Citrus Sinensis ID: 038558

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
MYHHPSSSSSSQQNPMGPTTAAGVGGSGGLTRYVSAPGSLLRTAVDSIIGSSSPSPSPSQPSIVSSSHSHQHHHYFAGGSTTTAGGDSSPVSSFTTTESTCKVNSSNAPGNNTKSGLQRSYGLNEIPQTRAASSSLLRQRSSPAGFLSHFASETVGFSVTRETGNYNSQGRSSGGLGVSRLKSQLSFTGQDSLSQISEESENGIDGVSSGSGRQNATHSYSTASFGMDSWENGTSIVFSAPPSKRTKTLDGDIFNCLNALDSQFTMPQTSLEMATVDNLLNIPEDSVPCKIRAKRGCATHPRSIAERERRTRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVENLHKDLEHCTCGCKPTS
ccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
ccccccccccccccccccccccccccccccEEcccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccHHHHccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccHHHHHHHHHHcccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
myhhpssssssqqnpmgpttaagvggsggltryvsapgslLRTAVDSiigssspspspsqpsivssshshqhhhyfaggstttaggdsspvssftttestckvnssnapgnntksglqrsyglneipqtraASSSLlrqrsspagflshfasetvgfsvtretgnynsqgrssgglgvsrlksqlsftgqdSLSQISeesengidgvssgsgrqnathsystasfgmdswengtsivfsappskrtktldgdiFNCLnaldsqftmpqtsleMATVDnllnipedsvpckirakrgcathprsiAERERRTRISRKLKKLQdlvpnmdkqtsysDMLDLAVQHIKGLQNQVENLHKDlehctcgckpts
myhhpssssssqqnpMGPTTAAGVGGSGGLTRYVSAPGSLLRTAVDSIIGSSSPSPSPSQPSIVSSSHSHQHHHYFAGGSTTTAGGDSSPVSSFTTTESTckvnssnapgnntkSGLQRSYGLNEIPQTRAASSSLLRQRSSPAGFLSHFASETVGFSVTRETGnynsqgrssgglgVSRLKSQLSFTGQDSLSQISEESENGIdgvssgsgrqnATHSYSTASFGMDSWENGTSIVFSAPPSKRTKTLDGDIFNCLNALDSQFTMPQTSLEMATVDNLLNIPEDsvpckirakrgcathprsiaererrtrisrklkklqdlvpnmdKQTSYSDMLDLAVQHIKGLQNQVENLHKDLehctcgckpts
MYHHPssssssQQNPMGPTTAAGVGGSGGLTRYVSAPGSLLRTAVDsiigssspspspsqpsivssshshqhhhYFaggstttaggdssPVSSFTTTESTCKVNSSNAPGNNTKSGLQRSYGLNEIPQTraasssllrqrssPAGFLSHFASETVGFSVTRETGNYNsqgrssgglgvsrlKSQLSFTGQDSLSQISEESENGIDGVSSGSGRQNATHSYSTASFGMDSWENGTSIVFSAPPSKRTKTLDGDIFNCLNALDSQFTMPQTSLEMATVDNLLNIPEDSVPCKIRAKRGCATHPRSIAERERRTRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVENLHKDLEHCTCGCKPTS
********************************Y**********************************************************************************************************************************************************************************************************IVF*********TLDGDIFNCLNALDSQFTMPQTSLEMATVDNLLNIPEDSVPCKIRAKR***************************************DMLDLAVQHIKGLQNQVENLHKDLEHCTCGC****
***********************************APGSLLRTA****************************************************************************************************************************************************************************************************************************************************************************ISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVEN*********C******
*********************AGVGGSGGLTRYVSAPGSLLRTAVDSI************************HHYFAGGST****************************GNNTKSGLQRSYGLNEIPQTRAASSSLLRQRSSPAGFLSHFASETVGFSVTRETGNYNSQGRSSGGLGVSRLKSQLSFTGQDSLS************************SYSTASFGMDSWENGTSIVFSAPPSKRTKTLDGDIFNCLNALDSQFTMPQTSLEMATVDNLLNIPEDSVPCKIRAKRGCATHPRSIAERERRTRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVENLHKDLEHCTCGCKPTS
*******************************R*VSAPGSLLRTAVDSIIG****************************************************************************************QRSSPAGFLSHFASETVGFSVTR****************************************************************************************************************ATVDNLLNIPEDSVPCKIRAKRGCATHPRSIAERERRTRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVENLHKDLEHCTC******
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MYHHPSSSSSSQQNPMGPTTAAGVGGSGGLTRYVSAPGSLLRTAVDSIIGSSSPSPSPSQPSIVSSSHSHQHHHYFAGGSTTTAGGDSSPVSSFTTTESTCKVNSSNAPGNNTKSGLQRSYGLNEIPQTRAASSSLLRQRSSPAGFLSHFASETVGFSVTRETGNYNSQGRSSGGLGVSRLKSQLSFTGQDSLSQISEESENGIDGVSSGSGRQNATHSYSTASFGMDSWENGTSIVFSAPPSKRTKTLDGDIFNCLNALDSQFTMPQTSLEMATVDNLLNIPEDSVPCKIRAKRGCATHPRSIAERERRTRISRKLKKLQDLVPNMDKQTSYSDMxxxxxxxxxxxxxxxxxxxxxLEHCTCGCKPTS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query369 2.2.26 [Sep-21-2011]
Q8H102362 Transcription factor bHLH yes no 0.840 0.856 0.498 5e-79
Q9ZW81297 Transcription factor bHLH no no 0.536 0.666 0.534 9e-49
Q66GR3359 Transcription factor bHLH no no 0.617 0.635 0.387 8e-37
Q9C690379 Transcription factor bHLH no no 0.834 0.812 0.334 6e-31
Q9C8P8259 Transcription factor bHLH no no 0.382 0.544 0.434 6e-28
Q9M0R0262 Transcription factor bHLH no no 0.233 0.328 0.616 3e-27
Q9ZUG9 350 Transcription factor bHLH no no 0.173 0.182 0.553 6e-12
Q8S3D5 310 Transcription factor bHLH no no 0.173 0.206 0.538 1e-11
Q9LSQ3 297 Transcription factor bHLH no no 0.173 0.215 0.507 2e-11
A4D998223 Transcription factor bHLH no no 0.200 0.331 0.473 4e-11
>sp|Q8H102|BH128_ARATH Transcription factor bHLH128 OS=Arabidopsis thaliana GN=BHLH128 PE=1 SV=1 Back     alignment and function desciption
 Score =  295 bits (754), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 188/377 (49%), Positives = 233/377 (61%), Gaps = 67/377 (17%)

