss_dssp CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44555555555544 2 111223345566677777665544321 1223333334445555556655555555444
Q ss_pred HHcCC-----------------CCchHHHHHHHHHHHhcCChHHHHHHhchhcCCc-chHHHHHHHHhcCCChhhHHHHH
Q 038550 85 IRKGL-----------------NFDLFLTNALTDMYAKCGCLNLAQNVFNISFRDE-VSYNILIVGYSQTSDCSESLSLF 146 (423)
Q Consensus 85 ~~~~~-----------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~ 146 (423)
-..|. ..+...+-.-+......|+...|..+....+++. ......+..... ...+....
T Consensus 129 W~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~ 205 (450)
T d1qsaa1 129 WLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFA 205 (450)
T ss_dssp HSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHH
T ss_pred HhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHH
Confidence 43331 2233333333444445556665655553322222 222333333221 22222221
Q ss_pred HHHHhcCCCCchhhHHHHHHHHHh--HhhHHhhhHHHHHHHHhccCcchHHH---HHHHHHHHhcCCHHHHHHHhccCC-
Q 038550 147 SEMRLLGMKHDVVSFMGAISACAN--LAAIKQGKEIHGVTIRKHLHTHLFVA---NSILDFYTRSGRIDLANKIFDCLP- 220 (423)
Q Consensus 147 ~~m~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~- 220 (423)
.. ..++......+..++.+ ..+.+.+..++............... ..+.......+..+.+...+....
T Consensus 206 ---~~--~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 280 (450)
T d1qsaa1 206 ---RT--TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM 280 (450)
T ss_dssp ---HH--SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH
T ss_pred ---hc--CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcc
Confidence 11 12333343344444443 35677777777776654332222111 112222233455566666554433
Q ss_pred -CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHH
Q 038550 221 -VKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYAC 299 (423)
Q Consensus 221 -~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 299 (423)
..+.....-.+......+++..+...+..|... ..-...-.--+..++...|+.+.|...|..+.. .++ .|..
T Consensus 281 ~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--fYG~ 354 (450)
T d1qsaa1 281 RSQSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPM 354 (450)
T ss_dssp TCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHH
T ss_pred cccchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--hHHH
Confidence 223443344455556678898888888877543 222345556677888899999999999988764 233 3433
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCCHh-H---HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 038550 300 MVDLLGRAGLMEDAVKLIKNLPVEPDAN-I---WGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLSNMYAEAGK 375 (423)
Q Consensus 300 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 375 (423)
|.. .+.|..-.. . .......+... . -..-+..+...|....|...+..+.... ++.-...++....+.|.
T Consensus 355 LAa--~~Lg~~~~~-~-~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~ 428 (450)
T d1qsaa1 355 VAA--QRIGEEYEL-K-IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQW 428 (450)
T ss_dssp HHH--HHTTCCCCC-C-CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTC
T ss_pred HHH--HHcCCCCCC-C-cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCC
Confidence 322 223321000 0 00011111110 0 1123456778899999999998887543 45567778888899999
Q ss_pred hhHHHHHHHHHH
Q 038550 376 WDEASKVRELMK 387 (423)
Q Consensus 376 ~~~A~~~~~~m~ 387 (423)
++.|+....+..
T Consensus 429 ~~~aI~a~~~~~ 440 (450)
T d1qsaa1 429 WDLSVQATIAGK 440 (450)
T ss_dssp HHHHHHHHHHTT
T ss_pred hhHHHHHHHHHH
Confidence 999998877654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.08 E-value=0.036 Score=38.70 Aligned_cols=50 Identities=12% Similarity=-0.070 Sum_probs=31.7
Q ss_pred CChhHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhccc
Q 038550 340 GNVELGAWAAEHLFMLKPQHCGYYILLSNMYAE----AGKWDEASKVRELMKSREA 391 (423)
Q Consensus 340 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 391 (423)
.+.++|.+.|++..+.+ ++.....|+..|.. ..+.++|.+++++..+.|.