Query: 26  GSGGLTRYVSAPGSLLRTAVDSIIGSSSPSP------SPSQPSIVSSSHSHQHHHYFAGG 79
           G GGL RY SAPGS L + VD +IG  S +        PS  + +              G
Sbjct: 19  GGGGLIRYGSAPGSFLNSVVDEVIGGGSSNARDFTGYQPSSDNFI--------------G 64

Query: 80  STTTAGGDSSPVSSFTTTESTCKVNSSN----------APGNNTKSGLQRSYG-LNEIPQ 128
           +  T   DSS + S +TT   C VN+S+             +N    L RSYG  NEI Q
Sbjct: 65  NFFTGAADSSSLRSDSTT---CGVNNSSDGQKQLGNNNNNNSNKDIFLDRSYGGFNEISQ 121

Query: 129 TRAASS----------SLLRQRSSPAGFLSHFASETVGFSVTRETGNYNSQGRSSGGLGV 178
              ++           SL RQRSSPA F ++ AS+   FS+ + T +Y+ QG S+GG G 
Sbjct: 122 QHKSNDIGGGNSSGSYSLARQRSSPADFFTYLASDKNNFSLNQPTSDYSPQGGSNGGRGH 181

Query: 179 SRLKSQLSFTGQDSLSQISEESENGIDGVSSGSGRQNATHSYSTASFGM---DSWENGT- 234
           SRLKSQLSFT  DSL++I+E +E     V  GSG     HS+S ASFG    DSW++G+ 
Sbjct: 182 SRLKSQLSFTNHDSLARINEVNETP---VHDGSG-----HSFSAASFGAATTDSWDDGSG 233

Query: 235 SIVFSAP-PSKRTKTLDGDIFNCLNALDSQFTMPQTSLEMATVDNLLNIPEDSVPCKIRA 293
           SI F+   PSKR+K +D  +F       SQ+++P +   M  +DN + +PEDSVPCKIRA
Sbjct: 234 SIGFTVTRPSKRSKDMDSGLF-------SQYSLP-SDTSMNYMDNFMQLPEDSVPCKIRA 285

Query: 294 KRGCATHPRSIAERERRTRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVEN 353
           KRGCATHPRSIAERERRTRIS KLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQ+Q++N
Sbjct: 286 KRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQHQLQN 345

Query: 354 LHKDLEHCTCGC--KPT 368
           L KD E+CTCGC  KP+
Sbjct: 346 LKKDQENCTCGCSEKPS 362

Arabidopsis thaliana (taxid: 3702)
>sp|Q9ZW81|BH129_ARATH Transcription factor bHLH129 OS=Arabidopsis thaliana GN=BHLH129 PE=2 SV=2 Back     alignment and function description
>sp|Q66GR3|BH130_ARATH Transcription factor bHLH130 OS=Arabidopsis thaliana GN=BHLH130 PE=1 SV=1 Back     alignment and function description
>sp|Q9C690|BH122_ARATH Transcription factor bHLH122 OS=Arabidopsis thaliana GN=BHLH122 PE=1 SV=1 Back     alignment and function description
>sp|Q9C8P8|BH080_ARATH Transcription factor bHLH80 OS=Arabidopsis thaliana GN=BHLH80 PE=1 SV=1 Back     alignment and function description
>sp|Q9M0R0|BH081_ARATH Transcription factor bHLH81 OS=Arabidopsis thaliana GN=BHLH81 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZUG9|BH066_ARATH Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=1 Back     alignment and function description
>sp|Q8S3D5|BH069_ARATH Transcription factor bHLH69 OS=Arabidopsis thaliana GN=BHLH69 PE=2 SV=2 Back     alignment and function description
>sp|Q9LSQ3|BH082_ARATH Transcription factor bHLH82 OS=Arabidopsis thaliana GN=BHLH82 PE=2 SV=1 Back     alignment and function description
>sp|A4D998|BH075_ARATH Transcription factor bHLH75 OS=Arabidopsis thaliana GN=BHLH75 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query369
255572912377 DNA binding protein, putative [Ricinus c 0.905 0.885 0.646 1e-119
224131550342 predicted protein [Populus trichocarpa] 0.853 0.921 0.643 1e-113
359478054357 PREDICTED: transcription factor bHLH128 0.848 0.876 0.580 1e-108
297745167410 unnamed protein product [Vitis vinifera] 0.837 0.753 0.569 1e-104
449468734370 PREDICTED: transcription factor bHLH128- 0.834 0.832 0.524 5e-81
21554238362 Contains similarity to bHLH transcriptio 0.840 0.856 0.498 3e-77
18390573362 transcription factor bHLH128 [Arabidopsi 0.840 0.856 0.498 3e-77
312282787353 unnamed protein product [Thellungiella h 0.826 0.864 0.522 3e-77
449521074356 PREDICTED: transcription factor bHLH128- 0.802 0.831 0.522 3e-75
297843372357 basic helix-loop-helix family protein [A 0.853 0.882 0.493 1e-74
>gi|255572912|ref|XP_002527387.1| DNA binding protein, putative [Ricinus communis] gi|223533239|gb|EEF34994.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/354 (64%), Positives = 270/354 (76%), Gaps = 20/354 (5%)

Query: 18  PTTAAGVGGSGGLTRYVSAPGSLLRTAVDSIIGSSSPSPSPSQ--PSIVSSSHSHQHHHY 75
           PT+ A   GSG LTR+ SAPGS L  AVDS+IG+++     S    +  ++++++ HH Y
Sbjct: 42  PTSIAPASGSG-LTRFGSAPGSFLTRAVDSVIGTTTSGRDFSALVNNNSNNNNNNSHHQY 100

Query: 76  FAGGSTTTAGGDSSPVSSFTTTESTCKVNSSNAPGNNTKSGLQRSYGLNEIPQTRAASSS 135
           F+ G       DSS +    TTESTCKVNSSN      KSGLQRSYG NEI      + S
Sbjct: 101 FSAG-------DSSSL----TTESTCKVNSSNDLRAPAKSGLQRSYGFNEI------NGS 143