T Consensus 73 ~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 45667777777766654 34455566666655 3567777777777766654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.64 E-value=0.12 Score=35.77 Aligned_cols=111 Identities=11% Similarity=-0.038 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHH
Q 038550 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVDLLGR----AGLMEDAV 314 (423)
Q Consensus 239 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 314 (423)
|+++|.++|++..+.|.. .....+. .....+.++|..++++..+.| +...+..|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 567888888887776632 2222332 344567788888888887766 33444455555553 45678888
Q ss_pred HHHhhCCCCCCHhHHHHHHHHHHh----cCChhHHHHHHHHHHhcCC
Q 038550 315 KLIKNLPVEPDANIWGALLGACRI----YGNVELGAWAAEHLFMLKP 357 (423)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 357 (423)
++|++.-..-++.....|...|.. ..+.++|...++++.+.+.
T Consensus 80 ~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 80 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 888877222345555555555554 4578888888888877664
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.98 E-value=0.06 Score=36.52 Aligned_cols=72 Identities=13% Similarity=-0.008 Sum_probs=43.7
Q ss_pred CChhhHHHHHHHHHhcC---ChHHHHHHHhhC-CCCC-CH-hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchH
Q 038550 292 PTEMHYACMVDLLGRAG---LMEDAVKLIKNL-PVEP-DA-NIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYY 363 (423)
Q Consensus 292 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~-~~~~-~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 363 (423)
|+..+--....++++.. +.++++.+|+++ ...| +. ..+-.|.-+|.+.|++++|...++.+++.+|.+..+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~ 110 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 110 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence 44444444555555543 345666777666 2233 32 3455566677777778888877777777777775543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.73 E-value=0.34 Score=32.55 Aligned_cols=137 Identities=10% Similarity=-0.042 Sum_probs=79.5
Q ss_pred hcCCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhHhhHHhhhHHHHHHHHhccCcchH---HHHHHHHHHHhcCCHH
Q 038550 134 SQTSDCSESLSLFSEMRLLGMKHDVVSFMGAISACANLAAIKQGKEIHGVTIRKHLHTHLF---VANSILDFYTRSGRID 210 (423)
Q Consensus 134 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~ 210 (423)
.-.|..++..+++.+.... .+..-|+-++.-....-+-+...++++.+-+ -.|.. -...++.++...+.
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~---~FDls~C~Nlk~vv~C~~~~n~-- 84 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDLDKCQNLKSVVECGVINNT-- 84 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCGGGCSCTHHHHHHHHHTTC--
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhh---hcCchhhhcHHHHHHHHHHhcc--
Confidence 4456667777777766652 2334444444444433344444444443322 11111 01223333333321
Q ss_pred HHHHHhccCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 038550 211 LANKIFDCLPVKDSASWNTLILGYGMLGEVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSV 290 (423)
Q Consensus 211 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 290 (423)
+...++..+..+...|+-++-.++++.+.+. -+|++.....+..+|-+.|...++-+++.++-+.|+
T Consensus 85 ------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 85 ------------LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp ------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 3344555667777888888888888886664 366777888888888888888888888888888775
Q ss_pred C
Q 038550 291 K 291 (423)
Q Consensus 291 ~ 291 (423)
+
T Consensus 152 K 152 (161)
T d1wy6a1 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.64 E-value=0.39 Score=32.40 Aligned_cols=47 Identities=11% Similarity=0.098 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHhcCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038550 342 VELGAWAAEHLFMLKPQHC-GYYILLSNMYAEAGKWDEASKVRELMKS 388 (423)
Q Consensus 342 ~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 388 (423)
.++++.+++.+.+.+|.+. ..+..|+.+|.+.|++++|.+.++++.+
T Consensus 54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3455555555555554432 3444555555555555555555555544
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.79 E-value=1.7 Score=27.44 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=36.6
Q ss_pred CCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcchHHHHH
Q 038550 320 LPVEPDANIWGALLGACRIYGNVELGAWAAEHLFMLKPQHCGYYILLS 367 (423)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 367 (423)
+...|++.+..+.+++|.+.+|+..|.++++-+...-..+...|.-++
T Consensus 35 ~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yil 82 (105)
T d1v54e_ 35 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 82 (105)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 367788889999999999999999999998888766544445555543
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| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.08 E-value=2 Score=27.12 Aligned_cols=63 Identities=11% Similarity=0.128 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038550 239 EVDTAINLFEAMREDGVGYDPVSYIAILTACSHGGLVEKGKKYFDEMQADSVKPTEMHYACMVD 302 (423)
Q Consensus 239 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 302 (423)
+.=++.+-+..+....+.|++....+.+.+|.+.+++..|.++++-.+.+ ..++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHH
Confidence 44456667777777788899999999999999999999999999888876 2334556766654
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