Query: 136 LLRQRSSPAGFLSHFASETVGFSVTRETGNYNSQGRSSGGLGVSRLKSQLSFTGQDSLSQ 195
           LLRQ+SSPAGFLSH  +   GFS+T  TG YNS    +GG  VSRLKSQLSFT QDSLSQ
Sbjct: 144 LLRQKSSPAGFLSHHLANENGFSITPGTGGYNSSNGPNGGHTVSRLKSQLSFTRQDSLSQ 203

Query: 196 ISEESENGIDGVSSGSGRQNATHSYSTASFGMDSWENGTSIVFSAPPSKRTKTLDGDIFN 255
           ISE SE+ ++G++S +G  N+ HSYST  FGM SW+   SIVFS PPSKR K +DGD+FN
Sbjct: 204 ISEVSEDIVEGINSNTGHHNSPHSYSTTGFGMGSWDGTNSIVFSGPPSKRMKNIDGDLFN 263

Query: 256 CLNALDSQFTMPQTSLEMATVDNLLNIPEDSVPCKIRAKRGCATHPRSIAERERRTRISR 315
           CLN L++QF++PQTSLEMATV+ LLNIPEDSVPCKIRAKRGCATHPRSIAERERRTRIS 
Sbjct: 264 CLNGLETQFSLPQTSLEMATVEKLLNIPEDSVPCKIRAKRGCATHPRSIAERERRTRISG 323

Query: 316 KLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVENLHKDLEHCTCGCKPTS 369
           +LKKLQDLVPNMDKQTSY+DMLDLAVQHIKGLQ +V+ LHK+LE+CTCGCKPTS
Sbjct: 324 RLKKLQDLVPNMDKQTSYADMLDLAVQHIKGLQGEVQKLHKELENCTCGCKPTS 377

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224131550|ref|XP_002321112.1| predicted protein [Populus trichocarpa] gi|222861885|gb|EEE99427.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359478054|ref|XP_002268535.2| PREDICTED: transcription factor bHLH128 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297745167|emb|CBI39159.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449468734|ref|XP_004152076.1| PREDICTED: transcription factor bHLH128-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|21554238|gb|AAM63313.1| Contains similarity to bHLH transcription factor GBOF-1 from Tulipa gesneriana gb|AF185269 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18390573|ref|NP_563749.1| transcription factor bHLH128 [Arabidopsis thaliana] gi|75299737|sp|Q8H102.1|BH128_ARATH RecName: Full=Transcription factor bHLH128; AltName: Full=Basic helix-loop-helix protein 128; Short=AtbHLH128; Short=bHLH 128; AltName: Full=Transcription factor EN 74; AltName: Full=bHLH transcription factor bHLH128 gi|24030386|gb|AAN41354.1| unknown protein [Arabidopsis thaliana] gi|332189775|gb|AEE27896.1| transcription factor bHLH128 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|312282787|dbj|BAJ34259.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|449521074|ref|XP_004167556.1| PREDICTED: transcription factor bHLH128-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297843372|ref|XP_002889567.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp. lyrata] gi|297335409|gb|EFH65826.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query369
TAIR|locus:505006103362 AT1G05805 "AT1G05805" [Arabido 0.880 0.897 0.439 4.8e-62
UNIPROTKB|Q7XT55218 OSJNBa0084K20.3 "OSJNBa0076N16 0.501 0.848 0.519 7.3e-43
TAIR|locus:2059979359 FBH4 "AT2G42280" [Arabidopsis 0.376 0.387 0.480 3e-33
UNIPROTKB|Q8S490150 rau1 "Transcription factor RAU 0.287 0.706 0.635 2.3e-32
TAIR|locus:2026037379 FBH3 "AT1G51140" [Arabidopsis 0.574 0.559 0.378 8.8e-32
TAIR|locus:2008693259 FBH1 "AT1G35460" [Arabidopsis 0.403 0.575 0.427 2e-30
TAIR|locus:2141573262 FBH2 "AT4G09180" [Arabidopsis 0.373 0.526 0.455 7.6e-29
UNIPROTKB|Q6K8J6153 OJ1669_F01.28 "Putative unchar 0.308 0.745 0.458 3.2e-14
TAIR|locus:2047555 350 LRL1 "AT2G24260" [Arabidopsis 0.322 0.34 0.414 7.3e-13
TAIR|locus:2032990223 CES "AT1G25330" [Arabidopsis t 0.200 0.331 0.473 1.7e-10
TAIR|locus:505006103 AT1G05805 "AT1G05805" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 159/362 (43%), Positives = 195/362 (53%)

Query:    26 GSGGLTRYVSAPGSLLRTAVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXYFXXXXXXXXX 85
             G GGL RY SAPGS L + VD                            +F         
Sbjct:    19 GGGGLIRYGSAPGSFLNSVVDEVIGGGSSNARDFTGYQPSSDNFIGN--FFTGAADSSSL 76

Query:    86 XXXXPVSSFTTTESTCKVNSSNAPGNNTKS-GLQRSYG-LNEIPQ----------TXXXX 133
                        +    K   +N   N+ K   L RSYG  NEI Q               
Sbjct:    77 RSDSTTCGVNNSSDGQKQLGNNNNNNSNKDIFLDRSYGGFNEISQQHKSNDIGGGNSSGS 136

Query:   134 XXXXXXXXXPAGFLSHFASETVGFSVTRETGNYNXXXXXXXXXXXXXXKSQLSFTGQDSL 193
                      PA F ++ AS+   FS+ + T +Y+              KSQLSFT  DSL
Sbjct:   137 YSLARQRSSPADFFTYLASDKNNFSLNQPTSDYSPQGGSNGGRGHSRLKSQLSFTNHDSL 196

Query:   194 SQISEESENGIDGVSSGSGRQNATHSYSTASFGM---DSWENGT-SIVFSAP-PSKRTKT 248
             ++I+E +E     V  GSG     HS+S ASFG    DSW++G+ SI F+   PSKR+K 
Sbjct:   197 ARINEVNETP---VHDGSG-----HSFSAASFGAATTDSWDDGSGSIGFTVTRPSKRSKD 248

Query:   249 LDGDIFNCLNALDSQFTMPQTSLEMATVDNLLNIPEDSVPCKIRAKRGCATHPRSIAERE 308
             +D  +F       SQ+++P  +  M  +DN + +PEDSVPCKIRAKRGCATHPRSIAERE
Sbjct:   249 MDSGLF-------SQYSLPSDT-SMNYMDNFMQLPEDSVPCKIRAKRGCATHPRSIAERE 300

Query:   309 RRTRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVENLHKDLEHCTCGC--K 366
             RRTRIS KLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQ+Q++NL KD E+CTCGC  K
Sbjct:   301 RRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQHQLQNLKKDQENCTCGCSEK 360

Query:   367 PT 368
             P+
Sbjct:   361 PS 362
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0005829 "cytosol" evidence=IDA
UNIPROTKB|Q7XT55 OSJNBa0084K20.3 "OSJNBa0076N16.1 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2059979 FBH4 "AT2G42280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8S490 rau1 "Transcription factor RAU1" [Oryza sativa (taxid:4530)] Back     alignment and assigned GO terms
TAIR|locus:2026037 FBH3 "AT1G51140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008693 FBH1 "AT1G35460" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141573 FBH2 "AT4G09180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6K8J6 OJ1669_F01.28 "Putative uncharacterized protein OJ1669_F01.28" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2047555 LRL1 "AT2G24260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032990 CES "AT1G25330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8H102BH128_ARATHNo assigned EC number0.49860.84010.8563yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00005670001
SubName- Full=Chromosome chr5 scaffold_156, whole genome shotgun sequence; (353 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query369
smart0035353 smart00353, HLH, helix loop helix domain 4e-11
cd0008360 cd00083, HLH, Helix-loop-helix domain, found in sp 9e-11
pfam0001052 pfam00010, HLH, Helix-loop-helix DNA-binding domai 5e-08
>gnl|CDD|197674 smart00353, HLH, helix loop helix domain Back     alignment and domain information 
 Score = 57.2 bits (139), Expect = 4e-11
 Identities = 17/52 (32%), Positives = 34/52 (65%), Gaps = 2/52 (3%)

Query: 303 SIAERERRTRISRKLKKLQDLVP--NMDKQTSYSDMLDLAVQHIKGLQNQVE 352
           +  ER RR +I+    +L+ L+P    +K+ S +++L LA+++IK LQ +++
Sbjct: 1   NARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEELQ 52

Length = 53
>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 369
cd0008360 HLH Helix-loop-helix domain, found in specific DNA 99.37
smart0035353 HLH helix loop helix domain. 99.34
PF0001055 HLH: Helix-loop-helix DNA-binding domain only nucl 99.33
KOG1318 411 consensus Helix loop helix transcription factor EB 99.17
KOG1319229 consensus bHLHZip transcription factor BIGMAX [Tra 98.81
KOG4304 250 consensus Transcriptional repressors of the hairy/ 98.65
KOG3960284 consensus Myogenic helix-loop-helix transcription 98.54
KOG3561 803 consensus Aryl-hydrocarbon receptor nuclear transl 98.31
KOG2588 953 consensus Predicted DNA-binding protein [Transcrip 98.3
KOG2483232 consensus Upstream transcription factor 2/L-myc-2 98.18
PLN0321793 transcription factor ATBS1; Provisional 97.64
KOG4029228 consensus Transcription factor HAND2/Transcription 97.56
KOG0561 373 consensus bHLH transcription factor [Transcription 97.14
KOG3910632 consensus Helix loop helix transcription factor [T 94.84
KOG4447173 consensus Transcription factor TWIST [Transcriptio 91.59
KOG3558 768 consensus Hypoxia-inducible factor 1/Neuronal PAS 89.14
KOG3559 598 consensus Transcriptional regulator SIM1 [Transcri 85.27
KOG4395285 consensus Transcription factor Atonal, contains HT 83.84
KOG3560 712 consensus Aryl-hydrocarbon receptor [Transcription 83.05
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information 
Probab=99.37  E-value=6.2e-13  Score=98.06  Aligned_cols=53  Identities=34%  Similarity=0.574  Sum_probs=48.6

Q ss_pred             CCccHHHHHHHHHHHHHHHHHhhccCCC--CCCCCHhhHHHHHHHHHHHHHHHHH
Q 038558          300 HPRSIAERERRTRISRKLKKLQDLVPNM--DKQTSYSDMLDLAVQHIKGLQNQVE  352 (369)
Q Consensus       300 ~~HsiaERrRReRINer~~~Lr~LVP~~--~K~tdKAsILdeAI~YIK~LQ~qVk  352 (369)
                      ..|+..||+||++||+.|..|+.|||..  ..+.+|+.||+.||+||+.|+.+++
T Consensus         6 ~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~   60 (60)
T cd00083           6 EAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ   60 (60)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            4699999999999999999999999999  3557999999999999999998863

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
>smart00353 HLH helix loop helix domain Back     alignment and domain information
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt) Back     alignment and domain information
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription] Back     alignment and domain information
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription] Back     alignment and domain information
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription] Back     alignment and domain information
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription] Back     alignment and domain information
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription] Back     alignment and domain information
>KOG2588 consensus Predicted DNA-binding protein [Transcription] Back     alignment and domain information
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription] Back     alignment and domain information
>PLN03217 transcription factor ATBS1; Provisional Back     alignment and domain information
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription] Back     alignment and domain information
>KOG0561 consensus bHLH transcription factor [Transcription] Back     alignment and domain information
>KOG3910 consensus Helix loop helix transcription factor [Transcription] Back     alignment and domain information
>KOG4447 consensus Transcription factor TWIST [Transcription] Back     alignment and domain information
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription] Back     alignment and domain information
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription] Back     alignment and domain information
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription] Back     alignment and domain information
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query369
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 3e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 3e-08
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 8e-08
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 3e-07
1hlo_A80 Protein (transcription factor MAX); transcriptiona 5e-07
1a0a_A63 BHLH, protein (phosphate system positive regulator 2e-05
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 9e-05
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82 Back     alignment and structure
 Score = 58.2 bits (141), Expect = 3e-11
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 292 RAKRGCATHPRSIAERERRTRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQV 351
             KR    H  +  E+  R+ I+ K+ +L+DLV   + + + S +L  A+ +I+ LQ+  
Sbjct: 4   GEKR--TAH--NAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSN 59

Query: 352 ENLHKDLEH 360
           + L ++   
Sbjct: 60  QKLKQENLS 68
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83 Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88 Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Length = 63 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query369
4ati_A118 MITF, microphthalmia-associated transcription fact 99.66
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 99.65
1a0a_A63 BHLH, protein (phosphate system positive regulator 99.56
4h10_B71 Circadian locomoter output cycles protein kaput; B 99.53
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 99.51
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 99.48
1hlo_A80 Protein (transcription factor MAX); transcriptiona 99.48
4h10_A73 ARYL hydrocarbon receptor nuclear translocator-LI 99.46
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 99.43
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 99.39
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 99.32
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 99.12
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 99.02
4f3l_A 361 Mclock, circadian locomoter output cycles protein 99.0
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 98.85
4ath_A83 MITF, microphthalmia-associated transcription fact 98.74
2lfh_A68 DNA-binding protein inhibitor ID-3; structural gen 98.62
4aya_A97 DNA-binding protein inhibitor ID-2; cell cycle; 2. 98.2
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A Back     alignment and structure
Probab=99.66  E-value=1.3e-16  Score=135.28  Aligned_cols=72  Identities=22%  Similarity=0.328  Sum_probs=52.5

Q ss_pred             CccccccCCCCCCCccHHHHHHHHHHHHHHHHHhhccCCCCC---CCCHhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 038558          288 PCKIRAKRGCATHPRSIAERERRTRISRKLKKLQDLVPNMDK---QTSYSDMLDLAVQHIKGLQNQVENLHKDLE  359 (369)
Q Consensus       288 p~k~RakRg~at~~HsiaERrRReRINer~~~Lr~LVP~~~K---~tdKAsILdeAI~YIK~LQ~qVk~L~~~~e  359 (369)
                      .++..+++++++.+|+++||+||++||++|.+|++|||.+.+   +.+|++||++||+||++||++++.|++..+
T Consensus        17 ~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~   91 (118)
T 4ati_A           17 EARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN   91 (118)
T ss_dssp             --------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556778888888999999999999999999999999999853   368999999999999999999999987544
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Back     alignment and structure
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus} Back     alignment and structure
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 369
d1am9a_80 a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI 5e-13
d1uklc_61 a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId 1e-12
d1nkpa_88 a.38.1.1 (A:) Myc proto-oncogene protein {Human (H 1e-12
d1nkpb_83 a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T 9e-12
d1a0aa_63 a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa 1e-10
d1nlwa_79 a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T 2e-10
d1mdya_68 a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul 2e-10
d1an4a_65 a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien 5e-09
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (150), Expect = 5e-13
 Identities = 17/67 (25%), Positives = 35/67 (52%)

Query: 294 KRGCATHPRSIAERERRTRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVEN 353
            RG      +  E+  R+ I+ K+ +L+DLV   + + + S +L  A+ +I+ LQ+  + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 354 LHKDLEH 360
           L ++   
Sbjct: 62  LKQENLS 68
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63 Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68 Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query369
d1am9a_80 SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} 99.56
d1a0aa_63 Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce 99.49
d1nlwa_79 Mad protein {Human (Homo sapiens) [TaxId: 9606]} 99.48
d1uklc_61 SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} 99.45
d1nkpb_83 Max protein {Human (Homo sapiens) [TaxId: 9606]} 99.45
d1mdya_68 Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10 99.45
d1nkpa_88 Myc proto-oncogene protein {Human (Homo sapiens) [ 99.43
d1an4a_65 Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960 99.36
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.5e-15  Score=116.95  Aligned_cols=62  Identities=24%  Similarity=0.313  Sum_probs=57.4

Q ss_pred             CCccHHHHHHHHHHHHHHHHHhhccCCCCCCCCHhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038558          300 HPRSIAERERRTRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVENLHKDLEHC  361 (369)
Q Consensus       300 ~~HsiaERrRReRINer~~~Lr~LVP~~~K~tdKAsILdeAI~YIK~LQ~qVk~L~~~~e~~  361 (369)
                      ..|+.+||+||++||+.|..|++|||.+..+++|++||+.||+||+.|+++++.|.++.+..
T Consensus         8 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~l   69 (80)
T d1am9a_           8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSL   69 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45999999999999999999999999988768999999999999999999999999877654
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure